BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011908
(475 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/435 (69%), Positives = 353/435 (81%), Gaps = 25/435 (5%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVV-SRAEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ MYEK SI+G LITE
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITE 356
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
HAKGGKCIVFTQTKRDADRLA+AMA+++ CE LHGDISQSQRERTLS FRDG FN+L+AT
Sbjct: 357 HAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVAT 416
Query: 401 DVAARGLDVPNVDLV 415
DVAARGLD+PNVDL+
Sbjct: 417 DVAARGLDIPNVDLI 431
>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/435 (69%), Positives = 354/435 (81%), Gaps = 25/435 (5%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ + A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVVSR-AEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFXESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ MYEK SI+G LITE
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITE 356
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
HAKGGKCIVFTQTKRDADRLA+AMA+++ CE LHGDISQSQRERTLS FRDG FN+L+AT
Sbjct: 357 HAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVAT 416
Query: 401 DVAARGLDVPNVDLV 415
DVAARGLD+PNVDL+
Sbjct: 417 DVAARGLDIPNVDLI 431
>gi|225446899|ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 303/435 (69%), Positives = 354/435 (81%), Gaps = 25/435 (5%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ + A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVVSR-AEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ MYEK SI+G LITE
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITE 356
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
HAKGGKCIVFTQTKRDADRLA+AMA+++ CE LHGDISQSQRERTLS FRDG FN+L+AT
Sbjct: 357 HAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVAT 416
Query: 401 DVAARGLDVPNVDLV 415
DVAARGLD+PNVDL+
Sbjct: 417 DVAARGLDIPNVDLI 431
>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
Length = 612
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 295/420 (70%), Positives = 338/420 (80%), Gaps = 9/420 (2%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSG----PVIPRHDDIIKSRFSA 57
M + +L+RS SKR L+A+LTS+ +L HLA A + VI D +K F +
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINAVLFHHLAPAAARVSDLAVIGSSD--VKPGFLS 57
Query: 58 G--TREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALA 115
G REFH S PL+F++S+ + + S+ +GL IS+L IS +IV AL+
Sbjct: 58 GVKAREFHFESGPLEFRASMVSSAGFAISESSERRVGDSESDGLAISELGISPEIVKALS 117
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175
+GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHGRGRNPL
Sbjct: 118 SKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPL 177
Query: 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTPGRVIDL
Sbjct: 178 CLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDL 237
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295
+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP WIRSLT
Sbjct: 238 MKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTK 297
Query: 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355
KYL NPLT+DLVGDSDQKLADGI+ YSI Y + SIIG L+TEHAKGGKCIVFTQTKR
Sbjct: 298 KYLNNPLTIDLVGDSDQKLADGITTYSILADSYGRASIIGPLVTEHAKGGKCIVFTQTKR 357
Query: 356 DADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
DADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FNIL+ATDVAARGLDVPNVDL+
Sbjct: 358 DADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLI 417
>gi|22331253|ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
gi|75335516|sp|Q9LUW5.1|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
Length = 616
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/426 (69%), Positives = 338/426 (79%), Gaps = 18/426 (4%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDI-------IKSR 54
M + +L+RS SKR L+A+LTS+ T+L +LA P R D+ +K+
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLA-----PAATRVSDLALIGSSDVKAG 54
Query: 55 FSAGT--REFHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEGLDISKLDISQD 109
F G + H S PLDF++S+ Q + + V +S +GL IS+L IS +
Sbjct: 55 FPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPE 114
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
IV AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHG
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGRNPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTP
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTP 234
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP W
Sbjct: 235 GRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSW 294
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
IRSLT KYL NPLTVDLVGDSDQKLADGI+ YSI Y + SIIG L+TEHAKGGKCIV
Sbjct: 295 IRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIV 354
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FTQTKRDADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FNIL+ATDVAARGLDV
Sbjct: 355 FTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDV 414
Query: 410 PNVDLV 415
PNVDL+
Sbjct: 415 PNVDLI 420
>gi|449463625|ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 593
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 291/424 (68%), Positives = 336/424 (79%), Gaps = 10/424 (2%)
Query: 1 MMSSIILKRSSSFLTSKRALTAALTS-VETILHSHLAAAKSGPVIP--RHDDII----KS 53
MMS+I+L+RSS+ S + + L + + L S + +H I KS
Sbjct: 1 MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFQHFSTIGVTEKS 60
Query: 54 -RFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY-VAYDDSSKDEGLDISKLDISQDIV 111
F ++ FHA S PL+FK+S+ + A+ AV+DY A S DEGL+I KL I+ +IV
Sbjct: 61 LGFGFQSKGFHAASGPLNFKASLVSK-AEFAVEDYDCASSSKSGDEGLEIGKLGIAPEIV 119
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
+ALAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK+I+FN K+GRG
Sbjct: 120 SALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKLIQFNAKNGRG 179
Query: 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
RNPL LVLAPTRELA+QVEKEF E+APSLDTICVYGG PIS QMR LDYGVD VGTPGR
Sbjct: 180 RNPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGR 239
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
+IDL+ R +LNLSEVQFVVLDEADQML VGF EDVE ILERLPQ RQSMMFSATMP WI
Sbjct: 240 LIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWIL 299
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L+ YL NPLT+DLVGDSDQKLADGISL+S+ + Y K SIIG LITEH KGGKCI+FT
Sbjct: 300 KLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVSETYGKASIIGPLITEHGKGGKCIIFT 359
Query: 352 QTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411
QTKRDADRLA+AM ++ CE LHGDISQSQRERTLS FRDGRFN+L+ATDVAARGLD+PN
Sbjct: 360 QTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPN 419
Query: 412 VDLV 415
VDLV
Sbjct: 420 VDLV 423
>gi|449505807|ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 611
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 289/424 (68%), Positives = 333/424 (78%), Gaps = 10/424 (2%)
Query: 1 MMSSIILKRSSSFLTSKRALTAALTS-VETILHSHLAAAKSGPVIP--RHDDIIKSR--- 54
MMS+I+L+RSS+ S + + L + + L S + +H I
Sbjct: 1 MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFQHFSTIGVTEKP 60
Query: 55 --FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY-VAYDDSSKDEGLDISKLDISQDIV 111
F ++ FHA S PL+FK+S+ A+ AV+DY A S DEGL+I KL I+ +IV
Sbjct: 61 LGFGFQSKGFHAASGPLNFKASLV-SKAEFAVEDYDCASSSKSGDEGLEIGKLGIAPEIV 119
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
+ALAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK+I+FN K+GRG
Sbjct: 120 SALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKLIQFNAKNGRG 179
Query: 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
RNPL LVLAPTRELA+QVEKEF E+APSLDTICVYGG PIS QMR LDYGVD VGTPGR
Sbjct: 180 RNPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGR 239
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
+IDL+ R +LNLSEVQFVVLDEADQML VGF EDVE ILERLPQ RQSMMFSATMP WI
Sbjct: 240 LIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWIL 299
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L+ YL NPLT+DLVGDSDQKLADGISL+S+ + Y K SIIG LITEH KGGKCI+FT
Sbjct: 300 KLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVSETYGKASIIGPLITEHGKGGKCIIFT 359
Query: 352 QTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411
QTKRDADRLA+AM ++ CE LHGDISQSQRERTLS FRDGRFN+L+ATDVAARGLD+PN
Sbjct: 360 QTKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPN 419
Query: 412 VDLV 415
VDLV
Sbjct: 420 VDLV 423
>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
Length = 615
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 291/440 (66%), Positives = 334/440 (75%), Gaps = 30/440 (6%)
Query: 2 MSSIILKRSSSFL-TSKRALTAALTSVETILHSHLAAAK----------SGPVIPRHDDI 50
M S +L RS FL TS+R L A++TS+ L +LA A +G + +
Sbjct: 1 MISTVLHRS--FLGTSRRTLAASVTSINAALFHNLAPAAAATATVSDLANGATNVKSLPL 58
Query: 51 IKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEG------------ 98
+ F R+FH S P +F+SSI +A + +Y++S D G
Sbjct: 59 NSNPFGVKGRDFHVKSVPSEFRSSIVSPAGFAAQEYAPSYENS--DGGMGDSESVGSSSG 116
Query: 99 ---LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
L IS+L IS +IV AL RGI KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI
Sbjct: 117 GDGLAISELGISPEIVKALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 176
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
P++DKIIKFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QM
Sbjct: 177 PVIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQM 236
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L+YG+D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP+
Sbjct: 237 RELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPE 296
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQSMMFSATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA Y + SIIG
Sbjct: 297 KRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIG 356
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ EH KGGKCIVFTQTKRDADRLA +AKS+ CE LHGDISQ+QRERTL+ FRDG FN
Sbjct: 357 PLVNEHGKGGKCIVFTQTKRDADRLAFGLAKSFKCEALHGDISQAQRERTLAGFRDGNFN 416
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLDVPNVDLV
Sbjct: 417 ILVATDVAARGLDVPNVDLV 436
>gi|15228722|ref|NP_188870.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
gi|75335517|sp|Q9LUW6.1|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
Length = 610
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 287/433 (66%), Positives = 329/433 (75%), Gaps = 20/433 (4%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKS-------GPVIPRHDDIIKSR 54
M S +L+RS TS+R L A++TS+ L +LA A + G + S
Sbjct: 1 MISTVLRRSI-LGTSRRTLAASVTSINAALFHNLAPAAATVSDLANGATNVKSLPSNSSP 59
Query: 55 FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSS------------KDEGLDIS 102
F R+FH S P +F+SSI +A + +Y++ +GL I+
Sbjct: 60 FGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLAIA 119
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
L IS +IV AL RGI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKII
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
KFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR L+YG+
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGI 239
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP RQSMMF
Sbjct: 240 DVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMF 299
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA Y + SIIG L+ EH
Sbjct: 300 SATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHG 359
Query: 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
KGGKCIVFTQTKRDADRLA +AKSY CE LHGDISQ+QRERTL+ FRDG F+IL+ATDV
Sbjct: 360 KGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 403 AARGLDVPNVDLV 415
AARGLDVPNVDLV
Sbjct: 420 AARGLDVPNVDLV 432
>gi|356554094|ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 610
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 287/442 (64%), Positives = 341/442 (77%), Gaps = 25/442 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + IL+R+ S L S+R AAL S T +H + + +R
Sbjct: 1 MLTAILRRTCSTL-SRRGFPAALISASTA-GNHFRPPSAAFI---------------SRT 43
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK----DEGLDISKLDISQDIVAALARR 117
FH+ + PL+F+SS + A+ AVDD+ Y++ SK DEGL+I+KL IS+DIV+ALA++
Sbjct: 44 FHSNTGPLNFRSS-SCHRAEYAVDDF-PYEEGSKGNAADEGLEIAKLGISEDIVSALAKK 101
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177
GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DKII+FN KHGRGR+PL L
Sbjct: 102 GITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLAL 161
Query: 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK 237
VLAPTRELA+QVE EF ESAP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+
Sbjct: 162 VLAPTRELARQVETEFCESAPNLDTICVYGGTPISRQMRELDYGVDIAVGTPGRIIDLLN 221
Query: 238 RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297
R ALNL +VQFVVLDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ ++ Y
Sbjct: 222 RGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNY 281
Query: 298 LKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDA 357
L NPLT+DLVGDSDQKLADGISLYSIAT +Y K I+ LITEHAKGGKCIVFTQTKRDA
Sbjct: 282 LNNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDA 341
Query: 358 DRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL 417
DRL++ MA+S CE LHGDISQ+QRE+TL+ FR+G FN+L+ATDVA+RGLD+PNVDLV
Sbjct: 342 DRLSYTMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIH 401
Query: 418 VVLERKEVQFL--STQISRPGK 437
L F+ S + R GK
Sbjct: 402 YDLPNNSEIFVHRSGRTGRAGK 423
>gi|356499321|ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 595
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 288/441 (65%), Positives = 345/441 (78%), Gaps = 18/441 (4%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + +L+R+SS L S+R AAL S T + A H ++ + + +R
Sbjct: 1 MLTAVLRRTSSTL-SRRGFPAALISASTATATATAG--------NHFRLLSA--AVNSRT 49
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK---DEGLDISKLDISQDIVAALARRG 118
FH+ PL+F++S + A+ AVDD+ Y++ SK DEGL+I+KL ISQDIV+ALA++G
Sbjct: 50 FHSNPGPLNFRAS-SCHRAEYAVDDF-PYEEGSKGNADEGLEIAKLGISQDIVSALAKKG 107
Query: 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178
I+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK+I+FN KHGRGR+PL LV
Sbjct: 108 ITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQFNAKHGRGRDPLALV 167
Query: 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
LAPTRELA+QVE EF ESAP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+ R
Sbjct: 168 LAPTRELARQVESEFCESAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNR 227
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
ALNL +VQFVVLDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ ++ YL
Sbjct: 228 GALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNYL 287
Query: 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDAD 358
NPLT+DLVGDSDQKLADGISLYSIAT +Y K I+ LITEHAKGGKCIVFTQTKRDAD
Sbjct: 288 NNPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDAD 347
Query: 359 RLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELV 418
RL++AMA+S CE LHGDISQ+QRE+TL+ FR+G FN+L+ATDVA+RGLD+PNVDLV
Sbjct: 348 RLSYAMARSVKCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHY 407
Query: 419 VLERKEVQFL--STQISRPGK 437
L F+ S + R GK
Sbjct: 408 DLPNNSEIFVHRSGRTGRAGK 428
>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
Length = 556
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 270/383 (70%), Positives = 322/383 (84%), Gaps = 5/383 (1%)
Query: 59 TREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLDISKLDISQDIVAALAR 116
+R+FH S PLDFK+S Q A AV DY + ++ K +EGL+IS L IS++IV +LA+
Sbjct: 26 SRDFHVKSGPLDFKASSVTQ-AGIAVADYGSDEEKGKGSEEGLEISNLGISKEIVNSLAK 84
Query: 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176
+GI+KLFPIQKAVLEPAMQG+DM GRARTGTGKTLAFGIPILDKII+FN++HG+GRNPL
Sbjct: 85 KGITKLFPIQKAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKIIEFNKQHGKGRNPLA 144
Query: 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI 236
+V+APTRELA+QV+KEFH+SAPSLDTIC+YGG PIS QMR L+YGVD VVGTPGR+IDL+
Sbjct: 145 MVMAPTRELARQVQKEFHDSAPSLDTICLYGGVPISSQMRELEYGVDVVVGTPGRIIDLM 204
Query: 237 KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296
KR +LNLSE+++VVLDEADQML VGF +D+E IL RLP+ R SM FSATMP WI+ L K
Sbjct: 205 KRGSLNLSEIKYVVLDEADQMLGVGFVDDIETILSRLPKKRHSMCFSATMPSWIKQLVRK 264
Query: 297 YLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD 356
YLK+PLT+DLVGDSD+KLADGI+LYSIA+ MY K SI+G LITEHAKGGKCIVFT+TKRD
Sbjct: 265 YLKDPLTIDLVGDSDRKLADGITLYSIASDMYAKASILGPLITEHAKGGKCIVFTETKRD 324
Query: 357 ADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVE 416
ADRLA+AMAK++ CE LHGDISQ+ RERTLS FR+G FNIL+ATDVAARGLDVPNVDL+
Sbjct: 325 ADRLAYAMAKNHKCEALHGDISQNVRERTLSGFREGHFNILVATDVAARGLDVPNVDLII 384
Query: 417 LVVLERKEVQFL--STQISRPGK 437
L R F+ S + R GK
Sbjct: 385 HYALPRCSETFVHRSGRTGRAGK 407
>gi|357494025|ref|XP_003617301.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355518636|gb|AET00260.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 802
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 282/417 (67%), Positives = 330/417 (79%), Gaps = 24/417 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + IL+R+SS + S+R + AA IL S AA + RH R
Sbjct: 1 MITTILRRASSTI-SRRTIPAA----AEILFSTTAATEL-----RH---------LTARS 41
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK---DEGLDISKLDISQDIVAALARRG 118
FH+ S+PL F++S A + +A + +++ SK DEGL+I+KL ISQDIV+AL ++G
Sbjct: 42 FHSKSQPLLFRASSASRAGYAA--EAFPFEEPSKSNSDEGLEIAKLGISQDIVSALEKKG 99
Query: 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178
I+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DKII+FN KHGRG++PL LV
Sbjct: 100 ITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGKDPLALV 159
Query: 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
LAPTRELAKQVEKEF+E+AP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+ R
Sbjct: 160 LAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNR 219
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
ALNL EVQFV+LDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ LT YL
Sbjct: 220 GALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAERQTLMFSATMPTWIKQLTRNYL 279
Query: 299 KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDAD 358
KNPLT+DLVGDSDQKLADGISLYSI + Y K II LI EHAKGGKCIVFTQTKRDAD
Sbjct: 280 KNPLTIDLVGDSDQKLADGISLYSILSDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDAD 339
Query: 359 RLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
R++H M+KS CE LHGDISQ QRERTL+ FR+G FN+L+ATDVA+RGLD+PNVDLV
Sbjct: 340 RISHGMSKSIPCEALHGDISQIQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLV 396
>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/380 (70%), Positives = 312/380 (82%), Gaps = 3/380 (0%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R+FH S PLDFK+S + +AV DY + +EGL+IS+L ISQ+IV ALA++GI
Sbjct: 4 RDFHVKSGPLDFKAS-SVTETFNAVPDYGYDEGKGNEEGLEISRLGISQEIVGALAKKGI 62
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
+KLFPIQ+AVLEPAMQG+DM GRARTGTGKTLAFGIPILDKI++FN +HGRGR PL +V+
Sbjct: 63 TKLFPIQRAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKILQFNAQHGRGRYPLGIVM 122
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF E+APSLD C+YGGTPIS QMR L+YGVD VVGTPGR+IDL+KR
Sbjct: 123 APTRELARQVEKEFREAAPSLDITCLYGGTPISQQMRDLEYGVDVVVGTPGRIIDLMKRG 182
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
+L LSEVQ VVLDEADQML VGF +D+E IL +PQ R SM FSATMP WIR L KYLK
Sbjct: 183 SLVLSEVQHVVLDEADQMLGVGFVDDIETILSSVPQKRHSMCFSATMPSWIRELVRKYLK 242
Query: 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
+PLT+DLVGDSD+KLA+GI+LYSIA+ +Y K SI+G LITEHAKGGKCIVFT+TKRDADR
Sbjct: 243 DPLTIDLVGDSDKKLAEGITLYSIASDLYAKASILGPLITEHAKGGKCIVFTETKRDADR 302
Query: 360 LAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVV 419
LA+AMAK+Y CE LHGDISQS RERTLS FR+G FNIL+ATDVAARGLDVPNVDL+
Sbjct: 303 LAYAMAKTYKCEALHGDISQSVRERTLSGFREGHFNILVATDVAARGLDVPNVDLIIHYA 362
Query: 420 LERKEVQFL--STQISRPGK 437
L R F+ S + R GK
Sbjct: 363 LPRCSETFVHRSGRTGRAGK 382
>gi|143456572|sp|Q0D8N0.2|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
Length = 602
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 271/429 (63%), Positives = 325/429 (75%), Gaps = 28/429 (6%)
Query: 29 TILHSHLAAAKSGPVIPRHDDIIKSRFSAGT-----------------REFHAISRPLDF 71
++L L AA S P PR ++ + S R FH PL F
Sbjct: 3 SLLSRALCAASSSPAAPRGRSLLAALLSPSASPLDPCRGPAAPEPPRRRAFHGSPSPLGF 62
Query: 72 KSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+S+ A W ++ V DD GL++++L IS IV LA RGI++LFPIQ+AVL
Sbjct: 63 RSTPASWSSPEAGA--AVGGDD-----GLEVARLGISPWIVERLAARGITRLFPIQRAVL 115
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
+PAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++LAPTRELA+QVE
Sbjct: 116 DPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVE 175
Query: 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
KEF ESAP LD++CVYGG PISHQMRAL+YGVD VVGTPGR+IDL++R LNLSE+QFVV
Sbjct: 176 KEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVV 234
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
LDEADQML+VGF EDVEVI+E LPQNRQSM+FSATMP WIR +T+KYLK+P+ +DLVGD
Sbjct: 235 LDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDE 294
Query: 311 DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNC 370
DQKL +GISLYSIA+ Y KPSI+G LI EHA GGKCIVFTQTKR+ADRLA+AM +SY C
Sbjct: 295 DQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYAC 354
Query: 371 EPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL-- 428
+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDLV L F+
Sbjct: 355 QALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHR 414
Query: 429 STQISRPGK 437
S + +R GK
Sbjct: 415 SGRTARAGK 423
>gi|356569971|ref|XP_003553167.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 643
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 256/362 (70%), Positives = 302/362 (83%), Gaps = 4/362 (1%)
Query: 58 GTREFHAISRPLDFKSSIAWQHAQSAVD-DYVAYDDSSK---DEGLDISKLDISQDIVAA 113
G R FHA PL+F++S+ + AQ A++ DY Y++ S DEGL+I+KL I+ +IV A
Sbjct: 42 GARTFHANPGPLNFRASLVPRAAQFAIERDYSNYEEVSNANSDEGLEIAKLGIAPEIVDA 101
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
LAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILD+I +FN KHG+GRN
Sbjct: 102 LARKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRITQFNAKHGQGRN 161
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
PL LVLAPTRELA+QVEKEF+E+AP+L TIC+YGG PI QMR L+YGVD VGTPGR+I
Sbjct: 162 PLALVLAPTRELARQVEKEFNEAAPNLATICLYGGMPIQQQMRQLNYGVDIAVGTPGRII 221
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
DL+ R ALNL +V+FVVLDEADQML VGF E VE ILE L NRQ++MFSATMP WI+++
Sbjct: 222 DLLNRGALNLKDVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNI 281
Query: 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT 353
T YL NPLT+DLVGDSDQKLADGISLYSI + Y K I+ LITEHA GGKCIVFTQT
Sbjct: 282 TRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQT 341
Query: 354 KRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413
KRDADRL++ MAKS CE LHGDISQ+QRERTL+ FR+ FN+L+ATDVA+RGLD+PNVD
Sbjct: 342 KRDADRLSYVMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVD 401
Query: 414 LV 415
LV
Sbjct: 402 LV 403
>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
Length = 602
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/408 (65%), Positives = 313/408 (76%), Gaps = 19/408 (4%)
Query: 10 SSSFLTSKRALTAALTSVETILHSHLAAAKSG-PVIPRHDDIIKSRFSAGTREFHAISRP 68
SS T +R L AAL S + A G P PR R H P
Sbjct: 11 SSPAATCRRPLLAALLSPPSAPPGPCQAPTPGSPAPPR-------------RALHGSPNP 57
Query: 69 LDFKSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQK 127
L F+S+ A W V D+ +EGL+I++L IS IV LA RGI+KLFPIQ+
Sbjct: 58 LGFRSTPASWTRPGPGEGVGV---DTGAEEGLEIARLWISPRIVEKLAARGITKLFPIQR 114
Query: 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187
AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+DKI+ NEK+G GRNPL +VLAPTRELA+
Sbjct: 115 AVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSHNEKNGNGRNPLAIVLAPTRELAR 174
Query: 188 QVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
QVEKEF ESAP LDT+CVYGG PI+ QMR L+YGVD VVGTPGR+IDL++R LNLS++Q
Sbjct: 175 QVEKEFRESAP-LDTLCVYGGVPINQQMRVLNYGVDIVVGTPGRIIDLLRRGVLNLSQIQ 233
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
FVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR ++NKYL +P+ +DLV
Sbjct: 234 FVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISNKYLNDPVIIDLV 293
Query: 308 GDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS 367
GDSDQKL +GISLYSIA+ + K SI+G LI EHA GGKCIVFTQTKRDADRLA+ M +S
Sbjct: 294 GDSDQKLPEGISLYSIASDNFGKQSILGPLIKEHANGGKCIVFTQTKRDADRLAYVMGRS 353
Query: 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
Y C+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDLV
Sbjct: 354 YPCQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLV 401
>gi|357111676|ref|XP_003557638.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like
[Brachypodium distachyon]
Length = 604
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/356 (69%), Positives = 301/356 (84%), Gaps = 7/356 (1%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R FHA RPL F+++ + + + ++GL+++KL IS IV LA RGI
Sbjct: 51 RAFHASPRPLGFRATTPASCPGTVTEA------GAGEDGLEVAKLGISPRIVERLAARGI 104
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++L
Sbjct: 105 TRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGTGRNPLAIIL 164
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF ESAP LDT+CVYGG PI+ QMR L+YGVD VVGTPGR+IDL++R
Sbjct: 165 APTRELARQVEKEFKESAP-LDTLCVYGGVPINQQMRTLNYGVDVVVGTPGRIIDLLRRG 223
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
LNLSE+QFVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR L+N+YLK
Sbjct: 224 NLNLSEIQFVVLDEADQMLAVGFDEDVEVIMEKLPQNRQSMLFSATMPSWIRKLSNQYLK 283
Query: 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
+P+ +DLVG+SDQKL +GISLYSIA+ Y K SI+G LI EHA GGKCIVFTQTKR+ADR
Sbjct: 284 DPVIIDLVGESDQKLPEGISLYSIASENYGKSSILGTLIKEHANGGKCIVFTQTKREADR 343
Query: 360 LAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
LA++M +SY C+ LHGDI+Q+QRERTLS FR+GRFNIL+ATDVAARGLD+PNVDLV
Sbjct: 344 LAYSMGRSYACQALHGDITQNQRERTLSGFREGRFNILVATDVAARGLDIPNVDLV 399
>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 251/356 (70%), Positives = 299/356 (83%), Gaps = 5/356 (1%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R FHA PL F+S+ + + A + ++GL++++L IS IV LA RGI
Sbjct: 52 RAFHASPGPLGFRSTTPAPWPGTVSEAGAA----AGEDGLEVARLGISPRIVERLAARGI 107
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++L
Sbjct: 108 TRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIIL 167
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF ESAP LDT+CVYGG PIS QMR L+YGVD VVGTPGRVIDL++R
Sbjct: 168 APTRELARQVEKEFRESAP-LDTLCVYGGVPISQQMRTLNYGVDVVVGTPGRVIDLLRRG 226
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
LNLSE+QF+VLDEADQML+VGF E VEVI+E+LPQNRQSM+FSATMP WIR LTN+YLK
Sbjct: 227 VLNLSEIQFMVLDEADQMLAVGFDEAVEVIMEKLPQNRQSMLFSATMPSWIRKLTNQYLK 286
Query: 300 NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
+P+ +DLVGDS+QKL +GISLYSI + Y K SI+G LI EHA GGKCIVFTQTKR+ADR
Sbjct: 287 DPVIIDLVGDSEQKLPEGISLYSIVSENYGKSSILGPLIKEHADGGKCIVFTQTKREADR 346
Query: 360 LAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
LA+AM +SY C+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDLV
Sbjct: 347 LAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLV 402
>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
Length = 613
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/360 (70%), Positives = 301/360 (83%), Gaps = 5/360 (1%)
Query: 60 REFHAISRPLDFKSSIA-WQH---AQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALA 115
R FH + L F+S+ A W + + D+ ++GL+I++L S IV LA
Sbjct: 52 RAFHCSTPTLGFRSTPASWAGPCPGEGEGEGEGEGVDTGAEKGLEIARLGTSPRIVEKLA 111
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175
RGI++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+DKI+ +NEK+G GRNPL
Sbjct: 112 ARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSYNEKNGNGRNPL 171
Query: 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
++LAPTRELA+QVEKEF ESAP LDT+CVYGG PI+ QMRAL+YGVD VVGTPGRVIDL
Sbjct: 172 AIILAPTRELARQVEKEFRESAP-LDTLCVYGGVPINQQMRALNYGVDIVVGTPGRVIDL 230
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295
++R LNLS++QFVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR ++N
Sbjct: 231 LRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISN 290
Query: 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355
KYLK+P+ +DLVGDSDQKL +GISLYSIA+ + KPSIIG LI EHA GKCIVFTQTKR
Sbjct: 291 KYLKDPVIIDLVGDSDQKLPEGISLYSIASDNFGKPSIIGPLIKEHANVGKCIVFTQTKR 350
Query: 356 DADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+ADRLA+ M +SY C+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDLV
Sbjct: 351 EADRLAYVMGRSYQCQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLV 410
>gi|356524181|ref|XP_003530710.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 605
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 250/362 (69%), Positives = 297/362 (82%), Gaps = 4/362 (1%)
Query: 58 GTREFHAISRPLDFKSSIAWQHAQSAVD-DYVAYDD---SSKDEGLDISKLDISQDIVAA 113
G+R H PL+F++S + AQ AV+ DY Y++ ++ DEGL+I+ L I+ IV A
Sbjct: 43 GSRTIHTNPGPLNFRASAVPRAAQFAVERDYSNYEEVSGANSDEGLEIANLGIAPQIVDA 102
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
LA++GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILD II+FN KHG+GR+
Sbjct: 103 LAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDSIIQFNAKHGQGRH 162
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
PL LVLAPTRELA+QVEKEF+E+AP+L IC+YGG PI QMR L+YGVD VGTPGR+I
Sbjct: 163 PLALVLAPTRELARQVEKEFNEAAPNLAMICLYGGMPIQQQMRQLNYGVDIAVGTPGRII 222
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
DL+ R ALNL V+FVVLDEADQML VGF E VE ILE L NRQ++MFSATMP WI+++
Sbjct: 223 DLLNRGALNLKNVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNI 282
Query: 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT 353
T YL NPLT+DLVGDSDQKLADGISLYSI + Y K I+ LITEHA GGKCIVFTQT
Sbjct: 283 TRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQT 342
Query: 354 KRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413
KRDADRL++ MAKS CE LHGDISQ+QRE+TL+ FR+ FN+L+ATDVA+RGLD+PNVD
Sbjct: 343 KRDADRLSYVMAKSLRCEALHGDISQTQREKTLAGFRNNNFNVLVATDVASRGLDIPNVD 402
Query: 414 LV 415
LV
Sbjct: 403 LV 404
>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
Length = 618
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/327 (72%), Positives = 287/327 (87%), Gaps = 1/327 (0%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A ++ +EGL+I+KL IS IV LA++GI+KLFPIQ+AVLEPAMQGRDM+GRA+TGTG
Sbjct: 88 ATGGAAAEEGLEIAKLGISNKIVERLAKKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTG 147
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
KTLAFGIPILD II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+P L+T+CVYGG
Sbjct: 148 KTLAFGIPILDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREFLDSSP-LETLCVYGG 206
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
TPI Q+R L+YGVD V+GTPGRVIDL+KR AL+L+E++FVVLDEADQMLSVGF +DVE
Sbjct: 207 TPIMQQIRQLNYGVDVVIGTPGRVIDLLKRGALSLAEIRFVVLDEADQMLSVGFDQDVET 266
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILER+P RQ++MFSATMP WIR LT KYL +P+TVDLVG+ DQKLA+GISL S+++
Sbjct: 267 ILERVPPQRQTLMFSATMPTWIRKLTQKYLNSPVTVDLVGEDDQKLAEGISLLSVSSENR 326
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSA 388
+KP+++G+LI EHAKGGKCIVFTQTKRDADRL+H+M++S+ CE LHGDISQSQRERTL
Sbjct: 327 QKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHSMSRSFQCEALHGDISQSQRERTLGG 386
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLV 415
FRDGRFNILIATDVAARGLD+PNVDLV
Sbjct: 387 FRDGRFNILIATDVAARGLDIPNVDLV 413
>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
Length = 630
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/369 (66%), Positives = 299/369 (81%), Gaps = 16/369 (4%)
Query: 62 FHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEG------------LDISKLDI 106
FH+ L F+ + A A Q A D+ + Y++ + L+++KL I
Sbjct: 46 FHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGGAEEGLEVAKLGI 105
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPILD II+ NE
Sbjct: 106 SPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
K+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+
Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVI 224
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ++MFSATM
Sbjct: 225 GTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATM 284
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P WIR LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+ + KP+++G+LI EHAKGGK
Sbjct: 285 PTWIRRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGK 344
Query: 347 CIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
CIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL FR+G FNILIATDVAARG
Sbjct: 345 CIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARG 404
Query: 407 LDVPNVDLV 415
LD+PNVDLV
Sbjct: 405 LDIPNVDLV 413
>gi|414868924|tpg|DAA47481.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 1 [Zea mays]
gi|414868925|tpg|DAA47482.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 2 [Zea mays]
Length = 611
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/319 (73%), Positives = 281/319 (88%), Gaps = 1/319 (0%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EGL+I+KL IS IV LA +GI+KLFPIQ+AVLEPAMQGRDM+GRA+TGTGKTLAFGIP
Sbjct: 92 EGLEIAKLGISSKIVERLASKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIP 151
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
I+D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+P L+T+CVYGGTPI Q+R
Sbjct: 152 IMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREFLDSSP-LETLCVYGGTPIMQQIR 210
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+YGVD V+GTPGRVIDL+KR +L+L+E++FVVLDEADQMLSVGF DVE ILER+P
Sbjct: 211 KLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVVLDEADQMLSVGFDLDVETILERVPPQ 270
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ++MFSATMP WIR LT KYL NP+TVDLVG+ DQKLA+GISL ++++ EKP+++G+
Sbjct: 271 RQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGEDDQKLAEGISLLAVSSENREKPAVLGE 330
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
LI EHAKGGKCIVFTQTKRDADRL+H M++S+ CE LHGDISQSQRERTL+ FRDGRFNI
Sbjct: 331 LIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEALHGDISQSQRERTLAGFRDGRFNI 390
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARGLD+PNVDLV
Sbjct: 391 LIATDVAARGLDIPNVDLV 409
>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 614
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/372 (66%), Positives = 297/372 (79%), Gaps = 19/372 (5%)
Query: 62 FHAISRPLDFKSSIAWQ---HAQSAVDDYVAYDDS---------------SKDEGLDISK 103
FH+ PL ++ + A + HAQ A D+ Y+D+ +K+EGL+++K
Sbjct: 50 FHSRPGPLGYRETGAARAGAHAQFAADEGWNYEDARKPAGAVSGAGAAAGAKEEGLEVAK 109
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L IS +IV LA +GI+KLFPIQKAVLEPAMQG+DM+GRA+TGTGKTLAFGIPI+D II+
Sbjct: 110 LGISSEIVKRLAAKGITKLFPIQKAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIMDAIIR 169
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
NE + GR PL + LAPTRELAKQV+KEF +S+P L T+CVYGGTPI QMRALDYGVD
Sbjct: 170 HNEINKPGRLPLAICLAPTRELAKQVDKEFVDSSP-LQTLCVYGGTPIQQQMRALDYGVD 228
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRVIDL+KR ALNLS VQFVVLDEADQMLSVGF EDVE+IL ++P RQ++MFS
Sbjct: 229 VVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEDVEIILNKVPPKRQTLMFS 288
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMPPWIR L KYLK+P+ VDLVG+ DQKLA+GISL SIAT + KP+++ QLI +HAK
Sbjct: 289 ATMPPWIRKLMQKYLKDPVIVDLVGEDDQKLAEGISLLSIATENHAKPAVLAQLIQDHAK 348
Query: 344 GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403
GGKCIVFTQTKRDADRL++ M ++ C+ LHGDI+Q QRERTL FR+GRF+ LIATDVA
Sbjct: 349 GGKCIVFTQTKRDADRLSYTMGRTVQCQALHGDITQGQRERTLQGFREGRFSTLIATDVA 408
Query: 404 ARGLDVPNVDLV 415
ARGLD+PNVDLV
Sbjct: 409 ARGLDIPNVDLV 420
>gi|122227760|sp|Q0ILZ4.1|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
Length = 628
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/369 (65%), Positives = 299/369 (81%), Gaps = 16/369 (4%)
Query: 62 FHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEG------------LDISKLDI 106
FH+ L F+ + A A Q A D+ + Y++ + L+++KL I
Sbjct: 46 FHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGGAEEGLEVAKLGI 105
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPILD II+ NE
Sbjct: 106 SPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
K+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+
Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVI 224
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ++MFSATM
Sbjct: 225 GTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATM 284
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+ + KP+++G+LI EHAKGGK
Sbjct: 285 PTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGK 344
Query: 347 CIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
CIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL FR+G FNILIATDVAARG
Sbjct: 345 CIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARG 404
Query: 407 LDVPNVDLV 415
LD+PNVDLV
Sbjct: 405 LDIPNVDLV 413
>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
Length = 676
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/369 (65%), Positives = 299/369 (81%), Gaps = 16/369 (4%)
Query: 62 FHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEG------------LDISKLDI 106
FH+ L F+ + A A Q A D+ + Y++ + L+++KL I
Sbjct: 94 FHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGGAEEGLEVAKLGI 153
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPILD II+ NE
Sbjct: 154 SPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 213
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
K+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+
Sbjct: 214 KNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVI 272
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ++MFSATM
Sbjct: 273 GTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATM 332
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+ + KP+++G+LI EHAKGGK
Sbjct: 333 PTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGK 392
Query: 347 CIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
CIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL FR+G FNILIATDVAARG
Sbjct: 393 CIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARG 452
Query: 407 LDVPNVDLV 415
LD+PNVDLV
Sbjct: 453 LDIPNVDLV 461
>gi|357156628|ref|XP_003577522.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Brachypodium
distachyon]
Length = 613
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/321 (74%), Positives = 274/321 (85%), Gaps = 1/321 (0%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
K+EGL+++KL IS +IV LA RGI++LFPIQ+AVLEPAMQG+DMIGRA+TGTGKTLAFG
Sbjct: 95 KEEGLEVAKLGISDEIVTRLAARGITRLFPIQRAVLEPAMQGQDMIGRAKTGTGKTLAFG 154
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
IPILD IIK N+KH GR PL + LAPTRELAKQV+KEF +S+P L T+CVYGGTPI HQ
Sbjct: 155 IPILDAIIKHNKKHQPGRFPLAICLAPTRELAKQVDKEFVDSSP-LKTLCVYGGTPIQHQ 213
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L YGVD VVGTPGRVIDL+KR ALNLS VQFVVLDEADQMLSVGF E VE IL+ +P
Sbjct: 214 IRELQYGVDIVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEAVEEILQSVP 273
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
RQ++MFSATMP WIR LT KYLKNP TVDLVG+ DQKLA+GISL SIAT + KP+++
Sbjct: 274 VKRQTLMFSATMPTWIRKLTQKYLKNPATVDLVGEDDQKLAEGISLLSIATENHAKPAVL 333
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
QLI +H KGGKCIVFTQTKRDADRLA M +S C+PLHGDISQ QRERTL+ FRDGRF
Sbjct: 334 AQLIQDHGKGGKCIVFTQTKRDADRLAFTMGRSIQCQPLHGDISQVQRERTLAGFRDGRF 393
Query: 395 NILIATDVAARGLDVPNVDLV 415
+ LIATDVAARGLD+PNVDLV
Sbjct: 394 STLIATDVAARGLDIPNVDLV 414
>gi|308080376|ref|NP_001183357.1| uncharacterized protein LOC100501766 [Zea mays]
gi|223949963|gb|ACN29065.1| unknown [Zea mays]
gi|238010976|gb|ACR36523.1| unknown [Zea mays]
Length = 483
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/282 (74%), Positives = 250/282 (88%), Gaps = 1/282 (0%)
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
MQGRDM+GRA+TGTGKTLAFGIPI+D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF
Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREF 60
Query: 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+S+P L+T+CVYGGTPI Q+R L+YGVD V+GTPGRVIDL+KR +L+L+E++FVVLDE
Sbjct: 61 LDSSP-LETLCVYGGTPIMQQIRKLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVVLDE 119
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
ADQMLSVGF DVE ILER+P RQ++MFSATMP WIR LT KYL NP+TVDLVG+ DQK
Sbjct: 120 ADQMLSVGFDLDVETILERVPPQRQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGEDDQK 179
Query: 314 LADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
LA+GISL ++++ EKP+++G+LI EHAKGGKCIVFTQTKRDADRL+H M++S+ CE L
Sbjct: 180 LAEGISLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEAL 239
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
HGDISQSQRERTL+ FRDGRFNILIATDVAARGLD+PNVDLV
Sbjct: 240 HGDISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLV 281
>gi|414877991|tpg|DAA55122.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 472
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 205/282 (72%), Positives = 250/282 (88%), Gaps = 1/282 (0%)
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
MQGRDM+GRA+TGTGKTLAFGIPI+D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF
Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREF 60
Query: 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+S+P L+T+CVYGGTPI Q++ L+YGVD V+GTPGRVIDL+KR AL+L+E++FVVLDE
Sbjct: 61 LDSSP-LETLCVYGGTPIMQQIKQLNYGVDVVIGTPGRVIDLLKRGALSLAEIRFVVLDE 119
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
ADQMLSVGF +DVE ILER+P Q++MFSATMP WIR LT K+L +P+TVDLVG+ DQK
Sbjct: 120 ADQMLSVGFDKDVETILERVPPQHQTLMFSATMPTWIRKLTQKFLNSPVTVDLVGEDDQK 179
Query: 314 LADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
LA+GISL S+++ EKP+++G+LI EHAKGGKCIVFTQTKRDADRL+H M++S+ CE L
Sbjct: 180 LAEGISLLSVSSENREKPAVLGKLIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEAL 239
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
HGDISQS+RERTL+ FRDGRFNILIATDVA+RGLD+PNVDLV
Sbjct: 240 HGDISQSERERTLAGFRDGRFNILIATDVASRGLDIPNVDLV 281
>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 793
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/334 (65%), Positives = 266/334 (79%), Gaps = 6/334 (1%)
Query: 88 VAYDDSSKDEG--LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
+ D+ S D+G L IS+L I + ALA+RGI++LFPIQ+AVLEPAMQGRD+IGRA+T
Sbjct: 124 IRVDNESMDDGDELAISRLGIPDAVADALAKRGITQLFPIQRAVLEPAMQGRDLIGRAKT 183
Query: 146 GTGKTLAFGIPILDKIIKFNEKHG----RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201
GTGKTLAFGIPI++ II+ NE++ GR P LVLAPTRELAKQVE+EF ESAP L
Sbjct: 184 GTGKTLAFGIPIINNIIRENEENRVARRSGRAPRALVLAPTRELAKQVEREFMESAPMLS 243
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
TICVYGG IS Q R L GVD VGTPGR+IDLI R +L L EV+F+VLDEADQML+VG
Sbjct: 244 TICVYGGVAISSQQRLLTRGVDIAVGTPGRIIDLINRGSLRLQEVRFLVLDEADQMLAVG 303
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F EDVE ILE++P RQSM+FSATMP W++ L+ KYL + LT+DLVG+SD+KLAD I LY
Sbjct: 304 FEEDVEQILEQMPNQRQSMLFSATMPTWVKKLSRKYLHDALTIDLVGESDEKLADRIKLY 363
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQ 381
++AT K SI+ LI + KGGK IVFTQTKRDAD +A AMA++ CE LHGDISQSQ
Sbjct: 364 AVATVPQAKRSILNDLIAVYGKGGKTIVFTQTKRDADDVATAMARTLGCEALHGDISQSQ 423
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
RE+TL+AFR+G F++L+ATDVAARGLD+PNVDLV
Sbjct: 424 REKTLNAFREGNFSVLVATDVAARGLDIPNVDLV 457
>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 619
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/323 (66%), Positives = 257/323 (79%), Gaps = 3/323 (0%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
KDE L I+ L +S+DIV ALA+RGI+ LFPIQ+AVLEPAM+G+D+I RA+TGTGKTLAFG
Sbjct: 1 KDE-LAINSLGVSEDIVEALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFG 59
Query: 155 IPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
IPI+ I+ N ++ +GR+P LVLAPTRELAKQVE+EF ESAP L T+CVYGG PIS
Sbjct: 60 IPIIRHIVDGNAENAPRQGRSPRALVLAPTRELAKQVEREFMESAPMLSTVCVYGGVPIS 119
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q R L+ GVD VGTPGR+IDLI R +L L +V F+VLDEADQML+VGF EDVE IL++
Sbjct: 120 MQQRQLERGVDIAVGTPGRIIDLIDRGSLKLKDVHFLVLDEADQMLAVGFEEDVERILQQ 179
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP+ RQSM+FSATMP W++ L+ KYL PLT+DLVGDSD+KLADGI +I K S
Sbjct: 180 LPKQRQSMLFSATMPKWVKELSRKYLNKPLTIDLVGDSDEKLADGIKNLAIQLPASAKRS 239
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I+ LIT H KGGK IVFTQTKRDAD +A AM +C LHGDISQ QRE+TLSAFRDG
Sbjct: 240 ILSDLITVHGKGGKTIVFTQTKRDADDVAMAMGNLVSCGALHGDISQVQREKTLSAFRDG 299
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ +L+ATDVAARGLDVPNVDLV
Sbjct: 300 KIAVLVATDVAARGLDVPNVDLV 322
>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
Length = 802
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/344 (61%), Positives = 265/344 (77%), Gaps = 13/344 (3%)
Query: 85 DDYVAYDD-------SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
DDY D+ + D LD+S L++SQ++V ALA RGI+ LFPIQ+AVL PA++GR
Sbjct: 123 DDYDYEDEIGNDVVVDNNDGNLDLSGLNLSQELVEALANRGITHLFPIQRAVLVPALEGR 182
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN----PLCLVLAPTRELAKQVEKEF 193
D+IGRA+TGTGKTLAFGIPI++++ K N+++ R P LVLAPTRELAKQVEKEF
Sbjct: 183 DLIGRAKTGTGKTLAFGIPIIERLTKDNKENKLLRQSRRLPRVLVLAPTRELAKQVEKEF 242
Query: 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
ESAP L T C+YGG Q AL GVD VVGTPGR+IDL+ +L L+EVQF+VLDE
Sbjct: 243 KESAPFLSTACIYGGVSYVSQQNALARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDE 302
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
ADQML+VGF EDVE+IL+ LP RQSM+FSATMP W++ L+ K+L NP+T+DLVG++++K
Sbjct: 303 ADQMLAVGFEEDVEIILDNLPAERQSMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEK 362
Query: 314 LADGISLYSIA--TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCE 371
LA+GI LY++A TS K SI+G LIT AKGGK IVFTQTKRDAD ++ ++ + CE
Sbjct: 363 LAEGIKLYAVATTTSSNSKRSILGDLITVFAKGGKTIVFTQTKRDADEISLGLSSTIACE 422
Query: 372 PLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
LHGDISQ QRERTL+ FR+G+F+ L+ATDVAARGLD+ NVDLV
Sbjct: 423 ALHGDISQHQRERTLAGFREGKFSALVATDVAARGLDITNVDLV 466
>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 638
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/325 (64%), Positives = 253/325 (77%), Gaps = 3/325 (0%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+ KDE L I L +S+DIV ALA+RGI+ LFPIQ+AVLEPAM+G+D+I RA+TGTGKTLA
Sbjct: 21 AGKDE-LAIDSLGVSEDIVNALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLA 79
Query: 153 FGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
FGIPI+ II +++ GR+P LVLAPTRELAKQVE+EF ESAP L T+CVYGG
Sbjct: 80 FGIPIIQHIIDAHKESAPRHGRSPRALVLAPTRELAKQVEREFMESAPMLSTVCVYGGVS 139
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
IS Q R L+ GVD VGTPGR+IDLI R +L L V F+VLDEADQML+VGF EDVE IL
Sbjct: 140 ISMQQRQLERGVDIAVGTPGRIIDLIDRGSLKLQNVNFLVLDEADQMLAVGFEEDVERIL 199
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
++LP+NRQSM+FSATMP W++ L+ KYL PL ++LVGD+D KLA+GI+ +I K
Sbjct: 200 QQLPKNRQSMLFSATMPKWVKELSGKYLNRPLMINLVGDADDKLAEGITNLAIQLPATAK 259
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
SI+ LIT HAKGGK IVFTQTKRDAD +A AM C LHGDISQ QRE+TL+AFR
Sbjct: 260 RSILSDLITVHAKGGKTIVFTQTKRDADDVAMAMGNLVACGALHGDISQLQREKTLNAFR 319
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
+G +L+ATDVAARGLDVPNVDLV
Sbjct: 320 EGNITVLVATDVAARGLDVPNVDLV 344
>gi|343172316|gb|AEL98862.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/326 (62%), Positives = 262/326 (80%), Gaps = 5/326 (1%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S DE L+++KL + Q ++ +L +RGIS+LFPIQ+AVL PA++GRD+I RA+TGTGKTLAF
Sbjct: 121 SADE-LEVAKLGLPQKLIDSLIKRGISQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAF 179
Query: 154 GIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
GIPIL ++ + +++ GR P LVLAPTRELAKQVEKE E+AP L+T+CVYGG
Sbjct: 180 GIPILKRVTEGHDERSNLRRLGRLPKVLVLAPTRELAKQVEKEMKETAPYLNTVCVYGGV 239
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
+ Q AL GVD VVGTPGR+IDL+ N+L L EV+F+VLDEADQML+VGF EDVEVI
Sbjct: 240 SYTSQQSALSRGVDVVVGTPGRIIDLVNGNSLKLGEVEFLVLDEADQMLAVGFEEDVEVI 299
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
LE+LP+ RQSM+FSATMP WI+ L+ KYL NPLT+DLVGD ++KLA+GI LY+I+++
Sbjct: 300 LEKLPKERQSMLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAEGIKLYAISSTAAS 359
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K +++ +IT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+ F
Sbjct: 360 KRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIPSEALHGDISQHQRERTLNGF 419
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
R G+F++L+ATDVA+RGLD+PNVDLV
Sbjct: 420 RQGKFSVLVATDVASRGLDIPNVDLV 445
>gi|356572874|ref|XP_003554590.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/391 (56%), Positives = 277/391 (70%), Gaps = 12/391 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S + LDISKLD+ +V +L RGI++LFPIQ+AVL PA++GRD+I RA+TGTGKTL
Sbjct: 103 ESVNPDELDISKLDLPSRLVESLRSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTL 162
Query: 152 AFGIPILDKIIK--FNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
AFGIPI+ + + H R GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 163 AFGIPIIKGLTEDEHAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 222
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q AL GVD VVGTPGR+IDLI N+L LSEVQ++VLDEADQML+VGF EDVE+
Sbjct: 223 VSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEM 282
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE LP RQSM+FSATMP W++ L KYL NPLT+DLVGD ++KLA+GI LY+IA +
Sbjct: 283 ILENLPSQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATAT 342
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSA 388
K +I+ L+T +AKGGK IVFTQTKRDAD ++ ++ S E LHGDISQ QRERTL+
Sbjct: 343 SKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQRERTLNG 402
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKSRVLSEMLDAD 448
FR G+F +L+ATDVAARGLD+PNVDL+ L F + R G++ + +A
Sbjct: 403 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF----VHRSGRTGRAGKQGNAI 458
Query: 449 LL--SSQGSPLKEVET---CTMTWVAGLGME 474
LL SSQ ++ +E C +V+ ME
Sbjct: 459 LLYTSSQRRTVRSLERDVGCKFEFVSSPAME 489
>gi|356505715|ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/400 (56%), Positives = 280/400 (70%), Gaps = 13/400 (3%)
Query: 83 AVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
A D A + DE LDISKLD+ +V +L RGI++LFPIQ+AVL PA++GRD+I R
Sbjct: 96 ASDSDSAAESVHPDE-LDISKLDLPSRLVESLQSRGITQLFPIQRAVLVPALEGRDIIAR 154
Query: 143 ARTGTGKTLAFGIPILDKIIK--FNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPS 199
A+TGTGKTLAFGIPI+ + + H R GR P LVLAPTRELAKQVEKE ESAP
Sbjct: 155 AKTGTGKTLAFGIPIIKGLTEDEHAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPY 214
Query: 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
L T+CVYGG Q AL GVD VVGTPGR+IDLI N+L LSEVQ++VLDEADQML+
Sbjct: 215 LSTVCVYGGVSYVTQQGALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLA 274
Query: 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
VGF EDVE+ILE LP RQSM+FSATMP W++ L KYL NPLT+DLVGD ++KLA+GI
Sbjct: 275 VGFEEDVEMILENLPAQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIK 334
Query: 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQ 379
LY+IA + K +I+ L+T +AKGGK IVFTQTKRDAD ++ ++ S E LHGDISQ
Sbjct: 335 LYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQ 394
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKSR 439
QRERTL+ FR G+F +L+ATDVAARGLD+PNVDL+ L F + R G++
Sbjct: 395 HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF----VHRSGRTG 450
Query: 440 VLSEMLDADLL--SSQGSPLKEVE---TCTMTWVAGLGME 474
+ +A LL SSQ ++ +E C +V+ ME
Sbjct: 451 RAGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSAPAME 490
>gi|343172314|gb|AEL98861.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/326 (62%), Positives = 260/326 (79%), Gaps = 5/326 (1%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S DE L+++KL + Q +V +L +RGIS+LFPIQ+AVL PA++GRD+I RA+TGTGKTLAF
Sbjct: 121 SADE-LEVAKLGLPQKLVDSLIKRGISQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAF 179
Query: 154 GIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
GIPIL ++ + +++ GR P LVLAPTRELAKQVEKE E+AP L+T+CVYGG
Sbjct: 180 GIPILKRVTEGHDERSNLRRLGRLPKVLVLAPTRELAKQVEKEMKETAPYLNTVCVYGGV 239
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
+ Q AL GVD VVGTPGR+IDLI +L L EV+F+VLDEADQML+VGF EDVEVI
Sbjct: 240 SYTSQQSALSRGVDVVVGTPGRIIDLINGKSLKLGEVEFLVLDEADQMLAVGFEEDVEVI 299
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
LE LP+ RQSM+FSATMP WI+ L+ KYL NPLT+DLVGD ++KLA+GI LY+I+++
Sbjct: 300 LETLPKERQSMLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAEGIKLYAISSTAAS 359
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K +++ +IT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+ F
Sbjct: 360 KRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIPSEALHGDISQHQRERTLNGF 419
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
R G+F++L+ATDVA+RGLD+PNVDLV
Sbjct: 420 RQGKFSVLVATDVASRGLDIPNVDLV 445
>gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera]
gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/327 (62%), Positives = 254/327 (77%), Gaps = 4/327 (1%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+++++ L +++L + +V +L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 110 AAQEDELALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 169
Query: 153 FGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
FGIPI+ ++ + +EK GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 170 FGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 229
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q AL GVD VVGTPGR+IDLIK N+L L EVQ +VLDEADQML+VGF EDVEV
Sbjct: 230 VSYITQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEV 289
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE+LP RQSM+FSATMP W++ L KYL NPLT+DLVGD D+KLA+GI LY+I T+
Sbjct: 290 ILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTAT 349
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSA 388
K +I+ LIT +AKGGK IVFTQTKRDAD ++ A+ S E LHGDISQ QRERTL+
Sbjct: 350 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNG 409
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLV 415
FR G+F +L+ATDVAARGLD+PNVDL+
Sbjct: 410 FRQGKFTVLVATDVAARGLDIPNVDLI 436
>gi|357511641|ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
truncatula]
gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 753
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/362 (58%), Positives = 265/362 (73%), Gaps = 4/362 (1%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
+S +D+ + S + LDISKLD+ +V +L RGI++LFPIQ+AVL PA++GRD+
Sbjct: 89 GESEDEDFPSRTTSINADELDISKLDLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDI 148
Query: 140 IGRARTGTGKTLAFGIPILDKIIKFNEK--HGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
I RA+TGTGKTLAFGIPI++ + + + R R P LVLAPTRELAKQVEKE ESA
Sbjct: 149 IARAKTGTGKTLAFGIPIINGLDDGQDSGPYSRRRLPRALVLAPTRELAKQVEKEIKESA 208
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
P L T+C+YGG Q AL GVD VVGTPGR+IDLI N L LSEV+++VLDEADQM
Sbjct: 209 PYLKTVCIYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQM 268
Query: 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
L+VGF EDVEVILE+LP RQSM+FSATMP W++ L KYL NPLT+DLVGD ++KLA+G
Sbjct: 269 LAVGFEEDVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEG 328
Query: 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDI 377
I LY+I+ + K +I+ LIT +AKGGK IVFTQTKRDAD ++ A+ S E LHGDI
Sbjct: 329 IKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDI 388
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRP 435
SQ QRERTL+ FR G+F +L+ATDVA+RGLD+PNVDL+ L F+ S + R
Sbjct: 389 SQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 448
Query: 436 GK 437
GK
Sbjct: 449 GK 450
>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 772
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/386 (56%), Positives = 270/386 (69%), Gaps = 11/386 (2%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ L ISKL + Q +V +L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 117 DDELAISKLGLPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGI 176
Query: 156 PILDKIIKFNEKHGR--GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
PI+ I + ++ R GR P LVLAPTRELAKQVEKE +ESAP L T+CVYGG
Sbjct: 177 PIIKCITEDDKSSQRRTGRLPRVLVLAPTRELAKQVEKEINESAPYLSTVCVYGGVSYIT 236
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQMLS GF EDVEVILE L
Sbjct: 237 QRNALSRGVDVVVGTPGRIIDLINSGSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENL 296
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L KYL NPL +DLVGD ++KLA+GI LY+I+T+ K SI
Sbjct: 297 PSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYAISTNATSKRSI 356
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ L+T +AKGGK I+FTQTKRDAD ++ + S E LHGDISQ QRERTL+ FR G+
Sbjct: 357 LSDLVTVYAKGGKTIIFTQTKRDADEVSMVLTNSIASEALHGDISQHQRERTLNGFRQGK 416
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451
F +L+ATDVA+RGLD+PNVDLV L F+ S + R GK M S
Sbjct: 417 FTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLM----FTS 472
Query: 452 SQGSPLKEVE---TCTMTWVAGLGME 474
SQ +K +E C +V+ G E
Sbjct: 473 SQRRTVKSLERDVGCRFEFVSPPGTE 498
>gi|357122982|ref|XP_003563192.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 769
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/347 (59%), Positives = 262/347 (75%), Gaps = 4/347 (1%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + +VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 91 EEELAIARLGLPDQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 150
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ +II+ +E GRGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 151 PMIKQIIEQDEGRSLGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVCVYGGVSYNV 210
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++L
Sbjct: 211 QQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL 270
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I ++ K +I
Sbjct: 271 PAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSKRTI 330
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 331 LSDLITVYAKGGKTIVFTRTKRDADEVSLALTASIASEALHGDISQHQRERTLNGFRQGK 390
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
F +L+ATDVA+RGLD+PNVDL+ L F+ S + R GK+
Sbjct: 391 FTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKA 437
>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/328 (61%), Positives = 253/328 (77%), Gaps = 5/328 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
++S+DE LDISKL + Q +V L RGI+ LFPIQ+AVL P ++GRD+I RA+TGTGKTL
Sbjct: 90 NTSEDE-LDISKLGLPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTL 148
Query: 152 AFGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
AFGIPI+ ++ + E G GR P LVLAPTRELAKQVEKE ESAP L T+CVYG
Sbjct: 149 AFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPYLSTVCVYG 208
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G + Q AL GVD VVGTPGR+IDL+K N+L L EV+++VLDEADQMLS GF EDVE
Sbjct: 209 GVSYATQQNALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVE 268
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
VILE LP RQSM+FSATMP W++ L KYL NPL +DLVGD ++KLA+GI LY+I+T+
Sbjct: 269 VILESLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAEGIKLYAISTTA 328
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
K +I+ L+T +AKG K I+FT+TKRDAD ++ A+ +S E LHGDISQ QRERTL+
Sbjct: 329 TSKRTILSDLVTVYAKGEKTIIFTRTKRDADEVSMALTQSIASEALHGDISQHQRERTLN 388
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
FR G+F +L+ATDVA+RGLD+PNVDL+
Sbjct: 389 GFRQGKFTVLVATDVASRGLDIPNVDLI 416
>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/351 (59%), Positives = 263/351 (74%), Gaps = 5/351 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+ KDE L IS+L + +VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTL
Sbjct: 85 EGDKDE-LAISRLGLPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTL 143
Query: 152 AFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
AFGIP++ +II+ +E GRGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 144 AFGIPMIKQIIEQDEGRTPGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVCVYGGV 203
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
+ Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE I
Sbjct: 204 SYNTQQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETI 263
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
L++LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI L++I +
Sbjct: 264 LQQLPAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLFAIPLTTTS 323
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K +I+ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ F
Sbjct: 324 KRTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTTSIASEALHGDISQHQRERTLNGF 383
Query: 390 RDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
R G+F +L+ATDVA+RGLD+PNVDL+ L F+ S + R GK+
Sbjct: 384 RQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKA 434
>gi|356574052|ref|XP_003555166.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/392 (55%), Positives = 278/392 (70%), Gaps = 12/392 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D + D LDISKL + +V +L +RGI+ LFPIQ+AVL PA++G+D+I RA+TGTGKT
Sbjct: 86 DTNVSDHELDISKLGLPSPLVHSLQQRGITSLFPIQRAVLVPALEGKDIIARAKTGTGKT 145
Query: 151 LAFGIPILDKIIKFNEK--HGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
LAFGIPIL + +E+ H R GR P LVLAPTRELAKQVEKE ESAP L T+CVYG
Sbjct: 146 LAFGIPILKGLTDDDEQSSHRRSGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYG 205
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q AL +GVD VVGTPGR+IDL+ N+L LSEVQ++VLDEAD+ML+VGF EDVE
Sbjct: 206 GVSYVTQQGALSHGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADRMLAVGFEEDVE 265
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
VIL+++P RQ+M+FSATMP W++ L+ KYL NPLT+DLVG+ ++KLA+GI LY+++ +
Sbjct: 266 VILDKVPAQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALSATA 325
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
K +++ LIT +AKGGK IVFTQTK+DAD ++ A+ S E LHGDISQ QRERTL+
Sbjct: 326 SSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQHQRERTLN 385
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEML 445
FR G+F +L+ATDVAARGLD+PNVDLV L F+ S + R GK M
Sbjct: 386 GFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILM- 444
Query: 446 DADLLSSQGSPLKEVE---TCTMTWVAGLGME 474
SSQ ++ +E C +V+ ME
Sbjct: 445 ---YTSSQRRTVRSLERDVGCKFEFVSPPAME 473
>gi|357122984|ref|XP_003563193.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 749
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/347 (59%), Positives = 262/347 (75%), Gaps = 4/347 (1%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + +VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 91 EEELAIARLGLPDQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 150
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ +II+ +E GRGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 151 PMIKQIIEQDEGRSLGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVCVYGGVSYNV 210
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++L
Sbjct: 211 QQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL 270
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I ++ K +I
Sbjct: 271 PAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSKRTI 330
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 331 LSDLITVYAKGGKTIVFTRTKRDADEVSLALTASIASEALHGDISQHQRERTLNGFRQGK 390
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
F +L+ATDVA+RGLD+PNVDL+ L F+ S + R GK+
Sbjct: 391 FTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKA 437
>gi|356534927|ref|XP_003536002.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/328 (61%), Positives = 253/328 (77%), Gaps = 3/328 (0%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D + D LDISKL + +V +L +RGI LFPIQ+AVL PA++G+D+I RA+TGTGKT
Sbjct: 84 DTNVSDHELDISKLGLPSPLVHSLQKRGIISLFPIQRAVLVPALEGKDIIARAKTGTGKT 143
Query: 151 LAFGIPILDKIIKFNEK--HGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
LAFGIPIL + +E+ H R GR P LVLAPTRELAKQVEKE ESAP L T+CVYG
Sbjct: 144 LAFGIPILKGLTNDDEQSPHRRSGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYG 203
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q AL GVD VVGTPGR+IDL+ N+L LSEVQ++VLDEADQML+VGF EDVE
Sbjct: 204 GVSYVTQQSALSRGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADQMLAVGFEEDVE 263
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
VIL+++P RQ+M+FSATMP W++ L+ KYL NPLT+DLVG+ ++KLA+GI LY++ +
Sbjct: 264 VILDKVPTQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALLATA 323
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
K +++ LIT +AKGGK IVFTQTK+DAD ++ A+ S E LHGDISQ QRERTL+
Sbjct: 324 TSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGDISQHQRERTLN 383
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
FR G+F +L+ATDVAARGLD+PNVDLV
Sbjct: 384 GFRQGKFTVLVATDVAARGLDIPNVDLV 411
>gi|449517104|ref|XP_004165586.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like, partial [Cucumis sativus]
Length = 726
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/326 (62%), Positives = 252/326 (77%), Gaps = 3/326 (0%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ D+ L ISKL++ Q + AL +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 106 AADDDELAISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 165
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCL---VLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
FGIPIL K+ + +E R VL PTRELAKQVEKE ESAP L+T+CVYGG
Sbjct: 166 FGIPILKKLTEDDESRSLRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGV 225
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
Q AL GVD VVGTPGR+IDLI N+LNL EV+++VLDEADQML+VGF EDVEVI
Sbjct: 226 SYITQQNALSRGVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVI 285
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
LE+LP RQ+M+FSATMP W++ L KYL NPLT+DLVGD D+KLA+GI L++I T+
Sbjct: 286 LEKLPSQRQNMLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATS 345
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K +I+ L+T +AKGGK IVFTQTKRDAD ++ A+A S E LHGDISQ QRERTL+ F
Sbjct: 346 KQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGF 405
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
R G+F +L+ATDVA+RGLD+PNVDLV
Sbjct: 406 RQGKFTVLVATDVASRGLDIPNVDLV 431
>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 748
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/335 (62%), Positives = 254/335 (75%), Gaps = 7/335 (2%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
D+ V DD E L ISKL + Q + +L +RGI+ LFPIQ+AVL PA+QGRD+I RA+
Sbjct: 91 DNNVVADDG---EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAK 147
Query: 145 TGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200
TGTGKTLAFGIPI+ ++ + ++ GR P LVLAPTRELAKQVEKE ESAP L
Sbjct: 148 TGTGKTLAFGIPIIKRLTEEAGDYSAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYL 207
Query: 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV+++VLDEADQML+V
Sbjct: 208 STVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAV 267
Query: 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL 320
GF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DLVGD D+KLA+GI L
Sbjct: 268 GFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL 327
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQS 380
Y+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ
Sbjct: 328 YAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQH 387
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDLV
Sbjct: 388 QRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422
>gi|414873743|tpg|DAA52300.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 743
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/381 (55%), Positives = 273/381 (71%), Gaps = 11/381 (2%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + ++VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 85 NEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 144
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++I+ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 145 PMIKQLIEQDDGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNV 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++L
Sbjct: 205 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K ++
Sbjct: 265 PAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTV 324
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TK+DAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 325 LSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGK 384
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451
F +L+ATDVAARGLD+PNVDL+ L F+ S + R GK+ M S
Sbjct: 385 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILM----FTS 440
Query: 452 SQGSPLKEVE---TCTMTWVA 469
SQ +K +E C +++
Sbjct: 441 SQKRTVKSLERDVGCNFEFIS 461
>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
Length = 744
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/381 (55%), Positives = 273/381 (71%), Gaps = 11/381 (2%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + ++VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 85 NEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 144
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++I+ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 145 PMIKQLIEQDDGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNV 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++L
Sbjct: 205 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K ++
Sbjct: 265 PAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTATSKRTV 324
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TK+DAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 325 LSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGK 384
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451
F +L+ATDVAARGLD+PNVDL+ L F+ S + R GK+ M S
Sbjct: 385 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILM----FTS 440
Query: 452 SQGSPLKEVE---TCTMTWVA 469
SQ +K +E C +++
Sbjct: 441 SQKRTVKSLERDVGCNFEFIS 461
>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
(Pfam: helicase_C.hmm, score: 90.11), similar to
DEAD-box h, partial [Arabidopsis thaliana]
Length = 477
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/354 (59%), Positives = 258/354 (72%), Gaps = 12/354 (3%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG---------RGRNPLCLVLAP 181
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ E+ G GR P LVLAP
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRL---TEEAGDYTAFRSLRSGRLPKFLVLAP 190
Query: 182 TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241
TRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L
Sbjct: 191 TRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSL 250
Query: 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
L EV+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NP
Sbjct: 251 KLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNP 310
Query: 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA 361
L +DLVGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++
Sbjct: 311 LNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS 370
Query: 362 HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
A++ S E LHGDISQ QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDLV
Sbjct: 371 LALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 424
>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/328 (60%), Positives = 251/328 (76%), Gaps = 5/328 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
++S+DE LD+SKL + +V L RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTL
Sbjct: 127 NTSEDE-LDVSKLGLPHRLVQTLQNRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTL 185
Query: 152 AFGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
AFGIPI+ ++ + E G GR P LVLAPTRELAKQVEKE ESAP L ++CVYG
Sbjct: 186 AFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPYLSSVCVYG 245
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q AL GVD VVGTPGR+IDL+K N+L L EV+++VLDEADQMLS GF EDVE
Sbjct: 246 GVSYVTQQSALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVE 305
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
VILE LP RQSM+FSATMP W++ L KYL NPL +DLVGD ++KLA+GI LY+++ +
Sbjct: 306 VILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYALSATA 365
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
K +I+ L+T +AKGGK I+FTQTKRDAD ++ A+ + E LHGDISQ QRERTL+
Sbjct: 366 ASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGDISQHQRERTLN 425
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
FR G+F +L+ATDVA+RGLD+PNVDL+
Sbjct: 426 GFRQGKFTVLVATDVASRGLDIPNVDLI 453
>gi|449435589|ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cucumis sativus]
Length = 748
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/350 (60%), Positives = 260/350 (74%), Gaps = 5/350 (1%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ D+ L ISKL++ Q + AL +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 106 AADDDELAISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 165
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCL---VLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
FGIPIL K+ + +E R VL PTRELAKQVEKE ESAP L+T+CVYGG
Sbjct: 166 FGIPILKKLTEDDESRSLRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGV 225
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
Q AL GVD VVGTPGR+IDLI N+LNL EV+++VLDEADQML+VGF EDVEVI
Sbjct: 226 SYITQQNALSRGVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVI 285
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
LE+LP RQ+M+FSATMP W++ L KYL NPLT+DLVGD D+KLA+GI L++I T+
Sbjct: 286 LEKLPSQRQNMLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATS 345
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K +I+ L+T +AKGGK IVFTQTKRDAD ++ A+A S E LHGDISQ QRERTL+ F
Sbjct: 346 KQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGDISQHQRERTLNGF 405
Query: 390 RDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGK 437
R G+F +L+ATDVA+RGLD+PNVDLV L F+ S + R GK
Sbjct: 406 RQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGK 455
>gi|79328737|ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|108861893|sp|Q8L7S8.2|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
Precursor
gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 748
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/349 (59%), Positives = 257/349 (73%), Gaps = 4/349 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK 366
VGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
S E LHGDISQ QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDLV
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422
>gi|30690260|ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 747
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/349 (59%), Positives = 257/349 (73%), Gaps = 4/349 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK 366
VGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
S E LHGDISQ QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDLV
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422
>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
Length = 748
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/349 (59%), Positives = 257/349 (73%), Gaps = 4/349 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK 366
VGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
S E LHGDISQ QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDLV
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422
>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
Length = 748
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/349 (59%), Positives = 257/349 (73%), Gaps = 4/349 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK 366
VGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKNIVFTQTKRDADEVSLALSN 373
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
S E LHGDISQ QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDLV
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422
>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/330 (62%), Positives = 261/330 (79%), Gaps = 5/330 (1%)
Query: 91 DDSSKDEG-LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
++S DE L ++ L I Q +V ALA+RGI KLFPIQ+AVL+PAMQGRD+IGRA+TGTGK
Sbjct: 38 NESVDDEDELAVANLGIPQAVVDALAKRGIEKLFPIQRAVLDPAMQGRDLIGRAKTGTGK 97
Query: 150 TLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
TLAFGIPI+ I+K +E GR P LVLAPTRELAKQVE+EF ESAP L T+CV
Sbjct: 98 TLAFGIPIIHNILKAHEADRTSRRSGRAPRALVLAPTRELAKQVEREFMESAPMLSTVCV 157
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG I+ Q R L GVD VGTPGR+IDLI+R +L+L +V ++VLDEADQML+VGF ED
Sbjct: 158 YGGVSITTQQRQLQRGVDVAVGTPGRIIDLIERRSLSLRDVSYLVLDEADQMLAVGFEED 217
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
VE ILE++P+ RQSM+FSATMP W++ L+ KYLK+PLT+DLVGDS++KLA+GI + ++
Sbjct: 218 VERILEQMPEERQSMLFSATMPNWVKKLSKKYLKSPLTIDLVGDSNEKLAEGIKMLAVCI 277
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
K +++ LI+ H GK IVFTQTKRDAD +A + ++ CE LHGDI+QSQRERT
Sbjct: 278 PPAAKRTVLNDLISVHGSVGKTIVFTQTKRDADDVASVLGRTLGCEALHGDITQSQRERT 337
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLV 415
L++FR+GRF++L+ATDVAARGLD+PNVDLV
Sbjct: 338 LASFREGRFSVLVATDVAARGLDIPNVDLV 367
>gi|413932546|gb|AFW67097.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 745
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/347 (58%), Positives = 261/347 (75%), Gaps = 4/347 (1%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + ++VA L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFGI
Sbjct: 85 EEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALGGRDLIARAKTGTGKTLAFGI 144
Query: 156 PILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 145 PMIKQLMEQDDGRSTRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNV 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++L
Sbjct: 205 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI L++I + K +I
Sbjct: 265 PADRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLHAIPLTATSKRTI 324
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LIT +AKGGK IVFT+TK+DAD ++ A+ S E LHGDISQ QRERTL+ FR G+
Sbjct: 325 LSDLITVYAKGGKTIVFTRTKKDADEVSLALTTSIASEALHGDISQHQRERTLNGFRQGK 384
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
F +L+ATDVAARGLD+PNVDL+ L F+ S + R GK+
Sbjct: 385 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKA 431
>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
gi|113550244|dbj|BAF13687.1| Os03g0827700, partial [Oryza sativa Japonica Group]
Length = 723
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/344 (58%), Positives = 258/344 (75%), Gaps = 4/344 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFGIP++
Sbjct: 69 LAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMI 128
Query: 159 DKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q
Sbjct: 129 KQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQN 188
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++LP
Sbjct: 189 ALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAE 248
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K +++
Sbjct: 249 RQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSD 308
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +
Sbjct: 309 LITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTV 368
Query: 397 LIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
L+ATDVAARGLD+PNVDL+ L F+ S + R GK+
Sbjct: 369 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKA 412
>gi|143455890|sp|Q0DM51.2|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
Flags: Precursor
gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
Length = 758
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/344 (58%), Positives = 258/344 (75%), Gaps = 4/344 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFGIP++
Sbjct: 104 LAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMI 163
Query: 159 DKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q
Sbjct: 164 KQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQN 223
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++LP
Sbjct: 224 ALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAE 283
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K +++
Sbjct: 284 RQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSD 343
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +
Sbjct: 344 LITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTV 403
Query: 397 LIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
L+ATDVAARGLD+PNVDL+ L F+ S + R GK+
Sbjct: 404 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKA 447
>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
Length = 614
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/321 (60%), Positives = 246/321 (76%), Gaps = 2/321 (0%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L I+ L I IV ALA+RGI LFPIQ+AV +PAMQG D+I RA+TGTGKTLAFGIP
Sbjct: 2 EELAIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIP 61
Query: 157 ILDKII--KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
ILD I K + + P ++LAPTRELAKQVE E +AP L +C+YGG I Q
Sbjct: 62 ILDNISREKSSMQFRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVVCIYGGVSIEGQ 121
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
R L V+ VVGTPGRVID+++R L L+EV+F +LDEADQML+VGFAE+VE I+++LP
Sbjct: 122 RRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLP 181
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
R +M+FSATMP WIR+LT+KYLKNP +DLVG+++ K+A+GI LY+++T+ K ++
Sbjct: 182 LQRHTMLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLL 241
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L+T +AKGGK IVFT+TKRD D +A M++S CE LHGDISQ QRE+TLS FRDGRF
Sbjct: 242 ADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGDISQYQREKTLSGFRDGRF 301
Query: 395 NILIATDVAARGLDVPNVDLV 415
N+L+ATDVAARGLD+PNVDL+
Sbjct: 302 NVLVATDVAARGLDIPNVDLI 322
>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
Length = 597
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/321 (60%), Positives = 246/321 (76%), Gaps = 2/321 (0%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L I+ L I IV ALA+RGI LFPIQ+AV +PAMQG D+I RA+TGTGKTLAFGIP
Sbjct: 2 EELAIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIP 61
Query: 157 ILDKII--KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
ILD I K + + P ++LAPTRELAKQVE E +AP L +C+YGG I Q
Sbjct: 62 ILDNISREKSSMQFRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVVCIYGGVSIEGQ 121
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
R L V+ VVGTPGRVID+++R L L+EV+F +LDEADQML+VGFAE+VE I+++LP
Sbjct: 122 RRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLP 181
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
R +M+FSATMP WIR+LT+KYLKNP +DLVG+++ K+A+GI LY+++T+ K ++
Sbjct: 182 LQRHTMLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLL 241
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L+T +AKGGK IVFT+TKRD D +A M++S CE LHGDISQ QRE+TLS FRDGRF
Sbjct: 242 ADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGDISQYQREKTLSGFRDGRF 301
Query: 395 NILIATDVAARGLDVPNVDLV 415
N+L+ATDVAARGLD+PNVDL+
Sbjct: 302 NVLVATDVAARGLDIPNVDLI 322
>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
Length = 641
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/350 (58%), Positives = 261/350 (74%), Gaps = 4/350 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S D+ L I+ L +SQ+IV LA RGI+ LFPIQ+AV +PAM+G D+I RA+TGTGKTL
Sbjct: 14 ESKADDELAIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTL 73
Query: 152 AFGIPILDKIIKFNEKHGRGR--NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
AFGIPI+D+I + K R P LVLAPTRELAKQVE EF ES L T+CVYGG
Sbjct: 74 AFGIPIMDRIYRSRSKSQRRSFRGPAALVLAPTRELAKQVETEFMESGKELATVCVYGGV 133
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
I Q R L GVD VGTPGR+IDL+++ L+LS+V+ +VLDEADQML+VGF EDVE I
Sbjct: 134 SIMSQKRLLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKI 193
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
+E+LP+ RQ+M+FSATMP W++ L+ K+L PLT+DLVG+SD+KLA+GI LY++ TS
Sbjct: 194 MEQLPEKRQNMLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAA 253
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
K I+ +IT + KGGK IVFTQTKRDA+ ++ AM ++ CE LHGDI+Q QRE+TL+AF
Sbjct: 254 KRKILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGDIAQFQREKTLAAF 313
Query: 390 RDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGK 437
R+GRF IL+ATDVAARGLD+ +VDL+ L R F+ S + R GK
Sbjct: 314 REGRFLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGK 363
>gi|384244948|gb|EIE18444.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 674
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/358 (55%), Positives = 259/358 (72%), Gaps = 5/358 (1%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
+ + D++ +DE L ++ +S + VAAL +R I LFPIQK V PA GRD+IGRART
Sbjct: 36 EVLEVDETQQDESLLLANCGLSDETVAALGKRNIKALFPIQKHVFGPARAGRDLIGRART 95
Query: 146 GTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203
G+GKTLAF +P+L+ ++K N + RGR+P C++LAPTRELAKQVEKEF ESAP L+
Sbjct: 96 GSGKTLAFALPVLENLLKENSQSPPQRGRSPRCIILAPTRELAKQVEKEFQESAPGLNVG 155
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
C YGG I Q+R L GVD VGTPGRVIDLI RN L+LS +FV+LDEAD MLS+GF+
Sbjct: 156 CFYGGVDIGGQIRQLRSGVDVAVGTPGRVIDLINRNCLDLSLTRFVILDEADMMLSMGFS 215
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYS 322
EDVE+IL+ +P RQ+M+FSATMP W++++T K+LKNP VDLVGD+ K+ D I +
Sbjct: 216 EDVEIILDSVPAERQTMLFSATMPSWVKNITRKHLKNPALVDLVGDAQSGKMPDAIKTMA 275
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQR 382
+ + + SI+ LIT HA GGKCIVFTQTKR+AD +A +++ + CE LHGDISQ+QR
Sbjct: 276 VHVTQEARRSILVDLITVHALGGKCIVFTQTKREADEVAASLSLVHPCEALHGDISQAQR 335
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
E+ L FR+G+F L+ATDVAARGLD+P+VDLV L R FL S + R GK+
Sbjct: 336 EQVLKNFRNGKFTALVATDVAARGLDIPDVDLVVHYDLPRDTEAFLHRSGRTGRAGKT 393
>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
Length = 640
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/343 (58%), Positives = 257/343 (74%), Gaps = 4/343 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L I+ L +SQ+IV LA RGI+ LFPIQ+AV +PAM+G D+I RA+TGTGKTLAFGIPI+
Sbjct: 3 LAIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIM 62
Query: 159 DKIIKFNEKHGRGR--NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
D+I + K R P LVLAPTRELAKQVE EF ES L T+CVYGG I Q R
Sbjct: 63 DRIYRSRSKSQRRSFRGPAALVLAPTRELAKQVETEFMESGKELATVCVYGGVSIMSQKR 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD VGTPGR+IDL+++ L+LS+V+ +VLDEADQML+VGF EDVE I+E+LP+
Sbjct: 123 LLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLPEK 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMP W++ L+ K+L PLT+DLVG+SD+KLA+GI LY++ TS K I+
Sbjct: 183 RQNMLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRKILSD 242
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+IT + KGGK IVFTQTKRDA+ ++ AM ++ CE LHGDI+Q QRE+TL+AFR+GRF I
Sbjct: 243 VITVYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGDIAQFQREKTLAAFREGRFLI 302
Query: 397 LIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGK 437
L+ATDVAARGLD+ +VDL+ L R F+ S + R GK
Sbjct: 303 LVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGK 345
>gi|357442015|ref|XP_003591285.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480333|gb|AES61536.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 615
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/338 (59%), Positives = 253/338 (74%), Gaps = 13/338 (3%)
Query: 89 AYDDS-------SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIG 141
A+DD+ SK+E LDISKL +V +L RRGI+ LFPIQ+AVL PA++GRD+I
Sbjct: 71 AFDDANDVPVAVSKNE-LDISKLGFPSQLVDSLQRRGITSLFPIQRAVLLPALEGRDIIA 129
Query: 142 RARTGTGKTLAFGIPILDKIIKFNEKHG----RGRNPLCLVLAPTRELAKQVEKEFHESA 197
RA+TGTGKTLAFGIPI+ + + NE+ GR P LVLAPTRELAKQVEKE ESA
Sbjct: 130 RAKTGTGKTLAFGIPIIKGLTE-NEQSNMMRRSGRLPKVLVLAPTRELAKQVEKEIKESA 188
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
P L+T+CVYGG Q AL GVD VVGTPGR+IDLI L L+E+Q++VLDEADQM
Sbjct: 189 PYLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGGTLKLAEIQYLVLDEADQM 248
Query: 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
L+VGF E VE ILE +P RQ M+FSATMP W++ L+ K+L NPLT+DLVGD ++KLA+G
Sbjct: 249 LAVGFEESVEEILESIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEG 308
Query: 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDI 377
I LY+++ + K I+ LI+ +A GGK IVFT+TKRDAD ++ ++ S +PLHGDI
Sbjct: 309 IKLYAVSATSTSKRRILYGLISAYANGGKTIVFTRTKRDADEISLSLTNSIASKPLHGDI 368
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
SQ QRE+TL+ FR GRF +L+ATDVA+RGLD+PNVDL+
Sbjct: 369 SQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLI 406
>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
Length = 779
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/358 (56%), Positives = 258/358 (72%), Gaps = 18/358 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQ--------------KAVLEPAMQGRDMIGRAR 144
L I++L + + +V+ L +RGI+ LFPIQ +AVL PA+ GRD+I RA+
Sbjct: 111 LAIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLIARAK 170
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT 202
TGTGKTLAFGIP++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T
Sbjct: 171 TGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLST 230
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+CVYGG + Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF
Sbjct: 231 VCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGF 290
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322
EDVE IL++LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+
Sbjct: 291 EEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYA 350
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQR 382
I + K +++ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QR
Sbjct: 351 IPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQR 410
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
ERTL+ FR G+F +L+ATDVAARGLD+PNVDL+ L F+ S + R GK+
Sbjct: 411 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKA 468
>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
Length = 445
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/323 (59%), Positives = 249/323 (77%), Gaps = 4/323 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQK-AVLEPAMQGRDMIGRARTGTGKTLAFGI 155
E L ++KL I +IV ALA++ I LFP+Q+ AV +PAM+GRD I RA+TGTGKTLAFG+
Sbjct: 2 EELAVAKLGIDPEIVRALAQKNIINLFPVQQSAVYQPAMKGRDFIARAKTGTGKTLAFGL 61
Query: 156 PILDKI-IKFNEKHGRGR--NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
PIL I ++ E R + P C+V+APTRELAKQVEKE +AP L +C+YGG I
Sbjct: 62 PILHTITVERREATSRTQPGCPRCIVMAPTRELAKQVEKELTSTAPHLTLVCIYGGVSIE 121
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q R+L+ +D VVGTPGRVID+++R +L L+ V+F+VLDEADQML+ GFAEDVE I+ER
Sbjct: 122 SQRRSLERPIDVVVGTPGRVIDMLQRGSLLLNRVKFMVLDEADQMLATGFAEDVEKIMER 181
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP+ RQ+MMFSATMP W+++L +++++PL VDLVGD+D+KLA+GI LYS S Y K
Sbjct: 182 LPKQRQTMMFSATMPSWVKNLLRRFMQDPLVVDLVGDNDEKLAEGIKLYSCEASDYNKGP 241
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
++ +L+ + KGGK IVF +TKRD +A AM++S CE LHGDI Q QRERTLS FRDG
Sbjct: 242 LLKELVNSYGKGGKVIVFAKTKRDTHNVAQAMSRSVPCEALHGDIPQFQRERTLSGFRDG 301
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
RF++L+ATDVAARGLD+PNVDLV
Sbjct: 302 RFSVLVATDVAARGLDIPNVDLV 324
>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
Length = 786
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 260/373 (69%), Gaps = 44/373 (11%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+++++ L +++L + +V +L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 110 AAQEDELALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 169
Query: 153 FGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
FGIPI+ ++ + +EK GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 170 FGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 229
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q AL GVD VVGTPGR+IDLIK N+L L EVQ +VLDEADQML+VGF EDVEV
Sbjct: 230 VSYITQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEV 289
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL---------------------- 306
ILE+LP RQSM+FSATMP W++ L KYL NPLT+DL
Sbjct: 290 ILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTLD 349
Query: 307 -VGDSDQKLADGISLYSIATSMYEKPSIIGQLITE---------------HAKGGKCIVF 350
VGD D+KLA+GI LY+I T+ K +I+ LIT+ +AKGGK IVF
Sbjct: 350 HVGDHDEKLAEGIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIVF 409
Query: 351 TQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
TQTKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +L+ATDVAARGLD+P
Sbjct: 410 TQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 469
Query: 411 NVDL--VELVVLE 421
NVDL V+L+ L+
Sbjct: 470 NVDLKYVDLLFLQ 482
>gi|255559126|ref|XP_002520585.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223540245|gb|EEF41818.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 323
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/260 (71%), Positives = 217/260 (83%), Gaps = 13/260 (5%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDD------------SSKDEGLDISKLDIS 107
R H S PLDFK+S+ Q +AVDDY Y++ +S +EGL+I KL I+
Sbjct: 47 RGIHVKSGPLDFKASLMSQAEFAAVDDY-GYEEEKGGFGKGNNDINSDEEGLEIGKLGIA 105
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q+IV+ALARRGI+KLFPIQKAVLEPAMQGRD+ GRARTGTGKTLAFGIPILDKII+FN K
Sbjct: 106 QEIVSALARRGITKLFPIQKAVLEPAMQGRDLFGRARTGTGKTLAFGIPILDKIIQFNAK 165
Query: 168 HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
HGRGRNPL LV+APTRELA+QVEKEFHESAPSLDTIC+YGGTPIS QM+ LDYGVD VVG
Sbjct: 166 HGRGRNPLALVMAPTRELARQVEKEFHESAPSLDTICLYGGTPISRQMKELDYGVDVVVG 225
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR+IDL+KR +LNLSE+QFVVLDEADQML VGF +D+E I +RLP+NR SM+FSATMP
Sbjct: 226 TPGRIIDLMKRGSLNLSEIQFVVLDEADQMLGVGFVDDIETIFQRLPKNRHSMLFSATMP 285
Query: 288 PWIRSLTNKYLKNPLTVDLV 307
WI++L YLK+PLT+DLV
Sbjct: 286 SWIKNLVRNYLKDPLTIDLV 305
>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
Length = 790
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/323 (56%), Positives = 240/323 (74%), Gaps = 1/323 (0%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+K + + + +S AAL +RGI LFPIQ +VLEPA+QGRD++GRARTGTGKTL F
Sbjct: 128 NKRDPMHVDNFPLSDITKAALRKRGIETLFPIQASVLEPALQGRDVVGRARTGTGKTLGF 187
Query: 154 GIPILDKIIKF-NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
+PI++ ++ + + R RNP C+VLAPTRELA QVEKE + PSL T+CVYGG IS
Sbjct: 188 SLPIIESLLSNPSNRTDRSRNPRCIVLAPTRELANQVEKEIQATVPSLRTLCVYGGVAIS 247
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
+Q R L GVD VVGTPGR+IDLI+R +LNL ++++ VLDEADQML+VGF EDVE I+E
Sbjct: 248 NQERPLRRGVDIVVGTPGRLIDLIQRGSLNLHDIEYCVLDEADQMLAVGFEEDVERIMEE 307
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P+ RQ+ +FSATMP W+ +T KYL + +T+DLVG +QK+AD I + S A S + +
Sbjct: 308 IPEQRQTFLFSATMPSWVTRITQKYLADHVTIDLVGSQEQKVADTIDVMSCACSHTSRTT 367
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I+ L+T + KG K I FTQTKR+AD + A+ + E LHGDI+Q+QRERTL FRDG
Sbjct: 368 ILADLVTVYGKGAKAICFTQTKREADEVTAALGRRMATEVLHGDIAQAQRERTLKRFRDG 427
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
RF++L+ATDVAARGLD+ +VDLV
Sbjct: 428 RFSVLVATDVAARGLDITDVDLV 450
>gi|334187954|ref|NP_001190402.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 655
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/293 (64%), Positives = 227/293 (77%), Gaps = 4/293 (1%)
Query: 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPT 182
+AVL PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPT
Sbjct: 37 RAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPT 96
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L
Sbjct: 97 RELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLK 156
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302
L EV+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL
Sbjct: 157 LGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPL 216
Query: 303 TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAH 362
+DLVGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++
Sbjct: 217 NIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSL 276
Query: 363 AMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
A++ S E LHGDISQ QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDLV
Sbjct: 277 ALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 329
>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
Length = 683
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/319 (58%), Positives = 234/319 (73%), Gaps = 3/319 (0%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D+ +S+ V AL +RG+ LFPIQ+AVL PAM G+D++GRARTGTGKTLAF +P+++
Sbjct: 26 DVDNFGMSETTVQALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPVIE 85
Query: 160 KIIKFNEKHGRGRN--PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217
K++ G P C+VLAPTRELAKQVE E +AP+LDT CVYGGTPI Q
Sbjct: 86 KLLSNGRGSGGRGYRNPKCIVLAPTRELAKQVENEIFITAPTLDTACVYGGTPIGQQESK 145
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGR++DL+ R AL+LSE++FVVLDEADQML+VGF EDVE IL P R
Sbjct: 146 LRRGVDIVVGTPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPAGR 205
Query: 278 QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q+ +FSATMP W++ +T K+LK + VDLVGD+ QK+AD I L + A S + SI+
Sbjct: 206 QTFLFSATMPQWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVSQTSRTSIVMD 265
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
L+T +AK KCI FTQTKR AD L A+ K +CE LHGDI+Q+QRERTL FRD RF +
Sbjct: 266 LVTVYAKDKKCICFTQTKRAADELTAALGKRVSCEVLHGDIAQAQRERTLQRFRDNRFTV 325
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARGLD+ +VDLV
Sbjct: 326 LIATDVAARGLDISDVDLV 344
>gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
Length = 803
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/315 (57%), Positives = 231/315 (73%), Gaps = 1/315 (0%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I IS AAL +RGI LFPIQ AVL PA++GRD++GRARTGTGKTL F +PI++
Sbjct: 146 IDNFPISVLTKAALRKRGIESLFPIQSAVLAPALEGRDIVGRARTGTGKTLGFSLPIIES 205
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ N R R P C+VLAPTRELA QVE E + PS+ T+CVYGG I++Q RAL
Sbjct: 206 LLS-NPSDARNRRPRCIVLAPTRELANQVEAEIQLTVPSMRTVCVYGGVAITNQERALRN 264
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLI+R +L L ++++ VLDEADQML+VGF EDVE I++ +P+ RQ+
Sbjct: 265 GVDFVVGTPGRLIDLIQRGSLQLQDIEYCVLDEADQMLAVGFEEDVERIMQEIPEERQTF 324
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP W++ LT KYLK + +DLVGDS QK+AD I + S A S + I+ L+T
Sbjct: 325 LFSATMPSWVKQLTRKYLKEHVNIDLVGDSKQKVADTIDILSCACSHQSRTMILADLVTV 384
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ KG K I FTQTKR+AD + A+ + E LHGDI+Q+QRERTL FRD RF++L+AT
Sbjct: 385 YGKGAKAICFTQTKREADEVTAALGRRMATEVLHGDIAQAQRERTLKRFRDNRFSVLVAT 444
Query: 401 DVAARGLDVPNVDLV 415
DVAARGLD+ +VDLV
Sbjct: 445 DVAARGLDITDVDLV 459
>gi|412988910|emb|CCO15501.1| predicted protein [Bathycoccus prasinos]
Length = 935
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 176/330 (53%), Positives = 231/330 (70%), Gaps = 15/330 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I+ ++ +AAL ++GI LFPIQ A LEPA GRD++ RA+TGTGKTLAF +PI++K
Sbjct: 222 INNFNLHPITIAALKKKGIETLFPIQVAALEPAQSGRDVVARAKTGTGKTLAFSLPIVEK 281
Query: 161 IIKFNEKHG---------------RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
++ +E+ R + P C+VLAPTRELA+QVE+E + APS +T+ V
Sbjct: 282 FLREDEEENNRGDEDGEGTRRRGSRDKRPRCIVLAPTRELAQQVEREIYSLAPSFETLTV 341
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG PI Q L GVD VVGTPGRV+DL+ R L+LS VQ VVLDEADQML+VGF ED
Sbjct: 342 YGGAPIGPQESKLRRGVDFVVGTPGRVMDLLNRGTLDLSRVQHVVLDEADQMLAVGFEED 401
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
VE ILE +P+NRQ+ +FSATMP W++ L K+L + + +DLVG+ K+ I L S +
Sbjct: 402 VETILEDVPKNRQTFLFSATMPHWVKKLQQKFLVDQVNIDLVGEDTGKINKDIDLMSCSV 461
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
+ K +++ L+T HAKG K IVFTQTKRDAD + ++ K + E LHGDI+Q+QRERT
Sbjct: 462 AFPSKCAVLMDLVTVHAKGNKTIVFTQTKRDADEVTASLGKRVSTEVLHGDIAQAQRERT 521
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLV 415
L FR +F++L+ATDVAARGLDV NVDLV
Sbjct: 522 LQRFRQDKFSVLVATDVAARGLDVDNVDLV 551
>gi|414883512|tpg|DAA59526.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 329
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 169/250 (67%), Positives = 205/250 (82%), Gaps = 1/250 (0%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R FH + PL F+S+ A + D+ ++GL+I++L S IV LA RGI
Sbjct: 52 RAFHCSTTPLGFRSTPASWAGPCPGEGEGEGVDTGAEKGLEIARLGTSPRIVEKLAARGI 111
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+DKI+ +NEK G GRNPL ++L
Sbjct: 112 TRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSYNEKTGNGRNPLAIIL 171
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF ESAP LDT+CVYGG PI+ QMRAL+YGVD VVGTPGRVIDL++R
Sbjct: 172 APTRELARQVEKEFRESAP-LDTLCVYGGVPINQQMRALNYGVDIVVGTPGRVIDLLRRG 230
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
LNLS++QFVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR ++NKYLK
Sbjct: 231 VLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISNKYLK 290
Query: 300 NPLTVDLVGD 309
+P+ +DLV D
Sbjct: 291 DPVIIDLVSD 300
>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787, partial [Chlorella
variabilis]
Length = 689
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 181/345 (52%), Positives = 239/345 (69%), Gaps = 6/345 (1%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D L + +S+ V AL RGI+ LFPIQK V EPAM+G D+I RA+TG+GKTLAF I
Sbjct: 148 DPSLLLVNCGLSEGSVRALEERGITSLFPIQKTVFEPAMRGADLIARAKTGSGKTLAFAI 207
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
PI++KI+ R P CLVLAPTRELAKQVE+E +AP L C YGG PI Q+
Sbjct: 208 PIIEKIMAGPRNL---RKPQCLVLAPTRELAKQVEREIAATAPGLGCGCYYGGNPIGPQL 264
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+ L GVD VVGTPGR+IDLI ++AL+LS V+FVVLDEADQML+VGF +DVE ILE +PQ
Sbjct: 265 KELRRGVDIVVGTPGRIIDLIDQDALDLSMVRFVVLDEADQMLNVGFEKDVETILENVPQ 324
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+M+FSAT+P W++ L +YL NP +DLVG+ + D S+ ++A + S++
Sbjct: 325 ERQTMLFSATLPRWVKKLVKQYLNNPENIDLVGEGNTG-QDPDSITALAVPADARRSVLV 383
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+T + +GGK IVFTQTKR+AD +A ++ C LHGD+SQ +RE+ L++FR +
Sbjct: 384 DLLTVYGEGGKAIVFTQTKREADEVAASVGGHLPCGALHGDMSQREREKVLASFRANKLM 443
Query: 396 ILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
+L+ATDVAARGLD+P+VD+V L + FL S + R GKS
Sbjct: 444 VLVATDVAARGLDIPDVDVVVHYELPQDPESFLHRSGRTGRAGKS 488
>gi|212274773|ref|NP_001130659.1| uncharacterized protein LOC100191761 [Zea mays]
gi|194689766|gb|ACF78967.1| unknown [Zea mays]
Length = 598
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 172/305 (56%), Positives = 214/305 (70%), Gaps = 9/305 (2%)
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTP
Sbjct: 16 RGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGTP 75
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W
Sbjct: 76 GRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGRQSMLFSATMPSW 135
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K +++ LIT +AKGGK IV
Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLITVYAKGGKTIV 195
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FT+TK+DAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +L+ATDVAARGLD+
Sbjct: 196 FTRTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 255
Query: 410 PNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVE---TCT 464
PNVDL+ L F+ S + R GK+ M SSQ +K +E C
Sbjct: 256 PNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILM----FTSSQKRTVKSLERDVGCN 311
Query: 465 MTWVA 469
+++
Sbjct: 312 FEFIS 316
>gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
Length = 596
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 165/271 (60%), Positives = 202/271 (74%), Gaps = 2/271 (0%)
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTP
Sbjct: 16 RGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTP 75
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W
Sbjct: 76 GRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGW 135
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K +++ LIT +AKGGK IV
Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIV 195
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +L+ATDVAARGLD+
Sbjct: 196 FTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 255
Query: 410 PNVDLVELVVLERKEVQFL--STQISRPGKS 438
PNVDL+ L F+ S + R GK+
Sbjct: 256 PNVDLIIHYELPNDPETFVHRSGRTGRAGKA 286
>gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 597
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 165/271 (60%), Positives = 202/271 (74%), Gaps = 2/271 (0%)
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTP
Sbjct: 16 RGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTP 75
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W
Sbjct: 76 GRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGW 135
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K +++ LIT +AKGGK IV
Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIV 195
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +L+ATDVAARGLD+
Sbjct: 196 FTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 255
Query: 410 PNVDLVELVVLERKEVQFL--STQISRPGKS 438
PNVDL+ L F+ S + R GK+
Sbjct: 256 PNVDLIIHYELPNDPETFVHRSGRTGRAGKA 286
>gi|145347049|ref|XP_001417991.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578219|gb|ABO96284.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 346
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/317 (52%), Positives = 216/317 (68%), Gaps = 37/317 (11%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D+ +S VAAL +RG+ LFPIQ+AVL+PA+ G D++GRARTGTGKTLAF +P++
Sbjct: 1 MDVGNFGMSAITVAALRKRGVDTLFPIQQAVLKPALSGEDVVGRARTGTGKTLAFALPVI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
++++ + GR RNP C+VLAPTRELAKQVE E +APSL+T+CVYGGTPI Q L
Sbjct: 61 ERLLT-DGTSGRSRNPKCIVLAPTRELAKQVENEICITAPSLETVCVYGGTPIGQQEGKL 119
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGRV DL+ R +L+L E++FVVLDEADQML+VGF EDVE IL+ P++RQ
Sbjct: 120 RRGVDIVVGTPGRVQDLMNRRSLDLGEIEFVVLDEADQMLNVGFEEDVEAILQDCPESRQ 179
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP W++ +T K+LK G ++
Sbjct: 180 TFLFSATMPSWVKQITKKFLKP----------------------------------GHVV 205
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ K K I FTQTKR AD L A+ + E LHGDI+Q+QRERTL FRD RF++LI
Sbjct: 206 VDLDK--KAICFTQTKRAADELTAALGRRVASEVLHGDIAQAQRERTLQRFRDNRFSVLI 263
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARGLD+ +VDLV
Sbjct: 264 ATDVAARGLDISDVDLV 280
>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
Length = 424
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/336 (50%), Positives = 229/336 (68%), Gaps = 10/336 (2%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--R 170
ALA RGI LFP+Q V EP M GRD++ RA+TG+GKTLAF +P+++ +++ N K +
Sbjct: 3 ALAARGIYSLFPVQAQVFEPIMNGRDVVCRAKTGSGKTLAFALPVVENLLEENGKSRPRK 62
Query: 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPG 230
GR P CLVLAPTRELA QV +EF P+L YGG IS Q+R+L+ GVD VVGTPG
Sbjct: 63 GRAPRCLVLAPTRELANQVSREFESVCPNLKVDSFYGGVSISPQIRSLENGVDVVVGTPG 122
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN--RQSMMFSATMPP 288
R+IDL++R L L +++ VLDEADQML +GF +D+E IL +P+ RQ+++FSAT+P
Sbjct: 123 RIIDLLERGCLKLDNIRYAVLDEADQMLDMGFEQDMERILGAIPEGKERQTLLFSATLPK 182
Query: 289 WIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLITEH---AKG 344
W++S+ +Y NPLT+DLVG+ + KLAD I L +K S + L+ + A G
Sbjct: 183 WVKSVAKRYQNNPLTIDLVGEENTGKLADTIRLLVQQVDGAQKMSALQGLLAMYGNTAGG 242
Query: 345 GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
GK I+F TK AD + A+ + +C+ LHGDISQ+QRE+ L+ FRDG++N L+ATDVAA
Sbjct: 243 GKAIIFVNTKAKADEVNMAVNEFASCDALHGDISQAQREKALALFRDGKYNCLVATDVAA 302
Query: 405 RGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
RGLD+P+VDLV L + FL S + R GK+
Sbjct: 303 RGLDIPSVDLVAHFDLPQDNEAFLHRSGRTGRAGKT 338
>gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii]
gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii]
Length = 384
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 166/354 (46%), Positives = 236/354 (66%), Gaps = 16/354 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I+ L +S + + ALA RGI LFP+Q VLEP GRD++ RA+TG+GKTLAF +P+++
Sbjct: 16 IANLGLSPETMDALANRGIFSLFPVQAQVLEPIASGRDVVCRAKTGSGKTLAFALPVVEN 75
Query: 161 IIKFN------EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
+++ + + +GR+P C+VLAPTRELA QV +EF P+L YGG IS Q
Sbjct: 76 LLEVSGLRRPRTRPRKGRSPRCVVLAPTRELANQVSREFESVCPALKVDSFYGGVSISAQ 135
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
MR+L+ GVD VVGTPGRVIDL++R +L L V++ +LDEAD ML +GF +D+E IL +P
Sbjct: 136 MRSLERGVDVVVGTPGRVIDLMQRGSLKLDAVRYAILDEADSMLDMGFEQDMETILGAMP 195
Query: 275 ----QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYE 329
RQ+++FSAT+P W++S+ +Y +NPLT+DLVG+ + +LAD I L +
Sbjct: 196 TAAANERQTLLFSATLPKWVKSVAKRYQQNPLTIDLVGEENTGRLADTIRLLVQQVEGAQ 255
Query: 330 KPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTL 386
K S + +++ + A GGK I+F TK AD + A+ + C+ LHGDISQ+QRE+ L
Sbjct: 256 KMSALQGVLSMYGNTAGGGKAIIFVNTKAKADEVNLAVNEFAPCDALHGDISQAQREKAL 315
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
S FR+G++ L+ATDVAARGLD+PNVDLV + + FL S + R GK+
Sbjct: 316 SLFREGKYAALVATDVAARGLDIPNVDLVVHYDVPQDNEAFLHRSGRTGRAGKT 369
>gi|3775995|emb|CAA09200.1| RNA helicase [Arabidopsis thaliana]
Length = 363
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 149/185 (80%), Positives = 164/185 (88%)
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290
R+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP RQSMMFSATMP WI
Sbjct: 1 RIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWI 60
Query: 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVF 350
RSLT KYL NPLT+DLVGDSDQKLADGI++YSIA Y + SIIG L+ EH KGGKCIVF
Sbjct: 61 RSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVF 120
Query: 351 TQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
TQTKRDADRLA +AKSY CE LHGDISQ+QRERTL+ FRDG F+IL+ATDVAARGLDVP
Sbjct: 121 TQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVP 180
Query: 411 NVDLV 415
NVDLV
Sbjct: 181 NVDLV 185
>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase [Deinococcus maricopensis DSM 21211]
gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
21211]
Length = 604
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 164/311 (52%), Positives = 210/311 (67%), Gaps = 6/311 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ + A LA RGI + PIQ L MQGRD+IGRARTGTGKTLAF IP++DK+
Sbjct: 7 IAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVIDKLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E RGR P L+LAPTRELAKQV +EF +SAP L T+ VYGG Q +AL GVD +
Sbjct: 67 E---RGRLPRALILAPTRELAKQVAEEFKKSAPELLTLTVYGGAAYGPQEKALYGGVDVI 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGRVID I+R L L VQF +LDEAD+MLSVGFA+ +E IL P+ RQ+M+FSAT
Sbjct: 124 VGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
+P + + NKYLK+PL VDLVG+S + A + + + ++ +T +
Sbjct: 184 LPAGVTRIGNKYLKDPLVVDLVGESRMQAAQTVQHLKVKVGRT-RTRVLADFLTIY-NPE 241
Query: 346 KCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
+ IVFT+TKR+ D LA + + E LHGD++QSQRER L +FR GR +L+ATDVAA
Sbjct: 242 RAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVRVLVATDVAA 301
Query: 405 RGLDVPNVDLV 415
RGLD+P +DLV
Sbjct: 302 RGLDIPEIDLV 312
>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
Length = 737
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/331 (48%), Positives = 223/331 (67%), Gaps = 11/331 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + + +S+ + + L + I LFPIQ LEPAM+G D++GRARTG GKTLAF +P++
Sbjct: 104 LGLDRFKLSEQVKSMLRSQNIESLFPIQAMTLEPAMEGLDVVGRARTGCGKTLAFTVPVV 163
Query: 159 DKIIKFNEK-----HGRGRNPLCLVLAPTRELAKQVEKEFHES--APSLDTICVYGGTPI 211
++II + G GR P+C+VLAPTRELAKQV++ F + A +L T+CVYGGTP
Sbjct: 164 ERIIAEQKSGSGIGRGAGRLPVCIVLAPTRELAKQVQEVFANTGKAANLYTMCVYGGTPY 223
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q +AL GVD VVGTPGRV DL++R L LS ++F VLDE DQML++GF EDVE IL+
Sbjct: 224 DGQEQALSRGVDVVVGTPGRVKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILK 283
Query: 272 RLPQNR---QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSM 327
+ NR Q+++FSAT+P W++ LT ++L+ +DLVGD + A + + S
Sbjct: 284 QGENNRDQIQTLLFSATLPKWVQGLTQRFLRPGHKFLDLVGDDRMQAAVTVKHLMLPCSY 343
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
++ ++ LIT + GG+ I+FT +K++A L+ + S + LHGD++QS RE+TL
Sbjct: 344 PQRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGDSLGAQALHGDLAQSMREQTLD 403
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLVELV 418
FR GRF ILIATDVAARGLDV ++LV +V
Sbjct: 404 GFRKGRFAILIATDVAARGLDVTGIELVLMV 434
>gi|386857046|ref|YP_006261223.1| DEAD/DEAH box helicase [Deinococcus gobiensis I-0]
gi|380000575|gb|AFD25765.1| DEAD/DEAH box helicase-like protein [Deinococcus gobiensis I-0]
Length = 599
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 160/311 (51%), Positives = 212/311 (68%), Gaps = 6/311 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I ++ A LA RGI++ PIQ L +QGRD+IGRARTGTGKTLAF +PI+ +
Sbjct: 7 IVPELAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQNLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E R R P +V+APTRELAKQV EF +S +L T+ VYGG + Q AL GVD V
Sbjct: 67 E---RSRLPRAIVVAPTRELAKQVADEFSKSGANLTTVTVYGGASYAPQENALRRGVDVV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L+LS VQ+ VLDEAD+MLSVGFA+ +E ILE+ P+ RQ+M+FSAT
Sbjct: 124 VGTPGRLIDHLERGNLDLSAVQYAVLDEADEMLSVGFADAIETILEKTPEGRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
+ I L+ KYL++PLTVD+VG+ + A + + + ++ L+T +
Sbjct: 184 LNGDINRLSRKYLRDPLTVDMVGEGKSQAAQTVEHLKVRVGR-SRTRVLADLLTVYNP-E 241
Query: 346 KCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K IVFT+TKR+AD LA+ + + E LHGD++Q+QRER L AFR GR +L+ATDVAA
Sbjct: 242 KAIVFTRTKREADELANELIHRGIESEALHGDLAQTQRERALGAFRSGRVGVLVATDVAA 301
Query: 405 RGLDVPNVDLV 415
RGLD+P VDLV
Sbjct: 302 RGLDIPEVDLV 312
>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase [Deinococcus geothermalis DSM 11300]
gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
11300]
Length = 591
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/313 (50%), Positives = 210/313 (67%), Gaps = 5/313 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ ++ A LA RGI++ PIQ L + G+D+IGRARTGTGKTLAF +PI+ + +
Sbjct: 7 IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQNLTAPD 66
Query: 166 EKHGR--GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ R GR P +V+APTRELAKQV +EF +S P L T+ VYGG Q AL GVD
Sbjct: 67 GRGSRERGRLPRAIVIAPTRELAKQVAEEFSKSGPQLSTVTVYGGAAYGPQENALRRGVD 126
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR+ID ++R L+LS +Q+ VLDEAD+MLSVGFA+ +E IL++ P RQ+M+FS
Sbjct: 127 VVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAARQTMLFS 186
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
AT+ I L KYL+ P+ VDLVG+ + A + + + ++ L+T +
Sbjct: 187 ATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRT-RTRVLADLLTVYNP 245
Query: 344 GGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
K IVFT+TKR+AD LA+ + + E LHGD++QSQRER L AFR GR +L+ATDV
Sbjct: 246 -EKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLVATDV 304
Query: 403 AARGLDVPNVDLV 415
AARGLD+P VDLV
Sbjct: 305 AARGLDIPEVDLV 317
>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
VCD115]
Length = 602
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 210/311 (67%), Gaps = 6/311 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ ++ A LA RGI++ PIQ L + GRDMIGRARTGTGKTLAF +PI+ K+
Sbjct: 7 IAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E R R P +V+APTRELAKQV +EF +S L T+ VYGG + Q AL GVD V
Sbjct: 67 E---RARPPRAIVVAPTRELAKQVAEEFSKSGVGLTTVTVYGGASYAPQENALRRGVDVV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L+LS V+F VLDEAD+MLSVGFA+ +E IL++ P +RQ+M+FSAT
Sbjct: 124 VGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
+ I L+ YL+ P+ VD+VG+ + A + + + ++ L+T +
Sbjct: 184 LNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVG-RSRTRVLADLLTIYNP-E 241
Query: 346 KCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K IVFT+TKR+AD LA+ + + E LHGD++QSQRER L AFR GR +L+ATDVAA
Sbjct: 242 KAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVATDVAA 301
Query: 405 RGLDVPNVDLV 415
RGLD+P VDLV
Sbjct: 302 RGLDIPEVDLV 312
>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
Length = 727
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 157/331 (47%), Positives = 220/331 (66%), Gaps = 11/331 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + + +S+ + + L + I LFPIQ LEP + G D++GRARTG GKTLAF +PI+
Sbjct: 102 LGLDRFPLSEQVKSMLRSQNIESLFPIQAMTLEPGLAGVDVVGRARTGCGKTLAFVLPIV 161
Query: 159 DKIIKFNEK---HGR--GRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPI 211
++I+ K GR GR P+C+VLAPTRELAKQV++ F A +L T+CVYGGTP
Sbjct: 162 ERILAEQRKGVAAGRVAGRLPICIVLAPTRELAKQVQEVFANVGKAANLYTLCVYGGTPY 221
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL- 270
Q AL GVD VVGTPGR+ DL++R L LS ++F VLDE DQML++GF EDVE IL
Sbjct: 222 DGQETALSKGVDVVVGTPGRIKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILK 281
Query: 271 --ERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSM 327
E+ P + Q+++FSAT+P W++ LT ++L+ +DLVGD + A + + S
Sbjct: 282 AGEQQPDSIQTLLFSATLPKWVKGLTQRFLRPGHRFMDLVGDDKMQAAVTVRHLMLPCSY 341
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
++ ++ LIT + GG+ I+FT +K++A L+ + S + LHGD++QS RE+TL
Sbjct: 342 PQRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGDSLGAQALHGDLAQSMREQTLD 401
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLVELV 418
FR GRF +LIATDVAARGLDV ++LV +V
Sbjct: 402 GFRKGRFPVLIATDVAARGLDVSGIELVLMV 432
>gi|428178088|gb|EKX46965.1| hypothetical protein GUITHDRAFT_159596 [Guillardia theta CCMP2712]
Length = 676
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 156/324 (48%), Positives = 215/324 (66%), Gaps = 17/324 (5%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
DE D+ IS + LA+RGI+ LFP+Q + +GRD++ RARTGTGKTL F +
Sbjct: 46 DEPGDLRNFPISDQTLDCLAQRGITSLFPVQYSTFNEIFEGRDVLARARTGTGKTLGFSL 105
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
PIL E+ RG P C++L+PTRELA+QVE+E + T+CVYGG P Q
Sbjct: 106 PIL-------ERRSRGSAPACIILSPTRELAQQVEREVQ-----VKTLCVYGGVPYHKQE 153
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+ L GVD VVGTPGR+IDL+ AL+LSE++++VLDEAD+ML+ GFA+DVE ++ +PQ
Sbjct: 154 KELQMGVDIVVGTPGRLIDLMNNGALDLSEIRYLVLDEADEMLNRGFADDVETLMGGMPQ 213
Query: 276 NR---QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
Q+++FSAT+P W+R L L NP VDLVG+S K+A+G+S ++A++ ++ +
Sbjct: 214 GADRPQTLLFSATVPDWVRKLARTSLVNPHEVDLVGESKLKVAEGVSHVAVASAARQRST 273
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY-NCEPLHGDISQSQRERTLSAFRD 391
++ LIT + K IVF TKRDAD L + E LHGDI Q+ RE+ L+ FR
Sbjct: 274 LLADLITIY-KTQHAIVFVNTKRDADDLVAELGLIIKGTEALHGDIPQNVREKILNGFRT 332
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
GR +LIATDVAARGLD+ ++DLV
Sbjct: 333 GRIPVLIATDVAARGLDIDHIDLV 356
>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
Length = 612
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 155/311 (49%), Positives = 209/311 (67%), Gaps = 6/311 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ + A LA RGI++ PIQ L +QGRD+IGRARTGTGKTLAF +PI+ +
Sbjct: 7 IAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQGLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E R R P +V+APTRELA+QV EF ++ L + VYGG Q AL GVD V
Sbjct: 67 E---RSRLPRAIVVAPTRELARQVAAEFEQTGRELTVLTVYGGAAYGPQETALRRGVDVV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L+L EV++ VLDEAD+MLSVGFA+ +E IL+ P+ RQ+++FSAT
Sbjct: 124 VGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPEGRQTLLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
+ P IR L+NKYL +PL VD+VG+ + A + + + ++ L+T +
Sbjct: 184 LTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRVGR-SRTRVLADLLTVYNP-E 241
Query: 346 KCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K IVFT+TKR+ D LA + + + E LHGD++Q+QRER L +FR GR +IL+ATDVAA
Sbjct: 242 KAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTSILVATDVAA 301
Query: 405 RGLDVPNVDLV 415
RGLD+P VDLV
Sbjct: 302 RGLDIPEVDLV 312
>gi|428169310|gb|EKX38245.1| hypothetical protein GUITHDRAFT_158516 [Guillardia theta CCMP2712]
Length = 397
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 142/317 (44%), Positives = 214/317 (67%), Gaps = 1/317 (0%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+++ ++ +S+ + A L GI+ LFP+Q + M G+D++ R+RTG+GKT+AF +P++
Sbjct: 1 MNLEEVPLSKKVKAKLKECGITSLFPVQVKTFQTLMDGKDVVVRSRTGSGKTIAFALPVI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+KI+ N+ GR P CLV+APTRELA Q+++EF P + + CVYGG I Q+ AL
Sbjct: 61 EKILA-NKTRKHGRLPSCLVIAPTRELAIQIDREFTRIQPEVASTCVYGGVSIGMQVSAL 119
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR+ID + L++S V+ +LDEAD+ML +GF +DVE I+E LP ++Q
Sbjct: 120 RKGVDVVVGTPGRLIDHLVNGTLDVSAVETFILDEADEMLKMGFQDDVERIIEYLPPSKQ 179
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ ++SATMP W++ L KY K+ + D+VG+ + + I +IA + I +++
Sbjct: 180 TNLWSATMPTWVKDLAQKYCKDVVFFDMVGNDSTRTSITIEHIAIACGYDSHANAISRVV 239
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
++ KGG+ +VF +TK + DRLA+ + +HGD+SQ QRERTL FR G+F IL+
Sbjct: 240 KKYGKGGRVLVFCRTKLEVDRLANHPSLKTTARVIHGDVSQLQRERTLQDFRSGKFLILV 299
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARG+DVP V+LV
Sbjct: 300 ATDVAARGIDVPEVELV 316
>gi|440791138|gb|ELR12392.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 723
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 225/351 (64%), Gaps = 13/351 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS V L RG LF IQ + G+D+IGRARTG+GKTL+F +P+++K
Sbjct: 118 FSDFRISPTTVKLLQDRGFKCLFAIQAQTYDHIYDGKDIIGRARTGSGKTLSFVLPVVEK 177
Query: 161 IIKFNEKHGR-----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
I F + G+ GR P + L+PTRELA+Q+ KEF APSL +CVYGG P + Q
Sbjct: 178 I--FIDMAGKPRSTYGRPPKVVCLSPTRELARQIAKEFDLVAPSLKAVCVYGGAPYTPQE 235
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GVD V+GTPGRVID++ RN L L++V++V+LDEAD+ML++GFA+ V+ IL P+
Sbjct: 236 NALKRGVDIVIGTPGRVIDMLDRNCLKLTDVKYVILDEADEMLNIGFADAVDKILASAPK 295
Query: 276 --NRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
RQ+++FSAT+PPW++ + K+++ N +TVDLVG+S K A + +I +
Sbjct: 296 PDERQTLLFSATIPPWVQGIAQKHMRPSNLITVDLVGNSKLKAALTVRHLAICCPPPVRI 355
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
S + ++ +A G+ IVF TK + + LA + S C+ LHGDI+Q QRE TL FR+
Sbjct: 356 STMADVVKVYAGTGRTIVFANTKAEVNELAMKSSISNVCQVLHGDIAQKQREITLQGFRE 415
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRV 440
GRF+ L+ATDVAARGLD+ +VDLV + + ++ S + R GKS +
Sbjct: 416 GRFSCLVATDVAARGLDIDDVDLVIQTQAPKDKETYIHRSGRTGRAGKSGI 466
>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 694
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/323 (45%), Positives = 207/323 (64%), Gaps = 9/323 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + DIS+ L RGI+ LFPIQ E +G+D+IGRARTG GKTLAF +P+++K
Sbjct: 149 VDEFDISETTKGHLRNRGITTLFPIQAQTFEHIRRGKDLIGRARTGMGKTLAFAVPVIEK 208
Query: 161 IIKFNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + GR P LV+APTRELAKQV +F +APSL T C+YGG P Q AL
Sbjct: 209 LLMAGAGSLKPGRKPRVLVMAPTRELAKQVAADFELTAPSLKTTCIYGGAPYRPQEDALR 268
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----PQ 275
+GVD VVGTPGR++D + R L LS+ +F++LDEADQML +GF E++E + E Q
Sbjct: 269 WGVDVVVGTPGRLLDHVGRGTLQLSDAEFIILDEADQMLDMGFKEEMEKVFEACGEEGEQ 328
Query: 276 NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
RQ ++FSATMPPW+ + +Y+K + + +DLV + K + + I + S I
Sbjct: 329 GRQMLLFSATMPPWVDKVVKEYMKEDRVFIDLVKEGTVKASKDVEHIGIPCHWTSRSSTI 388
Query: 335 GQLITEHAKGG--KCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
+++ + GG + IVF TKRD + L +Y+C+ LHGDI+Q+ RE TL+ F+ G
Sbjct: 389 NDIVSVYGAGGNKRTIVFCTTKRDCNELCMDPKMTYDCQALHGDITQANRESTLAGFKKG 448
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
F +L+ATDVAARGLD+ VDLV
Sbjct: 449 SFKVLVATDVAARGLDMI-VDLV 470
>gi|387191793|gb|AFJ68623.1| hypothetical protein NGATSA_3007300, partial [Nannochloropsis
gaditana CCMP526]
Length = 800
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 224/350 (64%), Gaps = 19/350 (5%)
Query: 84 VDDY------VAYDDSSKDEG--LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ 135
VDD+ + +D ++ DEG + I + +S +V +LA I+ PIQ+ +P +
Sbjct: 157 VDDFKSFGEEMTFDTTAHDEGGEMSIDEKRVSPGVVESLAGANITHFTPIQRETFDPLFE 216
Query: 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEK 191
GRDMIGR+RTGTGKTLAFG+PIL+ + K E K+ RGR+P ++LAPTRELAKQ ++
Sbjct: 217 GRDMIGRSRTGTGKTLAFGLPILEAVAKNMEAAGTKNARGRSPSVIILAPTRELAKQCDE 276
Query: 192 EFHESAPSLDTI--CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
+ L +YGG P Q+R L+ G D +VGTPGR++D + R L+L++++ +
Sbjct: 277 QLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLDRGTLSLNDIKHI 336
Query: 250 VLDEADQMLSVGFAEDVEVILERLPQNR-QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+LDEAD+ML +GFAED+E I + Q ++FSAT P W++ + KYLKNP+ VD VG
Sbjct: 337 ILDEADEMLKMGFAEDIEKIFSYFDVTQAQMLLFSATTPSWVQVIARKYLKNPINVDAVG 396
Query: 309 DSDQKLADGISLYSIAT--SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA- 365
+ + A I ++ S + +++ +I H+ GG+ +VFTQTK +AD L+ +
Sbjct: 397 GGN-RAATTIRHVAVKVPDSYSARKNVLEDVIAAHSCGGRVMVFTQTKSEADELSTSSPY 455
Query: 366 KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+ N LHGDI+Q QRE TL FRDG F +LIATDVAARG+D+P VDLV
Sbjct: 456 AAENTRVLHGDITQRQRELTLRQFRDGFFKVLIATDVAARGIDIPEVDLV 505
>gi|222626093|gb|EEE60225.1| hypothetical protein OsJ_13207 [Oryza sativa Japonica Group]
Length = 697
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 144/257 (56%), Positives = 187/257 (72%), Gaps = 16/257 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQ--------------KAVLEPAMQGRDMIGRAR 144
L I++L + + +V+ L +RGI+ LFPIQ +AVL PA+ GRD+I RA+
Sbjct: 104 LAIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLIARAK 163
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT 202
TGTGKTLAFGIP++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T
Sbjct: 164 TGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLST 223
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+CVYGG + Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF
Sbjct: 224 VCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGF 283
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322
EDVE IL++LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+
Sbjct: 284 EEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYA 343
Query: 323 IATSMYEKPSIIGQLIT 339
I + K +++ LIT
Sbjct: 344 IPLTSTSKRTVLSDLIT 360
>gi|390333037|ref|XP_786504.3| PREDICTED: nucleolar RNA helicase 2-like [Strongylocentrotus
purpuratus]
Length = 751
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/329 (45%), Positives = 205/329 (62%), Gaps = 16/329 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S I + L +G+ LFPIQ +P G D+I +ARTGTGKTL+F +P+++K
Sbjct: 118 FSNFGIRPKTIEKLHAKGVKYLFPIQAQTFKPIDDGFDVIAQARTGTGKTLSFVLPLVEK 177
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+F +K GR P+ L LAPTRELAKQ+ + F P L T C+YGGT Q A+
Sbjct: 178 WQQFPQKSGR--QPIILALAPTRELAKQISEYFEAIGPHLSTTCIYGGTSYWPQESAIRR 235
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL---------- 270
G+D VVGTPGR++D I++N L+LS+++ VVLDE D+ML +GFAE VE IL
Sbjct: 236 GLDVVVGTPGRILDYIRKNTLDLSKLKHVVLDEVDRMLDMGFAESVEEILGAAYKTGQPG 295
Query: 271 --ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSM 327
E P N Q+++FSAT+PPW+ KY++ L VDLVG K A + +I S
Sbjct: 296 DGEEAPNNPQTLLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTATTVQHLAINCSY 355
Query: 328 YEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTL 386
+++P +I +I + G+C+VF +TKRDA+ LA + + +HGDI Q+QRE TL
Sbjct: 356 FDRPQVISDVIKVYGGLDGRCMVFCETKRDANELAMSSDVKQETQVMHGDIPQTQREVTL 415
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLV 415
FR+G+F L+ TDVAARGLD+P VDLV
Sbjct: 416 KGFREGKFQCLVTTDVAARGLDIPEVDLV 444
>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
dendrobatidis JAM81]
Length = 764
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 152/357 (42%), Positives = 229/357 (64%), Gaps = 28/357 (7%)
Query: 84 VDDYVAYDDSSKDEGLDI------SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
+DDY + S+K E DI S ++S + +L RGI +LFPIQ A +P ++G
Sbjct: 123 IDDYKS---STKKEESDIPVNLRLSSHNLSLSTIESLKARGIVQLFPIQAASFDPIIKGM 179
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKH-----GRGRNPLCLVLAPTRELAKQVEKE 192
D++GRARTGTGKTLAF +P+++ + + E + RGR P L++APTRELA QV +E
Sbjct: 180 DLLGRARTGTGKTLAFSLPMIEVLKRERESNRHLFSQRGRAPRVLIMAPTRELAMQVHRE 239
Query: 193 FHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251
F S+ L + C YGG+P Q A+ G+D +VGTPGR+ID I+R L L++++F+ L
Sbjct: 240 FDSISSGELKSTCAYGGSPYDSQCNAMRDGIDVIVGTPGRLIDHIERGTLKLNQLRFICL 299
Query: 252 DEADQMLSVGFAEDVEVILERLPQNR---------QSMMFSATMPPWIRSLTNKYLK-NP 301
DEADQML +GFAE +E IL+++ + + Q ++FSATMP WI+ +KY+K N
Sbjct: 300 DEADQMLDIGFAESMEKILQQVQEQKSKLTDAPDHQVLLFSATMPVWIKQAVSKYMKPNK 359
Query: 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG--GKCIVFTQTKRDADR 359
+T+DL+G QK + + Y+IA+ + +++G ++ + +G G+ I+F +TK +A+
Sbjct: 360 VTLDLIGTDKQKTSATVKHYAIASHWQNRSALLGDIVAIYGRGGAGRTIIFVETKGEANE 419
Query: 360 LA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
LA + + + LHGDI Q QRE T+ FR+G+F LI T+V ARG+D+P VDLV
Sbjct: 420 LAMNDKLVTMGTQVLHGDIQQKQREVTMQGFREGKFTSLITTNVCARGVDIPEVDLV 476
>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
[Saccoglossus kowalevskii]
Length = 700
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 144/323 (44%), Positives = 212/323 (65%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +S +A+L R I+ LFPIQ + G D+I +ARTGTGKTLAF +P+++K
Sbjct: 120 FSNFRLSPQTIASLKARSITHLFPIQAKTFDYVYDGHDVIAQARTGTGKTLAFALPLVEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ N + GR P LV+APTRELAKQV ++F S P L T+CVYGGT Q A+
Sbjct: 180 LK--NTEFKAGRPPQVLVMAPTRELAKQVSEDFQASNPRLSTLCVYGGTAYWPQESAIRR 237
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL------ERLP 274
GVD +VGTPGR++D +++N LNLS+++ V+LDE D+ML +GFA+ VE IL +
Sbjct: 238 GVDVLVGTPGRILDYVQKNTLNLSQLKHVILDEVDRMLDMGFADTVEEILSASYKMDNPG 297
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT+P W+ KY+K+ + VDL+G K A + +I ++ +
Sbjct: 298 ENPQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKTATTVEHLAIRCHYRQRAAT 357
Query: 334 IGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
I ++ ++ K G+C++FT+TK+DA+ + + + + + LHGDI+Q+QRE TL FRDG
Sbjct: 358 ISDVVQVYSGKHGRCMIFTETKKDANEMGLSSSIRQDVQVLHGDIAQNQREITLKGFRDG 417
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+F L+ATDVAARGLD+P VDL+
Sbjct: 418 KFRCLVATDVAARGLDIPEVDLI 440
>gi|429220700|ref|YP_007182344.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131563|gb|AFZ68578.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 570
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 205/311 (65%), Gaps = 6/311 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ + ALA RGIS PIQ L + GRD+IGRARTGTGKTLAF +PI ++
Sbjct: 7 IAPHLAEALAARGISAPSPIQIESLPHTLAGRDLIGRARTGTGKTLAFVLPITTRLEASR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
+ GR P ++LAPTRELAKQV E +SA L T+ VYGG Q +AL GVD V
Sbjct: 67 QS---GRGPRAIILAPTRELAKQVAAEAEQSARHLTTVTVYGGAAYGPQEKALMRGVDIV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L L +VQ VLDEAD+MLSVGFA+ +E IL P++RQ+M+FSAT
Sbjct: 124 VGTPGRIIDHLERGNLRLDDVQIAVLDEADEMLSVGFADAIEQILRSAPKDRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
+P + L +Y ++P+ VDLVG+ + + ++ +I + ++ L+T +
Sbjct: 184 LPSGVERLARQYQRDPVLVDLVGERASQASQTVTHLAIKVGRV-RTRVLADLLTVY-NPE 241
Query: 346 KCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
+ IVFT+TKR+AD L+ + + E LHGD++QSQRER L AFR GR +L+ATDVAA
Sbjct: 242 RAIVFTRTKREADELSLELIHRGIEAEALHGDLAQSQRERALGAFRAGRVRVLVATDVAA 301
Query: 405 RGLDVPNVDLV 415
RGLD+P VDLV
Sbjct: 302 RGLDIPEVDLV 312
>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/324 (46%), Positives = 207/324 (63%), Gaps = 8/324 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +S +I + + L +GI LFPIQ E G DM+GRARTG GKTLAF +P+L
Sbjct: 110 MAVSNFNIGKALRDKLKAKGIESLFPIQAQTFEAVFDGNDMVGRARTGQGKTLAFVLPVL 169
Query: 159 DKIIK--FNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
+ + + + + RGR +VLAPTRELAKQV +F + SA L T+CVYGG P Q
Sbjct: 170 ESLSQSGYTKNLQRGRAAAVIVLAPTRELAKQVHADFETYGSAVGLSTVCVYGGAPYGPQ 229
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL- 273
AL GVD VVGTPGR+ D +R LNL ++F +LDEAD+ML++GF +DVE IL +
Sbjct: 230 ENALRRGVDIVVGTPGRIKDHFERGTLNLKSLKFRILDEADEMLNMGFVDDVETILGGVD 289
Query: 274 -PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P Q+++FSAT+P W++ + K+LK TVDLVGD K ++ + + +
Sbjct: 290 DPSKVQTLLFSATLPTWVQQIARKFLKATRKTVDLVGDEKMKASNSVRHLLLPGHYSMRT 349
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
++ +I+ + GG+ IVFT+TK DA LA A+ KS LHGDI Q+QRE TL FR
Sbjct: 350 QLVQDVISCYGSGGRIIVFTETKNDASELAGAL-KSGTARALHGDIPQNQREVTLQGFRT 408
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F++L+ATDVAARGLD+ +V LV
Sbjct: 409 GKFSVLVATDVAARGLDINDVQLV 432
>gi|348685693|gb|EGZ25508.1| hypothetical protein PHYSODRAFT_326516 [Phytophthora sojae]
Length = 962
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 205/328 (62%), Gaps = 10/328 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + DI + V L RGI LFPIQ + + G+D++GRARTG GKTLAF +P
Sbjct: 98 ENPPLESFDICAETVKNLKARGIHTLFPIQAMTFDKILAGKDLMGRARTGMGKTLAFALP 157
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++ ++K RGR P + +APTRELAKQV EF +S PSL T+C+YGG Q
Sbjct: 158 VIELLLKDKRPRSRGRAPRVVCMAPTRELAKQVATEFEQSGPSLSTVCIYGGASYQSQNN 217
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A GVD +VGT GRVID I R L L +F++LDEAD ML +GF EDV+ + + Q
Sbjct: 218 AFRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFAAMEQT 277
Query: 277 -------RQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGISLYSIATSMY 328
RQ+++FSAT+P W+ + +KY+ K+ V+LV DSD + + + +I
Sbjct: 278 KNESSGKRQTLLFSATIPKWVTDVADKYMAKDREYVNLVKDSDDQASTDVQHIAIPCHWQ 337
Query: 329 EKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
+P+++ L+ +A K + I+F +TK+D + LA +C+ LHGDI+Q QRE T+
Sbjct: 338 GRPTLLANLLGVYAKKDSRTIIFAETKKDCNELAVHPEIKTDCQVLHGDIAQEQRETTMK 397
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
AFR+GR +LIATDVAARGLD+ NVDLV
Sbjct: 398 AFREGRLRLLIATDVAARGLDM-NVDLV 424
>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 923
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 150/340 (44%), Positives = 214/340 (62%), Gaps = 9/340 (2%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
D V+ + ++ + + D+ VAAL RGI K P+Q + + GRD+IG++R
Sbjct: 242 DQMVSLVEVGEEGACPVEEKDVDPKTVAALKARGIEKFTPVQAITYDHILSGRDIIGKSR 301
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHG-----RGRNPLCLVLAPTRELAKQVEKEFHE--SA 197
TGTGKT+AFG+P++ + +F E H RGR+P LV+ PTRELA+QV E S
Sbjct: 302 TGTGKTIAFGLPVIQHLGRFAEDHQQRTYQRGRSPRFLVVCPTRELARQVYGELETLGST 361
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
L +GG QMR+L G+D +V TPGR++D ++R AL+LS+V+ VLDEAD+M
Sbjct: 362 FGLKADVFHGGAAYGPQMRSLSDGLDILVATPGRIMDHLQRGALDLSDVRHAVLDEADEM 421
Query: 258 LSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
L++GFA+D+E I + + Q ++FSAT+P W+R++ NKY NPLTVD VG KLA
Sbjct: 422 LNMGFADDIETIFSYVDVKECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKHVNKLAT 481
Query: 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHG 375
+ SI S + S++ +IT + KG IVFT +K + D LA K+ + LHG
Sbjct: 482 TVKHLSIEVSSRHRSSMLEDIITYYGKGSHAIVFTNSKAECDELADGQTFKTLTSQVLHG 541
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
DISQ QR++T+ AFR F +L+ATDVAARG+DV ++DLV
Sbjct: 542 DISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLV 581
>gi|118092587|ref|XP_001232052.1| PREDICTED: nucleolar RNA helicase 2 [Gallus gallus]
Length = 713
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/322 (44%), Positives = 206/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFP+Q P G+D+I +ARTGTGKT +F IP+++K
Sbjct: 135 FSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEK 194
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR+P LVLAPTRELA QV K+F + L C YGGTP + Q+ +
Sbjct: 195 LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKLTVACFYGGTPYNGQIDLIRS 254
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 255 GIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSED 314
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 315 NPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAIECHWSQRAAVI 374
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK+DA+ LA + +C+ LHGDI Q QRE TL FR+G
Sbjct: 375 GDVIQVYSGSYGRTIVFCETKKDANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGA 434
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 435 FKVLVATNVAARGLDIPEVDLV 456
>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
gallopavo]
Length = 1461
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/322 (44%), Positives = 206/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ V L RG++ LFP+Q P G+D+I +A+TGTGKT +F IP+++K
Sbjct: 872 FSNFPISKGTVQLLQARGVTYLFPVQVKTFHPVYSGKDVIAQAQTGTGKTFSFAIPLIEK 931
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR+P LVLAPTRELA QV K+F + L C YGGTP + Q+ +
Sbjct: 932 LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKLTVACFYGGTPYNGQIDLIRS 991
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 992 GIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSED 1051
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 1052 NPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRRTQKAATTVEHLAIECHWSQRAAVI 1111
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK+DA+ LA + +C+ LHGDI Q QRE TL FR+G
Sbjct: 1112 GDVIQVYSGSHGRTIVFCETKKDANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGA 1171
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 1172 FKVLVATNVAARGLDIPEVDLV 1193
>gi|449016019|dbj|BAM79421.1| nucleolar RNA helicase II/Gu [Cyanidioschyzon merolae strain 10D]
Length = 748
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 158/408 (38%), Positives = 246/408 (60%), Gaps = 27/408 (6%)
Query: 51 IKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYD-----DSSKDEGLDISKLD 105
+ RF +R H S L + S+ + +S D V + SK + +
Sbjct: 52 VACRFGGASRR-HQCS--LKMQLSLPSEELESTKQDGVVIEAENATSESKHRDWSLERFP 108
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ AAL ++GI++L IQ GRD+IGR+ TGTGKT AFG+P+++++++
Sbjct: 109 LSEATAAALRKKGITELTEIQAITFNDMRSGRDVIGRSHTGTGKTFAFGVPLVERMVEAR 168
Query: 166 EKHGR-----GRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQMRAL 218
+G GR+P LVL PTRELAKQV ++ L C YGG + Q AL
Sbjct: 169 VSNGSRRGAPGRSPCALVLTPTRELAKQVTEQLRLIGQPHGLAVDCFYGGASYTQQEEAL 228
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QN 276
G D +VGTPGR++D + R LNLS ++ VLDEAD+MLS+GFAEDVE I +++P +
Sbjct: 229 RRGFDVLVGTPGRILDHLDRGTLNLSNIRIAVLDEADEMLSLGFAEDVERIFQKMPPKEE 288
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT--SMYEKPSII 334
RQ+++FSAT+PPW++ + ++ + P+ D+VG ++ + A + ++ + + + +++
Sbjct: 289 RQTVLFSATIPPWVQKIAAQHQRAPVVHDVVGRTETRAAKNVRHVAVRVPDADFARFAML 348
Query: 335 GQLITEHAKGG--KCIVFTQTKRDADRLA--HAMAKSYNCEPLHGDISQSQRERTLSAFR 390
++ HA+ G +CIVFT TKR+AD +A ++ +S + LHGD+SQ QRE TL FR
Sbjct: 349 EDIVFAHAETGNQRCIVFTDTKREADEIAMTASIFRSSVAQVLHGDVSQRQRELTLQQFR 408
Query: 391 DGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
DGRF+IL+ATDVAARGLD+ VD V+++ + + + T I R G++
Sbjct: 409 DGRFSILVATDVAARGLDIHEVD----VIVQMRPPRDVDTYIHRAGRT 452
>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
Length = 517
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 155/344 (45%), Positives = 217/344 (63%), Gaps = 13/344 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L + ++ AL RG + L P+Q A L A++GRD+I +ARTGTGKTLAF +PI
Sbjct: 1 MQFNELSLKPEVQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ +GR P LVLAPTRELA QV E +AP L+ + VYGGT Q +AL
Sbjct: 61 ERL---EPARAKGRAPRALVLAPTRELALQVAGELDWAAPHLEVLTVYGGTGYGQQAQAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D ++R L+L+ V+ VVLDEAD+MLS+GF EDVE +L RQ
Sbjct: 118 RRGCDVVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSARQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP W R L ++LK+P +LV D + +I + +++ ++
Sbjct: 178 TLVFSATMPSWARRLAERHLKDPFVANLVKDEAVTYRE----LAIEAPTATRIAVLSDVL 233
Query: 339 TEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
HA G G+ IVFT+TK + D LA A+A + + E +HGD+SQ+ RER ++ FR G +
Sbjct: 234 --HAYGAGRAIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRV 291
Query: 397 LIATDVAARGLDVPNVDLVELVVL-ERKEV-QFLSTQISRPGKS 438
L+ATDVAARGLDVP V+LV L ER EV Q S + R G++
Sbjct: 292 LVATDVAARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAGRT 335
>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
Length = 626
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/344 (44%), Positives = 212/344 (61%), Gaps = 10/344 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ IS + L +GI LF IQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 45 LENFRISDAVKGMLREKGIKALFQIQAQSFDIVLDGDDLVGRARTGQGKTLAFVLPIIES 104
Query: 161 IIKFNE-KHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRA 217
+ K + K G GR P LVLAPTRELAKQV +F + A L TICVYGG+ Q A
Sbjct: 105 LRKSSSGKKGYGRAPTVLVLAPTRELAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNA 164
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ GVD VVGTPGR+ D + R LNL ++F VLDEAD+ML++GF E VE IL +
Sbjct: 165 MRRGVDIVVGTPGRIKDFLDRGDLNLKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTS 224
Query: 278 --QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
Q+++FSATMP W++ + ++LK N TVDLVGD K ++ + + + + +I
Sbjct: 225 SVQTLLFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCAYSARSQMI 284
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+I + GG+ IVFT+TK DA LA ++ + PLHGDI Q+QRE TL+ FR +F
Sbjct: 285 ADVIKVYGSGGRVIVFTETKNDASELAGSLGTNV-ARPLHGDIPQAQREHTLAGFRSAKF 343
Query: 395 NILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+L+ATDVAARGLD+ +V L+ K+V+ T I R G++
Sbjct: 344 LVLVATDVAARGLDINDVQLIIQQCEPPKDVE---TYIHRSGRT 384
>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
Length = 663
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/344 (44%), Positives = 212/344 (61%), Gaps = 10/344 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ IS + L +GI LF IQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 82 LENFRISDAVKGMLREKGIKALFQIQAQSFDIVLDGDDLVGRARTGQGKTLAFVLPIIES 141
Query: 161 IIKFNE-KHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRA 217
+ K + K G GR P LVLAPTRELAKQV +F + A L TICVYGG+ Q A
Sbjct: 142 LRKSSSGKKGYGRAPTVLVLAPTRELAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNA 201
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ GVD VVGTPGR+ D + R LNL ++F VLDEAD+ML++GF E VE IL +
Sbjct: 202 MRRGVDIVVGTPGRIKDFLDRGDLNLKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTS 261
Query: 278 --QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
Q+++FSATMP W++ + ++LK N TVDLVGD K ++ + + + + +I
Sbjct: 262 SVQTLLFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCAYSARSQMI 321
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+I + GG+ IVFT+TK DA LA ++ + PLHGDI Q+QRE TL+ FR +F
Sbjct: 322 ADVIKVYGSGGRVIVFTETKNDASELAGSLGTNV-ARPLHGDIPQAQREHTLAGFRSAKF 380
Query: 395 NILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+L+ATDVAARGLD+ +V L+ K+V+ T I R G++
Sbjct: 381 LVLVATDVAARGLDINDVQLIIQQCEPPKDVE---TYIHRSGRT 421
>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 684
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/315 (43%), Positives = 201/315 (63%), Gaps = 4/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I++ +S + + L + GI+ LFP+Q M+G D++GR++TG+GKTLAFG+PI++K
Sbjct: 83 ITEFGLSDTLFSNLKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEK 142
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + G RNP L+L PTRELA QV E +P L T+ + GG P Q +
Sbjct: 143 LL---SRSGSRRNPGALILLPTRELATQVSSELSRLSPQLKTVTIVGGVPYHSQESRIRA 199
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR++DL ++ L+ +VQF VLDEAD ML GF E VE IL +P+ RQ +
Sbjct: 200 GVDIVVGTPGRIMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILSWVPETRQCV 259
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
M+SAT P W+ SLT KYLK+ +T+DLVG + + +S +I + + +++ +
Sbjct: 260 MWSATFPKWVTSLTKKYLKDAVTIDLVGSEEAHVPTTVSHKAINVPSNYRVVALQRILEK 319
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+A G+ +VFT+TK +A+ +A+ + + N + LHGD+SQ R T+ FR G L T
Sbjct: 320 YASQGQSLVFTETKHEANEIANGL-EGCNVQALHGDLSQGVRASTMQNFRKGLVKTLACT 378
Query: 401 DVAARGLDVPNVDLV 415
D+AARGLD+ NVDLV
Sbjct: 379 DIAARGLDIANVDLV 393
>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
Length = 710
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/345 (42%), Positives = 214/345 (62%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 112 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 171
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 172 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 231
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 232 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 291
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT PPW+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 292 NPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 351
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 352 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 411
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 412 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 452
>gi|449504709|ref|XP_002190981.2| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 716
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 142/322 (44%), Positives = 204/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFP+Q P G+D+I +ARTGTGKT +F IP+++K
Sbjct: 138 FSNFSISKETVQLLQARGVTYLFPVQVKTFNPVYTGKDVIAQARTGTGKTFSFAIPLIEK 197
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR P LVL PTRELA QV K+F + L C YGGTP + Q+ +
Sbjct: 198 LQGESQERRRGRPPKVLVLCPTRELANQVAKDFKDITRKLTVGCFYGGTPYNGQIDLMRS 257
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 258 GIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSED 317
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K +DL+G QK A + +I ++ ++I
Sbjct: 318 NPQTLLFSATCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEHLAIECHWSQRAAVI 377
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A+ LA + +C+ LHGDI Q QRE TL FR+G
Sbjct: 378 GDVIQVYSGSQGRTIVFCETKKEANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGS 437
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 438 FKVLVATNVAARGLDIPEVDLV 459
>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
melanoleuca]
Length = 739
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/345 (42%), Positives = 214/345 (62%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT PPW+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 321 NPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 380
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 381 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 441 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 481
>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
Length = 759
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 143/322 (44%), Positives = 205/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS + + L RG+S LF IQ G+D+IG+ARTGTGKT +F +P+++K
Sbjct: 168 FSNFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVPLVEK 227
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR P LVLAPTRELA QV K+F + L C YGG+ + Q+ A+
Sbjct: 228 LQSGDQERRRGRPPKVLVLAPTRELAIQVTKDFKDITRKLSVTCFYGGSSYNPQIDAIRS 287
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+LS++Q VVLDE DQML +GFAE VE IL + Q
Sbjct: 288 GIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSASYKKDAEQ 347
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
Q+++FSAT P W+ + KY+++ + VDL+G QK A + +IA ++ S+I
Sbjct: 348 KPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIACHWSQRASVI 407
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 408 GDVIQVYSGSHGRTIVFCETKKEATELSLNTSIKQSAQSLHGDIPQKQREVTLKGFRNGS 467
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 468 FEVLVATNVAARGLDIPEVDLV 489
>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
Length = 528
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 156/340 (45%), Positives = 213/340 (62%), Gaps = 13/340 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S+ +AAL +GI+ PIQ L A+ G D++G ARTGTGKTLAF +PI +++
Sbjct: 13 ELGLSEQALAALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAERL- 71
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
GR P LVLAPTRELA QV E AP L + VYGGT Q AL G
Sbjct: 72 --EPSRTPGRPPRALVLAPTRELALQVAGELEWVAPHLRIVTVYGGTGYGSQAAALKRGA 129
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VV TPGR ID + R L+L++V+ VLDEAD+MLS+GF E VE +L P RQ++MF
Sbjct: 130 DVVVATPGRAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGATPAERQTLMF 189
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SAT+P W + L ++LK P V++V D + + +I S + S + L+ HA
Sbjct: 190 SATLPGWAKRLVGRHLKEPTVVNVVQDEEVSYRE----IAIEASPSARMSALSDLL--HA 243
Query: 343 KG-GKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
G + IVFT+TK++AD +A A+ A+ + E +HGD++Q+QRER++ FR G+ +L+AT
Sbjct: 244 HGPERAIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVAT 303
Query: 401 DVAARGLDVPNVDL-VELVVLERKE-VQFLSTQISRPGKS 438
DVAARGLD+P VDL V L + ER E Q S + R G+S
Sbjct: 304 DVAARGLDIPEVDLVVHLRLPERAESYQHRSGRTGRAGRS 343
>gi|395501398|ref|XP_003755082.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Sarcophilus harrisii]
Length = 736
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 214/345 (62%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ IS++ V L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K
Sbjct: 136 FSRFPISEETVKLLKARGVTYLFPIQVKTFSPVYEGKDLIAQARTGTGKTFSFAIPLIEK 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E+ + R+P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 196 LQRDQEEMKKNRSPKVLVLAPTRELANQVAKDFQDITRKLSVACFYGGTPYQGQINHIRR 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE I+ +
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K +DLVG QK A + +I ++ ++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAAVI 375
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVIQVYSGNDGRAIIFCETKKNVAEMALNPHIKQNAQCLHGDIAQSQREITLKGFREGN 435
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 436 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 476
>gi|426255666|ref|XP_004021469.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Ovis aries]
Length = 644
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/345 (42%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIEK 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE IL +
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 379
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 380 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 440 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 480
>gi|426255664|ref|XP_004021468.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Ovis aries]
Length = 738
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/345 (42%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIEK 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE IL +
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 379
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 380 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 440 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 480
>gi|412985798|emb|CCO16998.1| predicted protein [Bathycoccus prasinos]
Length = 689
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 211/335 (62%), Gaps = 12/335 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+ L + +S ++V+AL ++GI LF IQ L+ A+ G+D++GRARTG GKTL
Sbjct: 75 DARTPNPLALENFSLSPEVVSALQKKGIDALFAIQAQTLDTALSGKDIVGRARTGCGKTL 134
Query: 152 AFGIPILDKIIKFNEK--HGR---GRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTIC 204
AF +PI+++I K + GR GR P+ VL PTRELAKQV +F A +L T+C
Sbjct: 135 AFVLPIVEQINKSDPTPASGRRLQGRRPVVCVLCPTRELAKQVGADFDWVGQAFNLKTVC 194
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG P Q + L G D +VGTPGRV D + R L ++F VLDEAD+ML++GF +
Sbjct: 195 VYGGAPYRDQEQGLRSGCDIIVGTPGRVKDHLDRKNLKFDNLKFRVLDEADEMLNMGFVD 254
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSI 323
DVE IL ++ + Q+++FSAT+PPW++ + ++LK T+DLVG+ QK + + +
Sbjct: 255 DVETIL-KVSGDIQTLLFSATLPPWVKDIAKRFLKKDYATIDLVGNEKQKASGQVQHLLL 313
Query: 324 ATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSY--NCEPLHGDISQS 380
E+ S+I LI A GG+CI+F TKRD L A+ S + LHGDI+Q+
Sbjct: 314 PCQWQERVSLIPDLIRAKAPTGGRCILFCDTKRDCTELCDALQSSLEKGAKALHGDIAQN 373
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
RE L FRD +F +L+ATDVAARGLD+ V+LV
Sbjct: 374 NREVVLQGFRDNKFQVLVATDVAARGLDISGVELV 408
>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 793
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/330 (43%), Positives = 209/330 (63%), Gaps = 6/330 (1%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D+ + + + +S +A L +GI LFPIQ P +G+D++ +ARTG+GKT
Sbjct: 187 DEEADNSEFALKNFGVSATSIANLHAQGIRTLFPIQAQTYHPIFEGKDIVAQARTGSGKT 246
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
L+F +P++++++K N + +GR P LV+APTRELA QV + F AP L +ICVYGG
Sbjct: 247 LSFALPVIERLLK-NPRSEKGRAPAVLVMAPTRELASQVHRVFESVAPQLASICVYGGVE 305
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q A+ G+D VVGTPGR+ID R L+L + ++LDEAD+ML VGF E+V+ I+
Sbjct: 306 YGPQELAMRKGLDVVVGTPGRLIDHYNRGNLSLRSIDVMILDEADRMLEVGFQENVDEIM 365
Query: 271 ERLP---QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
LP + ++FSATMP W+++LT KY + + + VDLV +DQ+ + I +I
Sbjct: 366 AGLPIGDAKPRILLFSATMPTWVKALTKKYQREDKVMVDLVSGTDQQTSTTIQHLAIRCP 425
Query: 327 MYEKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
E+ + IG ++ ++ G+C+VF TK +A+ LA + LHGDI+Q QRE T
Sbjct: 426 WQERANAIGDVVRVYSGSHGRCMVFASTKEEANDLALNGRIAGETHVLHGDIAQKQREIT 485
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLV 415
L+ FR G+F L+ATDVAARGLD+P V+LV
Sbjct: 486 LAGFRSGKFRCLVATDVAARGLDIPEVELV 515
>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
gi|296472173|tpg|DAA14288.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
gi|440895816|gb|ELR47910.1| ATP-dependent RNA helicase DDX50 [Bos grunniens mutus]
Length = 737
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE IL +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|431904164|gb|ELK09586.1| ATP-dependent RNA helicase DDX50 [Pteropus alecto]
Length = 738
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/346 (41%), Positives = 213/346 (61%), Gaps = 11/346 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S IS++ V L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++
Sbjct: 139 DFSNFPISEETVKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 198
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 RLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIR 258
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ---- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 NGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSE 318
Query: 276 -NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
N Q+++FSAT P W+ + KY+K VDLVG QK A + +I ++P++
Sbjct: 319 DNPQTLLFSATCPQWVYKVAKKYMKPRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAV 378
Query: 334 IGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 IGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREG 438
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 SFKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 480
>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
Length = 611
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/322 (44%), Positives = 202/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS + + L RGIS LF IQ +G+D+IG+ARTGTGKTLAF IP+++K
Sbjct: 35 FSNFRISPNTIKLLQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEK 94
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P L LAPTRELA QV K+F + L C YGG+ + Q+ A+
Sbjct: 95 LQNDPDDKRRGRAPKILCLAPTRELAIQVSKDFKDMTKKLSVTCFYGGSSYNPQLDAIRS 154
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ N L+LS+++ VVLDE DQML +GFAE VE IL Q
Sbjct: 155 GIDILVGTPGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSET 214
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + +Y++ VDL+G QK A + +IA ++ ++I
Sbjct: 215 NPQTLLFSATCPSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVI 274
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ IVF +TK+DA+ L+ + + + LHGDI Q QRE TL FR G
Sbjct: 275 GDVVQVYSGSHGRTIVFCETKKDANELSMNASIKQSSQSLHGDIPQKQREITLKGFRSGT 334
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 335 FEVLVATNVAARGLDIPEVDLV 356
>gi|345798960|ref|XP_850174.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Canis lupus
familiaris]
Length = 739
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 321 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 380
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 381 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 441 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 481
>gi|344237687|gb|EGV93790.1| ATP-dependent RNA helicase DDX50 [Cricetulus griseus]
Length = 670
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 128 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 187
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 188 LQRNQETVKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 247
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 248 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 307
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 308 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 367
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 368 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 427
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 428 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 468
>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 734
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 214/345 (62%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L+ C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLNVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 436 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 476
>gi|348575872|ref|XP_003473712.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Cavia porcellus]
Length = 735
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 138 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 197
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 198 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 257
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 258 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 317
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 318 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 377
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 378 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 437
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 438 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 478
>gi|355683371|gb|AER97085.1| DEAD box polypeptide 50 [Mustela putorius furo]
Length = 736
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
Length = 735
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 137 FSNFSISEETVKLLKGRGVTYLFPIQVKTFGPIYEGKDLIAQARTGTGKTFSFAIPLIER 196
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 197 LQRNQETVKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 256
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 257 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 316
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 317 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 376
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 377 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 436
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 437 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 477
>gi|452824703|gb|EME31704.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 758
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 152/329 (46%), Positives = 210/329 (63%), Gaps = 16/329 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ +S+ I+ L RG+ PIQ A E GRD+IGR+RTGTGKTLAF +PI+ K
Sbjct: 192 FTSFQLSKKILEILEERGLRDATPIQSATFELIYSGRDIIGRSRTGTGKTLAFVLPIMQK 251
Query: 161 IIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMR 216
+++ E H R CLVLAPTRELAKQVE+EF A T C +GG+ Q R
Sbjct: 252 LVEQLETHNIDRVSEIQCLVLAPTRELAKQVEQEFSAFAKCFRFRTSCFFGGSSYEVQQR 311
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-- 274
A+ G+D +V TPGR+IDL++R +++L +V+F VLDEAD+MLS+GFAED++ I LP
Sbjct: 312 AIKRGIDILVATPGRLIDLLERGSVDLLKVKFFVLDEADEMLSMGFAEDIDKISTYLPPT 371
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA---DGISLYSIATSMYEK- 330
+ RQ+++FSAT+PPW++ L NP+ VD +G+ D K + + I+L T + K
Sbjct: 372 RERQTLLFSATIPPWVQELAKSNKNNPIIVDAIGNKDTKTSTTVEHIALRVPPTELSRKL 431
Query: 331 --PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYN--CEPLHGDISQSQRERTL 386
S+I + + +CIVF +TK + D L + + +N + LHGDI+Q QRE TL
Sbjct: 432 ILESVIS-VYSAEMTNFRCIVFARTKAEVDSLVSS-GRIHNGAAQALHGDITQKQREITL 489
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLV 415
S FR+G F +LIATDVAARGLD+ VDLV
Sbjct: 490 SKFREGSFQVLIATDVAARGLDINGVDLV 518
>gi|410975243|ref|XP_003994043.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Felis catus]
Length = 645
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 321 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 380
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 381 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 441 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 481
>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
Length = 669
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 71 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 130
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 131 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 190
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 191 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 250
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 251 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 310
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 311 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 370
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 371 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 411
>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
Length = 738
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 379
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 380 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 440 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 480
>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
Length = 689
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 214/345 (62%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L+ C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLNVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 436 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 476
>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
leucogenys]
Length = 737
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
gi|55976576|sp|Q99MJ9.1|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
Length = 734
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 436 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 476
>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pongo
abelii]
gi|55976580|sp|Q9BQ39.1|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
Length = 737
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|384475931|ref|NP_001245111.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
jacchus]
gi|380816428|gb|AFE80088.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|383421495|gb|AFH33961.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|384949360|gb|AFI38285.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
Length = 737
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
Length = 734
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 436 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 476
>gi|410349717|gb|JAA41462.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
troglodytes]
gi|397489928|ref|XP_003815963.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
paniscus]
Length = 643
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
Length = 624
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 71 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 130
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 131 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 190
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 191 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 250
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 251 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 310
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 311 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 370
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 371 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 411
>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
troglodytes]
gi|397489926|ref|XP_003815962.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
paniscus]
gi|410227544|gb|JAA10991.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410259742|gb|JAA17837.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410288618|gb|JAA22909.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|410975241|ref|XP_003994042.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Felis catus]
Length = 739
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 321 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 380
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 381 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 441 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 481
>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835, partial [Chlorella
variabilis]
Length = 608
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 209/325 (64%), Gaps = 8/325 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S+ + + L +GI LF IQ L P ++G+D++GRARTG GKTLAF +PI+
Sbjct: 3 LALDNFKLSEPVKSLLRAKGIEALFDIQAQCLPPLLEGQDLVGRARTGCGKTLAFVLPIV 62
Query: 159 DKIIKFNEKHGR---GRNPLCLVLAPTRELAKQV--EKEFHESAPSLDTICVYGGTPISH 213
+++ G+ GR P +VLAPTRELAKQV + E++ A SL T+C+YGGT
Sbjct: 63 ERLAGGQGAGGKRAFGRAPSVVVLAPTRELAKQVAADFEYYAKAFSLTTVCLYGGTQYGP 122
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q L GVD V+GTPGRV D ++R L L++++F VLDE D+ML++GF EDVE IL
Sbjct: 123 QEGMLRRGVDVVIGTPGRVKDHLERGTLKLNQLRFRVLDECDEMLNMGFVEDVEKILNAG 182
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEK 330
Q+++FSAT+P W++ +T ++LK T VDLVG K + + + ++
Sbjct: 183 VDAATVQTLLFSATLPHWVKDITKRFLKPGFTTVDLVGSQKMKASTSVRHLLLPCHWSQR 242
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
I+ L+ + G+ I+FT+TK DA+ L+ +A+S+ LHGDI Q QRE TL+ FR
Sbjct: 243 SQIVPDLVKCYGVCGRTIIFTETKNDANELSGTLAESFGARALHGDIPQGQREVTLAGFR 302
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
G+F++L+ATDVAARGLD+ V+LV
Sbjct: 303 SGKFSVLVATDVAARGLDISGVELV 327
>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
leucogenys]
Length = 643
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|395741709|ref|XP_003777630.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pongo
abelii]
gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
Length = 643
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|395820612|ref|XP_003783657.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Otolemur garnettii]
Length = 737
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRSQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
Length = 689
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 436 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 476
>gi|351702494|gb|EHB05413.1| ATP-dependent RNA helicase DDX50 [Heterocephalus glaber]
Length = 737
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQEAIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D ++GTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILIGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|338716830|ref|XP_003363525.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Equus
caballus]
Length = 644
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 379
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 380 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 440 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 480
>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
jacchus]
Length = 643
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|338716828|ref|XP_001503679.3| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Equus
caballus]
Length = 739
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 379
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 380 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 440 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 480
>gi|344275095|ref|XP_003409349.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Loxodonta africana]
Length = 734
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
Length = 638
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 40 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 99
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 100 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 159
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 160 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 219
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 220 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 279
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 280 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 339
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 340 FGVLVATNVAARGLDIPEVDLV 361
>gi|126343381|ref|XP_001380653.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Monodelphis domestica]
Length = 744
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 214/345 (62%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K
Sbjct: 144 FSRFPISEETIKLLKARGVTYLFPIQVKAFSPVYEGKDLIAQARTGTGKTFSFAIPLIEK 203
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E+ + R+P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 204 LQRDQEELKKTRSPKVLVLAPTRELANQVAKDFQDITRKLSVACFYGGTPYQGQINHIRR 263
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE I+ +
Sbjct: 264 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGSED 323
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K +DLVG QK A + +I ++ ++I
Sbjct: 324 NPQTLLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAAVI 383
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 384 GDVIQVYSGNDGRAIIFCETKKNVAEMALNPHIKQNAQCLHGDIAQSQREITLKGFREGS 443
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 444 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 484
>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
Length = 711
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 141/320 (44%), Positives = 200/320 (62%), Gaps = 6/320 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ DIS L + G LFPIQ + M G D+ G+ARTG GKTL+F +P+++K
Sbjct: 118 LDNFDISDKSRNNLEKHGYKYLFPIQAKTFDLIMAGNDIFGKARTGEGKTLSFALPVIEK 177
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LV+APTRELA QV +EF + PSL + C+YGGT Q RA
Sbjct: 178 LLA-SPDTTRGRRPRVLVMAPTRELASQVWREFQKVGPSLASTCIYGGTDYEPQRRAFRN 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL----ERLPQN 276
G+D VVGTPGR++D ++ AL L+ +Q++VLDEAD+ML VGF + VE +L E+ Q
Sbjct: 237 GLDVVVGTPGRLMDHMESGALQLTNLQYLVLDEADRMLEVGFVDTVEKMLSMAVEQAGQK 296
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP+I+S KY+ VD VG + + G+ ++ + ++I
Sbjct: 297 PQMILFSATMPPFIKSTLTKYMPEHKVVDTVGKEMNRTSTGVQHLALRCPWQARNTVIAD 356
Query: 337 LITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ ++ G+ ++FTQTKRDA+ LA + LHGDI+Q QRE +L FRDG+
Sbjct: 357 VVQVYSGAHGRTMIFTQTKRDANELALNDTLKQEVQVLHGDIAQKQRELSLQCFRDGKVR 416
Query: 396 ILIATDVAARGLDVPNVDLV 415
L+ATDVAARG+D+P VDLV
Sbjct: 417 CLVATDVAARGIDIPEVDLV 436
>gi|348672301|gb|EGZ12121.1| hypothetical protein PHYSODRAFT_547952 [Phytophthora sojae]
Length = 654
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 214/340 (62%), Gaps = 6/340 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I +SQ+ L R G++ LFP+Q + M+G D++GR++TG+GKTLAF +PI++
Sbjct: 57 IEDFALSQETQRNLLRAGVTHLFPVQTQSFDVMMRGADIMGRSKTGSGKTLAFALPIVET 116
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
I+ N K+ R NP LVL PTRELA+QV E AP L T+ V GG + Q L
Sbjct: 117 ILA-NRKNTR--NPQALVLLPTRELAQQVHDEVQRVAPQLRTVNVVGGVSYTVQENHLRR 173
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G D +VGTPGR++DL+ + +L+L +V VLDEAD ML GF E VE IL +P+ Q++
Sbjct: 174 GADILVGTPGRIMDLVDKGSLSLDDVDVAVLDEADMMLKFGFQEAVETILGWVPEGGQTV 233
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
M+SAT P W+ S+ K+LK P+++DLVGD D ++ ++ +I + ++ ++ ++
Sbjct: 234 MWSATFPKWVSSMAKKFLKEPVSIDLVGDEDNQVPATVAHKAINAPVRDRIQVLENVLRL 293
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
HA G+ +VFT+TK++AD +A+++ + LHGD+SQ R T+S FR+G L+ T
Sbjct: 294 HAHDGQTLVFTETKQEADEIANSLP-GQDARALHGDLSQGMRTSTMSGFRNGHVKTLVCT 352
Query: 401 DVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
D+AARGLD+ NV+LV L + F+ + + R G+S
Sbjct: 353 DIAARGLDIANVELVVQYRLPSDKESFVHRAGRTGRAGRS 392
>gi|432106714|gb|ELK32366.1| ATP-dependent RNA helicase DDX50 [Myotis davidii]
Length = 721
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 212/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 138 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 197
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 198 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 257
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE I+
Sbjct: 258 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFADQVEDIIHESYKTDAED 317
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 318 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 377
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 378 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 437
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 438 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 478
>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
gi|123780397|sp|Q3B8Q1.1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
Length = 782
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 184 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 244 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 364 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 423
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 424 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 483
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 484 FGVLVATNVAARGLDIPEVDLV 505
>gi|224052119|ref|XP_002191015.1| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 589
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 199/322 (61%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +SQ+ V L RGI LFP+Q +P G+D+I +ARTGTGKT +F +P+++K
Sbjct: 24 FSNFPLSQNTVKLLTARGIKYLFPVQVKTFQPIYDGKDVIAQARTGTGKTFSFALPLIEK 83
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVL PTRELA QV K+F L C YGG+P Q+ L
Sbjct: 84 LQSVTQDGRRGRAPKVLVLVPTRELATQVAKDFKNLTKKLSVACFYGGSPYKEQLDLLKS 143
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL----ERLPQN 276
G+D +VGTPGR+ D I+ + L LS V+ VVLDE D ML +GFAE VE IL +R +N
Sbjct: 144 GIDILVGTPGRIQDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEILGSSYKRGSEN 203
Query: 277 R-QSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
Q+++FSAT P W+ + KY+++ +DL+G Q+ A + +I ++ ++
Sbjct: 204 NPQTLLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAIQCRSSQRAGVL 263
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A+ LA + + + LHGDI Q QRE TL FR+G
Sbjct: 264 GDIIQVYSGSRGRTIVFCETKKEANELAMNASLKQDAQSLHGDIPQKQREITLKGFRNGV 323
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +LIAT+VAARGLD+P VDLV
Sbjct: 324 FEVLIATNVAARGLDIPEVDLV 345
>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
musculus]
Length = 805
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 214 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 273
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 274 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 333
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 334 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 393
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 394 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 453
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 454 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 513
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 514 FGVLVATNVAARGLDIPEVDLV 535
>gi|428186550|gb|EKX55400.1| hypothetical protein GUITHDRAFT_57670, partial [Guillardia theta
CCMP2712]
Length = 513
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/323 (46%), Positives = 201/323 (62%), Gaps = 18/323 (5%)
Query: 111 VAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK--- 167
V L GI+ LFPIQ A M+G+D+I RARTGTGKTL+F +P+ +++++ E+
Sbjct: 3 VEKLKAGGITSLFPIQSATFNHVMEGKDLIARARTGTGKTLSFILPVHEQMLRLKEEGEL 62
Query: 168 --HGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
GR P CL+L+PTRELAKQ+ K +A + VYGG + Q +AL GVD
Sbjct: 63 DTRKYGRTPSCLILSPTRELAKQIAKVLEMVAADGFSVLTVYGGVAYAEQGQALRKGVDW 122
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--------ERLPQN 276
VVGTPGRVID ++R L L+ V++ VLDEAD+ML++GF + V+ I E P++
Sbjct: 123 VVGTPGRVIDFMERGQLKLNNVRYFVLDEADEMLNIGFKDAVDKIFKGVMGEEAESKPEH 182
Query: 277 RQSMMFSATMPPWIRSLTNKYL--KNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSI 333
Q+++FSAT+P WI T KY N VDLV G Q+ A I I +
Sbjct: 183 VQTLLFSATIPDWIAQTTEKYFDKNNTAHVDLVSGQQGQETATRIEHLCIPCPWNSRART 242
Query: 334 IGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG ++ +A GK I+FT+TK++A+ LA A +C LHGDI+Q+QRE T AFRDG
Sbjct: 243 IGDIVLCYAGSHGKTIIFTETKKEANELALDDAIKQDCAVLHGDIAQAQRETTFQAFRDG 302
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+F L+ATDVAARGLD+P VDLV
Sbjct: 303 KFRCLVATDVAARGLDIPEVDLV 325
>gi|21410145|gb|AAH30895.1| Ddx21 protein, partial [Mus musculus]
Length = 689
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 98 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 157
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 158 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 217
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 218 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 277
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 278 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 337
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 338 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 397
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 398 FGVLVATNVAARGLDIPEVDLV 419
>gi|255081336|ref|XP_002507890.1| predicted protein [Micromonas sp. RCC299]
gi|226523166|gb|ACO69148.1| predicted protein [Micromonas sp. RCC299]
Length = 631
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/337 (43%), Positives = 207/337 (61%), Gaps = 14/337 (4%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+S DE +S ++S+++ A L +GI+ L+ IQ +P + G+D++GRARTG GKTL
Sbjct: 20 DASVDEN-HVSNFNLSKEVCARLETKGITSLYSIQAQCFQPILDGKDLVGRARTGCGKTL 78
Query: 152 AFGIPILDKIIKFNE-----KHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTIC 204
AF +PI++ I + N + +GR P+ +LAPTRELAKQV +F A L +IC
Sbjct: 79 AFVLPIVEVINRENPMPASGRRVQGRRPVVALLAPTRELAKQVHSDFQHIGQAFGLTSIC 138
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG P Q RAL G D V+GTPGRV D + R L+ +++F VLDEAD+ML++GF E
Sbjct: 139 VYGGAPYGEQERALRQGCDIVIGTPGRVKDHLDRKTLSFEKLRFRVLDEADEMLNMGFVE 198
Query: 265 DVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGISLY 321
D+E IL N Q+++FSAT+P W+ ++ ++L T+DLVGD QK + +
Sbjct: 199 DIETILNHAKDNANLQTVLFSATLPKWVADISKRFLVPGYTTIDLVGDEKQKASGSVQHM 258
Query: 322 SIATSMYEKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSY--NCEPLHGDIS 378
I E+ ++ LI G G+ IVF TKRD L A+ K + LHGD++
Sbjct: 259 LINCQWSERTDLVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKALHGDVN 318
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
QSQRE L FR +F L+ATDVAARGLD+ V+LV
Sbjct: 319 QSQREVVLDGFRKNKFQTLVATDVAARGLDISGVELV 355
>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
Length = 851
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 560 FGVLVATNVAARGLDIPEVDLV 581
>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
gi|341940509|sp|Q9JIK5.3|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
musculus]
Length = 851
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 560 FGVLVATNVAARGLDIPEVDLV 581
>gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
Length = 851
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 560 FGVLVATNVAARGLDIPEVDLV 581
>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
Length = 832
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 241 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 300
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 301 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 360
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 361 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 420
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 421 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 480
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 481 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 540
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 541 FGVLVATNVAARGLDIPEVDLV 562
>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
Length = 851
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 560 FGVLVATNVAARGLDIPEVDLV 581
>gi|348509639|ref|XP_003442355.1| PREDICTED: nucleolar RNA helicase 2-like [Oreochromis niloticus]
Length = 755
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/322 (44%), Positives = 203/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG+S LF IQ G D+I +ARTGTGKT +F IP+++K
Sbjct: 160 FSNFRISKVTIDKLKARGVSYLFDIQVKTFNHVYDGEDVIAQARTGTGKTFSFAIPLVEK 219
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ K + + RGR P LVL PTRELA QV K+F + A + C YGG+ + Q+ A+
Sbjct: 220 LQKDSVEMARGRPPKVLVLTPTRELAIQVAKDFKDIAKRVSIACFYGGSSYNPQIDAIRN 279
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ N LNL++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 280 GIDILVGTPGRIKDHIQNNKLNLTKVKHVVLDEVDQMLDMGFAEQVEEILGSSYKKDSDT 339
Query: 276 NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT PPW+ + KY++ N +DL+G QK A + +I ++ ++I
Sbjct: 340 NPQTLLFSATCPPWVYEVAKKYMRPNCKHIDLIGKKTQKAATTVEHLAITCHWSQRAAVI 399
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A+ L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 400 GDVIQVYSGSHGRTIVFCETKKEANELSMNASIKQSTQSLHGDIPQKQREMTLKGFRNGA 459
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 460 FEVLVATNVAARGLDIPEVDLV 481
>gi|422294259|gb|EKU21559.1| dead deah box rna [Nannochloropsis gaditana CCMP526]
Length = 737
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/324 (45%), Positives = 200/324 (61%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S ISQ L RGI LFPIQ L+ + G D+IGRARTG GKTLAF +P+++
Sbjct: 144 LSNFKISQATRTRLEARGIKSLFPIQSMTLQKILDGCDLIGRARTGCGKTLAFALPVVEL 203
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALD 219
I +E+ RG P LVLAPTRELAKQV EF AP +L ++C+YGG P Q AL
Sbjct: 204 I--GDEREERGAPPKVLVLAPTRELAKQVADEFEACAPATLRSVCIYGGAPYRPQEEALR 261
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN--- 276
GV VVGTPGR++D I+R L LS ++F++LDEAD ML +GF +D++ + + + Q+
Sbjct: 262 RGVQVVVGTPGRILDHIERGTLKLSGLRFLILDEADSMLDMGFKDDIQKVCDAMGQDSHQ 321
Query: 277 -RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
RQ ++FSAT+PPW++ + +Y++ + VDLV D K + + +I PS
Sbjct: 322 RRQVLLFSATLPPWVQKVAQQYMRKDKLVQVDLVQGEDAKASTDVRHVAIPCHWSSMPST 381
Query: 334 IGQLITEHAKGGKC--IVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+ + + K IVF +TK++ + L C LHGDI Q+QRE TL AFR+
Sbjct: 382 VADCLAVYGGSNKARTIVFCETKKECNELVVNPVIKTECAALHGDIPQAQRETTLKAFRE 441
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
GR +L+ATDVAARGLD+ VDLV
Sbjct: 442 GRVRVLVATDVAARGLDM-TVDLV 464
>gi|395501396|ref|XP_003755081.1| PREDICTED: nucleolar RNA helicase 2 [Sarcophilus harrisii]
Length = 798
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 202/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 154 FSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLIEK 213
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTREL+ QV K+F + L C YGGTP + Q+ +
Sbjct: 214 LQGDTQPRARGRAPKILVLAPTRELSIQVSKDFSDITRKLTVACFYGGTPYNGQIDLIRR 273
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+LS+VQ VVLDE DQML +GFAE VE IL +
Sbjct: 274 GIDILVGTPGRIKDHLQNGRLDLSKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDSED 333
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 334 NPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAAVI 393
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G+
Sbjct: 394 GDVIQVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLHGDIPQKQREITLQGFRNGK 453
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 454 FGVLVATNVAARGLDIPEVDLV 475
>gi|440895815|gb|ELR47909.1| Nucleolar RNA helicase 2, partial [Bos grunniens mutus]
Length = 680
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 203/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 248
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 249 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIERMKN 308
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 309 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 368
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 369 NPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 428
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ +A + + LHGDI Q QRE TL FR+G
Sbjct: 429 GDVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGD 488
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 489 FGVLVATNVAARGLDIPEVDLV 510
>gi|303277565|ref|XP_003058076.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460733|gb|EEH58027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 748
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/343 (41%), Positives = 212/343 (61%), Gaps = 13/343 (3%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D D S +D+ L +S +IS+++ A L +GI+ L+ IQ + + G+D++ RA+T
Sbjct: 114 DEANEDASPEDDPLRVSNFNISREVCARLETKGITSLYGIQAQTFQHVLDGKDIVARAKT 173
Query: 146 GTGKTLAFGIPILDKI-----IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAP 198
G GKTLAF +PI++ I + N + +GR P+ +LAPTRELAKQV +F A
Sbjct: 174 GCGKTLAFVLPIVEAINREHPVPANGRRAQGRAPVVALLAPTRELAKQVHADFQHIGHAF 233
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L ICVYGG P Q R L G D V+GTPGR+ D ++R L+ +++F VLDEAD+ML
Sbjct: 234 KLTAICVYGGAPYGDQQRLLRAGCDIVIGTPGRMKDHLERKTLSFDKLRFRVLDEADEML 293
Query: 259 SVGFAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLA 315
++GF ED+E+IL N Q+++FSAT+P W+ ++ ++L+ + +TVDLVGD QK +
Sbjct: 294 NMGFVEDIEMILNHAKDNEKLQTLLFSATLPKWVADISRRFLQPDHVTVDLVGDEKQKAS 353
Query: 316 DGISLYSIATSMYEKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYN--CEP 372
++ + E+ ++ LI G G+ IVF TKRD L A+ K +
Sbjct: 354 AAVTHMLLNCQWSERTELVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKA 413
Query: 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
LHGD++Q+QRE L+ FR +F L+ATDVAARGLD+ V+LV
Sbjct: 414 LHGDVNQAQREVVLAGFRANKFQTLVATDVAARGLDISGVELV 456
>gi|351702495|gb|EHB05414.1| Nucleolar RNA helicase 2 [Heterocephalus glaber]
Length = 777
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 11/360 (3%)
Query: 63 HAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKL 122
+ S P S A + + S ++ + + + EG S IS++ V L RG++ L
Sbjct: 148 NGFSHPKADSSDAASEESNSEIEQEIPVE---QKEGA-FSNFPISEETVKLLKARGVTFL 203
Query: 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182
FPIQ G+D+I +ARTGTGKT +F IP+++K+ + RGR P LVLAPT
Sbjct: 204 FPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGQLQDRKRGRAPQVLVLAPT 263
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELA QV ++F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+
Sbjct: 264 RELANQVSRDFSDITKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLD 323
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKY 297
LS+++ VVLDE DQML +GFAE VE IL + N Q+++FSAT P W+ ++ KY
Sbjct: 324 LSKLKHVVLDEVDQMLDMGFAEQVEDILCVAYKKDSEDNPQTLLFSATCPSWVFNVAKKY 383
Query: 298 LKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKR 355
+K+ VDL+G QK A + +I ++ ++IG +I ++ G+ IVF +TK+
Sbjct: 384 MKSIYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIVFCETKK 443
Query: 356 DADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+A L+ + + + LHGDI Q QRE TL FR+G F +++AT+VAARGLD+P VDLV
Sbjct: 444 EAQELSQNASIKQDAQSLHGDIPQKQREITLKGFRNGDFGVMVATNVAARGLDIPEVDLV 503
>gi|452819914|gb|EME26964.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 671
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 211/341 (61%), Gaps = 4/341 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L I ++ L GI++LFP+Q+ P QG+D++ R++TGTGKTLA+ +P+++K
Sbjct: 83 VDNLPIREETKERLKASGITRLFPVQQKCWNPIWQGKDVVVRSQTGTGKTLAYVLPLIEK 142
Query: 161 --IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+ F R +P +VLAPTRELA+QV +EF + +L C+YGG P Q L
Sbjct: 143 ASLGHFKAHTKRTGSPFIVVLAPTRELARQVFEEFGKLETTLLGACIYGGAPYRPQEEQL 202
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ +VGTPGRV D+ ++N L+L VQ +VLDEAD+ML +GFA ++E IL + N+Q
Sbjct: 203 RNCLSFLVGTPGRVADMCRKNLLHLELVQCIVLDEADRMLEIGFASELEQILSAVSGNKQ 262
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVG-DSDQKLADGISLYSIATSMYEKPSIIGQL 337
+++FSAT+P W++ + K ++NP +DLVG D D K+ + Y+I + K ++IG +
Sbjct: 263 TLLFSATLPTWVKQQSAKNMRNPAFLDLVGEDKDAKIPKDVKHYAIEVPPFAKEAVIGDI 322
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
++ G KCI+FT TKR+AD L + +HGDI Q RE ++ FR G+F L
Sbjct: 323 LSVFG-GEKCIIFTPTKREADMLGSSEYIRDESTVIHGDIPQDGRELAINGFRKGKFRNL 381
Query: 398 IATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
IATDVAARG+D+PNVD V + + + + R G++
Sbjct: 382 IATDVAARGIDIPNVDFVLMTYTPTPTPESIDMYVHRSGRT 422
>gi|426364958|ref|XP_004049558.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Gorilla gorilla
gorilla]
Length = 715
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 420 FGVLVATNVAARGLDIPEVDLV 441
>gi|397489924|ref|XP_003815961.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan paniscus]
Length = 715
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 420 FGVLVATNVAARGLDIPEVDLV 441
>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
Length = 715
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 420 FGVLVATNVAARGLDIPEVDLV 441
>gi|344237686|gb|EGV93789.1| Nucleolar RNA helicase 2 [Cricetulus griseus]
Length = 729
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 199/322 (61%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S ISQ+ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 140 FSNFPISQETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV +F + L C YGGTP Q+ +
Sbjct: 200 LQGGLQDKKRGRAPQVLVLAPTRELANQVSNDFSDITKKLSVACFYGGTPYGGQIDCIRS 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 260 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 320 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWSERAAVI 379
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TKR+A L+ + + LHGDI Q QRE TL FR+G
Sbjct: 380 GDVIRVYSGHQGRTIIFCETKREAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGS 439
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 440 FGVLVATNVAARGLDIPEVDLV 461
>gi|379317177|ref|NP_001243839.1| nucleolar RNA helicase 2 isoform 2 [Homo sapiens]
gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
sapiens]
gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
Length = 715
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 420 FGVLVATNVAARGLDIPEVDLV 441
>gi|417515609|gb|JAA53623.1| DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Sus scrofa]
Length = 784
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 202/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 248
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 249 LQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIDRMRN 308
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 309 GIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 368
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 369 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 428
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 429 GDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQDAQSLHGDIPQKQREITLKGFRNGD 488
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 489 FGVLVATNVAARGLDIPEVDLV 510
>gi|334349455|ref|XP_001380649.2| PREDICTED: nucleolar RNA helicase 2-like [Monodelphis domestica]
Length = 887
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 203/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 341 FSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLVEK 400
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTREL+ QV K+F + L C YGGTP + Q+ +
Sbjct: 401 LQGDSQPRPRGRAPKILVLAPTRELSIQVSKDFSDITKKLTVACFYGGTPYNGQIDLIRR 460
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++VQ VVLDE DQML +GFAE VE IL +
Sbjct: 461 GIDILVGTPGRIKDHLQNGRLDLTKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDSED 520
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 521 NPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAAVI 580
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G+
Sbjct: 581 GDVIQVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLHGDIPQKQREITLQGFRNGK 640
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 641 FGVLVATNVAARGLDIPEVDLV 662
>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
gi|296472163|tpg|DAA14278.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
Length = 784
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 203/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 248
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 249 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIERMKN 308
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 309 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 368
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 369 NPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 428
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ +A + + LHGDI Q QRE TL FR+G
Sbjct: 429 GDVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQDAQSLHGDIPQKQREITLKGFRNGD 488
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 489 FGVLVATNVAARGLDIPEVDLV 510
>gi|397489922|ref|XP_003815960.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan paniscus]
Length = 783
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|350592792|ref|XP_001928807.4| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
scrofa]
Length = 844
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 202/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 249 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 308
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 309 LQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIDRMRN 368
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 369 GIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 428
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 429 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 488
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 489 GDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQDAQSLHGDIPQKQREITLKGFRNGD 548
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 549 FGVLVATNVAARGLDIPEVDLV 570
>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2 [Pongo abelii]
Length = 783
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
gi|410222082|gb|JAA08260.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252906|gb|JAA14420.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252908|gb|JAA14421.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252910|gb|JAA14422.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410292262|gb|JAA24731.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
Length = 783
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|417404458|gb|JAA48981.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 765
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 203/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 250 LLGELQERKRGRAPQVLVLAPTRELANQVSKDFIDITKKLAVACFYGGTPYGGQLERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 370 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 429
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGFHGRTIIFCETKKEAQELSQNASIRQDAQSLHGDIPQKQREITLKGFRNGD 489
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 490 FGVLVATNVAARGLDIPEVDLV 511
>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 isoform 1 [Homo sapiens]
gi|76803555|sp|Q9NR30.5|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
sapiens]
gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
Length = 783
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 654
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 143/328 (43%), Positives = 209/328 (63%), Gaps = 12/328 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S+ + A L ++G LF IQ LE A+ G+D++GRARTG GKTLAF +PI+
Sbjct: 83 LALDNFALSEPVKATLRKKGFDALFAIQAETLEIALSGKDVVGRARTGCGKTLAFVLPIV 142
Query: 159 DKIIKF-----NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPI 211
+++ K N + +GR P+C+VLAPTRELAKQV +F S ++CVYGGTP
Sbjct: 143 EEMAKISPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFKSVCVYGGTPY 202
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q L G D V+GTPGR+ D ++R L + +++F VLDEAD+ML++GF +DVE+IL
Sbjct: 203 REQEMGLRGGCDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELIL- 261
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
+ + Q+++FSAT+PPW++ + ++LK + TVDLVGD QK + + + ++
Sbjct: 262 KSSGDVQTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHMLLPCQWSDR 321
Query: 331 PSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSY--NCEPLHGDISQSQRERTLS 387
++ +I A GG+ IVF TKRD L + K + LHGD+SQ QRE L+
Sbjct: 322 VDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQREVVLA 381
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
FR+ +F +L+ATDVAARGLD+ V+LV
Sbjct: 382 GFREDKFQVLVATDVAARGLDITGVELV 409
>gi|1230564|gb|AAB02546.1| Gu protein, partial [Homo sapiens]
Length = 801
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 206 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 265
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 266 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 325
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 326 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 385
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 386 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 445
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 446 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 505
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 506 FGVLVATNVAARGLDIPEVDLV 527
>gi|426364956|ref|XP_004049557.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Gorilla gorilla
gorilla]
Length = 783
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|354475482|ref|XP_003499957.1| PREDICTED: nucleolar RNA helicase 2-like [Cricetulus griseus]
Length = 806
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 199/322 (61%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S ISQ+ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 217 FSNFPISQETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 276
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV +F + L C YGGTP Q+ +
Sbjct: 277 LQGGLQDKKRGRAPQVLVLAPTRELANQVSNDFSDITKKLSVACFYGGTPYGGQIDCIRS 336
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 337 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 396
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 397 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWSERAAVI 456
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TKR+A L+ + + LHGDI Q QRE TL FR+G
Sbjct: 457 GDVIRVYSGHQGRTIIFCETKREAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGS 516
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 517 FGVLVATNVAARGLDIPEVDLV 538
>gi|417404608|gb|JAA49048.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 785
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 203/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 250 LLGELQERKRGRAPQVLVLAPTRELANQVSKDFIDITKKLAVACFYGGTPYGGQLERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 370 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 429
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGFHGRTIIFCETKKEAQELSQNASIRQDAQSLHGDIPQKQREITLKGFRNGD 489
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 490 FGVLVATNVAARGLDIPEVDLV 511
>gi|355782883|gb|EHH64804.1| hypothetical protein EGM_18115 [Macaca fascicularis]
Length = 783
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
Length = 517
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 202/320 (63%), Gaps = 9/320 (2%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+ ++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +P
Sbjct: 6 QSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALP 65
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
I +++ E RGR P LVL PTRELA QV E AP L + VYGGT Q
Sbjct: 66 IAERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKE 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +
Sbjct: 123 ALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSAT+P W + L +Y+KNP+ ++++ D + ++ + + ++
Sbjct: 183 RQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSD 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ A + +VFT+TK + + +A + + + + LHGD+SQ +RER L AFR G
Sbjct: 239 LLY-VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 297
Query: 396 ILIATDVAARGLDVPNVDLV 415
+L+ATDVAARGLD+P VDLV
Sbjct: 298 VLVATDVAARGLDIPQVDLV 317
>gi|451172075|ref|NP_001263383.1| nucleolar RNA helicase 2 [Ovis aries]
Length = 783
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 203/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 248 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIERMKN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ +A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGFQGRTIIFCETKKEAQELSQNVAIRQDAQSLHGDIPQKQREITLKGFRNGD 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|410925948|ref|XP_003976441.1| PREDICTED: nucleolar RNA helicase 2-like [Takifugu rubripes]
Length = 713
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 142/322 (44%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS + L RG+S LF IQ + G D+I +ARTGTGKT +F IP+++K
Sbjct: 132 FSNFRISPVTINKLKARGVSYLFDIQVKTFDSVYDGEDVIAQARTGTGKTFSFAIPLVEK 191
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVL PTRELA QV K+F + L +C YGGT Q+ A+
Sbjct: 192 LQRDSAGPARGRAPKVLVLTPTRELAIQVAKDFKDIIKKLSIVCFYGGTSYMPQIDAIRN 251
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+LS+++ VVLDE DQML +GFAE VE IL +
Sbjct: 252 GIDILVGTPGRIKDHLQNNKLDLSKLKHVVLDEVDQMLDMGFAEQVEEILASSYKKDADT 311
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT PPW+ + KY++ VDL+G QK A + +IA ++ ++I
Sbjct: 312 NPQTLLFSATCPPWVYDVAKKYMRPKCKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVI 371
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A+ L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 372 GDVIQVYSGSHGRTIVFCETKKEANELSMNASIKQSTQSLHGDIPQKQRETTLKGFRNGS 431
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 432 FEVLVATNVAARGLDIPEVDLV 453
>gi|402880640|ref|XP_003903906.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Papio anubis]
Length = 715
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 420 FGVLVATNVAARGLDIPEVDLV 441
>gi|431904163|gb|ELK09585.1| Nucleolar RNA helicase 2 [Pteropus alecto]
Length = 784
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 217/357 (60%), Gaps = 11/357 (3%)
Query: 66 SRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPI 125
S P + IA + + S ++ + + + EG S IS+ + L RG++ LFPI
Sbjct: 158 SGPDSNSNEIASEESNSELEQEIPVE---QKEGA-FSNFPISEGTIKLLKARGVTFLFPI 213
Query: 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185
Q G+D+I +ARTGTGKT +F IP+++K++ + RGR P LVLAPTREL
Sbjct: 214 QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLLGELQDRKRGRAPQVLVLAPTREL 273
Query: 186 AKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE 245
A QV K+F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+L++
Sbjct: 274 ANQVSKDFSDITKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTK 333
Query: 246 VQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
++ VVLDE DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+K+
Sbjct: 334 LKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKS 393
Query: 301 PL-TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDAD 358
VDL+G QK A + +I ++ ++IG +I ++ G+ I+F +TK++A
Sbjct: 394 TYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQ 453
Query: 359 RLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
L+ ++ + + LHGDI Q QRE TL FR+G F +L+AT+VAARGLD+P VDLV
Sbjct: 454 ELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLV 510
>gi|432852515|ref|XP_004067286.1| PREDICTED: nucleolar RNA helicase 2-like [Oryzias latipes]
Length = 775
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 203/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S ISQ + L RG+S LF IQ P G D++ +ARTGTGKT +F IP++++
Sbjct: 184 FSNFRISQVTINKLKARGVSYLFDIQVKTFNPVYDGEDVLAQARTGTGKTFSFAIPLVER 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ K + RGR P LVL PTRELA QV K+F + + L C YGG+ + Q+ A+
Sbjct: 244 LQKEGGETTRGRPPKVLVLTPTRELAIQVAKDFKDVSKKLAIACFYGGSSYNPQLDAIRN 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ + LNLS+++ VVLDE DQML +GFAE VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNHKLNLSDLKHVVLDEVDQMLDMGFAEQVEEILSLSYKKDSDT 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT PPW+ + KY++ VDL+G Q+ A + +IA ++ ++I
Sbjct: 364 NPQTLLFSATCPPWVYEVAKKYMRPGCKHVDLIGKKTQRAATTVEHLAIACHWSQRAAVI 423
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A+ L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 424 GDVIQVYSGSHGRTIIFCETKKEANELSMNASIKQSSQTLHGDIPQKQREITLKGFRNGA 483
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 484 FEVLVATNVAARGLDIPEVDLV 505
>gi|402880638|ref|XP_003903905.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Papio anubis]
Length = 783
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
Length = 633
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 150/336 (44%), Positives = 206/336 (61%), Gaps = 15/336 (4%)
Query: 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
+D S +E D K IS I +L RGI+ LFPIQ + G+D+IG+ARTGTGK
Sbjct: 43 HDSGSMEEKGDFKKFRISSAIADSLKERGITYLFPIQAQTFDYVYDGQDVIGQARTGTGK 102
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
TL+F +PI +K+IK + R P LVLAPTRELA Q+ EF + SL +C+YGG
Sbjct: 103 TLSFALPITEKLIKKKRSDDKIRPPKVLVLAPTRELAIQITSEFKALSGSLKVVCIYGGV 162
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
P + Q L G+D V+GTPGR+ D I R L LS+++ VVLDE D+ML +GF + VE I
Sbjct: 163 PYAEQENHLRNGIDIVIGTPGRIKDHIDRKNLVLSKLKHVVLDEVDRMLDMGFCDIVEEI 222
Query: 270 L------ERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYS 322
L +R P Q+++FSATMP W +KY+K + VDL+G + + +
Sbjct: 223 LSHAYVKDRHP---QTLLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKV 279
Query: 323 IATSMYEKPSIIGQLITEHAKGG---KCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQ 379
I+ +E+ + IG L+ + GG + I+F+ TK++A+ LA + + LHGDI Q
Sbjct: 280 ISCPYHERAATIGDLVKVY--GGDHARTIIFSPTKKEANELALSSVLKQEVQVLHGDIQQ 337
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+QRE TL FR+G F L+ATDVAARGLD+P VDLV
Sbjct: 338 AQREVTLKGFREGNFPCLVATDVAARGLDIPEVDLV 373
>gi|380817914|gb|AFE80831.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|383414353|gb|AFH30390.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|384943498|gb|AFI35354.1| nucleolar RNA helicase 2 [Macaca mulatta]
Length = 783
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
Length = 780
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 202/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFP+Q GRD+I +ARTGTGKT +F IP+++K
Sbjct: 186 FSNFPISEETIKLLKARGVTFLFPVQAKTFHHVYSGRDLIAQARTGTGKTFSFAIPLIEK 245
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP +Q+ +
Sbjct: 246 LQGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLAVACFYGGTPYGNQIERMRN 305
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE IL+ +
Sbjct: 306 GIDILVGTPGRIKDHLENGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILKVAYKKDSED 365
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K VDL+G QK A + +I ++ ++I
Sbjct: 366 NPQTLLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEHLAIKCHWSQRAAVI 425
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 426 GDVIRVYSGHQGRTIVFCETKKEAQELSQNSSIKQDAQSLHGDIPQKQREITLKGFRNGD 485
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 486 FGVLVATNVAARGLDIPEVDLV 507
>gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
Length = 517
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 202/320 (63%), Gaps = 9/320 (2%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+ ++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +P
Sbjct: 6 QSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALP 65
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
I +++ E RGR P LVL PTRELA QV E AP L + VYGGT Q
Sbjct: 66 IAERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKE 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +
Sbjct: 123 ALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSAT+P W + L +Y+KNP+ ++++ D + ++ + + ++
Sbjct: 183 RQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSD 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ A + +VFT+TK + + +A + + + + LHGD+SQ +RER L AFR G
Sbjct: 239 LLY-VASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVR 297
Query: 396 ILIATDVAARGLDVPNVDLV 415
+L+ATDVAARGLD+P VDLV
Sbjct: 298 VLVATDVAARGLDIPQVDLV 317
>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 681
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 143/328 (43%), Positives = 203/328 (61%), Gaps = 9/328 (2%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E + I + L RGI LFPIQ + + G+D++GRARTG GKTLAF +
Sbjct: 103 EENPSLDNFRICDETKKNLQARGIHTLFPIQAMTFDKIVDGKDLMGRARTGMGKTLAFAL 162
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
P+++ +++ RGR P + +APTRELAKQV EF + PSL T+C+YGG Q
Sbjct: 163 PVIELLLQDKRPRARGRAPRVVCMAPTRELAKQVATEFELTGPSLSTVCIYGGASYQSQN 222
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
A GVD +VGT GRVID I R L L +F++LDEAD ML +GF EDV+ + + Q
Sbjct: 223 NAFRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFTAMDQ 282
Query: 276 -------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
RQ+++FSAT+P W++ + +KY+K V+LV DSD + + + +I
Sbjct: 283 VKNESTGKRQTLLFSATIPKWVKDVADKYMKKAEYVNLVKDSDDQASTDVQHIAIPCHWQ 342
Query: 329 EKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
+P+++ L+ +A K + I+F +TK+D + LA +C+ LHGDI+Q QRE T+
Sbjct: 343 GRPTLLANLLGVYAKKDSRTIIFAETKKDCNELAVHPEIKTDCQVLHGDIAQEQRETTMK 402
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
AFR+GR +LIATDVAARGLD+ NVDLV
Sbjct: 403 AFREGRLRLLIATDVAARGLDM-NVDLV 429
>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
Length = 783
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|384430474|ref|YP_005639834.1| DEAD/DEAH box helicase [Thermus thermophilus SG0.5JP17-16]
gi|333965942|gb|AEG32707.1| DEAD/DEAH box helicase domain protein [Thermus thermophilus
SG0.5JP17-16]
Length = 510
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 201/318 (63%), Gaps = 9/318 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVLAPTRELA QV E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLAPTRELALQVASELSSVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPFRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P W + L +Y+KNP+ ++++ D + ++ + + ++ L+
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSDLL 233
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
A + +VFT+TK + + +A + + + + +HGD+SQ +RER L AFR G +L
Sbjct: 234 Y-VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQGERERVLGAFRQGEVRVL 292
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+P VDLV
Sbjct: 293 VATDVAARGLDIPQVDLV 310
>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
Length = 711
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 212/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVAWFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
Length = 783
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 DPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 466
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/325 (46%), Positives = 211/325 (64%), Gaps = 26/325 (8%)
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII-----KFNEKH 168
L+ +GI+ P+Q + P + GRD+IGR+RTGTGKTLAFG+P L +++ K N +
Sbjct: 1 LSHKGITHFTPVQAKAMSPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQ 60
Query: 169 GR--------GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI--CVYGGTPISHQMRAL 218
GR GR P +VL PTRELA+QVE E L C +GG Q RAL
Sbjct: 61 GRDGSTRMRKGRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQARAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277
GVD +VGTPGRVID I R L+LSE VVLDEAD+ML++GFAEDVEVILE + +NR
Sbjct: 121 RQGVDVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKNR 180
Query: 278 ---QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD-SDQKLADGISLYSIATSMY--EKP 331
Q ++FSAT PPW++ + + Y ++ L++D+ G+ + ++A + +I K
Sbjct: 181 EKTQCLLFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPFGADAKK 240
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
+I+ +I A GK IVFT+TK++AD L + ++ K+ + + +HGDI Q QR+ TL+AFR
Sbjct: 241 AILEDII---ALFGKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLAAFR 297
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
G FN+L+ATDVAARG+D+ +VDLV
Sbjct: 298 AGAFNVLVATDVAARGIDIKDVDLV 322
>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
Length = 715
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 199/322 (61%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTREL QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELCNQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 420 FGVLVATNVAARGLDIPEVDLV 441
>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
Length = 715
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 300 DPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 359
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 360 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 419
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 420 FGVLVATNVAARGLDIPEVDLV 441
>gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB8]
Length = 510
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 201/318 (63%), Gaps = 9/318 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVL PTRELA QV E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P W + L +Y+KNP+ ++++ D + ++ + + ++ L+
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSDLL 233
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
A + +VFT+TK + + +A + + + + LHGD+SQ +RER L AFR G +L
Sbjct: 234 Y-VASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVL 292
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+P VDLV
Sbjct: 293 VATDVAARGLDIPQVDLV 310
>gi|224136846|ref|XP_002322430.1| predicted protein [Populus trichocarpa]
gi|222869426|gb|EEF06557.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/324 (44%), Positives = 206/324 (63%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + L +RGI LFPIQ E + G D++GRARTG GKTLAF +PIL+
Sbjct: 81 VTRFRISEPLREVLKKRGIEALFPIQARTFEDILNGGDLVGRARTGQGKTLAFVLPILES 140
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + K G GR P LVL PTRELA QV +F + A LD+ CVYGG Q
Sbjct: 141 LVNGLAKASRKTGYGRPPSVLVLLPTRELATQVFDDFKVYGGAMGLDSCCVYGGASYQPQ 200
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGR+ D I++ ++LS ++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 201 EFALKRGVDVVVGTPGRIKDHIEKGNIDLSLLKFRVLDEADEMLRMGFVEDVELILGKVK 260
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ +++K+LK T+DLVG+ K + + + S P
Sbjct: 261 DVNKVQTLLFSATLPGWVKQISSKFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTSAIP 320
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +A GG+ I+FT+ + A+ L+ + LHG+I QSQRE TLS FR
Sbjct: 321 QVIPDIIRCYASGGRTIIFTEKRESANELSGLLP---GARALHGEIQQSQREVTLSGFRS 377
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F L+AT+VAARGLD+ +V L+
Sbjct: 378 GKFLTLVATNVAARGLDINDVQLI 401
>gi|149511215|ref|XP_001519332.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ornithorhynchus
anatinus]
Length = 790
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 199/322 (61%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFPIQ +GRD++ +ARTGTGKT +F IP+ +K
Sbjct: 184 FSNFPISEQTIRLLKDRGVTYLFPIQVKTFHHVYEGRDVVAQARTGTGKTFSFAIPLTEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E+ RG P LVL PTRELA QV K+F + +L C YGGTP + Q+ +
Sbjct: 244 LQRKREEQKRGYPPKVLVLTPTRELANQVAKDFKDITRTLTVACFYGGTPYNGQIDLIRK 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L+++ VVLDE DQML +GFAEDVE I+
Sbjct: 304 GIDILVGTPGRIKDHLESGRLDLTKLYHVVLDEVDQMLDMGFAEDVEKIISGAYNRESED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K VDL+G QK A + +I ++ ++I
Sbjct: 364 NPQTLLFSATCPQWVYKVAKKYMKAKYEQVDLIGKLTQKAATTVEHLAIQCRENQRAAVI 423
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK+DA +A + LHGDI+QSQRE TL FR+G
Sbjct: 424 GDVIQVYSGNQGRAIVFCETKKDATEMALNSNIKQEAQALHGDIAQSQREITLKGFRNGV 483
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 484 FKVLVATNVAARGLDIPEVDLV 505
>gi|384440186|ref|YP_005654910.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
gi|359291319|gb|AEV16836.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
Length = 512
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/320 (45%), Positives = 203/320 (63%), Gaps = 14/320 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I AL+RRGI PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKAEIQEALSRRGIVAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+ +E RGR P +VL PTREL QV E AP L + VYGGT Q L
Sbjct: 61 QALEASSE---RGRPPRAIVLTPTRELCLQVASELAAVAPHLKVVAVYGGTGYGKQREEL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +K+ L+LS+V+ VLDEAD+MLS+GF E+VE IL+ PQ RQ
Sbjct: 118 ARGADVVVATPGRALDYLKQGVLDLSQVRIAVLDEADEMLSMGFEEEVEAILKATPQERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSIIGQL 337
+++FSAT+P W R L +Y++ P+ +++V + +G++ A + E+ S++ L
Sbjct: 178 TLLFSATLPSWARRLAERYMRAPVVINVVRE------EGVTYREEALLAPSERLSLLSDL 231
Query: 338 ITEHAKGGK-CIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+ + K K IVFT+TK + + +A + + + +HGD+SQ+ RER + AFRDG
Sbjct: 232 L--YVKSPKRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQADRERVMRAFRDGEVR 289
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+P VDLV
Sbjct: 290 ILVATDVAARGLDIPEVDLV 309
>gi|444725163|gb|ELW65741.1| Nucleolar RNA helicase 2 [Tupaia chinensis]
Length = 1339
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/359 (39%), Positives = 215/359 (59%), Gaps = 11/359 (3%)
Query: 64 AISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLF 123
A S P + A + + S + ++ + + EG S IS++ + L RG++ LF
Sbjct: 790 APSDPYSNSNEAASEESNSEAEQEISVE---QKEGA-FSNFPISEETIKLLKGRGVTFLF 845
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
PIQ G+D+I +ARTGTGKT +F IP+++K+ + RGR+P LVL PTR
Sbjct: 846 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGEMQDKKRGRSPQVLVLTPTR 905
Query: 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL 243
ELA QV ++F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+L
Sbjct: 906 ELASQVSRDFSDITKKLSVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDL 965
Query: 244 SEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYL 298
++++ VVLDE DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+
Sbjct: 966 TKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYM 1025
Query: 299 KNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRD 356
K VDL+G QK A + +I ++ ++IG +I ++ G+ I+F +TK++
Sbjct: 1026 KPSYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKE 1085
Query: 357 ADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
A L+ + + + LHGDI Q QRE TL FR+G F +L+AT+VAARGLD+P VDLV
Sbjct: 1086 AQELSQNTSIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLV 1144
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 131/202 (64%), Gaps = 7/202 (3%)
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 159 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 218
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 219 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 278
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 279 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 338
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 339 FKVLVATNVAARGLDIPEVDLV 360
>gi|410697698|gb|AFV76766.1| DNA/RNA helicase, superfamily II [Thermus oshimai JL-2]
Length = 508
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 141/319 (44%), Positives = 205/319 (64%), Gaps = 12/319 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + + +I+ AL +GI PIQ A L A+ GRD+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFANFPLKPEILEALKAKGIFAPTPIQAAALPIALDGRDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ +E RGR P LVL PTRELA QV +E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSSE---RGRPPRALVLTPTRELALQVAEEVASVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P+ RQ
Sbjct: 118 ARGADVVVATPGRALDYLEQGVLDLSRVEIAVLDEADEMLSMGFEEEVERLLSATPKERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIGQL 337
+++FSAT+P W R L+ +Y++ P+ +++V + +G++ A + ++ ++ L
Sbjct: 178 TLLFSATLPSWARKLSERYMRAPVLINVVRE------EGVTYQEEAILAPTDRLGLLSDL 231
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ A + IVFT TKR+ + +A + ++ + +HGD+SQS RER L AFR+G +
Sbjct: 232 LFVKAP-KRAIVFTSTKRETEEVAAGLLQAGHPARAIHGDLSQSDRERVLKAFREGEVRV 290
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLD+P VDLV
Sbjct: 291 LVATDVAARGLDIPEVDLV 309
>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
Length = 591
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 135/304 (44%), Positives = 198/304 (65%), Gaps = 6/304 (1%)
Query: 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176
+G +KLF IQ P ++G+D++G+ARTG GKTL+F +PI++ ++K ++GRGR P
Sbjct: 17 KGYTKLFEIQSRTFTPILEGKDILGKARTGEGKTLSFALPIIELLLK-EGRNGRGRAPRA 75
Query: 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI 236
L +APTRELA QV KEF + PSL + CVYGG P Q A+ G+D ++GTPGR+ D +
Sbjct: 76 LCMAPTRELAHQVGKEFADIGPSLASTCVYGGAPYMPQESAIRRGLDVIIGTPGRLKDHL 135
Query: 237 KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI----LERLPQNRQSMMFSATMPPWIRS 292
+ L L+++++++LDEAD+ML GF E ++ I + + Q ++FSATMP +I S
Sbjct: 136 DKGTLKLTDIKYLILDEADRMLEQGFVEAIDEIQKMTIAQSGGKPQMILFSATMPDFILS 195
Query: 293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG-GKCIVFT 351
Y+ N +TVD VG S + + G+ +I E+ ++I ++ ++ G+ I+FT
Sbjct: 196 TVKNYMPNHVTVDTVGSSRNRTSKGVDHLAIKCPWTERRAVIADVVQMYSGAHGRTIIFT 255
Query: 352 QTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411
QTK+DA+ LA + LHGDI Q QRE +L AFRDG+ L+ATDVAARGLD+P
Sbjct: 256 QTKKDANELALETDLRQEVQVLHGDIPQKQREMSLQAFRDGKVRCLVATDVAARGLDIPE 315
Query: 412 VDLV 415
VDLV
Sbjct: 316 VDLV 319
>gi|224122544|ref|XP_002318863.1| predicted protein [Populus trichocarpa]
gi|222859536|gb|EEE97083.1| predicted protein [Populus trichocarpa]
Length = 652
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 210/324 (64%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + AL +RGI LFPIQ E + G D++GRARTG GKTLAF +PIL+
Sbjct: 65 VTRFRISEPLREALKKRGIEALFPIQARTFEDILNGCDLVGRARTGQGKTLAFVLPILES 124
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + K G GR P LVL PTRELA QV ++F + A L++ CVYGG Q
Sbjct: 125 LVNGPAKASRKTGYGRPPSVLVLLPTRELATQVFEDFKVYGGAVGLNSCCVYGGASYQPQ 184
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGR+ D I++ ++LS ++F VLDE+D+ML +GF EDVE+IL ++
Sbjct: 185 EFALKRGVDIVVGTPGRIKDHIEKGNIDLSLLKFRVLDESDEMLRMGFVEDVELILGKVE 244
Query: 275 QNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
R Q+++FSAT+P W++++++++LK T+DLVG+ K + + + S P
Sbjct: 245 DVRKVQTLLFSATLPDWVKNISSRFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTAAMP 304
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I+ + GG+ I+FT+ + A+ LA + LHG+I QS+RE TLS FR
Sbjct: 305 QVIPDVISCYGSGGRTIIFTEKRESANELAGLLP---GARALHGEIQQSKREVTLSGFRS 361
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F L+AT+VAARGLD+ +V L+
Sbjct: 362 GKFLTLVATNVAARGLDINDVQLI 385
>gi|384247126|gb|EIE20614.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 698
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 202/324 (62%), Gaps = 7/324 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S + A L +GI LF IQ L + G D++GRARTG GKTLAF +PI+
Sbjct: 104 LAVDNFRLSDKVKALLREKGIEALFSIQAHTLNHLLDGFDLVGRARTGQGKTLAFVLPIV 163
Query: 159 DKIIKFN---EKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
++++ N + +GR P +VLAPTRELAKQV +F A +L T+C+YGG P+S
Sbjct: 164 ERLLAHNISATRRQQGRTPRVIVLAPTRELAKQVHADFENIGRAANLSTVCLYGGAPMSP 223
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q + L G D VVGTPGRV D ++R L L ++ F VLDE D+ML++GF EDVE IL
Sbjct: 224 QEQILRRGCDVVVGTPGRVKDHLERGNLKLQDLMFRVLDECDEMLNMGFVEDVEKILNAG 283
Query: 274 PQNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ Q+++FSAT+P W++ +T ++L+ N VDLVG K + + + ++
Sbjct: 284 GDIKVQTLLFSATLPSWVKDITRRFLQPNHKLVDLVGTDKMKASTSVKHMVLPCHWSQRA 343
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
++ L+ + G+ I+F TK+D + L ++ + +PLHGDI Q QRE TL AFR
Sbjct: 344 TVAADLVRCYGALGRTIIFCDTKKDCNELVASLGEGMRAQPLHGDIPQQQREVTLKAFRA 403
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
+F+IL+ATDVAARGLD+ V+LV
Sbjct: 404 AKFDILVATDVAARGLDINGVELV 427
>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
[Ciona intestinalis]
Length = 672
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 208/337 (61%), Gaps = 10/337 (2%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V DD S + D + I++ L ++G++ LFPIQ G+D++ +ARTGT
Sbjct: 79 VDIDDQSPEALGDFNNFRITEQTKVLLKKKGVAYLFPIQIQSFNHVYDGKDVVAQARTGT 138
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
GKTL+F IP+++K+I N GR P LV+APTRELA QV K+F + + L ++C+YG
Sbjct: 139 GKTLSFAIPLVEKLI-MNRCKDYGRPPKVLVMAPTRELAIQVRKDFQDISQGLSSVCIYG 197
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
GTP Q R++ GVD VVGTPGR++D +++ L L V+ VVLDE DQML +GFA VE
Sbjct: 198 GTPYFQQERSMRGGVDIVVGTPGRIMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVE 257
Query: 268 VIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT--VDLVGDSDQKLADGISL 320
IL E Q+++FSAT PPW+R+ + KY++ T VD +G S + A +
Sbjct: 258 EILGYAYTEEREGPPQTLLFSATCPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEH 317
Query: 321 YSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDIS 378
+I ++ IG ++ ++ + G+ ++FT TK+DA+ L A + + LHGDI
Sbjct: 318 LAIRCQYSDRAECIGNVVQMYSGQHGRAMIFTDTKKDANELVVCEALQQQKAQVLHGDIE 377
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
Q QRE TL A+RDG L+AT+VAARGLD+P +DLV
Sbjct: 378 QRQREITLKAYRDGTVRCLVATNVAARGLDIPEIDLV 414
>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
Length = 655
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 143/330 (43%), Positives = 204/330 (61%), Gaps = 9/330 (2%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+K+EG D I+ V L R + KLFP+Q + + G D+I +ARTGTGKTLAF
Sbjct: 86 TKEEG-DFENFRITAQTVTKLKARNVVKLFPVQYSTFDFVYDGWDVITQARTGTGKTLAF 144
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
IP+++++ K RGR P+ +VLAPTRELA QV ++F + L + CVYGGTP
Sbjct: 145 SIPLVERLQKDGVSIKRGRAPVVIVLAPTRELAIQVYEDFKSISTKLTSFCVYGGTPYPP 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q A++ G+D +VGTPGR+ D ++ LNLSE++ VVLDE D+ML +G E V+ ILE
Sbjct: 205 QNDAINRGLDILVGTPGRIQDHVRSGRLNLSELRHVVLDEVDRMLEMGMVEQVDEILEAA 264
Query: 274 ------PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
QN Q++ FSAT+P W+ KY+K P VD++G + A + +I
Sbjct: 265 YKKDDKSQNPQTLFFSATLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEHLAIRCG 324
Query: 327 MYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
+ +I +IT ++ + G+ +VF +TK++A++L + LHGDI Q+QRE T
Sbjct: 325 WQARAPVIADIITMYSGQHGRAMVFCETKKEANQLVLEGVLKQEAQVLHGDIPQAQRELT 384
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLV 415
L +FRDG +L+ATDVAARGLD+P VDLV
Sbjct: 385 LKSFRDGNIQVLVATDVAARGLDIPEVDLV 414
>gi|395820929|ref|XP_003783808.1| PREDICTED: nucleolar RNA helicase 2 [Otolemur garnettii]
Length = 769
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 198/322 (61%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S I + V RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 184 FSHFKIYNNTVNLFTGRGVTFLFPIQARTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR+P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 244 LQGELQDRKRGRSPQVLVLAPTRELANQVSKDFSDITKKLAVACFYGGTPYGGQIERMRN 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEDILSVAYKKDSED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K VDL+G QK A + +I ++ ++I
Sbjct: 364 NPQTLLFSATCPHWVFNVAKKYMKPTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 423
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 424 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTAIKQDAQSLHGDIPQKQREITLKGFRNGA 483
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 484 FGVLVATNVAARGLDIPEVDLV 505
>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
Length = 602
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 195/322 (60%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +SQ+ + L R + LFP+Q +P G+D+I +ARTGTGKT +F IP+ +K
Sbjct: 39 FSNFPLSQNTINLLKARDVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEK 98
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR+P LVL PTRELA QV ++F L C YGG P Q L
Sbjct: 99 LQSVSQDERRGRSPKVLVLVPTRELAIQVARDFKNLTRKLSVACFYGGAPYKAQFDLLKS 158
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ + L+LS V+ VVLDE D ML +GFAE VE IL +
Sbjct: 159 GIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGSEN 218
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDL+G Q+ A + +I ++ ++
Sbjct: 219 NPQTLLFSATCPRWVYDVAKKYMKDEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRVEVL 278
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A+ LA A + LHGDI Q QRE TL FR+G
Sbjct: 279 GDIIQVYSGSHGRTIVFCETKKEANELALNSALKQEAQSLHGDIPQKQREITLKGFRNGV 338
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +LIAT+VAARGLD+P VDLV
Sbjct: 339 FEVLIATNVAARGLDIPEVDLV 360
>gi|194205947|ref|XP_001917975.1| PREDICTED: nucleolar RNA helicase 2 [Equus caballus]
Length = 785
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 203/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 250 LQRELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITKKLAVACFYGGTPYGGQIERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 370 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAMTVEHLAIKCHWTQRAAVI 429
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ + I+F +TK++A L+ +++ + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGYQRRTIIFCETKKEAQELSQSVSIKLDAQSLHGDIPQKQREITLKGFRNGD 489
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 490 FGVLVATNVAARGLDIPEVDLV 511
>gi|386361220|ref|YP_006059465.1| DNA/RNA helicase [Thermus thermophilus JL-18]
gi|383510247|gb|AFH39679.1| DNA/RNA helicase, superfamily II [Thermus thermophilus JL-18]
Length = 510
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 137/318 (43%), Positives = 201/318 (63%), Gaps = 9/318 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVLAPTRELA QV E A L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLAPTRELALQVASELASVATHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSAT+P W + L +Y+KNP+ ++++ D + ++ + + ++ L+
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE----EAVPAPVRGRLEVLSDLL 233
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
A + +VFT+TK + + +A + + + + +HGD+SQ +RER L AFR G +L
Sbjct: 234 Y-VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHGDLSQGERERVLGAFRQGEVRVL 292
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+P VDLV
Sbjct: 293 VATDVAARGLDIPQVDLV 310
>gi|320451062|ref|YP_004203158.1| DEAD/DEAH box helicase [Thermus scotoductus SA-01]
gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
Length = 521
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 142/319 (44%), Positives = 203/319 (63%), Gaps = 12/319 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I AL RRGI+ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKDEIKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+ E RGR P LVL PTRELA QV E AP L + VYGGT Q L
Sbjct: 61 QGLEASKE---RGRLPRALVLTPTRELALQVSGELQAVAPHLKVVTVYGGTGYGKQKEEL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +++ AL+LS+V+ VLDEAD+MLS+GF E+VE IL P+ RQ
Sbjct: 118 TRGCDVVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLSMGFEEEVEAILSATPKERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIGQL 337
+++FSAT+P W R L +Y+K+P+ +++V + +GI+ A + ++ S++ +
Sbjct: 178 TLLFSATLPSWARKLAERYMKSPVVINVVRE------EGITYQEEAIPAPGDRLSLLSDV 231
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ A + IVFT+TK + + +A + + + +HGD+SQ+ RER + AFR+G +
Sbjct: 232 LFVKAP-KRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAFREGEVRV 290
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLD+P VDLV
Sbjct: 291 LVATDVAARGLDIPEVDLV 309
>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
Length = 765
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 161 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 220
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 221 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 280
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 281 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 340
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 341 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 400
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ ++ + + LHGDI Q QRE TL FR+G
Sbjct: 401 GDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGD 460
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 461 FGVLVATNVAARGLDIPEVDLV 482
>gi|363735177|ref|XP_421574.3| PREDICTED: nucleolar RNA helicase 2-like [Gallus gallus]
Length = 760
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 142/322 (44%), Positives = 196/322 (60%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +S + L RG+ LFP+Q +P G+D+I +ARTGTGKT +F IP+ +K
Sbjct: 197 FSNFPLSPSTINLLKARGVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEK 256
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR+P LVL PTRELA QV K+F L C YGGTP Q L
Sbjct: 257 LQSVSQDEKRGRSPKVLVLVPTRELAIQVAKDFKNLTRKLSVACFYGGTPYKAQFDLLKN 316
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL----ERLPQN 276
G+D +VGTPGR+ D I+ + L+LS V+ VVLDE D ML +GFAE VE IL ++ +N
Sbjct: 317 GIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGSEN 376
Query: 277 R-QSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
Q+++FSAT P W+ + KY+K VDL+G Q+ A + +I ++ ++
Sbjct: 377 SPQTLLFSATCPRWVYDVAKKYMKGEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRAEVL 436
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ IVF +TK++A+ LA A + LHGDI Q QRE TL FR+G
Sbjct: 437 GDIIQVYSGSHGRTIVFCETKKEANELALNSALKQEAQSLHGDIPQKQREVTLKGFRNGV 496
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +LIAT+VAARGLD+P VDLV
Sbjct: 497 FEVLIATNVAARGLDIPEVDLV 518
>gi|449530205|ref|XP_004172086.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Cucumis
sativus]
Length = 696
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 146/324 (45%), Positives = 210/324 (64%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + A L +GI+ LFPIQ + G D++GRARTG GKTLAF +PIL+
Sbjct: 107 VTQFRISEPLKAKLREKGITSLFPIQATTFDTVYDGSDLVGRARTGQGKTLAFVLPILES 166
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQV--EKEFHESAPSLDTICVYGGTPISHQ 214
++ K + G GR+P +VL PTRELA QV + +F+ LD+ C+ GG Q
Sbjct: 167 LVNGPYKSSRVTGYGRSPSVIVLLPTRELADQVFEDFKFYGRTLGLDSCCLCGGLQYGPQ 226
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGRV D I RN ++L ++F VLDEAD+ML++GF +DVE IL ++
Sbjct: 227 EIALKRGVDIVVGTPGRVKDHINRNNIDLRSLKFRVLDEADEMLNMGFVDDVEFILGKVA 286
Query: 275 Q-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
N+ Q+++FSAT+P W++++T+++LK + TVDLVG+ K + + I S E+
Sbjct: 287 DVNKVQTLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMKASKDVRHIVIPCSDTERS 346
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A LA + PLHGDI QSQR T+S FR
Sbjct: 347 RLIPDIIRCYSSGGRTIIFTETKESASELAGLLP---GARPLHGDIQQSQRSVTISGFRS 403
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F IL+AT+VAARGLD+ +V L+
Sbjct: 404 GKFLILVATNVAARGLDINDVQLI 427
>gi|387018184|gb|AFJ51210.1| Nucleolar RNA helicase 2-like [Crotalus adamanteus]
Length = 701
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 206/322 (63%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ DIS+ V L RG+S LFP+Q P ++G+D+I +ARTGTGKT +F IP+++K
Sbjct: 132 FANFDISKATVDLLKARGVSYLFPVQVKTFMPILEGKDVIAQARTGTGKTFSFAIPLIEK 191
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + ++ RGR+P LVL PTRELA QV ++F + L C YGGT + Q+ +
Sbjct: 192 LDRDPQERKRGRSPKVLVLTPTRELAMQVARDFKDITKKLTVACFYGGTAYNGQLDLIRN 251
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L++S+++ VVLDE DQML +GFAE VE IL +
Sbjct: 252 GIDILVGTPGRIKDHLQNNKLDISKLRHVVLDEVDQMLDMGFAEQVEEILVNSYKKDSED 311
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ DL+G +K A + +I ++ ++I
Sbjct: 312 NPQTLLFSATCPQWVYNVAKKYMKSKYEQFDLIGKKTKKTATTVEHLAIECHWSQRAAVI 371
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A LA + + + LHGDI Q QRE TL FR+G
Sbjct: 372 GDVIQVYSGSHGRTIIFCETKKEATELALNASIKQDAQSLHGDIPQKQREVTLKGFRNGA 431
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 432 FEVLVATNVAARGLDIPEVDLV 453
>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
Length = 794
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 250 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 370 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 429
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ ++ + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGD 489
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 490 FGVLVATNVAARGLDIPEVDLV 511
>gi|410975245|ref|XP_003994044.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Felis catus]
gi|410975247|ref|XP_003994045.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Felis catus]
Length = 712
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 202/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 117 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 177 LQGELQDRKRGRAPRVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 237 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 296
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+++ VDL+G QK A + +I ++ ++I
Sbjct: 297 NPQTLLFSATCPHWVYNVAKKYMRSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 356
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ ++ + + LHGDI Q QRE TL FR+G
Sbjct: 357 GDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLHGDIPQKQREITLKGFRNGD 416
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 417 FGVLVATNVAARGLDIPEVDLV 438
>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
Length = 713
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 220/357 (61%), Gaps = 14/357 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+SKL IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 131 VSKLRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 190
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
+I K + K G GR P LVL PTRELA +V +F + A L + C+YGG P + Q
Sbjct: 191 LINGPTKSSRKTGYGRTPSVLVLLPTRELACRVHADFEVYGGAMGLSSCCLYGGAPYNTQ 250
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L GVD V+GTPGRV D I+R ++LS+++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 251 EIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVE 310
Query: 275 Q-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
N+ Q+++FSAT+P W++ + ++LK + T DLVG++ K + + + S +
Sbjct: 311 NVNKVQTLLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSAPARS 370
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A +LA + LHGDI Q+QRE TL FR
Sbjct: 371 QLIPDIIRCYSSGGRTIIFTETKESASQLAGLLP---GARALHGDIQQAQREVTLFGFRS 427
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLD 446
G+F L+AT+VAARGLD+ +V L+ R+ ++ S + R G + V + D
Sbjct: 428 GKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAGTLYD 484
>gi|297797185|ref|XP_002866477.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
gi|297312312|gb|EFH42736.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
Length = 669
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 211/337 (62%), Gaps = 12/337 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +S IS + L +GI LFPIQ + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSNFRISAPLREKLKAKGIEALFPIQATTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G R P LVL PTRELAKQV +F SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKNKRKMGYARAPSVLVLLPTRELAKQVAADFDAYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG + Q L GVD VVGTPGR+ D I+R ++LS +QF VLDEAD+ML +G
Sbjct: 205 SCCIYGGDSYTAQENKLRRGVDIVVGTPGRIKDHIERQNIDLSHLQFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ P Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDPTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
Query: 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDIS 378
+I + +I +I+ ++ GG+ I+F + K + L+ +A S LHG+I
Sbjct: 325 RHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAEKKNEVSELSGLLAGS---RALHGEIP 381
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
Q+QRE TL+ FR+G+F+ L+AT+VAARGLD+ +V L+
Sbjct: 382 QAQREVTLAGFRNGKFSTLVATNVAARGLDINDVQLI 418
>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
Length = 693
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/321 (44%), Positives = 205/321 (63%), Gaps = 12/321 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF- 164
++ + L ++G LF IQ LE A+ GRD++GRARTG GKTLAF +PI++ + K
Sbjct: 88 LTDPVKTTLRKKGYDALFQIQAETLEIALGGRDVVGRARTGCGKTLAFVLPIIELMAKMS 147
Query: 165 ----NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRAL 218
N + +GR P+C+VLAPTRELAKQV +F S ++CVYGG P Q L
Sbjct: 148 PMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSYGFKSLCVYGGAPYREQEMGL 207
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD V+GTPGR+ D ++R L +++++F VLDEAD+ML++GF +DVE IL + + Q
Sbjct: 208 RSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDEADEMLNMGFVDDVETIL-KSSGDVQ 266
Query: 279 SMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
+++FSAT+P W++ ++ ++LK N TVDLVGD QK + + + ++ ++ +
Sbjct: 267 TLLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKASGAVQHMLLPCQWSDRVDLVCDV 326
Query: 338 ITEHAK-GGKCIVFTQTKRDADRLAHAMAKSY--NCEPLHGDISQSQRERTLSAFRDGRF 394
I A GG+ IVF TKRD L + K + LHGD+SQSQRE LS FR+ +F
Sbjct: 327 IRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQSQREVVLSLFREDKF 386
Query: 395 NILIATDVAARGLDVPNVDLV 415
+L+ATDVAARGLD+ V+LV
Sbjct: 387 QVLVATDVAARGLDITGVELV 407
>gi|449451928|ref|XP_004143712.1| PREDICTED: uncharacterized protein LOC101209696 [Cucumis sativus]
Length = 1247
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/324 (44%), Positives = 209/324 (64%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + A L +GI+ LFPIQ + G D++GRARTG GKTLAF +PIL+
Sbjct: 658 VTQFRISEPLKAKLREKGITSLFPIQATTFDTVYDGSDLVGRARTGQGKTLAFVLPILES 717
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQV--EKEFHESAPSLDTICVYGGTPISHQ 214
++ K + G GR+P +VL PTRELA QV + +F+ LD+ C+ GG Q
Sbjct: 718 LVNGPYKSSRVTGYGRSPSVIVLLPTRELADQVFEDFKFYGRTLGLDSCCLCGGLQYGPQ 777
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGRV D I RN ++L ++F VLDEAD+ML++GF +DVE IL ++
Sbjct: 778 EIALKRGVDIVVGTPGRVKDHINRNNIDLRSLKFRVLDEADEMLNMGFVDDVEFILGKVA 837
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++++T+++LK + TVDLVG+ K + + I S E+
Sbjct: 838 DVNKVQTLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMKASKDVRHIVIPCSDTERS 897
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A LA + + PLHGDI QSQR T+S FR
Sbjct: 898 RLIPDIIRCYSSGGRTIIFTETKESASELAGLLPGA---RPLHGDIQQSQRSVTISGFRS 954
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F IL+AT+VAARGLD+ +V L+
Sbjct: 955 GKFLILVATNVAARGLDINDVQLI 978
>gi|425733846|ref|ZP_18852166.1| DNA/RNA helicase [Brevibacterium casei S18]
gi|425482286|gb|EKU49443.1| DNA/RNA helicase [Brevibacterium casei S18]
Length = 503
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 217/360 (60%), Gaps = 12/360 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D ++L +S IVA+LA GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L
Sbjct: 7 DFAELGVSGPIVASLAAAGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQ 66
Query: 160 KIIKFNE-----KHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPIS 212
++ +E G R P LV+ PTRELAKQV ++ S S+D + +YGG
Sbjct: 67 RVTGKDEPGGETAEGDTRLPQALVVVPTRELAKQVAQDLVTASSQRSIDVVTIYGGKEFE 126
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GVD VVGTPGR++DL R L L++V+ VVLDEAD+ML +GF DVE I+
Sbjct: 127 PQINALKAGVDVVVGTPGRLLDLYGRKVLRLNKVRTVVLDEADEMLDLGFLPDVERIIAA 186
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMYEKP 331
+P NRQ+M+FSATMP + +L +Y+ P + + D L + Y +K
Sbjct: 187 VPANRQTMLFSATMPGAVITLARRYMNRPTHIRAHDNEDLSLTGKNTTQYVYRAHAMDKS 246
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
++ +L+ + G+ I+FT+TKR AD+LA ++ + + LHGD+ Q+QRE+ L +FR
Sbjct: 247 ELVARLLQAEGR-GRTIIFTRTKRTADKLAAELSDRGFAVRALHGDLGQAQREKALKSFR 305
Query: 391 DGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDAD 448
DG ++L+ATDVAARG+D+ +V V E ++ + R G S V ++D D
Sbjct: 306 DGTVDVLVATDVAARGIDIDDVTHVVNFQSPEDEKTYVHRIGRTGRAGNSGVAVTLVDWD 365
>gi|432106715|gb|ELK32367.1| Nucleolar RNA helicase 2 [Myotis davidii]
Length = 799
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 198/322 (61%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 205 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 264
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ RGR P LVL PTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 265 LLAELHDRKRGRAPQVLVLTPTRELANQVSRDFSDITKKLSVACFYGGTPYGGQIERIRN 324
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 325 GIDILVGTPGRIKDHLQNGKLELTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 384
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K VDL+G QK A + +I ++ ++I
Sbjct: 385 NPQTLLFSATCPHWVYNVAKKYMKPTYEQVDLIGKRTQKAAITVEHLAIKCHWTQRAAVI 444
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 445 GDVIRVYSGFHGRTIIFCETKKEAQELSQNTSMKQDAQSLHGDIPQKQREITLKGFRNGD 504
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +++AT+VAARGLD+P VDLV
Sbjct: 505 FGVMVATNVAARGLDIPEVDLV 526
>gi|407954645|dbj|BAM48570.1| malignant cell derived RNA helicase [Homo sapiens]
Length = 731
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 141/345 (40%), Positives = 210/345 (60%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQLKTFGHVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ V LVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVALVGKMTQKAATPVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDNPEVDL----VIQSSPPQDVESYIHRSGRT 479
>gi|345798963|ref|XP_851746.2| PREDICTED: nucleolar RNA helicase 2 [Canis lupus familiaris]
Length = 785
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP++ K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIVK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 250 LQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 370 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 429
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ ++ + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLHGDIPQKQREITLKGFRNGD 489
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 490 FGVLVATNVAARGLDIPEVDLV 511
>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
Length = 513
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/319 (43%), Positives = 201/319 (63%), Gaps = 12/319 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I AL RGI+ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKDEIKEALYGRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
++ RGR P LVL PTRELA QV E AP L + VYGGT Q L
Sbjct: 61 QRL---EASRQRGRKPRALVLTPTRELALQVASEVAALAPHLKVVPVYGGTGYGKQKEEL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +++ L+LSEV+ VLDEAD+MLS+GF E+VE IL P +RQ
Sbjct: 118 QKGADVVVATPGRALDYLRQGVLDLSEVEIAVLDEADEMLSMGFEEEVEAILAATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIGQL 337
+++FSAT+P W R L +Y+K+P+ +++V + +G++ A + ++ +++ L
Sbjct: 178 TLLFSATLPTWARRLAERYMKSPVVINVVKE------EGVTYQEEAILAPTDRLALLSDL 231
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ A + IVFT+TK + + +A + + + +HGD+SQ+ RER + AFR+G +
Sbjct: 232 LYVKAP-KRAIVFTKTKAETEEVATGLLRLGHAARAIHGDLSQADRERVMRAFREGEVRV 290
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLD+P VDLV
Sbjct: 291 LVATDVAARGLDIPEVDLV 309
>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 690
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 146/324 (45%), Positives = 204/324 (62%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISK IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 107 ISKYRISESLREKLKSKGIQSLFPIQAMTFDDILDGSDLVGRARTGQGKTLAFVLPILES 166
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQ 214
I K + K G GR P LVL PTRELA QV +F SL + C+YGG Q
Sbjct: 167 ITNGHAKESRKTGYGRPPSVLVLLPTRELASQVFDDFKVYGESLGLTSCCLYGGASYHPQ 226
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+L GVD VVGTPGRV D I+R +NLS ++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 227 EMSLKRGVDIVVGTPGRVKDHIERGNINLSYLKFRVLDEADEMLRMGFVEDVELILGKVE 286
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ +++++LK + T+DLVG+ K + + + S P
Sbjct: 287 DVSKVQTLLFSATLPEWVKQISSRFLKASKKTIDLVGNEKMKASTNVRHIILPCSASAIP 346
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+ + A+ LA + + LHG+I QSQRE TLS FR
Sbjct: 347 QVIPDIIRCYSSGGRTIIFTEKRESANELAGLL---HGARALHGEIQQSQREVTLSGFRS 403
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F L+AT+VAARGLD+ +V L+
Sbjct: 404 GKFLTLVATNVAARGLDINDVQLI 427
>gi|344275097|ref|XP_003409350.1| PREDICTED: nucleolar RNA helicase 2 [Loxodonta africana]
Length = 787
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 198/322 (61%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEATVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q +
Sbjct: 250 LHGELQDKKRGRPPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQFERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNAKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I + ++I
Sbjct: 370 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTHRATVI 429
Query: 335 GQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ + + + LHGDI Q QRE TL FR+G
Sbjct: 430 GDVIRVYSGYHGRTIIFCETKKEAQELSQNASIKQDAQSLHGDIPQKQREITLKGFRNGA 489
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 490 FGVLVATNVAARGLDIPEVDLV 511
>gi|359490274|ref|XP_002269873.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis
vinifera]
Length = 711
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 144/324 (44%), Positives = 202/324 (62%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 121 LSNFRISEPLREKLKSKGIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILES 180
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
+I + + K G GR P LVL PTRELA QV +F + A L + C+YGG P Q
Sbjct: 181 LINGPNRGSRKTGYGRPPCVLVLLPTRELATQVYADFDVYGGAIGLTSCCLYGGAPYQAQ 240
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L GVD VVGTPGR+ D I+R ++ S ++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 241 EIKLKRGVDIVVGTPGRIKDHIERGNIDFSSLKFRVLDEADEMLRMGFVEDVELILGKVE 300
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ +++++LK L T DLVG+ K + + + S +
Sbjct: 301 DVSKVQTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVLPCSSSARS 360
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A LA + LHGDI QSQRE TLS FR
Sbjct: 361 QVIPDVIRCYSSGGRTIIFTETKDSASELAGLLP---GARALHGDIQQSQREVTLSGFRS 417
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F L+AT+VAARGLD+ +V L+
Sbjct: 418 GKFMTLVATNVAARGLDINDVQLI 441
>gi|356535937|ref|XP_003536498.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 697
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 148/333 (44%), Positives = 209/333 (62%), Gaps = 12/333 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+ KD+ IS IS+ + L +GI LFPIQ + + G D++GRARTG GKTL
Sbjct: 111 EEKKDDPNAISNFRISEPLREKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTL 170
Query: 152 AFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICV 205
AF +PIL+ +I K K G GR P LVL PTRELA QV +F + A L + C+
Sbjct: 171 AFVLPILESLINGPAKSARKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCL 230
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG P Q L GVD V+GTPGRV D I++ ++LS+++F VLDEAD+ML +GF ED
Sbjct: 231 YGGAPYQGQELKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVED 290
Query: 266 VEVILERLPQ-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYS 322
VE+IL ++ N+ Q+++FSAT+P W++ + K+LK + T DLVG++ K + +
Sbjct: 291 VEMILGKVENVNKVQTLLFSATLPDWVKQIALKFLKPDKKTADLVGNTKMKASTNVRHIV 350
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQR 382
+ + + +I +I ++ GG+ IVFT+TK A +LA + + LHGDI QS R
Sbjct: 351 LPCTSSARAQLIPDIIRCYSSGGRTIVFTETKECASQLAGILN---GAKALHGDIQQSTR 407
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
E TLS FR G+F L+AT+VAARGLD+ +V L+
Sbjct: 408 EVTLSGFRSGKFMTLVATNVAARGLDINDVQLI 440
>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
Length = 628
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 207/328 (63%), Gaps = 8/328 (2%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
K EG S D+S+ V L RG++ LFP+Q + +G+D+I +ARTGTGKT +F
Sbjct: 45 KKEGA-FSNFDLSKATVDLLKARGVTYLFPVQVKTFKHISEGKDVIAQARTGTGKTFSFA 103
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
IP+++K+ + +++ RGR P LVLAPTRELA QV ++F + L C YGGT + Q
Sbjct: 104 IPLIEKLQRDSQERKRGRTPKVLVLAPTRELAMQVARDFKDVTRKLTVACFYGGTAYNGQ 163
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ + G+D +VGTPGR+ D ++ L +S ++ VVLDE DQML +GFA+ VE IL+
Sbjct: 164 LDLIRNGIDILVGTPGRIKDHLENGKLEISSLKHVVLDEVDQMLDMGFADQVEDILKYAY 223
Query: 275 Q-----NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMY 328
+ N Q+++FSAT P W+ + KY+K+ +DL+G +K A + +I
Sbjct: 224 KKDSEDNPQTLLFSATCPHWVYDVAKKYMKSKYEQIDLIGKKTKKTAMTVEHLAIECHWS 283
Query: 329 EKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
++ ++IG ++ ++ G+ I+F +TK++A LA + + + LHGDI Q QRE TL
Sbjct: 284 QRAAVIGDVLQVYSGSHGRTIIFCETKKEATELALNASIKQDAQSLHGDIPQKQREVTLK 343
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
FR+G F +L+AT+VAARGLD+P VDLV
Sbjct: 344 GFRNGAFGVLVATNVAARGLDIPEVDLV 371
>gi|149511217|ref|XP_001519340.1| PREDICTED: nucleolar RNA helicase 2 [Ornithorhynchus anatinus]
Length = 757
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 145/340 (42%), Positives = 206/340 (60%), Gaps = 8/340 (2%)
Query: 83 AVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
A D+ + + + EG S IS++ + L RG++ LFPIQ G+D+I +
Sbjct: 157 AADEPQQHLTAEQKEGA-FSNFSISKETIQLLKARGVTYLFPIQAKTFGHVSSGKDVIAQ 215
Query: 143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT 202
ARTGTGKT +F IP+++K+ + + RGR P LVL PTRELA QV ++F + L
Sbjct: 216 ARTGTGKTFSFAIPLIEKLQRDLKDQKRGRLPKVLVLTPTRELAIQVGRDFSDITKKLTV 275
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
C YGGT + Q+ + G+D +VGTPGR+ D I+ LNL+ +Q VVLDE DQML +GF
Sbjct: 276 ACFYGGTAYNGQINHIRNGIDILVGTPGRIRDHIQSGRLNLTSLQHVVLDEVDQMLDMGF 335
Query: 263 AEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLAD 316
AE VE IL + N Q+++FSAT P W+ + KY+K VDL+G QK A
Sbjct: 336 AEQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKVKYEQVDLIGKKTQKTAM 395
Query: 317 GISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
+ +I ++ ++IG +I ++ G+ IVF +TK++A L+ + A + + LHG
Sbjct: 396 TVEHLAIKCHWAQRAAVIGTVIQVYSGTHGRTIVFCRTKKEATELSLSPAIKQDAQSLHG 455
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
DI Q QRE TL FR G F +L+AT+VAARGLD+P VDLV
Sbjct: 456 DIPQKQREITLKGFRSGAFGVLVATNVAARGLDIPEVDLV 495
>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
Length = 685
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 206/324 (63%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 106 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 165
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 166 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 225
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 226 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 285
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK+ TVDLVGD K + + ++ + +
Sbjct: 286 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARA 345
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 346 QVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRS 402
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F +L+AT+VAARGLD+ +V L+
Sbjct: 403 GKFLVLVATNVAARGLDINDVQLI 426
>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase [Meiothermus ruber DSM 1279]
gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
Length = 556
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 212/345 (61%), Gaps = 15/345 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ S + ++ A+ +G + PIQ A + A++G+D++G+ARTGTGKTLAFGIPI
Sbjct: 1 MEFSAFTLRPEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P L+L PTRELA QV KE AP L +YGGT Q AL
Sbjct: 61 NRLDAARE---RGRAPRALILTPTRELALQVAKELEWLAPHLTITPIYGGTGYGKQAEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR ID +++ L+LS ++ VLDEAD+MLS+GF E VE +LE P RQ
Sbjct: 118 KRGTDVVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA--TSMYEKPSIIGQ 336
+++FSAT+P W R L+ +Y K + ++++ D + IS +A ++ + S++
Sbjct: 178 TLLFSATLPTWARRLSERYQKAAIHINVIKD------EAISYEEVAIQAPIHNRLSVLSD 231
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ +A + IVFT TK + + LA + +++++ P+HGD+ Q RER + FR G +
Sbjct: 232 LLFAYAP-ERTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVS 290
Query: 396 ILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
+L+ATDVAARGLD+P VDLV L + +L S + R G+S
Sbjct: 291 VLVATDVAARGLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRS 335
>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
gi|75322251|sp|Q650T9.1|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
Length = 696
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 206/324 (63%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 117 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 176
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 177 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 236
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 237 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 296
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK+ TVDLVGD K + + ++ + +
Sbjct: 297 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARA 356
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 357 QVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRS 413
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F +L+AT+VAARGLD+ +V L+
Sbjct: 414 GKFLVLVATNVAARGLDINDVQLI 437
>gi|14517482|gb|AAK62631.1| AT5g62190/mmi9_10 [Arabidopsis thaliana]
Length = 671
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 210/337 (62%), Gaps = 12/337 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +SK I + L GI LFPIQ + + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSKFRIPAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F E SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDEYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +G
Sbjct: 205 SCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
Query: 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDIS 378
+I + +I +I+ ++ GG+ I+F +TK L+ + S LHG+I
Sbjct: 325 RHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIP 381
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
QSQRE TL+ FR+G+F L+AT+VAARGLD+ +V L+
Sbjct: 382 QSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLI 418
>gi|75319612|sp|Q41382.1|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
Length = 685
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 203/326 (62%), Gaps = 16/326 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 109 LSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVES 168
Query: 161 IIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K G GR P LVL PTRELA QV +F + A L VYGG P Q
Sbjct: 169 LVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQ 228
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ +L GVD VVGTPGRV DL+++ L L + F VLDEAD+ML +GF +DVE+IL ++
Sbjct: 229 ISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVD 288
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSIA--TSMYE 329
Q+++FSAT+P W++ ++ ++LK+ TVDLV SDQK+ IS+ I S
Sbjct: 289 HVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLV--SDQKMKASISVRHIVIPCSASA 346
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
+P +I +I + GG+ I+FT+TK A +LA + PLHGDI Q+QRE TL F
Sbjct: 347 RPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPLHGDIQQTQREVTLKGF 403
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
R G+F L+AT+VAARGLD+ +V L+
Sbjct: 404 RTGKFMTLVATNVAARGLDINDVQLI 429
>gi|15241726|ref|NP_201025.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
gi|108861902|sp|Q39189.2|RH7_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|8809632|dbj|BAA97183.1| RNA helicase [Arabidopsis thaliana]
gi|15810145|gb|AAL07216.1| putative RNA helicase [Arabidopsis thaliana]
gi|30793911|gb|AAP40408.1| putative DEAD/DEAH box RNA helicase PRH75 [Arabidopsis thaliana]
gi|332010196|gb|AED97579.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
Length = 671
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 210/337 (62%), Gaps = 12/337 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +SK IS + L GI LFPIQ + + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +G
Sbjct: 205 SCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
Query: 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDIS 378
+I + +I +I+ ++ GG+ I+F +TK L+ + S LHG+I
Sbjct: 325 RHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIP 381
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
QSQRE TL+ FR+G+F L+AT+VAARGLD+ +V L+
Sbjct: 382 QSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLI 418
>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
Length = 685
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 206/324 (63%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 106 LANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 165
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 166 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 225
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 226 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 285
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK+ TVDLVGD K + + ++ + +
Sbjct: 286 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARA 345
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 346 QVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRS 402
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F +L+AT+VAARGLD+ +V L+
Sbjct: 403 GKFLVLVATNVAARGLDINDVQLI 426
>gi|414886328|tpg|DAA62342.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 707
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 204/324 (62%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 123 LTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 182
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 183 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 242
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL- 273
AL GVD VVGTPGRV D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 243 EMALRRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 302
Query: 274 -PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ L+ ++LK + TVDLVG+ K + + ++ + +
Sbjct: 303 DATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARA 362
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A L+ + + LHGD++Q+QRE L+ FR
Sbjct: 363 QVIPDIIRCYSHGGRTIIFTETKDSASELSGLI---HGSRALHGDVAQAQREVILAGFRS 419
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F +L+AT+VAARGLD+ +V L+
Sbjct: 420 GKFQVLVATNVAARGLDINDVQLI 443
>gi|212721126|ref|NP_001132058.1| uncharacterized protein LOC100193470 [Zea mays]
gi|194693318|gb|ACF80743.1| unknown [Zea mays]
Length = 506
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 204/324 (62%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 123 LTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 182
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 183 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 242
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL- 273
AL GVD VVGTPGRV D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 243 EMALRRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 302
Query: 274 -PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ L+ ++LK + TVDLVG+ K + + ++ + +
Sbjct: 303 DATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARA 362
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A L+ + + LHGD++Q+QRE L+ FR
Sbjct: 363 QVIPDIIRCYSHGGRTIIFTETKDSASELSGLI---HGSRALHGDVAQAQREVILAGFRS 419
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F +L+AT+VAARGLD+ +V L+
Sbjct: 420 GKFQVLVATNVAARGLDINDVQLI 443
>gi|449667535|ref|XP_002167654.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 685
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/329 (44%), Positives = 211/329 (64%), Gaps = 15/329 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+G D+++ +IS+ + L GI FP+Q +G D+I +ARTGTGKTLAF +
Sbjct: 54 DKG-DLNRFEISKSTMTKLNAIGIKAFFPVQSTTYNAIFEGSDVIVQARTGTGKTLAFTL 112
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS-LDTICVYGGTPISHQ 214
P+++++ N RGR PL L LAPTRELA Q+ +E + P+ + C YGG+ Q
Sbjct: 113 PVIERLNSENLTE-RGRVPLVLALAPTRELAMQIYQEVEKFKPNNVQVSCFYGGSSYEKQ 171
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--- 271
L GVD +VGTPGR+ DLI+R L+L++++ V+LDEAD+M+ +GF +DVE IL+
Sbjct: 172 EGELRRGVDFLVGTPGRIADLIQRGVLDLTKLKHVILDEADRMMDMGFQDDVEKILKHSY 231
Query: 272 ---RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV-DLVGDSDQKLADGISLYSIATSM 327
R P + +F T+PPW++ + KYL + L V DL+G+ K A + I S
Sbjct: 232 TSARKP---PTFLFFGTVPPWLQQNSKKYLSSNLKVFDLIGEDKNKGATPVQHKVIKCSY 288
Query: 328 YEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTL 386
+E+P +I ++ ++ K GK I+FT TK++A+ L+ + + + LHGDISQSQRE TL
Sbjct: 289 WERPLLIKDIMQLYSGKFGKTIIFTTTKQEANELS-VESSIPDSQVLHGDISQSQREITL 347
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLV 415
FR+G+FN LIATDVAARGLD+P VDLV
Sbjct: 348 QGFRNGKFNCLIATDVAARGLDIPEVDLV 376
>gi|356575902|ref|XP_003556075.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 693
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/324 (44%), Positives = 206/324 (63%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 115 LSNFRISEPLRQKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILES 174
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
+I K + K G GR P LVL PTRELA QV +F + A L + C+YGG P Q
Sbjct: 175 LINGPTKASRKTGFGRTPSVLVLLPTRELACQVHADFDVYGGAMGLSSCCLYGGAPYQGQ 234
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L GVD V+GTPGRV D I++ ++LS+++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 235 EIKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVEDVEMILGKVE 294
Query: 275 Q-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
N+ Q+++FSAT+P W++ + ++LK + T DLVG++ K + + + + +
Sbjct: 295 NVNKVQTLLFSATLPDWVKQIAARFLKPDKKTADLVGNTKMKASINVRHIVLPCTSSARA 354
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ IVFT+TK A +LA + + LHGDI QS RE TLS FR
Sbjct: 355 QLIPDIIRCYSSGGRTIVFTETKESASQLAGILT---GAKALHGDIQQSTREVTLSGFRS 411
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F L+AT+VAARGLD+ +V L+
Sbjct: 412 GKFMTLVATNVAARGLDINDVQLI 435
>gi|1488521|emb|CAA68194.1| RNA helicase [Arabidopsis thaliana]
Length = 671
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 210/337 (62%), Gaps = 12/337 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +SK IS + L GI LFPIQ + + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG I Q L GVD VVGTPGR+ D I+R L+ S +F VLDEAD+ML +G
Sbjct: 205 SCCLYGGDSIPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYFKFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
Query: 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDIS 378
+I + +I +I+ ++ GG+ I+F +TK L+ + S LHG+I
Sbjct: 325 RHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIP 381
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
QSQRE TL+ FR+G+F L+AT+VAARGLD+ +V L+
Sbjct: 382 QSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLI 418
>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
Length = 711
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/348 (42%), Positives = 213/348 (61%), Gaps = 15/348 (4%)
Query: 80 AQSAVDDYVAYDDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG 136
+ SA DD SS ++ D ++ IS+ + +L +GI LFPIQ + + G
Sbjct: 100 SSSASDDDGEITASSDEDPADPNALTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDG 159
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK- 191
D++GRARTG GKTLAF +PIL+ ++ K R GR P +VL PTRELA QV
Sbjct: 160 NDLVGRARTGQGKTLAFVLPILESLVNGAHKASRRTEHGRTPSVIVLLPTRELANQVHAD 219
Query: 192 -EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
EF+ + L CVYGG+P Q AL GVD VVGTPGRV D I + LNL ++F V
Sbjct: 220 FEFYGATFGLSACCVYGGSPYRPQEMALRRGVDIVVGTPGRVKDFIVKGTLNLKNLKFRV 279
Query: 251 LDEADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLV 307
LDEAD+ML++GF +DVE+IL ++ Q+++FSAT+P W+ L+ ++LK + TVDLV
Sbjct: 280 LDEADEMLNMGFVDDVELILGKVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLV 339
Query: 308 GDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS 367
G+ K + + ++ + + +I +I ++ GG+ I+FT+TK A L+ + S
Sbjct: 340 GNEKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGS 399
Query: 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
LHGD+ Q+QRE L+ FR G+F +L+AT+VAARGLD+ +V L+
Sbjct: 400 ---RALHGDVVQAQREVILAGFRGGKFQVLVATNVAARGLDINDVQLI 444
>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650, partial [Aureococcus
anophagefferens]
Length = 482
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 150/333 (45%), Positives = 204/333 (61%), Gaps = 30/333 (9%)
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK------FN 165
A LA+RGI + IQ + A GRD++G++RTGTGKTLAFG+P+++++ + ++
Sbjct: 100 AKLAQRGIDTMTEIQHLTFDAAHAGRDVLGKSRTGTGKTLAFGLPLVERLAERAREGDYD 159
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
K R R P LVLAPTRELAKQVE E H A + L T C +GG Q AL GVD
Sbjct: 160 PKK-RARGPAILVLAPTRELAKQVEAELHLLAQTHGLSTTCFHGGVSYGPQENALRRGVD 218
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--------- 274
+V T GRVID I R L+LS+ VVLDEAD+MLS+GFA+DVE I
Sbjct: 219 VLVATVGRVIDHIDRGNLDLSDAYHVVLDEADEMLSMGFADDVERIFSDFDLDDLLGAAP 278
Query: 275 ---------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+ Q+++FSAT P W++ LT+KYL++P VD+VGD+ Q+ A ++ ++
Sbjct: 279 PPADAAAPLRRPQTLLFSATTPSWVKKLTSKYLEDPELVDVVGDARQQAATTVTHKAVLV 338
Query: 326 SMY--EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQR 382
+ S++ +I GG+ IVFT TK++ D LA A + + LHGDI Q+QR
Sbjct: 339 PRGPDARASLLEDIIAAAQGGGRVIVFTSTKKECDELAGGPAFQRLAAQVLHGDIGQAQR 398
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
E TL+ FR G F +L+ATDVAARG+DV VDLV
Sbjct: 399 ETTLAQFRRGAFTVLVATDVAARGIDVKGVDLV 431
>gi|84468310|dbj|BAE71238.1| hypothetical protein [Trifolium pratense]
Length = 402
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 122/202 (60%), Positives = 156/202 (77%)
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L LSE+Q++VLDEADQML+VGF EDVE ILE +
Sbjct: 2 QKNALSRGVDVVVGTPGRLIDLINGRSLQLSEIQYLVLDEADQMLAVGFEEDVESILETI 61
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQ M+FSATMP W++ L+ K+L NP T+DLVGD ++KLA+GI LY++ + K I
Sbjct: 62 PSQRQIMLFSATMPGWVKKLSRKHLNNPKTIDLVGDREEKLAEGIKLYAVPATSISKRRI 121
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ LI+ + KGGK IVFT+TKRDAD +++++ S + LHGDISQ QRERTL FR GR
Sbjct: 122 LSGLISAYGKGGKTIVFTRTKRDADEISYSLTSSIASKALHGDISQYQRERTLDGFRQGR 181
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+ATDVA+RGLD+PNVDL+
Sbjct: 182 FTVLVATDVASRGLDIPNVDLI 203
>gi|357159473|ref|XP_003578458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Brachypodium
distachyon]
Length = 694
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 141/324 (43%), Positives = 204/324 (62%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI+ LFPIQ + G D++GRARTG GKTLAF +PIL+
Sbjct: 120 LANFRISEPLKQKLKSKGINALFPIQATTFGLVLDGHDLVGRARTGQGKTLAFVLPILES 179
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ A L T C YGG+ Q
Sbjct: 180 LVNGPHKATRRTDYGRLPSVLVLLPTRELANQVHADFEFYGGAFGLSTCCAYGGSHYRPQ 239
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 240 EMAMRKGVDIVVGTPGRVKDFIVKGTLNLKSLKFRVLDEADEMLNMGFVDDVELILGKVE 299
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK + TVDLVG+ K + + ++ + +
Sbjct: 300 DVTKVQTLLFSATLPEWVKKLSMRFLKADKKTVDLVGNEKMKASSSVKHLALPCNRAARS 359
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
II +I +++GG+ I+FT+TK A L+ + S LHGDI+Q+QRE ++ FR
Sbjct: 360 QIIPDIIKCYSRGGRTIIFTETKESASELSGLIPGS---RALHGDIAQAQREVVIAGFRS 416
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F +L+AT+VAARGLD+ +V L+
Sbjct: 417 GKFLVLVATNVAARGLDINDVQLI 440
>gi|414590005|tpg|DAA40576.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 704
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 203/324 (62%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 125 LTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 184
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 185 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 244
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGR+ D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 245 EMALRRGVDIVVGTPGRIKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 304
Query: 275 QNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ L+ ++LK + TVDLVG+ K + + ++ + +
Sbjct: 305 DATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARA 364
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A L+ + S LHGD+ Q+QRE L+ FR
Sbjct: 365 QLIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGS---RALHGDVVQAQREVILAGFRS 421
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F +L+AT+VAARGLD+ +V L+
Sbjct: 422 GKFQVLVATNVAARGLDINDVQLI 445
>gi|414590004|tpg|DAA40575.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 671
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 203/324 (62%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 125 LTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 184
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 185 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 244
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL- 273
AL GVD VVGTPGR+ D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 245 EMALRRGVDIVVGTPGRIKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 304
Query: 274 -PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W+ L+ ++LK + TVDLVG+ K + + ++ + +
Sbjct: 305 DATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARA 364
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I ++ GG+ I+FT+TK A L+ + S LHGD+ Q+QRE L+ FR
Sbjct: 365 QLIPDIIRCYSHGGRTIIFTETKDSASELSGLIPGS---RALHGDVVQAQREVILAGFRS 421
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F +L+AT+VAARGLD+ +V L+
Sbjct: 422 GKFQVLVATNVAARGLDINDVQLI 445
>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 565
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/313 (45%), Positives = 202/313 (64%), Gaps = 10/313 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L + +I AL GI FPIQ+ L ++G D+IG+ARTGTGKTLAFGIP+L +I
Sbjct: 30 ELGVCSEIADALESEGIVDAFPIQEMALPIGLRGYDIIGQARTGTGKTLAFGIPLLQRI- 88
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDY 220
+HG G+ P LVLAPTRELA QV + + L T + VYGG Q++AL
Sbjct: 89 ----EHG-GKAPRGLVLAPTRELASQVTDDLLVAGGKLGTRVVAVYGGRAYEPQIQALRD 143
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR++DL ++ L+LS++Q +VLDEAD+ML +GF D+E I+E +P RQ+M
Sbjct: 144 GVDVVVGTPGRLLDLARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERIIELVPAERQTM 203
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I +L+ +YL P V ++ + ++ + T +KP ++ +L+
Sbjct: 204 LFSATMPGEIVALSRRYLNRPTNVRAEVHTESEATPQVTQHVFQTHPMDKPEVLARLLQA 263
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + G +VF QTKR DR+A + + + +HGD+ Q QRER L AFR G+ ++L+A
Sbjct: 264 NGR-GLTMVFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRERALRAFRSGKVDVLVA 322
Query: 400 TDVAARGLDVPNV 412
TDVAARGLDV +V
Sbjct: 323 TDVAARGLDVEDV 335
>gi|300120547|emb|CBK20101.2| unnamed protein product [Blastocystis hominis]
Length = 553
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 202/331 (61%), Gaps = 17/331 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + IS + + L +GI++LFPIQ + G+D+IGRA TG GKTLAF +PI++K
Sbjct: 17 MHRYRISPETIGILHSKGITELFPIQALSFDAIYDGKDLIGRAPTGQGKTLAFALPIVEK 76
Query: 161 IIKFNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
I K N + R R PLCLVL+PTRELA+Q++++ APSL T+C++GG P Q AL
Sbjct: 77 IYKLNLRPPRRSRAPLCLVLSPTRELAQQIDEQIRMIAPSLRTVCLFGGAPFDPQEFALR 136
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER------- 272
GV+ VVGTPGRV+D ++R L L E+Q+ +LDEAD+ML +GF+EDVE +++
Sbjct: 137 RGVEFVVGTPGRVLDHLERGTLQLGELQWFILDEADRMLDMGFSEDVEKVVDYAIKSGGE 196
Query: 273 ------LPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIAT 325
+P Q ++FSAT+P W+R + KY+ + +TVDLV + ++ D + +
Sbjct: 197 TKGPRIVPDRIQVLLFSATIPSWVREVMTKYMHPDKVTVDLVTEKEKASVD-VRHLVLRC 255
Query: 326 SMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRER 384
+ +I LI + G+ IVF K+ + LA LHGDI Q RE+
Sbjct: 256 PWEARAKVIADLIEVYCGVDGRAIVFCDMKKSCNELAGEECLRSIAGVLHGDIPQKTREQ 315
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
TL F+DG+F L+ATDVAARGLD+ + LV
Sbjct: 316 TLKDFKDGKFRCLVATDVAARGLDIQGITLV 346
>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
Length = 635
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 145/399 (36%), Positives = 232/399 (58%), Gaps = 37/399 (9%)
Query: 48 DDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDIS 107
D+ + FS + +H I +FK+ + ++ + D+ K++ L S I+
Sbjct: 62 DNKKNNYFSKKCKNYHKIR---EFKN--VNIQCKEVDEENILQDEEKKNKELFSSIPQIN 116
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF--- 164
Q IV L +GI + IQ P +G D+IGR+ TG+GKT+AF +P+++K+ K
Sbjct: 117 QKIVEFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTIAFALPLVEKLYKNIES 176
Query: 165 ----------------------NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SL 200
N+ ++P LVL PTREL+KQVE F E + +
Sbjct: 177 QKKIIKNKSNEINSIQHLSEEGNKNDNMDKDPYILVLEPTRELSKQVETTFKEISQFYNF 236
Query: 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
+ + +YGG ++Q L G+ + GTPGR+ID I++ L+L +++VVLDEAD+ML++
Sbjct: 237 NIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVVLDEADEMLNL 296
Query: 261 GFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
GF D+E IL + ++ Q +++SAT P WI+ +++KYLKNP+ +D++ ++ K + I
Sbjct: 297 GFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVI-NTINKTSKTIQ 355
Query: 320 LYSIAT--SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY-NCEPLHGD 376
+I T + EK ++ +I + GG+ I+FT+TK +AD LA + +Y N LHG+
Sbjct: 356 HIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILASEGSFNYLNFSVLHGN 415
Query: 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
I+QS RE T+ FR+G F +LIATD+AARGLD+ NVDL+
Sbjct: 416 IAQSTREHTMQRFRNGMFQVLIATDIAARGLDISNVDLI 454
>gi|443708232|gb|ELU03439.1| hypothetical protein CAPTEDRAFT_52524, partial [Capitella teleta]
Length = 707
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 139/303 (45%), Positives = 193/303 (63%), Gaps = 10/303 (3%)
Query: 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181
LFPIQ + M+G D IGRARTGTGKT AF IP+++ + K RG P LV+ P
Sbjct: 140 LFPIQAQTFDIIMEGVDCIGRARTGTGKTFAFAIPVVEMLNKKPAPTARG-APRVLVMLP 198
Query: 182 TRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
RELA QV F A +L +CVYGG PI Q+ AL GVD VVGTPGR++D+IKRN
Sbjct: 199 VRELAIQVAGNFKSLASRNLAVVCVYGGEPIYTQISALRRGVDVVVGTPGRIMDMIKRNE 258
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILER------LPQNRQSMMFSATMPPWIRSLT 294
L+LS+++ VVLDE D+ML +GFAE+V+ IL+ + N Q+++FSATMP W++ +
Sbjct: 259 LDLSKLEHVVLDEVDRMLDMGFAENVDEILQTRYNENDVESNPQTLLFSATMPDWVQKTS 318
Query: 295 NKYL-KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG-GKCIVFTQ 352
KY+ KN +DLVG + + + ++ + ++ + +G ++ ++ G+ +VF +
Sbjct: 319 QKYMKKNTRNIDLVGRERVRTSITVQHLALQCNYQDRAATVGDVLRVYSGSQGRAMVFCE 378
Query: 353 TKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
TKRDAD LA + LHGDI Q +R+ L FR+GR+ LI TDVAARGLD+P V
Sbjct: 379 TKRDADDLAVSPCIGIETHVLHGDIPQEKRQLVLQKFREGRYKCLITTDVAARGLDIPEV 438
Query: 413 DLV 415
DLV
Sbjct: 439 DLV 441
>gi|113931550|ref|NP_001039224.1| nucleolar RNA helicase 2 [Xenopus (Silurana) tropicalis]
gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
[Xenopus (Silurana) tropicalis]
Length = 755
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 198/326 (60%), Gaps = 8/326 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 180 DFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ ++
Sbjct: 240 RLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVCCFYGGTPYQQQVFSIK 299
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 300 EGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPE 359
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY+K +DLVG QK A + +I + +K ++
Sbjct: 360 ENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAV 419
Query: 334 IGQLITEHAKG-GKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+G ++ ++ GK I+F +K +A LA + + + +PLHGD+ Q +RE L FR
Sbjct: 420 LGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQ 479
Query: 392 GRFNILIATDVAARGLDVPNVDLVEL 417
G F +L+AT+VAARGLD+P VDLV L
Sbjct: 480 GSFEVLVATNVAARGLDIPEVDLVVL 505
>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 660
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 205/332 (61%), Gaps = 8/332 (2%)
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
L + GI+ LFPIQ + M G ++IGRARTG GKTLAF +P+++K+++ K R
Sbjct: 110 LKKHGIANLFPIQAMTFDKIMDGNNLIGRARTGMGKTLAFALPVVEKLLQSKIKPVPNRA 169
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
P + + PTRELA+QV EF + +L+T+C+YGGTP Q A G D V+GT GR++
Sbjct: 170 PRVICVTPTRELARQVTTEFEKLDTTLNTVCIYGGTPYQQQNAAFRSGTDIVIGTTGRIM 229
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN---RQSMMFSATMPPWI 290
D I R L + +F++LDEAD ML +GF ED++ I + ++ Q ++FSAT+P W+
Sbjct: 230 DHIDRGNLRFANCEFLILDEADTMLEMGFREDIQRIFDATQKSGVKPQILLFSATIPKWL 289
Query: 291 RSLTNKYL-KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK-GGKCI 348
+ ++Y+ K V+LV DSD + + + +I +P+++ L+ + K + I
Sbjct: 290 HEIADRYMDKKYEFVNLVQDSDDQASLDVQHVAIPCHWQSRPTLLASLLGVYGKQNARTI 349
Query: 349 VFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408
+F +TK+D + L+ +C LHGDI+Q+QRE T+ AFRDG+ +LIATDVAARGLD
Sbjct: 350 IFAETKKDCNELSVHPEIKQDCHVLHGDIAQAQRETTMKAFRDGQIRLLIATDVAARGLD 409
Query: 409 VPNVDLVELVVLERKEVQF--LSTQISRPGKS 438
+ NVDLV RK + + T + R G++
Sbjct: 410 M-NVDLVINSEPPRKASGYADVDTYVHRSGRT 440
>gi|407042825|gb|EKE41557.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 667
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/341 (39%), Positives = 210/341 (61%), Gaps = 11/341 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFALPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP W++ ++ KYL++ V V + ++ + K I LI
Sbjct: 252 TLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLI 311
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + G+ IVF TK + A A+ + C+ LHGDI Q QRE+TL+ FR+ +FN+L+
Sbjct: 312 RVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLV 371
Query: 399 ATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGK 437
ATDVAARGLD+ VDL+ + + + Q++ + + +R GK
Sbjct: 372 ATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGK 412
>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
Length = 758
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 198/326 (60%), Gaps = 8/326 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 180 DFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ ++
Sbjct: 240 RLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVCCFYGGTPYQQQVFSIK 299
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 300 EGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPE 359
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY+K +DLVG QK A + +I + +K ++
Sbjct: 360 ENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAV 419
Query: 334 IGQLITEHAKG-GKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+G ++ ++ GK I+F +K +A LA + + + +PLHGD+ Q +RE L FR
Sbjct: 420 LGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQ 479
Query: 392 GRFNILIATDVAARGLDVPNVDLVEL 417
G F +L+AT+VAARGLD+P VDLV L
Sbjct: 480 GSFEVLVATNVAARGLDIPEVDLVVL 505
>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
Length = 688
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 140/325 (43%), Positives = 205/325 (63%), Gaps = 15/325 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 108 LANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 167
Query: 161 IIKFNEKH-----GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISH 213
++ N KH GR P LVL PTRELAKQV EF+ + L + CVYGG+
Sbjct: 168 LV--NGKHKASGADYGRPPSVLVLLPTRELAKQVHTDFEFYGATFGLSSCCVYGGSEYRP 225
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q + GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 226 QEMKIRKGVDIVVGTPGRVKDFVQKGTLNFKSLKFRVLDEADEMLNMGFVDDVELILGKV 285
Query: 274 PQ--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
Q+++FSAT+P W+ L+ ++LK TVDLVGD K + + ++ + +
Sbjct: 286 EDVTKVQTLLFSATLPDWVGKLSLRFLKPGKKTVDLVGDEKLKASASVRHLALPCNRAAR 345
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 346 AQVIPDIIRCYSRGGRTIIFTETKESASELSGLIAGS---RALHGDVAQAQREVILAGFR 402
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
G+F +L+AT+VAARGLD+ +V L+
Sbjct: 403 SGKFLVLVATNVAARGLDINDVQLI 427
>gi|380302038|ref|ZP_09851731.1| DNA/RNA helicase, superfamily II [Brachybacterium squillarum M-6-3]
Length = 594
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 204/320 (63%), Gaps = 10/320 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ D+ +DIV AL+ +GI FPIQ L A++GRD+IG+A+TGTGKTL FGIP+L
Sbjct: 46 FADFDVREDIVEALSSKGIIHPFPIQSMTLPVALKGRDIIGQAKTGTGKTLGFGIPLLQS 105
Query: 161 IIKFNEKHGRGR---NPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM 215
+ E + GR P LV+ PTRELA QV ++ +++ + + VYGG Q+
Sbjct: 106 TVAPGEDNPTGRVIGKPQALVVLPTRELAVQVAEDLQDASAKRPVRILTVYGGRAYEPQI 165
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL+ GVD VVGTPGR+IDL+++ L+LS+V+ VLDEAD+ML +GF ED+E +L +P+
Sbjct: 166 EALEKGVDVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLRAVPE 225
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I +L +++ P + GD + AD I +K +
Sbjct: 226 KRQTMLFSATMPGPILALARRFMTQPTHIRAHDPGDVSRTKAD-IKQVVYRAHQLDKIEV 284
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G IVF +TKR ADR+A + K + PLHGD+ Q RE+ L AFR+G
Sbjct: 285 LARVLQSRGR-GLTIVFMRTKRQADRVAEDLQKRGFAAAPLHGDLGQGAREQALRAFRNG 343
Query: 393 RFNILIATDVAARGLDVPNV 412
+ ++L+ATDVAARG+DV +V
Sbjct: 344 KVDVLVATDVAARGIDVDDV 363
>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
Length = 727
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 133/294 (45%), Positives = 187/294 (63%), Gaps = 7/294 (2%)
Query: 129 VLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188
+P G D+I +ARTGTGKT +F IP+++K+ + RGR P LVL PTRELA Q
Sbjct: 184 TFDPVYDGEDVIAQARTGTGKTFSFAIPLVEKLQGDSAAPARGRAPKVLVLTPTRELAIQ 243
Query: 189 VEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
V K+F + L +C YGGT Q+ A+ G+D +VGTPGR+ D ++ + L+LS+++
Sbjct: 244 VAKDFKDIIKKLSIVCFYGGTSYMPQIEAIRNGIDILVGTPGRIKDHLQNHKLDLSKLKH 303
Query: 249 VVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT 303
VVLDE DQML +GFAE VE IL + N Q+++FSAT PPW+ + KY++
Sbjct: 304 VVLDEVDQMLDMGFAEQVEEILALSYKKDADTNPQTLLFSATCPPWVYDVAKKYMRPSCK 363
Query: 304 -VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLA 361
VDL+G QK A + +IA ++ ++IG +I ++ G+ IVF +TK++A+ LA
Sbjct: 364 HVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIRVYSGSHGRAIVFCETKKEANELA 423
Query: 362 HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+ N + LHGDI Q QRE TL FR G F +L+AT+VAARGLD+P VDLV
Sbjct: 424 LNASIKQNAQSLHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVDLV 477
>gi|449703528|gb|EMD43965.1| ATP-dependent RNA helicase, putative [Entamoeba histolytica KU27]
Length = 695
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 134/341 (39%), Positives = 210/341 (61%), Gaps = 11/341 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP W++ ++ KYL++ V V + ++ + K I LI
Sbjct: 252 TLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLI 311
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + G+ IVF TK + A A+ + C+ LHGDI Q QRE+TL+ FR+ +FN+L+
Sbjct: 312 RVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLV 371
Query: 399 ATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGK 437
ATDVAARGLD+ VDL+ + + + Q++ + + +R GK
Sbjct: 372 ATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGK 412
>gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 723
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 134/341 (39%), Positives = 210/341 (61%), Gaps = 11/341 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP W++ ++ KYL++ V V + ++ + K I LI
Sbjct: 252 TLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLI 311
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + G+ IVF TK + A A+ + C+ LHGDI Q QRE+TL+ FR+ +FN+L+
Sbjct: 312 RVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLV 371
Query: 399 ATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGK 437
ATDVAARGLD+ VDL+ + + + Q++ + + +R GK
Sbjct: 372 ATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGK 412
>gi|357444227|ref|XP_003592391.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355481439|gb|AES62642.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 641
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 143/340 (42%), Positives = 206/340 (60%), Gaps = 28/340 (8%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISK IS+ + L +GI LFPIQ + +QG D++GRARTG GKTLAF +PIL+
Sbjct: 45 ISKFKISEPLREKLKEKGIESLFPIQAMTFDIILQGCDLVGRARTGQGKTLAFVLPILES 104
Query: 161 II---------KFNEKHGRGR-----------NPLCLVLAPTRELAKQVEKEF--HESAP 198
+ K E +G R P LVL PTRELA QV +F + A
Sbjct: 105 VTNGKAKETNAKTKETNGNARESRKGGYGGPPKPSVLVLLPTRELACQVNADFEVYGGAM 164
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L + C+YGG P Q L+ GVD V+GTPGR+ D I R +++LS+++F VLDEAD+ML
Sbjct: 165 GLTSCCLYGGAPYKAQEIKLERGVDIVIGTPGRIKDHIVRGSIDLSQLKFRVLDEADEML 224
Query: 259 SVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLA 315
+GF EDVE+IL ++ Q+++FSAT+P W++++ ++LK + T DLVG++ K +
Sbjct: 225 RMGFVEDVELILGKVKNVDQVQTLLFSATLPEWVKNIAKRFLKEDKQTADLVGNTKMKAS 284
Query: 316 DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
+ Y + + + +I +I ++ G+ I+FT+TK A +LA + LHG
Sbjct: 285 TSVRHYILPCTGAARSQLIPDIIRCYSSEGRTIIFTETKESASQLAELLP---GARALHG 341
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
DI Q+QRE TLS FR G+F L+AT+VAARGLD+ +V L+
Sbjct: 342 DIQQAQREVTLSGFRYGKFMTLVATNVAARGLDINDVQLI 381
>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
Length = 727
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 197/326 (60%), Gaps = 8/326 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK +S++ + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 148 DFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 207
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
K+ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 208 KLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVSCFYGGTPYQQQVFAIK 267
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 268 DGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPE 327
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY++ +DL+G QK A + +I + +K ++
Sbjct: 328 ENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAV 387
Query: 334 IGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRD 391
+G L+ ++ GK I+F +K +A LA + + + LHGD+ Q +RE L FR
Sbjct: 388 LGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQ 447
Query: 392 GRFNILIATDVAARGLDVPNVDLVEL 417
G F +LIAT+VAARGLD+P VDLV L
Sbjct: 448 GTFEVLIATNVAARGLDIPEVDLVVL 473
>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
Length = 759
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 197/326 (60%), Gaps = 8/326 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK +S++ + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 180 DFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
K+ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 240 KLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVSCFYGGTPYQQQVFAIK 299
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 300 DGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPE 359
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY++ +DL+G QK A + +I + +K ++
Sbjct: 360 ENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAV 419
Query: 334 IGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRD 391
+G L+ ++ GK I+F +K +A LA + + + LHGD+ Q +RE L FR
Sbjct: 420 LGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQ 479
Query: 392 GRFNILIATDVAARGLDVPNVDLVEL 417
G F +LIAT+VAARGLD+P VDLV L
Sbjct: 480 GTFEVLIATNVAARGLDIPEVDLVVL 505
>gi|417412883|gb|JAA52800.1| Putative nucleolar rna helicase 2, partial [Desmodus rotundus]
Length = 840
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 205/349 (58%), Gaps = 34/349 (9%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 218 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 277
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM----- 215
++ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+
Sbjct: 278 LLGELQERKRGRAPQVLVLAPTRELANQVSKDFIDITKKLAVACFYGGTPYGGQIERMRN 337
Query: 216 ----------RALDY------------GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
R D+ G+D +VGTPGR+ D ++ L+L++++ VVLDE
Sbjct: 338 GIDILVGTPGRIKDHLXYGGQLERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDE 397
Query: 254 ADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLV 307
DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+K+ VDL+
Sbjct: 398 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 457
Query: 308 GDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAK 366
G QK A + +I ++ ++IG +I ++ G+ I+F +TK++A L+ +
Sbjct: 458 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNASI 517
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+ + LHGDI Q QRE TL FR+G F +L+AT+VAARGLD+P VDLV
Sbjct: 518 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLV 566
>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
SAW760]
Length = 689
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/341 (39%), Positives = 210/341 (61%), Gaps = 11/341 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP W++ ++ KYL++ V V + ++ + K I LI
Sbjct: 252 TLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLI 311
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ + G+ IVF TK + A A+ + C+ LHGDI Q QRE+TL+ FR+ +FN+L+
Sbjct: 312 RVYGRTGRTIVFCDTKAECTDCAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLV 371
Query: 399 ATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGK 437
ATDVAARGLD+ VDL+ + + + Q++ + + +R GK
Sbjct: 372 ATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGK 412
>gi|386774462|ref|ZP_10096840.1| DNA/RNA helicase, superfamily II [Brachybacterium paraconglomeratum
LC44]
Length = 596
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 204/320 (63%), Gaps = 10/320 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ D+ DIV ALA +GI+ FPIQ L A++GRD+IG+A+TGTGKTL FGIP+L
Sbjct: 20 FADFDVRADIVKALAAKGITTPFPIQALTLPVALRGRDIIGQAKTGTGKTLGFGIPLLQS 79
Query: 161 IIKFNEKHGRGR---NPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM 215
+ E + R P LV+ PTRELA QV + ++ + + VYGG Q+
Sbjct: 80 SVAPGEPNPDDRPIGKPQALVVLPTRELAVQVAHDLETASAKRPIRILTVYGGRAYEPQI 139
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL+ GV+ VVGTPGR+IDL+++ L+LS+V+ VLDEAD+ML +GF ED+E +L+ +P
Sbjct: 140 EALEKGVEVVVGTPGRLIDLMRQKHLDLSQVRTAVLDEADEMLDLGFLEDIEKLLQAVPA 199
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLADGISLYSIATSMYEKPSI 333
NRQ+M+FSATMP I +L +++K P + GD + AD I +K +
Sbjct: 200 NRQTMLFSATMPGPIMALARRFMKQPTHIRAHDPGDESRTKAD-IKQVVYRAHQLDKIEV 258
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G I+F +TKR ADR+A +A + + PLHGD+ Q RE+ L AFR+G
Sbjct: 259 MARVLQARGR-GLSIIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFRNG 317
Query: 393 RFNILIATDVAARGLDVPNV 412
+ ++L+ATDVAARG+DV +V
Sbjct: 318 KIDVLVATDVAARGIDVTDV 337
>gi|148224339|ref|NP_001082033.1| nucleolar RNA helicase 2 [Xenopus laevis]
gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
Length = 800
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 208/351 (59%), Gaps = 10/351 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + +G++ LFPIQ G+D++ +ARTGTGKT +FGIP+++
Sbjct: 222 DFSKFPISKDTIKNXQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVE 281
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 282 RLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKLKVACFYGGTPYQQQVFAIK 341
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGR+ DL++ L+L+ ++ VVLDE D M VGF+E VE IL
Sbjct: 342 DGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILSVRYKPDPE 401
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY++ VDLVG QK A + +I + +K ++
Sbjct: 402 ENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAV 461
Query: 334 IGQLITEHAKG-GKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+G ++ ++ GK I+F +K A L+ + + + +PLHGD+ Q +RE L FR
Sbjct: 462 LGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQ 521
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRV 440
G F +LIAT+VAARGLD+P VDLV L ++ ++ S + R G++ V
Sbjct: 522 GTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGV 572
>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
Length = 768
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 209/351 (59%), Gaps = 10/351 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + L +G++ LFPIQ G+D++ +ARTGTGKT +FGIP+++
Sbjct: 190 DFSKFPISKDTIKNLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVE 249
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 250 RLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKLKVACFYGGTPYQQQVFAIK 309
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGR+ DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 310 DGIDFLVGTPGRIRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPE 369
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
+N Q+++FSAT P W+ ++ KY++ VDLVG QK A + +I + +K ++
Sbjct: 370 ENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAV 429
Query: 334 IGQLITEHAKG-GKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+G ++ ++ GK I+F +K A L+ + + + +PLHGD+ Q +RE L FR
Sbjct: 430 LGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQ 489
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRV 440
G F +LIAT+VAARGLD+P VDLV L ++ ++ S + R G++ V
Sbjct: 490 GTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGV 540
>gi|384496820|gb|EIE87311.1| hypothetical protein RO3G_12022 [Rhizopus delemar RA 99-880]
Length = 665
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 209/338 (61%), Gaps = 11/338 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V + + DE L +S IS+ + L ++GIS LF IQ A + G+D++ RARTGT
Sbjct: 58 VVEETDNSDEKLALSNFRISEGTIENLEKKGISSLFEIQAATFDTIYDGKDVLARARTGT 117
Query: 148 GKTLAFGIPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICV 205
GKTLAF IP+++++ + N + RGR+P LVL PTR+LAKQV +F + S L T+ V
Sbjct: 118 GKTLAFAIPVVERLALDKNYRERRGRSPRVLVLCPTRDLAKQVCGDFEQVSGNRLKTLPV 177
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAE 264
YGG P + Q GVD VVGTPGR++D IK + L +++F+VLDEAD+ML GF E
Sbjct: 178 YGGVPYNEQTSVFREGVDVVVGTPGRILDHIKFGNMKLHDLKFIVLDEADEMLDARGFEE 237
Query: 265 DVEVILERLPQNR-----QSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGI 318
D+ +L + + + Q+++FSAT+P + ++LK +DL+G++ + I
Sbjct: 238 DMFNLLSSIQEQKETRDYQTLLFSATVPESVMQTIQRFLKEDYERIDLIGNAKNRTNTNI 297
Query: 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDI 377
++ +S + + IIG ++ + + G ++F TK DA+ L AH K + LHGDI
Sbjct: 298 RHIAMPSSYHTRADIIGDVVNVYGRSGLTVIFCATKADANELGAHDKIKQ-DAAVLHGDI 356
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+Q+ RE T+ AFR+G++ ++ TDV ARGLD+P VDLV
Sbjct: 357 AQASREATMKAFREGKYKCIVCTDVLARGLDIPQVDLV 394
>gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
Length = 470
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 135/315 (42%), Positives = 199/315 (63%), Gaps = 10/315 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII-----K 163
+I AL GI FPIQ+ L A+ G D+IG+ARTGTGKTLAF IP++ + + +
Sbjct: 3 EIADALTGHGIETPFPIQEMTLSVALMGTDLIGQARTGTGKTLAFAIPVIQRTVAPHDPE 62
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
+ E G+ P L++APTRELA QV + ++ T + +YGG P Q+ AL+ G
Sbjct: 63 YGELAAPGK-PQALIIAPTRELAIQVAGDVAMASKLRGTRNLTIYGGVPYEGQLDALESG 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD V+GTPGR++DL R AL+LS V+ +VLDEAD+ML +GF DVE IL + P+ RQ+M+
Sbjct: 122 VDIVIGTPGRILDLANRRALDLSHVKSMVLDEADEMLDLGFLPDVEAILAKTPELRQTML 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I L K++++P+ + D ++ + + +KP I+ +++ +
Sbjct: 182 FSATMPGAIVGLARKHMRHPMNIRAESSEDTQMVPATAQFVWQAHDMDKPEIVSRIL-QA 240
Query: 342 AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ I+FT+TKR A R+A + + + PLHGD++Q+ RE+ L FRDG+ N L+AT
Sbjct: 241 DDVARVIIFTRTKRTAQRVADELVDRGFPASPLHGDMAQTAREKALQRFRDGKINTLVAT 300
Query: 401 DVAARGLDVPNVDLV 415
DVAARG+DV N+ V
Sbjct: 301 DVAARGIDVANISHV 315
>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
Length = 489
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 208/334 (62%), Gaps = 23/334 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D ++L ++ IVAALA +GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L
Sbjct: 7 DFAELGVAGPIVAALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQ 66
Query: 160 KIIKFNEKHG----------------RGRNPLCLVLAPTRELAKQVEKEFHESAPS--LD 201
+++ NE R P LV+ PTRELAKQV + ++ +D
Sbjct: 67 RVVGKNEDGAAPADPENTPEFVSDSTETRLPQALVVVPTRELAKQVAADLVTASTQRDID 126
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q++ L GVD VVGTPGR++DL R L L +V+ VVLDEAD+ML +G
Sbjct: 127 IMTIYGGMDFDPQIKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLG 186
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL--ADGIS 319
F DVE I+ +P +RQ+M+FSATMP + +L +Y+ P + + D L +
Sbjct: 187 FLPDVEKIINAVPAHRQTMLFSATMPGAVITLARRYMSRPTHIRAHDNEDLSLLGKNTEQ 246
Query: 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDIS 378
L A SM +K ++ +++ + G+ I+FT+TKR AD+LA + + + +PLHGD+
Sbjct: 247 LVYRAHSM-DKSELVARMLQAEGR-GRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLG 304
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
Q+QRE+ L +FR+G+ ++L+ATDVAARG+D+ +V
Sbjct: 305 QAQREKALKSFREGQVDVLVATDVAARGIDIDDV 338
>gi|403331283|gb|EJY64580.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 1264
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 156/358 (43%), Positives = 218/358 (60%), Gaps = 17/358 (4%)
Query: 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
Y DS EG ++ +ISQ VA L RGI LFPIQ+ P +G+D+IGR TG+GK
Sbjct: 423 YGDSQ--EGQFVNYPEISQKSVAILKERGIKYLFPIQQECFYPIYEGKDLIGRDLTGSGK 480
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVY 206
TLAF +P+L+++ K +K G R +VLAPTRELA QV+ F + D T+ VY
Sbjct: 481 TLAFVLPLLERLRK-TKKLG-TRKIQAIVLAPTRELAVQVQNVFAQMKHFDDEYRTLTVY 538
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GG PI Q AL GVD VGT GRV+D I+R ++ S ++ V LDEAD ML +GF EDV
Sbjct: 539 GGVPIDPQTSALTRGVDIFVGTTGRVLDHIERGNIDFSGIKSVFLDEADVMLKLGFKEDV 598
Query: 267 EVIL----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLY 321
+ IL ++ ++ Q +FSAT+PPW+R + ++L+ T VDL D K A +
Sbjct: 599 DKILSIIRDQCREDIQICLFSATIPPWVRDIAQEHLRQGYTMVDLAKDLKNKTAKRVRHI 658
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYN-CEPLHGDISQS 380
+I Y+ +I L+ + GG+ IVFT+TK DA+ L + S N + +HGDI Q
Sbjct: 659 AINCPFYKTEQVILDLLMMYGTGGRSIVFTKTKSDANSLISSDRFSKNDIQVMHGDIPQH 718
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
RE TL AF++GR +L+ATDVA+RGLD+PNV+L +++ + Q T I R G++
Sbjct: 719 SREMTLRAFKEGRLKVLVATDVASRGLDIPNVEL----IVQTEPPQDPETYIHRAGRT 772
>gi|343470250|emb|CCD17000.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 633
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 202/340 (59%), Gaps = 12/340 (3%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + ++ SK G S D+S IV AL ++GI+ LFP+Q E ++G D++ +ART
Sbjct: 33 DNIIPNNGSKTVGRPFSDFDLSPGIVKALEKQGITSLFPVQALTFEAIIRGEDVLVQART 92
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
G+GKTLAFGIPI++K+ K RGR P ++ PTRELA QV + L +
Sbjct: 93 GSGKTLAFGIPIVEKLNKIEGPLPRGRGPSAVIFCPTRELAIQVRDVLSSISGDLVVAAL 152
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q R L GVD VV TPGR D +++ L V+ LDEAD ML +GF ED
Sbjct: 153 YGGVAYSIQERVLHSGVDIVVATPGRAKDFLEKGTLRFDRVKMACLDEADHMLDIGFKED 212
Query: 266 VEVILERLPQ---------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
+E++L+R+ + N Q+++FSAT+P W+ + + KN +D+VG + + A+
Sbjct: 213 IELLLQRVAEHNGSTYERCNHQTLLFSATVPDWVHTCSF-ISKNKKFIDMVGQGEMRAAN 271
Query: 317 GISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
I + E S++ L+ ++ + G+ ++FT TK+D L+ K + + LHG
Sbjct: 272 TIKFFRRKCGFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTK-LDSQCLHG 330
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
D+ Q QRE T+ +FR+ F++LIATDVAARGLD+P VDLV
Sbjct: 331 DMQQDQRESTMKSFRENMFSVLIATDVAARGLDLPMVDLV 370
>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
Length = 627
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 202/340 (59%), Gaps = 20/340 (5%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
++ K EG D+S +S D+ L RG+ LFPIQ G+D+I +A+TGTGKT
Sbjct: 37 NEVEKVEG-DLSNFPLSSDLQKKLQARGVKALFPIQIKTFHHIHTGKDVIAQAKTGTGKT 95
Query: 151 LAFGIPILDKIIKFNEKHG-----RGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTIC 204
AF +P+L K+ E G GR P +V+APTREL Q+ +F + +L +
Sbjct: 96 FAFALPVLTKL----ENSGIDGLKSGRKPKVIVMAPTRELVSQIASDFESLISKNLKVLS 151
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG Q AL GVD + G PGRV DLI + L+LS++++V+LDE D+ML +GF++
Sbjct: 152 IYGGVSYEKQTTALKNGVDIIAGAPGRVRDLINKGHLDLSKIEYVILDEVDRMLDMGFSD 211
Query: 265 DVEVIL------ERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADG 317
VE IL E + Q+++FSATMP WI ++ KYLK + + V L+ ++ K A
Sbjct: 212 IVEEILSYIYPSETDKKGPQTLLFSATMPNWIHNIVKKYLKPDAIKVCLIDENGSKAAST 271
Query: 318 ISLYSIATSMYEKPSIIGQLITEHAKGG--KCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
+ +I E+ I +I H G +CI+F + K+DAD LA A +C LHG
Sbjct: 272 VEHLAIQCPWRERAGTIPDIIRVHGGGNQARCIIFCERKKDADELASHSAMKSDCHVLHG 331
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
D+ Q +RE L FR+G++++L+ T+VAARGLDVP++DLV
Sbjct: 332 DVPQEKRELVLKKFREGKYSVLVTTNVAARGLDVPDIDLV 371
>gi|342181264|emb|CCC90744.1| putative nucleolar RNA helicase II [Trypanosoma congolense IL3000]
Length = 633
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 202/340 (59%), Gaps = 12/340 (3%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + ++ SK G S D+S IV AL ++GI+ LFP+Q E ++G D++ +ART
Sbjct: 33 DNIIPNNGSKAVGRPFSDFDLSPGIVKALEKQGITSLFPVQALTFEAIIRGEDVLVQART 92
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
G+GKTLAFGIPI++K+ K RGR P ++ PTRELA QV + L +
Sbjct: 93 GSGKTLAFGIPIVEKLNKIEGPLPRGRGPSAVIFCPTRELAIQVRDVLSSISGDLVVAAL 152
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q R L GVD VV TPGR D +++ L V+ LDEAD ML +GF ED
Sbjct: 153 YGGVAYSIQERVLHSGVDIVVATPGRAKDFLEKGTLRFDRVKMACLDEADHMLDIGFKED 212
Query: 266 VEVILERLPQ---------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
+E++L+R+ + N Q+++FSAT+P W+ + + KN +D+VG + + A+
Sbjct: 213 IELLLQRVAEHNGSTYERCNHQTLLFSATVPDWVHTCSF-ISKNKKFIDMVGQGEMRAAN 271
Query: 317 GISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
I + E S++ L+ ++ + G+ ++FT TK+D L+ K + + LHG
Sbjct: 272 TIKFFRRKCGFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTK-LDSQCLHG 330
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
D+ Q QRE T+ +FR+ F++LIATDVAARGLD+P VDLV
Sbjct: 331 DMQQDQRESTMKSFRENMFSVLIATDVAARGLDLPMVDLV 370
>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
Length = 534
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/322 (43%), Positives = 199/322 (61%), Gaps = 22/322 (6%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S ++AAL G + P+Q + + GRD I +A TGTGKT AF +PIL +
Sbjct: 15 AALGLSPALLAALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALPILQGL 74
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALD 219
+ + G P LVL PTRELA QV + H LD + +YGG PI Q+RAL
Sbjct: 75 VPY------GHGPQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLRALR 128
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+ VD +VGTPGR++D ++R L L +V+ V+LDEAD+ML +GF EDVE ILE +P+ RQ+
Sbjct: 129 HPVDVIVGTPGRIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRERQT 188
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSII 334
+FSAT+PP IR LT +YL+ P+T+ + + +++ SIA ++YE K +
Sbjct: 189 ALFSATIPPRIRQLTQRYLRAPVTIAIHPER-------VTVPSIAQTVYEVAAHAKLEAL 241
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393
+++ A I+F +TK AD LAH + Y E +HGD+SQ+ R+R + FR G+
Sbjct: 242 SRILDYEAP-TSAIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQ 300
Query: 394 FNILIATDVAARGLDVPNVDLV 415
++LIATDVAARGLD+P V V
Sbjct: 301 VDLLIATDVAARGLDIPAVSHV 322
>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
Length = 582
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/346 (42%), Positives = 211/346 (60%), Gaps = 14/346 (4%)
Query: 79 HAQSAVDDYVAYDDSSKD----EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM 134
H + AV A + SS E + D+ DIV ALA +GI+ FPIQ L A+
Sbjct: 7 HTEEAVSASPAVEQSSGAAAPVEERTFADFDVRTDIVEALAAKGITTPFPIQSLTLPVAL 66
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR---NPLCLVLAPTRELAKQVEK 191
+GRD+IG+A+TGTGKTL FGIP+L + E + R P LV+ PTRELA QV
Sbjct: 67 RGRDIIGQAKTGTGKTLGFGIPLLQNSVAPGEPNPADRPIGTPQALVVLPTRELAVQVAH 126
Query: 192 EFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
+ ++ + + VYGG Q+ AL+ GV+ VVGTPGR+IDL+++ L+LS+V+
Sbjct: 127 DLETASAKRPIRILTVYGGRAYEPQIEALEKGVEVVVGTPGRLIDLMRQKYLDLSQVRTA 186
Query: 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL--V 307
VLDEAD+ML +GF ED+E +L+ +P RQ+M+FSATMP I +L +++K P +
Sbjct: 187 VLDEADEMLDLGFLEDIEKLLQAVPVKRQTMLFSATMPGPIMALARRFMKQPTHIRAHDP 246
Query: 308 GDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-K 366
GD + AD I +K ++ +++ + G I+F +TKR ADR+A +A +
Sbjct: 247 GDESRTKAD-IKQVVYRAHQLDKIEVMARILQARGR-GLSIIFMRTKRQADRVAGDLADR 304
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
+ PLHGD+ Q RE+ L AFR G+ ++L+ATDVAARG+DV +V
Sbjct: 305 GFAAAPLHGDLGQGAREQALRAFRSGKIDVLVATDVAARGIDVTDV 350
>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase [Truepera radiovictrix DSM 17093]
gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
17093]
Length = 526
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/313 (43%), Positives = 187/313 (59%), Gaps = 9/313 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + AL +G S IQ A L A+ G D++G ARTGTGKTLAFG+PI +++
Sbjct: 5 LPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIANRL-- 62
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ RGR P L+L PTRELA QV E AP + + VYGGT Q L G D
Sbjct: 63 -EPESARGRAPRALILTPTRELALQVAGELEWLAPEHNVVTVYGGTGYGKQASDLKRGAD 121
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VV TPGR +D K+ L LS V+ VLDEAD+ML+ GF EDVE++L PQ RQ+++FS
Sbjct: 122 IVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATPQERQTLLFS 181
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
AT+P W SL ++L++PL ++ D + +I + + ++ ++ H
Sbjct: 182 ATLPRWAESLAARHLRDPLRANVTSDESVSYDE----VAIEAPLASRLGVLSDVLHVHGT 237
Query: 344 GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G IVFT+TK + D LA A+ + E +HGD++Q QRER L FR + +L+ATDV
Sbjct: 238 GA-SIVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLVATDV 296
Query: 403 AARGLDVPNVDLV 415
AARGLD+P VDLV
Sbjct: 297 AARGLDIPEVDLV 309
>gi|403335713|gb|EJY67037.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 972
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/348 (43%), Positives = 209/348 (60%), Gaps = 14/348 (4%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
+I Q V L RGI LFPIQ+ P D+I R TG+GKTLAFG+PI++ + K
Sbjct: 160 EIPQRTVDKLKSRGIISLFPIQQQTFYPIYNREDVIARDLTGSGKTLAFGLPIIEYLRK- 218
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALDYG 221
N+ G+ R ++LAPTRELA QV+ E + +I VYGG PI Q R L YG
Sbjct: 219 NKFLGQ-RKVQAILLAPTRELAIQVQNELSQLKHGDMEFKSITVYGGVPIDDQARDLKYG 277
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----NR 277
VD +VGT GRV D I+R ++ S V+ VLDEAD+ML +GF +D+E I+ ++ + +
Sbjct: 278 VDIIVGTAGRVKDHIERGNIDFSSVKSFVLDEADRMLDLGFKDDIEWIMSQITRQCQFDV 337
Query: 278 QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q +FSAT+P W++++ +YLK N VDL + K A + SI K S +
Sbjct: 338 QKCLFSATIPLWVKNVARQYLKPNYRLVDLAQNLTNKTAKSVQHLSICCPEQNKMSTLAD 397
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
L+ + G+ IVFTQTK DA+ L + E +HGDI Q+QRE TL FRDG+F++
Sbjct: 398 LLICYGGDGRAIVFTQTKVDANALILTDKIKQDIEVMHGDIPQNQREVTLKRFRDGKFSV 457
Query: 397 LIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKSRVLSEM 444
L+ATDVA+RGLD+PNVDLV + V EV+ T I R G++ +M
Sbjct: 458 LVATDVASRGLDIPNVDLV-IQVEPPNEVE---TYIHRSGRTARAGKM 501
>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 501
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/346 (41%), Positives = 209/346 (60%), Gaps = 11/346 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L ++ IV AL GI+ FPIQ+ + A+ G DMIG+ARTGTGKTLAFGIPIL K
Sbjct: 18 FADLGVAPSIVTALDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIPILQK 77
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
++ F++ + + P LV++PTRELA+QV + + + +YGG
Sbjct: 78 VVLKTDEGFDQLDPKDK-PQALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYDD 136
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL+ R L+LS V+ VLDEAD+ML +GF DV+ +L+R
Sbjct: 137 QLDALKKGVDVVVGTPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLPDVQALLDRT 196
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+MMFSATMP I SL L P+ + G Q + + +KP +
Sbjct: 197 PASRQTMMFSATMPAVIMSLARSRLNQPVNIRAEGRDAQATVPQTTQFIYQAHELDKPEM 256
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ K +VFT+TKR A RLA + + + LHGD++QSQRE+T+ FR+
Sbjct: 257 IGKMLQSEGM-RKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRND 315
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+ +L+ATDVAARG+DV +V V + Q++ +I R G++
Sbjct: 316 KIQVLVATDVAARGIDVDDVTHVVNYEVPDDPEQYVH-RIGRTGRA 360
>gi|377574212|ref|ZP_09803243.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
gi|377537015|dbj|GAB48408.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
Length = 544
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 215/365 (58%), Gaps = 13/365 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ D+ DIVAALA GI FPIQ L A+ G D+IG+A+TGTGKTL FG+P+LD+
Sbjct: 47 FADFDVHPDIVAALADAGIVTPFPIQAMTLPVALGGYDIIGQAKTGTGKTLGFGVPLLDR 106
Query: 161 IIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
++ F + GR P LV+APTRELA QV + +A + +YGG
Sbjct: 107 VVAPGDEGFEDLPHPGR-PQGLVVAPTRELANQVAGDLTRAASRRGIRVTTIYGGRAFEP 165
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GV+ VVGTPGR+IDL+++ LNL ++ +VLDEAD+ML +GF DVE +L +
Sbjct: 166 QIEALQKGVEVVVGTPGRLIDLMQQGHLNLHAIRTLVLDEADEMLDLGFLPDVEKLLAQT 225
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPS 332
P +RQ+M+FSATMP + +L +Y+ P + + D D+ + I Y +K
Sbjct: 226 PASRQTMLFSATMPGAVVTLARRYMTRPTHIRAISDDDEGQTVAAIDQYVYRAHAMDKVE 285
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++ +++ + G I+F++TKR A ++A +A + + +HGD+ Q RE+ L AFR+
Sbjct: 286 MVARILQAEGR-GLTIIFSRTKRTAAKVADELADRGFAAASIHGDLGQGAREQALRAFRN 344
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADL 449
G+ +IL+ATDVAARG+DV NV V E +L + + R G V ++D D
Sbjct: 345 GKVDILVATDVAARGIDVENVTHVINYQCPEDEKTYLHRTGRTGRAGHKGVAITLVDWDD 404
Query: 450 LSSQG 454
+ G
Sbjct: 405 MPRWG 409
>gi|360044772|emb|CCD82320.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 710
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 198/325 (60%), Gaps = 11/325 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S +I+ I+ L R IS+LFP+Q + GRD + ARTGTGKTLAF +P+++
Sbjct: 97 DFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPLVN 156
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRAL 218
+IK + R +P+ LVLAPTREL Q+ +F S + VYGG P Q AL
Sbjct: 157 SLIK--GQGSRPSSPVVLVLAPTRELVTQIATDFESISVHGIKVTSVYGGVPYRPQCDAL 214
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----- 273
G VVG PGRVIDL+++ L LS V+ VVLDE D+ML +GF++DVE IL ++
Sbjct: 215 RQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVESILSKIYNSEN 274
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+ Q+++FSATMP W+ ++ YL + L + L+ + + K + ++ ++ + +
Sbjct: 275 SEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLCPYESRAA 334
Query: 333 IIGQLITEHAKG--GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
+ +I + KG +CIVF + K+DAD L+ + A S +C LHG + Q +RE L FR
Sbjct: 335 TLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLHGSVPQDKRELVLQRFR 394
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
DG++ L+ T+VAARGLDVPNVDLV
Sbjct: 395 DGKYRTLLTTNVAARGLDVPNVDLV 419
>gi|256083212|ref|XP_002577843.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 794
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 198/325 (60%), Gaps = 11/325 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S +I+ I+ L R IS+LFP+Q + GRD + ARTGTGKTLAF +P+++
Sbjct: 181 DFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPLVN 240
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRAL 218
+IK + R +P+ LVLAPTREL Q+ +F S + VYGG P Q AL
Sbjct: 241 SLIK--GQGSRPSSPVVLVLAPTRELVTQIATDFESISVHGIKVTSVYGGVPYRPQCDAL 298
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----- 273
G VVG PGRVIDL+++ L LS V+ VVLDE D+ML +GF++DVE IL ++
Sbjct: 299 RQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVESILSKIYNSEN 358
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+ Q+++FSATMP W+ ++ YL + L + L+ + + K + ++ ++ + +
Sbjct: 359 SEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLCPYESRAA 418
Query: 333 IIGQLITEHAKG--GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
+ +I + KG +CIVF + K+DAD L+ + A S +C LHG + Q +RE L FR
Sbjct: 419 TLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLHGSVPQDKRELVLQRFR 478
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
DG++ L+ T+VAARGLDVPNVDLV
Sbjct: 479 DGKYRTLLTTNVAARGLDVPNVDLV 503
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 106/170 (62%), Gaps = 3/170 (1%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S +I+ I+ L R IS+LFP+Q + GRD + ARTGTGKTLAF +P+++
Sbjct: 10 DFSNFNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPLVN 69
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRAL 218
+IK + R +P+ LVLAPTREL Q+ +F S + VYGG P Q AL
Sbjct: 70 SLIK--GQGSRPSSPVVLVLAPTRELVTQIATDFESISVHGIKVTSVYGGVPYRPQCDAL 127
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
G VVG PGRVIDL+++ L LS V+ VVLDE D+ML +GF++DVE+
Sbjct: 128 RQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVEI 177
>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase [Meiothermus silvanus DSM 9946]
gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
9946]
Length = 538
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/349 (40%), Positives = 203/349 (58%), Gaps = 14/349 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +++AAL +G + IQ + A++GRD++G+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFALRPEVLAALEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIA 60
Query: 159 DKI-IKFN-----EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
K+ F RGR P +L PTRELA QV E AP L + +YGGT
Sbjct: 61 HKLEAPFRGDSRVASRQRGRPPRAFILTPTRELALQVAGELAWVAPHLHVLPIYGGTGYG 120
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q L G D VV TPGR ID + + L+LS V+ VLDEAD+MLS+GF EDVE +L
Sbjct: 121 SQAEGLRRGADVVVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEKLLGA 180
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P +RQ+ +FSAT+P W + L +Y+++P+ V++V D + ++ + + +
Sbjct: 181 TPASRQTFLFSATVPSWAKRLAERYMRDPVHVNVVKDEQVSYEE----LALQAPLQTRLN 236
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +I +A + IVFT+TK + D LA + A+ P+HGD+SQ +RER L FR+
Sbjct: 237 TLTDVIFAYAP-ERTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRFRE 295
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERK--EVQFLSTQISRPGKS 438
G +L+ATDVAARGLD+P VDLV L K Q S + R G+S
Sbjct: 296 GTDTVLVATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRS 344
>gi|405978792|gb|EKC43154.1| Nucleolar RNA helicase 2 [Crassostrea gigas]
Length = 671
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 191/324 (58%), Gaps = 33/324 (10%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S +S V L +R ++ LFPIQ + G D+IG+ARTGTGKT+
Sbjct: 156 DFSNFRLSDVTVEKLKKRNVNYLFPIQYKTFDHVYNGEDVIGQARTGTGKTV-------- 207
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
+ + PTRELAKQV EF + L C YGGTP Q+RA+
Sbjct: 208 -----------------IAMVPTRELAKQVSDEFESISDGLSVACFYGGTPYEKQIRAIR 250
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-----P 274
G+D +VGTPGR+ D I++ L+ V+ VVLDE D+ML +GFAEDVE I+
Sbjct: 251 SGIDVLVGTPGRIKDHIEKGNLDFKGVRHVVLDEVDRMLDMGFAEDVETIISSAYNNGSG 310
Query: 275 QNRQSMMFSATMPPWIRSLTNKYL-KNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPS 332
+N Q+++FSAT+P W+ KY+ K+ L V LV + + + + +I +S +++PS
Sbjct: 311 ENPQTLLFSATLPSWVHDTARKYMNKDKLAKVSLVNSQENRTSTTVQHLAIRSSFWDRPS 370
Query: 333 IIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+IG ++ ++ K G+ I+F +TK++AD L+ + + LHGDI Q +RE L +FR+
Sbjct: 371 VIGDVLQVYSGKNGRAIIFNETKKEADNLSCSEYIKQDAHVLHGDIPQEKRETVLKSFRE 430
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+FN+L+ TDVAARGLD+P VDLV
Sbjct: 431 GKFNVLLTTDVAARGLDIPEVDLV 454
>gi|326499968|dbj|BAJ90819.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 121/185 (65%), Positives = 148/185 (80%), Gaps = 2/185 (1%)
Query: 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPT 182
+Q+AVL PA++GRD+I RA+TGTGKTLAFGIP++ +II+ +E GRGR P LVLAPT
Sbjct: 16 LQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQIIEQDEGRTPGRGRIPRALVLAPT 75
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI +L
Sbjct: 76 RELAKQVEKEIMESAPKLSTVCVYGGVSYNTQQNALSRGVDVVVGTPGRLIDLINGGSLQ 135
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302
L EV+++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W++ L+ +YL NPL
Sbjct: 136 LGEVRYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPSWVKKLSRRYLNNPL 195
Query: 303 TVDLV 307
T+DLV
Sbjct: 196 TIDLV 200
>gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
Length = 622
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 191/325 (58%), Gaps = 11/325 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S +I I+ L R I +LFP+Q + G+D + ARTGTGKTLAF +P+++
Sbjct: 10 DFSNFNIDDAIIKRLHARNIFELFPVQFKTYDAISSGKDAVVLARTGTGKTLAFSLPLVN 69
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRAL 218
++IK E +P+ LVLAPTREL Q+ +F + VYGG P Q AL
Sbjct: 70 QLIKRQESFKP--SPVVLVLAPTRELVTQIATDFESICVHGIKVTSVYGGVPYKPQCNAL 127
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR- 277
G VVG PGRVIDLI + L LS VQ VVLDE D+ML +GF++DVE IL + N
Sbjct: 128 RNGTHVVVGAPGRVIDLIDKGILKLSSVQHVVLDEVDRMLDMGFSKDVEKILADIYNNET 187
Query: 278 ----QSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
Q+++FSATMP W+ ++ YL N L + L+ + + K + ++ ++ + +
Sbjct: 188 SKKPQTLLFSATMPSWVSDISRNYLSNDALHLSLIDEQETKASTNVTHLALLCPYESRAA 247
Query: 333 IIGQLITEHAKG--GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFR 390
+ +I + K +CIVF + K+DAD LA + +C LHGD+ Q +RE L FR
Sbjct: 248 TLSDVIKVYCKSRESRCIVFCERKKDADELAASSVMPTDCHVLHGDVPQDKREFVLQKFR 307
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
DG++ L+ T+VAARGLDVP+VDLV
Sbjct: 308 DGKYRTLLTTNVAARGLDVPHVDLV 332
>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
DAL972]
Length = 632
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 199/335 (59%), Gaps = 12/335 (3%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
++ S G S+ ++S +V AL +GI LFP+Q E M+G D++ +ARTG+GKT
Sbjct: 37 NNGSAAVGRPFSEFNLSSGMVKALEAQGIVSLFPVQALTFEAIMRGEDVLVQARTGSGKT 96
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
LAFGIPI++K+ K RGR P ++ PTRELA QV + L +YGG
Sbjct: 97 LAFGIPIVEKLNKKEGPLARGRGPAAVIFCPTRELAIQVRDVLAGVSGDLVVAALYGGVA 156
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
S Q R L GVD VV TPGR D +++ L+ V+ V LDEAD ML +GF ED+E++L
Sbjct: 157 YSTQERVLFSGVDIVVATPGRAKDFLEKGTLHFERVKMVCLDEADHMLDIGFKEDIELLL 216
Query: 271 ERLPQN---------RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
+R+ + Q+++FSAT+P W+ + + KN +D+VG + A+ I Y
Sbjct: 217 QRVAEQNGSTPDEPKHQTLLFSATVPDWVHTCSF-ISKNKKFIDMVGQGAMRAANTIRFY 275
Query: 322 SIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQS 380
E S++ L+ ++ + G+ ++FT TK+D L+ K + + LHGD+ Q
Sbjct: 276 RRKCGFAEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTK-LDSQCLHGDMQQE 334
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
QRE T+ +FRD +F++LIATDVAARGLD+P VDLV
Sbjct: 335 QRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLV 369
>gi|90076020|dbj|BAE87690.1| unnamed protein product [Macaca fascicularis]
Length = 353
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 191/317 (60%), Gaps = 7/317 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 37 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 96
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 97 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 156
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 157 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 216
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 217 NPQTLLFSATCPHWVFNVAKKYMKSTCEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 276
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 277 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 336
Query: 394 FNILIATDVAARGLDVP 410
F +L+AT+VA + P
Sbjct: 337 FGVLVATNVACTWVRHP 353
>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax Sal-1]
gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
Length = 720
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 209/343 (60%), Gaps = 35/343 (10%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
+I+ +I L+ +GI+++ IQ P +GRD+IGR+ TG+GKTLAF +P+++K+ K
Sbjct: 132 EINPNIAKFLSSKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVEKLYKV 191
Query: 165 NEKHGRG--------------------------RNPLCLVLAPTRELAKQVEKEFHESAP 198
K GR +NP LVL PTREL+KQVE F E +
Sbjct: 192 --KMGRSGEGVSPSTPHLESANHFGGTNQPDDSKNPSILVLEPTRELSKQVENTFKEISQ 249
Query: 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
+ + + +YGG +Q L G++ + GTPGR+ID ++R L+L ++++VLDEAD+
Sbjct: 250 FYNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLERKNLSLQNIKYLVLDEADE 309
Query: 257 MLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
ML++GF D+E IL + + Q +++SAT P WI+ +++KY+KNP +D+V DS K +
Sbjct: 310 MLNLGFTHDLERILSYINLKEAQILLYSATTPSWIKDISSKYMKNPFFIDVV-DSSNKTS 368
Query: 316 DGISLYSIAT--SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEP 372
I +I T + EK ++ +I + GG+ I+FT+TK +AD L + KS +
Sbjct: 369 KNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSFAV 428
Query: 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
LHG+I+Q+ RE T+ FR G F ILIATD+AARGLD+ NVDLV
Sbjct: 429 LHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLV 471
>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD, partial [Actinomyces odontolyticus
F0309]
gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
Length = 502
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 137/333 (41%), Positives = 205/333 (61%), Gaps = 12/333 (3%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
D S K E LD + ++ IV AL +GI+ FPIQ L PA++ D+IG+A+TGT
Sbjct: 52 DISGKGEDLDEKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGT 111
Query: 148 GKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
GKTL FGIP+L+ +I +E+ P L++ PTREL KQV ++ E+A L T
Sbjct: 112 GKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTR 171
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL+ G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +G
Sbjct: 172 IVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLG 231
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISL 320
F DVE +L R+P+NR +M+FSATMP + +L +++ P + DQ + + +
Sbjct: 232 FLPDVETLLSRVPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQ 291
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQ 379
K ++ +++ + G+ ++F +TKR A RL + A+ + LHGD+ Q
Sbjct: 292 VIYRVHAMNKVEVVARILQAEGR-GRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQ 350
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
RE+ L AFR+G+ ++L+ATDVAARG+DV +V
Sbjct: 351 GAREQALRAFRNGKVDVLVATDVAARGIDVDDV 383
>gi|209882562|ref|XP_002142717.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558323|gb|EEA08368.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 667
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/357 (39%), Positives = 219/357 (61%), Gaps = 28/357 (7%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
S + + L +RGI++LFPIQ D++G+A+TGTGKTLAF +P+++++IK
Sbjct: 21 FSTETMEILKKRGINRLFPIQAKSFNYIFNKNDVLGKAKTGTGKTLAFVLPVIERLIKKG 80
Query: 166 EKHGR--GRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQMRALDYG 221
+ H GR PL LVL PTRELA+QV EF + + +YGG+P Q++ + G
Sbjct: 81 KFHTNEIGRKPLVLVLLPTRELAQQVSNEFELMKGNNRYKVVSIYGGSPEYPQIQEVKKG 140
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL---------ER 272
VD +VG PGRV+D I+RN LN+S++ ++LDEAD+ML +GF E V+ ++ E
Sbjct: 141 VDIIVGCPGRVLDFIERNILNVSKINVLILDEADKMLEMGFKEYVDKVIDFVKKQTSEEN 200
Query: 273 LPQNR--QSMMFSATMPPWIRSLTNKYLKN-PLTVDLVG---DSDQKLADG----ISLYS 322
+NR Q ++FSAT+P WI+ + N+ + N +TVD+ D ++ +D I +
Sbjct: 201 TDKNRRFQILLFSATVPSWIKKIVNEIMSNDTVTVDVTNISVDGNEDSSDSGNTRIRHLA 260
Query: 323 IATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQ 381
I + ++ +++ +IT +A GKCI+FT+TK+ A+ ++ S C+ LHGDI QSQ
Sbjct: 261 IQCAYPQRTALLKDIITMYAGIHGKCIIFTETKQTANEISMRSTISDMCQVLHGDIQQSQ 320
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
RE L AF++GR+ L+ATDVAARGL + +V VV++ + + T I R G++
Sbjct: 321 REIALQAFKEGRYRCLVATDVAARGLHIDDV----AVVIQLAPPRDIDTYIHRAGRT 373
>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
17982]
gi|153799192|gb|EDN81612.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 581
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/337 (40%), Positives = 208/337 (61%), Gaps = 20/337 (5%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
D S K E LD + ++ IV AL +GI+ FPIQ L PA++ D+IG+A+TGT
Sbjct: 52 DISGKGEDLDKKSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGT 111
Query: 148 GKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
GKTL FGIP+L+ +I +E+ P L++ PTREL KQV ++ E+A L T
Sbjct: 112 GKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTR 171
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL+ G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +G
Sbjct: 172 IVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLG 231
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F DVE +L R+P+NR +M+FSATMP + +L +++ P + DQ ++
Sbjct: 232 FLPDVETLLSRVPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQ----TVN 287
Query: 322 SIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHG 375
++ +Y K ++ +++ + G+ ++F +TKR A RL + A+ + LHG
Sbjct: 288 TVKQVIYRVHAMNKVEVVARILQAEGR-GRTVIFCRTKRTAARLGEDLTARGFAVGSLHG 346
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
D+ Q RE+ L AFR+G+ ++L+ATDVAARG+DV +V
Sbjct: 347 DLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDV 383
>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 538
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 206/347 (59%), Gaps = 11/347 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DIVA+L+ GI FPIQ L A+ G D+IG+A+TGTGKTL FGIP L +
Sbjct: 28 FADLKVREDIVASLSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPALQR 87
Query: 161 IIKFNEKHGRGRN----PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ 214
+++ +K P L++APTRELA QV + +++ ++ +YGG P Q
Sbjct: 88 VVREGDKGYEDLEFPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYEEQ 147
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL G D +VGTPGR+IDL ++ LNL +V+ VVLDEAD+ML +GF DVE IL LP
Sbjct: 148 INALKAGTDVIVGTPGRLIDLNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAALP 207
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV--GDSDQKLADGISLYSIATSMYEKPS 332
RQ+M+FSATMP + ++ +Y+ P + GD D I +K
Sbjct: 208 PVRQAMLFSATMPGAVITMARRYMTRPTHIRAQDPGDDDSLTKRNIRQLIYRAHNMDKDE 267
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++ +L+ + GK I+FTQTKR A RL+ + + +N LHGD+ Q RE+ L AFR
Sbjct: 268 MVARLLQAEGR-GKTIIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKAFRS 326
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
G+ IL+ATDVAARG+DV +V V + E +L ++ R G++
Sbjct: 327 GKVEILVATDVAARGIDVDDVTHVVNLQCPDDENTYLH-RVGRTGRA 372
>gi|399527936|ref|ZP_10767613.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
gi|398361526|gb|EJN45278.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
Length = 588
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/337 (40%), Positives = 207/337 (61%), Gaps = 20/337 (5%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
D S K E LD + ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGT
Sbjct: 52 DISGKGEDLDKKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGT 111
Query: 148 GKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
GKTL FGIP+L+ +I +E+ P L++ PTREL KQV ++ E+A L T
Sbjct: 112 GKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTR 171
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL+ G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +G
Sbjct: 172 IVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLG 231
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F DVE +L R+P+NR +M+FSATMP + +L +++ P + DQ ++
Sbjct: 232 FLPDVETLLSRVPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQ----TVN 287
Query: 322 SIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHG 375
++ +Y K ++ +++ + G+ ++F +TKR A RL + A+ + LHG
Sbjct: 288 TVKQVIYRVHAMNKVEVVARILQAEGR-GRTVIFCRTKRTAARLGEDLTARGFAVGSLHG 346
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
D+ Q RE+ L AFR+G+ ++L+ATDVAARG+DV +V
Sbjct: 347 DLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDV 383
>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
Length = 722
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 209/342 (61%), Gaps = 32/342 (9%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
+I+ +I LA +GI+++ IQ P +GRD+IGR+ TG+GKTLAF +P+++K+ K
Sbjct: 133 EINPNIAKFLASKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVEKLYKV 192
Query: 165 --------------------NEKHGRG-----RNPLCLVLAPTRELAKQVEKEFHESAP- 198
N GR +NP LVL PTREL+KQVE F E +
Sbjct: 193 KMGRSGEGVTSSTPHMEKSANAFDGRNQSDDNKNPSILVLEPTRELSKQVENTFKEISQF 252
Query: 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
+ + + +YGG +Q L G++ + GTPGR+ID +++ L+L ++++VLDEAD+M
Sbjct: 253 YNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLEKKNLSLQNIKYLVLDEADEM 312
Query: 258 LSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
L++GF D+E IL + + Q +++SAT P W++ ++++Y+KNP +D+V DS K +
Sbjct: 313 LNLGFTHDLERILSYINLKEAQILLYSATTPSWVKDISSRYMKNPFFIDVV-DSSNKTSK 371
Query: 317 GISLYSIAT--SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPL 373
I +I T + EK ++ +I + GG+ I+FT+TK +AD L + KS + L
Sbjct: 372 NIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSFAVL 431
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
HG+I+Q+ RE T+ FR G F ILIATD+AARGLD+ NVDLV
Sbjct: 432 HGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLV 473
>gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
Length = 482
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 211/351 (60%), Gaps = 12/351 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I A L R+GI+ F IQ+ L A+QG D+IG+ARTG+GKTLAFGIP++ + + ++
Sbjct: 4 EICAPLERKGITTPFAIQEMTLSVALQGTDLIGQARTGSGKTLAFGIPVVQRSVSPKDRD 63
Query: 169 ----GRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQMRALDYGV 222
+G+ P L++APTRELA QV E L + VYGG Q+ AL+ GV
Sbjct: 64 YIDLPQGK-PQALIVAPTRELAMQVSAEISMISEDRGLRVLTVYGGAGYEPQIEALEKGV 122
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGR+IDL R L+LS V +VLDEAD+ML +GF DVE ++ P+ RQ+++F
Sbjct: 123 DIVVGTPGRLIDLANRKVLDLSHVHALVLDEADEMLDLGFLPDVEKLVTLTPETRQTLLF 182
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP I +L Y+++P+ + ++++ + + +KP +IG+L+ +
Sbjct: 183 SATMPGAIVALARSYMRHPMNIRAESAAERETVPATAQFVYQAHDLDKPEMIGRLL-QCE 241
Query: 343 KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
K +VF +TKR A R+A +A + + PLHGD+ Q+ RER + FRDG+ +L+ATD
Sbjct: 242 DHDKVVVFARTKRQAQRVADDLAERGFPASPLHGDMQQAARERVMQKFRDGKVEVLVATD 301
Query: 402 VAARGLDVPNVDLVELVVLERKEVQFLST--QISRPGKSRVLSEMLD-ADL 449
VAARG+DV V V E ++ + R G S V ++D ADL
Sbjct: 302 VAARGIDVTGVSHVVNYTTPDDEKTYVHRIGRTGRAGASGVAVTLVDWADL 352
>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 526
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 201/322 (62%), Gaps = 22/322 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L L +S+ ++ AL G + PIQ + +QG+D+IG+A+TGTGKT AFG+PI+
Sbjct: 6 LTFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIV 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
++++ R LVL PTRELA QV +E + + TI +YGG I Q+R
Sbjct: 66 ERLVPGQ------RAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIR 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+L +GVD V+GTPGR++D + R+ L+LS+V+ VVLDEAD+ML +GF ED+E IL+ P
Sbjct: 120 SLRFGVDVVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAE 179
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP IR L +Y+++P+T+ + Q I Y +PS +
Sbjct: 180 RQTLLFSATMPPEIRRLAGRYMRDPITISVT--PQQLTVPQIDQYFCEV----RPSFKTE 233
Query: 337 LIT-----EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+T E+ + G C F +TK+ D L A+ A+ Y E +HGD++Q+QR R +S F+
Sbjct: 234 ALTRILDIENVERGIC--FCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFK 291
Query: 391 DGRFNILIATDVAARGLDVPNV 412
+G +L+ATDVAARGLD+ +V
Sbjct: 292 EGYIELLVATDVAARGLDISDV 313
>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823346|ref|YP_007416511.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448276843|gb|AGE36267.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
Length = 778
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 209/338 (61%), Gaps = 16/338 (4%)
Query: 82 SAVDDYVAYDDSSK---DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD 138
S+ DD VA D+ + D+G L +S ++ A+ G +K PIQ+ + M G D
Sbjct: 111 SSQDDVVAQDNEQENKDDDGAGFGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGED 170
Query: 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198
++G A+TGTGKT AF +PIL ++ + + R P LVLAPTRELA QV + F + A
Sbjct: 171 VVGLAQTGTGKTAAFALPILSRL------NLKSRKPQALVLAPTRELALQVAESFEDFAE 224
Query: 199 SL---DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255
+ + + +YGG P Q+ L G VVGTPGRVID +++ +L++SE++F+VLDEAD
Sbjct: 225 KMGGVNILPIYGGQPYGAQLSGLRRGAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEAD 284
Query: 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ML++GF EDVE ILE P+++Q +FSATMP IR L+ +YL +P V + S Q+ A
Sbjct: 285 EMLNMGFQEDVERILEDTPEDKQVALFSATMPSAIRHLSKRYLNSPQEVTV--KSTQRTA 342
Query: 316 DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLH 374
+ I + EK + +++ E I+F +TK D + LA + A+ Y ++
Sbjct: 343 ENIEQDYLIVHHREKLDALTRIL-EVTDFDAMIMFVRTKNDTEELAERLRARGYEAAAIN 401
Query: 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
GDI+Q+QRERT+ +DGR +IL+ATDVAARGLDV +
Sbjct: 402 GDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERI 439
>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
Length = 619
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 214/363 (58%), Gaps = 23/363 (6%)
Query: 64 AISRPLDFKSSIAWQHAQSAVDDYVAYD----------DSSKDEGLDISKLDISQDIVAA 113
++ P DF S + ++Q D A + DS+ D + L + + I+ A
Sbjct: 10 GVNEPEDFNKSESQDNSQGVTKDTRAANTSEDTGAESQDSANDNSQGFAHLGLPEKILEA 69
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
+A+ G +K PIQ+ + M+GRD++G A+TGTGKT AF +P+L +I + R+
Sbjct: 70 VAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQI------DTKARH 123
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPG 230
P LVLAPTRELA QV F A SL + + +YGG Q+ L G +VGTPG
Sbjct: 124 PQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGAQVIVGTPG 183
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290
RVID +++ +L+LS++QF+VLDEAD+ML++GF EDVE ILE P +Q +FSATMP I
Sbjct: 184 RVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALFSATMPNAI 243
Query: 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVF 350
R L+ +YL NP V + S+++ D I+ + K +++ E IVF
Sbjct: 244 RRLSKQYLDNPAEVTV--KSERRTNDNITQRFLLIPHRAKMDAFTRIL-EVINYDAIIVF 300
Query: 351 TQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
+TK + + +A + + ++ ++GDI+Q+QRERT+ +DGR +IL+ATDVAARGLDV
Sbjct: 301 CRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDV 360
Query: 410 PNV 412
+
Sbjct: 361 ERI 363
>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 544
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/325 (42%), Positives = 202/325 (62%), Gaps = 18/325 (5%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
SK E L++ + I+AAL G + PIQK + A++G D+IG+A+TGTGKT A
Sbjct: 13 ESKPEITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAA 72
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTP 210
FGIPI+ KI NEK R+ LV++PTREL QV E + + + + VYGG P
Sbjct: 73 FGIPIIQKI---NEKD---RHIQALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQP 126
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+R+L G+ V+GTPGR++D I+R ++L V F+VLDEAD+ML +GF +D+E I+
Sbjct: 127 IERQIRSLKRGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENII 186
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
+ +P RQ+M+FSATMP I S++ KY++ P V + + ++ +I YE
Sbjct: 187 KNVPPERQTMLFSATMPRPILSISKKYMRAPKVVAIHKEV-------VTAPTIDQYYYET 239
Query: 331 PSIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLS 387
+ L I + K I+F +TK+ D L A+A + Y E LHGD+SQ+QR+R +
Sbjct: 240 RDKVDGLCRILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMK 299
Query: 388 AFRDGRFNILIATDVAARGLDVPNV 412
FR G+ +IL+ATDVAARGLD+ N+
Sbjct: 300 KFRSGQVDILVATDVAARGLDIDNI 324
>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 619
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 214/363 (58%), Gaps = 23/363 (6%)
Query: 64 AISRPLDFKSSIAWQHAQSAVDDYVAYD----------DSSKDEGLDISKLDISQDIVAA 113
++ P DF S + ++Q D A + DS+ D + L + + I+ A
Sbjct: 10 GVNEPEDFNKSESQDNSQGVTKDTRAANTSEDTGAESQDSANDNSQGFAHLGLPEKILEA 69
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
+A+ G +K PIQ+ + M+GRD++G A+TGTGKT AF +P+L +I + R+
Sbjct: 70 VAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQI------DTKARH 123
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPG 230
P LVLAPTRELA QV F A SL + + +YGG Q+ L G +VGTPG
Sbjct: 124 PQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGAQVIVGTPG 183
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290
RVID +++ +L+LS++QF+VLDEAD+ML++GF EDVE ILE P +Q +FSATMP I
Sbjct: 184 RVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALFSATMPNAI 243
Query: 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVF 350
R L+ +YL NP V + S+++ D I+ + K +++ E IVF
Sbjct: 244 RRLSKQYLDNPAEVTV--KSERRTNDNITQRFLLIPHRAKMDAFTRIL-EVINYDAIIVF 300
Query: 351 TQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
+TK + + +A + + ++ ++GDI+Q+QRERT+ +DGR +IL+ATDVAARGLDV
Sbjct: 301 CRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDV 360
Query: 410 PNV 412
+
Sbjct: 361 ERI 363
>gi|374307851|ref|YP_005054282.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
Length = 539
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 210/341 (61%), Gaps = 14/341 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ +IS++I AL + G + IQ+ + A +G+D+IG+++TGTGKT AFGIPILD I
Sbjct: 5 TEFNISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPILDNI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
++ N + LV+ PTRELA QV EF + + + I VYGG I Q++ L
Sbjct: 65 LQNNNHQIQ-----ALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLK 119
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
V V+GTPGR++D I+R + L V+FVVLDEAD+ML +GF ED+E IL + RQ+
Sbjct: 120 KKVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSEERQT 179
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMP I SL+ KYLKNP + + + D I + +K ++ +++
Sbjct: 180 MLFSATMPAEILSLSKKYLKNPEMIRVKNKT--MTVDQIEQIYMKVKNADKSEVLSRILQ 237
Query: 340 -EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E +K K I+F TK+ D L M + Y E LHGD+ Q +R+ L+ FR+G+ ++L
Sbjct: 238 LESSK--KAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQISML 295
Query: 398 IATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
IATDVAARGLD+ +VDLV L +E Q++ +I R G++
Sbjct: 296 IATDVAARGLDIRDVDLVINYDLPIEEEQYVH-RIGRTGRA 335
>gi|381162701|ref|ZP_09871931.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|418460916|ref|ZP_13032000.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|359739012|gb|EHK87888.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|379254606|gb|EHY88532.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 575
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 196/313 (62%), Gaps = 8/313 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+L + +++ AL+ G + PIQ+A + P + G D++G+A TGTGKT AF +P+L +
Sbjct: 23 FGELGLRPELLTALSDLGYEEPTPIQRAAIPPLLDGADVVGQAATGTGKTAAFSLPVLHR 82
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRAL 218
I + RG P LVL PTRELA QV + + L + VYGG P+ Q+R+L
Sbjct: 83 IADVEQ---RGVAPSALVLVPTRELAAQVCEAMYRYGHRLGIRVVPVYGGQPMGRQLRSL 139
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ GVD VV TPGR +D + R +L+LS ++ VVLDEAD+ML +GFAED++ ILER P +RQ
Sbjct: 140 ETGVDVVVATPGRALDHLSRGSLDLSTLRMVVLDEADEMLDMGFAEDIDAILERTPDDRQ 199
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSIIGQL 337
+M+FSATMPP I L +YL+ P ++L +S + A ++ + KP+ +G++
Sbjct: 200 TMLFSATMPPRIAGLVRRYLREPRRIELSRAESMSEDAASVTQAAYVVPRGHKPAALGRV 259
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ A +VF +T+ + DRL M A+ Y E LHG + Q+QR+R + R G ++
Sbjct: 260 LDIEAPEA-AVVFCRTREEVDRLTETMNARGYRAEALHGGMDQTQRQRVVGRLRAGTADL 318
Query: 397 LIATDVAARGLDV 409
++ATDVAARGLD+
Sbjct: 319 VVATDVAARGLDI 331
>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
Length = 459
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 195/327 (59%), Gaps = 22/327 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + IV +L GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L +
Sbjct: 6 FADLGVEAPIVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQR 65
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA----PSLDTICVYGGTPISHQMR 216
I+ + +GR P LV+ PTRELA QV + ++ PS+ + +YGG Q+R
Sbjct: 66 ILDEQSRE-QGRAPRALVVVPTRELAHQVADDLRVASRTFSPSI--VTIYGGKDFEPQIR 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G D VVGTPGR++DL R LN S + V DEAD+ML +GF DVE I+ LP
Sbjct: 123 ALKDGADVVVGTPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAALPAK 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-------E 329
RQ+M+FSATMP + +L +Y+ P + SD S S+ T Y +
Sbjct: 183 RQTMLFSATMPGQVIALARRYMTQPTHIRATQASD------TSTTSVNTKQYVYRAHSMD 236
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
K ++G+++ + G+ I+F +TKR ADRL + A+ + + LHGD++Q RE+ L
Sbjct: 237 KTELVGRILRAEGR-GRTIIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKR 295
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLV 415
FRDG ++L+ATDVAARG+D+ +V V
Sbjct: 296 FRDGTTDVLVATDVAARGIDIDDVTHV 322
>gi|68063293|ref|XP_673656.1| ATP-dependent helicase [Plasmodium berghei strain ANKA]
gi|56491666|emb|CAH95329.1| ATP-dependent helicase, putative [Plasmodium berghei]
Length = 525
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 205/343 (59%), Gaps = 34/343 (9%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-- 163
I+Q IV L +GI + IQ P +G D+IGR+ TG+GKTLAF +P+++K+ K
Sbjct: 7 INQKIVDFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTLAFALPLVEKLYKNM 66
Query: 164 -------------------FNEKHGR------GRNPLCLVLAPTRELAKQVEKEFHESAP 198
+E H + P LVL PTREL+KQVE F E +
Sbjct: 67 ESKKKIIKNKSNEINSIQHLSEGHKNENTDSMDKYPYILVLEPTRELSKQVETTFKEISQ 126
Query: 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
+ + + +YGG ++Q L G+ + GTPGR+ID I++ L+L +++VVLDEAD+
Sbjct: 127 FYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVVLDEADE 186
Query: 257 MLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
ML++GF D+E IL + ++ Q +++SAT P WI+ +++KYLKNP+ +D++ ++ K +
Sbjct: 187 MLNLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVI-NTINKTS 245
Query: 316 DGISLYSIAT--SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY-NCEP 372
I +I T + EK ++ +I + GG+ I+FT+TK +AD L + +Y
Sbjct: 246 KTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFNYLTFSV 305
Query: 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
LHG+I+QS RE T+ FR G F +LIATD+AARGLD+ NVDLV
Sbjct: 306 LHGNIAQSTREHTMQRFRSGMFQVLIATDIAARGLDISNVDLV 348
>gi|340356606|ref|ZP_08679248.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
gi|339620533|gb|EGQ25102.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
Length = 526
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 137/320 (42%), Positives = 197/320 (61%), Gaps = 16/320 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L+IS+ AL R G + PIQ+ + M+GRD+IG+A+TGTGKT AFGIPI++K
Sbjct: 29 FSELNISETTQNALLRMGFEEATPIQEGTITFGMEGRDVIGQAQTGTGKTAAFGIPIIEK 88
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ +NP LV+APTRELA QV +E ++ + VYGG I Q+R
Sbjct: 89 L--------DPKNPAVQALVIAPTRELAIQVSEEIYKVGYGSRAKVLSVYGGQEIGRQIR 140
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL + VVGTPGR++D I R L L VQ +VLDEAD+ML++GF ED+ IL +P
Sbjct: 141 ALRNNPNIVVGTPGRILDHINRKTLKLDNVQTLVLDEADEMLNMGFIEDINTILASVPAE 200
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP IR + ++KNP V + S + + I + + EK ++ +
Sbjct: 201 RQTLLFSATMPAPIRKIAETFMKNPEIVKI--KSKEMTVENIEQFFVKAHEREKFDVLSR 258
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ H + IVF +TKR D LAHA++ + Y E +HGD++Q++R L F+D + +
Sbjct: 259 LLNVH-QPELAIVFGRTKRRVDELAHALSIRGYLAEGIHGDLTQAKRMSVLRQFKDNKID 317
Query: 396 ILIATDVAARGLDVPNVDLV 415
+L+ATDVAARGLD+ V V
Sbjct: 318 VLVATDVAARGLDISGVTHV 337
>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
C3-41]
Length = 508
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 202/316 (63%), Gaps = 12/316 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNRPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPSER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + ++++P V + + + D I Y + ++ EK ++ +L
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSAEREKFDVLSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ H + I+F +TKR D LA A++ + Y E +HGD+SQ++R L F++ + +I
Sbjct: 235 LNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDI 293
Query: 397 LIATDVAARGLDVPNV 412
L+ATDVAARGLD+ V
Sbjct: 294 LVATDVAARGLDISGV 309
>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
Length = 561
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 197/324 (60%), Gaps = 15/324 (4%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ D+ + L + +++ AL+ G + PIQ+ + P ++GRD++G+A TGTGKT A
Sbjct: 4 NTTDDTSSFADLTLRPELLHALSGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAA 63
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
F +P+L ++ + G G P+ LVL PTRELA QV + FH L + +YGG P
Sbjct: 64 FALPVLQRMTR----DGGGGEPMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQP 119
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+RAL GVD VV TPGR +D I R L L +++ VVLDEAD+ML +GFAED+E IL
Sbjct: 120 IGRQLRALQQGVDIVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAIL 179
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG----ISLYSIATS 326
+ P+NRQ+++FSATMPP I + ++L +P+ +++ + A G + +
Sbjct: 180 QETPENRQTVLFSATMPPRINGIARRHLNDPVRIEM---GRETTAPGEAPLVRQTAYVVP 236
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
KP+ +G+++ A IVF +T+ + D+L + + Y E LHG + Q QR+R
Sbjct: 237 RAHKPAALGRVLDVEAPTA-AIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRV 295
Query: 386 LSAFRDGRFNILIATDVAARGLDV 409
+ R G ++L+ATDVAARGLD+
Sbjct: 296 MGRLRTGTADLLVATDVAARGLDI 319
>gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 582
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 208/344 (60%), Gaps = 9/344 (2%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
AQ+A D + + + + QDI ALA GI FPIQ+ L A+ G D+
Sbjct: 4 AQNATTDEAQPSSTPQSSPKSFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDI 63
Query: 140 IGRARTGTGKTLAFGIPILDKII-KFNEKHG---RGRNPLCLVLAPTRELAKQVEKEFHE 195
IG+A+TGTGKTL FG+P + +++ + +++ G + P L+L PTRELA QV +
Sbjct: 64 IGQAKTGTGKTLGFGLPTIQRVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAV 123
Query: 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
++ + +YGG P Q+ L G++ VVGTPGR+IDL + AL L++V+ VVLDE
Sbjct: 124 ASKLRNARVATLYGGVPYEPQVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDE 183
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ- 312
AD+ML +GF VE I+ LP +RQ+M+FSATMP + ++ KY+ P+ + D
Sbjct: 184 ADEMLDLGFLPSVEKIMGYLPTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHA 243
Query: 313 KLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCE 371
K I +K ++G+++ H + G+ ++FT+TKRDA R+A + A+ +
Sbjct: 244 KTKASIRQVVYRVHHMDKDEMLGRILRAHGR-GRTVIFTKTKRDAARVADELIARGFAAA 302
Query: 372 PLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
PLHGD++Q RE+ L AFR+G+ +IL+ATDVAARG+DV +V V
Sbjct: 303 PLHGDLNQGAREQALRAFRNGKVDILVATDVAARGIDVEDVTHV 346
>gi|395237134|ref|ZP_10415233.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|423351003|ref|ZP_17328655.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
gi|394487633|emb|CCI83321.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|404387055|gb|EJZ82184.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
Length = 704
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 214/351 (60%), Gaps = 14/351 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S +DEG L IS++++AA+ + G +K PIQ + M GRD++G A+TGTGKT
Sbjct: 92 ESGEDEGPGFESLGISEEMLAAVKKAGFTKPSPIQAETIPLLMAGRDVVGLAQTGTGKTA 151
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGG 208
AF +P+L K+ + R P LVLAPTRELA QV F E A L+ + VYGG
Sbjct: 152 AFALPVLSKV------DLKARTPQALVLAPTRELAAQVADSFQEFAGDLKGLEVLPVYGG 205
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGR+ID +KR +L++SE++++VLDEAD+ML++GF EDVE
Sbjct: 206 QSYGFQLSGLRRGAQIIVGTPGRIIDHLKRGSLDISELKYLVLDEADEMLNMGFQEDVER 265
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
ILE P+ +Q +FSATMP IR ++ +YL NP V + + +K I+ I
Sbjct: 266 ILEDTPEAKQVALFSATMPAGIRKISQQYLTNPAEVTV--KTREKTNTNITQRWIFVPHR 323
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
+K + +++ G IVF +TK + + +A A+ A ++ ++GDI+Q+QRERT+
Sbjct: 324 DKLQALVRILEVTDVDG-MIVFVRTKSETEEVADALRAAGFSAAAINGDIAQAQRERTVE 382
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+ GR +IL+ATDVAARGLDV + V + R+ ++ +I R G++
Sbjct: 383 QLKSGRLDILVATDVAARGLDVERISHVVNFDIPREAESYVH-RIGRTGRA 432
>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
Length = 507
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 202/316 (63%), Gaps = 12/316 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + ++++P V + + + D I Y + ++ EK ++ +L
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSAEREKFDVLSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ H + I+F +TKR D LA A++ + Y E +HGD+SQ++R L F++ + +I
Sbjct: 235 LNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDI 293
Query: 397 LIATDVAARGLDVPNV 412
L+ATDVAARGLD+ V
Sbjct: 294 LVATDVAARGLDISGV 309
>gi|424736339|ref|ZP_18164799.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
gi|422949942|gb|EKU44315.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
Length = 507
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 202/316 (63%), Gaps = 12/316 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + ++++P V + + + D I Y + ++ EK ++ +L
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSAEREKFDVLSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ H + I+F +TKR D LA A++ + Y E +HGD+SQ++R L F++ + +I
Sbjct: 235 LNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDI 293
Query: 397 LIATDVAARGLDVPNV 412
L+ATDVAARGLD+ V
Sbjct: 294 LVATDVAARGLDISGV 309
>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
Length = 513
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 202/316 (63%), Gaps = 12/316 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + ++++P V + + + D I Y + ++ EK ++ +L
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSAEREKFDVLSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ H + I+F +TKR D LA A++ + Y E +HGD+SQ++R L F++ + +I
Sbjct: 235 LNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDI 293
Query: 397 LIATDVAARGLDVPNV 412
L+ATDVAARGLD+ V
Sbjct: 294 LVATDVAARGLDISGV 309
>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
gi|357051322|ref|ZP_09112516.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
gi|355380144|gb|EHG27289.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
Length = 502
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/317 (42%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ L++S +++ ++ R G + PIQ+A + A+QGRD+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALQGRDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E + + VYGG I Q+R
Sbjct: 61 EKIDPANHQL------QGLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+S+ K++KNP V + + + AD I Y + + YEK I+ +
Sbjct: 175 RQTLLFSATMPPAIKSIGVKFMKNPEHVQI--KAKEMTADLIDQYYVRSKDYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G +
Sbjct: 233 LLDVQTP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|296084100|emb|CBI24488.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/291 (45%), Positives = 186/291 (63%), Gaps = 12/291 (4%)
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQV 189
+ G D++GRARTG GKTLAF +PIL+ +I + + K G GR P LVL PTRELA QV
Sbjct: 7 LDGSDLVGRARTGQGKTLAFVLPILESLINGPNRGSRKTGYGRPPCVLVLLPTRELATQV 66
Query: 190 EKEF--HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
+F + A L + C+YGG P Q L GVD VVGTPGR+ D I+R ++ S ++
Sbjct: 67 YADFDVYGGAIGLTSCCLYGGAPYQAQEIKLKRGVDIVVGTPGRIKDHIERGNIDFSSLK 126
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLP--QNRQSMMFSATMPPWIRSLTNKYLKNPL-TV 304
F VLDEAD+ML +GF EDVE+IL ++ Q+++FSAT+P W++ +++++LK L T
Sbjct: 127 FRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPGWVKEISSRFLKPTLKTA 186
Query: 305 DLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364
DLVG+ K + + + S + +I +I ++ GG+ I+FT+TK A LA +
Sbjct: 187 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSASELAGLL 246
Query: 365 AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
LHGDI QSQRE TLS FR G+F L+AT+VAARGLD+ +V L+
Sbjct: 247 P---GARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLI 294
>gi|449667537|ref|XP_002167666.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 543
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/278 (46%), Positives = 186/278 (66%), Gaps = 7/278 (2%)
Query: 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203
RTGTGKTL F +P+L+K+ + + R ++PL L LAPTRELA Q+ KE + P TI
Sbjct: 4 RTGTGKTLGFALPVLEKLKNIDSEQKR-KSPLVLTLAPTRELAIQICKEVEKYKPRQMTI 62
Query: 204 -CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
C YGG P Q + L G+D +VGTPGR++D I + L++S++Q+V+LDEAD+M+ +GF
Sbjct: 63 SCFYGGAPYDKQEQELRNGIDFLVGTPGRILDHINKGRLDVSKLQYVILDEADRMMDMGF 122
Query: 263 AEDVEVILER--LPQNR-QSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGI 318
E +E IL N+ Q+++FSAT+P W++ + KYL KN DL+G K A +
Sbjct: 123 QESMEEILSYAYTEDNKPQTLLFSATVPAWLQKNSEKYLTKNLKKFDLIGRDKNKGATTV 182
Query: 319 SLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDI 377
+I + +++PS I +I +++ K GK I+FT TK++A+ LA + + + LHGDI
Sbjct: 183 EHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIFTSTKQEANELALNSVINMDSQVLHGDI 242
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
Q QRE TL +FR+G+FN LIATDVAARGLD+P VDLV
Sbjct: 243 QQKQRELTLQSFRNGKFNCLIATDVAARGLDIPEVDLV 280
>gi|396583527|ref|ZP_10484060.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
gi|395549007|gb|EJG16160.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
Length = 615
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 201/324 (62%), Gaps = 17/324 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+L+
Sbjct: 73 FADFGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLED 132
Query: 161 IIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+I +E+ P L++ PTREL KQV ++ E+A L T + +YGG Q
Sbjct: 133 VIAPDEEGYEDLLNPNQPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQ 192
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE +L R+P
Sbjct: 193 IEALQRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGRVP 252
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----E 329
+NR +M+FSATMP + +L +++ +P + DQ ++ ++ +Y
Sbjct: 253 ENRHTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQ----TVNTVKQVIYRVHAMN 308
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
K +I +++ + G+ ++F +TKR A RL + A+ + LHGD+ Q RE+ L A
Sbjct: 309 KVEVISRILQAEGR-GRTVIFCRTKRTAARLGEDLTARGFAVGALHGDLGQGAREQALRA 367
Query: 389 FRDGRFNILIATDVAARGLDVPNV 412
FR+G+ ++L+ATDVAARG+DV +V
Sbjct: 368 FRNGKVDVLVATDVAARGIDVDDV 391
>gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
Length = 580
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 207/344 (60%), Gaps = 9/344 (2%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
AQ+A D + + + QDI ALA GI FPIQ+ L A+ G D+
Sbjct: 4 AQNATTDEAQPSSVPQSSPKSFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDI 63
Query: 140 IGRARTGTGKTLAFGIPILDKII-KFNEKHG---RGRNPLCLVLAPTRELAKQVEKEFHE 195
IG+A+TGTGKTL FG+P + +++ + +++ G + P L+L PTRELA QV +
Sbjct: 64 IGQAKTGTGKTLGFGLPTIQRVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAV 123
Query: 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
++ + +YGG P Q+ L G++ VVGTPGR+IDL + AL L++V+ VVLDE
Sbjct: 124 ASKLRNARVATLYGGVPYEPQVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDE 183
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ- 312
AD+ML +GF VE I+ LP +RQ+M+FSATMP + ++ KY+ P+ + D
Sbjct: 184 ADEMLDLGFLPSVEKIMGYLPTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHA 243
Query: 313 KLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCE 371
K I +K ++G+++ H + G+ ++FT+TKRDA R+A + A+ +
Sbjct: 244 KTKASIRQVVYRVHHMDKDEMLGRILRAHGR-GRTVIFTKTKRDAARVADELIARGFAAA 302
Query: 372 PLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
PLHGD++Q RE+ L AFR+G+ +IL+ATDVAARG+DV +V V
Sbjct: 303 PLHGDLNQGAREQALRAFRNGKVDILVATDVAARGIDVEDVTHV 346
>gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 561
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 196/322 (60%), Gaps = 8/322 (2%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+ D+ + L + +++ AL+ G + PIQ+ + P +GRD++G+A TGTGKT
Sbjct: 3 DAPDDDRTSFADLGLRPELLRALSGLGYEEPTPIQREAIVPLTEGRDLLGQAATGTGKTA 62
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGT 209
AF +P+L+++ + + RG P LVL PTRELA QV + H L + +YGG
Sbjct: 63 AFALPVLERLAQVEK---RGDAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQ 119
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
PI Q+R L+ GVD VV TPGR +D + R LNL ++Q VVLDEAD+ML +GFAED++ I
Sbjct: 120 PIGRQLRVLERGVDVVVATPGRAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTI 179
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD-SDQKLADGISLYSIATSMY 328
L P+ RQ+++FSATMPP I L ++L P + + + ++ A + +
Sbjct: 180 LAETPKQRQTVLFSATMPPRIDKLARQHLTEPARITINQERAEPGEAPRVRQVAYVVPRA 239
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
KP+ +G+++ A IVF +T+ + D+L + + Y E LHG ISQ QR+R ++
Sbjct: 240 HKPAALGRVLDVEAPTA-AIVFCRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMA 298
Query: 388 AFRDGRFNILIATDVAARGLDV 409
R+G ++L+ATDVAARGLDV
Sbjct: 299 RLRNGTADLLVATDVAARGLDV 320
>gi|405982153|ref|ZP_11040477.1| hypothetical protein HMPREF9240_01483 [Actinomyces neuii BVS029A5]
gi|404390944|gb|EJZ86010.1| hypothetical protein HMPREF9240_01483 [Actinomyces neuii BVS029A5]
Length = 515
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/343 (41%), Positives = 207/343 (60%), Gaps = 24/343 (6%)
Query: 88 VAYDDSSKDEGLDISK-----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
V D + + E L++ K +S I ALA GI+ FPIQ L A++G D+IG+
Sbjct: 20 VQADITDEGEALELHKKTFADFGVSASICQALAEEGITHPFPIQALTLPVALKGNDIIGQ 79
Query: 143 ARTGTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198
A+TGTGKTL FGIP L++I+ E K P L++ PTRELAKQV ++ +A
Sbjct: 80 AKTGTGKTLGFGIPALEQIVGPQEDGYEKLLNAGCPQALIILPTRELAKQVARDLKVAAK 139
Query: 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
S+ +YGG Q++AL+ G D VVGTPGR+IDL+K L LS V+ VVLDEAD+
Sbjct: 140 NRSVRITQIYGGVAFEPQLKALEKGTDLVVGTPGRLIDLLKHGKLKLSGVKVVVLDEADE 199
Query: 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
ML +GF DVE +L R P R +M+FSATMP + +L +Y+ +P + +DQ
Sbjct: 200 MLDLGFLPDVETLLSRTPAGRHTMLFSATMPGEVIALARRYMSHPTHIRAQDPADQN--- 256
Query: 317 GISLYSIATSMY-----EKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYN 369
++ S+ +Y K ++ +++ AKG G I+FT+TKR A RLA ++ + +
Sbjct: 257 -ATVNSVKQVVYRCHAMNKLEVVSRIL--QAKGRGLSIIFTRTKRTAARLADDLSDRGFA 313
Query: 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
LHGD+ Q RE+ + AFR G+ ++L+ATDVAARG+DV +V
Sbjct: 314 AAALHGDLGQGAREQAMRAFRKGKVDVLVATDVAARGIDVDDV 356
>gi|409358710|ref|ZP_11237069.1| dead/deah box helicase [Dietzia alimentaria 72]
Length = 539
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 206/366 (56%), Gaps = 15/366 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L + +IV ALA RGI+ F IQ+ L A+ G D+IG+ARTG GKT FG+P+L +I
Sbjct: 49 ELGVRPEIVTALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRIA 108
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-----------DTICVYGGTPI 211
P LV+ PTREL QV ++ +A L + +YGGTP
Sbjct: 109 TGEATRSLDGTPRALVIVPTRELCVQVTQDLKIAATGLTASTENRTRPLKVLSIYGGTPY 168
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ AL+ GVD VVGTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E IL
Sbjct: 169 EQQVDALEKGVDVVVGTPGRLLDLANQSKLVLGKVEVLVLDEADEMLDLGFLPDIEKILR 228
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+P+ RQ+M+FSATMP I +L +L P + + + Y +KP
Sbjct: 229 MVPEKRQTMLFSATMPGPIITLARTFLTKPTHIRAEAADSGATHENTTQYVYRAHSMDKP 288
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
++ +++ +G ++FT+TKR A +LA +A + Y+ +HGD+ Q RE++L AFR
Sbjct: 289 EVVSRILQADGRGA-TMIFTRTKRTAQKLADDLAERGYSVGAIHGDLGQGAREKSLKAFR 347
Query: 391 DGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDAD 448
G ++L+ATDVAARG+DV +V V E ++ + R G+ V ++D D
Sbjct: 348 TGEVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRKGVAVTLVDWD 407
Query: 449 LLSSQG 454
L G
Sbjct: 408 DLPRWG 413
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/318 (42%), Positives = 198/318 (62%), Gaps = 12/318 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L++S I+ A+ R G + PIQ A + MQG+D+IG+A+TGTGKT AFGIP+++K
Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRAL 218
I R RN +++APTRELA QV +E + + + VYGG IS Q+RAL
Sbjct: 64 I------DHRSRNIQGIIIAPTRELAIQVSEELYRIGQYSRVHVLAVYGGQDISRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+VGTPGR++D I R L L V +VLDEAD+ML++GF +D+E IL +P++RQ
Sbjct: 118 KNHPQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP IR + +++ NP V + + + I Y I EK ++ +L+
Sbjct: 178 TMLFSATMPDPIRKIAERFMNNPELVRV--KAKEMTVPSIEQYYIKVQEREKFDVLSRLL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ IVF +TKR D LA+A+ + Y E +HGD+SQ++R L F+DG+ ++L
Sbjct: 236 DVQSP-DLAIVFGRTKRRVDELANALTLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVL 294
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+ V V
Sbjct: 295 VATDVAARGLDISGVTHV 312
>gi|383807106|ref|ZP_09962667.1| ATP-dependent RNA helicase [Candidatus Aquiluna sp. IMCC13023]
gi|383299536|gb|EIC92150.1| ATP-dependent RNA helicase [Candidatus Aquiluna sp. IMCC13023]
Length = 439
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 210/362 (58%), Gaps = 19/362 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ L I DI AL +GI+ FPIQ+ + A+ G D+IG+A+TGTGKTL FG+P++
Sbjct: 1 MSFKSLGIDADICEALESKGITSPFPIQEQAIPVALSGTDVIGQAKTGTGKTLGFGLPLI 60
Query: 159 DKIIKFNEKHGRGRNPL----CLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPIS 212
+ G NP LV+ PTRELA QV ++ + + T + +YGG
Sbjct: 61 QAL---------GENPAPGVQALVVVPTRELALQVSEDLILATTNRPTTVVAIYGGKAYE 111
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL+ G VVGTPGR++DL K+ +NLS V F+VLDEAD+ML +GF DVE +
Sbjct: 112 GQVAALEGGAQIVVGTPGRLLDLAKQKLMNLSNVTFMVLDEADEMLDLGFLPDVEKLFSL 171
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P RQ+M+FSATMP I SL +Y P+ + + + K I Y +K
Sbjct: 172 TPPQRQTMLFSATMPAAILSLARRYQNRPIHIRVSDPDEGKTKADIKQYVYRAHALDKDE 231
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++G+++ + GK I+F +TKR + +LA + + +N PLHGD+SQ RER++++FR+
Sbjct: 232 VVGRILQAEGR-GKTIIFVRTKRQSAKLAEELIDRGFNAAPLHGDMSQDARERSMASFRE 290
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADL 449
G+ IL+AT+VAARG+DV +V V + E +L + + R GK V +D +
Sbjct: 291 GKKEILVATEVAARGIDVDDVTHVINYSVPEDEKAYLHRTGRTGRAGKLGVAVTFVDWND 350
Query: 450 LS 451
L+
Sbjct: 351 LA 352
>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 657
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/275 (47%), Positives = 180/275 (65%), Gaps = 8/275 (2%)
Query: 148 GKTLAFGIPILDKIIK--FNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTI 203
GKTLAF +P+L+ + + + + GRGR P +VLAPTRELAKQV +F + +A L T+
Sbjct: 130 GKTLAFVLPVLESLSQSGYTKSLGRGRAPAVIVLAPTRELAKQVHADFETYGNAVGLSTV 189
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
CVYGG P Q AL GVD VVGTPGR+ D ++R LNL ++F +LDEAD+ML++GF
Sbjct: 190 CVYGGAPYGPQENALRRGVDIVVGTPGRIKDHLERGGLNLKSLKFRILDEADEMLNMGFV 249
Query: 264 EDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISL 320
+DVE IL + P Q+++FSAT+P W++ + K+LK TVDLVGD K ++ +
Sbjct: 250 DDVEKILGGVDDPSKVQTLLFSATLPTWVQQIARKFLKPERRTVDLVGDEKMKASNNVKH 309
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQS 380
+ + ++ +I + GG+ IVFT+TK DA LA + KS LHGDI Q+
Sbjct: 310 LLLPGHYSMRTQLVQDVIQCYGSGGRIIVFTETKNDASELAGVL-KSGTARALHGDIPQN 368
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
QRE TL FR +F++L+ATDVAARGLD+ +V LV
Sbjct: 369 QREVTLQGFRTSKFSVLVATDVAARGLDINDVQLV 403
>gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
Length = 446
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 204/326 (62%), Gaps = 19/326 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D L + +V LA +GI+ PIQ + AM GRD++G A+TGTGKT AFG+P++
Sbjct: 1 MDFDMLGLMPRLVKKLADQGITDPTPIQAQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI 60
Query: 159 DKI----IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPIS 212
D + +K K RG L+LAPTRELAKQ+ + L V GG I
Sbjct: 61 DALMRAGVKPEPKTVRG-----LILAPTRELAKQISDNLRDYTQGSHLKVALVVGGAGIV 115
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QM+ L+ GVD +V TPGR+IDL+ R AL+LSE ++VLDEADQML +GF + I
Sbjct: 116 AQMKRLERGVDLLVATPGRLIDLLDRKALSLSETHYLVLDEADQMLDLGFIHALRKIAPL 175
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI--SLYSIATSMYEK 330
L +RQ+M+FSATMP + L YL++P+ V++ + K AD I SL+ IA S EK
Sbjct: 176 LADDRQTMLFSATMPKQMNELAAAYLRSPVRVEV--NPPGKAADKIEQSLHYIAKS--EK 231
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAF 389
P ++ +L+ +H KG + IVF +TK ++L + K+ ++ +HG+ SQ QRER + AF
Sbjct: 232 PKLLIELLGKH-KGERAIVFGRTKHGCEKLYKTLEKAGFDAVSIHGNKSQGQRERAIVAF 290
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
R+G+ +L+ATDVAARGLD+P+V V
Sbjct: 291 REGKVTVLVATDVAARGLDIPDVKHV 316
>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 660
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 201/340 (59%), Gaps = 15/340 (4%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A ++ S G S D+ + V AL +GI+ LFP+Q E M+G +++ +ARTG+G
Sbjct: 40 APNNGSALTGRPFSDFDLLPNTVEALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSG 99
Query: 149 KTLAFGIPILDKI---IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
KTLAFGIPIL+K+ K NE+ RGR P ++ PTRELA QV + +
Sbjct: 100 KTLAFGIPILEKLARTTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKGFVVTAL 159
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q RAL GVD VV TPGR D +++ L V+ V LDEAD ML +GF +D
Sbjct: 160 YGGVAYSTQERALYSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDD 219
Query: 266 VEVILERLPQ---------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
+E++L+++ + N Q+++FSAT+P W+ + + +N +D+VG + A+
Sbjct: 220 IELLLQKVAEQNGSTEGNPNHQTLLFSATVPEWVHTCS-FIPRNKEFIDMVGQGTMRAAN 278
Query: 317 GISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
I Y E ++ L+ ++ + G+ +VFT TK++ L+ K + + LHG
Sbjct: 279 TIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTK-LDSQCLHG 337
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
D+ Q QRE T+ +FRD +F++LIATDVAARGLD+P VDLV
Sbjct: 338 DMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLV 377
>gi|297562761|ref|YP_003681735.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296847209|gb|ADH69229.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 516
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 207/340 (60%), Gaps = 13/340 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S ++ AL GI + F IQ+ L A+ G D+IG+ARTGTGKTLAFG+P+L + K
Sbjct: 1 MSTELADALEAEGIIEPFLIQELALPIALGGSDIIGQARTGTGKTLAFGLPLLQRAQK-- 58
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVD 223
G + P LV+ PTRELA QV + ++ T + VYGG Q+ L G D
Sbjct: 59 -DPGTPKRPRALVVVPTRELAIQVAADLTTASKRSGTRILTVYGGRSYEPQVNGLKEGTD 117
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++DL K+ L L V VVLDEAD+ML +GF D+E IL R P +RQ+M+FS
Sbjct: 118 VVVGTPGRLLDLEKQKHLRLDGVSAVVLDEADKMLDLGFLPDIERILTRTPDDRQTMLFS 177
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSD---QKLADGISLYSIATSMYEKPSIIGQLITE 340
ATMP I SL+ KYL+ P V D + + I+ ++ T +K ++ +L+ +
Sbjct: 178 ATMPSEIVSLSRKYLRRPTHVRASDDDEIDGSAITGQITQHAFRTHQMDKIEMLARLL-Q 236
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ G+ +VF QTKR DR+A + A+ + +HGD+ QSQRER L AFR+G+ NIL+A
Sbjct: 237 ASDHGQSMVFCQTKRACDRVAGDLEARGFAVAAVHGDLGQSQRERALRAFRNGKINILVA 296
Query: 400 TDVAARGLDVPNVDLVELVVLERKEVQFLST-QISRPGKS 438
TDVAARGLDV D+ +V E E + T +I R G++
Sbjct: 297 TDVAARGLDVD--DVTHVVNYETPEDEKTYTHRIGRTGRA 334
>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
Length = 538
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 142/339 (41%), Positives = 201/339 (59%), Gaps = 14/339 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
LDI+Q+I A+A G + PIQ + ++G+D+IG+A+TGTGKT AF IPIL+KI
Sbjct: 9 LDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIPILEKI-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R+ +VL PTRELA QV +E + A + T+ +YGG PI Q++AL
Sbjct: 67 ----DPNDRSLQAIVLCPTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDRQIKALKG 122
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV ++GTPGR ID IKR + V+ VVLDEAD+ML +GF ED+E ILE +P+ RQ+
Sbjct: 123 GVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETILENVPEERQTT 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
FSATMP I LT KY P + +V + + I Y I T K ++ +LI
Sbjct: 183 FFSATMPKAILELTKKYQNEPEHIKVV--RKELTVENIKQYYIETRASNKIEVLSRLIDV 240
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ +VF TK+ AD L + + Y + LHGD+ Q QR+ + FR+G +IL+A
Sbjct: 241 Y-NPKLSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFRNGTIDILVA 299
Query: 400 TDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
TDVAARG+DV +V+ V L + E ++ +I R G++
Sbjct: 300 TDVAARGIDVDDVECVFNFDLPQDE-EYYVHRIGRTGRA 337
>gi|384567061|ref|ZP_10014165.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
gi|384522915|gb|EIF00111.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
Length = 577
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 197/314 (62%), Gaps = 17/314 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +++ AL+ G + PIQ+A + P ++G D++G+A TGTGKT AF +P+L +I
Sbjct: 30 LGLRPELLKALSDLGYEEPTPIQRAAIPPLLEGADVVGQAATGTGKTAAFSLPVLHRIAD 89
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
+ RG P LVL PTRELA QV + + L + VYGG P+ Q+R+L+ G
Sbjct: 90 LD----RGTEPSALVLVPTRELAAQVCEAMYRYGHHLGVRVVPVYGGQPMGRQLRSLESG 145
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VV TPGR +D + R +L+LS+++ VVLDEAD+ML +GFAED++ IL+R P +RQ+M+
Sbjct: 146 VDVVVATPGRALDHLSRGSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDRTPDDRQTML 205
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----EKPSIIGQ 336
FSATMPP I + +YL+ P ++L S + +G S SI + Y KP+ +G+
Sbjct: 206 FSATMPPRIAGMVRRYLREPRRIEL---SRAESTNGHS-ASITQTAYLVPRGHKPAALGR 261
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ A +VF +T+ + DRL M + Y E LHG + Q+QR R + R G +
Sbjct: 262 ILDIEAPEA-TVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQNQRNRVVGRLRAGTAD 320
Query: 396 ILIATDVAARGLDV 409
+++ATDVAARGLD+
Sbjct: 321 LVVATDVAARGLDI 334
>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
str. F0310]
Length = 598
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 211/350 (60%), Gaps = 21/350 (6%)
Query: 79 HAQSAVDDYVAYDDSSK-DEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAM 134
H ++ + D + K DE LD + ++ IV AL +GI+ FPIQ L PA+
Sbjct: 46 HPEAPAQEEATPDITDKGDEDLDKKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPAL 105
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVE 190
D+IG+A+TGTGKTL FGIP+L+ +I +E+ P L++ PTREL KQV
Sbjct: 106 DRHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVA 165
Query: 191 KEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
++ ++A L T + +YGG Q+ AL G D VVGTPGR+IDL+++ L+LS V+
Sbjct: 166 QDLRDAAKYLSTRIVEIYGGVAFEPQIEALTRGADIVVGTPGRLIDLLRKGHLHLSGVET 225
Query: 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
VVLDEAD+ML +GF DVE +L R+P+NR +M+FSATMP + +L +++ +P +
Sbjct: 226 VVLDEADEMLDLGFLPDVETLLGRVPENRHTMLFSATMPGPVVALARRFMVHPTHIRAQD 285
Query: 309 DSDQKLADGISLYSIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA 363
DQ ++ ++ +Y K ++ +++ + G+ ++F +TKR A RL
Sbjct: 286 PDDQNQ----TVNTVKQVIYRVHAMNKVEVVARILQAEGR-GRTVIFCRTKRTAARLGED 340
Query: 364 M-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
+ A+ + LHGD+ Q RE+ L AFR G+ ++L+ATDVAARG+DV +V
Sbjct: 341 LTARGFAVGALHGDLGQGAREQALRAFRKGKVDVLVATDVAARGIDVDDV 390
>gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
Length = 576
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 196/323 (60%), Gaps = 19/323 (5%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
DE + L + +++ AL+ G + PIQ+ + P + GRD++G+A TGTGKT AF +
Sbjct: 23 DEASAFTDLGLRAELLGALSALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFAL 82
Query: 156 PILDKIIKFNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPIS 212
P+L ++ GR G P+ LVL PTRELA QV + FH L + +YGG PI
Sbjct: 83 PLLHRM-----PDGRAGGEPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIG 137
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+RALD GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E ILE
Sbjct: 138 RQLRALDLGVDVVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEH 197
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-----SLYSIATSM 327
PQ RQ+++FSATMP I + ++L +P+ + + +Q++A S Y +A +
Sbjct: 198 APQQRQTVLFSATMPSRIDGMARQHLTDPVRIQI--GREQQVAGETPRVRQSAYIVARA- 254
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
KP+ +G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R +
Sbjct: 255 -HKPAALGRVLDVESPTA-AIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVM 312
Query: 387 SAFRDGRFNILIATDVAARGLDV 409
R G ++L+ATDVAARGLDV
Sbjct: 313 GRLRAGTADLLVATDVAARGLDV 335
>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 603
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 199/314 (63%), Gaps = 13/314 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
S+ ++ L +G + PIQKA + M GRD++G+A+TGTGKT AF +P+L++I
Sbjct: 58 FSEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLLERI---- 113
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGV 222
+ + RNP LVL PTRELA QV + F E +++ + VYGG+ Q+ +L GV
Sbjct: 114 --NSKERNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYSLKRGV 171
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
+ +VGTPGRV+D I++ LN +Q +VLDEAD+ML +GF +D+E ILE+LP RQ ++F
Sbjct: 172 EIIVGTPGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMVLF 231
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMPP IR L+ +YL++P + + + +K A I + I K ++ +++ E
Sbjct: 232 SATMPPEIRKLSKRYLRDPAEITI--KAKKKEAQLIRQHYITVQNSYKLEVLRRVL-ELN 288
Query: 343 KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
G I+F +TK +LA ++ A ++N L+GD+ Q+ RERT+ R G NIL+ATD
Sbjct: 289 YGEGVIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVATD 348
Query: 402 VAARGLDVPNVDLV 415
VAARGLDV + LV
Sbjct: 349 VAARGLDVERIGLV 362
>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 574
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 198/320 (61%), Gaps = 9/320 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + QDI ALA GI+ FPIQ+ L A+ G+D+IG+A+TGTGKTL FG+P + +
Sbjct: 16 FADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQR 75
Query: 161 IIKFNEKHGRGRN----PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ 214
++ +++ P L+L PTRELA QV ++ +A + +YGG PI Q
Sbjct: 76 VVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQ 135
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L G++ VVGTPGR+IDL ++ LNL +V+ VVLDEAD+ML +GF VE IL LP
Sbjct: 136 AELLRRGLEVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLP 195
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD-QKLADGISLYSIATSMYEKPSI 333
++RQSM+FSATMP + ++ +Y+ P+ + D K I +K +
Sbjct: 196 EDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEM 255
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + G+ ++FT+TKRDA R+A + + + PLHGD++Q RE+ L AFR G
Sbjct: 256 IGRILRATGR-GRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTG 314
Query: 393 RFNILIATDVAARGLDVPNV 412
+ +IL+ATDVAARG+DV +V
Sbjct: 315 KVDILVATDVAARGIDVEDV 334
>gi|336176951|ref|YP_004582326.1| DEAD/DEAH box helicase [Frankia symbiont of Datisca glomerata]
gi|334857931|gb|AEH08405.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 694
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 145/355 (40%), Positives = 208/355 (58%), Gaps = 8/355 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + ++IV AL +GI FPIQ+ L A+ G D+IG+ARTGTGKTLAFGIP+ +
Sbjct: 41 FADLGVREEIVEALRAKGIVSPFPIQELTLPLALAGSDIIGQARTGTGKTLAFGIPLAQQ 100
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRAL 218
+E G P LV+ PTREL QV + S L + VYGG Q+ +L
Sbjct: 101 ATSRDE--GASGQPQALVVVPTRELCLQVTADIDRAGSGRGLRVLPVYGGRAYEPQLASL 158
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR++DL ++NAL L+ V+ +VLDEAD+ML +GF DVE IL +LP RQ
Sbjct: 159 RAGVDIVVGTPGRLLDLARQNALVLTAVRMLVLDEADEMLDLGFLPDVERILAQLPDIRQ 218
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMPP + SL ++++ P+ V + + IS + +K ++ +++
Sbjct: 219 TLLFSATMPPPVISLARRFMRRPVHVTAEHPDEGRTVPDISQHVFRAHALDKIEVLARVL 278
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G IVF +T+R ADR+A + + + +HGDI Q QRE+ L AFR G+ ++L
Sbjct: 279 QAEGR-GLAIVFVRTRRTADRVADDLTGRGFAAAAVHGDIGQGQREQALRAFRSGKIDVL 337
Query: 398 IATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDADLL 450
+ATDVAARG+D+ V V E +L + R G S V +D D L
Sbjct: 338 VATDVAARGIDIGGVTHVVNYQCPEDENVYLHRVGRTGRAGGSGVAVTFVDWDDL 392
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 210/346 (60%), Gaps = 14/346 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++S +I A+A G + PIQ + ++G D+IG+A+TGTGKT AFGIP
Sbjct: 2 ENVVFKDLNLSDEIQKAIADMGFEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
++ + NE L+L+PTRELA Q+ +E + + + + VYGG PI
Sbjct: 62 AIEMLDPQNE------GIQVLILSPTRELAIQISEELRDVSKYKEGIKILPVYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL ++GTPGR++D ++R L L++++ ++LDEAD+ML++GF ED++ ILE++
Sbjct: 116 QIAALKKRPQIIIGTPGRIMDHMRRRTLKLADLKMLILDEADEMLNMGFREDIDTILEKV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ +Q+++FSATMP I LT+KYLKNPL + Q I + + S K I
Sbjct: 176 PEEKQTILFSATMPKEILDLTSKYLKNPLHIKAA--HKQMTVPSIEQFYLEVSQSSKLEI 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +LI + G +VF TKR D L ++ ++ Y+ E LHGD+ Q QR R ++ FR G
Sbjct: 234 LSRLIDAN-NIGLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKG 292
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+ +ILIATDVAARG+DV NV+ V L E ++ +I R G++
Sbjct: 293 QIDILIATDVAARGIDVDNVEAVFNYDLPSDE-EYYVHRIGRTGRA 337
>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
Length = 528
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 215/361 (59%), Gaps = 23/361 (6%)
Query: 94 SKDEGLD--ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
SK+E D + I+ +I AL+ +GI+ FPIQ L A+ GRD+IG+A+TGTGKTL
Sbjct: 35 SKNELADKTFADFGINTEICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTL 94
Query: 152 AFGIPILDKI-----IKF-NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTI 203
FG+P L K+ K+ E H +G +P +V+ PTREL KQV + +A S+
Sbjct: 95 GFGLPTLMKVHGPASAKYATEVHYQG-HPQAMVIVPTRELCKQVAADLRAAAKQTSVRIT 153
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
+YGG Q+ AL G D +VGTPGR+IDL+KR L L V VVLDEAD+ML +GF
Sbjct: 154 EIYGGAAFEPQIDALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFL 213
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
DVE++L R+PQ RQ+M+FSATMP I +L +Y+K P + DQ G ++ ++
Sbjct: 214 PDVEILLSRVPQTRQTMLFSATMPGEIVALARRYMKQPTHIRAQEADDQ----GATVKTV 269
Query: 324 ATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDI 377
+Y K ++ +++ + G ++FT+TKR A L+ + A+ + LHGD+
Sbjct: 270 KQVIYRCHALNKIEVVARILQARER-GLAVIFTKTKRTAATLSEDLSARGFAVASLHGDL 328
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGK 437
Q RE+ + AFR G+ ++L+ATDVAARG+DV +V V E +L +I R G+
Sbjct: 329 GQGAREQAMRAFRSGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLH-RIGRTGR 387
Query: 438 S 438
+
Sbjct: 388 A 388
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 198/318 (62%), Gaps = 12/318 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L++S I+ A+ R G + PIQ A + MQG+D+IG+A+TGTGKT AFGIP+++K
Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRAL 218
I R RN +++APTRELA QV +E + + + VYGG IS Q+RAL
Sbjct: 64 I------DHRSRNIQGIIIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+VGTPGR++D I R L L V +VLDEAD+ML++GF +D+E IL +P++RQ
Sbjct: 118 KNHPQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP IR + +++ NP V + + + I Y + EK ++ +L+
Sbjct: 178 TMLFSATMPDPIRKIAERFMNNPELVRV--KAKEMTVPSIEQYYVKVQEREKFDVLSRLL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ IVF +TKR D LA+A+ + Y E +HGD+SQ++R L F+DG+ ++L
Sbjct: 236 DVQSP-DLAIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVL 294
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+ V V
Sbjct: 295 VATDVAARGLDISGVTHV 312
>gi|403508500|ref|YP_006640138.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
gi|402803335|gb|AFR10745.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
Length = 513
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 208/342 (60%), Gaps = 17/342 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S +I AL GI + FPIQ+ L A+ G D+IG+ARTGTGKTLAFG+P+L + +
Sbjct: 1 MSPEISDALEAEGIVEPFPIQELALPIALNGSDIIGQARTGTGKTLAFGLPLL----QLS 56
Query: 166 EKH-GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGV 222
++ G + P LV+ PTRELA QV + ++ + VYGG Q+ L G
Sbjct: 57 QREPGTAKRPRALVVVPTRELAIQVAADLTTASKRSGGRILTVYGGRSYEPQINGLQEGT 116
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGR++DL K+ L L V VVLDEAD+ML +GF D+E IL + P RQ+M+F
Sbjct: 117 DVVVGTPGRLLDLEKQKHLRLDGVASVVLDEADKMLDLGFLPDIERILTKTPAERQTMLF 176
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQ----KLADGISLYSIATSMYEKPSIIGQLI 338
SATMP I +L+ YL P V GD ++ + I+ ++ T +KP ++ +L+
Sbjct: 177 SATMPSEIVTLSRNYLTRPTHV-RAGDDNEIDGSAITSRIAQHAFRTHQMDKPEMLARLL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G+ +VF QTKR DR+A + ++ + +HGD+ QSQRER L AFR+G+ NIL
Sbjct: 236 -QAEDHGQSMVFCQTKRACDRVASDLKSRGFAAAAVHGDLGQSQRERALRAFRNGKINIL 294
Query: 398 IATDVAARGLDVPNVDLVELVVLERKEVQFLST-QISRPGKS 438
+ATDVAARGLDV D+ +V E E + T +I R G++
Sbjct: 295 VATDVAARGLDVD--DVTHVVNYETPEDEKTYTHRIGRTGRA 334
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 198/318 (62%), Gaps = 12/318 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ D+ ++ A+ G + PIQ + A+QG+DMIG+A+TGTGKT AFGIP+++K
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMINK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I K +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 64 ISKNDEKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMPP I+ L ++LK+P V ++ Q A I I +K + +LI
Sbjct: 178 TMLFSATMPPNIKRLAEQFLKDPEHVSVI--PKQVSAPLIDQAYIEVPERQKFEALSRLI 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ IVF +TKR D LA A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L
Sbjct: 236 DMESP-ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLDV V V
Sbjct: 295 VATDVAARGLDVSGVTHV 312
>gi|403385798|ref|ZP_10927855.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC30]
Length = 511
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 200/316 (63%), Gaps = 12/316 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + +L R G + PIQ + A++G D+IG+A+TGTGKT+AFG+P+++
Sbjct: 3 NFSELNISESTLKSLERMGFEEATPIQAGTIPLAVEGHDIIGQAQTGTGKTVAFGVPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K+ + K + LV+APTRELA Q +E H+ + VYGG IS Q+RA
Sbjct: 63 KV---DPKEAAVQ---ALVIAPTRELAIQCSEELHKIGYGKRSKILSVYGGQDISRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR++D IKR L L V+ +VLDEAD+ML++GF ED+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRILDHIKRRTLKLENVKTLVLDEADEMLNMGFIEDINAILENVPAER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + + ++ P +V + + + D I + + + EK I+ +L
Sbjct: 177 QTLLFSATMPPAIRKIADTFMTEPQSVKI--KAKELTVDNIEQFFVKSQEREKFDILSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ K IVF +TKR D L+HA++ + Y E +HGD+SQ++R L F++ + ++
Sbjct: 235 LNVQ-KPELAIVFGRTKRRVDELSHALSIRGYIAEGIHGDLSQAKRLSVLRQFKENKIDV 293
Query: 397 LIATDVAARGLDVPNV 412
L+ATDVAARGLD+ V
Sbjct: 294 LVATDVAARGLDISGV 309
>gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 529
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/309 (42%), Positives = 194/309 (62%), Gaps = 15/309 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L+I +DI+ + G PIQ + G D+IG+A+TGTGKT AFGIP+L+KI
Sbjct: 10 LNIKKDILKGILELGYEVPTPIQAQAIPRLYAGEDIIGQAQTGTGKTAAFGIPMLEKI-- 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDY 220
+ + + P L+LAPTREL+ QV E + + L +I +YGG PI Q++AL
Sbjct: 68 ----NPQQKTPQVLILAPTRELSMQVADEIRKFSKYLSGAKSIAIYGGQPIDRQIKALKQ 123
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV+ VVGTPGR++D I+R L L ++ +VLDEADQML +GF++D+E IL+ P RQ++
Sbjct: 124 GVNIVVGTPGRILDHIRRKTLRLDQIVGLVLDEADQMLDMGFSDDIEAILQETPSERQTV 183
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI-T 339
MFSATMP I + KY+KNP V +V + IS Y +EK + +++
Sbjct: 184 MFSATMPKEIEEIAKKYMKNPKKVKVV--HKELTVPKISQYYFEVRPHEKLDALCRILDM 241
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
E+++ G I+F +TK+ D L + ++ Y+ E +HGD+ QSQR+R + FRDG +++I
Sbjct: 242 ENSELG--IIFCRTKKGVDELVENLQSRGYSVEGIHGDLKQSQRDRVMKKFRDGTLDLMI 299
Query: 399 ATDVAARGL 407
ATDVAARG+
Sbjct: 300 ATDVAARGI 308
>gi|383810152|ref|ZP_09965659.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Rothia aeria F0474]
gi|383447091|gb|EID50081.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Rothia aeria F0474]
Length = 536
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 201/330 (60%), Gaps = 9/330 (2%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D++++ + + + QDI ALA GI+ FPIQ L A+ G D+I +A+TGTGKT
Sbjct: 3 DNAAQQKTETFADYGVRQDISDALAAVGITTPFPIQTMALPVALAGHDIIAQAKTGTGKT 62
Query: 151 LAFGIPILDKIIKFNEKHGRGRN----PLCLVLAPTRELAKQVEKEFHESAP--SLDTIC 204
L FG+P + + +++ P L+L PTRELA QV ++ ++ +
Sbjct: 63 LGFGLPTIQSVTGRDDEGWDDLEFPGAPQALILVPTRELAIQVGEDLAIASKLRNARVAT 122
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
+YGG P Q++ L G++ VVGTPGR+IDL + ALNL +V+ VVLDEAD+ML +GF
Sbjct: 123 LYGGVPYEPQVKLLKKGLEVVVGTPGRLIDLYNQGALNLKQVKIVVLDEADEMLDLGFLP 182
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSI 323
VE IL LP RQSM+FSATMP + S+ +Y+ P+ + DQ K I
Sbjct: 183 SVEKILSYLPAQRQSMLFSATMPGPVISMARRYMNKPMRMSAADPEDQAKTKASIRQVVY 242
Query: 324 ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQR 382
+K ++G+++ + G+ ++FT+TKRDA R+A + A+ + PLHGD++Q R
Sbjct: 243 RVHHMDKDEMLGRILRAQGR-GRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAR 301
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNV 412
E+ L AFR+G+ +IL+ATDVAARG+DV +V
Sbjct: 302 EQALRAFRNGKVDILVATDVAARGIDVEDV 331
>gi|145474053|ref|XP_001423049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390109|emb|CAK55651.1| unnamed protein product [Paramecium tetraurelia]
Length = 651
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 199/330 (60%), Gaps = 11/330 (3%)
Query: 95 KDEGLDISKLDI---SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
K +G+D S L ++ L RGIS LFPIQ+ E G D+IG+ RTG+GKTL
Sbjct: 18 KVKGIDESNLKAYIKNKQTRKVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTL 77
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGG 208
A+ +PIL++I K + +NP LVL PTRELA QV EF+ +YGG
Sbjct: 78 AYCLPILERIRGLGLK--QNKNPYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGG 135
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
T + +Q+ + G + VVGTPGR+ DL++R L L E+Q VVLDEADQML+ GF E++E
Sbjct: 136 TDLRNQIDQVRQGCEIVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEK 195
Query: 269 ILERLPQNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
I+ + + Q ++FSAT+P W++ L++KY++ N ++L+ + + + + Y++ +
Sbjct: 196 IMSYFNERKIQMLLFSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCA 255
Query: 327 MYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
+ IG +++ + + + I+F +TKR+ + + +PLHGDI Q QR T
Sbjct: 256 RNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVT 315
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLV 415
F++G+F L+AT+VAARGLD P VDL+
Sbjct: 316 FEGFKNGKFKCLVATNVAARGLDFPQVDLI 345
>gi|403717110|ref|ZP_10942499.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
gi|403209372|dbj|GAB97182.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
Length = 479
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 212/367 (57%), Gaps = 16/367 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + DIVAALA GI FPIQ A+ G D+IG+A+TGTGKTL FG+P+L+K
Sbjct: 35 FADFGVHPDIVAALAGAGIVHPFPIQAMTAPVALTGHDIIGQAKTGTGKTLGFGVPLLNK 94
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
++ F GR P LV+ PTREL QV + + + +YGG
Sbjct: 95 VVAPGDESFESLPHPGR-PQALVVVPTRELCTQVTGDLKTAGKKRGIRVESIYGGRAFEP 153
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GV+ +VGTPGR+IDL K+ L LS V+ VVLDEAD+ML +GF DVE IL +
Sbjct: 154 QIEALRRGVEVIVGTPGRLIDLNKQGHLALSNVRTVVLDEADEMLDLGFLPDVEKILAQT 213
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS--DQKLADGISLYSIATSMYEKP 331
P +RQ+M+FSATMP + +L +Y+ P + V D+ D++ I + +K
Sbjct: 214 PASRQTMLFSATMPGAVVALARRYMTQPTHIRAVSDAGDDRQTVAAIEQFVYRAHAMDKV 273
Query: 332 SIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAF 389
++ +++ AKG G I+F++TKR A ++A + + + +HGD+ Q RE+ L AF
Sbjct: 274 ELLSRVL--QAKGRGLTIIFSRTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAF 331
Query: 390 RDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDA 447
R+G+ +IL+ATDVAARG+DVPNV V E +L + + R G + V ++D
Sbjct: 332 RNGKVDILVATDVAARGIDVPNVTHVVNYQCPEDEKTYLHRTGRTGRAGLTGVAITLVDW 391
Query: 448 DLLSSQG 454
D L G
Sbjct: 392 DDLPRWG 398
>gi|452990332|emb|CCQ98554.1| putative ATP-dependent RNA helicase [Clostridium ultunense Esp]
Length = 535
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 197/317 (62%), Gaps = 15/317 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+ I Q I+ A+ G + PIQ A + ++G D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 17 EFKIDQAILKAIQEMGFEEPSPIQSACIPKILEGFDVIGQAQTGTGKTAAFGIPIVEKVT 76
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDY 220
E LVL PTRELA Q+ E + + + T+ +YGG I HQ+RAL
Sbjct: 77 SSPEVQ-------ALVLTPTRELAIQISGELRKISKFKRIKTLPIYGGQSIGHQIRALKQ 129
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV V+GTPGR+ID + R L L V+ VVLDEAD+ML +GF +D+E IL +P +RQ++
Sbjct: 130 GVQVVIGTPGRIIDHLNRKTLKLDHVRIVVLDEADEMLDMGFIDDIESILRSVPADRQTL 189
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLIT 339
+FSATMP IRSL N+Y+K+P TV + + ++ A I +Y + S+ L +
Sbjct: 190 LFSATMPAEIRSLANRYMKDPQTVRV--NREEVAAPLIEQVYYKVLEKNKLDSLCRVLDS 247
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
E + G I+F +TK+ D L ++ A+ Y + LHGD+SQ+QR++ + FR R +LI
Sbjct: 248 EEVELG--IIFCRTKKGVDELTESLQARGYLADGLHGDLSQAQRDKVMGDFRTNRIELLI 305
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARG+DV NV V
Sbjct: 306 ATDVAARGIDVSNVSHV 322
>gi|423687698|ref|ZP_17662501.1| cold-shock deAd box protein a [Vibrio fischeri SR5]
gi|371493481|gb|EHN69084.1| cold-shock deAd box protein a [Vibrio fischeri SR5]
Length = 636
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 194/317 (61%), Gaps = 13/317 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
KI N K NP +++APTRELA QV K + L + +YGG I QMR
Sbjct: 67 KI---NLKQ---HNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G +VGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P
Sbjct: 121 ALSRGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDT 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++++ ++YL++P VD+ G + D + EK + +
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLRDPARVDVAGTN--HTVDKVEQNFWVVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E + IVF +T++D +RLA + A+ + LHGDI QSQRERT+ ++G +
Sbjct: 239 LL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVID 297
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDV ARGLDVP +
Sbjct: 298 ILVATDVVARGLDVPRI 314
>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
Length = 640
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 194/317 (61%), Gaps = 13/317 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
KI N K NP +++APTRELA QV K + L + +YGG I QMR
Sbjct: 67 KI---NLKQ---HNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G +VGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P
Sbjct: 121 ALSRGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDT 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++++ ++YL++P VD+ G + D + EK + +
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLRDPARVDVAGTN--HTVDKVEQNFWVVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E + IVF +T++D +RLA + A+ + LHGDI QSQRERT+ ++G +
Sbjct: 239 LL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVID 297
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDV ARGLDVP +
Sbjct: 298 ILVATDVVARGLDVPRI 314
>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
Length = 664
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 199/330 (60%), Gaps = 11/330 (3%)
Query: 95 KDEGLDISKLDI---SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
K +G+D S L ++ L RGIS LFPIQ+ E G D+IG+ RTG+GKTL
Sbjct: 18 KVKGIDESNLKAYIKNKQTRKVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTL 77
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGG 208
A+ +PIL++I K + +NP LVL PTRELA QV EF+ +YGG
Sbjct: 78 AYCLPILERIRGLGLK--QNKNPYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGG 135
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
T + +Q+ + G + VVGTPGR+ DL++R L L E+Q VVLDEADQML+ GF E++E
Sbjct: 136 TDLRNQIDQVRQGCEIVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEK 195
Query: 269 ILERLPQNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
I+ + + Q ++FSAT+P W++ L++KY++ N ++L+ + + + + Y++ +
Sbjct: 196 IMSYFNERKIQMLLFSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCA 255
Query: 327 MYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
+ IG +++ + + + I+F +TKR+ + + +PLHGDI Q QR T
Sbjct: 256 RNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVT 315
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLV 415
F++G+F L+AT+VAARGLD P VDL+
Sbjct: 316 FEGFKNGKFKCLVATNVAARGLDFPQVDLI 345
>gi|443291644|ref|ZP_21030738.1| Cold-shock DEAD box protein A [Micromonospora lupini str. Lupac 08]
gi|385885248|emb|CCH18845.1| Cold-shock DEAD box protein A [Micromonospora lupini str. Lupac 08]
Length = 581
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 193/315 (61%), Gaps = 13/315 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + +++ AL+ G + PIQ+ + P + GRD++G+A TGTGKT AF +P+L++
Sbjct: 29 FTELGLRPELLGALSALGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALPLLNR 88
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRAL 218
+ H G +P+ LVL PTRELA QV + FH L + +YGG PI Q+RAL
Sbjct: 89 M----SAHRDGGDPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRAL 144
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
D GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E ILE P RQ
Sbjct: 145 DSGVDVVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEHAPAERQ 204
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG---ISLYSIATSMYEKPSIIG 335
+++FSATMP I + ++L+ P+ +++ +Q +A + + + KP+ +G
Sbjct: 205 TVLFSATMPSRIDGMARQHLREPVRIEI--GREQTVAGEAPRVRQSAYIVTRAHKPAALG 262
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R + R G
Sbjct: 263 RVLDVESPTA-AIVFCRSREEVDRLTETMNGRGYRSEALHGGMSQEQRDRVMGRLRAGTA 321
Query: 395 NILIATDVAARGLDV 409
++L+ATDVAARGLDV
Sbjct: 322 DLLVATDVAARGLDV 336
>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 634
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 193/317 (60%), Gaps = 13/317 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
KI N K NP +++APTRELA QV K + L + +YGG I QMR
Sbjct: 67 KI---NLKQ---HNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G +VGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P
Sbjct: 121 ALSRGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDT 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++++ ++YL+ P VD+ G + D + EK + +
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLREPARVDVAGTN--HTVDKVEQNFWVVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E + IVF +T++D +RLA + A+ + LHGDI QSQRERT+ ++G +
Sbjct: 239 LL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVID 297
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDV ARGLDVP +
Sbjct: 298 ILVATDVVARGLDVPRI 314
>gi|403669622|ref|ZP_10934813.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC8E]
Length = 518
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 198/316 (62%), Gaps = 12/316 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + +L R G + PIQ + A++G D+IG+A+TGTGKT+AFG+P+++
Sbjct: 3 NFSELNISESTLKSLQRMGFEEATPIQAGTIPLAVEGHDIIGQAQTGTGKTVAFGVPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
I NE + LV+APTRELA Q +E H+ + VYGG I Q+RA
Sbjct: 63 NI-DPNETSIQ-----ALVIAPTRELAIQCSEEIHKIGYGKRSKILSVYGGQDIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR++D IKR L L V+ +VLDEAD+ML++GF ED+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRILDHIKRRTLKLENVKTLVLDEADEMLNMGFIEDINAILENVPNER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + + ++ P +V + + + D I Y + + EK I+ +L
Sbjct: 177 QTLLFSATMPPAIRKIADTFMTEPQSVKI--KAKELTVDNIDQYFVKSQEREKFDILSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ K IVF +TKR D L+HA++ + Y E +HGD+SQ++R L F++ + ++
Sbjct: 235 LNVQ-KPELAIVFGRTKRRVDELSHALSIRGYVAEGIHGDLSQAKRLSVLRQFKENKIDV 293
Query: 397 LIATDVAARGLDVPNV 412
L+ATDVAARGLD+ V
Sbjct: 294 LVATDVAARGLDISGV 309
>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
Length = 565
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 198/323 (61%), Gaps = 9/323 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + QDI ALA GI+ FPIQ+ L A+ G+D+IG+A+TGTGKTL FG+P + +
Sbjct: 16 FADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQR 75
Query: 161 IIKFNEKHGRGRN----PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ 214
++ +++ P L+L PTRELA QV ++ +A + +YGG PI Q
Sbjct: 76 VVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQ 135
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L G++ VGTPGR+IDL ++ LNL +V+ VVLDEAD+ML +GF VE IL LP
Sbjct: 136 AELLRRGLEVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLP 195
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD-QKLADGISLYSIATSMYEKPSI 333
++RQSM+FSATMP + ++ +Y+ P+ + D K I +K +
Sbjct: 196 EDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEM 255
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + G+ ++FT+TKRDA R+A + + + PLHGD++Q RE+ L AFR G
Sbjct: 256 IGRILRATGR-GRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTG 314
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ +IL+ATDVAARG+DV +V V
Sbjct: 315 KVDILVATDVAARGIDVEDVTHV 337
>gi|423351179|ref|ZP_17328830.1| hypothetical protein HMPREF9719_01125 [Turicella otitidis ATCC
51513]
gi|404386815|gb|EJZ81953.1| hypothetical protein HMPREF9719_01125 [Turicella otitidis ATCC
51513]
Length = 437
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 196/316 (62%), Gaps = 5/316 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL GI + F IQK L A+ G+D+IG+ARTG GKTLA+G+P+LD+
Sbjct: 17 FAELGVAAEIVDALNEGGIERTFAIQKLALPLALDGKDIIGQARTGMGKTLAYGVPLLDR 76
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + P LV+APTRELA+QV + +A L + +C+YGG + Q+ L
Sbjct: 77 VFDSADVTAPDGTPRALVVAPTRELARQVGTDLENAARGLPLEVLCIYGGQDFAPQLEGL 136
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNR 277
GVD VVGTPGR++DL +R AL+L V+ VVLDEAD+ML +GF DV +LE P + R
Sbjct: 137 KKGVDVVVGTPGRLLDLNRRGALDLGGVEIVVLDEADEMLDLGFLPDVTKLLELAPAERR 196
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMP I L + P+ + ++ +L + +K ++I ++
Sbjct: 197 QTLLFSATMPGSILGLARSVMTKPVHIRAEAPTEDQLHASTKQVVFQSHKLDKKAVIARI 256
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ + GK I+F +TKR A +A + + +HGD+ QS RER+L+A RDG ++
Sbjct: 257 LQAEGR-GKTIMFARTKRSTALAAEDLAERGFAVAAVHGDLPQSARERSLAALRDGSCDV 315
Query: 397 LIATDVAARGLDVPNV 412
L+ATDVAARGLD+ +V
Sbjct: 316 LVATDVAARGLDIDDV 331
>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
Length = 623
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 215/366 (58%), Gaps = 29/366 (7%)
Query: 64 AISRPLDFKSSIAWQHAQSAVDDYVAYD----------DSSKDEGLDISKLDISQDIVAA 113
++ P DF S + ++Q D A + DS+ D L + I+ A
Sbjct: 10 GVNEPEDFNKSESQDNSQGVNQDTRAANTSEGTGAESKDSANDNSQGFEHLGLPDKILQA 69
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
+A+ G + PIQ + M+GRD++G A+TGTGKT AF +P+L ++ + R+
Sbjct: 70 VAKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQL------DPQARH 123
Query: 174 PLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPG 230
P LVLAPTRELA QV + F E+ ++ + +YGG Q+ L G +VGTPG
Sbjct: 124 PQALVLAPTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSGLRRGAQVIVGTPG 183
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290
RVID +++ +L+LS++QF+VLDEAD+ML++GF EDVE ILE P +Q +FSATMP I
Sbjct: 184 RVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPDRKQVALFSATMPNAI 243
Query: 291 RSLTNKYLKNPLTVDLVGDSDQKLADGIS---LYSIATSMYEKPSIIGQLITEHAKGGKC 347
R L+ +YL NP V + S+++ D I L + + + I ++IT A
Sbjct: 244 RRLSKQYLHNPAEVTV--KSERRTNDNIKQRFLLIPHRAKMDAFTRILEVITYDA----I 297
Query: 348 IVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
IVF +TK + + +A A+ + Y+ ++GDI+Q+QRERT+ +DGR +IL+ATDVAARG
Sbjct: 298 IVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARG 357
Query: 407 LDVPNV 412
LDV +
Sbjct: 358 LDVERI 363
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 197/318 (61%), Gaps = 12/318 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ D+ ++ A+ G + PIQ + A+QG+DMIG+A+TGTGKT AFGIP++ K
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAISIPIALQGKDMIGQAQTGTGKTAAFGIPLISK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I K +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 64 ISKNDEKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMPP I+ L ++LK+P V ++ Q A I I +K + +LI
Sbjct: 178 TMLFSATMPPNIKRLAEQFLKDPEHVSVI--PKQVSAPLIEQAYIEVPERQKFEALSRLI 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ IVF +TKR D LA A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L
Sbjct: 236 DMESP-ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLDV V V
Sbjct: 295 VATDVAARGLDVSGVTHV 312
>gi|326802990|ref|YP_004320808.1| delta 1-pyrroline-5-carboxylate dehydrogenase domain-containing
protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 508
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 198/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++ ++ A+ G + PIQ + A++GRD++G+A+TGTGKT AFG+P+L
Sbjct: 1 MKFEELNLDPRLLQAVKNMGFEETTPIQAQTIPYALEGRDVLGQAQTGTGKTAAFGLPLL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI E + LV+APTRELA Q +E + + T+ VYGG I Q+
Sbjct: 61 EKIDHHTE------HIQALVIAPTRELAIQNGQELYRLGKEKGVRTVNVYGGANIRRQIH 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+ G VVGTPGR+IDL+KR LNL+ ++ +VLDEAD+ML++GF ED+E I+ P N
Sbjct: 115 QIKKGAPVVVGTPGRLIDLMKRKVLNLNFIETLVLDEADEMLNMGFIEDIETIIRATPSN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + ++++P+TV + ++ + AD I Y EK ++ +
Sbjct: 175 RQTLLFSATMPKEIQRIGEHFMQDPVTVKI--EAKEMTADTIDQYFTKCHDREKFDLLTR 232
Query: 337 LI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I HAK IVF +TKR D ++ + + Y E +HGD+SQ +R + F+DGR
Sbjct: 233 FIDVSHAK--LAIVFARTKRRVDEVSRGLIERGYQAEGIHGDLSQEKRSSIMKDFKDGRL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ NV V
Sbjct: 291 EILVATDVAARGLDISNVTHV 311
>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase [Stackebrandtia nassauensis DSM 44728]
gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 557
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 195/318 (61%), Gaps = 6/318 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + + VAAL+ GI++ F IQ+ + AM+G D+IGRA TGTGKTL FG+P+L+
Sbjct: 30 FTDLGVRAETVAALSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLET 89
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRAL 218
+ E G P LV+ PTREL QV ++ + + + + +YGG Q+ AL
Sbjct: 90 VTSAAE--GADGRPQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEAL 147
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV+ VVGTPGR++DL+K L L V VLDEAD+ML +GFAEDVE +L LP+ RQ
Sbjct: 148 RTGVEIVVGTPGRLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPEQRQ 207
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I SL+ K+LK P+T+ +D + + T K ++ +++
Sbjct: 208 TMLFSATMPDAIVSLSRKFLKQPMTIHAEVATDNAPSAQTKQLAYLTHSLNKIEVLARIL 267
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G IVF++TKR R+A + + + +HGD+ Q+ RER L AFR G+ ++L
Sbjct: 268 QAKDR-GLTIVFSRTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFRSGKIDVL 326
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLDV +V V
Sbjct: 327 VATDVAARGLDVRDVTHV 344
>gi|405979651|ref|ZP_11037994.1| hypothetical protein HMPREF9241_00717 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392067|gb|EJZ87128.1| hypothetical protein HMPREF9241_00717 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 596
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 204/337 (60%), Gaps = 26/337 (7%)
Query: 94 SKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+ DE L+ + ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKT
Sbjct: 65 TGDEDLEHKSFADFGVTDPIVDALEDKGITHPFPIQALTLPPALDRHDIIGQAKTGTGKT 124
Query: 151 LAFGIPILDKIIKFNEKHGRGRN-------PLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
L FGIP+L+ +I +E+ G + P L++ PTREL KQV + E+A L T
Sbjct: 125 LGFGIPVLEDVIAPDEE---GYDELLNPNMPQALIILPTRELTKQVATDLREAAAYLSTR 181
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL G D VVGTPGR+IDL+++ L+L+ + VVLDEAD+ML +G
Sbjct: 182 IVEIYGGVAFEPQIEALKKGADIVVGTPGRLIDLLRKGVLHLNGAETVVLDEADEMLDLG 241
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F DVE +L R P NR +M+FSATMP + +L K+++ P + DQ ++
Sbjct: 242 FLPDVETLLARTPANRHTMLFSATMPGPVVALARKFMEQPTHIRAQDPEDQNQ----TVN 297
Query: 322 SIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHG 375
S+ +Y +K ++ +++ + G+ I+F +TKR A RL + + + LHG
Sbjct: 298 SVKQVIYRVHAMDKVEVVARILQSEGR-GRSIIFCRTKRTAARLGEDLTERGFAVGSLHG 356
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
D+ Q RE+ L AFR+G+ ++L+ATDVAARG+DV +V
Sbjct: 357 DLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDV 393
>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 620
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 198/321 (61%), Gaps = 13/321 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + M+G D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDAILSALDGMGFVSPTPIQAASIPHLMKGSDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
P+L+K+ + ++ R P +VLAPTRELA QV K ++ L + +YGGT I
Sbjct: 63 PLLNKL-ELSQ-----RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++++ ++L+NP+T+D+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKNIVERFLRNPITIDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 294 GVIDILVATDVVARGLDVPRI 314
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 197/318 (61%), Gaps = 12/318 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ D+ ++ A+ G + PIQ + A+QGRDMIG+A+TGTGKT AFGIP+++K
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLINK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I + +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 64 ISRSDEKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I+ L ++LKNP V ++ Q A I I +K + +LI
Sbjct: 178 TMLFSATMPANIKRLAEQFLKNPEHVSVI--PKQVSAPLIDQAYIEVPERQKFEALSRLI 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ IVF +TKR D LA A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L
Sbjct: 236 DMESP-ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLDV V V
Sbjct: 295 VATDVAARGLDVSGVTHV 312
>gi|119715705|ref|YP_922670.1| DEAD/DEAH box helicase [Nocardioides sp. JS614]
gi|119536366|gb|ABL80983.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614]
Length = 479
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 193/314 (61%), Gaps = 9/314 (2%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I AL R I F IQ+ L A+ G D+IG+ARTGTGKTLAFGIP+L + + +
Sbjct: 4 EICDALERVNIVTPFAIQEMTLSVALMGTDLIGQARTGTGKTLAFGIPVLQRSVAPKDPD 63
Query: 169 ----GRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGV 222
+G+ P L++APTRELA QV + + L + VYGG Q+ AL GV
Sbjct: 64 YAELPQGK-PQALIVAPTRELALQVSGDLALAGADRGLRVLTVYGGVGYEPQLDALQEGV 122
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGR+IDL R AL++S V +VLDEAD+ML +GF DVE IL P+ RQ+M+F
Sbjct: 123 DIVVGTPGRLIDLANRRALDISHVHALVLDEADEMLDLGFLPDVERILAMTPETRQTMLF 182
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP I +L ++++P+ + + + + +KP IIG+++ +
Sbjct: 183 SATMPAAIVALARTHMRHPMNIRAESSYENATVPATAQFIYQAHDLDKPEIIGRVL-QAE 241
Query: 343 KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
GK IVFT+TKR A R+A +A + ++ PLHGD++Q RE+ L+ FR+ + +L+ATD
Sbjct: 242 DAGKVIVFTRTKRQAQRVADDLAERGFSASPLHGDMAQVAREKALTKFREDKLRVLVATD 301
Query: 402 VAARGLDVPNVDLV 415
VAARG+DV V V
Sbjct: 302 VAARGIDVAGVSHV 315
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/318 (43%), Positives = 197/318 (61%), Gaps = 12/318 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ D+ ++ A+ G + PIQ + A+QG+DMIG+A+TGTGKT AFGIP++ K
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAKSIPIALQGKDMIGQAQTGTGKTAAFGIPLISK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I + +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 64 IARNDEKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMPP I+ L ++LK+P V ++ Q A I I +K + +LI
Sbjct: 178 TMLFSATMPPNIKRLAEQFLKDPEHVSVI--PKQVSAPLIEQAYIEVPERQKFEALSRLI 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ IVF +TKR D LA A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L
Sbjct: 236 DMESP-ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLDV V V
Sbjct: 295 VATDVAARGLDVSGVTHV 312
>gi|399524825|ref|ZP_10765330.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
gi|398373862|gb|EJN51687.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
Length = 609
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 203/331 (61%), Gaps = 20/331 (6%)
Query: 97 EGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
E LD + ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL F
Sbjct: 66 ENLDKKSFADFGVTDPIVDALDDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGF 125
Query: 154 GIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYG 207
GIP+L+ +I +E+ P L++ PTREL KQV ++ ++A L T + +YG
Sbjct: 126 GIPVLEDVIAPDEEGYEDLLNPNQPQALIILPTRELTKQVAQDLRDAAKYLSTRIVEIYG 185
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q+ AL G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE
Sbjct: 186 GVAFEPQIEALTRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVE 245
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
+L R+P+NR +M+FSATMP + +L +++ +P + DQ ++ ++ +
Sbjct: 246 TLLARVPENRHTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQ----TVNTVKQVI 301
Query: 328 Y-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQ 381
Y K ++ +++ + G+ ++F +TKR A RL + + + LHGD+ Q
Sbjct: 302 YRVHAMNKVEVVARILQAEGR-GRTVIFCRTKRTAARLGEDLTDRGFAVGALHGDLGQGA 360
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNV 412
RE+ L AFR+G+ ++L+ATDVAARG+DV +V
Sbjct: 361 REQALRAFRNGKVDVLVATDVAARGIDVDDV 391
>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 530
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/319 (43%), Positives = 193/319 (60%), Gaps = 23/319 (7%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
++ +S+ ++ AL+ G + PIQKA + AM G D+IG+A+TGTGKT AFGIPI +K+
Sbjct: 11 EISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGVDLIGQAQTGTGKTAAFGIPICEKVN 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 71 PKFQAVQ-------ALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALR 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQ 278
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF ED+E IL+++P + RQ
Sbjct: 124 FGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKEERQ 183
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ-- 336
M+FSATMPP I+ L Y+ P +V + D +++ I YE I
Sbjct: 184 VMLFSATMPPEIKKLAQNYMHQPKSVAVSRDE-------LTVPLIEQVFYEARDKIKVDA 236
Query: 337 --LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 237 LCRIIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGK 296
Query: 394 FNILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ NV
Sbjct: 297 VELLVATDVAARGLDIDNV 315
>gi|323509827|dbj|BAJ77806.1| cgd6_4860 [Cryptosporidium parvum]
Length = 390
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 221/365 (60%), Gaps = 33/365 (9%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I + +S + L RGI +LFPIQ E +D++G+A+TGTGKTLAF +P++++
Sbjct: 16 IDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIER 75
Query: 161 IIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQ 214
++K + KHGR PL LVL PTRELA+QV EF + VYGG+P Q
Sbjct: 76 LLKKGKFDPNKHGR--RPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQ 133
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVG PGRV+D I+R LN+S++ + LDEAD+ML +GF E V+ I++ +
Sbjct: 134 IQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVR 193
Query: 275 -----------QNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLV-----GDSDQKLA- 315
QN+ Q ++FSAT+PPW++++ + + + +TVD+ G+ + + A
Sbjct: 194 KETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAA 253
Query: 316 -DGISLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
I +I + ++ ++G +IT +A GKCI+FT+TK+ A+ +A S C+ L
Sbjct: 254 RSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVL 313
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQIS 433
HGDI Q+QRE L AF++GR+ L+ATDVAARGL + +V VV++ + + T I
Sbjct: 314 HGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDV----AVVIQLAPPRDIDTYIH 369
Query: 434 RPGKS 438
R G++
Sbjct: 370 RSGRT 374
>gi|66475994|ref|XP_627813.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
gi|46229325|gb|EAK90174.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
[Cryptosporidium parvum Iowa II]
Length = 738
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 220/365 (60%), Gaps = 33/365 (9%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I + +S + L RGI +LFPIQ E +D++G+A+TGTGKTLAF +P++++
Sbjct: 66 IDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIER 125
Query: 161 IIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQ 214
++K + KHGR PL LVL PTRELA+QV EF + VYGG+P Q
Sbjct: 126 LLKKGKFDPNKHGR--RPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQ 183
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVG PGRV+D I+R LN+S++ + LDEAD+ML +GF E V+ I++ +
Sbjct: 184 IQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVR 243
Query: 275 -----------QNR-QSMMFSATMPPWIRS-LTNKYLKNPLTVDLV-----GDSDQKLA- 315
QN+ Q ++FSAT+PPW+++ LT + +TVD+ G+ + + A
Sbjct: 244 KETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAA 303
Query: 316 -DGISLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
I +I + ++ ++G +IT +A GKCI+FT+TK+ A+ +A S C+ L
Sbjct: 304 RSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVL 363
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQIS 433
HGDI Q+QRE L AF++GR+ L+ATDVAARGL + +V VV++ + + T I
Sbjct: 364 HGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDV----AVVIQLAPPRDIDTYIH 419
Query: 434 RPGKS 438
R G++
Sbjct: 420 RSGRT 424
>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
Length = 540
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 199/332 (59%), Gaps = 20/332 (6%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+A D + + ++++S + A+ G + PIQ + MQG+D+IG+A+TGT
Sbjct: 7 IANDQDKAKDKVKFGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGT 66
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICV 205
GKT FGIP+ + + N + GR + LVL PTRELA QV +E + L + V
Sbjct: 67 GKTATFGIPMAETL---NPRDGRVQ---ALVLCPTRELAIQVAQEISKIGRQNDLKALPV 120
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG I Q+RAL YGV V+GTPGR++D + R L L+ V+ VVLDEAD+ML +GF ED
Sbjct: 121 YGGQSIDRQIRALRYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVED 180
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+E IL+ P+ RQ+++FSATMP I+ L +Y+K P V + D +++ I
Sbjct: 181 IEAILKETPEERQTLLFSATMPGPIQQLARQYMKEPEFVTISRDK-------LTVPLIEQ 233
Query: 326 SMYE--KPSIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQS 380
YE + + L I + + G I+F +TKR D L A+ + Y E LHGD++Q+
Sbjct: 234 VYYECKESQKVDALCRILDMEEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQA 293
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
QR+R + FRDG+ +LIATDVAARGLDV NV
Sbjct: 294 QRDRVMKKFRDGKAELLIATDVAARGLDVENV 325
>gi|336118869|ref|YP_004573641.1| ATP-dependent RNA helicase [Microlunatus phosphovorus NM-1]
gi|334686653|dbj|BAK36238.1| putative ATP-dependent RNA helicase [Microlunatus phosphovorus
NM-1]
Length = 505
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 193/311 (62%), Gaps = 8/311 (2%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK- 167
DIVAALA+ GI FPIQ+ + A+ G DMIG+ARTGTGKTLAFGI L +I+ +E+
Sbjct: 4 DIVAALAQVGIVHPFPIQQMSIPIALTGTDMIGQARTGTGKTLAFGITALQRIVVPSERD 63
Query: 168 ---HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGV 222
+ P L++ PTRELA QV K+ ++ + VYGG Q+ AL GV
Sbjct: 64 FELQAKPGAPQALIVTPTRELALQVSKDLTTASSIRKARVLTVYGGVGYEPQLDALAAGV 123
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
+ VVGTPGR++DL R +L+LS ++ +VLDEAD+ML +GF DVE IL + P+ RQ+M+F
Sbjct: 124 EVVVGTPGRLLDLADRGSLDLSHIKVLVLDEADEMLDLGFLPDVERILAKTPELRQTMLF 183
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP I +L +L++P+ + D + + +KP I+ +++
Sbjct: 184 SATMPSAIVALARHHLRHPVNIRAESSDDTTTVPTTAQFVYQVHDLDKPEIVSRVLQAEN 243
Query: 343 KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
+ + +VF +TKR A RLA +A + ++ +HGD+SQ RE+ L FR G N+L+ATD
Sbjct: 244 R-NRVMVFCRTKRAAQRLADDLAERGFSVTAIHGDLSQVLREKALKKFRSGAVNVLVATD 302
Query: 402 VAARGLDVPNV 412
VAARG+DV V
Sbjct: 303 VAARGIDVEGV 313
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/318 (43%), Positives = 197/318 (61%), Gaps = 12/318 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ ++ ++ A+ G + PIQ + A+QGRDMIG+A+TGTGKT AFGIP++ K
Sbjct: 4 FAEFNLEPKVLEAITELGFEEATPIQSQSIPLALQGRDMIGQAQTGTGKTAAFGIPLISK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I + ++K L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 64 ISRNDDKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMPP I+ L ++LKNP V ++ Q A I I +K + +LI
Sbjct: 178 TMLFSATMPPNIKRLAEQFLKNPEHVSVI--PKQVSAPLIDQAYIEVPERQKFEALSRLI 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ IVF +TKR D LA A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L
Sbjct: 236 DMESP-ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLDV V V
Sbjct: 295 VATDVAARGLDVSGVSHV 312
>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
gi|167652390|gb|EDR96519.1| DEAD/DEAH box helicase [Anaerostipes caccae DSM 14662]
Length = 466
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/342 (39%), Positives = 210/342 (61%), Gaps = 14/342 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+L+I+ I+ A+ G PIQ A + ++GRD++G+A+TGTGKT AFGIP+L+K
Sbjct: 15 FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEK 74
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRA 217
+ + + P ++L PTRELA QV E + A + + +YGG I++Q+R+
Sbjct: 75 M------DTKVKKPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRS 128
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G + +VGTPGR++D ++R+ L L +++ VVLDEAD+ML++GF ED+E IL+ +P+ R
Sbjct: 129 LKTGANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEER 188
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMP I +T KY K+ + +V + I Y +K ++ +L
Sbjct: 189 QTLLFSATMPKAILDITKKYQKDSKLIKVV--RKELTVPNIEQYYYEVRPKQKVEVLCRL 246
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ H+ IVF TKR D + + + Y E +HGD+ QSQR+R + +FR GR +I
Sbjct: 247 LDMHSP-KLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDI 305
Query: 397 LIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
L+ATDVAARG+DV +VD V L + + +F +I R G++
Sbjct: 306 LVATDVAARGIDVDDVDAVFNYDLPQDD-EFYVHRIGRTGRA 346
>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 461
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/315 (42%), Positives = 201/315 (63%), Gaps = 12/315 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L I ++IV L GI + PIQ+ + A+QG+D+I +A+TGTGKT AF +PIL KI K
Sbjct: 8 LGIIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLPILQKINK 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
N+K + L+LAPTRELA Q+ E + A LD + VYGG + Q+ L G
Sbjct: 68 -NQK-----DVQALILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKLKGG 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
+ V+ TPGR++D ++R ++L V +VLDEADQML++GF E+VE I+++ PQNRQ M+
Sbjct: 122 MHVVIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLML 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
+SAT+P IR+LTN+Y+KNP+ + + S++ D I + T+ K + +I +
Sbjct: 182 YSATIPKGIRALTNRYMKNPVEIRI--HSNKVTLDEIKQLVVETTDRHKQEALMHMIKQE 239
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
IVF +TKR L+ A+ K ++C+ LHGD++Q++RE+ + FR+ + IL+AT
Sbjct: 240 NP-FLAIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQILVAT 298
Query: 401 DVAARGLDVPNVDLV 415
DVAARG+DV + V
Sbjct: 299 DVAARGIDVEGITHV 313
>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 537
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/319 (43%), Positives = 193/319 (60%), Gaps = 23/319 (7%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
++ +S+ ++ AL+ G + PIQKA + AM G D+IG+A+TGTGKT AFGIPI +KI
Sbjct: 18 EISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIPICEKIN 77
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 78 PKFQAVQ-------ALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALR 130
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQ 278
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E IL+++P + RQ
Sbjct: 131 FGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVDDIETILKQVPKEERQ 190
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ-- 336
M+FSATMPP I+ L Y+ P +V + D +++ I YE I
Sbjct: 191 VMLFSATMPPEIKKLAQNYMSQPKSVAVSRDE-------LTVPLIEQVFYETRDKIKVDA 243
Query: 337 --LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 244 LCRIIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGK 303
Query: 394 FNILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ NV
Sbjct: 304 VELLVATDVAARGLDIDNV 322
>gi|32399063|emb|CAD98303.1| DEAD/DEAH box helicase, possible [Cryptosporidium parvum]
gi|323508801|dbj|BAJ77294.1| cgd6_4860 [Cryptosporidium parvum]
Length = 688
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 220/365 (60%), Gaps = 33/365 (9%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I + +S + L RGI +LFPIQ E +D++G+A+TGTGKTLAF +P++++
Sbjct: 16 IDRFPLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIER 75
Query: 161 IIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQ 214
++K + KHGR PL LVL PTRELA+QV EF + VYGG+P Q
Sbjct: 76 LLKKGKFDPNKHGR--RPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQ 133
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVG PGRV+D I+R LN+S++ + LDEAD+ML +GF E V+ I++ +
Sbjct: 134 IQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVR 193
Query: 275 -----------QNR-QSMMFSATMPPWIRS-LTNKYLKNPLTVDLV-----GDSDQKLA- 315
QN+ Q ++FSAT+PPW+++ LT + +TVD+ G+ + + A
Sbjct: 194 KETGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAA 253
Query: 316 -DGISLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
I +I + ++ ++G +IT +A GKCI+FT+TK+ A+ +A S C+ L
Sbjct: 254 RSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVL 313
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQIS 433
HGDI Q+QRE L AF++GR+ L+ATDVAARGL + +V VV++ + + T I
Sbjct: 314 HGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDV----AVVIQLAPPRDIDTYIH 369
Query: 434 RPGKS 438
R G++
Sbjct: 370 RSGRT 374
>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 633
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 200/340 (58%), Gaps = 15/340 (4%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A ++ S G S D+ + V AL +GI+ LFP+Q E M+G +++ +ARTG+G
Sbjct: 40 APNNGSALTGRPFSDFDLLPNTVEALKSQGITTLFPVQALTYEAIMKGSNVLVQARTGSG 99
Query: 149 KTLAFGIPILDKI---IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
KTLAFGIPI++K+ K NE+ RGR P ++ PTRELA QV + +
Sbjct: 100 KTLAFGIPIVEKLARTTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKGFVVTAL 159
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q RAL GVD VV TPGR D +++ L V+ V LDEAD ML +GF +D
Sbjct: 160 YGGVAYSTQERALYSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDD 219
Query: 266 VEVILERLPQNR---------QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
+E++L+++ + Q+++FSAT+P W+ + + +N +D+VG + A+
Sbjct: 220 IELLLQKVAEQNGSTEGNPTHQTLLFSATVPEWVHTCSF-IPRNKEFIDMVGQGTMRAAN 278
Query: 317 GISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
I Y E ++ L+ ++ + G+ +VFT TK++ L+ K + + LHG
Sbjct: 279 TIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTK-LDSQCLHG 337
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
D+ Q QRE T+ +FRD +F++LIATDVAARGLD+P VDLV
Sbjct: 338 DMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLV 377
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 200/322 (62%), Gaps = 20/322 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + ++++ A+ G PIQ+ ++ AMQG D+IG+A+TGTGKT AFGIP+L K
Sbjct: 4 FNELGLQEELLKAVLDMGFDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
I K N + L+LAPTRELA QV +E + A +++ I +YGG I Q+R L
Sbjct: 64 IEKGN------KAVQALILAPTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
VV TPGR +D ++RN +NL+ +Q V+LDEAD+MLS+GF ED+E IL+ +P RQ
Sbjct: 118 KKNPQIVVATPGRFMDHMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPSERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP I+S++ K++K+P TV + + D I + +K + +L+
Sbjct: 178 TLLFSATMPKRIQSVSQKFMKSPQTVAVKNKT--MTVDTIEQRYLDLKERDKFDALCRLM 235
Query: 339 TEHAKGGKC----IVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
H C I+F +TKR D L+ A++ + Y+ E +HGD+ Q +RE+ L F+ G
Sbjct: 236 DIH-----CPELSIIFGRTKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGS 290
Query: 394 FNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 291 IKILVATDVAARGLDISGVSHV 312
>gi|423074659|ref|ZP_17063384.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
gi|361854479|gb|EHL06545.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
Length = 537
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 138/319 (43%), Positives = 193/319 (60%), Gaps = 23/319 (7%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
++ +S+ ++ AL+ G + PIQKA + AM G D+IG+A+TGTGKT AFGIPI +KI
Sbjct: 18 EISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIPICEKIN 77
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 78 PKFQAVQ-------ALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALR 130
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQ 278
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E IL+++P + RQ
Sbjct: 131 FGSQVVVGTPGRILDHLNRGTLKLQYVKIVVLDEADEMLDMGFVDDIETILKQVPKEERQ 190
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ-- 336
M+FSATMPP I+ L Y+ P +V + D +++ I YE I
Sbjct: 191 VMLFSATMPPEIKKLAQNYMSQPKSVAVSRDE-------LTVPLIEQVFYETRDKIKVDA 243
Query: 337 --LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 244 LCRIIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGK 303
Query: 394 FNILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ NV
Sbjct: 304 VELLVATDVAARGLDIDNV 322
>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
Length = 528
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 210/340 (61%), Gaps = 14/340 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L+I+ I+ A+ G PIQ A + ++GRD++G+A+TGTGKT AFGIP+L+K+
Sbjct: 8 ELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEKM- 66
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALD 219
+ + P ++L PTRELA QV E + A + + +YGG I++Q+R+L
Sbjct: 67 -----DTKVKRPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLK 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G + +VGTPGR++D ++R+ L L +++ VVLDEAD+ML++GF ED+E IL+ +P+ RQ+
Sbjct: 122 TGANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I +T KY K+ + +V + I Y +K ++ +L+
Sbjct: 182 LLFSATMPKAILDITKKYQKDSKLIKVV--RKELTVPNIEQYYYEVRPKQKVEVLCRLLD 239
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
H+ IVF TKR D + + + Y E +HGD+ QSQR+R + +FR GR +IL+
Sbjct: 240 MHSP-KLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILV 298
Query: 399 ATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
ATDVAARG+DV +VD V L + + +F +I R G++
Sbjct: 299 ATDVAARGIDVDDVDAVFNYDLPQDD-EFYVHRIGRTGRA 337
>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
Length = 678
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 216/359 (60%), Gaps = 22/359 (6%)
Query: 64 AISRPLDFKSSIAWQHAQSAVD---------DYVAYDDSSKDEGLDISKLDISQDIVAAL 114
++ P +F S + + +Q V+ D A D S+ D + L + +++ A+
Sbjct: 10 GVNEPEEFNKSESQEISQGDVETTGAANNPEDTGAEDTSANDNSQGFATLGLPEEVQQAV 69
Query: 115 ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174
A+ G ++ PIQ+ + M+GRD++G A+TGTGKT AF +P+L ++ R+P
Sbjct: 70 AKVGFTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQV------DPEVRHP 123
Query: 175 LCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
LVLAPTRELA QV F A L + + +YGG Q+ L G +VGTPGR
Sbjct: 124 QALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGAQIIVGTPGR 183
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
VID +++ +L++S+++F+VLDEAD+ML++GF EDVE ILE P+ +Q +FSATMP IR
Sbjct: 184 VIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVALFSATMPNSIR 243
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
L+ +YL +P V + S+++ D I+ + T +K +++ E + IVF
Sbjct: 244 RLSKQYLNDPAEVTV--KSERRTNDNITQRYLLTPHRQKMDAFTRIL-EVIEYDAIIVFC 300
Query: 352 QTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
+TK + + +A ++ + YN ++GDI+Q QRERT+ +DGR +IL+ATDVAARGLDV
Sbjct: 301 RTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAARGLDV 359
>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 642
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 194/319 (60%), Gaps = 7/319 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L + ++A+LA G K PIQ A + ++GRD++G A+TGTGKT AF +P L +
Sbjct: 22 FSELGLDARVLASLADLGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPALSR 81
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ + + +G + P LVLAPTRELA QV + F A P+ + VYGG+P Q+
Sbjct: 82 MAELADTNGPAKTPQILVLAPTRELALQVAEAFTSYAKYLPNFTVLPVYGGSPYGPQLNG 141
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGRVID I + +L+LS +Q+VVLDEAD+ML +GFAE+V+ ILE P+++
Sbjct: 142 LRRGAQVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDK 201
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q +FSATMP IR + ++YL+NP V + S Q I+ + K + ++
Sbjct: 202 QVALFSATMPRTIRRIASEYLRNPQEVAV--KSKQSTGTNITQRYLQVMGAHKLDAMTRI 259
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ G I F +TK + LA + A+ + ++GDI Q QRERT+ R G+ +I
Sbjct: 260 LESETFEG-VIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDI 318
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLDV + V
Sbjct: 319 LVATDVAARGLDVERISHV 337
>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
SK11]
gi|385837379|ref|YP_005875009.1| cold-shock DEAD-box protein A [Lactococcus lactis subsp. cremoris
A76]
gi|414073651|ref|YP_006998868.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. cremoris UC509.9]
gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
cremoris SK11]
gi|358748607|gb|AEU39586.1| Cold-shock DEAD-box protein A [Lactococcus lactis subsp. cremoris
A76]
gi|413973571|gb|AFW91035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. cremoris UC509.9]
Length = 551
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 200/319 (62%), Gaps = 16/319 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------NAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+NRQ+++FSATMP I+ + K++KNP + + + + AD I Y + T +EK ++
Sbjct: 173 ENRQTLLFSATMPADIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKTKEFEKFDVL 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + Y E +HGD+ Q++R L F+ G
Sbjct: 231 TRLL-DVERPQLAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGH 289
Query: 394 FNILIATDVAARGLDVPNV 412
++L+ATDVAARGLDV V
Sbjct: 290 IDVLVATDVAARGLDVSGV 308
>gi|393199138|ref|YP_006460980.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|406666247|ref|ZP_11074015.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|405385786|gb|EKB45217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
Length = 517
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 199/316 (62%), Gaps = 12/316 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + AM GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ D I R L L EVQ +VLDEAD+ML++GF +D+ ILE +P +R
Sbjct: 117 LKNKPQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDR 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP IR + ++K+P V + + + + I + + + EK + +L
Sbjct: 177 QTLLFSATMPPAIRKIAETFMKDPEIVKI--KAKELTMENIEQFFVKATEREKFDALSRL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ + K I+F +TKR D L+ A+ + + E +HGD+SQ++R L F++G+ +I
Sbjct: 235 L-DSQKPELAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDI 293
Query: 397 LIATDVAARGLDVPNV 412
LIATDVAARGLD+ V
Sbjct: 294 LIATDVAARGLDISGV 309
>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 503
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 192/312 (61%), Gaps = 7/312 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + DI AL GI FPIQ L A+ G D+IG+ARTGTGKT AFG+P+L ++
Sbjct: 23 LGVIDDIADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTFAFGLPLLQRV-- 80
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
+ + G + P LV+ PTRELA QV + ++ +D VYGG Q+ AL G
Sbjct: 81 -HTQPGSAKRPRALVVVPTRELAIQVAADLATASKRIDVRIATVYGGRAYEPQISALRKG 139
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VVGTPGR++DL+K+ L LSEV +VLDEAD+ML +GF D+E IL + P RQ+M+
Sbjct: 140 VDIVVGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPDIERILAKTPDQRQTML 199
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I +L+ KYL+ P + D + ++ + T +K ++ +L+
Sbjct: 200 FSATMPSEIVALSRKYLRRPTHIRAEDDPLDTGSGQVTQHVFRTHPLDKLEMLARLLQAR 259
Query: 342 AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ G +VF QTKR+ ++ + + + +HGD+ Q QRER L AFR+G+ ++L+AT
Sbjct: 260 NR-GLTMVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDVLVAT 318
Query: 401 DVAARGLDVPNV 412
DVAARG+DV +V
Sbjct: 319 DVAARGIDVDDV 330
>gi|449145896|ref|ZP_21776691.1| cold-shock DEAD-box protein A [Vibrio mimicus CAIM 602]
gi|449078284|gb|EMB49223.1| cold-shock DEAD-box protein A [Vibrio mimicus CAIM 602]
Length = 635
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389853567|ref|YP_006355811.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 551
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 200/319 (62%), Gaps = 16/319 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------NAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+NRQ+++FSATMP I+ + K++KNP + + + + AD I Y + T +EK ++
Sbjct: 173 ENRQTLLFSATMPADIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKTKEFEKFDVL 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + Y E +HGD+ Q++R L F+ G
Sbjct: 231 TRLL-DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGH 289
Query: 394 FNILIATDVAARGLDVPNV 412
++L+ATDVAARGLDV V
Sbjct: 290 IDVLVATDVAARGLDVSGV 308
>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
Length = 643
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|295696219|ref|YP_003589457.1| DEAD/DEAH box helicase [Kyrpidia tusciae DSM 2912]
gi|295411821|gb|ADG06313.1| DEAD/DEAH box helicase domain protein [Kyrpidia tusciae DSM 2912]
Length = 526
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/317 (43%), Positives = 197/317 (62%), Gaps = 17/317 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ +S+ + A+ G + PIQ A + +QG+D+IG+A+TGTGKT AFG+PI+
Sbjct: 4 FTDFQLSRRVQQAIDDMGFEEPSPIQAACIPLVLQGKDVIGQAQTGTGKTAAFGVPII-- 61
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
E G GR+ L+L PTRELA QV E + A + T+ +YGG I HQ+RAL
Sbjct: 62 -----EMMGTGRHVQALILTPTRELAIQVAGELRKIAKYARVRTLPIYGGQSIGHQIRAL 116
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV V+GTPGRV+D ++R L L +V+ VVLDEAD+ML +GF ED+E IL+ PQ RQ
Sbjct: 117 QQGVGVVIGTPGRVLDHLRRGTLKLDKVRTVVLDEADEMLDMGFIEDIEAILKETPQERQ 176
Query: 279 SMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
+++FSAT P ++ L +Y+KNP +TV+ G+ L D I + + E S+
Sbjct: 177 TLLFSATFPHEVKQLAVRYMKNPEHVTVNR-GEMTVPLIDQIYYKVLERNKLE--SLCRI 233
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+ +E G I+F +TKR D L A +A+ Y + LHGD+SQ+QR+R + FR+G
Sbjct: 234 IDSEDVSLG--IIFCRTKRGVDELTEALLARGYLVDGLHGDLSQAQRDRVMKKFRNGDIE 291
Query: 396 ILIATDVAARGLDVPNV 412
L+ATDVAARG+DV NV
Sbjct: 292 FLVATDVAARGIDVTNV 308
>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
Length = 643
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
Length = 663
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 254
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 255 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 313 QGVIDILVATDVVARGLDVPRI 334
>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
Length = 643
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|420151175|ref|ZP_14658314.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
gi|394772388|gb|EJF51653.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
Length = 535
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 197/320 (61%), Gaps = 9/320 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+L+
Sbjct: 62 FADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLED 121
Query: 161 IIKFNEKHG----RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+I +E NP L++ PTREL+KQV + +A L T + +YGG Q
Sbjct: 122 VIAPDEPGFDDLLNPNNPQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFEPQ 181
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE +L R+P
Sbjct: 182 ISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVP 241
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSI 333
+R +M+FSATMP + +L K++++P + DQ + + + K +
Sbjct: 242 SHRHTMLFSATMPGPVVALARKFMEHPTHIRAQDPDDQHQTVNTVKQVVYRVHSLNKVEV 301
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G+ ++F +TKR A RL + A+ + LHGD+ Q RE+ L AFR+G
Sbjct: 302 LARILQADGR-GRAVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNG 360
Query: 393 RFNILIATDVAARGLDVPNV 412
+ ++L+ATDVAARG+DV +V
Sbjct: 361 KVDVLVATDVAARGIDVDDV 380
>gi|67605637|ref|XP_666695.1| DEAD/DEAH box helicase [Cryptosporidium hominis TU502]
gi|54657739|gb|EAL36467.1| DEAD/DEAH box helicase [Cryptosporidium hominis]
Length = 678
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 219/363 (60%), Gaps = 29/363 (7%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I + +S + L RGI +LFPIQ E +D++G+A+TGTGKTLAF +P++++
Sbjct: 16 IDRFLLSDESREILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIER 75
Query: 161 IIKFN--EKHGRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQMR 216
++K + + GR PL LVL PTRELA+QV EF + VYGG+P Q++
Sbjct: 76 LLKKGKFDPNKHGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQIQ 135
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-- 274
+ GVD VVG PGRV+D I+R LN+S++ + LDEAD+ML +GF E V+ I++ +
Sbjct: 136 EIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVRKE 195
Query: 275 ---------QNR-QSMMFSATMPPWIRS-LTNKYLKNPLTVDLV-----GDSDQKLA--D 316
QN+ Q ++FSAT+PPW+++ LT + +TVD+ G+ + + A
Sbjct: 196 TGDGETHSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAARS 255
Query: 317 GISLYSIATSMYEKPSIIGQLITEHAK-GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
I +I + ++ ++G +IT +A GKCI+FT+TK+ A+ +A S C+ LHG
Sbjct: 256 RIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMRSEISKMCQVLHG 315
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRP 435
DI Q+QRE L AF++GR+ L+ATDVAARGL + +V VV++ + + T I R
Sbjct: 316 DIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDV----AVVIQLAPPRDIDTYIHRS 371
Query: 436 GKS 438
G++
Sbjct: 372 GRT 374
>gi|350533075|ref|ZP_08912016.1| ATP-dependent RNA helicase DeaD [Vibrio rotiferianus DAT722]
Length = 639
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 196/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
Length = 663
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 254
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 255 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 313 QGVIDILVATDVVARGLDVPRI 334
>gi|424809183|ref|ZP_18234568.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus SX-4]
gi|342323608|gb|EGU19392.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus SX-4]
Length = 643
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|422324449|ref|ZP_16405486.1| hypothetical protein HMPREF0737_00596 [Rothia mucilaginosa M508]
gi|353343971|gb|EHB88284.1| hypothetical protein HMPREF0737_00596 [Rothia mucilaginosa M508]
Length = 638
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 198/323 (61%), Gaps = 9/323 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + QDI ALA GI+ FPIQ+ L A+ G+D+IG+A+TGTGKTL FG+P + +
Sbjct: 74 FADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQR 133
Query: 161 IIKFNEKHGRGRN----PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ 214
++ +++ P L+L PTRELA QV ++ +A + +YGG PI Q
Sbjct: 134 VVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQ 193
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L G++ VGTPGR+IDL ++ LNL +V+ VVLDEAD+ML +GF VE IL LP
Sbjct: 194 AELLRRGLEVAVGTPGRIIDLCQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLP 253
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD-QKLADGISLYSIATSMYEKPSI 333
++RQSM+FSATMP + ++ +Y+ P+ + D K I +K +
Sbjct: 254 EDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEM 313
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + G+ ++FT+TKRDA R+A + + + PLHGD++Q RE+ L AFR G
Sbjct: 314 IGRILRATGR-GRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRSG 372
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ +IL+ATDVAARG+DV +V V
Sbjct: 373 KVDILVATDVAARGIDVEDVTHV 395
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 147/393 (37%), Positives = 224/393 (56%), Gaps = 41/393 (10%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L + +++ ALA G + PIQ+A + P + G D++G+A TGTGKT AF +P+L +
Sbjct: 18 FSELGLRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHR 77
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + + RG P +VL PTRELA QV + L + VYGG +S
Sbjct: 78 IRDGERGERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSR 137
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+RAL+ GVD VV TPGR +D + R +L+LS ++ VVLDEAD+ML +GFAED++ ILER
Sbjct: 138 QLRALEEGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTILERT 197
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY----- 328
P +RQ+M+FSATMPP I L +YL++P ++L S + DG SI + Y
Sbjct: 198 PDDRQTMLFSATMPPRIAGLVRRYLRDPRRIEL---SRAESLDG-DAASITQTAYVVPRG 253
Query: 329 EKPSIIGQLI---TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
KP+ +G+++ T A +VF +T+ + DRL M + Y E LHG + Q QR R
Sbjct: 254 HKPAALGRVLDIETPEA----TVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQRNR 309
Query: 385 TLSAFRDGRFNILIATDVAARGLDV--------------PNVDLVELVVLERKEVQFLST 430
+ R G ++++ATDVAARGLD+ P V + + + R Q +
Sbjct: 310 VVGRLRTGTADLVVATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGSAI 369
Query: 431 QISRPGKSRVLSEMLDADLLSSQGSPLKEVETC 463
++ PG+ R++ + + ++ Q P++++ T
Sbjct: 370 TLAEPGEHRMIKAI---ERVTGQPVPIRKLPTV 399
>gi|417948598|ref|ZP_12591742.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809545|gb|EGU44662.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 638
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 195/318 (61%), Gaps = 13/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L I +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+ Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTN--HTVDKVAQNFWVVKGVEKDEAMS 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDV ARGLDVP +
Sbjct: 297 DILVATDVVARGLDVPRI 314
>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
Length = 595
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 195/323 (60%), Gaps = 13/323 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFGIP
Sbjct: 29 EAMKFDTLQLDERILRAVTEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIP 88
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISH 213
+L K+ + + +VL PTRELA QV +E + I V YGG I
Sbjct: 89 LLQKV------DPKVKKLQAIVLLPTRELAIQVAEEVRRLGKFMHGIKVLPIYGGQDIVK 142
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G ++GTPGRV+D ++R + L V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 143 QIRSLKDGTQVIIGTPGRVMDHMRRKTVKLDYVNTVVLDEADEMLNMGFLEDMETILSQL 202
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMPP I + K+ K P+TV +V + ++ Y K +
Sbjct: 203 PEERQTLMFSATMPPAIAEIARKFQKEPVTVRVV--KKELTVPKVTQYYYEVKPKNKVEV 260
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A IVF TK+ D L A+ + Y E LHGD+ Q QR+R +++FR+G
Sbjct: 261 MCRLLDLYAP-KLSIVFCNTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNG 319
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
R +IL+ATDVAARG+DV +V+ V
Sbjct: 320 RTDILVATDVAARGIDVGDVEAV 342
>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
8102]
Length = 598
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 202/340 (59%), Gaps = 16/340 (4%)
Query: 81 QSAVDDYVAYDDSSKDE-GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
Q + D + D+ + E G D S+ ++ LA +G S+ PIQKA M GRD+
Sbjct: 28 QGSADVFTTTIDAQQPESGFD--GFGFSEALLKTLADKGYSEPSPIQKAAFPELMLGRDL 85
Query: 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHES 196
+G+A+TGTGKT AF +P+L+++ + P LVLAPTRELA QV K +
Sbjct: 86 VGQAQTGTGKTAAFALPLLERLASGQ------KTPQALVLAPTRELAMQVADSFKAYSAG 139
Query: 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
P L + VYGGT Q+ L GVD VVGTPGRV+D +++ L+ S ++ +VLDEAD+
Sbjct: 140 HPHLKVLAVYGGTDFRSQINTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADE 199
Query: 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
ML +GF +DVE ILE+LPQ RQ ++FSATMPP IR L+ +YLK+P V + DQ+
Sbjct: 200 MLRMGFIDDVEWILEQLPQERQVVLFSATMPPEIRRLSKRYLKDPAEV-TIRTKDQE-GK 257
Query: 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHG 375
I SI M K + Q + + G I+F +TK +A + A + L+G
Sbjct: 258 RIRQRSITVPMPHKLEAL-QRVLDACGGEGVIIFARTKAITLTVAETLEAGGHQVAVLNG 316
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
D+ Q+QRERT+ R G +IL+ATDVAARGLDV + LV
Sbjct: 317 DVPQNQRERTVERLRSGSVDILVATDVAARGLDVDRIGLV 356
>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
Length = 639
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 194/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P+ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 176 QAPETAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
Length = 647
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 196/330 (59%), Gaps = 11/330 (3%)
Query: 95 KDEGLDISKLDI---SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
K +G D S L + ++ L RGI+ LFPIQ+ E G D+IG+ RTG+GKTL
Sbjct: 18 KIKGNDESNLKVFIKNKQTRKVLESRGIANLFPIQQQCFETIYNGDDIIGQDRTGSGKTL 77
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGG 208
A+ +PIL++I K + NP LVL PTRELA QV EF+ +YGG
Sbjct: 78 AYCLPILERIRGLGLKQNK--NPYVLVLLPTRELAIQVTTEFNSILHKENEYRIYSIYGG 135
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
T + +Q+ + G + VVGTPGR+ DL++R L L E+Q VVLDEADQML+ GF E++E
Sbjct: 136 TDLRNQIDQVRQGCEIVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEK 195
Query: 269 ILERLPQNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
I+ + Q ++FSAT+P W++ L+ KY++ N ++L+ + + + + Y++ +
Sbjct: 196 IMSYFNDRKIQMLLFSATIPDWVKELSQKYMEANTKHINLIKRHETQTSTTVKHYALQCA 255
Query: 327 MYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERT 385
+ IG +++ + + + I+F +TKR+ + + +PLHGDI Q QR T
Sbjct: 256 KNQLTGAIGDVVSVYGGRHARTIIFCETKRECNEIILHSKLPAETQPLHGDIPQQQRTVT 315
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLV 415
F++G+F L+AT+VAARGLD P VDL+
Sbjct: 316 FEGFKNGKFKCLVATNVAARGLDFPQVDLI 345
>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
Length = 653
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 12 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 71
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 72 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 125
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 126 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 185
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 186 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 244
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 245 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 302
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 303 QGVIDILVATDVVARGLDVPRI 324
>gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase [Halothermothrix orenii H 168]
gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
168]
Length = 527
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 198/319 (62%), Gaps = 15/319 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L+IS++I+ A+ G + PIQ + P + G+D+IG+A+TGTGKT AFGIP+L+KI
Sbjct: 7 SELNISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGIPLLEKI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRAL 218
R + P ++L PTRELA QV +E A SL T+ VYGG I Q++AL
Sbjct: 67 ------DTRNKKPQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVYGGQSIKRQIKAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV ++GTPGRV+D ++R LNLS + FVVLDEAD ML +GF +D++ IL+ +P +RQ
Sbjct: 121 KKGVQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQ 180
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA-DGISLYSIATSMYEKPSIIGQL 337
++ FSAT+P I L+ +Y K + + + +KL GI Y +K ++ +L
Sbjct: 181 TLFFSATIPETILDLSKRYQKKSQFIKI---AHEKLTVPGIEQYYYEVRRSDKLKVLTRL 237
Query: 338 ITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
I ++ G ++F T++ + L A+ Y + LHG +Q+QR+R + FR+G I
Sbjct: 238 IDLYSP-GLSLIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEI 296
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARG+DV V+ V
Sbjct: 297 LVATDVAARGIDVNGVEAV 315
>gi|410672237|ref|YP_006924608.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
gi|409171365|gb|AFV25240.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
Length = 431
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 139/351 (39%), Positives = 212/351 (60%), Gaps = 25/351 (7%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + S+L++SQ I+ A+ G + PIQ + M+G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ESITFSQLNLSQSIINAIKDIGYEEPTPIQAQAIPLIMEGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
L+ + +FN+ LVL PTRELA QV E + + L + +YGG +
Sbjct: 62 ALELVDPEFNDVQ-------VLVLCPTRELANQVADELTKLSAYQKLRILPIYGGQSLDR 114
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV ++GTPGRV+D I+R LNL V VVLDEAD+ML +GF ED+E+IL ++
Sbjct: 115 QIKALRRGVHIIIGTPGRVMDHIERKTLNLENVAMVVLDEADEMLDMGFREDIELILTKV 174
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE---- 329
P +RQ+++FSATMP I LT ++ ++P V + + +++ ++ S +E
Sbjct: 175 PDDRQTILFSATMPALIMKLTKRFQRDPQLV-------KTIHKKVTVPNVEQSYFEVKFH 227
Query: 330 -KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
KP ++ +LI + +VF TKR D L + + Y + LHGD+ Q QRER ++
Sbjct: 228 TKPEVLCRLIDIYDVKS-SLVFCNTKRAVDELVDTLKTRGYLADGLHGDMKQQQRERVMA 286
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+FR G L+ATDVAARG+DV N+++V L + E ++ +I R G++
Sbjct: 287 SFRKGDIETLVATDVAARGIDVENIEVVFNFDLPQDEESYVH-RIGRTGRA 336
>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
Length = 646
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 195/318 (61%), Gaps = 13/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L I +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+ Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTN--HTVDKVAQNFWVVKGVEKDEAMS 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDV ARGLDVP +
Sbjct: 297 DILVATDVVARGLDVPRI 314
>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 607
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 142/315 (45%), Positives = 193/315 (61%), Gaps = 15/315 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
S+ ++ LA +G S PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 64 FSEALLKTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL---- 119
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
+ GR + P LVLAPTRELA QV F A P L + VYGGT Q+ L GV
Sbjct: 120 -ESGR-KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGV 177
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGRV+D +++ L+ S + +VLDEAD+ML +GF +DVE ILE+LP+ RQ ++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLF 237
Query: 283 SATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
SATMPP IR L+ +YL +P V + D D KL I +I M K + Q + +
Sbjct: 238 SATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKL---IRQRAITVPMSHKLEAL-QRVLDA 293
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
G I+F +TK +A + A + L+GD+ Q+QRERT+ R G +IL+AT
Sbjct: 294 CGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDILVAT 353
Query: 401 DVAARGLDVPNVDLV 415
DVAARGLDV + LV
Sbjct: 354 DVAARGLDVERIGLV 368
>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
gi|360037704|ref|YP_004939466.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 str.
2010EL-1786]
gi|379744210|ref|YP_005335262.1| cold-shock DEAD-box protein A [Vibrio cholerae IEC224]
gi|417811754|ref|ZP_12458415.1| cold-shock DEAD box protein A [Vibrio cholerae HC-49A2]
gi|417816943|ref|ZP_12463573.1| cold-shock DEAD box protein A [Vibrio cholerae HCUF01]
gi|418330362|ref|ZP_12941343.1| cold-shock DEAD box protein A [Vibrio cholerae HC-06A1]
gi|418337842|ref|ZP_12946737.1| cold-shock DEAD box protein A [Vibrio cholerae HC-23A1]
gi|418341896|ref|ZP_12948726.1| cold-shock DEAD box protein A [Vibrio cholerae HC-28A1]
gi|418349516|ref|ZP_12954248.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43A1]
gi|418353968|ref|ZP_12956693.1| cold-shock DEAD box protein A [Vibrio cholerae HC-61A1]
gi|419826238|ref|ZP_14349741.1| dbpA RNA binding domain protein [Vibrio cholerae CP1033(6)]
gi|421317541|ref|ZP_15768111.1| cold-shock DEAD box protein A [Vibrio cholerae CP1032(5)]
gi|421320180|ref|ZP_15770738.1| cold-shock DEAD box protein A [Vibrio cholerae CP1038(11)]
gi|421324222|ref|ZP_15774749.1| cold-shock DEAD box protein A [Vibrio cholerae CP1041(14)]
gi|421327193|ref|ZP_15777711.1| cold-shock DEAD box protein A [Vibrio cholerae CP1042(15)]
gi|421332285|ref|ZP_15782764.1| cold-shock DEAD box protein A [Vibrio cholerae CP1046(19)]
gi|421335923|ref|ZP_15786386.1| cold-shock DEAD box protein A [Vibrio cholerae CP1048(21)]
gi|421339731|ref|ZP_15790165.1| cold-shock DEAD box protein A [Vibrio cholerae HC-20A2]
gi|421346512|ref|ZP_15796896.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46A1]
gi|422889725|ref|ZP_16932194.1| cold-shock DEAD box protein A [Vibrio cholerae HC-40A1]
gi|422898635|ref|ZP_16935924.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48A1]
gi|422904683|ref|ZP_16939575.1| cold-shock DEAD box protein A [Vibrio cholerae HC-70A1]
gi|422915030|ref|ZP_16949479.1| cold-shock DEAD box protein A [Vibrio cholerae HFU-02]
gi|422927691|ref|ZP_16960635.1| cold-shock DEAD box protein A [Vibrio cholerae HC-38A1]
gi|423146762|ref|ZP_17134250.1| cold-shock DEAD box protein A [Vibrio cholerae HC-19A1]
gi|423147752|ref|ZP_17135130.1| cold-shock DEAD box protein A [Vibrio cholerae HC-21A1]
gi|423151539|ref|ZP_17138770.1| cold-shock DEAD box protein A [Vibrio cholerae HC-22A1]
gi|423158165|ref|ZP_17145178.1| cold-shock DEAD box protein A [Vibrio cholerae HC-32A1]
gi|423161967|ref|ZP_17148839.1| cold-shock DEAD box protein A [Vibrio cholerae HC-33A2]
gi|423163057|ref|ZP_17149880.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48B2]
gi|423732922|ref|ZP_17706165.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A1]
gi|423741886|ref|ZP_17710664.1| dbpA RNA binding domain protein [Vibrio cholerae HC-50A2]
gi|423910317|ref|ZP_17728305.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62A1]
gi|423919387|ref|ZP_17729217.1| dbpA RNA binding domain protein [Vibrio cholerae HC-77A1]
gi|424002001|ref|ZP_17745086.1| cold-shock DEAD box protein A [Vibrio cholerae HC-17A2]
gi|424004242|ref|ZP_17747248.1| cold-shock DEAD box protein A [Vibrio cholerae HC-37A1]
gi|424022173|ref|ZP_17761856.1| cold-shock DEAD box protein A [Vibrio cholerae HC-62B1]
gi|424028957|ref|ZP_17768508.1| cold-shock DEAD box protein A [Vibrio cholerae HC-69A1]
gi|424588443|ref|ZP_18027939.1| cold-shock DEAD box protein A [Vibrio cholerae CP1030(3)]
gi|424593192|ref|ZP_18032551.1| cold-shock DEAD box protein A [Vibrio cholerae CP1040(13)]
gi|424597121|ref|ZP_18036338.1| cold-shock DEAD box protein A [Vibrio Cholerae CP1044(17)]
gi|424603945|ref|ZP_18042996.1| cold-shock DEAD box protein A [Vibrio cholerae CP1047(20)]
gi|424604697|ref|ZP_18043684.1| cold-shock DEAD box protein A [Vibrio cholerae CP1050(23)]
gi|424608524|ref|ZP_18047402.1| cold-shock DEAD box protein A [Vibrio cholerae HC-39A1]
gi|424615297|ref|ZP_18054013.1| cold-shock DEAD box protein A [Vibrio cholerae HC-41A1]
gi|424619146|ref|ZP_18057751.1| cold-shock DEAD box protein A [Vibrio cholerae HC-42A1]
gi|424620063|ref|ZP_18058611.1| cold-shock DEAD box protein A [Vibrio cholerae HC-47A1]
gi|424642688|ref|ZP_18080466.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A2]
gi|424650804|ref|ZP_18088350.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A2]
gi|424654585|ref|ZP_18091903.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A2]
gi|440711549|ref|ZP_20892190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 4260B]
gi|443505549|ref|ZP_21072438.1| cold-shock DEAD box protein A [Vibrio cholerae HC-64A1]
gi|443509457|ref|ZP_21076152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-65A1]
gi|443513286|ref|ZP_21079856.1| cold-shock DEAD box protein A [Vibrio cholerae HC-67A1]
gi|443517121|ref|ZP_21083566.1| cold-shock DEAD box protein A [Vibrio cholerae HC-68A1]
gi|443520773|ref|ZP_21087105.1| cold-shock DEAD box protein A [Vibrio cholerae HC-71A1]
gi|443521684|ref|ZP_21087960.1| cold-shock DEAD box protein A [Vibrio cholerae HC-72A2]
gi|443529708|ref|ZP_21095725.1| cold-shock DEAD box protein A [Vibrio cholerae HC-7A1]
gi|443533398|ref|ZP_21099344.1| cold-shock DEAD box protein A [Vibrio cholerae HC-80A1]
gi|443537075|ref|ZP_21102933.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A1]
gi|449057861|ref|ZP_21736157.1| Cold-shock DEAD-box protein A [Vibrio cholerae O1 str. Inaba G4222]
gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
gi|340040093|gb|EGR01066.1| cold-shock DEAD box protein A [Vibrio cholerae HCUF01]
gi|340044574|gb|EGR05522.1| cold-shock DEAD box protein A [Vibrio cholerae HC-49A2]
gi|341627743|gb|EGS53041.1| cold-shock DEAD box protein A [Vibrio cholerae HC-70A1]
gi|341629303|gb|EGS54468.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48A1]
gi|341629533|gb|EGS54685.1| cold-shock DEAD box protein A [Vibrio cholerae HC-40A1]
gi|341632554|gb|EGS57419.1| cold-shock DEAD box protein A [Vibrio cholerae HFU-02]
gi|341643170|gb|EGS67467.1| cold-shock DEAD box protein A [Vibrio cholerae HC-38A1]
gi|356417845|gb|EHH71456.1| cold-shock DEAD box protein A [Vibrio cholerae HC-19A1]
gi|356424073|gb|EHH77493.1| cold-shock DEAD box protein A [Vibrio cholerae HC-06A1]
gi|356424755|gb|EHH78152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-21A1]
gi|356431226|gb|EHH84431.1| cold-shock DEAD box protein A [Vibrio cholerae HC-23A1]
gi|356435650|gb|EHH88800.1| cold-shock DEAD box protein A [Vibrio cholerae HC-32A1]
gi|356436734|gb|EHH89844.1| cold-shock DEAD box protein A [Vibrio cholerae HC-22A1]
gi|356439786|gb|EHH92749.1| cold-shock DEAD box protein A [Vibrio cholerae HC-28A1]
gi|356440797|gb|EHH93729.1| cold-shock DEAD box protein A [Vibrio cholerae HC-33A2]
gi|356446378|gb|EHH99178.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43A1]
gi|356455033|gb|EHI07680.1| cold-shock DEAD box protein A [Vibrio cholerae HC-61A1]
gi|356457236|gb|EHI09803.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48B2]
gi|356648858|gb|AET28912.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796804|gb|AFC60274.1| cold-shock DEAD-box protein A [Vibrio cholerae IEC224]
gi|395919999|gb|EJH30822.1| cold-shock DEAD box protein A [Vibrio cholerae CP1032(5)]
gi|395922236|gb|EJH33055.1| cold-shock DEAD box protein A [Vibrio cholerae CP1041(14)]
gi|395925068|gb|EJH35870.1| cold-shock DEAD box protein A [Vibrio cholerae CP1038(11)]
gi|395931083|gb|EJH41829.1| cold-shock DEAD box protein A [Vibrio cholerae CP1046(19)]
gi|395934118|gb|EJH44857.1| cold-shock DEAD box protein A [Vibrio cholerae CP1042(15)]
gi|395935605|gb|EJH46340.1| cold-shock DEAD box protein A [Vibrio cholerae CP1048(21)]
gi|395941290|gb|EJH51968.1| cold-shock DEAD box protein A [Vibrio cholerae HC-20A2]
gi|395948039|gb|EJH58694.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46A1]
gi|395955100|gb|EJH65704.1| cold-shock DEAD box protein A [Vibrio cholerae HC-42A1]
gi|395966596|gb|EJH76713.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A2]
gi|395967297|gb|EJH77393.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A2]
gi|395968492|gb|EJH78444.1| cold-shock DEAD box protein A [Vibrio cholerae CP1030(3)]
gi|395969359|gb|EJH79241.1| cold-shock DEAD box protein A [Vibrio cholerae CP1047(20)]
gi|395978783|gb|EJH88152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-47A1]
gi|408006419|gb|EKG44567.1| cold-shock DEAD box protein A [Vibrio cholerae HC-41A1]
gi|408012419|gb|EKG50198.1| cold-shock DEAD box protein A [Vibrio cholerae HC-39A1]
gi|408039736|gb|EKG76005.1| cold-shock DEAD box protein A [Vibrio cholerae CP1040(13)]
gi|408046854|gb|EKG82518.1| cold-shock DEAD box protein A [Vibrio Cholerae CP1044(17)]
gi|408048545|gb|EKG83951.1| cold-shock DEAD box protein A [Vibrio cholerae CP1050(23)]
gi|408059272|gb|EKG94040.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A2]
gi|408609028|gb|EKK82411.1| dbpA RNA binding domain protein [Vibrio cholerae CP1033(6)]
gi|408616441|gb|EKK89595.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A1]
gi|408646650|gb|EKL18233.1| dbpA RNA binding domain protein [Vibrio cholerae HC-50A2]
gi|408649426|gb|EKL20739.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62A1]
gi|408661260|gb|EKL32245.1| dbpA RNA binding domain protein [Vibrio cholerae HC-77A1]
gi|408847857|gb|EKL87915.1| cold-shock DEAD box protein A [Vibrio cholerae HC-17A2]
gi|408850986|gb|EKL90926.1| cold-shock DEAD box protein A [Vibrio cholerae HC-37A1]
gi|408872348|gb|EKM11568.1| cold-shock DEAD box protein A [Vibrio cholerae HC-69A1]
gi|408876938|gb|EKM16042.1| cold-shock DEAD box protein A [Vibrio cholerae HC-62B1]
gi|439973036|gb|ELP49279.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 4260B]
gi|443429993|gb|ELS72614.1| cold-shock DEAD box protein A [Vibrio cholerae HC-64A1]
gi|443433860|gb|ELS80072.1| cold-shock DEAD box protein A [Vibrio cholerae HC-65A1]
gi|443437457|gb|ELS87240.1| cold-shock DEAD box protein A [Vibrio cholerae HC-67A1]
gi|443441280|gb|ELS94648.1| cold-shock DEAD box protein A [Vibrio cholerae HC-68A1]
gi|443445532|gb|ELT02252.1| cold-shock DEAD box protein A [Vibrio cholerae HC-71A1]
gi|443452146|gb|ELT12374.1| cold-shock DEAD box protein A [Vibrio cholerae HC-72A2]
gi|443459278|gb|ELT26672.1| cold-shock DEAD box protein A [Vibrio cholerae HC-7A1]
gi|443463363|gb|ELT34368.1| cold-shock DEAD box protein A [Vibrio cholerae HC-80A1]
gi|443467084|gb|ELT41740.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A1]
gi|448262884|gb|EMB00131.1| Cold-shock DEAD-box protein A [Vibrio cholerae O1 str. Inaba G4222]
Length = 643
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
Length = 663
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 254
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 255 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 313 QGVIDILVATDVVARGLDVPRI 334
>gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
Length = 643
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++ + ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|340502033|gb|EGR28753.1| hypothetical protein IMG5_169500 [Ichthyophthirius multifiliis]
Length = 727
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 215/365 (58%), Gaps = 24/365 (6%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
++ D+G ++ K ++ + L +R I+ LFPIQ+ + G+D+IG+ RTG+GKTL
Sbjct: 57 EAQHDKG-NMQKYIKNKKTIDLLNKRNITYLFPIQEHCFKAIQAGKDVIGKDRTGSGKTL 115
Query: 152 AFGIPILDKIIK--FNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVY 206
+ +P+++K+ + F R ++P L+L PTREL QV E S + +Y
Sbjct: 116 GYSLPLIEKLREDGFFGVIKRRQSPYVLILVPTRELCIQVANEISSLKHSDNEFRVLQIY 175
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GGT I Q L G + VGTPGR+ID R L LS ++ V+LDEADQML+ GF +D+
Sbjct: 176 GGTDIREQTNQLRDGCEIAVGTPGRIIDQFDRGNLILSNLKTVILDEADQMLNFGFQDDI 235
Query: 267 EVILERLPQNR--------QSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLAD 316
E I + + ++R Q+++FSAT+P W+ ++ KYL +N + +DLV ++D K +
Sbjct: 236 EKIFKNIVESRESLGLPRTQNLLFSATVPSWVHEISRKYLQEQNIVMIDLVRNNDNKTSQ 295
Query: 317 GISLYSIATSMYEKPSIIGQLITEHAKGG--KCIVFTQTKRDADRLAHAMAKSYNCEPLH 374
G++ +I Y++ IG +I + G + I+F +TK +A+ + + + LH
Sbjct: 296 GVTHLAINCPFYQRTEAIGDVILCYGGGAHSRVIIFCETKNEANEIMLKANIKQDLQVLH 355
Query: 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLE-RKEVQFLSTQIS 433
GDI Q QRE T FR+G+F L+AT+VA+RGLD+P VDL+ V LE KE L T I
Sbjct: 356 GDIPQKQREITFQGFREGKFKCLVATNVASRGLDIPEVDLI--VQLEPPKE---LDTYIH 410
Query: 434 RPGKS 438
R G++
Sbjct: 411 RAGRT 415
>gi|429728801|ref|ZP_19263505.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
gi|429147776|gb|EKX90798.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
Length = 547
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 141/343 (41%), Positives = 205/343 (59%), Gaps = 14/343 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ ++L + ++I A+A G + PIQ + ++G D+IG+A+TGTGKT AF IP+L+
Sbjct: 5 NFNELAVKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLE 64
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMR 216
KI +++ +VL PTRELA QV +E + A L T+ +YGG PI Q++
Sbjct: 65 KIDPSDKRLQ------AIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIK 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV ++GTPGRVID I R L S V+ VV+DEAD+ML +GF ED+E IL PQ
Sbjct: 119 ALKGGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSSTPQE 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+ +FSATMP I LT KY K P+ + +V + + I + I T K ++ +
Sbjct: 179 RQTSLFSATMPKAILELTQKYQKEPVHIKVV--RKELTVNNIKQFYIETRKSNKLEVLTR 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI + +VFT TK+ AD L + A+ Y + LHGD+ Q QR+ + FR G +
Sbjct: 237 LIDVY-NPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTID 295
Query: 396 ILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
IL+ATDVAARG+DV +V+ V L + E ++ +I R G++
Sbjct: 296 ILVATDVAARGIDVDDVECVINYELPQDE-EYYVHRIGRTGRA 337
>gi|375263387|ref|YP_005025617.1| cold-shock DEAD-box protein A [Vibrio sp. EJY3]
gi|369843814|gb|AEX24642.1| cold-shock DEAD-box protein A [Vibrio sp. EJY3]
Length = 639
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGVDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++ + ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|407835252|gb|EKF99205.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 642
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 199/340 (58%), Gaps = 15/340 (4%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A ++ S G S D+ + V AL +GI+ LFP+Q E M+G +++ +ARTG+G
Sbjct: 40 APNNGSALAGRPFSDFDLLPNTVEALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSG 99
Query: 149 KTLAFGIPILDKI---IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
KTLAFGIPI++K+ K NE+ RGR P ++ PTRELA QV + +
Sbjct: 100 KTLAFGIPIVEKLARMTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKGFVVTAL 159
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q RAL GVD VV TPGR D +++ L V+ V LDEAD ML +GF +D
Sbjct: 160 YGGVAYSTQERALYSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDD 219
Query: 266 VEVILERLPQNR---------QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
+E++L+++ + Q+++FSAT+P W+ + + K +D+VG + A+
Sbjct: 220 IELLLQKVAEQNGSTEGNPTHQTLLFSATVPEWVHTCSFIPRKKEF-IDMVGQGTMRAAN 278
Query: 317 GISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHG 375
I Y E ++ L+ ++ + G+ +VFT TK++ L+ K + + LHG
Sbjct: 279 TIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTK-LDSQCLHG 337
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
D+ Q QRE T+ +FRD +F++LIATDVAARGLD+P VDLV
Sbjct: 338 DMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLV 377
>gi|379726995|ref|YP_005319180.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
gi|376317898|dbj|BAL61685.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
Length = 502
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 133/317 (41%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L +S ++ A+ R G + PIQ + A++G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELGLSSQLLLAIERSGFEEATPIQAETIPLALKGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N+K LV+APTRELA Q ++E + + VYGG I Q+R
Sbjct: 61 EKIDTKNQKL------QGLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL VVGTPGR++D + R L L ++ +VLDEAD+ML++GF ED+E I+ ++P+N
Sbjct: 115 ALKERPQIVVGTPGRLLDHLNRRTLKLEAIETLVLDEADEMLNMGFLEDIEKIISQVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+++ K++KNP V + + + AD I Y + + YEK I+ +
Sbjct: 175 RQTLLFSATMPTAIKNIGIKFMKNPDHVKI--KAKEMTADLIDQYYVRSKDYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + + Y E +HGD+SQ +R L AF++G +
Sbjct: 233 LLDVQTP-ELTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|352516353|ref|YP_004885670.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
gi|348600460|dbj|BAK93506.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
Length = 505
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 197/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++SQ+++ A+ + G + PIQ + AM+G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELNLSQELLDAVTKIGFEEATPIQAETIPLAMEGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
DKI G+ + LV+APTRELA Q ++E + VYGG I Q+R
Sbjct: 61 DKI------DGKKKQIQGLVIAPTRELAIQTQEELFRLGKEKKIRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R L LS V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 115 QLKDNPQIVVGTPGRMLDHINRRTLKLSTVETLVLDEADEMLNMGFLEDIEKIIAQVPEQ 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+S+ K++K+ V + + + AD I Y + YEK I+ +
Sbjct: 175 RQTLLFSATMPKEIKSIGVKFMKDSHHVRI--KAKEMTADSIDQYYVKAKDYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L ++F +TKR D +A + A+ Y E +HGD+SQ +R L +F+ GR +
Sbjct: 233 LFDVQLP-ELTLIFARTKRRVDEIARGLEARGYKAEGIHGDLSQQKRMNILQSFKKGRLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|443471730|ref|ZP_21061785.1| Cold-shock DEAD-box protein A [Pseudomonas pseudoalcaligenes KF707]
gi|442901875|gb|ELS27614.1| Cold-shock DEAD-box protein A [Pseudomonas pseudoalcaligenes KF707]
Length = 558
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 137/315 (43%), Positives = 198/315 (62%), Gaps = 13/315 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I +++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALGIHPNVLAAISAVGYEEPSPIQSQSIPVILAGHDMIGQAQTGTGKTAAFALPILSRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P L+ I VYGG P+ Q++AL
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYAKQMPGLNVIAVYGGAPMGPQLKAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR+ D ++R+ L+ VQ +VLDEAD+ML +GF ED+EVI E LP++RQ
Sbjct: 123 RQGAQVIVATPGRLCDHLRRDERLLTTVQQLVLDEADEMLKLGFMEDLEVIFEALPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+PP IRS+ ++LK+P V + + Q +A I + +K + + +L+
Sbjct: 183 SVLFSATLPPSIRSIAERHLKSPQHVKIAAKT-QTVAR-IEQAHLMVHADQKTAAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E + I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARG+DVP +
Sbjct: 300 VATDVAARGIDVPRI 314
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 199/320 (62%), Gaps = 19/320 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + +IS+ ++ A+ G PIQ+ V+ ++G D+IG+A+TGTGKT AFGIPIL
Sbjct: 2 MTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPIL 61
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
+K+ R +N ++L PTRELA QV E + + + T+ VYGG I Q++
Sbjct: 62 EKL-------KRTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD VVGTPGRV+D + R L+LS++ VLDEAD+ML +GF ED+E I++ +
Sbjct: 115 QLKRGVDIVVGTPGRVLDHVNRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI--I 334
RQ+++FSATMPP IR L+NKY+ +P V + + S+ + + EK + +
Sbjct: 175 RQTLLFSATMPPPIRKLSNKYMNSPEQVTI----SKSEVTAPSINQVYYKVLEKNKLDSL 230
Query: 335 GQLI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+LI +E+ G I+F +TK+ LA A+ A+ Y + LHGD++QSQR+ + FRD
Sbjct: 231 CRLIDSENTDLG--IIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDS 288
Query: 393 RFNILIATDVAARGLDVPNV 412
+ LIATDVAARG+DV NV
Sbjct: 289 SIDFLIATDVAARGIDVQNV 308
>gi|427391479|ref|ZP_18885885.1| hypothetical protein HMPREF9233_01388 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732122|gb|EKU94934.1| hypothetical protein HMPREF9233_01388 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 567
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 207/346 (59%), Gaps = 20/346 (5%)
Query: 85 DDYVAYDDSS-KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRA 143
DD VA ++++ ++E + +S+++ ALA GI FPIQ L A+ D+IG+A
Sbjct: 15 DDAVAVENATGQEETRTFADFGVSEEVTRALADEGIIHPFPIQALTLPVALDRHDIIGQA 74
Query: 144 RTGTGKTLAFGIPILDKIIKFNEKHGRG---RN---PLCLVLAPTRELAKQVEKEFHESA 197
+TGTGKTL FGIP+L+ I E+ +N P L + PTRELAKQV E +A
Sbjct: 75 KTGTGKTLGFGIPMLENTIGPGEEGWEKIPEKNQGLPQGLAILPTRELAKQVANELRMAA 134
Query: 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255
S+ + +YGG Q AL G + VVGTPGR+IDL++ +L L V+ +VLDEAD
Sbjct: 135 AHRSVRIVDIYGGRAYEPQQEALRRGAEIVVGTPGRIIDLMRHGSLRLDHVKTLVLDEAD 194
Query: 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ML +GF EDVE IL R+P+ R +M+FSATMP + S+ +Y+ P + D
Sbjct: 195 EMLDLGFLEDVETILSRVPERRHTMLFSATMPGPVISMARRYMSKPTHIRASAPGD---- 250
Query: 316 DGISLYSIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYN 369
D ++ +I +Y K +I +++ + G+ ++FT+TKR A RLA + + +
Sbjct: 251 DTHTVKNIRQIVYRAHALNKDEVIARILQARGR-GRTLIFTRTKRSAARLAEDLERRGFA 309
Query: 370 CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
LHGD+ Q RE+ L AFR+G+ ++L+ATDVAARG+DV +V V
Sbjct: 310 TGALHGDLGQGAREQALHAFRNGKVDVLVATDVAARGIDVDDVTHV 355
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 205/341 (60%), Gaps = 14/341 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +S++I A+ G + PIQ + ++G D+IG+A+TGTGKT +F IPIL+ I
Sbjct: 7 NELQVSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILENI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRAL 218
+ N R +VL PTRELA QV +E + A + T+ +YGG PI Q++AL
Sbjct: 67 DRDN------RKLQAIVLCPTRELAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQIKAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV +GTPGRVID I R L L +V+ VVLDEAD+ML +GF ED+E IL +P+ RQ
Sbjct: 121 KGGVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVPEERQ 180
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMP I LT KY K+P+ + +V + I Y I T K ++ +L+
Sbjct: 181 TALFSATMPKAILELTKKYQKDPVHIKVVRKT--LTVSNIKQYYIETRKSNKLEVLTRLL 238
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ +VFT TK+ AD L ++ A+ Y + LHGD+ Q QR+ + FR G +IL
Sbjct: 239 DVY-NPKLTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDIL 297
Query: 398 IATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+ATDVAARG+D+ +V+ V L + + ++ +I R G++
Sbjct: 298 VATDVAARGIDIDDVECVINYELPQDD-EYYVHRIGRTGRA 337
>gi|409438235|ref|ZP_11265322.1| RNA helicase [Rhizobium mesoamericanum STM3625]
gi|408750101|emb|CCM76489.1| RNA helicase [Rhizobium mesoamericanum STM3625]
Length = 546
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 197/328 (60%), Gaps = 14/328 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI K PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIEKPTPIQEKAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K+I E+ R L+LAPTREL Q+ + L V GG I+ Q
Sbjct: 63 KLIP-EERRPDNRTTRTLILAPTRELVNQIAQNLKNFLRKSHLRINVVVGGVSINKQQLQ 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 122 LEKGTDILVATPGRLLDLVARRAIGLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL NP+TV++ K AD + Y +K ++ +
Sbjct: 182 QTMLFSATMPKSIADLAGEYLTNPVTVEVTPPG--KAADKVEQYVHFVNGKNDKTDLLKK 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 240 SLTENPD-GRAIVFLRTKHGAEKLMKHLDHVGYSVASIHGNKSQGQRERALKAFRDGDIK 298
Query: 396 ILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 299 TLIATDVAARGIDIPAVSHVYNYDLPEV 326
>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
Length = 547
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/343 (41%), Positives = 205/343 (59%), Gaps = 14/343 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ ++L + ++I A+A G + PIQ + ++G D+IG+A+TGTGKT AF IP+L+
Sbjct: 5 NFNELAVKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLE 64
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMR 216
KI +++ +VL PTRELA QV +E + A L T+ +YGG PI Q++
Sbjct: 65 KIDPSDKRLQ------AIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIK 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV ++GTPGRVID I R L S V+ VV+DEAD+ML +GF ED+E IL PQ
Sbjct: 119 ALKGGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSSTPQE 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+ +FSATMP I LT KY K P+ + +V + + I + I T K ++ +
Sbjct: 179 RQTSLFSATMPKAILELTQKYQKEPVHIKVV--RKELTVNNIKQFYIETRKSNKLEVLTR 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI + +VFT TK+ AD L + A+ Y + LHGD+ Q QR+ + FR G +
Sbjct: 237 LIDVY-NPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTID 295
Query: 396 ILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
IL+ATDVAARG+DV +V+ V L + E ++ +I R G++
Sbjct: 296 ILVATDVAARGIDVDDVECVINYELPQDE-EYYVHRIGRTGRA 337
>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
Length = 532
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/314 (41%), Positives = 199/314 (63%), Gaps = 18/314 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I++AL G + PIQK + A++G D+IG+A+TGTGKT AFGIPI+ I
Sbjct: 12 LNLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQSI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYG 221
+EK+ R+ LV++PTREL QV +E + + + VYGG PI Q+R+L +G
Sbjct: 70 -DEKN---RHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKHG 125
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V V+GTPGR++D ++R ++L + F+VLDEAD+ML +GF ED+E I++ +P RQ+M+
Sbjct: 126 VQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTML 185
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--IT 339
FSATMP I S++ KY++ P V + + ++ +I YE + L I
Sbjct: 186 FSATMPRPILSISKKYMRTPKVVAIHKEI-------VTAPTIDQYYYETRDKVDGLCRIL 238
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ K I+F +TK+ D L A+A + Y E LHGD+SQ+QR+R + FR + +IL+
Sbjct: 239 DTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILV 298
Query: 399 ATDVAARGLDVPNV 412
ATDVAARG+D+ N+
Sbjct: 299 ATDVAARGIDIDNI 312
>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
Length = 646
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 193/316 (61%), Gaps = 13/316 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L ++ I++AL G PIQ A + M+G D +G+A+TGTGKT AF +P+L+K
Sbjct: 8 FSDLALNDSILSALEGMGFVSPTPIQAASIPHLMEGVDALGKAQTGTGKTAAFSLPLLNK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRA 217
+ R P +VLAPTRELA QV K ++ L + +YGGT I QMRA
Sbjct: 68 LDLGQ------RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E P++
Sbjct: 122 LKHGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESA 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q ++FSATMPP ++++ ++L+ P+T+D+ G + D + EK + +L
Sbjct: 182 QRVLFSATMPPMLKNIVERFLREPVTIDVAGKN--HTVDKVEQQFWVVKGVEKDEAMSRL 239
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G +I
Sbjct: 240 L-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDI 298
Query: 397 LIATDVAARGLDVPNV 412
L+ATDV ARGLDVP +
Sbjct: 299 LVATDVVARGLDVPRI 314
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 199/318 (62%), Gaps = 12/318 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L++S ++ ++ R G + PIQ + +++G+D+IG+A+TGTGKT AFGIP+++K
Sbjct: 4 FSELNLSPSMLKSINRMGFEEATPIQAGTIPLSLEGKDIIGQAQTGTGKTAAFGIPLVEK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I N N L++APTRELA QV +E ++ + + VYGG I+ Q+RA+
Sbjct: 64 IDTKNT------NVQGLIIAPTRELAIQVSEELYKVGYDKRVRVLAVYGGQDINRQIRAM 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +VGTPGR++D I R L L +V +VLDEAD+ML++GF +D+E IL+ +P+ RQ
Sbjct: 118 KKGPHIIVGTPGRLLDHINRRTLKLDQVHTLVLDEADEMLNMGFIDDIESILKNVPEGRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP IR + ++ NP TV + S + I Y + EK I+ +L+
Sbjct: 178 TLLFSATMPGPIRKIAENFMTNPETVKV--KSKEMTVSLIDQYFVKAQEREKFDILARLL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ IVF +TKR D L+ A++ + Y E +HGD+SQ++R L F++GR +L
Sbjct: 236 DTQSP-ELAIVFGRTKRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVL 294
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+ V V
Sbjct: 295 VATDVAARGLDISGVTHV 312
>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 719
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 200/331 (60%), Gaps = 13/331 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S ++EG + L + +++AL G K PIQ+ + P + G D++G A+TGTGKT
Sbjct: 121 ESHEEEGTRFTDLGLDPRVLSALEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTA 180
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +P L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG
Sbjct: 181 AFALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGG 240
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
+P Q+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE
Sbjct: 241 SPYGPQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVET 300
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIAT 325
ILE P +Q +FSATMP IR + +YL +P V + K G ++ Y
Sbjct: 301 ILEGTPDAKQVALFSATMPNSIRKIAQQYLNDPTEVRV----KTKTTTGANIRQRYMQVM 356
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
++ ++ L E+ G IVF +TK++ + +A + A+ + ++GDI Q RER
Sbjct: 357 HSHKLDAMTRVLEVENYDG--IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRER 414
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
T+ A RDGR +IL+ATDVAARGLDV + LV
Sbjct: 415 TVDALRDGRIDILVATDVAARGLDVERISLV 445
>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
14684]
Length = 590
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 192/313 (61%), Gaps = 9/313 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + ++++ AL G + PIQ+ + P ++GRD++G+A TGTGKT AF +PIL +
Sbjct: 17 FADLALRRELLDALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPILQR 76
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRAL 218
+ G PL LVL PTRELA QV + H SL + +YGG PI Q+ AL
Sbjct: 77 MEPGRSAIG----PLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNAL 132
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NR 277
GVD VVGTPGRV+D I RN L L E++ VVLDEAD+ML +GFAED+E IL P R
Sbjct: 133 KRGVDVVVGTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGR 192
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+++FSATMPP I + +L +P+ +++ ++ + + + KP+ +G++
Sbjct: 193 QTVLFSATMPPRIDRIARAHLSDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRV 252
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ + IVF +T+ + D+L + + Y E LHG ++Q QR+R ++ R+G ++
Sbjct: 253 LDVESPTA-AIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADL 311
Query: 397 LIATDVAARGLDV 409
L+ATDVAARGLDV
Sbjct: 312 LVATDVAARGLDV 324
>gi|339009468|ref|ZP_08642040.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|421872706|ref|ZP_16304323.1| DEAD-box ATP-dependent RNA helicase CshA domain protein
[Brevibacillus laterosporus GI-9]
gi|338773946|gb|EGP33477.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|372458121|emb|CCF13872.1| DEAD-box ATP-dependent RNA helicase CshA domain protein
[Brevibacillus laterosporus GI-9]
Length = 529
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 199/319 (62%), Gaps = 14/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L + ++++ A+ G + PIQ A + ++G D+IG+A+TGTGKT AFGIP+ +
Sbjct: 4 FSDLALHKNVLQAIHDMGFEEPSPIQAACIPKILEGGDLIGQAQTGTGKTAAFGIPLAEV 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRAL 218
+ N + +VL PTRELA QV E + T+ +YGG ISHQ+RAL
Sbjct: 64 LNPTNNR------IQAIVLTPTRELAIQVAGELVRICKYKKIRTLPIYGGQSISHQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV V+GTPGRV+D ++R L+L V+ +VLDEAD+ML +GF ED+E IL + RQ
Sbjct: 118 RQGVHVVIGTPGRVLDHLRRKTLHLENVKMLVLDEADEMLDMGFIEDIETILSHMKAERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQL 337
+++FSATMPP I+ L ++Y+KNP TV + ++ A I +Y ++ S+ L
Sbjct: 178 TLLFSATMPPEIKRLAHRYMKNPETVAV--SREEVTAPSIEQVYYKVFERNKRESLCRIL 235
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
++ + G I+F +TKR D L+ A+ A+ Y + LHGD+SQ+QR++ + AFR+G
Sbjct: 236 DSQDVELG--IIFCRTKRGVDELSEALQARGYMADGLHGDLSQAQRDKVMKAFREGTIEF 293
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARG+DV NV V
Sbjct: 294 LIATDVAARGIDVGNVSHV 312
>gi|375102000|ref|ZP_09748263.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
gi|374662732|gb|EHR62610.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
Length = 578
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 191/314 (60%), Gaps = 9/314 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D L + +++ AL+ G + PIQ+A + + G D++G+A TGTGKT AF +P+L
Sbjct: 27 DFGALGLRPELLKALSDLGYEEPTPIQRAAIPTLLDGADVVGQAATGTGKTAAFSLPVLH 86
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRA 217
+I RG P LVL PTRELA QV + + L + VYGG P+ Q+R
Sbjct: 87 RIADLE----RGTEPSALVLVPTRELAAQVCEAMYRYGHHLGIRVVPVYGGQPMGRQLRN 142
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ GVD VV TPGR +D + R +L+LS+++ VVLDEAD+ML +GFAED++ IL+R P +R
Sbjct: 143 LETGVDVVVATPGRALDHLSRGSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDRTPADR 202
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q+M+FSATMPP I + +YL+ P ++L +S A I+ + KP+ +G+
Sbjct: 203 QTMLFSATMPPRIAGMVRRYLREPRRIELSRAESMSGDAASITQTAYIVPRGHKPAALGR 262
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ A +VF +T+ + DRL M + Y E LHG + Q+QR R + R G +
Sbjct: 263 VLDIEAPEA-AVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQNQRNRVVGRLRAGTAD 321
Query: 396 ILIATDVAARGLDV 409
+++ATDVAARGLD+
Sbjct: 322 LVVATDVAARGLDI 335
>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 689
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/318 (41%), Positives = 195/318 (61%), Gaps = 13/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 34 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 93
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L + +YGG I QM
Sbjct: 94 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQM 147
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 148 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 207
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+ Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 208 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTN--HTVDKVAQNYWVVKGVEKDEAMS 265
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 266 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 324
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDV ARGLDVP +
Sbjct: 325 DILVATDVVARGLDVPRI 342
>gi|352684524|ref|YP_004896509.1| DEAD/DEAH box helicase [Acidaminococcus intestini RyC-MR95]
gi|350279179|gb|AEQ22369.1| DEAD/DEAH helicase [Acidaminococcus intestini RyC-MR95]
Length = 537
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/314 (41%), Positives = 199/314 (63%), Gaps = 18/314 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I++AL G + PIQK + A++G D+IG+A+TGTGKT AFGIPI+ I
Sbjct: 17 LNLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQSI-- 74
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYG 221
+EK+ R+ LV++PTREL QV +E + + + VYGG PI Q+R+L +G
Sbjct: 75 -DEKN---RHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKHG 130
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V V+GTPGR++D ++R ++L + F+VLDEAD+ML +GF ED+E I++ +P RQ+M+
Sbjct: 131 VQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTML 190
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--IT 339
FSATMP I S++ KY++ P V + + ++ +I YE + L I
Sbjct: 191 FSATMPRPILSISKKYMRTPKVVAIHKEI-------VTAPTIDQYYYETRDKVDGLCRIL 243
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ K I+F +TK+ D L A+A + Y E LHGD+SQ+QR+R + FR + +IL+
Sbjct: 244 DTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILV 303
Query: 399 ATDVAARGLDVPNV 412
ATDVAARG+D+ N+
Sbjct: 304 ATDVAARGIDIDNI 317
>gi|407397666|gb|EKF27840.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi marinkellei]
Length = 634
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 201/348 (57%), Gaps = 19/348 (5%)
Query: 85 DDYVAYDDSSKDE----GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMI 140
DD + SK++ G S D+ V AL +GI+ LFP+Q E M+G +++
Sbjct: 32 DDKSGGGEGSKNDSTVTGRPFSDFDLLPTTVEALKSQGITTLFPVQALTYEAIMKGSNVL 91
Query: 141 GRARTGTGKTLAFGIPILDKI---IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
+ARTG+GKTLAFGIPI++++ +K N RGR P ++ PTRELA QV +
Sbjct: 92 VQARTGSGKTLAFGIPIVEQLARTMKSNNPPVRGRGPAAVIFCPTRELAIQVRDVIAGIS 151
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
+YGG S Q RAL GVD VV TPGR D +++ L V+ V LDEAD M
Sbjct: 152 KGFVVTALYGGVAYSTQERALYNGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHM 211
Query: 258 LSVGFAEDVEVILERLPQ---------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
L +GF +D+E++L+++ + N Q+++FSAT+P W+ + + K+ +D+VG
Sbjct: 212 LDIGFKDDIELLLQKVAEQNGSTEGNLNHQTLLFSATVPEWVHTCSF-IPKDKEFIDMVG 270
Query: 309 DSDQKLADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKS 367
+ A I Y E ++ L+ ++ + G+ +VFT TK+D L+ K
Sbjct: 271 QGTMRAAHTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKDCHDLSINNTK- 329
Query: 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+ + LHGD+ Q QRE T+ +FRD +F++LIATDVAARGLD+P VDLV
Sbjct: 330 LDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLV 377
>gi|452993077|emb|CCQ95421.1| DEAD/DEAH box helicase domain protein [Clostridium ultunense Esp]
Length = 569
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 191/321 (59%), Gaps = 13/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S++I A++ G ++ PIQ + ++G D+IG+A+TGTGKT AFGIPI+
Sbjct: 44 LKFEDIKLSEEIQKAVSDMGFEEMSPIQSQAIPKLLEGIDIIGQAQTGTGKTAAFGIPII 103
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQM 215
+K +G+ R+ +VL PTREL+ QV +E A I V YGG PI Q+
Sbjct: 104 EKC------NGKDRSLQAMVLCPTRELSIQVAEEIRRLAKYKRDIFVLPIYGGQPIDRQI 157
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL GV VVGTPGR+ID I+R L L ++ +VLDEAD+M +GF +D+E+I+ +P+
Sbjct: 158 KALKKGVQIVVGTPGRIIDHIRRKTLKLGSIRMLVLDEADEMFDMGFRDDIELIVNHMPE 217
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ++ FSATMP I +Y NP T+ +V + + Y + K I+
Sbjct: 218 ERQTIFFSATMPKEIVDFAKRYQTNPKTIKVV--HKELTVPRVEQYYFELKEHMKTEILS 275
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+LI + IVF TK+ D L + Y + LHGD+ QSQR+R +S FR G
Sbjct: 276 RLIDIY-NPKLSIVFCNTKKKVDELTIELQGRGYFVDGLHGDLKQSQRDRVMSKFRTGNI 334
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLDV +VD+V
Sbjct: 335 DILVATDVAARGLDVDDVDIV 355
>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 540
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 197/326 (60%), Gaps = 13/326 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S I DIV+ALA GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L+K
Sbjct: 35 FSDFAIHPDIVSALAAHGITTPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPLLNK 94
Query: 161 IIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHES--APSLDTICVYGGTPISHQ 214
+I + G P L +APTRELA QV + + A + + VYGG Q
Sbjct: 95 VIARGDDKWDGFVHKGKPQALAVAPTRELAVQVSADLERAGKARGIRVLTVYGGRAYEPQ 154
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GV+ VVGTPGR+IDL K+ L+LS + VVLDEAD+ML +GF DVE +L
Sbjct: 155 IDALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADEMLDLGFLPDVEKLLAMTS 214
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV----GDSDQKLADGISLYSIATSMYEK 330
RQ+M+FSATMP + +L +Y+ P + + GD+ Q + I+ + +K
Sbjct: 215 PGRQTMLFSATMPGAVVALARRYMTQPTHIRAMQEGEGDTSQTV-KAITQHVYRAHAMDK 273
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAF 389
++ +++ + + G IVF++TKR A ++A +A + + +HGD+ Q RE+ L AF
Sbjct: 274 VEMLARMLQANGR-GLTIVFSRTKRTAAKVADDLAERGFAAAAIHGDLGQGAREQALRAF 332
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
R G+ ++L+ATDVAARG+DV NV V
Sbjct: 333 RSGKVDVLVATDVAARGIDVENVTHV 358
>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
gi|374627718|ref|ZP_09700120.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
gi|167702881|gb|EDS17460.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
gi|373912957|gb|EHQ44800.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
Length = 535
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 193/314 (61%), Gaps = 10/314 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +S +++ A+ G SK IQ+ + + G D+IG+A+TGTGKTLAFG +L KI
Sbjct: 7 NELGLSNEVLKAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
K P ++L+PTRELA Q+ +E + CVYGG+ I Q+R +
Sbjct: 67 TPSQRKL-----PQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIK 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G+D +VGTPGRV+DL++RN L L++V+FVVLDEAD+ML++GF ED+E ILE++ +RQ+
Sbjct: 122 KGIDIIVGTPGRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDRQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I+ + Y+ + + S Q A + + ++ + +LI
Sbjct: 182 ILFSATMPAGIKKIAQNYMHDNFE-HVAVLSKQTTATSVKQFYYEVKQKDRFEAMCRLI- 239
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ A I+F +TKR D + M + +YN E +HGD+SQ+ R TL F+ G N LI
Sbjct: 240 DVANVQTGIIFCRTKRSVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFLI 299
Query: 399 ATDVAARGLDVPNV 412
ATDVAARG+DV NV
Sbjct: 300 ATDVAARGIDVENV 313
>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
Length = 452
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 207/342 (60%), Gaps = 6/342 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +I LA RGI++ F IQ+ L A+ G+D+IG+ARTG GKT FG+P+LD+
Sbjct: 11 FAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDR 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRAL 218
+ + P L++ PTRELA+QV + ++A L +YGG P Q++ L
Sbjct: 71 VFDDADIAPPDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLAAIYGGRPYEEQIKLL 130
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-R 277
GVD V+GTPGR++DL +R L L V VVLDEAD+ML +GF +E ILE L N
Sbjct: 131 QRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAH 190
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+M+FSATMP I +L+ +++ P+ + ++D+ + + +K ++I +
Sbjct: 191 QTMLFSATMPGAILNLSRQFMHKPVHIRAESEADEVTHETTRKVTFQAHRMDKVAVIAHI 250
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ +G + I+FT+TKR A +LA +A + ++ +HGD+ Q RE++L AFR G +I
Sbjct: 251 LQAQGRG-RSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDI 309
Query: 397 LIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
L+ATD+AARG+DV +V V + + F+ +I R G++
Sbjct: 310 LVATDIAARGIDVDDVTHVINYQVPDDPMTFIH-RIGRTGRA 350
>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain-containing protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 405
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 199/329 (60%), Gaps = 22/329 (6%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++G L++S++ + +L G SK IQ+ + M G+D++ +A+TGTGKT AFG+
Sbjct: 3 NQGKTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGV 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
PI++K+ + + + L+L PTRELA QV KE E + T+ VYGG ISH
Sbjct: 63 PIVEKV------NPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISH 116
Query: 214 QMRALDYGVDAVV-GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ L G D VV GTPGRV DL++R LNL V+ VLDEAD+ML +GF +D+E I+
Sbjct: 117 QINFLKKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSY 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGISLYSIATSMYE-K 330
LP++RQ+++FSATMP I L ++L +N T+ + D +++ I +Y
Sbjct: 177 LPEDRQNLLFSATMPKEILDLAEEFLNENYETIRVKPDE-------VTVEKIKQIIYRVN 229
Query: 331 PSIIGQLITE---HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
P + +TE + K I+FTQTK +AD LA + + +N +HGD SQ +RE L
Sbjct: 230 PRDKFKKLTEVLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVL 289
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLV 415
FR G+ IL+ATDVAARGLD+ VDLV
Sbjct: 290 HNFRTGKLKILVATDVAARGLDIKGVDLV 318
>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
Length = 665
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/318 (41%), Positives = 195/318 (61%), Gaps = 13/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L + +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+ Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTN--HTVDKVAQNYWVVKGVEKDEAMS 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDV ARGLDVP +
Sbjct: 297 DILVATDVVARGLDVPRI 314
>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
Length = 502
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/317 (41%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L +S ++ A+ R G + PIQ + A++G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELGLSSQLLLAIERSGFEEATPIQAETIPLALKGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N+K LV+APTRELA Q ++E + + VYGG I Q+R
Sbjct: 61 EKIDTKNQKL------QGLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL VVGTPGR++D + R L L ++ +VLDEAD+ML++GF ED+E I+ ++P+N
Sbjct: 115 ALKERPQIVVGTPGRLLDHLNRRTLKLEVIETLVLDEADEMLNMGFLEDIEKIISQVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+++ K++KNP V + + + AD I Y + + YEK I+ +
Sbjct: 175 RQTLLFSATMPTAIKNIGIKFMKNPDHVKI--KAKEMTADLIDQYYVRSKDYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + + Y E +HGD+SQ +R L AF++G +
Sbjct: 233 LLDVQTP-ELTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 710
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 196/325 (60%), Gaps = 7/325 (2%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
++EG+ + L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF
Sbjct: 63 EEEGIKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFA 122
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPI 211
+P L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+
Sbjct: 123 VPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAY 182
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFAEDVE I +
Sbjct: 183 GPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQ 242
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P +RQ +FSATMP IR ++ +YL NP + V A+ Y ++
Sbjct: 243 QTPSDRQVALFSATMPSQIRRMSKQYLNNPAEIS-VKSKTTTGANTRQRYLQVMGPHKLD 301
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L E G I F +TK + LA + ++ + ++GDI Q QRERT+ A +
Sbjct: 302 AMTRILEVEEFDG--VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALK 359
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
+GR +IL+ATDVAARGLDV + V
Sbjct: 360 EGRIDILVATDVAARGLDVERISHV 384
>gi|385679095|ref|ZP_10053023.1| ATP-dependent RNA helicase [Amycolatopsis sp. ATCC 39116]
Length = 538
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 219/383 (57%), Gaps = 15/383 (3%)
Query: 75 IAWQHAQSAVDD----YVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+A +H+++ V D + D + ++L + +IV ALA GI F IQ L
Sbjct: 1 MALEHSETGVPDTDTSHPLQADHVEPATPTFAELGVRPEIVRALAEAGIEHTFAIQALTL 60
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
A+ G D+IG+ARTG GKTL FG+P+L +++ + P LV+ PTREL QV
Sbjct: 61 PLALAGDDLIGQARTGMGKTLGFGVPLLQRVVSPGDG-----TPQALVVVPTRELCLQVT 115
Query: 191 KEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
++ ++ L+ T+ +YGG P Q+ AL GVD VVGTPGR++DL ++ AL L +V+
Sbjct: 116 RDLTDAGKHLNVRTLAIYGGRPYEQQISALRKGVDVVVGTPGRLLDLAEQKALVLGKVRA 175
Query: 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+VLDEAD+ML +GF D+E IL +P RQ+M+FSATMP I L +L P V
Sbjct: 176 LVLDEADEMLDLGFLPDIERILGMVPDQRQTMLFSATMPDPIIKLARTFLNRPTHVRAEE 235
Query: 309 DSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KS 367
+ + + + ++ +KP +I +++ + G ++FT+TKR A ++A +A +
Sbjct: 236 NDSSAVHERTTQFAYRAHSLDKPELIARVLQAKDR-GLTMIFTRTKRTAQKVADDLAERG 294
Query: 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQF 427
+ +HGD+ Q RE+ L AFR G+ ++L+ATDVAARG+DV +V V E +
Sbjct: 295 FAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVAARGIDVTDVTHVINYQTPEDESTY 354
Query: 428 LS--TQISRPGKSRVLSEMLDAD 448
+ + R GK+ V ++D D
Sbjct: 355 VHRIGRTGRAGKTGVAITLVDWD 377
>gi|392394099|ref|YP_006430701.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525177|gb|AFM00908.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 530
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 192/320 (60%), Gaps = 23/320 (7%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ +S+ + AL+ G + PIQKA + A+ G D+IG+A+TGTGKT AFGIPI +KI
Sbjct: 10 GEISLSKQTLQALSEMGFEEPSPIQKAAIPVAIDGVDLIGQAQTGTGKTAAFGIPICEKI 69
Query: 162 -IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 70 NPKFQAVQ-------ALILTPTRELAVQVSEEISKIGKYRHVKPLPIYGGQSIDRQIRAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNR 277
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF ED+E IL+++P + R
Sbjct: 123 RFGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPREER 182
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ- 336
Q M+FSATMPP I+ L Y+ P +V + D +++ I YE I
Sbjct: 183 QVMLFSATMPPEIKKLAQNYMSQPKSVAVSRDE-------LTVPLIEQVFYEARDKIKVD 235
Query: 337 ---LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG
Sbjct: 236 ALCRIIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDG 295
Query: 393 RFNILIATDVAARGLDVPNV 412
+ +L+ATDVAARGLD+ NV
Sbjct: 296 KVELLVATDVAARGLDIDNV 315
>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 405
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 198/329 (60%), Gaps = 22/329 (6%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++G L++S++ + +L G SK IQ+ + M G+D++ +A+TGTGKT AFG+
Sbjct: 3 NQGKTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGV 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
PI++K+ + + + L+L PTRELA QV KE E + T+ VYGG ISH
Sbjct: 63 PIVEKV------NPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISH 116
Query: 214 QMRALDYGVDAVV-GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ L G D VV GTPGRV DL++R LNL V+ VLDEAD+ML +GF +D+E I+
Sbjct: 117 QINFLKKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSY 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGISLYSIATSMYE-K 330
LP++RQ ++FSATMP I L ++L +N T+ + D +++ I +Y
Sbjct: 177 LPEDRQILLFSATMPKEILELAEEFLNENYETIKVKPDE-------VTVEKIKQIIYRVN 229
Query: 331 PSIIGQLITE---HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
P + +TE + K I+FTQTK +AD LA + + +N +HGD SQ +RE L
Sbjct: 230 PRDKFKKLTEVLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVL 289
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLV 415
FR G+ IL+ATDVAARGLD+ VDLV
Sbjct: 290 HNFRTGKLKILVATDVAARGLDIKGVDLV 318
>gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
str. F0338]
Length = 575
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 197/320 (61%), Gaps = 9/320 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+L+
Sbjct: 80 FADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLED 139
Query: 161 IIKFNEKHG----RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+I +E +P L++ PTREL+KQV + +A L T + +YGG Q
Sbjct: 140 VIAPDEPGFDDLLNPNSPQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFEPQ 199
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE +L R+P
Sbjct: 200 ISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVP 259
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSI 333
+R +M+FSATMP + +L K++++P + DQ + + + K +
Sbjct: 260 SHRHTMLFSATMPGPVVALARKFMEHPTHIRAQDPDDQHQTVNTVKQVVYRVHSLNKVEV 319
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G+ ++F +TKR A RL + A+ + LHGD+ Q RE+ L AFR+G
Sbjct: 320 LARILQSKGR-GRAVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNG 378
Query: 393 RFNILIATDVAARGLDVPNV 412
+ ++L+ATDVAARG+DV +V
Sbjct: 379 KVDVLVATDVAARGIDVDDV 398
>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
Length = 669
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 203/332 (61%), Gaps = 13/332 (3%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
+D A + S+ D + L + D+ A+++ G +K PIQ+ + M+GRD++G A+
Sbjct: 49 EDTGAEETSANDNSQGFAHLGLPDDVQEAVSKVGFTKPSPIQEETIPILMEGRDVVGLAQ 108
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---D 201
TGTGKT AF +P+L +I R P LVLAPTRELA QV F A L +
Sbjct: 109 TGTGKTAAFALPVLSQI------DTEARYPQALVLAPTRELALQVADSFQSFADHLGRIE 162
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ L G +VGTPGRVID +++ +L++S+++F+VLDEAD+ML++G
Sbjct: 163 VLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMG 222
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F EDVE ILE P+++Q +FSATMP IR L+ +YL NP V + S+++ D I+
Sbjct: 223 FQEDVERILEDTPEDKQVALFSATMPNSIRRLSKQYLNNPAEVTV--KSERRTNDNITQR 280
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQS 380
+ T K +++ E IVF +TK + +A ++ ++ YN ++GDI+Q
Sbjct: 281 FLLTPHRHKMDAFTRIL-EVIDYDAIIVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQ 339
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
QRERT+ +DGR +IL+ATDVAARGLDV +
Sbjct: 340 QRERTVDQLKDGRLDILVATDVAARGLDVDRI 371
>gi|355670672|ref|ZP_09057419.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
gi|354816109|gb|EHF00698.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
Length = 569
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 194/323 (60%), Gaps = 13/323 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFGIP
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L K+ + + ++L PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAVILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G VVGTPGRV+D ++R + + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGTQVVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMP I + K+ NP+TV ++ + ++ Y K +
Sbjct: 176 PEERQTLMFSATMPQAIADIAKKFQDNPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A IVF TKR D L A+ + Y E LHGD+ Q QR+R + +FR+G
Sbjct: 234 MCRLLDMYAP-KLSIVFCNTKRQVDDLVQALQGRGYFAEGLHGDLKQIQRDRVMDSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
R IL+ATDVAARG+DV +V+ V
Sbjct: 293 RTEILVATDVAARGIDVGDVEAV 315
>gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain-containing protein [Micromonospora
sp. L5]
gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
Length = 585
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 198/325 (60%), Gaps = 17/325 (5%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+ ++G+ + L + +++ AL+ G + PIQ+ + P + G+D++G+A TGTGKT A
Sbjct: 14 ADAEDGIAFADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAA 73
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
F +P+L ++ G +P+ LVL PTRELA QV + FH L + +YGG P
Sbjct: 74 FALPLLQRM-PVGRAEG---DPVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQP 129
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+RALD+GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E IL
Sbjct: 130 IGRQLRALDHGVDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAIL 189
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-----SLYSIAT 325
E P RQ+++FSATMP I L ++L +P+ + + + ++ +A S Y +A
Sbjct: 190 EHAPAGRQTVLFSATMPARIDGLARQHLTDPVRIRI--ERERPVAGEAPRVRQSAYIVAR 247
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
+ KP+ +G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R
Sbjct: 248 A--HKPAALGRVLDVESP-TAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDR 304
Query: 385 TLSAFRDGRFNILIATDVAARGLDV 409
+ R G ++L+ATDVAARGLDV
Sbjct: 305 VMGRLRAGTADLLVATDVAARGLDV 329
>gi|422307071|ref|ZP_16394241.1| DEAD/DEAH box helicase family protein, partial [Vibrio cholerae
CP1035(8)]
gi|408624390|gb|EKK97337.1| DEAD/DEAH box helicase family protein, partial [Vibrio cholerae
CP1035(8)]
Length = 490
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 197/322 (61%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + EK
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
Length = 454
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 212/343 (61%), Gaps = 12/343 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L ++ +I ALA GI++ F IQ+ L A+ G D+IG+ARTG GKTL FG+P++D++
Sbjct: 11 ELGVAAEICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLGFGVPLIDRVF 70
Query: 163 ---KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TIC-VYGGTPISHQMRA 217
+ E G R +++ PTREL QV ++ +A S + +C +YGG P Q+
Sbjct: 71 DDARIPEPDGTAR---AIIIVPTRELCVQVGEDLARAAHSTNLRVCTIYGGRPYEEQIEQ 127
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
LD GVD +VGTPGR+IDL +RN L LS V+ +VLDEAD+ML +GF D+E IL +P R
Sbjct: 128 LDRGVDIIVGTPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDIEKILAAVPDER 187
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q+M+FSATMP I +L ++ P+ + G+ + + + + +K S+I +
Sbjct: 188 QTMLFSATMPGPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVFQSHQMDKVSVIAR 247
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ + + G+ I+F +TKR A +A + + + +HGD+ Q RER+L+AFR+G +
Sbjct: 248 ILQANGR-GRTIIFARTKRGAASVAEQLGERGFLVTAVHGDMGQPARERSLTAFRNGDVD 306
Query: 396 ILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+L+ATDVAARG+D+ +V V + E+ ++ +I R G++
Sbjct: 307 VLVATDVAARGIDIDDVTHVINHQVPDDEMTYVH-RIGRTGRA 348
>gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
2210633]
gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
gi|433659726|ref|YP_007300585.1| Cold-shock DEAD-box protein A [Vibrio parahaemolyticus BB22OP]
gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
2210633]
gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
gi|432511113|gb|AGB11930.1| Cold-shock DEAD-box protein A [Vibrio parahaemolyticus BB22OP]
Length = 643
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 196/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|379738244|ref|YP_005331750.1| ATP-dependent RNA helicase, Cold-shock DEAD box protein A
[Blastococcus saxobsidens DD2]
gi|378786051|emb|CCG05724.1| ATP-dependent RNA helicase, Cold-shock DEAD box protein A
[Blastococcus saxobsidens DD2]
Length = 550
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 189/313 (60%), Gaps = 15/313 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +++ AL G + PIQ+ + P +GRD++G+A TGTGKT AF +P+L ++
Sbjct: 6 LGLRPELLNALTALGYEEPTPIQQEAIPPLAEGRDLLGQAATGTGKTAAFSLPVLQRL-- 63
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
H R P+ LVL PTRELA QV + H L + VYGG PI Q+R+L+ G
Sbjct: 64 --PAHRTDRPPVALVLVPTRELAVQVSEALHRYGRELGARVLPVYGGAPIVRQLRSLESG 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VV TPGR +DL+ R AL L E+ VVLDEAD+ML +GFAED+E IL+ P+ RQ+++
Sbjct: 122 VDVVVATPGRALDLLNRGALQLGEIATVVLDEADEMLDMGFAEDLEAILDETPEQRQTVL 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG----ISLYSIATSMYEKPSIIGQL 337
FSATMP + +L ++L++P+ + L +K A G + + KP+ +G++
Sbjct: 182 FSATMPRRLDALARRHLRDPVRIAL---GREKAAPGEAPRVRQTAYVVPRGAKPAALGRI 238
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ A IVF +T+ + D L + + Y E LHG +SQ QR+R + R G +
Sbjct: 239 LDVEAPTA-AIVFCRTREEVDSLTETLNGRGYRAEALHGGMSQEQRDRVMGRLRGGTAEL 297
Query: 397 LIATDVAARGLDV 409
L+ATDVAARGLD+
Sbjct: 298 LVATDVAARGLDI 310
>gi|424659059|ref|ZP_18096310.1| cold-shock DEAD box protein A [Vibrio cholerae HE-16]
gi|408053406|gb|EKG88421.1| cold-shock DEAD box protein A [Vibrio cholerae HE-16]
Length = 646
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 194/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|422910192|ref|ZP_16944833.1| cold-shock DEAD box protein A [Vibrio cholerae HE-09]
gi|341633696|gb|EGS58485.1| cold-shock DEAD box protein A [Vibrio cholerae HE-09]
Length = 646
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 194/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|384423097|ref|YP_005632456.1| cold-shock DEAD-box protein A [Vibrio cholerae LMA3984-4]
gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3984-4]
Length = 644
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 194/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|422920974|ref|ZP_16954232.1| cold-shock DEAD box protein A [Vibrio cholerae BJG-01]
gi|341649769|gb|EGS73719.1| cold-shock DEAD box protein A [Vibrio cholerae BJG-01]
Length = 643
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|417322261|ref|ZP_12108795.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
Length = 643
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 196/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
Length = 576
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 197/322 (61%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + EK
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGV-EKD 253
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 254 EAMARLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 313 QGVIDILVATDVVARGLDVPRI 334
>gi|355562543|gb|EHH19137.1| hypothetical protein EGK_19783 [Macaca mulatta]
Length = 690
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/342 (39%), Positives = 197/342 (57%), Gaps = 32/342 (9%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLE--------PAMQGRDMIGRARTGTGKTLAF 153
S DI Q+I + + G FPI + ++ G+D+I +ARTGTGKT +F
Sbjct: 193 SNGDIDQEI-SVEQKEGAFSNFPISEETIKLLKAKTFHHVYSGKDLIAQARTGTGKTFSF 251
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
IP+++K+ + RGR P LVLAPTRELA QV K+F + L C YGGTP
Sbjct: 252 AIPLIEKLHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGG 311
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE------ 267
Q + G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE
Sbjct: 312 QFERMRNGIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVA 371
Query: 268 ------------VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKL 314
+IL+ +P++ FS T W+ ++ KY+K+ VDL+G QK
Sbjct: 372 YKKVMGFTMLSRLILKTIPKH---CFFSETCLHWVFNVAKKYMKSTYEQVDLIGKKTQKT 428
Query: 315 ADGISLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPL 373
A + +I ++ ++IG +I ++ G+ I+F +TK++A L+ A + + L
Sbjct: 429 AITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSL 488
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
HGDI Q QRE TL FR+G F +L+AT+VAARGLD+P VDLV
Sbjct: 489 HGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLV 530
>gi|390944989|ref|YP_006408750.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418417|gb|AFL85995.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 591
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 202/328 (61%), Gaps = 21/328 (6%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++ L S L IS +I+ A+ G ++ IQ + + GRD+IG+A+TGTGKT +FGI
Sbjct: 2 EQELTFSDLGISSEILKAVEDMGYTQPSTIQSQSIPLLLDGRDVIGQAQTGTGKTASFGI 61
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPIS 212
PI+D++ K P L+L PTRELA QVE E + + + C+YGG I
Sbjct: 62 PIIDQVDPTINK------PQALILCPTRELAVQVEGEIVKLSKYKRGISSTCIYGGESID 115
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+++L GV VVGTPGR++D ++R LNLS++ +VLDEAD+ML +GF +D+E IL
Sbjct: 116 RQIKSLKRGVQIVVGTPGRIMDHMQRRTLNLSQISIIVLDEADEMLDMGFRDDIETILSS 175
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KP 331
+P+ RQ++ FSATMP I LT KY NP V + L +++ +I+ + YE +P
Sbjct: 176 MPEERQTVFFSATMPKPILDLTRKYQNNPEIVKV-------LRKELTVENISQAYYEVRP 228
Query: 332 SIIGQLIT---EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
S+ +L+ E + +VF TKR D + ++ +K E LHGD+SQ+QR + ++
Sbjct: 229 SLRIELMVRLMELNQFKLSVVFCNTKRSTDEVTESLISKGIMAEALHGDLSQAQRTKVMN 288
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
FR G ++L+ATDVAARG+DV +V+ V
Sbjct: 289 KFRKGTCSVLVATDVAARGIDVDDVEAV 316
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 195/318 (61%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S ++ AL G + PIQ + ++G D+IG+A+TGTGKT AFGIPI+
Sbjct: 6 LSFKAMGLSSSVIKALEEMGFEEPSPIQAKTIPIILEGHDLIGQAQTGTGKTAAFGIPIV 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
+++ R + LVLAPTRELA QV +E + + + +YGG Q+R
Sbjct: 66 ERL------DHRSKRVEALVLAPTRELAIQVAEEITKIGKFSGIKVVPIYGGQSYDRQIR 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL++G V+GTPGRV+D I+R L L VQ +VLDEAD+ML +GF ED+E IL+ +P+N
Sbjct: 120 ALEHGAQVVIGTPGRVMDHIRRGTLKLDHVQMMVLDEADEMLDMGFIEDIEFILKNVPEN 179
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA-DGISLYSIATSMYEKPSIIG 335
RQ+++FSAT+P I L +YLK+P+ V++ S ++L I +EK +
Sbjct: 180 RQTLLFSATVPDPIAKLARRYLKDPVHVNI---SPERLTVPSIEQVFYEVREFEKLDALT 236
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+++ + + + I+F +TK+ D L + A+ Y E LHGD++Q QR R + F++G
Sbjct: 237 RIL-DMEEAERTIIFCRTKKRVDELTEGLQARGYTAEALHGDLNQVQRNRVMKRFKEGGS 295
Query: 395 NILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ NV
Sbjct: 296 EILVATDVAARGLDIDNV 313
>gi|451970445|ref|ZP_21923671.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus E0666]
gi|451933531|gb|EMD81199.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus E0666]
Length = 640
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 193/322 (59%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+KI N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKI-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++ + ++L+ P+ VD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLREPVMVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|424043805|ref|ZP_17781428.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-03]
gi|408888334|gb|EKM26795.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-03]
Length = 644
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L+ P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLREPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
49726]
gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
49726]
Length = 446
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 195/316 (61%), Gaps = 5/316 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +I LA RGI++ F IQ+ L A+ G+D+IG+ARTG GKT FG+P+LD+
Sbjct: 11 FAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDR 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRAL 218
+ + P L++ PTRELA+QV + ++A L +YGG P Q++ L
Sbjct: 71 VFDDADIAPLDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLASIYGGRPYEEQIKLL 130
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-R 277
GVD V+GTPGR++DL +R L L V VVLDEAD+ML +GF +E ILE L N
Sbjct: 131 QRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAH 190
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+M+FSATMP I +L+ +++ P+ + ++D+ + + +K +I +
Sbjct: 191 QTMLFSATMPGAILNLSRQFMNKPVHIRAESEADEVTHETTRKVTFQAHRMDKVPVIAHI 250
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ + G+ I+FT+TKR A +LA +A + ++ +HGD+ Q RE++L AFR G +I
Sbjct: 251 LQAQGR-GRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDI 309
Query: 397 LIATDVAARGLDVPNV 412
L+ATD+AARG+DV +V
Sbjct: 310 LVATDIAARGIDVDDV 325
>gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
ATCC 27029]
Length = 585
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 198/325 (60%), Gaps = 17/325 (5%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+ ++G+ + L + +++ AL+ G + PIQ+ + P + G+D++G+A TGTGKT A
Sbjct: 14 ADAEDGIAFADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAA 73
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
F +P+L ++ G +P+ LVL PTRELA QV + FH L + +YGG P
Sbjct: 74 FALPLLQRM-PVGRADG---DPVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQP 129
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+RALD+GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E IL
Sbjct: 130 IGRQLRALDHGVDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAIL 189
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-----SLYSIAT 325
E P RQ+++FSATMP I L ++L +P+ + + + ++ +A S Y +A
Sbjct: 190 EHAPAGRQTVLFSATMPARIDGLARQHLTDPVRIRI--ERERPVAGEAPRVRQSAYIVAR 247
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
+ KP+ +G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R
Sbjct: 248 A--HKPAALGRVLDVESP-TAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDR 304
Query: 385 TLSAFRDGRFNILIATDVAARGLDV 409
+ R G ++L+ATDVAARGLDV
Sbjct: 305 VMGRLRAGTADLLVATDVAARGLDV 329
>gi|444426564|ref|ZP_21221977.1| Cold-shock DEAD-box protein A [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444240216|gb|ELU51762.1| Cold-shock DEAD-box protein A [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 639
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 196/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ G+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-----DLGQ-RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|388598566|ref|ZP_10156962.1| ATP-dependent RNA helicase DeaD [Vibrio campbellii DS40M4]
Length = 641
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 196/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ G+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-----DLGQ-RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
Length = 555
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 196/322 (60%), Gaps = 8/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + QDIV ALA GI+ FPIQ L A+ G+D+IG+A+TGTGKTL FGIP L +
Sbjct: 34 FADFGVRQDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQAKTGTGKTLGFGIPALQR 93
Query: 161 IIKFN----EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+ + E+ + P L++ PTRELA QV + +A + + +YGG P Q
Sbjct: 94 AVGRDDAGWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVATIYGGRPYESQ 153
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L+ GV+ VVGTPGR+IDL +++ L+LS V+ VVLDEAD+ML +GF DVE +L +P
Sbjct: 154 IAELEKGVEVVVGTPGRLIDLNRQHFLDLSHVRMVVLDEADEMLDLGFLPDVEKLLATVP 213
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP + ++ +Y+ P+ + + I +K ++
Sbjct: 214 AVRQTMLFSATMPGPVVAMARRYMTRPMHIRAAAPDEGTTKKDIRQVIYRAHHLDKDEVV 273
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+++ + G+ I+FT+TKR A +LA + + + PLHGD+ Q RE+ L AFR+ +
Sbjct: 274 ARILQAEGR-GRSIIFTRTKRAAAKLADELIHRGFAAAPLHGDLGQGAREQALRAFRNSK 332
Query: 394 FNILIATDVAARGLDVPNVDLV 415
++L+ATDVAARG+DV +V V
Sbjct: 333 VDVLVATDVAARGIDVEDVTHV 354
>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
Length = 641
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 196/321 (61%), Gaps = 13/321 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + M+G D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPIS 212
P+L+K+ + ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 63 PLLNKL-ELSQ-----RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++++ ++L++P+T+D+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKNIVERFLRDPITIDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 294 GVIDILVATDVVARGLDVPRI 314
>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
Length = 644
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L+ P+TVD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLREPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|383808644|ref|ZP_09964182.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
gi|383448538|gb|EID51497.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
Length = 699
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 198/328 (60%), Gaps = 13/328 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
++ G+ + L + +++AL G K PIQ+ + + G+D++G A+TGTGKT AF
Sbjct: 94 EENGIKFTDLGLDPRVLSALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFA 153
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPI 211
+P L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG+P
Sbjct: 154 LPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPY 213
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ L G VVGTPGRVID + + +L+LS +Q++VLDEAD+ML +GFAEDVE ILE
Sbjct: 214 GPQLAGLRRGAQVVVGTPGRVIDHLNKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILE 273
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMY 328
P +Q +FSATMP IR + +YL +P V + K G ++ Y T +
Sbjct: 274 GTPDAKQVALFSATMPSSIRKIAQQYLNDPTEVRV----KTKTTTGANIRQRYMQVTHSH 329
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
+ ++ L E+ G IVF +TK++ + +A + A+ + ++GDI Q RERT+
Sbjct: 330 KLDAMTRVLEVENYDG--IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVD 387
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
A RDGR +IL+ATDVAARGLDV + LV
Sbjct: 388 ALRDGRIDILVATDVAARGLDVERISLV 415
>gi|365540016|ref|ZP_09365191.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 674
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 197/322 (61%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S+L +++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSELALNESILSALNEMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K + L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQKIQGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E VLDEAD+ML +GF +DV I+E
Sbjct: 116 VDQMRALKNGAHIVVGTPGRVKDLITRDRLHLDECHTFVLDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P Q ++FSATMPP ++++ ++YL++P VD+ G S+Q +A Y + + +
Sbjct: 176 QAPGTAQRVLFSATMPPMVKTIVDRYLRDPARVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFR 390
++ L+ E + IVF +T++D +RLA +++ + LHGDI QS RERT+ +
Sbjct: 235 AMA--LLLETEETDASIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|420143621|ref|ZP_14651118.1| ATP-dependent RNA helicase [Lactococcus garvieae IPLA 31405]
gi|391856492|gb|EIT67032.1| ATP-dependent RNA helicase [Lactococcus garvieae IPLA 31405]
Length = 539
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S+ IV L G + PIQ+ ++ A+ GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFNELGLSEGIVETLTAIGYEQPTPIQEQTIQLALSGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E S L V+GG+ I Q++
Sbjct: 61 EKINPEN------KAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DL+KR AL+LS ++ ++LDEAD+ML++GF ED+E I+ + P
Sbjct: 115 ALRSGAHIVVGTPGRMVDLLKRKALDLSHLETLILDEADEMLNMGFLEDIEFIIGKTPAE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++KNP + + + + AD I Y I T +EK ++ +
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKVA--AKEMTADRIDQYFIKTKEFEKFDVLTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D + + + Y E +HGD+ Q++R R L F+ G +
Sbjct: 233 LL-DVERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHGDLDQNKRLRVLRDFKGGHLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
Length = 653
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 12 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 71
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 72 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 125
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 126 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 185
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + +
Sbjct: 186 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 244
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 245 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 302
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 303 QGVIDILVATDVVARGLDVPRI 324
>gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
Length = 651
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 12 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 71
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 72 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 125
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 126 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 185
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + +
Sbjct: 186 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 244
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 245 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 302
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 303 QGVIDILVATDVVARGLDVPRI 324
>gi|154332025|ref|XP_001561829.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 689
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 192/326 (58%), Gaps = 13/326 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ +++ +V AL RGI +FP+Q M+ D++ +ARTG+GKTLAFGIPI+++
Sbjct: 88 FSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNADVLVQARTGSGKTLAFGIPIVER 147
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++K RGR P ++ PTRELA QV+ + L +YGG ++Q R L
Sbjct: 148 LLKLQSHLTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLIVTALYGGVAYANQERVLRS 207
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN---- 276
GVD VV TPGR D +++ L+ V LDEAD ML +GF +D+E++L ++ +
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGST 267
Query: 277 ------RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
Q+++FSAT+P W+ + + K+ +D+VG + A I Y + E
Sbjct: 268 SAEKTVHQTLLFSATVPEWVHTCSF-IAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
S++ LI ++ G+ +VFT TK+D L+ K + + LHGD+ Q QRE T+ +F
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSF 385
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
RD +F++LIATDVAARGLD+P VDLV
Sbjct: 386 RDNKFSVLIATDVAARGLDLPMVDLV 411
>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
Length = 747
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 199/334 (59%), Gaps = 7/334 (2%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + + ++ EG+ + L I ++AAL G K PIQ A + ++GRD++G A+T
Sbjct: 77 DPTSGEADTEAEGIRFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQT 136
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---T 202
GTGKT AF +P L ++ + ++ +G R LVLAPTRELA QV + F A +D
Sbjct: 137 GTGKTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTV 196
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+ VYGG+ Q+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GF
Sbjct: 197 LPVYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGF 256
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322
AEDVE I ++ P +RQ +FSATMP IR ++ +YL NP + V A+ Y
Sbjct: 257 AEDVEQIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEIS-VKSKTTTGANTRQRYL 315
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQ 381
++ ++ L E G I F +TK + LA + ++ + ++GDI Q Q
Sbjct: 316 QVMGPHKLDALTRILEVEEFDG--VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQ 373
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
RERT+ A ++GR +IL+ATDVAARGLDV + V
Sbjct: 374 RERTVDALKEGRIDILVATDVAARGLDVERISHV 407
>gi|385832194|ref|YP_005869969.1| ATP-dependent RNA helicase [Lactococcus garvieae Lg2]
gi|343181347|dbj|BAK59685.1| ATP-dependent RNA helicase [Lactococcus garvieae Lg2]
Length = 534
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S+ IV L G + PIQ+ ++ A+ GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFNELGLSEGIVETLTAIGYEQPTPIQEQTIQLALSGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E S L V+GG+ I Q++
Sbjct: 61 EKINPEN------KAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DL+KR AL+LS ++ ++LDEAD+ML++GF ED+E I+ + P
Sbjct: 115 ALRSGAHIVVGTPGRMVDLLKRKALDLSHLETLILDEADEMLNMGFLEDIEFIIGKTPAE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++KNP + + + + AD I Y I T +EK ++ +
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKVA--AKEMTADRIDQYFIKTKEFEKFDVLTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D + + + Y E +HGD+ Q++R R L F+ G +
Sbjct: 233 LL-DVERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHGDLDQNKRLRVLRDFKGGHLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|417819858|ref|ZP_12466473.1| cold-shock DEAD box protein A [Vibrio cholerae HE39]
gi|423941342|ref|ZP_17732907.1| dbpA RNA binding domain protein [Vibrio cholerae HE-40]
gi|423973094|ref|ZP_17736452.1| dbpA RNA binding domain protein [Vibrio cholerae HE-46]
gi|340040716|gb|EGR01688.1| cold-shock DEAD box protein A [Vibrio cholerae HE39]
gi|408662755|gb|EKL33661.1| dbpA RNA binding domain protein [Vibrio cholerae HE-40]
gi|408666696|gb|EKL37474.1| dbpA RNA binding domain protein [Vibrio cholerae HE-46]
Length = 643
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
Length = 403
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 209/346 (60%), Gaps = 13/346 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L + IS++ + ++ + G K +Q+ + ++G+D+I +A+TGTGKT AFGIP
Sbjct: 9 ENLSFNDFQISKETLNSIRKMGFKKPTEVQEKTIPLILEGKDIIAQAQTGTGKTAAFGIP 68
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I++ + + + R LVL PTRELA QV KE + + + VYGG I HQ
Sbjct: 69 IVETV------NTKSRKIQALVLVPTRELAIQVTKEIKDIGREKRIFALAVYGGKSIRHQ 122
Query: 215 MRALDYGVDAV-VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
+ L G D V VGTPGR+ DLI+R LNL++V+ VLDEAD+ML +GF ED+E I E+
Sbjct: 123 IDFLKKGKDVVIVGTPGRIKDLIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEFIFEQT 182
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +Q+++FSATMP I L ++L + + + ++ D I + ++
Sbjct: 183 PPVKQTLLFSATMPKAIMRLAERFLNDDYEIVKI-KPEEVTVDRIKQKAYRVDTGKEFET 241
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ E+ +G K IVFT+TKR AD L+ + + +N + +HGD SQ++RER L FR
Sbjct: 242 LTKILNEN-EGKKSIVFTETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRN 300
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
R +IL+ATDVAARGLD+ VD+V L R +V+ +I R G++
Sbjct: 301 RIDILVATDVAARGLDIKGVDVVYNYSLPR-DVESYIHRIGRTGRA 345
>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
Length = 601
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 196/319 (61%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ S+ ++ LA +G + PIQKA + M GRD++G+A+TGTGKT AF +P+L++
Sbjct: 50 FSEFGFSEALLKTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLER 109
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ G P LVLAPTRELA QV + F + P L+ + +YGG+ Q+ A
Sbjct: 110 L------QGDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINA 163
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGRV+D +++ LN S ++ +VLDEAD+ML +GF +DVE ILE+LPQ R
Sbjct: 164 LRRGVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQER 223
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q ++FSATMP IR L+ +YL+ P + + + K A I I K + ++
Sbjct: 224 QVVLFSATMPNEIRRLSKRYLREPAEITI--KTKDKEARRIRHRCITMQNSHKLEALNRV 281
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E G I+F +TK +A ++ A ++ L+GD+ Q+QRERT+ R G NI
Sbjct: 282 L-EAVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNI 340
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLDV + LV
Sbjct: 341 LVATDVAARGLDVDRIGLV 359
>gi|375096567|ref|ZP_09742832.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374657300|gb|EHR52133.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 568
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 193/313 (61%), Gaps = 9/313 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + +++ AL+ G + PIQ A + +QGRD++G+A TGTGKT AF +P+L +
Sbjct: 18 FAELGLRPELLRALSELGYEEPTPIQLAAIPTVLQGRDLVGQAATGTGKTAAFALPVLQR 77
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRAL 218
+ RG+ P LVL PTRELA QV + + L + +YGG P+ Q+RAL
Sbjct: 78 LPDGE----RGKAPSALVLVPTRELAAQVCEAMYRYGHHLGARVVPIYGGQPMGRQLRAL 133
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VV TPGR +D + R L+L+E++ VVLDEAD+ML +GFAED+E IL+ P+ RQ
Sbjct: 134 GQGVDVVVATPGRALDHLGRGTLSLAELRTVVLDEADEMLDMGFAEDIEAILQESPEQRQ 193
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK-LADGISLYSIATSMYEKPSIIGQL 337
+M+FSAT+PP I + ++L+ P ++L +S + A I + KP+ +G++
Sbjct: 194 TMLFSATIPPRIAGMVRRHLREPARIELGRESSTRGEASLIRQSAYVVPRGHKPAALGRV 253
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ A +VF +T+ + DRL + + Y E LHG + Q QR+R ++ R G ++
Sbjct: 254 LDVEAPTA-AVVFCRTREEVDRLTETLNGRGYRAEALHGGMDQPQRDRVVARLRGGTADL 312
Query: 397 LIATDVAARGLDV 409
++ATDVAARGLD+
Sbjct: 313 VVATDVAARGLDI 325
>gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
Length = 644
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 193/322 (59%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+KI N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKI-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++ + ++L+ P+ VD+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLREPVMVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|347520831|ref|YP_004778402.1| ATP-dependent RNA helicase [Lactococcus garvieae ATCC 49156]
gi|343179399|dbj|BAK57738.1| ATP-dependent RNA helicase [Lactococcus garvieae ATCC 49156]
Length = 539
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S+ IV L G + PIQ+ ++ A+ GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFNELGLSEGIVETLTAIGYEQPTPIQEQTIQLALSGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E S L V+GG+ I Q++
Sbjct: 61 EKINPEN------KAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DL+KR AL+LS ++ ++LDEAD+ML++GF ED+E I+ + P
Sbjct: 115 ALRSGAHIVVGTPGRMVDLLKRKALDLSHLETLILDEADEMLNMGFLEDIEFIIGKTPAE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++KNP + + + + AD I Y I T +EK ++ +
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKVA--AKEMTADRIDQYFIKTKEFEKFDVLTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D + + + Y E +HGD+ Q++R R L F+ G +
Sbjct: 233 LL-DVERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHGDLDQNKRLRVLRDFKGGHLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|336126222|ref|YP_004578178.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335343939|gb|AEH35221.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 672
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S+L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSELALNDSILSALNEMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV K + L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQKIQGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E VLDEAD+ML +GF +DV I+E
Sbjct: 116 VDQMRALKNGAHIVVGTPGRVKDLITRDRLHLDECHTFVLDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P Q ++FSATMPP ++++ ++YL++P VD+ G S+Q +A Y + + +
Sbjct: 176 QAPGTAQRVLFSATMPPMVKTIVDRYLRDPARVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAH-AMAKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA +++ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
Length = 531
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 201/331 (60%), Gaps = 23/331 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ +S IV AL +GI+ FPIQ L A++G D+IG+A+TGTGKTL FGIP+L+
Sbjct: 38 FADFGVSTPIVDALKDKGITHPFPIQALTLPVALRGNDIIGQAKTGTGKTLGFGIPMLEN 97
Query: 161 IIKFNEK-------HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPI 211
+E+ RG+ P LV+ PTRELAKQV +E +A + VYGG
Sbjct: 98 TAGIDEEGWESVPVQARGK-PQGLVILPTRELAKQVAEELRAAAARRRLRIVEVYGGRAY 156
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q AL G + VVGTPGR++DL+K L+L+ V+ VVLDEAD+ML +GF EDVE IL
Sbjct: 157 EPQQEALKEGAEIVVGTPGRLVDLMKHRFLDLTYVRTVVLDEADEMLDLGFLEDVEKILA 216
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY--- 328
P NR +M+FSATMP + ++ +Y+ P + SD G+++ S+ +Y
Sbjct: 217 STPSNRHTMLFSATMPGPVVAMARRYMSRPTHIRAADPSDT----GVTVKSVRQVVYRCH 272
Query: 329 --EKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRER 384
K ++ +++ AKG G IVFT+TKR A RLA + + + LHGD+ Q RE+
Sbjct: 273 ALNKSEVLARIL--QAKGRGLTIVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQ 330
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
L AFR+G+ ++L+ATDVAARG+DV +V V
Sbjct: 331 ALRAFRNGKVDVLVATDVAARGIDVDDVTHV 361
>gi|424030057|ref|ZP_17769555.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-01]
gi|408883063|gb|EKM21857.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-01]
Length = 643
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 196/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P++ Q ++FSATMPP ++++ ++L++P+T+D+ G + D + EK
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTIDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
gi|417823279|ref|ZP_12469877.1| cold-shock DEAD box protein A [Vibrio cholerae HE48]
gi|419828553|ref|ZP_14352044.1| dbpA RNA binding domain protein [Vibrio cholerae HC-1A2]
gi|419833476|ref|ZP_14356937.1| dbpA RNA binding domain protein [Vibrio cholerae HC-61A2]
gi|419836530|ref|ZP_14359970.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46B1]
gi|421343387|ref|ZP_15793791.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43B1]
gi|421349335|ref|ZP_15799704.1| cold-shock DEAD box protein A [Vibrio cholerae HE-25]
gi|421355787|ref|ZP_15806118.1| cold-shock DEAD box protein A [Vibrio cholerae HE-45]
gi|422920214|ref|ZP_16953544.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02A1]
gi|423734953|ref|ZP_17708164.1| dbpA RNA binding domain protein [Vibrio cholerae HC-41B1]
gi|423810534|ref|ZP_17714585.1| dbpA RNA binding domain protein [Vibrio cholerae HC-55C2]
gi|423844428|ref|ZP_17718319.1| dbpA RNA binding domain protein [Vibrio cholerae HC-59A1]
gi|423875352|ref|ZP_17721990.1| dbpA RNA binding domain protein [Vibrio cholerae HC-60A1]
gi|423999832|ref|ZP_17742995.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02C1]
gi|424009340|ref|ZP_17752280.1| cold-shock DEAD box protein A [Vibrio cholerae HC-44C1]
gi|424011664|ref|ZP_17754509.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55B2]
gi|424021492|ref|ZP_17761245.1| cold-shock DEAD box protein A [Vibrio cholerae HC-59B1]
gi|424589187|ref|ZP_18028652.1| cold-shock DEAD box protein A [Vibrio cholerae CP1037(10)]
gi|424626901|ref|ZP_18065322.1| cold-shock DEAD box protein A [Vibrio cholerae HC-50A1]
gi|424627793|ref|ZP_18066126.1| cold-shock DEAD box protein A [Vibrio cholerae HC-51A1]
gi|424631593|ref|ZP_18069786.1| cold-shock DEAD box protein A [Vibrio cholerae HC-52A1]
gi|424638508|ref|ZP_18076475.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55A1]
gi|424642312|ref|ZP_18080154.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A1]
gi|424646919|ref|ZP_18084618.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A1]
gi|429885422|ref|ZP_19367011.1| Cold-shock DEAD-box protein A [Vibrio cholerae PS15]
gi|443525638|ref|ZP_21091795.1| cold-shock DEAD box protein A [Vibrio cholerae HC-78A1]
gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
gi|340049409|gb|EGR10325.1| cold-shock DEAD box protein A [Vibrio cholerae HE48]
gi|341631628|gb|EGS56512.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02A1]
gi|395941954|gb|EJH52631.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43B1]
gi|395950457|gb|EJH61076.1| cold-shock DEAD box protein A [Vibrio cholerae HE-45]
gi|395955952|gb|EJH66546.1| cold-shock DEAD box protein A [Vibrio cholerae HE-25]
gi|408007902|gb|EKG45938.1| cold-shock DEAD box protein A [Vibrio cholerae HC-50A1]
gi|408018750|gb|EKG56181.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55A1]
gi|408019565|gb|EKG56962.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A1]
gi|408026495|gb|EKG63501.1| cold-shock DEAD box protein A [Vibrio cholerae HC-52A1]
gi|408038183|gb|EKG74537.1| cold-shock DEAD box protein A [Vibrio cholerae CP1037(10)]
gi|408039214|gb|EKG75506.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A1]
gi|408060259|gb|EKG94961.1| cold-shock DEAD box protein A [Vibrio cholerae HC-51A1]
gi|408623626|gb|EKK96580.1| dbpA RNA binding domain protein [Vibrio cholerae HC-1A2]
gi|408630406|gb|EKL03003.1| dbpA RNA binding domain protein [Vibrio cholerae HC-41B1]
gi|408637667|gb|EKL09695.1| dbpA RNA binding domain protein [Vibrio cholerae HC-55C2]
gi|408645684|gb|EKL17323.1| dbpA RNA binding domain protein [Vibrio cholerae HC-60A1]
gi|408646732|gb|EKL18314.1| dbpA RNA binding domain protein [Vibrio cholerae HC-59A1]
gi|408650800|gb|EKL22075.1| dbpA RNA binding domain protein [Vibrio cholerae HC-61A2]
gi|408843932|gb|EKL84071.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02C1]
gi|408857080|gb|EKL96768.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46B1]
gi|408862444|gb|EKM01960.1| cold-shock DEAD box protein A [Vibrio cholerae HC-59B1]
gi|408864364|gb|EKM03807.1| cold-shock DEAD box protein A [Vibrio cholerae HC-44C1]
gi|408867368|gb|EKM06729.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55B2]
gi|429227775|gb|EKY33757.1| Cold-shock DEAD-box protein A [Vibrio cholerae PS15]
gi|443455970|gb|ELT19680.1| cold-shock DEAD box protein A [Vibrio cholerae HC-78A1]
Length = 643
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + +
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 234
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|429757621|ref|ZP_19290153.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
gi|429174759|gb|EKY16228.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
Length = 564
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 206/368 (55%), Gaps = 18/368 (4%)
Query: 53 SRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVA 112
S +SAG +I P + S + Y E + +S IV
Sbjct: 25 SDYSAGVVRLGSIKAPSTQEDETTPDITNSGNETY---------EAKSFADFGVSDPIVD 75
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG- 171
AL RGI+ FPIQ L A+ D+IG+A+TGTGKTL FGIP+L+ +I +E+
Sbjct: 76 ALEERGITHPFPIQALTLPVALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGYEDL 135
Query: 172 ---RNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVV 226
P L++ PTREL KQV + +A L T + +YGG Q+ AL G D VV
Sbjct: 136 LNPNMPQALIILPTRELTKQVADDLRAAASKLSTRIVDIYGGVAFEPQIEALKRGADIVV 195
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR+IDL+++ L+L+ V+ VVLDEAD+ML +GF DVE +L R+P +R M+FSATM
Sbjct: 196 GTPGRLIDLLRQGVLHLNGVENVVLDEADEMLDLGFLPDVETLLSRIPADRHMMLFSATM 255
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMYEKPSIIGQLITEHAKGG 345
P + +L K++ P + DQ + + + T K ++ +++ + G
Sbjct: 256 PGPVITLARKFMTQPTHIRAQDPDDQGQTVNTVQQVIYRTHAMNKTEVVARILQARGR-G 314
Query: 346 KCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
+ ++F +TKR A R+A + + + LHGD+ Q RE+ L AFR+G+ ++L+ATDVAA
Sbjct: 315 RAVIFCRTKRAAARVADELTERGFAVAALHGDLGQGAREQALRAFRNGKVDVLVATDVAA 374
Query: 405 RGLDVPNV 412
RG+DV +V
Sbjct: 375 RGIDVDDV 382
>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase [Methanohalobium evestigatum Z-7303]
gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
Z-7303]
gi|452077305|gb|AGF93269.1| DEAD/DEAH box helicase domain-containing protein [uncultured
organism]
Length = 431
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 200/323 (61%), Gaps = 22/323 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L++S+DI A+ G + PIQ + MQGRD+IG+A+TGTGKT AFGIP L+K
Sbjct: 6 FNELNLSRDIEKAIEDLGYEEPTPIQARSIPYIMQGRDVIGQAQTGTGKTAAFGIPALEK 65
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + ++K +VL PTRELA QV E ++ A + + +YGG PI Q++AL
Sbjct: 66 VDRNSKK------VQTIVLCPTRELANQVADELNKLARYKKIKVLPIYGGQPIERQIKAL 119
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ G V+GTPGR++D ++R+ L+L V+ VLDEAD+ML +GF ED+E+IL +LP RQ
Sbjct: 120 NKGAQIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLDMGFREDIELILSKLPDKRQ 179
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSI 333
+ +FSATMP I +T KY NP +L+ +KL ++ + + +E KP
Sbjct: 180 TTLFSATMPGPIMKMTKKYQDNP---ELIKTVHKKL----TVPQVEQTYFEVKERSKPEA 232
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L T+ +VF TK+ D L + + Y + LHGD+ Q QR++ +S F++G
Sbjct: 233 LCRL-TDFYNIKSSLVFCNTKKGVDNLVETLKTRGYLADGLHGDMKQKQRDKVMSNFKNG 291
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
L+ATDVAARG+DV N+++V
Sbjct: 292 EIETLVATDVAARGIDVENIEVV 314
>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
Length = 607
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/314 (44%), Positives = 197/314 (62%), Gaps = 13/314 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
S+ ++ LA +G S+ PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 64 FSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL---- 119
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
+ G+ + P LVLAPTRELA QV + F + P L + VYGGT Q+ AL GV
Sbjct: 120 -ESGQ-KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGV 177
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGRV+D +++ L+ S ++ +VLDEAD+ML +GF +DVE IL++LP+ RQ ++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLF 237
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMPP IR L+ +YLK+P V + DQ+ I SI M K + Q + +
Sbjct: 238 SATMPPEIRRLSKRYLKDPAEV-TIRTKDQE-GKRIRQRSITVPMPHKLEAL-QRVLDAC 294
Query: 343 KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
G I+F +TK +A + A + L+GD+ Q+QRERT+ R G +IL+ATD
Sbjct: 295 GGEGVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATD 354
Query: 402 VAARGLDVPNVDLV 415
VAARGLDV + LV
Sbjct: 355 VAARGLDVERIGLV 368
>gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
gi|227120002|ref|YP_002821897.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
Length = 663
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A Y + + +
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVAKVEQQYWVVKGVEKDE 254
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 255 AMARLLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 312
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 313 QGVIDILVATDVVARGLDVPRI 334
>gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase [Salinispora tropica CNB-440]
gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
Length = 579
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 192/323 (59%), Gaps = 9/323 (2%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+ S+ DE L + +++AALA G + PIQ+ + P + GRD++G+A TGTGKT
Sbjct: 13 EPSTDDEATAFVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKT 72
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGG 208
AF +P+L ++ NP+ LVL PTRELA QV + FH L + +YGG
Sbjct: 73 AAFALPMLQRMPANRSTT----NPVALVLVPTRELAVQVSEAFHRYGKELGARVLPIYGG 128
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
PI Q+RALD GVD VV TPGR +D I R L L +V VVLDEAD+ML +GFAED+E
Sbjct: 129 QPIGRQLRALDAGVDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEA 188
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD-QKLADGISLYSIATSM 327
ILE P+ RQ+++FSATMP I + +L +P+ + + + A + + S
Sbjct: 189 ILEHAPEQRQTVLFSATMPARIDGMARAHLTDPIRILIAREKPVAGEAPRVRQSAYLVSR 248
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
KP+ +G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R +
Sbjct: 249 AHKPAALGRVLDVESPTA-AIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVM 307
Query: 387 SAFRDGRFNILIATDVAARGLDV 409
R G ++L+ATDVAARGLDV
Sbjct: 308 GRLRAGTADLLVATDVAARGLDV 330
>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
Length = 522
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ A+ R G + PIQ + A+ GRD+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKAVERSGFEEATPIQSETIPLALSGRDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + H +G LV++PTRELA Q ++E + + + VYGG I Q+R
Sbjct: 61 EKI-DTSSSHLQG-----LVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIESIISKVPST 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+S+ K+++NP V + + + AD I Y + + +EK I+ +
Sbjct: 175 RQTLLFSATMPPAIKSIGVKFMQNPEHVKI--KAKEMTADLIDQYYVRSKDFEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ I+F +TKR D LA + + Y E +HGD+SQ +R L +F++G +
Sbjct: 233 LLDVQTP-ELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 572
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 195/323 (60%), Gaps = 13/323 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFGIP
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L K+ + + ++L PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G VVGTPGRV+D ++R + + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGTQIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMP I + K+ +P+TV ++ + ++ Y K +
Sbjct: 176 PEERQTLMFSATMPQAIADIARKFQDDPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A IVF TKR D L A+ + Y E LHGD+ Q QR+R + +FR+G
Sbjct: 234 MCRLLDMYAP-KLSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
R +IL+ATDVAARG+DV +V+ V
Sbjct: 293 RTDILVATDVAARGIDVGDVEAV 315
>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
16795]
gi|164603369|gb|EDQ96834.1| DEAD/DEAH box helicase [Clostridium bartlettii DSM 16795]
Length = 541
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 205/347 (59%), Gaps = 17/347 (4%)
Query: 99 LDISKLD---ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++I+K + IS +I ++A G + PIQ + + G+D+IG+A+TGTGKT AF I
Sbjct: 1 MNITKFEDLPISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSI 60
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPIS 212
PIL+K+ N KH + +VL PTRELA QV KE + + T+ VYGG PI
Sbjct: 61 PILEKV-DPNNKHLQ-----AIVLCPTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPID 114
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q++AL GV V+GTPGRVID I R L L +V+ VVLDEAD+ML +GF ED+E+IL +
Sbjct: 115 RQIKALKSGVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQ 174
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P RQ+ FSATMP I LT Y P + +V + I + I T K
Sbjct: 175 TPIERQTTFFSATMPKEILELTKLYQHEPEIIKVV--RKELTVPNIKQFYIETRRANKLE 232
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
++ +LI + +VF TKR +D L + A+ Y + LHGD+ Q+QR+ + FR
Sbjct: 233 VLCRLIDVY-NPKLSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQ 291
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
G +IL+ATDVAARG+DV +VD+V L + E ++ +I R G++
Sbjct: 292 GTIDILVATDVAARGIDVDDVDMVFNYDLPQDE-EYYVHRIGRTGRA 337
>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase [Thermobispora bispora DSM 43833]
gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
43833]
Length = 618
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 210/339 (61%), Gaps = 9/339 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +I AL GI FPIQ+ L A+ G+D+IG+ARTGTGKT AFGIP L I K
Sbjct: 13 LGVIPEIADALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGIPTLQLIGK 72
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
+ + P L+LAPTRELA QV ++ +A L T VYGG Q+ AL G
Sbjct: 73 PRKNR---KKPRGLILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQIEALKNG 129
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VVGTPGR++DL+ + L+LS++ +VLDEAD+ML +GF D+E I++ LP+ RQ+M+
Sbjct: 130 VDVVVGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPEKRQTML 189
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
FSATMP I +L+ +YL P + + + + + + + T +K I+ +++ +
Sbjct: 190 FSATMPGEIVALSRRYLNRPTHIRAEIAEIEAETKPRTTQFVYRTHRMDKIEILARVL-Q 248
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ +VF +TKR D +A+ + + + +HGD+SQSQRE+ L AFR+G+ N+L+A
Sbjct: 249 STELTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKINVLVA 308
Query: 400 TDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
TDVAARG+DV +V V L + E ++ +I R G++
Sbjct: 309 TDVAARGIDVDDVTHVINYDLPQDEKTYIH-RIGRTGRA 346
>gi|398010006|ref|XP_003858201.1| nucleolar RNA helicase II, putative [Leishmania donovani]
gi|322496407|emb|CBZ31477.1| nucleolar RNA helicase II, putative [Leishmania donovani]
Length = 678
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 192/326 (58%), Gaps = 13/326 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ +++ +V AL RGI +FP+Q M+ D++ +ARTG+GKTLAFGIPI+++
Sbjct: 88 FSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVER 147
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++K RGR P ++ PTRELA QV+ + L +YGG ++Q R L
Sbjct: 148 LLKLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVTALYGGVAYANQERVLRS 207
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--- 277
GVD VV TPGR D +++ L+ V LDEAD ML +GF +D+E++L ++ +
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267
Query: 278 -------QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
Q+++FSAT+P W+ + + K+ +D+VG + A I Y + E
Sbjct: 268 GAERPVHQTLLFSATVPEWVHTCSF-IAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
S++ LI ++ G+ +VFT TK+D L+ K + + LHGD+ Q QRE T+ +F
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSF 385
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
RD +F++LIATDVAARGLD+P VDLV
Sbjct: 386 RDNKFSVLIATDVAARGLDLPMVDLV 411
>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 624
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 142/333 (42%), Positives = 198/333 (59%), Gaps = 15/333 (4%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V D++ + S+ ++ LA +G S PIQKA M GRD++G+A+TGT
Sbjct: 60 VTADEAKSEPQSGFDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGT 119
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTIC 204
GKT AF +P+L+++ + G+ + P LVLAPTRELA QV F A P L +
Sbjct: 120 GKTAAFALPLLERL-----ESGQ-KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLA 173
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGGT Q+ L GVD VVGTPGRV+D +++ L+ S + +VLDEAD+ML +GF +
Sbjct: 174 VYGGTDFRSQISTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFID 233
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSI 323
DVE ILE+LP+ RQ ++FSATMPP IR L+ +YL +P V + D D KL I +I
Sbjct: 234 DVEWILEQLPKERQVVLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKL---IRQRAI 290
Query: 324 ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQR 382
M K + Q + + G I+F +TK +A + A + L+GD+ Q+QR
Sbjct: 291 TVPMSHKLEAL-QRVLDACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQR 349
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
ERT+ R G ++L+ATDVAARGLDV + LV
Sbjct: 350 ERTVERLRSGSVDVLVATDVAARGLDVERIGLV 382
>gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
mulieris FB024-16]
gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
mulieris FB024-16]
Length = 523
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 217/380 (57%), Gaps = 16/380 (4%)
Query: 69 LDFKSSIAWQHAQSAVD-DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQK 127
++ ++ + + VD D +D + ++ S + +IVAALA +GI FPIQ
Sbjct: 1 MNSETDLEYPQPNQEVDADITGVNDLNANQDKTFSDFGVEPEIVAALADKGIIHPFPIQA 60
Query: 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPT 182
L A++ D+IG+A+TGTGKTL F IPIL II ++E G P LVL PT
Sbjct: 61 LTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDIIGPGDEGWDELPSPG-APQALVLLPT 119
Query: 183 RELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
RELAKQV E +A + +YGG Q+++L GV+ VVGTPGR+IDL+K
Sbjct: 120 RELAKQVAAEIRAAASHRVARILEIYGGVGFDSQIQSLKDGVEVVVGTPGRLIDLMKHGE 179
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
L L EV+ +VLDEAD+ML +GF DVEV++ P R +M+FSATMP + +L +Y+
Sbjct: 180 LQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATPPERHTMLFSATMPGPVVALARRYMYQ 239
Query: 301 PLTVDLVGDS-DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
P + S D K + ++ K ++ +++ + G I+FT+TKR R
Sbjct: 240 PTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEEVVARILQAKNR-GLTIIFTRTKRSCQR 298
Query: 360 LAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELV 418
LA + + + +HGD++QS RER L AFR G+ ++L+ATDVAARG+DV D+ ++
Sbjct: 299 LADELTNRGFAAGAIHGDLNQSARERALRAFRHGKVDVLVATDVAARGIDVD--DVTHVI 356
Query: 419 VLERKEVQFLSTQISRPGKS 438
E E + T I R G++
Sbjct: 357 NFECPEDE--KTYIHRIGRT 374
>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
Length = 529
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 195/314 (62%), Gaps = 19/314 (6%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + IV AL G + PIQ A + ++G D+IG+A+TGTGKT AFGIP++ I
Sbjct: 11 LELDKKIVTALTDMGFEEPSPIQAATIPLVLEGNDVIGQAQTGTGKTAAFGIPLVQAITD 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYG 221
F KH + L++ PTRELA QV +E + + + + VYGG PI Q+RAL
Sbjct: 71 F--KHIQ-----ALIMTPTRELAIQVAEEVGKIGRTRRVRALPVYGGQPIERQIRALRNN 123
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V V+GTPGR+ID I R + L ++F+VLDEAD+ML +GF +D+E I+ LP RQ+++
Sbjct: 124 VQIVIGTPGRLIDHINRGTIRLDHIKFLVLDEADEMLDMGFVDDIEEIMRSLPVERQTLL 183
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--IT 339
FSATMP I SLT KY+K P V + + +++ I +E I L +
Sbjct: 184 FSATMPRPILSLTKKYMKAPKNVTISKEE-------LTVPLIEQYYFETKDKIEGLCRLL 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ GK I+F +TK+ D L+ A+ ++ Y E LHGD+SQ+QR+R + FR+G ++LI
Sbjct: 237 DAEIDGKLIIFCRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLI 296
Query: 399 ATDVAARGLDVPNV 412
ATDVAARG+DV N+
Sbjct: 297 ATDVAARGIDVDNI 310
>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
Length = 569
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 195/323 (60%), Gaps = 13/323 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFG+P
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
+L K+ + + +VL PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G +VGTPGRV+D ++R + + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGTQVIVGTPGRVMDHMRRKTVKVDHVLTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMP I + K+ K+P+TV ++ + ++ Y K +
Sbjct: 176 PEERQTLMFSATMPQAIAEIARKFQKDPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A IVF TKR D L + + Y E LHGD+ Q QR+R + +FR+G
Sbjct: 234 MSRLLDMYAP-KLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
R +IL+ATDVAARG+DV +V+ V
Sbjct: 293 RTDILVATDVAARGIDVGDVEAV 315
>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
Length = 673
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/318 (41%), Positives = 194/318 (61%), Gaps = 13/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ +I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV K L + +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+ Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPARVDVAGTN--HTVDKVAQNYWVVKGVEKDEAMS 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDV ARGLDVP +
Sbjct: 297 DILVATDVVARGLDVPRI 314
>gi|110680325|ref|YP_683332.1| ATP-dependent RNA helicase [Roseobacter denitrificans OCh 114]
gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter
denitrificans OCh 114]
Length = 433
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 209/326 (64%), Gaps = 21/326 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D +++ ++VA L R G+ PIQK + AM GRD++G A+TGTGKT AFG+P++
Sbjct: 3 DFEMMNLPPELVARLGRMGLKDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62
Query: 160 KIIKFN----EKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
++++ + K RG LVLAPTRELA Q+ + F E+ + V GG I+
Sbjct: 63 QMLELDGRPAPKSVRG-----LVLAPTRELATQISVNLRSFAENT-KVKVAMVVGGQSIN 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
+Q++ L+ GVD +V TPGR++DL+ R A+ L E F+VLDEADQML +GF D+ I
Sbjct: 117 NQIKRLERGVDLLVATPGRLLDLMDRRAVRLDEAVFLVLDEADQMLDMGFIHDLRKIASV 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSIATSMYEK 330
+P+ RQ+M+FSATMP + L N YL++P+ V++ K AD ++ ++ IA S EK
Sbjct: 177 IPKERQTMLFSATMPKQMNELANSYLRSPIRVEV--SPPGKAADKVTQEVHFIAKS--EK 232
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAF 389
P ++ +++ +H + + +VF +TK +++L ++ K+ Y +HG+ SQ QR+R ++AF
Sbjct: 233 PGLLIEMLDKH-RDERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAF 291
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
+ G +L+ATDVAARGLD+P+V V
Sbjct: 292 KSGEIKVLVATDVAARGLDIPDVKHV 317
>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
Length = 641
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 195/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L+++ I++AL G PIQ A + +QG D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLELNDAILSALDGMGFVSPTPIQAAAIPHLLQGVDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLDLAQ------RKPQAIVLAPTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVIVGTPGRVQDLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P + Q ++FSATMPP ++++ ++L++P+TVD+ G + D ++ EK
Sbjct: 176 HAPSSAQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKN--HTVDKVAQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|339896857|ref|XP_001462984.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
Length = 678
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 192/326 (58%), Gaps = 13/326 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ +++ +V AL RGI +FP+Q M+ D++ +ARTG+GKTLAFGIPI+++
Sbjct: 88 FSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVER 147
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++K RGR P ++ PTRELA QV+ + L +YGG ++Q R L
Sbjct: 148 LLKLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVTALYGGVAYANQERVLRS 207
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--- 277
GVD VV TPGR D +++ L+ V LDEAD ML +GF +D+E++L ++ +
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267
Query: 278 -------QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
Q+++FSAT+P W+ + + K+ +D+VG + A I Y + E
Sbjct: 268 GAERPVHQTLLFSATVPEWVHTCSF-IAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
S++ LI ++ G+ +VFT TK+D L+ K + + LHGD+ Q QRE T+ +F
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSF 385
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
RD +F++LIATDVAARGLD+P VDLV
Sbjct: 386 RDNKFSVLIATDVAARGLDLPMVDLV 411
>gi|431794108|ref|YP_007221013.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784334|gb|AGA69617.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 531
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 191/319 (59%), Gaps = 23/319 (7%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI- 161
++++S+ ++ AL+ G + PIQK + AM G D+IG+A+TGTGKT AFGIPI +K+
Sbjct: 11 EINLSKQVLQALSEMGFEEPSPIQKEAIPVAMDGVDLIGQAQTGTGKTAAFGIPICEKVN 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 71 PKFQAVQ-------ALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALR 123
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQ 278
+G VVGTPGRV+D + R L L V+ VVLDEAD+ML +GF ED+E IL ++ P+ RQ
Sbjct: 124 FGSQVVVGTPGRVLDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILRQVPPEERQ 183
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ-- 336
M+FSATMP I+ L Y+ P +V + D +++ I YE I
Sbjct: 184 MMLFSATMPIEIKKLAQNYMHQPKSVAVSRDE-------LTVPLIEQVFYETREKIKVDA 236
Query: 337 --LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 237 LCRIIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGK 296
Query: 394 FNILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ NV
Sbjct: 297 VELLVATDVAARGLDIDNV 315
>gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
Length = 523
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 217/380 (57%), Gaps = 16/380 (4%)
Query: 69 LDFKSSIAWQHAQSAVD-DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQK 127
++ ++ + + VD D +D + ++ S + +IVAALA +GI FPIQ
Sbjct: 1 MNSETDLEYPQPNQEVDADITGVNDLNANQDKTFSDFGVEPEIVAALADKGIIHPFPIQA 60
Query: 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPT 182
L A++ D+IG+A+TGTGKTL F IPIL II ++E G P LVL PT
Sbjct: 61 LTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDIIGPGDEGWDELPSPG-APQALVLLPT 119
Query: 183 RELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
RELAKQV E +A + +YGG Q+++L GV+ VVGTPGR+IDL+K
Sbjct: 120 RELAKQVAAEIRAAASHRVARILEIYGGVGFDSQIQSLKDGVEVVVGTPGRLIDLMKHGE 179
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
L L EV+ +VLDEAD+ML +GF DVEV++ P R +M+FSATMP + +L +Y+
Sbjct: 180 LQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATPPERHTMLFSATMPGPVVALARRYMYQ 239
Query: 301 PLTVDLVGDS-DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADR 359
P + S D K + ++ K ++ +++ + G I+FT+TKR R
Sbjct: 240 PTHIRAADPSDDSKTVRQVHQFAYRVHSMNKEEVVARILQAKNR-GLTIIFTRTKRSCQR 298
Query: 360 LAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELV 418
LA + + + +HGD++QS RER L AFR G+ ++L+ATDVAARG+DV D+ ++
Sbjct: 299 LADELTNRGFAAGAIHGDLNQSARERALRAFRHGKVDVLVATDVAARGIDVD--DVTHVI 356
Query: 419 VLERKEVQFLSTQISRPGKS 438
E E + T I R G++
Sbjct: 357 NFECPEDE--KTYIHRIGRT 374
>gi|378551112|ref|ZP_09826328.1| hypothetical protein CCH26_13526 [Citricoccus sp. CH26A]
Length = 578
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 209/351 (59%), Gaps = 20/351 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ ++ D+V ALA +GI+ FPIQ L A+ G D+IG+A+TGTGKTL FG+P+L +
Sbjct: 46 FADFNVRADMVEALAEKGITHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGLPLLQR 105
Query: 161 IIKFNEKHGRGR-----NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
+I +E+ G R P LV+APTRELA QV + +A S+ +YGG
Sbjct: 106 VIGPDEE-GFDRLAAPGAPQALVVAPTRELANQVAADITAAASKRSVRIATIYGGRAYEP 164
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ L GV+ VVGTPGR+IDL+++ LNL V+ VVLDEAD+ML +GF DVE +L +
Sbjct: 165 QIEELQRGVEVVVGTPGRLIDLMRQRHLNLKLVKIVVLDEADEMLDLGFLPDVETLLSAV 224
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY----- 328
P+ RQ+M+FSATMP + ++ +Y+ P + D+ GI+ I +Y
Sbjct: 225 PEVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDE----GITKKDIRQLVYRAHHM 280
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLS 387
+K ++ + + + GK I+FT+TKR A RL+ + K + +HGD+ Q RE+ L
Sbjct: 281 DKDELVARSLQAEGR-GKTIIFTRTKRTAARLSDELEKRGFAAGSIHGDLGQGAREQALR 339
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
AFR + ++L+ATDVAARG+DV +V V E +L ++ R G++
Sbjct: 340 AFRGDKIDVLVATDVAARGIDVDDVTHVINFQCPEDEKTYLH-RVGRTGRA 389
>gi|421765661|ref|ZP_16202442.1| Cold-shock DEAD-box protein A [Lactococcus garvieae DCC43]
gi|407625746|gb|EKF52434.1| Cold-shock DEAD-box protein A [Lactococcus garvieae DCC43]
Length = 543
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S+ I+ L G + PIQ+ ++ A+ GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFNELGLSEGIIETLTAIGYEQPTPIQEQTIQLALSGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E S L V+GG+ I Q++
Sbjct: 61 EKINPEN------KAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DL+KR AL+LS ++ ++LDEAD+ML++GF ED+E I+ + P
Sbjct: 115 ALRSGAHIVVGTPGRMVDLLKRKALDLSHLETLILDEADEMLNMGFLEDIEFIIGKTPSE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++KNP + + + + AD I Y + + +EK I+ +
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYYVKSKEFEKFDILTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D + + + Y E +HGD+ Q++R R L F+ G +
Sbjct: 233 LL-DVERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHGDLDQNKRLRVLRDFKGGHLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|335029349|ref|ZP_08522856.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
gi|334268646|gb|EGL87078.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
Length = 524
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 201/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI H + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------HTEDQTIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|399036700|ref|ZP_10733664.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
gi|398065527|gb|EJL57148.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
Length = 569
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/329 (42%), Positives = 198/329 (60%), Gaps = 16/329 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEKAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
K+I E+ R L+LAPTREL Q+ K F + L V GG I+ Q
Sbjct: 63 KLIP-EERRPDNRTTRTLILAPTRELVNQIATNLKNFLRKS-HLRINVVVGGVSINKQQL 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+
Sbjct: 121 QLEKGTDILVATPGRLLDLVNRRAIGLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L +YL NP+TV++ K AD + Y +K ++
Sbjct: 181 RQTMLFSATMPKSIADLAGEYLTNPVTVEVT--PPGKAADKVEQYVHFVNGKNDKTDLLK 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 239 KSLTENPD-GRAIVFLRTKHGAEKLMKHLDHVGYSVASIHGNKSQGQRERALKAFRDGDI 297
Query: 395 NILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 298 KTLIATDVAARGIDIPAVSHVYNYDLPEV 326
>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
Length = 557
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 201/326 (61%), Gaps = 21/326 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + +I ALA +GI FPIQ L A+ GRD+IG+A+TGTGKTL FGIP+L
Sbjct: 62 FADFGVEPEISQALADKGIIHPFPIQALTLPVALDGRDVIGQAKTGTGKTLGFGIPLLMD 121
Query: 161 IIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
+ ++E G +P LV+ PTRELAKQV E ++A ++ + VYGG
Sbjct: 122 TLGPGEEGWDEDPASG-SPQALVVLPTRELAKQVATELAQAAAKRTVRIVQVYGGRAYEP 180
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL+ G + VVGTPGR+IDL++R L+L V VVLDEAD+ML +GF DVE IL R
Sbjct: 181 QIEALEKGAEVVVGTPGRLIDLMERGVLSLEHVTTVVLDEADEMLDLGFLPDVEKILART 240
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY----- 328
+RQ+M+FSATMP + +L +Y+ P + D+ + ++ S+ +Y
Sbjct: 241 RPDRQTMLFSATMPGAVVALARRYMSKPTHIRAQDPGDESM----TVTSVKQVVYRTHAL 296
Query: 329 EKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K ++ +++ A+G G+ I+FT+TKR A R+A + ++ + LHGD+ Q RE+ L
Sbjct: 297 NKVEVVSRIL--QARGRGRTIIFTRTKRTAARVAEDLGSRGFATAALHGDLGQGAREQAL 354
Query: 387 SAFRDGRFNILIATDVAARGLDVPNV 412
AFR G+ ++L+ATDVAARG+DV +V
Sbjct: 355 RAFRHGKVDVLVATDVAARGIDVDDV 380
>gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase [Salinispora arenicola CNS-205]
gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
CNS-205]
Length = 574
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/325 (42%), Positives = 198/325 (60%), Gaps = 17/325 (5%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
S+ DE L + +++AALA G + PIQ+ + P + GRD++G+A TGTGKT A
Sbjct: 10 STDDEATAFVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAA 69
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
F +P+L ++ + G +P+ LVL PTRELA QV + FH L T + +YGG P
Sbjct: 70 FALPLLQRM-SVDRPTG---DPVALVLVPTRELAVQVSEAFHRYGKELGTRVLPIYGGQP 125
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+RALD GVD VV TPGR +D I R L L +V VVLDEAD+ML +GFAED+E IL
Sbjct: 126 IGRQLRALDSGVDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAIL 185
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-----SLYSIAT 325
E P+ RQ+++FSATMP I + +L +P+ + + +Q +A S Y +A
Sbjct: 186 EHAPEQRQTVLFSATMPARIDGMARAHLTDPIRILIA--REQPVAGEAPRVRQSAYLVAR 243
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
+ KP+ +G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R
Sbjct: 244 A--HKPAALGRVLDIESP-TAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDR 300
Query: 385 TLSAFRDGRFNILIATDVAARGLDV 409
+ R G ++L+ATDVAARGLDV
Sbjct: 301 VMGRLRAGTADLLMATDVAARGLDV 325
>gi|357637041|ref|ZP_09134916.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
gi|357585495|gb|EHJ52698.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
Length = 518
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 202/320 (63%), Gaps = 12/320 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++++DI++A+ + G + PIQ+ + A++GRD+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLAEDILSAVEKAGFVEPSPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N+K LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKIDVTNDK------VQALVIAPTRELAVQSQEELFRFGRGKKIKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ +P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISHVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K+P V + + + D + Y + EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKDPEHVKIA--AKELTTDLVDQYYVRVKENEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++ +
Sbjct: 233 LI-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLD 291
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 292 ILVATDVAARGLDISGVTQV 311
>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 602
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 203/344 (59%), Gaps = 19/344 (5%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISKLDISQD--IVAALARRGISKLFPIQKAVLEPAMQGR 137
A+S A D+ + +E ++ LD+ D ++ ALA G PIQ A + P + G
Sbjct: 7 AESTTTAVTATDEQAGNENEPVTFLDLGIDERVLRALAEVGYENPSPIQAATIPPLLAGN 66
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +P+L KI G R P LVLAPTRELA QV + F + A
Sbjct: 67 DVVGLAQTGTGKTAAFAVPVLSKI------DGESRTPQALVLAPTRELALQVSEAFGKYA 120
Query: 198 ---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
P++ + +YGG Q+ L G +VGTPGRVID +++ L+LS ++F+VLDEA
Sbjct: 121 VHMPNITVLPIYGGQSYGVQLSGLRRGAQIIVGTPGRVIDHLEKGTLDLSNLEFLVLDEA 180
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML++GF EDVE IL P+ +Q +FSATMPP IR + KYL +P+ + + K
Sbjct: 181 DEMLTMGFQEDVERILADTPEFKQVALFSATMPPAIRKIAKKYLHDPVEISV----KAKT 236
Query: 315 ADG--ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCE 371
A G I+ + + K + +L+ G I+F +TK + LA + A+ +
Sbjct: 237 ATGSNITQRYLQVAHQRKLDALTRLLEVEEFDG-MIIFVRTKSATEELAEKLRARGHAAA 295
Query: 372 PLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
++GDI Q+QRERT+ +DG+ +IL+ATDVAARGLDV + V
Sbjct: 296 AINGDIVQAQRERTIGQLKDGKVDILVATDVAARGLDVERISHV 339
>gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
maris AB-18-032]
Length = 566
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/317 (41%), Positives = 194/317 (61%), Gaps = 17/317 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +++AAL+ G + PIQ+ + P + GRD++G+A TGTGKT AF +P+L +
Sbjct: 17 FADLGLRSELLAALSALGYEEPTPIQREAIGPLLAGRDLLGQAATGTGKTAAFALPLLQR 76
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRAL 218
+ ++ G +P+ LVL PTRELA QV + FH L + +YGG PI Q+RAL
Sbjct: 77 M---PDERPTG-DPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRAL 132
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
D GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E ILE P+ RQ
Sbjct: 133 DNGVDVVVATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQ 192
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-----SLYSIATSMYEKPSI 333
+++FSATMP I + +L +P+ + + +Q +A S Y +A + KP+
Sbjct: 193 TVLFSATMPSRIDGMARAHLTDPVRILIA--REQPVAGEAPRVRQSAYLVARA--HKPAA 248
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+G+++ + IVF +++ + DRL M + Y E LHG +SQ QR+R + R G
Sbjct: 249 LGRVLDVESPTA-AIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRGG 307
Query: 393 RFNILIATDVAARGLDV 409
++L+ATDVAARGLDV
Sbjct: 308 TADLLVATDVAARGLDV 324
>gi|354557785|ref|ZP_08977043.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550579|gb|EHC20016.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 530
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 197/319 (61%), Gaps = 23/319 (7%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
++ +S+ ++ +L+ G + PIQK + A++G D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 10 EIALSKQVLQSLSEMGFEEPSPIQKEAIPLALEGVDLIGQAQTGTGKTAAFGIPIIEKVN 69
Query: 163 -KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
KF ++L+PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 70 PKFQAVQ-------AIILSPTRELAVQVSEELAKIGKYRHVKILPIYGGQSIDRQIRALR 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQ 278
+G VVGTPGR++D +KR L L V+ VVLDEAD+ML +GF ED+E IL+ + P++RQ
Sbjct: 123 FGSQVVVGTPGRILDHLKRGTLKLQYVKMVVLDEADEMLDMGFVEDIEHILKEVPPEDRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ-- 336
M+FSATMP IR L Y+K+P +V + D +++ I YE I
Sbjct: 183 VMLFSATMPLAIRKLAQHYMKDPKSVAVSRDE-------LTVPLIEQVFYETRDKIKVDA 235
Query: 337 --LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
I + G+ I+F +TKR D L ++ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 236 LCRIIDMEDIGQAIIFCRTKRGVDELVASLEARGYFADALHGDLSQQQRDRVMKRFRDGK 295
Query: 394 FNILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ NV
Sbjct: 296 IELLVATDVAARGLDIDNV 314
>gi|374300342|ref|YP_005051981.1| DEAD/DEAH box helicase [Desulfovibrio africanus str. Walvis Bay]
gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 532
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 207/351 (58%), Gaps = 24/351 (6%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L +S++++ A+ G + PIQ + M GRD++G+A+TGTGKT AFGIP
Sbjct: 2 ENLRFESLTLSKEMLKAIEDMGFEEASPIQALAIPLVMAGRDVVGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
IL+ + R + LVL PTRELA QV +E + A +L + VYGG PI
Sbjct: 62 ILEAV------DPRSHDLQALVLCPTRELAIQVAEELNTLAKYKLNLRVLPVYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q +AL GV V+GTPGRV+D ++R L L +V+ VVLDEAD+ML +GF ED+E IL+ +
Sbjct: 116 QFKALRQGVQIVIGTPGRVMDHMERGTLKLGKVRMVVLDEADEMLDMGFREDIERILDDV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++ FSATM P I L KYL P + V S + L ++ ++ YE P
Sbjct: 176 PEERQTIFFSATMRPEIMRLAEKYLDKP---EFVKVSHKVL----TVPNVEQIYYEVPR- 227
Query: 334 IGQL-----ITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLS 387
G+L I + +VF TK+ D L H A+ Y + LHGD++Q+QR+R ++
Sbjct: 228 FGRLEAMCRIIDFYNPKLTVVFANTKKGVDELVEHLQARGYMADGLHGDMNQAQRDRVMA 287
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
FR G ILIATDVAARG+DV +++ V + +V++ +I R G++
Sbjct: 288 KFRAGSIEILIATDVAARGIDVEDIEAVFNYDIP-SDVEYYVHRIGRTGRA 337
>gi|407068769|ref|ZP_11099607.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 662
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/318 (41%), Positives = 193/318 (60%), Gaps = 13/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ +I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L + +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q ++FSATMPP ++++ ++YL+NP VD+ G + D ++ EK +
Sbjct: 180 TAQRVLFSATMPPMVKTIVDRYLRNPARVDVAGTN--HTVDKVAQNFWVVKGVEKDEAMS 237
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 238 RLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDV ARGLDVP +
Sbjct: 297 DILVATDVVARGLDVPRI 314
>gi|406668916|ref|ZP_11076207.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
gi|405585197|gb|EKB59032.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
Length = 547
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 197/321 (61%), Gaps = 13/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ ++L+I +++ G +L PIQ+ + A+ G D+IG+A+TGTGKT AFGIP+L
Sbjct: 1 MEFNQLNIKPELIQIFDELGFEELTPIQRDAIPIALTGDDLIGQAQTGTGKTAAFGIPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMR 216
+ + N R L++APTRELA QV++E + L VYGGTPI Q+
Sbjct: 61 EHLDLSN------RTIQGLIIAPTRELAIQVQEELYRYGKLLKAKVYSVYGGTPIGKQIE 114
Query: 217 ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L Y +VGTPGR++DL+ RN L+ S+++ +VLDEAD+ML++GF ED+ I+ P
Sbjct: 115 RLKRYNPQIIVGTPGRILDLMNRNVLDFSQLEQLVLDEADEMLNMGFIEDIRAIIRATPD 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ+M+FSATMP I++L ++L++P V + ++ Q AD I Y S EK I+
Sbjct: 175 SRQTMLFSATMPSEIKALAEEFLRHPQHVQI--EAQQMTADLIDQYFTKCSDGEKFDILT 232
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ I H + I+F +TK+ D + +A + YN E +HGDI+Q +R + +DG
Sbjct: 233 RFIDIH-NPKQAIIFCRTKKRVDEVGRGLALRGYNAEMIHGDITQQKRTSVIKELKDGVL 291
Query: 395 NILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 292 EILVATDVAARGLDISGVTHV 312
>gi|383777440|ref|YP_005462006.1| putative RNA helicase [Actinoplanes missouriensis 431]
gi|381370672|dbj|BAL87490.1| putative RNA helicase [Actinoplanes missouriensis 431]
Length = 550
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 195/316 (61%), Gaps = 16/316 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +++ AL+ G + PIQ + P + GRD++G+A TGTGKT AF +P+L +
Sbjct: 6 FADLQLRPELLRALSDLGYEEPTPIQAEAIPPLLDGRDVLGQAATGTGKTAAFALPVLQR 65
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRAL 218
+ P LVL PTRELA QV + FH A L T + +YGG PI Q++AL
Sbjct: 66 LAGVTSP-----TPAALVLVPTRELAMQVSQAFHRYARDLGTRVVPIYGGQPIGRQLQAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ GVD VV TPGR +D I R L+LS V+ VVLDEAD+ML +GFAED+E ILE + RQ
Sbjct: 121 ERGVDVVVATPGRALDHISRGTLDLSGVRTVVLDEADEMLDMGFAEDIEAILEETAEERQ 180
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI----SLYSIATSMYEKPSII 334
+++FSATMP I ++ ++L+ P+ + + G ++ + + S Y +A + KP+ +
Sbjct: 181 TVLFSATMPGRIDAIARRHLREPVRIQM-GRAEPEPGEAPLVRQSAYVVARA--HKPAAL 237
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G+++ A IVF +T+ + D+L + + E LHG +SQ R+R ++ RDGR
Sbjct: 238 GRVLDVEAPTA-AIVFCRTREEVDQLTETLNGRGQRAEALHGGMSQEHRDRVVNRLRDGR 296
Query: 394 FNILIATDVAARGLDV 409
++L+ATDVAARGLD+
Sbjct: 297 ADLLVATDVAARGLDI 312
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 192/314 (61%), Gaps = 12/314 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S+ ++ A+ G + PIQ+ + + GRD+I +A+TGTGKT AF +PI++++
Sbjct: 5 ADLGLSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIERL 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
GR P LVLAPTRELA QV + FH+ DT + VYGG PI Q+RAL
Sbjct: 65 ------QPNGRRPQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALR 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+ V+ VVGTPGRV+D I+R L+LS V VV+DEAD+ML +GF EDVE IL+ +P RQ+
Sbjct: 119 HPVEVVVGTPGRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
+FSAT+P + +L +YL++P V + + ++ I + K + +++
Sbjct: 179 ALFSATIPDRVAALARRYLRDPARVAV--EPERVTVPQIEQTYVEVVQRAKVEALTRIL- 235
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ I+F +TKR D L + Y E LHGD+SQ QR+R ++ FR G+ +LI
Sbjct: 236 DMETPPSAIIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLI 295
Query: 399 ATDVAARGLDVPNV 412
ATDVAARGLDV +
Sbjct: 296 ATDVAARGLDVEGI 309
>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 543
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 129/321 (40%), Positives = 195/321 (60%), Gaps = 13/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L++S +I+ A+ G + PIQ + M G D+IG+++TGTGKT AFGIP+L
Sbjct: 4 LKFNELNLSNEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGIPVL 63
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
+K + + + ++L PTRELA QV +E F + ++ + VYGG PI QM
Sbjct: 64 EKT------NAKNKAVQSVILCPTRELAIQVAEELKLFSKYKKGINIVPVYGGQPIQRQM 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL G V+GTPGRVID ++R L L V+LDEAD+ML +GF +D+E+IL+ +P+
Sbjct: 118 IALSKGAQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPE 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ++ FSATMP SLT KY +P T+ +V S++ I Y ++K +
Sbjct: 178 GRQTVFFSATMPKEFLSLTKKYQHSPETIKVV--SEKLTVPSIEQYYFDIKEHQKLEALT 235
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ + + +VF TK+ D + ++ A+ Y + +HGD++QSQR R +S FR+G
Sbjct: 236 RCLDMYDP-KLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSI 294
Query: 395 NILIATDVAARGLDVPNVDLV 415
+LIATDVAARG+DV +D+V
Sbjct: 295 ELLIATDVAARGIDVDGIDMV 315
>gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4]
gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4]
Length = 619
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 197/325 (60%), Gaps = 13/325 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFRDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV+ VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVIVGTPGRVQDLINRERLHLDEVKTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P + Q ++FSATMPP ++S+ ++L++P+TVD+ G + D + EK
Sbjct: 176 HSPDSAQRVLFSATMPPMLKSICERFLRSPVTVDVAGKN--HTVDKVQQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
G +IL+ATDV ARGLDVP ++ V
Sbjct: 293 KGVIDILVATDVVARGLDVPRINHV 317
>gi|157863878|ref|XP_001687490.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
Length = 674
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 192/326 (58%), Gaps = 13/326 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ +++ +V AL RGI +FP+Q M+ D++ +ARTG+GKTLAFGIPI+++
Sbjct: 88 FSEFEMNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVER 147
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++K RGR P ++ PTRELA QV+ + L +YGG ++Q R L
Sbjct: 148 LLKLPSHLTRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVTALYGGVAYANQERVLRS 207
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--- 277
GVD VV TPGR D +++ L+ V LDEAD ML +GF +D+E++L ++ +
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267
Query: 278 -------QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
Q+++FSAT+P W+ + + K+ +D+VG + A I Y + E
Sbjct: 268 GAERPAHQTLLFSATVPEWVHTCSF-IAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
S++ LI ++ G+ +VFT TK+D L+ K + + LHGD+ Q QRE T+ +F
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSF 385
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
RD +F++LIATDVAARGLD+P VDLV
Sbjct: 386 RDNKFSVLIATDVAARGLDLPMVDLV 411
>gi|359778006|ref|ZP_09281280.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
gi|359304860|dbj|GAB15109.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
Length = 697
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 197/325 (60%), Gaps = 13/325 (4%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +P
Sbjct: 52 GVRFTDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPA 111
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQ 214
L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+ Q
Sbjct: 112 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 171
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFAEDVE I ++ P
Sbjct: 172 LAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTP 231
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKP 331
++RQ +FSATMP IR ++ +YL NP + + K + G ++ Y ++
Sbjct: 232 ESRQVALFSATMPSQIRRMSKQYLNNPAEISV----KSKTSTGTNIKQRYLQVMGPHKLD 287
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ L E G I F +TK + LA + ++ + ++GDI Q QRERT+ A +
Sbjct: 288 AMTRILEVEEFDG--VIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALK 345
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
+GR +IL+ATDVAARGLDV + V
Sbjct: 346 EGRIDILVATDVAARGLDVERISHV 370
>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 732
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 202/329 (61%), Gaps = 9/329 (2%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D +++EG+ + L + ++AAL G K PIQ+ + ++G D++G A+TGTGKT
Sbjct: 54 DKAEEEGVRFTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTA 113
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +P L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG
Sbjct: 114 AFALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
+P Q+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE
Sbjct: 174 SPYGPQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEK 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSM 327
ILE P ++Q +FSATMP IR + +YL +P V + + + IS Y
Sbjct: 234 ILEGTPDSKQVALFSATMPNSIRKIAQQYLNDPREVRVKAKT--TTSSNISQRYMQVMHS 291
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
++ ++ L E+ G IVF +TK++ + +A + A+ + ++GDI Q RERT+
Sbjct: 292 HKLDAMTRVLEVENYDG--IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTV 349
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLV 415
A RDGR +IL+ATDVAARGLDV + LV
Sbjct: 350 DALRDGRIDILVATDVAARGLDVERISLV 378
>gi|343500286|ref|ZP_08738182.1| ATP-dependent RNA helicase DeaD [Vibrio tubiashii ATCC 19109]
gi|418480787|ref|ZP_13049842.1| cold-shock DEAD-box protein A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820665|gb|EGU55483.1| ATP-dependent RNA helicase DeaD [Vibrio tubiashii ATCC 19109]
gi|384571547|gb|EIF02078.1| cold-shock DEAD-box protein A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 648
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 193/321 (60%), Gaps = 13/321 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
P+L+K+ R P +VLAPTRELA QV K ++ L + +YGG I
Sbjct: 63 PLLNKLDLAQ------RKPQAIVLAPTRELAIQVAAEVKNLGQNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++S+ ++L++P TVD+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKSIVERFLRDPETVDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 294 GVIDILVATDVVARGLDVPRI 314
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 198/320 (61%), Gaps = 12/320 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L+IS+ + ++ R G + PIQ+ + M+G+D+IG+A+TGTGKT AFGIP++
Sbjct: 2 VKFSELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLI 61
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + K G N L++APTRELA QV +E + ++ + VYGG IS Q+R
Sbjct: 62 EKI---DTKDG---NVQGLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIR 115
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL +VGTPGR++D I R L L V ++LDEAD+ML++GF ED++ I+ +P
Sbjct: 116 ALKNRPQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDT 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP IR + K++K P V + S + + I + + + EK + +
Sbjct: 176 RQTLLFSATMPDAIRRIAEKFMKTPEIVKI--KSKEMTVENIEQFYVKSVEREKFDFLSR 233
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + IVF +TKR D LA A+ + Y E +HGD+SQ++R L F+ G+ +
Sbjct: 234 LLNVQ-QPELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKID 292
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 293 ILVATDVAARGLDISGVSHV 312
>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
5219]
Length = 431
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 194/323 (60%), Gaps = 14/323 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L++S+DI A+ G + PIQ + M+G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ESLTFKDLNLSKDIERAVEDMGFEEPTPIQSQSIPYLMEGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
L+ + + + LVL PTRELA QV +E + A +T + VYGG PI Q
Sbjct: 62 ALEML------DVKSKKVQVLVLCPTRELANQVAEEMSKLAKYQNTKMLPVYGGQPIDRQ 115
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL GV V+GTPGR++D ++R L L +V+ VVLDEAD+ML +GF ED+E IL R P
Sbjct: 116 IKALRRGVHIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEMLDMGFREDIEFILSRAP 175
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA-DGISLYSIATSMYEKPSI 333
+Q+++FSATMP I LT KY +NP V V +KL I Y K +
Sbjct: 176 GKKQTVLFSATMPKPIIKLTKKYQQNPQMVKTV---HKKLTVPQIEQYYFEVKDNAKTEV 232
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +LI + +VF TK++ D+ + A+ Y + +HGD+ Q+QRER +S FR G
Sbjct: 233 LCRLIDIY-NFKSSLVFCNTKKNVDKQVETLKARGYLVDGMHGDMRQAQRERVMSNFRKG 291
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
L+ATDVAARG+DV +++ V
Sbjct: 292 EIETLVATDVAARGIDVESIEAV 314
>gi|357055243|ref|ZP_09116317.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
gi|355383199|gb|EHG30285.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
Length = 569
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 194/323 (60%), Gaps = 13/323 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFG+P
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
+L K+ + + +VL PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G +VGTPGRV+D ++R + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGAQVIVGTPGRVMDHMRRKTIKADHVLTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMP I + K+ K+P+TV ++ + ++ Y K +
Sbjct: 176 PEERQTLMFSATMPQAIAEIARKFQKDPVTVRVI--KKELTVPKVTQYYYEVKPKNKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A IVF TKR D L + + Y E LHGD+ Q QR+R + +FR+G
Sbjct: 234 MSRLLDMYAP-KLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
R +IL+ATDVAARG+DV +V+ V
Sbjct: 293 RTDILVATDVAARGIDVGDVEAV 315
>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 559
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 213/369 (57%), Gaps = 11/369 (2%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
+++ A + K + + L + DIV AL+ GI + F IQ L A++G D+IG+AR
Sbjct: 9 NNHTAGPVAGKPDNPTFADLGVHPDIVRALSESGIERTFDIQALTLPLALRGEDVIGQAR 68
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT-- 202
TGTGKTL FG+P+L +++ + P LV+ PTREL QV ++ E+ L
Sbjct: 69 TGTGKTLGFGVPLLQRLVTPGDG-----TPQALVVVPTRELCLQVSQDLAEAGKYLGVRI 123
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+YGG P Q+++L GVD V+GTPGR++DL ++ L L ++ +VLDEAD+ML +GF
Sbjct: 124 TSIYGGRPYESQIQSLRSGVDVVIGTPGRLLDLAEQRNLVLGKISTLVLDEADEMLDLGF 183
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322
D+E IL +P++RQ+M+FSATMP I +L +L+ P + + + + +
Sbjct: 184 LPDIERILRMVPEDRQTMLFSATMPGPILTLARTFLRQPTHIRAEAGETGAIHERTTQFV 243
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQ 381
+KP +I +++ + G ++FT+TKR A ++A + + + +HGD+ Q
Sbjct: 244 YRAHSLDKPELIAKVLQAEGR-GLTMIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGA 302
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSR 439
RE+ L AFR G+ +IL+ATDVAARG+DV V V + E ++ + R G++
Sbjct: 303 REQALRAFRSGKVDILVATDVAARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTG 362
Query: 440 VLSEMLDAD 448
V ++D D
Sbjct: 363 VAITLVDWD 371
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 190/323 (58%), Gaps = 33/323 (10%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +++DI+ A+ G + IQK + ++G D+IG+A+TGTGKTLAFG P+++KI K
Sbjct: 9 LGLNEDILKAINELGFEEPSKIQKEAIPVVLEGFDVIGQAQTGTGKTLAFGAPVINKIKK 68
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
K +V+ PTRELA QV E + T+ VYGG PI Q+RA+ G
Sbjct: 69 STGKIS------SIVITPTRELAIQVNDEISRIGKYTRVRTLPVYGGKPIDRQIRAIKQG 122
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD +VGTPGRV+DLI+R ++LS V F+VLDEAD+ML +GF +D+E I+ P++RQ+M+
Sbjct: 123 VDVLVGTPGRVLDLIRRRVVDLSRVNFLVLDEADEMLDMGFIDDIEEIIRNCPEDRQTML 182
Query: 282 FSATMPPWIRSLTNKYL----------KNPLTVDLVGDSDQKLADGISLYSIATSM-YEK 330
FSATMPP I+ L Y+ KN +TV V ++ S+ + Y++
Sbjct: 183 FSATMPPQIKRLAKSYMKEDMKHISIVKNTITVSTVSQYYFEIKQNNRFESLCRILDYDE 242
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAF 389
PS I+F +TK+ D L + + YN E +HGD++Q R TL F
Sbjct: 243 PS-------------SAIIFCKTKKGVDELVEGLQVRGYNVEGMHGDMTQDHRMNTLRKF 289
Query: 390 RDGRFNILIATDVAARGLDVPNV 412
++G L+ATDVAARG+D+ ++
Sbjct: 290 KEGNLEFLVATDVAARGIDIESI 312
>gi|389818136|ref|ZP_10208577.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
gi|388464068|gb|EIM06404.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
Length = 507
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 198/320 (61%), Gaps = 12/320 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L+IS+ + ++ R G + PIQ+ + M+G+D+IG+A+TGTGKT AFGIP++
Sbjct: 2 VKFSELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLI 61
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + K G N L++APTRELA QV +E + ++ + VYGG IS Q+R
Sbjct: 62 EKI---DTKDG---NVQGLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIR 115
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL +VGTPGR++D I R L L V ++LDEAD+ML++GF ED++ I+ +P
Sbjct: 116 ALKNRPQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDT 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP IR + K++K P V + S + + I + + + EK + +
Sbjct: 176 RQTLLFSATMPDAIRRIAEKFMKTPEIVKI--KSKEMTVENIEQFYVKSVEREKFDFLSR 233
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + IVF +TKR D LA A+ + Y E +HGD+SQ++R L F+ G+ +
Sbjct: 234 LLNVQ-QPELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKID 292
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 293 ILVATDVAARGLDISGVSHV 312
>gi|300779595|ref|ZP_07089451.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533705|gb|EFK54764.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 440
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 191/320 (59%), Gaps = 4/320 (1%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ ++L ++ +IV AL GI ++F IQ+ L A+ GRD+IG+ARTG GKT AFG+
Sbjct: 3 DQQPTFAELGVAAEIVEALGESGIERVFSIQELTLPLALAGRDLIGQARTGMGKTFAFGV 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISH 213
P+LD++ P LV+ PTRELA QV ++ +A + +YGG P
Sbjct: 63 PLLDRVFDDAAIEELDGTPRALVITPTRELAVQVSEDLTLAASKTPVRLTTIYGGRPYDE 122
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL+ GVD VVGTPGR++DL +R L L V +VLDEAD+ML +GF D++ + L
Sbjct: 123 QLNALEAGVDVVVGTPGRLLDLHERGDLVLDRVAILVLDEADEMLDLGFLPDIQRLWGAL 182
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
Q Q+M+FSATMP I L + + P+ + +L D + +KP +
Sbjct: 183 SQPLQTMLFSATMPAPILKLAREMMNKPVHIRAESADSSQLHDTTKQVVFVSHKMDKPEV 242
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G+ I+FT+TKR A +A +A + + +HGD+ QS RER+L AFR G
Sbjct: 243 VARVLQADGR-GRTIIFTRTKRTAAEVAEDVARRGFAVGSVHGDLGQSARERSLEAFRKG 301
Query: 393 RFNILIATDVAARGLDVPNV 412
IL+ATDVAARG+DV +V
Sbjct: 302 DVEILVATDVAARGIDVDDV 321
>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
Length = 643
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 193/321 (60%), Gaps = 13/321 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
P+L+K+ R P +VLAPTRELA QV K ++ L + +YGG I
Sbjct: 63 PLLNKLDLAQ------RKPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++S+ ++L++P T+D+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKSIVERFLRDPETIDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 294 GVIDILVATDVVARGLDVPRI 314
>gi|124026185|ref|YP_001015301.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
NATL1A]
Length = 589
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/320 (42%), Positives = 198/320 (61%), Gaps = 15/320 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ + S++++ ++ +G S PIQKA + + GRD++G+A+TGTGKT AF +PIL++
Sbjct: 38 FSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILER 97
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ K N H P LVLAPTRELA QV + F + P + +YGG+ +Q+
Sbjct: 98 LKK-NVGH-----PQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINT 151
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGRV+D +++ LN S + +VLDEAD+ML +GF +DVE ILE+LP+ R
Sbjct: 152 LRRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEER 211
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMP IR L+ KYL +P + + + ++L Y ++Y+ ++ Q
Sbjct: 212 QLVLFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIR--QRYISVQNVYKVNAL--Q 267
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+ E I+F +TK +A + + YN L+GDI Q+QRERT+ R G N
Sbjct: 268 RVLEAVSEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSIN 327
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLDV + LV
Sbjct: 328 ILVATDVAARGLDVDRIGLV 347
>gi|145592945|ref|YP_001157242.1| DEAD/DEAH box helicase [Salinispora tropica CNB-440]
gi|145302282|gb|ABP52864.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
Length = 621
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 200/325 (61%), Gaps = 8/325 (2%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+ E ++L ++ V AL GI++ F IQ+ L A++G D+IG+A TGTGKTL FG
Sbjct: 93 RPEAPTFAELGARKETVDALNAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFG 152
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPIS 212
+P+L+++ F G P LV+ PTREL QV K+ H + + + + +YGG
Sbjct: 153 VPLLERV--FAPAEGGDGTPQALVVVPTRELGIQVAKDLHAAGSTRGVRVLPIYGGVAYE 210
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GV+ +VGTPGR++DL K+ L L V+ +VLDEAD+ML +GF +DVE IL
Sbjct: 211 PQIEALRTGVEILVGTPGRLLDLAKQKQLKLDRVRALVLDEADRMLDLGFLDDVEKILAM 270
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP+ RQ+M+FSATMP I +L+ ++L+ P+T+ ++ + + T K
Sbjct: 271 LPEERQTMLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSLNKIE 330
Query: 333 IIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
I+ +++ AKG G ++FT+TKR ADR+A + + + +HGD+ Q RER L AFR
Sbjct: 331 IVARIL--QAKGRGLTMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFR 388
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
G+ + L+ATDVAARG+DV V V
Sbjct: 389 TGKIDTLVATDVAARGIDVSGVTHV 413
>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 520
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 207/349 (59%), Gaps = 18/349 (5%)
Query: 79 HAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD 138
H + A D A D + +E + +S IV ALA +GIS FPIQ L A++G D
Sbjct: 18 HNEPAADIEAAGKDLNLEEKT-FADYGVSAPIVDALAAKGISHPFPIQALTLPVALKGSD 76
Query: 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKH----GRGRNPLCLVLAPTRELAKQVEKEFH 194
+IG+A+TGTGKTL FGIP++++ I +E P L + PTRELAKQV ++
Sbjct: 77 IIGQAKTGTGKTLGFGIPMIERCIGPSEPGFDALAHPGAPQGLAVVPTRELAKQVAQDLR 136
Query: 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
++A S+ + VYGG Q++ L+ G + +VGTPGR+IDL+K LNL V+ VVLD
Sbjct: 137 DAAKNRSIRIVEVYGGRAYEPQIKDLEKGAEIIVGTPGRLIDLMKHRTLNLGAVRAVVLD 196
Query: 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
EAD+ML +GF EDVE IL P R +M+FSATMP + ++ +Y+ + + D+
Sbjct: 197 EADEMLDLGFLEDVEKILSATPPTRHTMLFSATMPGPVIAMARRYMSHATHIRAQAHDDE 256
Query: 313 KLADGISLYSIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AK 366
++ S+ +Y K ++ +++ + G I+FT+TKR A R+A + A+
Sbjct: 257 S----TTVQSVRQVVYRAHALNKIEVLARILQARGR-GLTIIFTRTKRTAARVAEDLAAR 311
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+ LHGD+ Q RE+ L AFR G+ ++L+ATDVAARG+DV NV V
Sbjct: 312 GFATGALHGDLGQGAREQALRAFRHGKIDVLVATDVAARGIDVDNVTHV 360
>gi|333986675|ref|YP_004519282.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
sp. SWAN-1]
gi|333824819|gb|AEG17481.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. SWAN-1]
Length = 530
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 197/326 (60%), Gaps = 23/326 (7%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L LDIS +I A+A G + PIQ + + GRD+IG+A+TGTGKT AFGIPIL
Sbjct: 4 LRFKDLDISSEIENAVADMGFEEATPIQSLAIPHVLDGRDVIGQAQTGTGKTAAFGIPIL 63
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQM 215
+ + + R+ ++L PTRELA QV +E + + + I V YGG PI Q+
Sbjct: 64 EMVDPGD------RSLQAVILCPTRELAIQVAEEIRKLSKYMSKIKVLPIYGGQPIERQI 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL GV ++GTPGRV+D ++R L + V+ +VLDEAD+ML +GF +D+E++L +P
Sbjct: 118 KALKKGVQVIIGTPGRVMDHMRRGTLKMDSVKIMVLDEADEMLDMGFRDDIEIVLRDMPS 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----K 330
RQ+++FSATM I +LT KY NP + +V +++ I +E K
Sbjct: 178 ERQTLLFSATMSRDILNLTRKYQNNPEFLKVVHQE-------LTVPEIQQIYFEVKEKMK 230
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAF 389
++ +L+ H +VF TKR D+L H + Y + LHGD++QSQR+R ++ F
Sbjct: 231 LELLSRLLDIH-NFKLSLVFCNTKRRVDKLVTHLQIRGYAADGLHGDMTQSQRDRVMAKF 289
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
R+G+ +L+ATDVAARG+DV NV+ V
Sbjct: 290 RNGKIEVLVATDVAARGIDVENVEAV 315
>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
NATL2A]
Length = 589
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/320 (42%), Positives = 198/320 (61%), Gaps = 15/320 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ + S++++ ++ +G S PIQKA + + GRD++G+A+TGTGKT AF +PIL++
Sbjct: 38 FSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILER 97
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ K N H P LVLAPTRELA QV + F + P + +YGG+ +Q+
Sbjct: 98 LKK-NVGH-----PQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINT 151
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGRV+D +++ LN S + +VLDEAD+ML +GF +DVE ILE+LP+ R
Sbjct: 152 LRRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEER 211
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMP IR L+ KYL +P + + + ++L Y ++Y+ ++ Q
Sbjct: 212 QLVLFSATMPSEIRRLSKKYLNSPAEITIKATELKERLIR--QRYISVQNVYKVNAL--Q 267
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+ E I+F +TK +A + + YN L+GDI Q+QRERT+ R G N
Sbjct: 268 RVLEAVSEEGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSIN 327
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLDV + LV
Sbjct: 328 ILVATDVAARGLDVDRIGLV 347
>gi|375132206|ref|YP_005048614.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
Length = 632
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 193/318 (60%), Gaps = 13/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQM 215
+K+ N+ P +V+APTRELA QV K ++ L + +YGG I QM
Sbjct: 66 NKL-DLNQY-----KPQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DLI R L+L E VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 120 RALKSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q ++FSATMPP ++ + +++L++P VD+ G S+Q +A Y + + + ++
Sbjct: 180 TAQRVLFSATMPPMVKDIVDRFLRDPARVDVAG-SNQTVAKVEQQYWVVKGVEKDEAMAR 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 239 LLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDV ARGLDVP +
Sbjct: 297 DILVATDVVARGLDVPRI 314
>gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
Length = 442
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 203/330 (61%), Gaps = 7/330 (2%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+++ S + + L ++ +IV ALA RGI + F IQ+ L A+ G+D+IG+ARTG
Sbjct: 1 MSFQQSETTQPPTFAALGVAAEIVDALASRGIVRTFAIQELTLPIALGGQDLIGQARTGM 60
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICV 205
GKTL FG+P+LD++ + P L++ PTRELA QV ++ ++ +L +
Sbjct: 61 GKTLGFGVPVLDRVFDDADIEELDGTPRALIVVPTRELAVQVGEDLTLASQNLPLRLATI 120
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG P Q++ L+ GVD +VGTPGR++DL ++ L L V +VLDEAD+ML +GF D
Sbjct: 121 YGGRPYEEQIKLLEKGVDVIVGTPGRLLDLAQQGHLQLDHVAILVLDEADEMLDLGFLPD 180
Query: 266 VEVILERLPQNR-QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
+E ILE L N+ Q+M+FSATMP I +L ++ P+ + + + + +
Sbjct: 181 IEKILELLHGNKHQTMLFSATMPGPILTLARTFMNRPIHIRAESGDENQTHESTRKVTFQ 240
Query: 325 TSMYEKPSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQR 382
+K +II + + AKG GK I+F +TKR A +A +A + + +HGD+ Q+ R
Sbjct: 241 AHRMDKLAIISRAL--QAKGRGKTIIFARTKRSAAEVADELARRGFRVGAVHGDLGQAAR 298
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNV 412
E++L+AFR+G+ IL+ATDVAARG+DV +V
Sbjct: 299 EKSLNAFREGKVEILVATDVAARGIDVDDV 328
>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
Length = 695
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 198/329 (60%), Gaps = 13/329 (3%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S +EG + L + +++AL G K PIQ+ + + G+D++G A+TGTGKT AF
Sbjct: 99 SHEEGTRFTDLGLDPRVLSALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAF 158
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTP 210
+P L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG+P
Sbjct: 159 ALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSP 218
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE IL
Sbjct: 219 YGPQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETIL 278
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSM 327
E P +Q +FSATMP IR + +YL +P V + K G ++ Y
Sbjct: 279 EGTPDAKQVALFSATMPNSIRKIAQQYLNDPTEVRV----KTKTTTGANIRQRYMQVMHS 334
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
++ ++ L E+ G IVF +TK++ + +A + A+ + ++GDI Q RERT+
Sbjct: 335 HKLDAMTRVLEVENYDG--IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTV 392
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLV 415
A RDGR +IL+ATDVAARGLDV + LV
Sbjct: 393 DALRDGRIDILVATDVAARGLDVERISLV 421
>gi|158312770|ref|YP_001505278.1| DEAD/DEAH box helicase [Frankia sp. EAN1pec]
gi|158108175|gb|ABW10372.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
Length = 671
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 162/440 (36%), Positives = 241/440 (54%), Gaps = 33/440 (7%)
Query: 33 SHLAAAKSGPVIPRHDDI-----IKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY 87
SH AA + P PRH I S FS G R S PL S+ Q+ ++
Sbjct: 29 SHQAADRLAP--PRHRAAGAARHIASGFSVGHRSEQTRSVPLSVTST------QTPNNEP 80
Query: 88 VA--YDDSSKDEGLDIS----------KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ 135
++ D +S E ++ ++ + + VAALA GI + F IQ+ L A++
Sbjct: 81 ISDGSDTTSPAETPSLADTPSLAPTFAEIGVRAETVAALAEVGIIRPFAIQELTLPLALE 140
Query: 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195
D+IG+ARTGTGKTLAFGIPI+ +++ ++ GR P LV+ PTREL QV +
Sbjct: 141 RTDIIGQARTGTGKTLAFGIPIV-QVVTAPDEGADGR-PQALVVVPTRELCVQVTADIAR 198
Query: 196 SA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+ L + VYGG Q+ AL GVD VVGTPGR++DL ++ AL+L+ V+ +VLDE
Sbjct: 199 AGLGRGLRVLSVYGGRAYEPQLSALRAGVDIVVGTPGRLLDLARQKALDLAGVRALVLDE 258
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
AD+ML +GF DVE IL LP+ R +M+FSATMP + SL +++ P+ V + +
Sbjct: 259 ADEMLDLGFLPDVERILAFLPEQRHTMLFSATMPGPVISLARRFMTRPVHVRAEQPDEGR 318
Query: 314 LADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEP 372
+ +K ++ +++ ++ G +VF +T+R AD++A +A + + P
Sbjct: 319 TVPNTQQHVFRAHALDKMEVLARVLQAESR-GLAMVFVRTRRTADKVAEDLARRGFAAAP 377
Query: 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--T 430
+HGD+ Q QRE+ L AFR G+ ++L+ATDVAARG+DV V V E +L
Sbjct: 378 VHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDVGGVTHVVNYQCPEDEHAYLHRIG 437
Query: 431 QISRPGKSRVLSEMLDADLL 450
+ R G S V +D D L
Sbjct: 438 RTGRAGGSGVAVTFVDWDDL 457
>gi|403738909|ref|ZP_10951510.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
gi|403191559|dbj|GAB78280.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
Length = 513
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 204/362 (56%), Gaps = 13/362 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G + I +I ALA GI FPIQ L A+ G D+IG+A+TGTGKTL FG+P+
Sbjct: 31 GTTFASFGIHPEIADALAEHGIVAPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGVPL 90
Query: 158 LDKIIKFNEKH----GRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPI 211
L+K++ + P LV+ PTRELA QV + + + C+YGG
Sbjct: 91 LNKVVAPQDPGYADLDYPNRPQALVVVPTRELAVQVAADLTRAGKRRGIRVECIYGGRAF 150
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ AL GV+ VVGTPGR+IDL ++ LNL ++ VVLDEAD+ML +GF DVE IL
Sbjct: 151 EPQITALTRGVEVVVGTPGRLIDLNQQRHLNLHSIRTVVLDEADEMLDLGFLPDVERILG 210
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD-LVGDSDQKLADGISLYSIATSMYEK 330
P +RQ+M+FSATMP + +L +Y+ P + + D I + +K
Sbjct: 211 ETPTSRQTMLFSATMPGAVVALARRYMTQPTHIRAMTTGDDSHTVQAIEQFIYRAHAMDK 270
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSA 388
++ +++ AKG G IVFT+TKR A ++A + + + LHGD+ Q RE+ + A
Sbjct: 271 TEMLSRIL--QAKGRGLTIVFTRTKRTAAKVADELTDRGFAAASLHGDLGQGAREQAMRA 328
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLD 446
FR G+ ++L+ATDVAARG+DV NV V E +L + + R G++ + ++D
Sbjct: 329 FRKGKVDVLVATDVAARGIDVENVTHVVNYQCPEDEKTYLHRTGRTGRAGQTGIAITLVD 388
Query: 447 AD 448
D
Sbjct: 389 WD 390
>gi|50954624|ref|YP_061912.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951106|gb|AAT88807.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 491
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 211/357 (59%), Gaps = 19/357 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L+I QD+V ALA +GI++ FPIQ + A+ G+D+IG+A+TGTGKT FG+PI+
Sbjct: 1 MTFSELNIDQDMVDALAAKGITEPFPIQTQTIPLALTGQDIIGQAKTGTGKTFGFGLPII 60
Query: 159 DKIIKFNEKHGRGRNP----LCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPIS 212
++ G +P LV+ PTRELA QV ++ ++A + T +YGG
Sbjct: 61 QRL---------GADPEPGVQALVVVPTRELAVQVYEDLEQAASNRPTSIAAIYGGKAYE 111
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ L G VVGTPGR++DL + LNLS V+ +VLDEAD+ML +GF D+E + +
Sbjct: 112 GQIAQLKAGAQVVVGTPGRLLDLAGQRLLNLSTVREMVLDEADKMLDLGFLSDIEKLFAQ 171
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P R +M+FSATMP I +L +++ P+ + + ++ I +K
Sbjct: 172 TPATRHTMLFSATMPGPIVALARRFMTRPIHIRATDPDEGQIQANIKHLVYRAHSLDKDE 231
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++ +++ + GK ++FT+TKR A +L + + +N +HGD++Q QRER ++AF+
Sbjct: 232 VVARILQSEGR-GKTVIFTRTKRSAAKLMEELNDRGFNAAAVHGDLNQEQRERAMAAFKA 290
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLD 446
G+ ++LIATDVAARG+DV +V V + E +L + + R GKS + +D
Sbjct: 291 GKKDVLIATDVAARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAGKSGIAVTFVD 347
>gi|374672427|dbj|BAL50318.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis IO-1]
Length = 547
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 199/319 (62%), Gaps = 16/319 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------DASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ+++FSATMP I+ + K++KNP + + + + AD I Y + T +EK ++
Sbjct: 173 EARQTLLFSATMPADIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKTKEFEKFDVL 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + Y E +HGD+ Q++R L F+ G
Sbjct: 231 TRLL-DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGH 289
Query: 394 FNILIATDVAARGLDVPNV 412
++L+ATDVAARGLDV V
Sbjct: 290 IDVLVATDVAARGLDVSGV 308
>gi|418038567|ref|ZP_12676896.1| hypothetical protein LLCRE1631_01703 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|354693215|gb|EHE92992.1| hypothetical protein LLCRE1631_01703 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 547
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 199/319 (62%), Gaps = 16/319 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------DASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ+++FSATMP I+ + K++KNP + + + + AD I Y + T +EK ++
Sbjct: 173 EARQTLLFSATMPNDIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKTKEFEKFDVL 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + Y E +HGD+ Q++R L F+ G
Sbjct: 231 TRLL-DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGH 289
Query: 394 FNILIATDVAARGLDVPNV 412
++L+ATDVAARGLDV V
Sbjct: 290 IDVLVATDVAARGLDVSGV 308
>gi|392988049|ref|YP_006486642.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392335469|gb|AFM69751.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 503
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 199/320 (62%), Gaps = 12/320 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALSGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N +G LV+APTRELA Q ++E + + VYGG I Q+R
Sbjct: 61 EKI-DTNRHELQG-----LVIAPTRELAIQTQEELYRLGRDKRVRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIENIISKVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+++ K++K+P V + + + AD I Y + YEK I+ +
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPTHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F++G +
Sbjct: 233 LFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLD 291
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 292 ILVATDVAARGLDISGVTHV 311
>gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
Il1403]
gi|385829922|ref|YP_005867735.1| DEAD/DEAH box helicase [Lactococcus lactis subsp. lactis CV56]
gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
Il1403]
gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
subsp. lactis CV56]
Length = 547
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 199/319 (62%), Gaps = 16/319 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------DASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ+++FSATMP I+ + K++KNP + + + + AD I Y + T +EK ++
Sbjct: 173 EARQTLLFSATMPNDIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKTKEFEKFDVL 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + Y E +HGD+ Q++R L F+ G
Sbjct: 231 TRLL-DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGH 289
Query: 394 FNILIATDVAARGLDVPNV 412
++L+ATDVAARGLDV V
Sbjct: 290 IDVLVATDVAARGLDVSGV 308
>gi|405382160|ref|ZP_11035982.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
gi|397321648|gb|EJJ26064.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
Length = 555
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 199/330 (60%), Gaps = 16/330 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + +QGRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLIQGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
+++K EK R+ L+LAPTREL Q+ ++F +P L V GG I+ Q
Sbjct: 63 RLLK-EEKRPDNRSVRTLILAPTRELVNQIADSLRKFIRKSP-LRINVVVGGVSINKQQL 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL RNA+ L+ V+++VLDEADQML +GF D+ I + P+
Sbjct: 121 QLERGSDILVATPGRLLDLCNRNAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMAPKR 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L YL +P+TV + K AD + Y +K ++
Sbjct: 181 RQTMLFSATMPKAIADLAGDYLTDPVTVQVT--PPGKAADKVEQYVHFVPGKNDKTVLLK 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G+ IVF +TK A++LA H Y+ +HG+ SQ QRER L FRDG
Sbjct: 239 KSLTENPD-GRAIVFLRTKHGAEKLAKHLEQVGYSVASIHGNKSQGQRERALKGFRDGAI 297
Query: 395 NILIATDVAARGLDVP------NVDLVELV 418
LIATDVAARG+D+P N DL E+
Sbjct: 298 KTLIATDVAARGIDIPAVSHVFNYDLPEVA 327
>gi|290580897|ref|YP_003485289.1| ATP-dependent RNA helicase [Streptococcus mutans NN2025]
gi|449971807|ref|ZP_21814550.1| putative ATP-dependent RNA helicase [Streptococcus mutans 2VS1]
gi|450060032|ref|ZP_21843592.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML4]
gi|450067851|ref|ZP_21846836.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML9]
gi|450093968|ref|ZP_21856845.1| putative ATP-dependent RNA helicase [Streptococcus mutans W6]
gi|450150739|ref|ZP_21876730.1| putative ATP-dependent RNA helicase [Streptococcus mutans 14D]
gi|450166956|ref|ZP_21882509.1| putative ATP-dependent RNA helicase [Streptococcus mutans B]
gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
gi|449171557|gb|EMB74214.1| putative ATP-dependent RNA helicase [Streptococcus mutans 2VS1]
gi|449202498|gb|EMC03410.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML4]
gi|449207793|gb|EMC08456.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML9]
gi|449216747|gb|EMC16840.1| putative ATP-dependent RNA helicase [Streptococcus mutans W6]
gi|449233184|gb|EMC32266.1| putative ATP-dependent RNA helicase [Streptococcus mutans 14D]
gi|449239040|gb|EMC37773.1| putative ATP-dependent RNA helicase [Streptococcus mutans B]
Length = 517
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 201/318 (63%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V +V + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIV--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|410722381|ref|ZP_11361682.1| DNA/RNA helicase, superfamily II [Methanobacterium sp. Maddingley
MBC34]
gi|410597125|gb|EKQ51762.1| DNA/RNA helicase, superfamily II [Methanobacterium sp. Maddingley
MBC34]
Length = 527
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 198/327 (60%), Gaps = 22/327 (6%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L +S+++ A+A G + PIQ L P + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ESLLFEDLKLSREMKRAIADMGFEEATPIQSLALPPILDGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L+K+ + ++L PTRELA QV +E + + T + VYGG PI Q
Sbjct: 62 VLEKL------DPTVKGVQAVILCPTRELAIQVAEEIKKLSKYKKTAVLPVYGGQPIERQ 115
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL GV ++GTPGRV+D I R L + +V+ ++LDEAD+ML +GF +D+E +LE++P
Sbjct: 116 IKALKRGVQIIIGTPGRVMDHIHRRTLRMDQVKMIILDEADEMLDMGFRDDIEFVLEQIP 175
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE----- 329
+ RQ ++FSATM P I +T KY NP + + I++ I +E
Sbjct: 176 RERQMLLFSATMSPQILGITRKYQNNPEMLKVAHQE-------ITVPEIQQIYFEVKEQM 228
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSA 388
K ++ +LI H +VF TKR DRL ++ + Y + LHGD+SQ+QR+R ++
Sbjct: 229 KLDLLTRLIDMH-NLKLSLVFCNTKRRVDRLVSNLQTRGYFADGLHGDMSQNQRDRVMNK 287
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLV 415
FR G+ IL+ATDVAARG+DV +V+ V
Sbjct: 288 FRKGQIEILVATDVAARGIDVEDVEAV 314
>gi|401414811|ref|XP_003871902.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 684
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 192/326 (58%), Gaps = 13/326 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ +++ +V AL RGI +FP+Q M+ D++ +ARTG+GKTLAFGIPI+++
Sbjct: 88 FSEFEMNPTVVKALQSRGIESMFPVQALTFNAIMRSTDVLVQARTGSGKTLAFGIPIVER 147
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++K RGR P ++ PTRELA QV+ + L +YGG ++Q R L
Sbjct: 148 LLKLPSHLIRGRGPAAVIFCPTRELAIQVQDVLCGISCGLVVTALYGGVAYANQERVLRS 207
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--- 277
GVD VV TPGR D +++ L+ V LDEAD ML +GF +D+E++L ++ +
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267
Query: 278 -------QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
Q+++FSAT+P W+ + + K+ +D+VG + A I Y + E
Sbjct: 268 GAEKPVHQTLLFSATVPEWVHTCSF-IAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326
Query: 331 PSIIGQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
S++ LI ++ G+ +VFT TK+D L+ K + + LHGD+ Q QRE T+ +F
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTK-LDSQCLHGDMQQEQRESTMKSF 385
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
RD +F++LIATDVAARGLD+P VDLV
Sbjct: 386 RDNKFSVLIATDVAARGLDLPMVDLV 411
>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
Length = 632
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 193/318 (60%), Gaps = 13/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFSDLALNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQM 215
+K+ N+ P +V+APTRELA QV K ++ L + +YGG I QM
Sbjct: 66 NKL-DLNQY-----KPQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DLI R L+L E VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 120 RALKSGAHIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q ++FSATMPP ++ + +++L++P VD+ G S+Q +A Y + + + ++
Sbjct: 180 TAQRVLFSATMPPMVKDIVDRFLRDPARVDVAG-SNQTVAKVEQQYWVVKGVEKDEAMAR 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 239 LLETEETDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDV ARGLDVP +
Sbjct: 297 DILVATDVVARGLDVPRI 314
>gi|336320086|ref|YP_004600054.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
gi|336103667|gb|AEI11486.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
Length = 581
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 209/366 (57%), Gaps = 14/366 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ D+ +IV ALA GIS FPIQ L A+ G D+IG+A+TGTGKTL FG+P+L +
Sbjct: 42 FADFDVRPEIVQALADAGISHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLHR 101
Query: 161 IIKFNEK-----HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
I+ +E+ G+ P LV+ PTRELA QV + ++ S+ + VYGG
Sbjct: 102 IVARDEEGYDQLRAPGK-PQALVVVPTRELAVQVAGDLATASARRSVRVVQVYGGRAYEP 160
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL+ GVD VVGTPGR+ID++K+ L+LS V+ VVLDEAD+ML +GF DVE +L
Sbjct: 161 QIDALNAGVDVVVGTPGRMIDMLKQRHLDLSHVRTVVLDEADEMLDLGFLPDVETLLAAT 220
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV--GDSDQKLADGISLYSIATSMYEKP 331
P +R +M+FSATMP + ++ +Y+ P + D ++ I + +K
Sbjct: 221 PASRHTMLFSATMPGAVVAMARRYMTQPTHIRAADPDDDGRQTVKNIKQVAYRAHALDKV 280
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
++ +++ + G IVF +TKR A ++A + + + LHGD+ Q RE+ L AFR
Sbjct: 281 ELLARILQAQGR-GLTIVFARTKRTAAKVADELVERGFAAGALHGDLGQGAREQALRAFR 339
Query: 391 DGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDAD 448
G+ ++L+ATDVAARG+DV +V V E +L + + R G +D D
Sbjct: 340 HGKVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYLHRTGRTGRAGNKGTAVTFVDWD 399
Query: 449 LLSSQG 454
L G
Sbjct: 400 DLPRWG 405
>gi|281490897|ref|YP_003352877.1| DEAD/DEAH box helicase [Lactococcus lactis subsp. lactis KF147]
gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. lactis KF147]
Length = 547
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 199/319 (62%), Gaps = 16/319 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------DASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ+++FSATMP I+ + K++KNP + + + + AD I Y + T +EK ++
Sbjct: 173 EARQTLLFSATMPNDIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKTKEFEKFDVL 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + Y E +HGD+ Q++R L F+ G
Sbjct: 231 TRLL-DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGH 289
Query: 394 FNILIATDVAARGLDVPNV 412
++L+ATDVAARGLDV V
Sbjct: 290 IDVLVATDVAARGLDVSGV 308
>gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
Length = 499
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 15/366 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L + +IV ALA RGI+ F IQ+ L A+ G D+IG+ARTG GKT FG+P+L +I
Sbjct: 21 ELGVRPEIVTALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRIS 80
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-----------DTICVYGGTPI 211
P LV+ PTREL QV ++ +A L + +YGGTP
Sbjct: 81 TGEATRELDGTPRALVIVPTRELCLQVTQDLKIAATGLTASTGSGTRPLKVLAIYGGTPY 140
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q AL+ GVD VVGTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E +L
Sbjct: 141 EQQTEALEKGVDVVVGTPGRLLDLANQSKLVLGKVEALVLDEADEMLDLGFHPDIEKLLR 200
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+P+ RQ+M+FSATMP I +L +L P + + + + +KP
Sbjct: 201 MVPEKRQTMLFSATMPGPIITLARTFLTKPTHIRAEAADSGATHENTTQHVYRAHSLDKP 260
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
++ +++ + G ++F +TKR A +LA +A + + +HGD+ Q RE++L AFR
Sbjct: 261 EVVARILQAEGR-GATMIFCRTKRTAQKLADDLAERGFRVGAIHGDLGQGAREKSLKAFR 319
Query: 391 DGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDAD 448
G ++L+ATDVAARG+DV +V V E ++ + R G++ V ++D D
Sbjct: 320 SGDVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWD 379
Query: 449 LLSSQG 454
L G
Sbjct: 380 DLPRWG 385
>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 718
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 207/342 (60%), Gaps = 16/342 (4%)
Query: 81 QSAVD-DYVAYDDSSKDEGLDIS--KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
QSA D D A ++S + D+S KL + DI+ A+ + G PIQ + + GR
Sbjct: 89 QSADDEDARAAENSEGTDSTDLSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGR 148
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +PI+ +I K N R+P LVLAPTRELA QV F E A
Sbjct: 149 DVVGLAQTGTGKTAAFALPIIARIDKSN------RSPQALVLAPTRELALQVADAFQEFA 202
Query: 198 P---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
++ + +YGG Q+ L G +VGTPGRVID +K+ +L++S + ++VLDEA
Sbjct: 203 DHVGGINVLPIYGGQAYGIQLSGLRRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEA 262
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML++GF EDVE ILE P +Q +FSATMP IR L+ +YL +P V + ++ +
Sbjct: 263 DEMLNMGFQEDVERILEDTPDKKQVALFSATMPNAIRRLSQQYLDDPYEVTVKAET--RT 320
Query: 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPL 373
IS + + K + +++ E + I+F +TK + + LA + A+ ++ + +
Sbjct: 321 NTNISQRYLNVAHRNKLDALTRIL-EVTEFEAMIIFVRTKYETEELAEKLRARGFSAQAI 379
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+GDI+Q QRERT+ RDGR +IL+ATDVAARGLDV + V
Sbjct: 380 NGDIAQQQRERTVDQLRDGRLDILVATDVAARGLDVDRISHV 421
>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
Length = 507
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ L++S +++ ++ R G + PIQ+A + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E + + VYGG I Q+R
Sbjct: 61 EKIDPTNHQLQ------GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDV 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+++ K++K P V + + + AD I Y + + YEK I+ +
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKEPEHVQI--KAKEMTADLIDQYYVRSKDYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G+ +
Sbjct: 233 LLDVQTP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-23m63]
gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
Length = 537
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 205/347 (59%), Gaps = 17/347 (4%)
Query: 99 LDISKLD---ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++I+K + IS+ I A+A G + PIQ + + G+D+IG+A+TGTGKT AF I
Sbjct: 1 MNITKFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSI 60
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPIS 212
PIL+ I N R+ +VL PTRELA QV E + A + T+ +YGG PI
Sbjct: 61 PILETIDPNN------RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPID 114
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+++L GV V+GTPGR ID I R L + V+ ++LDEAD+ML +GF ED+E+IL +
Sbjct: 115 RQIKSLKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSK 174
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P+ RQ+ FSATMP I LT +Y K+P + +V + Y I T K
Sbjct: 175 IPEERQTTFFSATMPRGILELTKRYQKDPEHIKVV--RKELTVSNTKQYYIETRSSNKLE 232
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
++ +L+ + +VF TKR AD L + A+ Y + LHGD+ Q+QR+ + FR+
Sbjct: 233 VLCRLVDVYDP-KLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRN 291
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
G +IL+ATDVAARG+DV +V+ V L + E ++ +I R G++
Sbjct: 292 GTIDILVATDVAARGIDVDDVECVFNYDLPQDE-EYYVHRIGRTGRA 337
>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 718
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 207/342 (60%), Gaps = 16/342 (4%)
Query: 81 QSAVD-DYVAYDDSSKDEGLDIS--KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
QSA D D A ++S + D+S KL + DI+ A+ + G PIQ + + GR
Sbjct: 89 QSADDEDARAAENSEGTDSTDLSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGR 148
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +PI+ +I K N R+P LVLAPTRELA QV F E A
Sbjct: 149 DVVGLAQTGTGKTAAFALPIIARIDKSN------RSPQALVLAPTRELALQVADAFQEFA 202
Query: 198 P---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
++ + +YGG Q+ L G +VGTPGRVID +K+ +L++S + ++VLDEA
Sbjct: 203 DHVGGINVLPIYGGQAYGIQLSGLRRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEA 262
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML++GF EDVE ILE P +Q +FSATMP IR L+ +YL +P V + ++ +
Sbjct: 263 DEMLNMGFQEDVERILEDTPDKKQVALFSATMPNAIRRLSQQYLDDPYEVTVKAET--RT 320
Query: 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPL 373
IS + + K + +++ E + I+F +TK + + LA + A+ ++ + +
Sbjct: 321 NTNISQRYLNVAHRNKLDALTRIL-EVTEFEAMIIFVRTKYETEELAEKLRARGFSAQAI 379
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+GDI+Q QRERT+ RDGR +IL+ATDVAARGLDV + V
Sbjct: 380 NGDIAQQQRERTVDQLRDGRLDILVATDVAARGLDVDRISHV 421
>gi|440731079|ref|ZP_20911124.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
gi|440375088|gb|ELQ11802.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
Length = 653
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/319 (42%), Positives = 192/319 (60%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +PIL +
Sbjct: 11 FADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSR 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ FN+ R P LVLAPTRELA QV + FH A P + VYGG P Q+ A
Sbjct: 71 L-DFNQ-----RKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID ++R L+LSE++ +VLDEAD+ML +GF +DVE +L++LP +R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLERGTLDLSELRTLVLDEADEMLRMGFIDDVEAVLKKLPASR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q +FSATMP I+ + YL +P V ++ A+ Y + +++ ++
Sbjct: 185 QVALFSATMPTAIKRIAQTYLNDPAEV-IIASKTTTSANIRQRYWAVSGLHKLDALT--R 241
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
I E IVF +TK D LA + A+ ++GDI QSQRER + +DG+ +I
Sbjct: 242 ILEVEPFDAMIVFARTKAATDELAQKLQARGLAAAAINGDIQQSQRERVIQQLKDGKLDI 301
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLDV + V
Sbjct: 302 LVATDVAARGLDVERISHV 320
>gi|126698341|ref|YP_001087238.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-66c26]
gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
107932]
gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-63q42]
gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
43255]
gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-76w55]
gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-97b34]
gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-37x79]
gi|260682458|ref|YP_003213743.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260686057|ref|YP_003217190.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-32g58]
gi|384360039|ref|YP_006197891.1| putative ATP-dependent RNA helicase [Clostridium difficile BI1]
gi|423082109|ref|ZP_17070704.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|423085713|ref|ZP_17074155.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|423090412|ref|ZP_17078711.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|357549359|gb|EHJ31206.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|357549630|gb|EHJ31476.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|357556521|gb|EHJ38116.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
Length = 537
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 205/347 (59%), Gaps = 17/347 (4%)
Query: 99 LDISKLD---ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++I+K + IS+ I A+A G + PIQ + + G+D+IG+A+TGTGKT AF I
Sbjct: 1 MNITKFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSI 60
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPIS 212
PIL+ I N R+ +VL PTRELA QV E + A + T+ +YGG PI
Sbjct: 61 PILETIDPNN------RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPID 114
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+++L GV V+GTPGR ID I R L + V+ ++LDEAD+ML +GF ED+E+IL +
Sbjct: 115 RQIKSLKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSK 174
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P+ RQ+ FSATMP I LT +Y K+P + +V + Y I T K
Sbjct: 175 IPEERQTTFFSATMPRGILELTKRYQKDPEHIKVV--RKELTVSNTKQYYIETRSSNKLE 232
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
++ +L+ + +VF TKR AD L + A+ Y + LHGD+ Q+QR+ + FR+
Sbjct: 233 VLCRLVDVYDP-KLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRN 291
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
G +IL+ATDVAARG+DV +V+ V L + E ++ +I R G++
Sbjct: 292 GTIDILVATDVAARGIDVDDVECVFNYDLPQDE-EYYVHRIGRTGRA 337
>gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
Length = 565
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 200/329 (60%), Gaps = 16/329 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + +QGRD+IG A+TGTGKT AFG+P+++
Sbjct: 24 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIGLAQTGTGKTAAFGLPLIE 83
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
K++ +E+ R L+LAPTREL Q+ K+F +P L V GG I+ Q
Sbjct: 84 KLLA-DERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSP-LRINVVVGGVSINKQQL 141
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+
Sbjct: 142 QLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 201
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++
Sbjct: 202 RQTMLFSATMPKAIADLAGEYLVDPVKVEVT--PPGKAADKVEQYVHFVAGKNDKTELLR 259
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 260 KSLTENPD-GRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSI 318
Query: 395 NILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 319 KTLIATDVAARGIDIPAVSHVYNYDLPEV 347
>gi|397653450|ref|YP_006494133.1| hypothetical protein CULC0102_0697 [Corynebacterium ulcerans 0102]
gi|393402406|dbj|BAM26898.1| hypothetical protein CULC0102_0697 [Corynebacterium ulcerans 0102]
Length = 441
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 190/315 (60%), Gaps = 4/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IG+ARTG GKTL FG+P+LD+
Sbjct: 10 FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA+QV ++ +A + VYGG P Q+ L
Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGGRPYEEQIHVL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
D GVD VVGTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q
Sbjct: 130 DKGVDVVVGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEKLLGALTHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 190 TLLFSATMPGPVLTLARTFMLRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARAL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
H + GK I+FT+TKR A LA +A + + +HGD+ Q+ RE +LS FRD R +IL
Sbjct: 250 QAHER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLSMFRDSRVDIL 308
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARGLD+ +V
Sbjct: 309 VATDVAARGLDIDDV 323
>gi|430747243|ref|YP_007206372.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430018963|gb|AGA30677.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 466
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/364 (39%), Positives = 210/364 (57%), Gaps = 14/364 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S+ + AL R G + PIQ+A++ A+ GRD +G A TGTGKT AF +PIL+K+ +
Sbjct: 20 LGVSELTLKALDRAGFKEPSPIQQAMIAQAIAGRDCLGNAPTGTGKTAAFLVPILEKVDE 79
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
+ R L+LAPTREL Q+ +EF + + + V GG PI Q R L G
Sbjct: 80 ND------RRVQALILAPTRELVIQISREFEKLSYGRRVRGVAVVGGEPILRQQRMLGAG 133
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VV TPGR++DL+ R+A+ L +VQ VVLDEADQML +GF VE IL+ +P+ RQ+++
Sbjct: 134 CQVVVATPGRLMDLMARHAIRLDKVQVVVLDEADQMLDIGFRPAVETILKSVPKTRQTLL 193
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
SATMPP +R L YL NP+ V L+ + + I + + K ++ +L+
Sbjct: 194 LSATMPPEVRDLAQTYLVNPVDVRLIREDEDATIPAIRQLYLMVAAERKFELLIKLLRRE 253
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
A + IVF +TKR ADR+ + ++ + +HG++SQ+QR R L FR GR IL+AT
Sbjct: 254 A-APRAIVFCRTKRGADRVGMLLRSEGLLADTMHGNLSQAQRNRVLQGFRSGRLTILVAT 312
Query: 401 DVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKSRVLSEMLDADL-LSSQGSPLKE 459
DV RG+DV V V L ++ +I R G R+ S+ + L L QG L +
Sbjct: 313 DVVGRGIDVRGVSHVINFDLPEDPTHYVH-RIGRTG--RMGSDGVAFSLVLPDQGKLLDQ 369
Query: 460 VETC 463
+E C
Sbjct: 370 IERC 373
>gi|337290208|ref|YP_004629229.1| hypothetical protein CULC22_00594 [Corynebacterium ulcerans
BR-AD22]
gi|334698514|gb|AEG83310.1| hypothetical protein CULC22_00594 [Corynebacterium ulcerans
BR-AD22]
Length = 441
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 190/315 (60%), Gaps = 4/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IG+ARTG GKTL FG+P+LD+
Sbjct: 10 FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA+QV ++ +A + VYGG P Q+ L
Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGGRPYEEQIHVL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
D GVD VVGTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q
Sbjct: 130 DKGVDVVVGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEKLLGALTHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 190 TLLFSATMPGPVLTLARTFMLRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARAL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
H + GK I+FT+TKR A LA +A + + +HGD+ Q+ RE +LS FRD R +IL
Sbjct: 250 QAHER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLSMFRDSRVDIL 308
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARGLD+ +V
Sbjct: 309 VATDVAARGLDIDDV 323
>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|420263005|ref|ZP_14765645.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
12755]
gi|394769969|gb|EJF49787.1| cold-shock DEAD box protein A [Enterococcus sp. C1]
Length = 508
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ L++S +++ ++ R G + PIQ+A + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E + + VYGG I Q+R
Sbjct: 61 EKIDPANHQLQ------GLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDV 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+++ K++K P V + + + AD I Y + + YEK ++ +
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKEPEHVQI--KAKEMTADLIDQYYVRSKDYEKFDVMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G+ +
Sbjct: 233 LLDVQSP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|374704913|ref|ZP_09711783.1| DEAD-box ATP dependent DNA helicase [Pseudomonas sp. S9]
Length = 558
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 200/316 (63%), Gaps = 13/316 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L ++Q+I+AAL G + PIQ+ + + G DMIG+A+TGTGKT AF +P+L +
Sbjct: 8 FAALGLTQNILAALTAVGYEEPSPIQQQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSR 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F + P L+ + VYGG P+ Q++A
Sbjct: 68 IDPAK------REPQALILAPTRELALQVATAFETYSKQMPGLNVVAVYGGAPMGPQLKA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G +V TPGR++D ++R+ LS +Q +VLDEAD+ML +GF +D+EVI + +P++R
Sbjct: 122 IRQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEVIFQAMPESR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
QS++FSAT+P IR++ K+LK+P + + + Q +A I + +K + + +L
Sbjct: 182 QSVLFSATLPHSIRAIAEKHLKSPQHIKIAAKT-QTVAR-IEQAHLLIHADQKVNAVLRL 239
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E + I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 240 L-EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNV 412
++ATDVAARGLDVP +
Sbjct: 299 VVATDVAARGLDVPRI 314
>gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 562
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 213/372 (57%), Gaps = 14/372 (3%)
Query: 92 DSSKDEGLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
D+S +I+ D + +I++ALA GI FPIQ L A+ G D+IG+A+TGTGK
Sbjct: 6 DTSHPHAPEITFADFPVHPEIISALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGK 65
Query: 150 TLAFGIPILDKIIKFNEKH----GRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTI 203
TL FG+P+L+ ++ + R P L +APTRELA QV + + + +
Sbjct: 66 TLGFGVPMLNSVVAPGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRHRGIRVL 125
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
VYGG Q+ AL GV+ VVGTPGR+IDL K+ L+LS+ + VVLDEAD+ML +GF
Sbjct: 126 TVYGGRAYEPQVDALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVVLDEADEMLDLGFL 185
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK--LADGISLY 321
DVE ++ P +RQ+M+FSATMP I +L +Y+ P + +GD ++ + +
Sbjct: 186 PDVETLMSLTPASRQTMLFSATMPGAIVTLARRYMTQPTHIRAMGDENENAHTVKAVEQF 245
Query: 322 SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQS 380
+K ++ +++ + G I+F++TKR A ++A + + + +HGD+ Q
Sbjct: 246 VYRAHALDKVEMLSRMLQAKDR-GLTIIFSRTKRTAAKVADELGERGFAAAAIHGDLGQG 304
Query: 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKS 438
RE+ L AFR+G+ ++L+ATDVAARG+DV NV V E +L + +R G +
Sbjct: 305 AREQALRAFRNGKVDVLVATDVAARGIDVDNVTHVINFQCPEDEKTYLHRIGRTARAGNT 364
Query: 439 RVLSEMLDADLL 450
V +D D L
Sbjct: 365 GVAVTFVDWDDL 376
>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
Length = 607
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/314 (44%), Positives = 197/314 (62%), Gaps = 13/314 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
S+ ++ LA +G S+ PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 64 FSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL---- 119
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
+ G+ + P LVLAPTRELA QV + F + P L + VYGGT Q+ AL GV
Sbjct: 120 -ESGQ-KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGV 177
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGRV+D +++ L+ S ++ +VLDEAD+ML +GF +DVE IL++LP+ RQ ++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLF 237
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMPP IR L+ +YLK+P V + DQ+ I SI M K + +++
Sbjct: 238 SATMPPEIRRLSKRYLKDPAEV-TIRTKDQE-GKRIRQRSITVPMPHKLEALQRVLDACG 295
Query: 343 KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401
G I+F +TK +A + A + L+GD+ Q+QRERT+ R G +IL+ATD
Sbjct: 296 SEG-VIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATD 354
Query: 402 VAARGLDVPNVDLV 415
VAARGLDV + LV
Sbjct: 355 VAARGLDVERIGLV 368
>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|406579294|ref|ZP_11054526.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|406581588|ref|ZP_11056725.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|406584027|ref|ZP_11059065.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|406589825|ref|ZP_11064245.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410938072|ref|ZP_11369930.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|424789110|ref|ZP_18215819.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|424953765|ref|ZP_18368708.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|424962400|ref|ZP_18376756.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|424963599|ref|ZP_18377803.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|424970725|ref|ZP_18384213.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|424978089|ref|ZP_18391038.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|425038208|ref|ZP_18442830.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|425058609|ref|ZP_18461987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|425060636|ref|ZP_18463922.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|427397059|ref|ZP_18889685.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430820898|ref|ZP_19439518.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430823396|ref|ZP_19441967.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430826317|ref|ZP_19444503.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430828899|ref|ZP_19447010.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430834757|ref|ZP_19452759.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430836494|ref|ZP_19454473.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430839412|ref|ZP_19457353.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430843175|ref|ZP_19461076.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430850821|ref|ZP_19468578.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430853175|ref|ZP_19470905.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430858894|ref|ZP_19476513.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430861435|ref|ZP_19478942.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430866428|ref|ZP_19481705.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430892938|ref|ZP_19484559.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430952632|ref|ZP_19486438.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|431000766|ref|ZP_19488247.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|431234137|ref|ZP_19502906.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|431256501|ref|ZP_19504856.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|431303424|ref|ZP_19508271.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|431380394|ref|ZP_19510775.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|431441111|ref|ZP_19513326.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|431506774|ref|ZP_19515600.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|431725207|ref|ZP_19525416.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|431744090|ref|ZP_19532962.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|431747114|ref|ZP_19535916.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|431760196|ref|ZP_19548798.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|431765027|ref|ZP_19553551.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|402922578|gb|EJX42943.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|402938304|gb|EJX57320.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|402940682|gb|EJX59477.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|402948694|gb|EJX66809.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|402960765|gb|EJX77866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|402963120|gb|EJX80012.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|403019904|gb|EJY32478.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|403038013|gb|EJY49253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|403042418|gb|EJY53373.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|404455599|gb|EKA02443.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|404459354|gb|EKA05720.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|404464924|gb|EKA10437.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|404470265|gb|EKA14916.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410733711|gb|EKQ75634.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|425722385|gb|EKU85280.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430439035|gb|ELA49418.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430442109|gb|ELA52157.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430445197|gb|ELA54971.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430482561|gb|ELA59676.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430484826|gb|ELA61773.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430488294|gb|ELA64976.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430490870|gb|ELA67366.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430497924|gb|ELA73941.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430535180|gb|ELA75603.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430540997|gb|ELA81174.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430544740|gb|ELA84762.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430549900|gb|ELA89710.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430551656|gb|ELA91407.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430555404|gb|ELA94942.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430557231|gb|ELA96699.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|430562425|gb|ELB01657.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|430573163|gb|ELB11993.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|430577603|gb|ELB16190.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|430580065|gb|ELB18545.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|430582262|gb|ELB20689.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|430586467|gb|ELB24719.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|430587161|gb|ELB25394.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|430595854|gb|ELB33732.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|430605718|gb|ELB43100.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430607222|gb|ELB44549.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|430624005|gb|ELB60656.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|430629510|gb|ELB65910.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
Length = 503
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 197/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI +E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRHELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|399055613|ref|ZP_10743308.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398046822|gb|EJL39406.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 529
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 194/319 (60%), Gaps = 15/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++K
Sbjct: 4 FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLAGGDLIGQAQTGTGKTAAFGIPLVEK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
I N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 64 ITPANRVQ-------AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRAL 116
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P+ RQ
Sbjct: 117 RQGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIITHMPEERQ 176
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQL 337
+++FSATMPP I+ L +Y+K P T+ + ++ A I +Y + S+ L
Sbjct: 177 TLLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAPLIEQVYYKVFDRNKVESLCRIL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+E + G I+F +TKR D L+ + ++ Y + LHGD+SQ+QR++ ++AFR+G
Sbjct: 235 DSEDVELG--IIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEF 292
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARG+DV NV V
Sbjct: 293 LIATDVAARGIDVGNVSHV 311
>gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio
proteoclasticus B316]
gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus
B316]
Length = 711
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/359 (38%), Positives = 217/359 (60%), Gaps = 32/359 (8%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V YD+S GLD + I+ A++ G + PIQKA + +QG+D+IG+A+TGT
Sbjct: 59 VRYDES----GLD-------ERIIRAVSEMGFEYMSPIQKAAIPVMIQGKDIIGQAQTGT 107
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTIC 204
GKT AFGIP+L ++ N KH + +VL PTRELA Q ++F + + +
Sbjct: 108 GKTAAFGIPLLHQVDPAN-KHLQ-----AVVLCPTRELAMQAADDIRDFAKYMFGIKVLA 161
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG IS Q++AL GV VVGTPGRV+D ++R+ + + +V+ +VLDEAD+ML +GF E
Sbjct: 162 VYGGQDISRQIKALSNGVQIVVGTPGRVMDHMRRHTMKMKDVKVLVLDEADEMLDMGFRE 221
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
D+E IL+ +P RQ+ +FSATMP I +T Y K+ + + I++ +I
Sbjct: 222 DIETILQGMPMERQTALFSATMPEAILKITKTYQKSDAEYIKMTPKE------ITVAAIE 275
Query: 325 TSMYEKPSIIGQ----LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQ 379
+ Y P + + + ++ + ++F TKR D+LA ++ K Y + LHGD+SQ
Sbjct: 276 QAYYRVPQKLKEDVLVRLMDYYNPARSLIFCNTKRMVDQLAESLKGKGYLADGLHGDLSQ 335
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+QR+ ++ FR+GR NILIATDVAARG+DV V+ V + +++++ +I R G++
Sbjct: 336 NQRDTVMNLFRNGRINILIATDVAARGIDVSGVEAVFNYDIP-EDIEYYVHRIGRTGRA 393
>gi|354614919|ref|ZP_09032743.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353220726|gb|EHB85140.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 576
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 181/301 (60%), Gaps = 9/301 (2%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
ALA G S+ PIQ+A + P + GRD++G+A TGTGKT AF +P+L + RG
Sbjct: 30 ALAELGYSEPTPIQRAAVPPLLAGRDLVGQAATGTGKTAAFALPLLHHLADGE----RGT 85
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPG 230
P LVL PTRELA QV F L + VYGG P+ Q+RAL+ G D VV TPG
Sbjct: 86 TPRVLVLVPTRELAAQVCAAFDGYGRHLGVRVVPVYGGQPMGRQLRALEQGADVVVATPG 145
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290
R +D + R +L L + VVLDEAD+ML +GFAED++ IL+R P RQ+M+FSATMPP I
Sbjct: 146 RALDHLARGSLRLDGLDAVVLDEADEMLDMGFAEDIDAILQRTPDERQTMLFSATMPPRI 205
Query: 291 RSLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
L +YL +P ++L +S A I + KP+ +G+++ A +V
Sbjct: 206 AGLVRRYLTDPERIELSRAESVSGDAAMIRQTAYLVPRGYKPAALGRVLDLEAPKA-AVV 264
Query: 350 FTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408
F +T+ + DRL M ++Y E LHG + Q QR+R + R G ++++ATDVAARGLD
Sbjct: 265 FCRTREEVDRLTETMNGRNYRAEALHGGMDQQQRDRVVGRLRAGTADLVVATDVAARGLD 324
Query: 409 V 409
+
Sbjct: 325 I 325
>gi|315503693|ref|YP_004082580.1| dead/deah box helicase domain-containing protein [Micromonospora
sp. L5]
gi|315410312|gb|ADU08429.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
Length = 553
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 197/319 (61%), Gaps = 6/319 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L Q+ V ALA GI++ F IQ+ L A++G D+IG+A TGTGKTL FGIP
Sbjct: 19 EAPTFAALGARQETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIP 78
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+L+++ F G P LV+ PTREL QV K+ + + + + +YGG Q
Sbjct: 79 LLERV--FAPSEGSDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQ 136
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GV+ +VGTPGR++DL K+ L L V+ +VLDEAD+ML +GF +DVE IL LP
Sbjct: 137 IEALRKGVEILVGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLP 196
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
++RQ+M+FSATMP I +L+ ++L+ P+T+ ++ + + + T K I+
Sbjct: 197 EDRQTMLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSLNKVEIV 256
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+++ + G ++FT+TKR ADR+A + + + +HGD+ Q RER L AFR G+
Sbjct: 257 ARILQAEGR-GLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGK 315
Query: 394 FNILIATDVAARGLDVPNV 412
+ L+ATDVAARG+DV V
Sbjct: 316 IDTLVATDVAARGIDVTGV 334
>gi|302870034|ref|YP_003838671.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302572893|gb|ADL49095.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
ATCC 27029]
Length = 553
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 197/319 (61%), Gaps = 6/319 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L Q+ V ALA GI++ F IQ+ L A++G D+IG+A TGTGKTL FGIP
Sbjct: 19 EAPTFAALGARQETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIP 78
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+L+++ F G P LV+ PTREL QV K+ + + + + +YGG Q
Sbjct: 79 LLERV--FAPSEGSDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQ 136
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GV+ +VGTPGR++DL K+ L L V+ +VLDEAD+ML +GF +DVE IL LP
Sbjct: 137 IEALRKGVEILVGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLP 196
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
++RQ+M+FSATMP I +L+ ++L+ P+T+ ++ + + + T K I+
Sbjct: 197 EDRQTMLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSLNKVEIV 256
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+++ + G ++FT+TKR ADR+A + + + +HGD+ Q RER L AFR G+
Sbjct: 257 ARILQAEGR-GLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGK 315
Query: 394 FNILIATDVAARGLDVPNV 412
+ L+ATDVAARG+DV V
Sbjct: 316 IDTLVATDVAARGIDVTGV 334
>gi|431208676|ref|ZP_19500889.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|430570682|gb|ELB09622.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
Length = 503
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 197/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI +E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRHELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|343087345|ref|YP_004776640.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342355879|gb|AEL28409.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 565
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 193/318 (60%), Gaps = 13/318 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L +S++I+ A+ G ++ PIQ + +QG D+IG+A+TGTGKT AFGIPI+D I
Sbjct: 8 SDLGVSEEILRAVEDMGYTQPSPIQAQTIPLLLQGADVIGQAQTGTGKTAAFGIPIIDSI 67
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRAL 218
++K P L+L PTRELA QVE E + + + C+YGG I Q+R+L
Sbjct: 68 DPNSKK------PQALILCPTRELAVQVEGEIVKLTKYNRKISSTCIYGGESIDRQIRSL 121
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGR++D + R L+LS+V +VLDEAD+ML +GF +D+E IL +P RQ
Sbjct: 122 KKGVQIVVGTPGRIMDHMDRRTLDLSQVGIIVLDEADEMLDMGFRDDIEKILSSMPIERQ 181
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
++ FSATMP I LT KY +P + ++ + + IS K +I +LI
Sbjct: 182 TVFFSATMPKPILELTRKYQTDPEIIKVL--RKELTVENISQLYFDVRSGLKTDLISRLI 239
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
H + ++F TKR D + + AK E LHGD+SQ+QR + ++ FR G ++L
Sbjct: 240 NLH-QYKLSVIFCNTKRVTDEVTEELTAKGIPAEALHGDLSQAQRTKVMNKFRKGHCSVL 298
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARG+DV NV+ V
Sbjct: 299 VATDVAARGIDVENVEAV 316
>gi|417677313|ref|ZP_12326720.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|418155567|ref|ZP_12792295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|418157874|ref|ZP_12794590.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|418225966|ref|ZP_12852594.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|353820426|gb|EHE00612.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|353824322|gb|EHE04496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|353881163|gb|EHE60977.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
Length = 524
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
gi|224953734|gb|EEG34943.1| DEAD/DEAH box helicase [Eubacterium hallii DSM 3353]
Length = 529
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 202/346 (58%), Gaps = 14/346 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + ++LDI +I+ A+A G + PIQ + + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ETVKFTELDIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
IL K+ + + P +VL PTRELA QV E + A S+ + +YGG IS
Sbjct: 62 ILQKV------DPKLKKPQAIVLCPTRELAIQVADEIRKLAKYMSSVKILPIYGGQEISK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L GV ++GTPGR++D ++R + + VVLDEAD+ML +GF ED+E IL +
Sbjct: 116 QIRSLKAGVQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILNGV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ+M+FSATMP I L Y +NP + ++ + I+ Y K +
Sbjct: 176 PEERQTMLFSATMPKPIMELARAYQQNPEIIKVI--RKELTVPNITQYYYEVRPKNKSEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ + +VF TK+ D L A + Y E LHGD+ Q+ R+R + FR G
Sbjct: 234 LSRLLDIYDP-KLSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSG 292
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+ +IL+ATDVAARG+DV +VD V L + E ++ +I R G++
Sbjct: 293 KTDILVATDVAARGIDVDDVDAVFNYDLPQDE-EYYVHRIGRTGRA 337
>gi|392429044|ref|YP_006470055.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
gi|419776490|ref|ZP_14302412.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|383845901|gb|EID83301.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|391758190|dbj|BAM23807.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
Length = 514
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 197/322 (61%), Gaps = 16/322 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +K +S +++A + + G + PIQ+ + AM+G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNKFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------NTENPFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ+++FSATMP I+ + K++K+P V + + + + + Y I EK +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKDPTHVKIA--AKELTTELVDQYYIRVKENEKFDTM 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + E +HGD+ Q +R R L F++G
Sbjct: 231 TRLM-DVEQPELSIVFGRTKRRVDELTRGFKLRGFRAEGIHGDLDQGKRLRVLRDFKNGN 289
Query: 394 FNILIATDVAARGLDVPNVDLV 415
++L+ATDVAARGLD+ V V
Sbjct: 290 LDVLVATDVAARGLDISGVTHV 311
>gi|343497470|ref|ZP_08735537.1| cold-shock DEAD-box protein A [Vibrio nigripulchritudo ATCC 27043]
gi|342818317|gb|EGU53184.1| cold-shock DEAD-box protein A [Vibrio nigripulchritudo ATCC 27043]
Length = 621
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 194/322 (60%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S+L ++ I+++L G PIQ A + ++G+D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSELALNDAILSSLEGMGFVSPTPIQAAAIPHLLEGKDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLDLSQ------RKPQAIVLAPTRELAIQVAAEMKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+ P Q ++FSATMPP ++++ ++L+NP +D+ G + D + EK
Sbjct: 176 QAPDTAQRVLFSATMPPMLKNIVERFLRNPEHIDVAGKN--HTVDKVEQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|325919452|ref|ZP_08181477.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
gi|325550072|gb|EGD20901.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
Length = 438
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 201/343 (58%), Gaps = 14/343 (4%)
Query: 94 SKDEGLDISKLDISQDIV----AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
S D + LD+S ++ AALAR G PIQ+ ++P +QGRD+I A+TG+GK
Sbjct: 5 SGDSTMSFDHLDLSPQLLPAFTAALARAGHHTPTPIQQQAIQPMLQGRDLIAMAQTGSGK 64
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL----DTICV 205
TLA+ +P+L + E R LVL PTRELA QVE H+ A L +
Sbjct: 65 TLAYALPLLQQRCLAPETAPRVLG--ALVLVPTRELAAQVEDTLHQLAAHLPRRLKIVTA 122
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
GG+ I+ Q+ AL G D VV TPGR++DL+ NAL LSEV +VLDEAD++L +GF +
Sbjct: 123 TGGSSINPQLLALRGGADIVVATPGRLLDLVDHNALRLSEVATLVLDEADRLLELGFGAE 182
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
++ IL LP RQS++FSAT PP I SL + L++PL + +V D A I +IA
Sbjct: 183 LDRILALLPAQRQSVLFSATFPPGIASLAKRRLRDPLRITIVATPDA--APAIEQRAIAV 240
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRER 384
++ ++ L+ EH +VF ++ A+++A + K+ N +PLHG++SQ +RER
Sbjct: 241 DAGQRTQLLRHLLQEHG-WSHVLVFVASRHTAEKVAEKLTKTGINAQPLHGELSQGRRER 299
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQF 427
TL AF+ +L+ATD+A RG+D+ + V L R V +
Sbjct: 300 TLYAFKQREVQVLVATDLAGRGIDIDALPAVINYDLPRSTVDY 342
>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
gi|169293913|gb|EDS76046.1| DEAD/DEAH box helicase [Clostridium spiroforme DSM 1552]
Length = 531
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/377 (37%), Positives = 222/377 (58%), Gaps = 18/377 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ A+ G SK IQ+ + + G D IG+A+TGTGKTLAFG +L KI
Sbjct: 8 QLGLSEEVLKAIKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAFGSVLLSKIK 67
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDY 220
++ R P ++L+PTRELA Q+ +E + + +CV+GG+ I Q+R++
Sbjct: 68 PIDD-----RFPQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSIKK 122
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGRV+DL++R L V++VVLDEAD+ML++GF ED+E ILE++ RQ++
Sbjct: 123 GVDIVVGTPGRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDARQTI 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI-T 339
+FSATMP I+ + Y+ + + S Q A + + ++ + +LI
Sbjct: 183 LFSATMPAGIKKIAQNYMHDDFK-HVAVLSKQTTATSVKQFYYEVKPKDRFETLCRLIDV 241
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+ K G I+F +TKR D + M +S YN E +HGD++Q+ R TL F+ G N L+
Sbjct: 242 ANIKTG--IIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFLV 299
Query: 399 ATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS-RVLSEMLDADLLS-SQGSP 456
ATDVAARG+DV NV V+ + Q + + + R G++ R E L ++S + S
Sbjct: 300 ATDVAARGIDVENVTH----VINYELPQDIESYVHRIGRTGRADKEGLAYSIISPKEVSF 355
Query: 457 LKEVETCTMTWVAGLGM 473
LK++E T + + + +
Sbjct: 356 LKQIERVTKSTITKVNV 372
>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
Length = 606
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 199/338 (58%), Gaps = 13/338 (3%)
Query: 82 SAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIG 141
S D + S + + S+ ++ L +G + PIQKA M GRD++G
Sbjct: 40 SDADSEATSEGESAESASGFAGFGFSEALLKTLDAKGYKEPSPIQKAAFPELMLGRDLVG 99
Query: 142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---P 198
+A+TGTGKT AF +P+L+++ GR P LVLAPTRELA QV F A P
Sbjct: 100 QAQTGTGKTAAFALPLLERL------DGRSNTPRVLVLAPTRELAMQVADSFKAYAAGHP 153
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L+ + +YGG+ Q+ AL GVD VVGTPGRV+D +++ L+ + ++ +VLDEAD+ML
Sbjct: 154 HLNVLAIYGGSDFRSQIHALKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEML 213
Query: 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
+GF +DVE IL++LP+ RQ ++FSATMP IR L+ +YL+ P + + + + A I
Sbjct: 214 RMGFIDDVEWILDQLPEERQVVLFSATMPNEIRRLSKRYLREPAEITI--KTKDREAKRI 271
Query: 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDI 377
SI K + +++ E G I+F +TK +A ++ A ++ L+GD+
Sbjct: 272 RQRSITLQNAHKIEALNRVL-EAVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDV 330
Query: 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
Q+QRERT+ R G NIL+ATDVAARGLDV + LV
Sbjct: 331 PQNQRERTVDRLRKGTVNILVATDVAARGLDVDRIGLV 368
>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
Length = 607
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 200/329 (60%), Gaps = 14/329 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
++S+K+E + S+ ++ L +G + PIQKA M GRD++G+A+TGTGKT
Sbjct: 50 EESTKEES-GFAGFGFSEALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKT 108
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYG 207
AF +P+L+++ GR P LVLAPTRELA QV F A P L+ + +YG
Sbjct: 109 AAFALPLLERL------EGRSSKPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYG 162
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ Q+ L GVD VVGTPGRV+D +++ L+ + ++ +VLDEAD+ML +GF +DVE
Sbjct: 163 GSDFRSQIHTLKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVE 222
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL++LP+ RQ ++FSATMP IR L+ +YL+ P + + + + A I SI
Sbjct: 223 WILDQLPEERQVVLFSATMPNEIRRLSKRYLQEPAEITI--KTKDREAKRIRQRSITMQN 280
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
K + +++ E G I+F +TK +A ++ A ++ L+GD+ Q+QRERT+
Sbjct: 281 SHKIEALNRVL-EAVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTV 339
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLV 415
R G NIL+ATDVAARGLDV + LV
Sbjct: 340 DRLRKGTVNILVATDVAARGLDVDRIGLV 368
>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
Length = 647
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 193/321 (60%), Gaps = 13/321 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
P+L+K+ R P +VLAPTRELA QV K ++ L + +YGG I
Sbjct: 63 PLLNKLDLGQ------RKPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++S+ ++L++P T+D+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKSIVERFLRDPETIDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 294 GVIDILVATDVVARGLDVPRI 314
>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 523
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 202/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L +S+D++ A+ G + PIQ + + G+D+IG+A+TGTGKT AF +PIL
Sbjct: 1 MKFKELGLSEDLLKAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI K NE N LV++PTRELA Q ++E ++ + VYGG I Q++
Sbjct: 61 EKIDKSNE------NVQALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+L VVGTPGR++D I+R+ L L VQ +VLDEAD+ML++GF +D+E I+++LP+
Sbjct: 115 SLKNHPQVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMPP I+ + +++K+P V + + + D I + + + +EK ++ +
Sbjct: 175 RQTMLFSATMPPEIKRVGVQFMKDPKHVKI--KAKELTTDLIDQFYVRSRDFEKFDVMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+ IVFT+TKR D +A + A+ YN +HGD++Q +R + ++ FR G+ +
Sbjct: 233 FFDVQSP-DLTIVFTRTKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARG+D+ +V
Sbjct: 292 ILVATDVAARGIDINDV 308
>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|383327538|ref|YP_005353422.1| DEAD/DEAH box helicase [Enterococcus faecium Aus0004]
gi|389867363|ref|YP_006374786.1| DEAD/DEAH box helicase [Enterococcus faecium DO]
gi|415892439|ref|ZP_11549927.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|416131873|ref|ZP_11597781.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|424795449|ref|ZP_18221304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|424819380|ref|ZP_18244487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|424856321|ref|ZP_18280560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|424949231|ref|ZP_18364921.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|424956289|ref|ZP_18371077.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|424967919|ref|ZP_18381589.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|424976047|ref|ZP_18389165.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|424981969|ref|ZP_18394659.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|424984734|ref|ZP_18397253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|424987723|ref|ZP_18400084.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|424990961|ref|ZP_18403147.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|424995504|ref|ZP_18407380.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|424997413|ref|ZP_18409175.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|425000503|ref|ZP_18412062.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|425003235|ref|ZP_18414612.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|425006604|ref|ZP_18417774.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|425011167|ref|ZP_18422079.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|425013771|ref|ZP_18424487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|425017560|ref|ZP_18428061.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|425022464|ref|ZP_18432645.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|425030171|ref|ZP_18435374.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|425033448|ref|ZP_18438416.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|425034930|ref|ZP_18439786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|425040930|ref|ZP_18445364.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|425044373|ref|ZP_18448536.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|425047569|ref|ZP_18451517.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|425053412|ref|ZP_18456957.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|430831942|ref|ZP_19449990.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430847435|ref|ZP_19465272.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430855628|ref|ZP_19473336.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|431544298|ref|ZP_19518594.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|431749300|ref|ZP_19538042.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|431755816|ref|ZP_19544461.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|431767952|ref|ZP_19556395.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|431769544|ref|ZP_19557952.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|431773402|ref|ZP_19561727.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|431776500|ref|ZP_19564761.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|431779582|ref|ZP_19567775.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|431782613|ref|ZP_19570746.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|431784440|ref|ZP_19572479.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|364093335|gb|EHM35615.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|364093511|gb|EHM35776.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|378937232|gb|AFC62304.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium Aus0004]
gi|388532612|gb|AFK57804.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium DO]
gi|402924387|gb|EJX44599.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|402926241|gb|EJX46293.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|402930201|gb|EJX49880.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|402934931|gb|EJX54225.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|402946393|gb|EJX64674.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|402952005|gb|EJX69866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|402953338|gb|EJX71063.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|402962168|gb|EJX79137.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|402967955|gb|EJX84466.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|402973745|gb|EJX89845.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|402977156|gb|EJX92995.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|402978215|gb|EJX93973.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|402986313|gb|EJY01444.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|402988977|gb|EJY03941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|402992431|gb|EJY07139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|402996952|gb|EJY11308.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|402997720|gb|EJY12029.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|403000335|gb|EJY14462.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|403002697|gb|EJY16644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|403004081|gb|EJY17911.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|403004113|gb|EJY17941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|403009946|gb|EJY23359.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|403018997|gb|EJY31633.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|403027273|gb|EJY39167.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|403029941|gb|EJY41662.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|403030418|gb|EJY42102.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|403033364|gb|EJY44870.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|430480583|gb|ELA57757.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430537055|gb|ELA77408.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430546683|gb|ELA86626.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|430592410|gb|ELB30425.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|430611728|gb|ELB48804.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|430616431|gb|ELB53345.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|430630040|gb|ELB66417.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|430636649|gb|ELB72713.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|430636858|gb|ELB72912.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|430640819|gb|ELB76647.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|430641683|gb|ELB77478.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|430647250|gb|ELB82698.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|430649535|gb|ELB84911.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
Length = 503
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 197/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI +E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRHELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|424869804|ref|ZP_18293485.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
gi|402935190|gb|EJX54460.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
Length = 501
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 197/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI +E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRHELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|447911698|ref|YP_007393110.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
gi|445187407|gb|AGE29049.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
Length = 503
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 196/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRQELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|433545971|ref|ZP_20502309.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432182587|gb|ELK40150.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 549
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 194/319 (60%), Gaps = 15/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++K
Sbjct: 24 FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLAGGDLIGQAQTGTGKTAAFGIPLVEK 83
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
I N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 84 ITPANRVQ-------AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRAL 136
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P+ RQ
Sbjct: 137 RQGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIITHMPEERQ 196
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQL 337
+++FSATMPP I+ L +Y+K P T+ + ++ A I +Y + S+ L
Sbjct: 197 TLLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAPLIEQVYYKVFDRNKVESLCRIL 254
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+E + G I+F +TKR D L+ + ++ Y + LHGD+SQ+QR++ ++AFR+G
Sbjct: 255 DSEDVELG--IIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEF 312
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARG+DV NV V
Sbjct: 313 LIATDVAARGIDVGNVSHV 331
>gi|330470231|ref|YP_004407974.1| dead/deah box helicase domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328813202|gb|AEB47374.1| dead/deah box helicase domain protein [Verrucosispora maris
AB-18-032]
Length = 563
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 201/324 (62%), Gaps = 5/324 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+ E ++L + V ALA GI++ F IQ+ L A++G D+IG+A TGTGKTL FG
Sbjct: 21 RPEAPTFAELGARAETVEALAAAGITRAFAIQEYALPIALRGADLIGQAPTGTGKTLGFG 80
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPIS 212
+P+L+++ E G G P LV+ PTREL QV K+ + + + + +YGG
Sbjct: 81 VPLLERVFAPGEGSGDGL-PQALVVVPTRELGIQVAKDIAAAGRTRGVRVLPIYGGVAYE 139
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GV+ +VGTPGR++DL K+ L L+ ++ +VLDEAD+ML +GF +DVE IL
Sbjct: 140 PQVEALRKGVEILVGTPGRLLDLAKQKHLRLNGIRALVLDEADRMLDLGFLDDVERILAM 199
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP++RQ+M+FSATMP I +L+ ++L++P+T+ ++ + T K
Sbjct: 200 LPEDRQTMLFSATMPDPIVTLSRRFLRHPITIHAGHTAETGPSPQTEQLVYRTHSMNKVE 259
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
I+ +++ ++ G ++FT+TKR ADR+A + + + +HGD+ Q RER L AFR
Sbjct: 260 IVARILQAESR-GLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRA 318
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+ + L+ATDVAARG+DV V V
Sbjct: 319 GKIDTLVATDVAARGIDVTGVTHV 342
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 194/324 (59%), Gaps = 10/324 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +++S ++ A+ G PIQ + ++G+D+IG+A+TGTGKT AFGIP++
Sbjct: 22 LKFTDMNLSDEVKRAVEVMGFESPSPIQAEAIPHLLEGKDVIGQAQTGTGKTAAFGIPLI 81
Query: 159 DKIIKFNEKHGRGRN---PLCLVLAPTRELAKQVEKEFHESAPSLDTI---CVYGGTPIS 212
++IIK NE RN P ++L PTRELA QV E + A I VYGG I
Sbjct: 82 ERIIKANENSEFDRNSRLPKGIILCPTRELAVQVAGELEKLAKFRKDIFVTAVYGGESIE 141
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+R L GV VVGTPGR ID IKR L L E+ ++LDEAD+ML++GF ED+E+IL++
Sbjct: 142 KQIRNLRRGVQIVVGTPGRTIDHIKRGTLKLEEITNIILDEADEMLNMGFKEDIELILQQ 201
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+ Q+++FSATMP I + KY +P V ++ S + +D I + + K
Sbjct: 202 ITTEHQTVLFSATMPKPILQIAKKYQNSPEIVKVI--SKELTSDNIEQSFLPINPNYKTD 259
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
++ +L+ + ++F TK+ D +A + K Y E LHGD++Q QR ++ FR
Sbjct: 260 VLVRLLA-YNGWESMLIFCNTKQRTDEVAETLIQKGYAAEALHGDLAQHQRNLVMNKFRH 318
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
GR IL+ATDVAARG+DV NV+ V
Sbjct: 319 GRVQILVATDVAARGIDVDNVEAV 342
>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
Length = 503
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 197/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI +E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRHELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++KNP V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKNPHHVKI--KAKEVTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|352093689|ref|ZP_08954860.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
gi|351680029|gb|EHA63161.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
Length = 602
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 196/319 (61%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ S+ ++ LA +G + PIQK + M GRD++G+A+TGTGKT AF +P+L++
Sbjct: 50 FSEFGFSEALLKTLADKGYKEPSPIQKEAIPELMLGRDLVGQAQTGTGKTAAFALPLLER 109
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ G P LVLAPTRELA QV + F + P L+ + +YGG+ Q+ A
Sbjct: 110 L------QGDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINA 163
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGRV+D +++ LN S ++ +VLDEAD+ML +GF +DVE ILE+LP+ R
Sbjct: 164 LRRGVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPEER 223
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q ++FSATMP IR L+ +YL+ P + + + +K A I I K + ++
Sbjct: 224 QVVLFSATMPNEIRRLSKRYLREPAEITI--KTKEKEARRIRHRCITMQNSHKLEALNRV 281
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E G I+F +TK +A ++ A ++ L+GD+ Q+QRERT+ R G NI
Sbjct: 282 L-EAVTGEGVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNI 340
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLDV + LV
Sbjct: 341 LVATDVAARGLDVDRIGLV 359
>gi|415752805|ref|ZP_11479787.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
gi|381308452|gb|EIC49295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
Length = 511
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 203/317 (64%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEATIQ-----ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|418134760|ref|ZP_12771617.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
gi|353901997|gb|EHE77527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
Length = 430
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 203/317 (64%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEATIQ-----ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|238061200|ref|ZP_04605909.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein [Micromonospora sp. ATCC 39149]
gi|237883011|gb|EEP71839.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein [Micromonospora sp. ATCC 39149]
Length = 557
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 207/365 (56%), Gaps = 15/365 (4%)
Query: 63 HAISRPLDFKSSIAWQHAQS---------AVDDYVAYDDSSKDEGLDISKLDISQDIVAA 113
H RP D H Q D +A + E ++L + V A
Sbjct: 6 HYRPRPEDLTGRTTRGHPQIHMSEQIFDLTADQELAPTAPVRPEAPTFAELGARPETVEA 65
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
LA GI++ F IQ+ + A++G DMIG+A TGTGKTL FG+P+L+++ F G
Sbjct: 66 LAEAGITRAFAIQEYAIPIALRGVDMIGQAPTGTGKTLGFGVPLLERV--FAPAEGGDGV 123
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
P LV+ PTREL QV K+ + + + + +YGG Q+ AL GV+ +VGTPGR
Sbjct: 124 PQALVVVPTRELGIQVAKDLAAAGRTRGVRVLPIYGGVAYEPQIDALRKGVEILVGTPGR 183
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
++DL K+ L L V+ +VLDEAD+ML +GF +DVE IL LP++RQ+M+FSATMP I
Sbjct: 184 LMDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTMLFSATMPDPIV 243
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFT 351
+L+ ++L+ P+T+ ++ + T K I+ +++ + G ++FT
Sbjct: 244 TLSRRFLRRPMTIHAGHTAETGPSPQTEQLVYRTHSMNKIEIVARILQAEGR-GLTMIFT 302
Query: 352 QTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410
+TKR ADR+A + + + +HGD+ Q RER L AFR G+ +IL+ATDVAARGLDV
Sbjct: 303 RTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDILVATDVAARGLDVS 362
Query: 411 NVDLV 415
V V
Sbjct: 363 GVTHV 367
>gi|339503881|ref|YP_004691301.1| ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och 149]
gi|338757874|gb|AEI94338.1| putative ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och
149]
Length = 433
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 210/326 (64%), Gaps = 21/326 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D +++ ++VA L R G++ PIQK + AM GRD++G A+TGTGKT AFG+P++
Sbjct: 3 DFEMMNLPPELVARLGRMGLNDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPLVA 62
Query: 160 KIIKFN----EKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
++++ + K RG LVLAPTRELA Q+ + F E+ + V GG I+
Sbjct: 63 QMLELDGRPAPKSVRG-----LVLAPTRELATQISVNLRSFAENT-KVKVAMVVGGQSIN 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
+Q++ L+ GVD +V TPGR++DL+ R A+ L E F+VLDEADQML +GF D+ I
Sbjct: 117 NQIKRLERGVDLLVATPGRLLDLMDRRAVRLDETVFLVLDEADQMLDMGFIHDLRKIASV 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSIATSMYEK 330
+P+ RQ+M+FSATMP + L N YL++P+ V++ K AD ++ ++ IA S EK
Sbjct: 177 IPKERQTMLFSATMPKQMNELANSYLRSPIRVEV--SPPGKAADKVTQEVHFIAKS--EK 232
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAF 389
+++ +++ +H + + +VF +TK +++L ++ K+ Y +HG+ SQ QR+R ++AF
Sbjct: 233 SALLIEMLDKH-REERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAF 291
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
+ G +L+ATDVAARGLD+P+V V
Sbjct: 292 KSGEIKVLVATDVAARGLDIPDVKHV 317
>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC0288-04]
gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC3059-06]
gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase [Streptococcus pneumoniae CGSP14]
gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae JJA]
gi|418074418|ref|ZP_12711671.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|418079024|ref|ZP_12716246.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|418081216|ref|ZP_12718426.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|418089950|ref|ZP_12727104.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|418098916|ref|ZP_12736013.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|418105697|ref|ZP_12742753.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|418115112|ref|ZP_12752098.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|418117270|ref|ZP_12754239.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|418123922|ref|ZP_12760853.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|418128466|ref|ZP_12765359.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|418137658|ref|ZP_12774496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|418173983|ref|ZP_12810595.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|418178645|ref|ZP_12815228.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|418182454|ref|ZP_12819015.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|418217036|ref|ZP_12843716.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|419431974|ref|ZP_13972107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|419440778|ref|ZP_13980823.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|419465129|ref|ZP_14005020.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|419469398|ref|ZP_14009266.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|419471486|ref|ZP_14011345.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|419473652|ref|ZP_14013501.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|419497961|ref|ZP_14037668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|419535050|ref|ZP_14074549.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|421281583|ref|ZP_15732380.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04672]
gi|421309995|ref|ZP_15760620.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62681]
gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
CGSP14]
gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC0288-04]
gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC3059-06]
gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
700669]
gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae JJA]
gi|353746551|gb|EHD27211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|353748487|gb|EHD29139.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|353751955|gb|EHD32586.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|353761141|gb|EHD41713.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|353768898|gb|EHD49420.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|353775873|gb|EHD56352.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|353785196|gb|EHD65615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|353787951|gb|EHD68349.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|353795742|gb|EHD76088.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|353798965|gb|EHD79288.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|353837939|gb|EHE18020.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|353842704|gb|EHE22750.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|353850691|gb|EHE30695.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|353870309|gb|EHE50182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|353900613|gb|EHE76164.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|379536729|gb|EHZ01915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|379544202|gb|EHZ09347.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|379546202|gb|EHZ11341.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|379550816|gb|EHZ15912.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|379563211|gb|EHZ28215.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|379577848|gb|EHZ42765.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|379598794|gb|EHZ63579.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|379629055|gb|EHZ93656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|395880848|gb|EJG91899.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04672]
gi|395909610|gb|EJH20485.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62681]
Length = 524
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 203/317 (64%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEATIQ-----ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 529
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 193/319 (60%), Gaps = 15/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++K
Sbjct: 4 FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPLVEK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
I N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 64 ITPANRVQ-------AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRAL 116
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P RQ
Sbjct: 117 RQGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIINHMPDERQ 176
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQL 337
+++FSATMPP I+ L +Y+K P T+ + ++ A I +Y + S+ L
Sbjct: 177 TLLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAPLIEQVYYKVFDRNKVESLCRIL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+E + G I+F +TKR D L+ + ++ Y + LHGD+SQ+QR++ ++AFR+G
Sbjct: 235 DSEDVELG--IIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEF 292
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARG+DV NV V
Sbjct: 293 LIATDVAARGIDVGNVSHV 311
>gi|444398031|ref|ZP_21195514.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0006]
gi|444260688|gb|ELU66996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0006]
Length = 501
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
DSM 15894]
Length = 605
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 211/355 (59%), Gaps = 23/355 (6%)
Query: 100 DISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
D+S D + Q+IV AL GI+ FPIQ L A+Q D+IG+A+TGTGKTL FGIP+
Sbjct: 67 DVSFADFGVRQEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPL 126
Query: 158 LDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGT 209
L++++ ++E G+ P +V+APTRELA QV + ++ PSL I +YGG
Sbjct: 127 LNRVVAPGEPGWDELVAPGK-PQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGR 185
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
Q+ L G + VVGTPGR++DL+ + LNL + +VLDEAD+ML +GF DVE I
Sbjct: 186 AYEPQIEQLQRGAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKI 245
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY- 328
L RLP R +M+FSATMP + S+ +Y+ P + D+ G+++ +I +Y
Sbjct: 246 LSRLPAKRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDE----GVTVKNIKQVVYR 301
Query: 329 ----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRE 383
+K ++ +L+ + G+ IVF +TKR A +++ + + + +HGD+ Q RE
Sbjct: 302 AHALDKIEVLARLLQAEGR-GRSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGARE 360
Query: 384 RTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+ L A R G+ ++L+ATDVAARG+DV +V V E +L ++ R G++
Sbjct: 361 QALRALRHGKIDVLVATDVAARGIDVDDVTHVVNYQCPEDERTYLH-RVGRTGRA 414
>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
Length = 603
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 196/325 (60%), Gaps = 12/325 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+ E + + L +SQ + AL G PIQ + + GRD+IG+A+TGTGKT AF
Sbjct: 8 QKESVRFADLSLSQPVQDALVEIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAFA 67
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPI 211
+P+L ++ NE P ++LAPTRELA QV + + L+ +YGGT
Sbjct: 68 LPLL-SMLDPNED-----GPKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTDF 121
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
+ Q RALD VVGTPGR++D I+R +L+LS + VVLDEAD+ML +GF EDVE ILE
Sbjct: 122 TRQFRALDRKPAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWILE 181
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P RQ+ +FSATMPP I ++ K LK P+TV + ++ ++ + M K
Sbjct: 182 HTPSERQTALFSATMPPRIAAIAKKQLKEPVTV-AIKNTTATVSTVRQRFIKCNGMRHKI 240
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFR 390
++G L+ E + IVFT+TK A +A +A S + E +HGDI+Q++RE+ +S +
Sbjct: 241 EVLGNLL-ETEERDAAIVFTRTKSAASMIAEELAASGHAVEAIHGDITQNKREKAVSLLK 299
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
+G+ +IL+ATDVAARGLDV + V
Sbjct: 300 EGKIDILVATDVAARGLDVDRISHV 324
>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
Length = 634
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 193/322 (59%), Gaps = 13/322 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF
Sbjct: 2 QDSSIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-NLDQ-----RKPQAVVLAPTRELAIQVAAEMKNLGQNINGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
P+ Q ++FSATMPP ++ + +++L+ P VD+ G + D + EK
Sbjct: 176 HAPETAQRVLFSATMPPMLKKIVDRFLREPEYVDVAGKN--HTVDKVEQQFWVVKGVEKD 233
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 234 EAMARLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 292
Query: 391 DGRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 293 QGVIDILVATDVVARGLDVPRI 314
>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430842364|ref|ZP_19460279.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|431081588|ref|ZP_19495678.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|431118220|ref|ZP_19498174.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|431592214|ref|ZP_19521450.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|431738949|ref|ZP_19527889.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|431740772|ref|ZP_19529683.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430493445|gb|ELA69748.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|430565520|gb|ELB04666.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|430568177|gb|ELB07234.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|430591839|gb|ELB29866.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|430596492|gb|ELB34316.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|430602855|gb|ELB40405.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
Length = 503
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 199/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI +E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRHELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++K+P V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKSPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F++G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|398814336|ref|ZP_10573017.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398036605|gb|EJL29814.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 529
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 193/319 (60%), Gaps = 15/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++K
Sbjct: 4 FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPLVEK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
I N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 64 ITPANRVQ-------AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRAL 116
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P RQ
Sbjct: 117 RQGVQIVVGTPGRVMDHLRRKTLKLDNVHTLVLDEADEMLDMGFIEDIETIINHMPDERQ 176
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-SLYSIATSMYEKPSIIGQL 337
+++FSATMPP I+ L +Y+K P T+ + ++ A I +Y + S+ L
Sbjct: 177 TLLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAPLIEQVYYKVFDRNKVESLCRIL 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+E + G I+F +TKR D L+ + ++ Y + LHGD+SQ+QR++ ++AFR+G
Sbjct: 235 DSEDVELG--IIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEF 292
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARG+DV NV V
Sbjct: 293 LIATDVAARGIDVGNVSHV 311
>gi|424885553|ref|ZP_18309164.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393177315|gb|EJC77356.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 593
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 198/328 (60%), Gaps = 14/328 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 49 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 108
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + L V GG I+ Q
Sbjct: 109 KLLA-DERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSHLRVNVVVGGVSINKQQLQ 167
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 168 LEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKR 227
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL +P+TV++ K AD + Y +K ++ +
Sbjct: 228 QTMLFSATMPKSIADLAGEYLVDPVTVEVT--PPGKAADKVEQYVHFVGGKNDKTELLRK 285
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 286 SLTENPD-GRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 344
Query: 396 ILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 345 TLIATDVAARGIDIPAVSHVYNYDLPEV 372
>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
Length = 603
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 196/328 (59%), Gaps = 13/328 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D++ D S+ ++ LA +G PIQ+A M GRD++G+A+TGTGKT
Sbjct: 36 DAATDARSGFDGFGFSEALLRTLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTA 95
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGG 208
AF +P+L+++ G P LVLAPTRELA QV + F A P L+ + +YGG
Sbjct: 96 AFALPLLERL------QPEGPGPQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGG 149
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
+ Q+ +L GVD VVGTPGRV+D +++ LN S ++ +VLDEAD+ML +GF +DVE
Sbjct: 150 SDFRSQIHSLKRGVDVVVGTPGRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEW 209
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
IL++LP+ RQ ++FSATMP IR L+ +YL+ P + + + +K A I I
Sbjct: 210 ILDQLPEERQVVLFSATMPAEIRRLSKRYLREPAEITI--KTQEKEARRIRQRCITLQNS 267
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K + +++ E G I+F +TK ++ + A ++ L+GD+ Q+QRERT+
Sbjct: 268 HKLEALNRVL-EAVTGEGVIIFARTKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVE 326
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
R G NIL+ATDVAARGLDV + LV
Sbjct: 327 RLRKGTVNILVATDVAARGLDVERIGLV 354
>gi|418194167|ref|ZP_12830656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
gi|353857745|gb|EHE37707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
Length = 524
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|227548399|ref|ZP_03978448.1| superfamily II helicase, partial [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 683
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 201/336 (59%), Gaps = 14/336 (4%)
Query: 85 DDYVAYDDSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRA 143
DD D+ +E + KLD+ ++AA+ G + PIQ + M+GRD++G A
Sbjct: 89 DDTPKADEPKAEEPKNGFEKLDLPDSVIAAVKMVGFEQPSPIQAETIPLLMEGRDVVGLA 148
Query: 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203
+TGTGKT AF +P+L +I + R+P LVLAPTRELA QV F A L I
Sbjct: 149 QTGTGKTAAFALPVLSQI------DPQLRHPQALVLAPTRELALQVADSFQSFADHLGKI 202
Query: 204 CV---YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
V YGG Q+ L G +VGTPGRVID +++ +L++S ++F+VLDEAD+ML++
Sbjct: 203 QVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNM 262
Query: 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL 320
GF EDVE ILE P +Q +FSATMP IR ++ +YL +P V + S+ + I+
Sbjct: 263 GFQEDVERILEDTPNTKQVALFSATMPNGIRKISKQYLNDPAEVTV--KSETRTNTNITQ 320
Query: 321 YSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQ 379
+ T+ K I +++ E + IVF +TK + + LA + A+ ++ ++GDI+Q
Sbjct: 321 RYLFTAHRNKLDAITRIL-EVTEFEAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQ 379
Query: 380 SQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
QRERT+ RDGR +IL+ATDVAARGLDV + V
Sbjct: 380 QQRERTVDQLRDGRLDILVATDVAARGLDVERISHV 415
>gi|452912129|ref|ZP_21960782.1| putative ATP-dependent RNA helicase [Kocuria palustris PEL]
gi|452832711|gb|EME35539.1| putative ATP-dependent RNA helicase [Kocuria palustris PEL]
Length = 655
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/342 (38%), Positives = 204/342 (59%), Gaps = 8/342 (2%)
Query: 81 QSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMI 140
++ +D V + + E + + +DI ALA GI FPIQ L A+ G+D+I
Sbjct: 50 EAIAEDSVEVEPQAPVETRTFADFGVREDIAEALAEAGIVHPFPIQSMTLPIALSGQDII 109
Query: 141 GRARTGTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
G+A+TGTGKTL FGIP + ++ ++ + R P L++ PTRELA QV + +
Sbjct: 110 GQAKTGTGKTLGFGIPAVQNVVGRDDDGWDRLERPGAPQALIVVPTRELAVQVGSDLSIA 169
Query: 197 APSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
A + + + +YGG Q+ AL+ GV+ VVGTPGR+IDL +++ L+LS+V+ VVLDEA
Sbjct: 170 AKTRNARVLTIYGGRAYEPQIEALEKGVEVVVGTPGRLIDLNRQHHLDLSQVKTVVLDEA 229
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML +GF DVE +L +P+ +M+FSATMP + ++ +Y+ P+ + +
Sbjct: 230 DEMLDLGFLPDVEKLLSAVPRVPHTMLFSATMPGPVVAMARRYMSKPMHIRAAAPDEGST 289
Query: 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPL 373
I +KP ++G+++ + G+CI+F +TKR A ++A + + + PL
Sbjct: 290 KADIRQVVYRAHNLDKPEMLGRILQADGR-GRCIIFIRTKRTAAKVADELIERGFAAAPL 348
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
HGD+ Q RE+ L AFR + +IL+ATDVAARG+DV +V V
Sbjct: 349 HGDLGQGAREQALRAFRSSKVDILVATDVAARGIDVDDVTHV 390
>gi|419433872|ref|ZP_13973990.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
gi|379576873|gb|EHZ41797.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
Length = 511
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 203/317 (64%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEATIQ-----ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|443294242|ref|ZP_21033336.1| Putative ATP-dependent RNA helicase (DEAD/DEAH box helicase
domain-containing protein) [Micromonospora lupini str.
Lupac 08]
gi|385882547|emb|CCH21487.1| Putative ATP-dependent RNA helicase (DEAD/DEAH box helicase
domain-containing protein) [Micromonospora lupini str.
Lupac 08]
Length = 580
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 197/324 (60%), Gaps = 6/324 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+ E + L ++ V ALA GI++ F IQ+ + A++G D+IG+A TGTGKTL FG
Sbjct: 34 RPEAPTFAALGAREETVEALAAAGITRAFAIQEYAIPIALRGVDLIGQAPTGTGKTLGFG 93
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPIS 212
+P+LD++ F G P LV+ PTREL QV K+ + + + + +YGG
Sbjct: 94 VPLLDRV--FAPGEGSDGVPQALVVVPTRELGIQVAKDLAAAGRTRGVRVLPIYGGVAYE 151
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GV+ +VGTPGR++DL K+ L L V +VLDEAD+ML +GF +DVE IL
Sbjct: 152 PQIDALRKGVEILVGTPGRLMDLQKQKHLRLDRVHALVLDEADRMLDLGFLDDVEKILAM 211
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
LP++RQ+M+FSATMP I +L+ ++L+ P+T+ ++ + T K
Sbjct: 212 LPEDRQTMLFSATMPDPIVTLSRRFLRQPMTIHAGHTAETGPSPQTEQLVYRTHSMNKVE 271
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++ +++ + G ++FT+TKR ADR+A + + + +HGD+ Q RER L AFR
Sbjct: 272 VVARILQAEGR-GLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRA 330
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+ +IL+ATDVAARGLDV V V
Sbjct: 331 GKIDILVATDVAARGLDVTGVTHV 354
>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TIGR4]
gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, [Streptococcus pneumoniae R6]
gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
TIGR4]
gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase [Streptococcus pneumoniae D39]
gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974]
gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974M2]
gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|387626806|ref|YP_006062982.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV104]
gi|387759711|ref|YP_006066689.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV200]
gi|410476960|ref|YP_006743719.1| ATP-dependent RNA helicase [Streptococcus pneumoniae gamPNI0373]
gi|417679565|ref|ZP_12328961.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|417694475|ref|ZP_12343662.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|417696748|ref|ZP_12345926.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|417698980|ref|ZP_12348151.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|418076815|ref|ZP_12714048.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|418092190|ref|ZP_12729331.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|418096685|ref|ZP_12733796.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|418108014|ref|ZP_12745051.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|418110539|ref|ZP_12747560.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|418126249|ref|ZP_12763155.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|418130744|ref|ZP_12767627.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|418139918|ref|ZP_12776743.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|418144547|ref|ZP_12781342.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|418146842|ref|ZP_12783620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|418148961|ref|ZP_12785723.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|418167190|ref|ZP_12803845.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|418169585|ref|ZP_12806227.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|418180949|ref|ZP_12817518.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|418185328|ref|ZP_12821869.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|418187578|ref|ZP_12824101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|418189826|ref|ZP_12826338.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|418192038|ref|ZP_12828540.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|418214793|ref|ZP_12841527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|418221614|ref|ZP_12848267.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|418230371|ref|ZP_12856970.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|418234799|ref|ZP_12861375.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|419423639|ref|ZP_13963852.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|419453945|ref|ZP_13993915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|419458186|ref|ZP_13998128.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|419478235|ref|ZP_14018059.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|419484830|ref|ZP_14024605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|419489360|ref|ZP_14029109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|419504337|ref|ZP_14044005.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|419506481|ref|ZP_14046142.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|419508671|ref|ZP_14048323.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|419510850|ref|ZP_14050491.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|419515103|ref|ZP_14054728.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|419530527|ref|ZP_14070054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|421211472|ref|ZP_15668454.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|421213518|ref|ZP_15670473.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|421215694|ref|ZP_15672615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|421221131|ref|ZP_15677964.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|421222508|ref|ZP_15679299.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|421232303|ref|ZP_15688944.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|421234489|ref|ZP_15691107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|421238220|ref|ZP_15694790.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|421243506|ref|ZP_15700021.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|421245438|ref|ZP_15701936.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|421247828|ref|ZP_15704309.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|421249814|ref|ZP_15706271.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|421266588|ref|ZP_15717468.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|421271008|ref|ZP_15721862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|421273139|ref|ZP_15723980.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|421279376|ref|ZP_15730182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|421294878|ref|ZP_15745599.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|421296428|ref|ZP_15747137.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|421301457|ref|ZP_15752127.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|421314475|ref|ZP_15765062.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|444382571|ref|ZP_21180772.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444386260|ref|ZP_21184321.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444387771|ref|ZP_21185787.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444389316|ref|ZP_21187233.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444391706|ref|ZP_21189516.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444394603|ref|ZP_21192154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444398902|ref|ZP_21196377.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444403416|ref|ZP_21200513.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444404127|ref|ZP_21201089.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444407649|ref|ZP_21204316.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444417903|ref|ZP_21213901.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444420547|ref|ZP_21216319.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
gi|61223743|sp|P0A4D7.1|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|61223744|sp|P0A4D8.1|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
TIGR4]
gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|353746955|gb|EHD27613.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|353763545|gb|EHD44099.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|353768406|gb|EHD48930.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|353778291|gb|EHD58759.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|353781936|gb|EHD62376.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|353796189|gb|EHD76534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|353802068|gb|EHD82368.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|353807013|gb|EHD87285.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|353811297|gb|EHD91539.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|353812417|gb|EHD92652.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|353829182|gb|EHE09316.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|353834176|gb|EHE14281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|353843021|gb|EHE23066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|353848612|gb|EHE28624.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|353849563|gb|EHE29568.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|353853553|gb|EHE33534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|353855124|gb|EHE35094.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|353869523|gb|EHE49404.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|353874924|gb|EHE54778.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|353885252|gb|EHE65041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|353886421|gb|EHE66203.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|353904697|gb|EHE80147.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|379529850|gb|EHY95091.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|379565671|gb|EHZ30663.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|379573435|gb|EHZ38390.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|379581583|gb|EHZ46467.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|379586211|gb|EHZ51065.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|379586902|gb|EHZ51752.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|379605725|gb|EHZ70475.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|379608395|gb|EHZ73141.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|379611116|gb|EHZ75844.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|379626015|gb|EHZ90641.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|379631453|gb|EHZ96030.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|379635652|gb|EIA00211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|395572580|gb|EJG33175.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|395579272|gb|EJG39776.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|395579901|gb|EJG40396.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|395585395|gb|EJG45779.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|395588676|gb|EJG49004.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|395594806|gb|EJG55041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|395600343|gb|EJG60500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|395603569|gb|EJG63705.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|395607005|gb|EJG67105.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|395607965|gb|EJG68061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|395613189|gb|EJG73219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|395613508|gb|EJG73536.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|395866656|gb|EJG77784.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|395867222|gb|EJG78346.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|395874342|gb|EJG85428.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|395878869|gb|EJG89931.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|395893447|gb|EJH04434.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|395895301|gb|EJH06276.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|395899017|gb|EJH09961.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|395913160|gb|EJH24013.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|406369905|gb|AFS43595.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae gamPNI0373]
gi|444247988|gb|ELU54509.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444251731|gb|ELU58199.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444251826|gb|ELU58293.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444257916|gb|ELU64249.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444259845|gb|ELU66154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444264468|gb|ELU70543.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444264962|gb|ELU70998.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444269638|gb|ELU75442.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444271245|gb|ELU76996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444277356|gb|ELU82867.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444282368|gb|ELU87637.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444284223|gb|ELU89379.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
Length = 524
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|387757824|ref|YP_006064803.1| DEAD/DEAH box helicase [Streptococcus pneumoniae OXC141]
gi|418133033|ref|ZP_12769904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|418232585|ref|ZP_12859172.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|418237043|ref|ZP_12863610.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|419467196|ref|ZP_14007077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|419480433|ref|ZP_14020238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|419500133|ref|ZP_14039827.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|419512979|ref|ZP_14052611.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|419517184|ref|ZP_14056800.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|421283724|ref|ZP_15734510.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|421299049|ref|ZP_15749736.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|353804916|gb|EHD85194.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|353887312|gb|EHE67092.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|353892004|gb|EHE71754.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|379542943|gb|EHZ08095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|379570387|gb|EHZ35351.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|379599441|gb|EHZ64224.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|379634144|gb|EHZ98709.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|379639257|gb|EIA03801.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|395880410|gb|EJG91462.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|395900520|gb|EJH11458.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|429316448|emb|CCP36148.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034156]
gi|429321608|emb|CCP35074.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994039]
gi|429323428|emb|CCP31115.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994038]
Length = 524
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503322|ref|YP_003725262.1| DEAD/DEAH box helicase [Streptococcus pneumoniae TCH8431/19A]
gi|387788640|ref|YP_006253708.1| cold-shock DEAD box protein A [Streptococcus pneumoniae ST556]
gi|417313062|ref|ZP_12099774.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|418083388|ref|ZP_12720585.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|418085577|ref|ZP_12722756.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|418094373|ref|ZP_12731500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|418101042|ref|ZP_12738126.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|418119027|ref|ZP_12755984.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|418142096|ref|ZP_12778909.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|418151090|ref|ZP_12787836.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|418153319|ref|ZP_12790057.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16121]
gi|418164879|ref|ZP_12801548.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|418196212|ref|ZP_12832690.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|418198412|ref|ZP_12834871.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|418223785|ref|ZP_12850425.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|418228090|ref|ZP_12854707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|419425531|ref|ZP_13965727.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|419427644|ref|ZP_13967825.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|419429784|ref|ZP_13969948.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|419436377|ref|ZP_13976465.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|419438621|ref|ZP_13978689.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|419445096|ref|ZP_13985111.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|419447242|ref|ZP_13987247.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|419449374|ref|ZP_13989370.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|419502236|ref|ZP_14041920.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|419519298|ref|ZP_14058904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|419527922|ref|ZP_14067465.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|421287857|ref|ZP_15738620.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58771]
gi|421290152|ref|ZP_15740902.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA54354]
gi|421305543|ref|ZP_15756197.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62331]
gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
TCH8431/19A]
gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|353754608|gb|EHD35220.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|353756286|gb|EHD36887.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|353764869|gb|EHD45417.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|353771503|gb|EHD52012.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|353790979|gb|EHD71360.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|353806347|gb|EHD86621.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|353814300|gb|EHD94526.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|353816870|gb|EHD97078.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16121]
gi|353829343|gb|EHE09476.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|353860830|gb|EHE40770.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|353862511|gb|EHE42443.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|353878583|gb|EHE58413.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|353880485|gb|EHE60300.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|379138382|gb|AFC95173.1| cold-shock DEAD box protein A [Streptococcus pneumoniae ST556]
gi|379537028|gb|EHZ02213.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|379549962|gb|EHZ15064.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|379566075|gb|EHZ31066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|379572789|gb|EHZ37746.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|379600449|gb|EHZ65230.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|379613198|gb|EHZ77911.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|379614782|gb|EHZ79492.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|379617837|gb|EHZ82517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|379618992|gb|EHZ83666.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|379621992|gb|EHZ86628.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|379641135|gb|EIA05673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|395886420|gb|EJG97436.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58771]
gi|395887837|gb|EJG98851.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA54354]
gi|395904501|gb|EJH15415.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62331]
Length = 524
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|403528202|ref|YP_006663089.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
gi|403230629|gb|AFR30051.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
Length = 726
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 192/322 (59%), Gaps = 7/322 (2%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +P
Sbjct: 70 GVRFVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPA 129
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQ 214
L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+ Q
Sbjct: 130 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 189
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFA+DVE I ++ P
Sbjct: 190 LAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTP 249
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ +FSATMP IR ++ +YL NP + V A+ Y ++ ++
Sbjct: 250 ETRQVALFSATMPGQIRRMSKQYLNNPAEIS-VKSKTTTGANTKQRYLQVMGPHKLDALT 308
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
L E G I F +TK + LA + A+ + ++GDI Q QRERT+ A ++GR
Sbjct: 309 RILEVEEFDG--VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGR 366
Query: 394 FNILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLDV + V
Sbjct: 367 IDILVATDVAARGLDVERISHV 388
>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 726
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 192/322 (59%), Gaps = 7/322 (2%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +P
Sbjct: 70 GVRFVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPA 129
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQ 214
L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+ Q
Sbjct: 130 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 189
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFA+DVE I ++ P
Sbjct: 190 LAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTP 249
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ +FSATMP IR ++ +YL NP + V A+ Y ++ ++
Sbjct: 250 ETRQVALFSATMPGQIRRMSKQYLNNPAEIS-VKSKTTTGANTKQRYLQVMGPHKLDALT 308
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
L E G I F +TK + LA + A+ + ++GDI Q QRERT+ A ++GR
Sbjct: 309 RILEVEEFDG--VIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGR 366
Query: 394 FNILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLDV + V
Sbjct: 367 IDILVATDVAARGLDVERISHV 388
>gi|421241060|ref|ZP_15697605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|395607438|gb|EJG67535.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
Length = 524
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 205/328 (62%), Gaps = 23/328 (7%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L++S++I+ A+ G + PIQ + +QG+D+IG+A+TGTGKT AFGIP
Sbjct: 2 EKIKFEELNLSKEILKAIEELGYEEATPIQAKTIPIILQGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
L++I + L+L PTRELA QV +E + + ++ + +YGG I
Sbjct: 62 TLERI------DPSKKTIQALILCPTRELAIQVSEELKKLSKYKKAIGILPIYGGQSIER 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+++L GV+ ++GTPGR ID I+R L L +++ +LDEAD+ML++GF ED+E IL++
Sbjct: 116 QIQSLKKGVNIIIGTPGRCIDHIERGTLKLEDIKLFILDEADEMLNMGFIEDIEFILDKT 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE---- 329
P+++Q+++FSATMP I LT KYLKNP + +V +++ +I +E
Sbjct: 176 PKDKQTLLFSATMPDPILKLTKKYLKNPEHIKVVHKE-------LTVPTIEQIYFEVKEA 228
Query: 330 -KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K I+ +L+ + +VF TK+ D + ++ A+ Y + LHGD+ Q+QR+R ++
Sbjct: 229 HKIEILSRLLDIY-NPKLALVFCNTKKKVDEVVSSLQARGYLADALHGDMKQNQRDRVMA 287
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
FR G ++L+ATDVAARG+DV +V++V
Sbjct: 288 KFRSGTIDVLVATDVAARGIDVEDVEIV 315
>gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
Length = 593
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 200/323 (61%), Gaps = 19/323 (5%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-- 163
+ +IV ALA GI FPIQ L AM G D+IG+A+TGTGKTL FG+P+L +++
Sbjct: 21 VRPEIVQALADAGIVAPFPIQAMTLPVAMAGHDIIGQAKTGTGKTLGFGVPLLHRVVAPG 80
Query: 164 ---FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
++E G+ P LV+ PTRELA QV K+ ++ S+ + +YGG Q++AL
Sbjct: 81 EPGYDELPAPGK-PQALVIVPTRELAVQVAKDLEAASTKRSVRIVQLYGGRAYEPQVKAL 139
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ GV+ VVGTPGR+IDL+K+ L+L+ Q VVLDEAD+ML +GF DVE +L R P R
Sbjct: 140 EQGVEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLARTPAVRH 199
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----EKPSI 333
+M+FSATMP + ++ +Y+K P + D D G ++ +I +Y +K +
Sbjct: 200 TMLFSATMPGAVVAMARRYMKQPTHI-RANDPDDG---GQTVKNIKQVVYRAHALDKVEV 255
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G IVF +TKR A ++A +A + + +HGD+ Q RE+ L AFR G
Sbjct: 256 LARILQSEGR-GLSIVFARTKRTAAKVADELADRGFASGAIHGDLGQGAREQALRAFRSG 314
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ ++L+ATDVAARG+DV V V
Sbjct: 315 KIDVLVATDVAARGIDVDEVTHV 337
>gi|237786051|ref|YP_002906756.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758963|gb|ACR18213.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
DSM 44385]
Length = 558
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 192/323 (59%), Gaps = 12/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+L ++ +IV ALA GI+ F IQ+ L A+ G+D+IG+ARTG GKTLA+G+P+LD+
Sbjct: 94 FEELGVAAEIVDALAEHGITHTFAIQELTLPLALDGKDLIGQARTGMGKTLAYGVPLLDR 153
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE----------FHESAPSLDTICVYGGTP 210
I P LV+APTRELA QV + F+E SL + GG P
Sbjct: 154 IFDDAAIPELDGTPRALVVAPTRELAYQVADDLTLAARHLANFNEEHRSLRVTTICGGHP 213
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ L G D +VGTPGR++DL K LNLS V +VLDEAD+ML +GF D+E IL
Sbjct: 214 FEKQIAQLREGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKIL 273
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
+++P+ RQ+++FSATMP I +L ++ P+ + G D + K
Sbjct: 274 QQVPEKRQTILFSATMPAPIMALARTFMNKPVHIRAEGTDDSTTHTTTKQVAFKNHKLNK 333
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAF 389
+ + ++ H +G + I+FT+TKR A +A +A + + +HGD++Q RE++L+AF
Sbjct: 334 LATLSAILQAHNRG-RTIIFTRTKRSAADVADDLAQRGFLVGAVHGDMAQPAREKSLNAF 392
Query: 390 RDGRFNILIATDVAARGLDVPNV 412
R + IL+ATDVAARG+DV +V
Sbjct: 393 RSKKIEILVATDVAARGIDVDDV 415
>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
Length = 823
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 195/307 (63%), Gaps = 13/307 (4%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
A+ + G PIQ A + QGRD++G A+TGTGKT AF +PIL ++ + +K
Sbjct: 168 AVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKK----- 222
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRALDYGVDAVVGTP 229
P LVL+PTRELA QV F E A L + V YGG Q+ L G VVGTP
Sbjct: 223 -PQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTP 281
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID ++R +L+LSE++++VLDEAD+ML++GF EDVE IL P+++Q+ +FSATMP
Sbjct: 282 GRVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPAS 341
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
IR L+ +YL++P V + S Q+ AD I + + + K + +++ E + I+
Sbjct: 342 IRRLSKQYLEDPREVTI--KSQQRTADNIHQQYLLVNHHYKLDALTRIL-EVTEFDAMIM 398
Query: 350 FTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408
F +TK++ + LA + A+ ++ ++GD++Q+QRERT+ RDGR +IL+ATDVAARGLD
Sbjct: 399 FARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLD 458
Query: 409 VPNVDLV 415
V + V
Sbjct: 459 VERISHV 465
>gi|256831947|ref|YP_003160674.1| DEAD/DEAH box helicase [Jonesia denitrificans DSM 20603]
gi|256685478|gb|ACV08371.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
20603]
Length = 544
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 200/324 (61%), Gaps = 21/324 (6%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-- 163
+ DIVAALA GI FPIQ L A+ G D+IG+A+TGTGKTL FG+P+L++++
Sbjct: 30 LRSDIVAALASAGIVSPFPIQSLTLPVALSGHDIIGQAKTGTGKTLGFGLPLLNRVVAPG 89
Query: 164 ---FNEKHGRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRAL 218
F++ G+ P +V+ PTRELA QV K E S S+ + +YGG Q+ AL
Sbjct: 90 EEGFDQLPAPGK-PQAVVIVPTRELAVQVAKDLELASSTRSVRIVQLYGGRAYEPQIAAL 148
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ GV+ VVGTPGR+ID++K+ L L +VLDEAD+ML +GF DVE IL + P RQ
Sbjct: 149 NRGVEVVVGTPGRMIDMLKQKHLTLLRAGVIVLDEADEMLDLGFLPDVEKILAQTPAVRQ 208
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----EKPSI 333
M+FSATMP + ++ +Y+ P + D G ++ +I +Y +K +
Sbjct: 209 MMLFSATMPGAVVAMARRYMNQPTHIRAQDPEDL----GSTVKNITQVVYRAHPLDKVEM 264
Query: 334 IGQLITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
I +++ A+G G ++FT+TKR+A ++A + + + LHGD+ Q RE+ L AFR+
Sbjct: 265 IARIL--QARGRGLSVIFTRTKRNAAKVADELTERGFAAGALHGDLGQGAREQALRAFRN 322
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+ ++L+ATDVAARG+DV NV V
Sbjct: 323 GKVDVLVATDVAARGIDVENVTHV 346
>gi|384515128|ref|YP_005710220.1| hypothetical protein CULC809_00587 [Corynebacterium ulcerans 809]
gi|334696329|gb|AEG81126.1| hypothetical protein CULC809_00587 [Corynebacterium ulcerans 809]
Length = 441
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 189/315 (60%), Gaps = 4/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IG+ARTG GKTL FG+P+LD+
Sbjct: 10 FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA+QV ++ +A + VYGG P Q+ L
Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAQQVGEDLELAARHTPVRVTTVYGGRPYEEQIHVL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
D GVD V GTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q
Sbjct: 130 DKGVDVVAGTPGRLIDLHQQGHLILDHVAILVLDEADEMLDLGFFPDIEKLLGALTHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 190 TLLFSATMPGPVLTLARTFMLRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARAL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
H + GK I+FT+TKR A LA +A + + +HGD+ Q+ RE +LS FRD R +IL
Sbjct: 250 QAHER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLSMFRDSRVDIL 308
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARGLD+ +V
Sbjct: 309 VATDVAARGLDIDDV 323
>gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase, partial [Actinomyces sp. oral taxon 171
str. F0337]
gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 471
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 212/351 (60%), Gaps = 24/351 (6%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISK-----LDISQDIVAALARRGISKLFPIQKAVLEPAM 134
A + V D D + + + D+S+ D+ +I AL+ +GI+ FPIQ L A+
Sbjct: 46 AHAPVLDEATPDITDEGDRTDLSRKTFADFDVEPEICEALSAKGITHPFPIQALTLPVAL 105
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQV 189
+G+D+IG+A+TGTGKTL FGIP+L + ++E G +P L++ PTRELAKQV
Sbjct: 106 EGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGWDEDPASG-SPQALIILPTRELAKQV 164
Query: 190 EKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
+E +A ++ + VYGG Q+ L+ G + VVGTPGR+IDL++R L+L+ V
Sbjct: 165 AEELSTAAAKRTVRIVQVYGGRAYEPQIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVT 224
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
VVLDEAD+ML +GF DVE IL R +R +M+FSATMP + +L +Y+ P +
Sbjct: 225 TVVLDEADEMLDLGFLPDVEKILARTRTDRHTMLFSATMPGAVVALARRYMTRPTHIRAQ 284
Query: 308 GDSDQKLADGISLYSIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAH 362
D+ G+++ ++ +Y K ++ +++ + G+ I+F +TKR A R+A
Sbjct: 285 DPGDE----GMTVQTVQQVVYRTHSMNKVEVVSRILQAEGR-GRTIIFARTKRTAARVAD 339
Query: 363 AM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
+ A+ + LHGD+ Q RE+ L AFR+ + ++L+ATDVAARG+DV +V
Sbjct: 340 DLRARGFATAALHGDLGQGAREQALRAFRNSKVDVLVATDVAARGIDVDDV 390
>gi|345009475|ref|YP_004811829.1| DEAD/DEAH box helicase [Streptomyces violaceusniger Tu 4113]
gi|344035824|gb|AEM81549.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
Tu 4113]
Length = 559
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 194/322 (60%), Gaps = 19/322 (5%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + + L + +++ ALA G + PIQ+ + P + GRD++G+A TGTGKT AF +P
Sbjct: 8 EQIGFADLRLRPELLRALAGLGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALP 67
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L +I + G G P LVL PTRELA Q + H L T + VYGG PI Q
Sbjct: 68 VLQRI----SQDGGGAEPSALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQ 123
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+RAL+ GVD VV TPGR +D I R L L ++ +VLDEAD+ML +GFAED++ ILE P
Sbjct: 124 LRALERGVDVVVATPGRALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILEGTP 183
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG------ISLYSIATSMY 328
+RQ+++FSATMP I ++ ++L+ P+ + + +K A G S Y +A +
Sbjct: 184 ADRQTVLFSATMPARIDAMARRHLRGPVRIQI---EREKPAPGETPKVRQSAYVVARA-- 238
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
+KP+ +G+++ + IVF +T+ D+L + + Y E LHG + Q QR+R +
Sbjct: 239 QKPAALGRVLDVESPEA-TIVFCRTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMG 297
Query: 388 AFRDGRFNILIATDVAARGLDV 409
R G ++L+ATDVAARGLD+
Sbjct: 298 RVRGGTADLLVATDVAARGLDI 319
>gi|421590985|ref|ZP_16035909.1| ATP-dependent RNA helicase, partial [Rhizobium sp. Pop5]
gi|403703636|gb|EJZ19816.1| ATP-dependent RNA helicase, partial [Rhizobium sp. Pop5]
Length = 339
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 196/321 (61%), Gaps = 10/321 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + + GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEQSIPLLISGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
K++ +E+ R L+LAPTREL Q+ K+F +P L V GG I+ Q
Sbjct: 63 KLLA-DERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSP-LRINVVVGGVSINKQQL 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+
Sbjct: 121 QLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++
Sbjct: 181 RQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPG--KAADKVEQYVHFVGGKNDKTELLR 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 239 KSLTENPD-GRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSI 297
Query: 395 NILIATDVAARGLDVPNVDLV 415
LIATDVAARG+D+P V V
Sbjct: 298 KTLIATDVAARGIDIPAVSHV 318
>gi|358446581|ref|ZP_09157126.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356607542|emb|CCE55468.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 675
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 197/325 (60%), Gaps = 13/325 (4%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S+ D + L + ++ A+A+ G + PIQ + M+GRD++G A+TGTGKT
Sbjct: 53 NSANDNPQGFANLGLPDNVQDAVAKVGYTTPSPIQSETIPILMEGRDVVGLAQTGTGKTA 112
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGG 208
AF +P+L +I N +H P LVLAPTRELA QV F A L + + +YGG
Sbjct: 113 AFALPVLSQI-DINARH-----PQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGG 166
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S+++F+VLDEAD+ML++GF EDVE
Sbjct: 167 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVER 226
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
IL P+ +Q +FSATMP IR L+ +YL NP V + S Q+ D I + T+
Sbjct: 227 ILADTPEEKQVALFSATMPNGIRRLSKQYLNNPAEVTV--KSQQRTNDNIKQRFLLTAHR 284
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLS 387
K +++ E IVF +TK + + +A + + YN ++GDI+Q+QRERT+
Sbjct: 285 AKLDAFTRIL-EVTDYDAMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVD 343
Query: 388 AFRDGRFNILIATDVAARGLDVPNV 412
+DGR +IL+ATDVAARGLDV +
Sbjct: 344 QLKDGRLDILVATDVAARGLDVDRI 368
>gi|343505544|ref|ZP_08743114.1| cold-shock DEAD-box protein A [Vibrio ichthyoenteri ATCC 700023]
gi|342807514|gb|EGU42702.1| cold-shock DEAD-box protein A [Vibrio ichthyoenteri ATCC 700023]
Length = 687
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 192/321 (59%), Gaps = 13/321 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S+L ++ I++AL G PIQ + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSELALNDAILSALDSMGFVSPTPIQAEAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
P+L+KI R P +VLAPTRELA QV E + L + +YGGT I
Sbjct: 63 PLLNKIDLAQ------RKPQAVVLAPTRELAIQVAAEMKNLGRNIAGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G +VGTPGRV DLI R+ L+L EV +LDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHVIVGTPGRVQDLINRDRLHLDEVNTFILDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++ Q ++FSATMPP ++++ ++L+ P+ VD+ G + D + EK
Sbjct: 177 APESAQRVLFSATMPPMLKNIVERFLREPVMVDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKT 293
Query: 392 GRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 294 GVIDILVATDVVARGLDVPRI 314
>gi|159036117|ref|YP_001535370.1| DEAD/DEAH box helicase [Salinispora arenicola CNS-205]
gi|157914952|gb|ABV96379.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
CNS-205]
Length = 548
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 198/319 (62%), Gaps = 6/319 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E ++L Q+ V ALA GI++ F IQ+ L A++G D+IG+A TGTGKTL FG+P
Sbjct: 23 EAPTFAELGARQETVDALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVP 82
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+L++++ E G P LV+ PTREL QV K+ + + + + +YGG Q
Sbjct: 83 LLEQVLAPAE--GGDGTPQALVVVPTRELGIQVAKDLQAAGSTRGVRVLPIYGGVAYEPQ 140
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GV+ +VGTPGR++DL K+ L L V+ +VLDEAD+ML +GF +DVE IL LP
Sbjct: 141 IEALRSGVEILVGTPGRLLDLAKQKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILP 200
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
++RQ+M+FSATMP I +L+ ++L+ P+T+ ++ + + T K I+
Sbjct: 201 EDRQTMLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSLNKIEIV 260
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+++ + G ++FT+TKR ADR+A + + + +HGD+ Q RER L AFR G+
Sbjct: 261 ARILQARGR-GLTMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGK 319
Query: 394 FNILIATDVAARGLDVPNV 412
+ L+ATDVAARG+DV V
Sbjct: 320 IDTLVATDVAARGIDVSGV 338
>gi|424788171|ref|ZP_18214930.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
gi|422112935|gb|EKU16692.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
Length = 514
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 198/322 (61%), Gaps = 16/322 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ +S +++A + + G + PIQ+ + AM+G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNEFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------NTENPFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ+++FSATMP I+ + K++K+P V + + + + + Y I EK +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKDPTHVKIA--AKELTTELVDQYYIRVKENEKFDTM 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + + E +HGD+ Q +R R L F++G
Sbjct: 231 TRLM-DVEQPDLSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNGN 289
Query: 394 FNILIATDVAARGLDVPNVDLV 415
++L+ATDVAARGLD+ V V
Sbjct: 290 LDVLVATDVAARGLDISGVTHV 311
>gi|419493712|ref|ZP_14033437.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
gi|379592285|gb|EHZ57101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
Length = 524
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEVTIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|254786531|ref|YP_003073960.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
gi|237683925|gb|ACR11189.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
Length = 604
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 200/327 (61%), Gaps = 15/327 (4%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
++ E L + L++ ++ + + G + PIQ A + ++GRD+IG A+TGTGKT AF
Sbjct: 5 TQAESLGFADLNLPSSLLDTVRKLGYERPSPIQAATIPALIEGRDVIGMAQTGTGKTAAF 64
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTP 210
+PIL KI K G +NP LVL PTRELA QV + F A P+ + +YGG
Sbjct: 65 ALPILAKI-----KSG-SKNPQALVLCPTRELAIQVSEAFQSYAANIPNFHVLPIYGGQD 118
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
+ Q+R L GV +VGTPGR++D + R +L+LSE+ VVLDEAD+ML +GF EDVE IL
Sbjct: 119 MRTQLRGLQRGVQVIVGTPGRLLDHLDRRSLDLSELHTVVLDEADEMLRMGFNEDVEAIL 178
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYE 329
++ P N Q +FSATMPP IR + + YLKNP+ V + ++ + I Y + + +
Sbjct: 179 KKTPGNHQIALFSATMPPPIRRVADTYLKNPVEVKI--ETSVTTNENIEQFYWLVSGTNK 236
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
++ L E +G I+F +TK LA + A+ ++ PL+GD++Q+ RERT+
Sbjct: 237 LEALTRILEVEDFEG--MIIFVRTKNSTVDLAERLNARGFSAAPLNGDMNQALRERTIEQ 294
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLV 415
+ G+ +++IATDVAARGLDV + V
Sbjct: 295 LKGGKLDMIIATDVAARGLDVERISHV 321
>gi|419495771|ref|ZP_14035488.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|421302943|ref|ZP_15753607.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
gi|379593857|gb|EHZ58668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|395901565|gb|EJH12501.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
Length = 519
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
[Aliivibrio salmonicida LFI1238]
Length = 641
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 193/317 (60%), Gaps = 13/317 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + +++AL G PIQ + + GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALEETLLSALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
KI N K NP +++APTRELA QV K + L + +YGG I QMR
Sbjct: 67 KI---NLKQ---HNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P+
Sbjct: 121 ALSRGAHIVVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPET 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++++ ++YL++P VD+ G ++ + ++ EK + +
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLRDPARVDVAGTNNT--VEQVTQNFWIVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G +
Sbjct: 239 LL-ETEEIDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVID 297
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDV ARGLDVP +
Sbjct: 298 ILVATDVVARGLDVPRI 314
>gi|449961479|ref|ZP_21810850.1| putative ATP-dependent RNA helicase [Streptococcus mutans 4VF1]
gi|450141452|ref|ZP_21873112.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML1]
gi|450146360|ref|ZP_21874902.1| putative ATP-dependent RNA helicase [Streptococcus mutans 1ID3]
gi|449148357|gb|EMB52237.1| putative ATP-dependent RNA helicase [Streptococcus mutans 1ID3]
gi|449166365|gb|EMB69307.1| putative ATP-dependent RNA helicase [Streptococcus mutans 4VF1]
gi|449230998|gb|EMC30227.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML1]
Length = 517
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|424896364|ref|ZP_18319938.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393180591|gb|EJC80630.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 593
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 200/329 (60%), Gaps = 16/329 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 49 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 108
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
K++ +E+ R L+LAPTREL Q+ K+F + L V GG I+ Q
Sbjct: 109 KLLA-DERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKS-HLRVNVVVGGVSINKQQL 166
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+
Sbjct: 167 QLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 226
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L +YL +P+TV++ K AD + Y +K ++
Sbjct: 227 RQTMLFSATMPKSIADLAGEYLVDPVTVEVT--PPGKAADKVEQYVHFVGGKNDKTELLR 284
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 285 KSLTENPD-GRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSI 343
Query: 395 NILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 344 KTLIATDVAARGIDIPAVSHVYNYDLPEV 372
>gi|431801411|ref|YP_007228314.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
gi|430792176|gb|AGA72371.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
Length = 559
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 195/317 (61%), Gaps = 15/317 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+K
Sbjct: 8 FAALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA
Sbjct: 68 IDVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQ 336
Q+++FSAT+P IRS+ ++L+ P V + S + I + +K P+++
Sbjct: 182 QTVLFSATLPSSIRSIAERHLREPKHVKI--QSKTQTVTAIEQAHLMVHADQKIPAVLRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +
Sbjct: 240 LEVEEFDA--LIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297
Query: 396 ILIATDVAARGLDVPNV 412
I++ATDVAARGLDVP +
Sbjct: 298 IVVATDVAARGLDVPRI 314
>gi|450005719|ref|ZP_21826823.1| putative ATP-dependent RNA helicase [Streptococcus mutans NMT4863]
gi|449188314|gb|EMB90034.1| putative ATP-dependent RNA helicase [Streptococcus mutans NMT4863]
Length = 517
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|450088713|ref|ZP_21854900.1| putative ATP-dependent RNA helicase [Streptococcus mutans NV1996]
gi|450134981|ref|ZP_21871150.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML8]
gi|449148899|gb|EMB52727.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML8]
gi|449216305|gb|EMC16436.1| putative ATP-dependent RNA helicase [Streptococcus mutans NV1996]
Length = 517
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1873-00]
gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
gi|418087275|ref|ZP_12724444.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|418112928|ref|ZP_12749928.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|418121655|ref|ZP_12758598.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|418162615|ref|ZP_12799297.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|418176382|ref|ZP_12812973.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|418200618|ref|ZP_12837061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|418219306|ref|ZP_12845971.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|418239122|ref|ZP_12865673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419442942|ref|ZP_13982969.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|419455950|ref|ZP_13995907.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|419460394|ref|ZP_14000322.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|419462742|ref|ZP_14002645.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|419491499|ref|ZP_14031237.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|419523966|ref|ZP_14063541.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|419526295|ref|ZP_14065854.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|419532799|ref|ZP_14072314.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|421207032|ref|ZP_15664084.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|421230207|ref|ZP_15686871.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|421236689|ref|ZP_15693286.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|421268751|ref|ZP_15719620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|421275311|ref|ZP_15726140.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|421285836|ref|ZP_15736612.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60190]
gi|421292475|ref|ZP_15743209.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56348]
gi|421312409|ref|ZP_15763011.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58981]
gi|444409691|ref|ZP_21206276.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0076]
gi|444412727|ref|ZP_21209046.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0153]
gi|444415144|ref|ZP_21211388.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0199]
gi|444423615|ref|ZP_21219207.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0446]
gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1873-00]
gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
gi|353758291|gb|EHD38883.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|353783290|gb|EHD63719.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|353792491|gb|EHD72863.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|353827127|gb|EHE07281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|353840453|gb|EHE20517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|353864159|gb|EHE44077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|353873666|gb|EHE53525.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|353892113|gb|EHE71862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379530174|gb|EHY95414.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|379530530|gb|EHY95769.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|379551642|gb|EHZ16736.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|379556374|gb|EHZ21429.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|379557540|gb|EHZ22584.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|379592861|gb|EHZ57676.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|379605319|gb|EHZ70070.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|379627926|gb|EHZ92532.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|395574368|gb|EJG34946.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|395593733|gb|EJG53975.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|395601452|gb|EJG61599.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|395869005|gb|EJG80121.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|395873275|gb|EJG84367.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|395885823|gb|EJG96844.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60190]
gi|395891782|gb|EJH02776.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56348]
gi|395909263|gb|EJH20139.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58981]
gi|444273966|gb|ELU79621.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0153]
gi|444278936|gb|ELU84355.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0076]
gi|444280573|gb|ELU85935.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0199]
gi|444286587|gb|ELU91558.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0446]
Length = 524
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|421307797|ref|ZP_15758439.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60132]
gi|395907182|gb|EJH18076.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60132]
Length = 524
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|418103285|ref|ZP_12740357.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|419475927|ref|ZP_14015764.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|419487070|ref|ZP_14026832.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|421209364|ref|ZP_15666377.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|421225425|ref|ZP_15682163.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|353774586|gb|EHD55073.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|379559023|gb|EHZ24054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|379585439|gb|EHZ50295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|395573460|gb|EJG34050.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|395588912|gb|EJG49234.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
Length = 511
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|433605028|ref|YP_007037397.1| Cold-shock DEAD box protein A [Saccharothrix espanaensis DSM 44229]
gi|407882881|emb|CCH30524.1| Cold-shock DEAD box protein A [Saccharothrix espanaensis DSM 44229]
Length = 581
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 199/342 (58%), Gaps = 13/342 (3%)
Query: 77 WQHAQSAVDDYVAY-----DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLE 131
W+ + AV + A D+ D+ + L + +++ AL+ G + PIQ+ +
Sbjct: 7 WRTPRRAVAERSARLDAMTADAPDDDRTSFADLGLRPELLRALSGLGYEEPTPIQREAIP 66
Query: 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191
P GRD++G+A TGTGKT AF +P+L+++ + R P+ LVL PTRELA QV +
Sbjct: 67 PLTDGRDLLGQAATGTGKTAAFALPVLERMAEGGRTE---RAPMALVLVPTRELAVQVSE 123
Query: 192 EFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
H + + +YGG PI Q+R L+ GVD VV TPGR +D + R L L ++ V
Sbjct: 124 AVHRYGREIGARVLPIYGGQPIGRQLRVLEQGVDVVVATPGRAVDHLNRGTLKLEHLEVV 183
Query: 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309
VLDEAD+ML +GFAED++ IL P+ RQ+++FSATMP I L ++L +P+ + + +
Sbjct: 184 VLDEADEMLDMGFAEDLDAILAEAPEQRQTVLFSATMPGRIDRLARQHLTDPVRITISRE 243
Query: 310 SDQK-LADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKS 367
+ A + + KP+ +G+++ A IVF +T+ + D+L + +
Sbjct: 244 QPEPGEAPRVRQSAYVVPRAHKPAALGRVLDIEAPTA-AIVFCRTRDEVDQLTETLNGRG 302
Query: 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
Y E LHG ISQ QR+R ++ R+G ++L+ATDVAARGLDV
Sbjct: 303 YRAESLHGGISQEQRDRVMARLRNGTADLLVATDVAARGLDV 344
>gi|339486432|ref|YP_004700960.1| DEAD/DEAH box helicase [Pseudomonas putida S16]
gi|338837275|gb|AEJ12080.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida S16]
Length = 559
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 195/317 (61%), Gaps = 15/317 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+K
Sbjct: 8 FAALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA
Sbjct: 68 IDVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQ 336
Q+++FSAT+P IRS+ ++L+ P V + S + I + +K P+++
Sbjct: 182 QTVLFSATLPSSIRSIAERHLREPKHVKI--QSKTQTVTAIEQAHLMVHADQKIPAVLRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +
Sbjct: 240 LEVEEFDA--LIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297
Query: 396 ILIATDVAARGLDVPNV 412
I++ATDVAARGLDVP +
Sbjct: 298 IVVATDVAARGLDVPRI 314
>gi|450128837|ref|ZP_21869087.1| ATP-dependent RNA helicase [Streptococcus mutans U2A]
gi|449229216|gb|EMC28542.1| ATP-dependent RNA helicase [Streptococcus mutans U2A]
Length = 517
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|420153565|ref|ZP_14660520.1| DEAD/DEAH box helicase, partial [Actinomyces massiliensis F0489]
gi|394758926|gb|EJF41752.1| DEAD/DEAH box helicase, partial [Actinomyces massiliensis F0489]
Length = 528
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 141/369 (38%), Positives = 214/369 (57%), Gaps = 22/369 (5%)
Query: 61 EFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISK-----LDISQDIVAALA 115
E H + D + A + V D D + + + D++K L + ++ AALA
Sbjct: 29 EAHQEAHDADASGILHTAGAHAPVLDEATPDITDEGDAADLTKKTFADLGVEPELCAALA 88
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGR 170
GI+ FPIQ L A+ G+D+IG+A+TGTGKTL F +P+L + ++E
Sbjct: 89 GHGITHPFPIQALALPVALGGQDIIGQAKTGTGKTLGFALPLLMDTLGPGEDGWDEDPAS 148
Query: 171 GRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGT 228
G +P L++ PTRELAKQV +E +A ++ + VYGG Q+ AL G + VVGT
Sbjct: 149 G-SPQALIVLPTRELAKQVAEELTMAAAKRTVRIVQVYGGRAYEPQIEALSKGAEVVVGT 207
Query: 229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288
PGR+IDL+ R L+L+ V VVLDEAD+ML +GF DVE IL R +RQ+M+FSATMP
Sbjct: 208 PGRLIDLMDRGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTRTDRQTMLFSATMPG 267
Query: 289 WIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI----IGQLITEHAKG 344
+ +L +Y+ P + D+ G+++ ++ +Y ++ + I + A
Sbjct: 268 AVVALARRYMSKPTHIRAQDPGDE----GMTVTTVQQVVYRTHALNKVEVVSRILQAAGR 323
Query: 345 GKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403
G+ I+F +TKR R+A + A+ + LHGD+ Q RE+ L AFR+G+ ++L+ATDVA
Sbjct: 324 GRTIIFARTKRTCARVAEDLAARGFATAALHGDLGQGAREQALRAFRNGKVDVLVATDVA 383
Query: 404 ARGLDVPNV 412
ARG+DV +V
Sbjct: 384 ARGIDVDDV 392
>gi|385653332|ref|ZP_10047885.1| superfamily II DNA and RNA helicase, partial [Leucobacter
chromiiresistens JG 31]
Length = 608
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 201/331 (60%), Gaps = 23/331 (6%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
++ E + + L ++ +++ A+ G IQ A + ++G D++G A+TGTGKT AF
Sbjct: 13 TEGERITFADLGLAPEVLRAVTDVGYETPSAIQAATIPTLLEGADVVGLAQTGTGKTAAF 72
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTP 210
+PIL +I G+G P LVLAPTRELA QV + F A P + + VYGG
Sbjct: 73 ALPILSRITP-----GQG-VPQALVLAPTRELALQVCEAFESYAAHLPEVHLLPVYGGQA 126
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ AL GVD VVGTPGR++D +KR +L+L++++++VLDEAD+ML +GFAEDVE IL
Sbjct: 127 YGQQLSALRRGVDIVVGTPGRIMDHLKRGSLDLTQIKYLVLDEADEMLKMGFAEDVETIL 186
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
PQ +Q +FSATMP IR ++ +YL +P + + G + S T Y
Sbjct: 187 ADTPQEKQVALFSATMPAQIRRISQQYLNDPREIKIAGKTQTS--------STITQRYNV 238
Query: 331 PSIIGQL-----ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
S +L I E IVFT+T+ D++++A + A+ Y+ ++GDI Q+QRER
Sbjct: 239 VSYTQKLDALTRILEVEDFDAMIVFTRTRGDSEQVAEKLRARGYSAAAINGDIPQAQRER 298
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
T+ + +DG+ +IL+ATDVAARGLDV + V
Sbjct: 299 TVQSLKDGKLDILVATDVAARGLDVERISHV 329
>gi|423070020|ref|ZP_17058796.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
gi|355366341|gb|EHG14059.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
Length = 514
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 198/322 (61%), Gaps = 16/322 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ +S +++A + + G + PIQ+ + AM+G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNEFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------NTENPFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ+++FSATMP I+ + K++K+P V + + + + + Y I EK +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKDPTHVKIA--AKELTTELVDQYYIRVKENEKFDTM 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + + E +HGD+ Q +R R L F++G
Sbjct: 231 TRLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNGN 289
Query: 394 FNILIATDVAARGLDVPNVDLV 415
++L+ATDVAARGLD+ V V
Sbjct: 290 LDVLVATDVAARGLDISGVTHV 311
>gi|375099094|ref|ZP_09745357.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
gi|374659826|gb|EHR59704.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
Length = 552
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/362 (36%), Positives = 210/362 (58%), Gaps = 11/362 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+ K + ++L + DIV AL GI + F IQ L A++G D+IG+ARTGTGKTL
Sbjct: 16 DAGKPDNPTFAELGVHTDIVRALGDSGIERTFDIQALTLPLALRGEDVIGQARTGTGKTL 75
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGT 209
FG+P+L ++ + P LV+ PTREL QV ++ ++ L +YGG
Sbjct: 76 GFGVPLLQRLTLPGDG-----TPQALVVVPTRELCVQVHEDLTKAGKHLGVRVASIYGGR 130
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
P Q+++L GVD V+GTPGR++DL ++ L L +V +VLDEAD+ML +GF D+E +
Sbjct: 131 PYESQIKSLRDGVDVVIGTPGRLLDLAEQRHLVLGKVSTLVLDEADEMLDLGFLPDIERV 190
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
L +P RQ+M+FSATMP I +L +L P + + + + + Y+ + +
Sbjct: 191 LRMVPDERQTMLFSATMPGPILTLARTFLHQPTHIRAEDNEAGAVHERTTQYAYRSHSLD 250
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSA 388
KP ++ +++ + G ++FT+TKR A ++A +A + + +HGD+ Q RE+ L A
Sbjct: 251 KPELVAKVLQAEDR-GLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRA 309
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLD 446
FR G+ ++L+ATDVAARG+DV +V V E ++ + R GK+ V ++D
Sbjct: 310 FRSGKVDVLVATDVAARGIDVDDVTHVINYQTPEDEKTYVHRIGRTGRAGKTGVAITLVD 369
Query: 447 AD 448
D
Sbjct: 370 WD 371
>gi|336325995|ref|YP_004605961.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336101977|gb|AEI09797.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 786
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 203/336 (60%), Gaps = 13/336 (3%)
Query: 78 QHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
Q ++ + D + + +G L ++ +++ A+ + G PIQ+ + M+G
Sbjct: 97 QQEETPAEAKNTVDAAEQSDGPTFDNLGLTSEVLEAVKKVGFEAPSPIQEQTIPVLMEGN 156
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +PIL +I R+P LVLAPTRELA QV + F A
Sbjct: 157 DVVGLAQTGTGKTAAFALPILARIDPSK------RHPQALVLAPTRELALQVAESFESFA 210
Query: 198 PSLDTICV---YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
L I V YGG Q+ L G VVGTPGRVID + + +L++SE++F+VLDEA
Sbjct: 211 THLGGIHVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRVIDHLNKGSLDISELRFMVLDEA 270
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML++GF EDVE ILE P+++Q +FSATMP IR L+ +YL +P + + S Q+
Sbjct: 271 DEMLNMGFQEDVERILEDTPEDKQVALFSATMPAGIRRLSKQYLNDPQEITV--KSTQRT 328
Query: 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPL 373
++ I + + K + +++ E + I+F +TK + + LA + A+ +N +
Sbjct: 329 SENIEQDYLFVNHRNKLEALTRIL-EVTEFEAMIMFVRTKNETEELAERLRARGFNAAAI 387
Query: 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
+GDI+Q+QRERT+ +DGR +IL+ATDVAARGLDV
Sbjct: 388 NGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDV 423
>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase [Thermodesulfobium narugense DSM 14796]
gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 531
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 196/319 (61%), Gaps = 20/319 (6%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
++++S+D V AL G + IQK + MQG D+IG+A+TGTGKT AFGIPI+
Sbjct: 9 EIELSKDTVLALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIPIV---- 64
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDY 220
EK + R P LVL PTRELA QV +E + + L + +YGG I Q++AL
Sbjct: 65 ---EKTTKDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKN 121
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQS 279
G ++GTPGR+ID IKR L LS++ +VLDEAD+ML +GF ED+E I++ + +N Q+
Sbjct: 122 GAQVIIGTPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSIATSMYEKPSIIGQL 337
++FSATMP I +LT KY+KNP V + S ++L ++ Y A E
Sbjct: 182 LLFSATMPDPIMALTKKYMKNPKVVSI---SKEQLTVPLTDQFYCEAKDKLEALC----R 234
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
I E K I+F +TK+ D L ++ + Y+ E LHGD++Q+QR++ + +FR+ +
Sbjct: 235 ILETEDMDKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEV 294
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLD+ +V V
Sbjct: 295 LVATDVAARGLDISDVSHV 313
>gi|374337605|ref|YP_005094310.1| cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC
198]
gi|372283710|emb|CCF01907.1| Cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC
198]
Length = 526
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 133/318 (41%), Positives = 198/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++KNP V + + + D I Y I +K +
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMKNPEHVKVA--AKELTTDLIDQYYIRVKEQDKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLMDVDPP-ELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|415749990|ref|ZP_11477934.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
gi|381318284|gb|EIC59009.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
Length = 511
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++ + + G ++ PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLEEIEKAGFVEVSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|359150602|ref|ZP_09183433.1| ATP-dependent RNA helicase, partial [Streptomyces sp. S4]
Length = 599
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 133/346 (38%), Positives = 207/346 (59%), Gaps = 13/346 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L + + +V LA+ G++K FPIQ A + A+ G+D++GR RTG+GKTL+FG+P+
Sbjct: 74 GVTFASLGLPEGVVRKLAQNGVTKPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPL 133
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM 215
L + H + P ++L PTRELA QV L V GGT + +Q+
Sbjct: 134 LASLAG---GHTEKKKPRGVILTPTRELAMQVADALQPYGDVLGLRMKVVCGGTSMGNQI 190
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL+ GVD +V TPGR+ D+I R A +L ++ +LDEADQM +GF +V +L+++P+
Sbjct: 191 YALERGVDILVATPGRLRDIINRGACSLENIEIAILDEADQMSDLGFMPEVTELLDQVPE 250
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q M+FSATM I SL +YLKNP++ ++ D+ Q +S + + +K + G
Sbjct: 251 GGQRMLFSATMENEISSLVKRYLKNPVSHEV--DAAQGAVTTMSHHILIVKPRDKAPVTG 308
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRF 394
+ A+ G+ I+F +T+ ADR+A + +S + LHG ++Q R RTL+ F+DG
Sbjct: 309 AIA---ARKGRTIIFVRTQLGADRVAEQLRESGVKADALHGGMTQGARTRTLADFKDGHV 365
Query: 395 NILIATDVAARGLDVPNVDLVELV--VLERKEVQFLSTQISRPGKS 438
N+L+ATDVAARG+ V +DLV V + K+ S + +R G+S
Sbjct: 366 NVLVATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRS 411
>gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
Length = 537
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 205/362 (56%), Gaps = 13/362 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ I DIVAAL +GI FPIQ L A+ G D+IG+ARTGTGKTL FG+P+L +
Sbjct: 34 FADFGIHPDIVAALEEKGIVHPFPIQAMTLPVALSGHDIIGQARTGTGKTLGFGVPLLSR 93
Query: 161 IIKFNEKHGRG-----RNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
+ E P +V+ PTRELA QV + +A + +YGG
Sbjct: 94 VTAPGETSKAAVPAPEGKPQAMVVVPTRELAVQVASDLEAAAKKRGIRIAQIYGGRAFEP 153
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ L+ GV+ +VGTPGR+IDL R L+L+ V +VLDEAD+ML +GF DVE IL
Sbjct: 154 QVERLEKGVEVIVGTPGRIIDLATRGHLDLAYVGCLVLDEADEMLDLGFLPDVEKILAMT 213
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKP 331
P RQ+M+FSATMP + +L +Y+ P + + D S+ + A I + +K
Sbjct: 214 PGGRQTMLFSATMPGAVVTLARRYMTQPTHIRAMQDDASEAETASNIEQFVYRAHAMDKV 273
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
++ +++ + G I+F++TKR A +++ + ++ + PLHGD+ Q RE+ L AFR
Sbjct: 274 EMLARILQAKDR-GLTIIFSRTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAFR 332
Query: 391 DGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDAD 448
G+ ++L+ATDVAARG+DV +V V E ++ + R GK+ + ++D D
Sbjct: 333 SGKVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYVHRIGRTGRAGKTGIAVTLVDWD 392
Query: 449 LL 450
L
Sbjct: 393 DL 394
>gi|421745076|ref|ZP_16182944.1| DNA/RNA helicase, superfamily II, partial [Streptomyces sp. SM8]
gi|406686509|gb|EKC90662.1| DNA/RNA helicase, superfamily II, partial [Streptomyces sp. SM8]
Length = 569
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 209/349 (59%), Gaps = 19/349 (5%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L + + +V LA+ G++K FPIQ A + A+ G+D++GR RTG+GKTL+FG+P+
Sbjct: 74 GVTFASLGLPEGVVRKLAQNGVTKPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPL 133
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI-----CVYGGTPIS 212
L + H + P ++L PTRELA QV P D + V GGT +
Sbjct: 134 LASLAG---GHTEKKKPRGVILTPTRELAMQVADALQ---PYGDVLGLRMKVVCGGTSMG 187
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
+Q+ AL+ GVD +V TPGR+ D+I R A +L ++ +LDEADQM +GF +V +L++
Sbjct: 188 NQIYALERGVDILVATPGRLRDIINRGACSLENIEIAILDEADQMSDLGFMPEVTELLDQ 247
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P+ Q M+FSATM I SL +YLKNP++ ++ D+ Q +S + + +K
Sbjct: 248 VPEGGQRMLFSATMENEISSLVKRYLKNPVSHEV--DAAQGAVTTMSHHILIVKPRDKAP 305
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRD 391
+ G + A+ G+ I+F +T+ ADR+A + +S + LHG ++Q R RTL+ F+D
Sbjct: 306 VTGAIA---ARKGRTIIFVRTQLGADRVAEQLRESGVKADALHGGMTQGARTRTLADFKD 362
Query: 392 GRFNILIATDVAARGLDVPNVDLVELV--VLERKEVQFLSTQISRPGKS 438
G N+L+ATDVAARG+ V +DLV V + K+ S + +R G+S
Sbjct: 363 GHVNVLVATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRS 411
>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
Length = 561
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/346 (38%), Positives = 206/346 (59%), Gaps = 14/346 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L +L + + I+ A+A G + PIQ + M+GRD+IG+A+TGTGKT AFGIP
Sbjct: 2 ETLRFDELQLDERILRAVADMGFEEASPIQAQAIPVQMEGRDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISH 213
+L K+ + + + L PTRELA QV E A + + V YGG I
Sbjct: 62 LLQKV------DPKSKKLQAIALCPTRELAIQVADEIRRLAKYMHGVKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G ++GTPGRV+D ++R + + VV+DEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGTQIIIGTPGRVMDHMRRKTVKFDHIHTVVMDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P++RQ++MFSATMP I + +K+ K P+TV +V + ++ Y K +
Sbjct: 176 PEDRQTVMFSATMPQAIADIAHKFQKEPVTVKVV--KKELTVPKVTQYYYEVKPKTKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A +VF TK+ D L A+ + Y E LHGD+ Q QR+R +++FR+G
Sbjct: 234 MCRLLDMYAP-KLSVVFCNTKKGVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
R +IL+ATDVAARG+DV +V+ V L + + ++ +I R G++
Sbjct: 293 RTDILVATDVAARGIDVDDVEAVFNYDLPQDD-EYYVHRIGRTGRA 337
>gi|430746222|ref|YP_007205351.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430017942|gb|AGA29656.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 415
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/295 (42%), Positives = 185/295 (62%), Gaps = 12/295 (4%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
PIQ ++ A++GRD+IG+A+TGTGKT AFGIP+++ + RG+ P ++LAPTR
Sbjct: 36 PIQAELIPEALEGRDVIGQAKTGTGKTAAFGIPLIEML------EARGKGPQGIILAPTR 89
Query: 184 ELAKQVEKEFHESAPSLDT-IC-VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241
EL +Q+ E A D IC +YGG PI Q+RAL GVD +VGTPGRV+D I+R L
Sbjct: 90 ELVQQIVAELQTLADGQDVVICGIYGGEPIDKQLRALQRGVDLIVGTPGRVLDHIERRTL 149
Query: 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
L ++ VVLDEAD+ML +GF D+E IL ++P Q+++ SAT+ P IR L +Y+ P
Sbjct: 150 YLGDIYHVVLDEADRMLDIGFRPDIERILRKVPNPHQTLLLSATISPDIRKLAQRYMFEP 209
Query: 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA 361
+ ++L D+ D I Y + K ++ L+ + + +CIVFT+TKR A+RLA
Sbjct: 210 VELNL--SRDEPSVDSIKQYYVTVEHERKFDLLVHLL-QRDRPRQCIVFTRTKRGAERLA 266
Query: 362 HAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+ + +HGD++Q+ R R + FR+G +L+ATDV RG+DV ++ V
Sbjct: 267 DRLRGRIPGVATIHGDLAQTVRNRVMLGFRNGTIPVLVATDVVGRGIDVNDISHV 321
>gi|419521514|ref|ZP_14061109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
gi|379538814|gb|EHZ03994.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
Length = 524
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288122|ref|YP_005122663.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
3/99-5]
gi|384504137|ref|YP_005680807.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1002]
gi|384506229|ref|YP_005682898.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
C231]
gi|384508317|ref|YP_005684985.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
I19]
gi|385806992|ref|YP_005843389.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
267]
gi|387136078|ref|YP_005692058.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
42/02-A]
gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205685|gb|ADL10027.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
C231]
gi|302330237|gb|ADL20431.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1002]
gi|308275920|gb|ADO25819.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
I19]
gi|348606523|gb|AEP69796.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
42/02-A]
gi|371575411|gb|AEX39014.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
3/99-5]
gi|383804385|gb|AFH51464.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
267]
Length = 441
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 190/318 (59%), Gaps = 4/318 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IGRARTG GKTL FG+P+LD+
Sbjct: 10 FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA+QV ++ +A + VYGG P Q++ L
Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQVL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q
Sbjct: 130 TAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 190 TLLFSATMPGPVLTLARTFMSRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARAL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+FT+TKR A LA +A + + +HGD+ Q+ RE +L FR+GR +IL
Sbjct: 250 QAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRVDIL 308
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+ +V V
Sbjct: 309 VATDVAARGLDIDDVTHV 326
>gi|374335166|ref|YP_005091853.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
gi|372984853|gb|AEY01103.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
Length = 596
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 189/319 (59%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L ++ ++ AL G + IQ A + + GRD++G A+TGTGKT AF +P+L +
Sbjct: 10 FADLGLAPAVLQALTDAGYEQPSAIQAAAIPTLLTGRDVLGLAQTGTGKTAAFALPMLSR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRA 217
I G P LVLAPTRELA QV + F A + + +YGG Q+RA
Sbjct: 70 I------SGGNAYPQVLVLAPTRELAIQVAESFENYAKYQKDIRIVSIYGGQAYDSQIRA 123
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +DVE ILE P R
Sbjct: 124 LKRGVDIVVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPDTR 183
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q +FSATMPP I+ + KYLK+P V + + + A Y M ++ ++ +
Sbjct: 184 QIALFSATMPPAIQRVAQKYLKDPQEVR-IANKTRTNASIRQRYWFVRGMPKQEALCRLV 242
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
TE+ C+VF +T++DA+ LA M++ + CE LHGDI Q RE+ + ++GR N+
Sbjct: 243 ETENMDA--CLVFVRTRKDAEELAELMSREGHACEALHGDIPQKLREKVVDRLKNGRLNV 300
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDV ARGLDV + V
Sbjct: 301 LVATDVVARGLDVERISHV 319
>gi|452910044|ref|ZP_21958727.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
gi|452835004|gb|EME37802.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
Length = 606
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 198/331 (59%), Gaps = 7/331 (2%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A D +++D ++L I ++AAL G K PIQ+A + ++GRD++G A+TGTG
Sbjct: 5 APDQNTQDTTPTFAELGIDARVLAALEAIGYEKPSPIQEATIPVLLEGRDVVGMAQTGTG 64
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICV 205
KT AF +P L ++ + + +G + LVLAPTRELA QV + F A L+ + V
Sbjct: 65 KTAAFAVPALSRLAELADLNGPSTSTQVLVLAPTRELALQVGEAFASYAVQLEDFTVLPV 124
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG+ Q+ L G VVGTPGRVID +KR +L L ++Q++VLDEAD+ML +GFAED
Sbjct: 125 YGGSSYGPQLAGLRRGAQVVVGTPGRVIDHLKRGSLKLDDLQYLVLDEADEMLRMGFAED 184
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
VE IL + P+++Q +FSATMPP IR + +YL+NP + + + A I +
Sbjct: 185 VETILSQTPEDKQVALFSATMPPAIRKIAQRYLRNPEEISV--KAKTSTATNIRQRYLQV 242
Query: 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
K + +L+ G IVF +TK + +A + A+ + ++GDI Q RE+
Sbjct: 243 MGAHKLEAMTRLLEVEEHDG-IIVFVRTKAATEEVAEKLRARGHAATAINGDIPQQAREK 301
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
++ R G+ +IL+ATDVAARGLDV + LV
Sbjct: 302 SVEQLRSGKIDILVATDVAARGLDVERISLV 332
>gi|398848835|ref|ZP_10605629.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
gi|398246946|gb|EJN32419.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
Length = 561
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 195/317 (61%), Gaps = 15/317 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+K
Sbjct: 8 FAALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA
Sbjct: 68 IDVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQ 336
Q+++FSAT+P IRS+ ++L+ P V + S + I + +K P+++
Sbjct: 182 QTVLFSATLPSSIRSIAERHLREPKHVKI--QSKTQTVTAIDQAHLMVHADQKIPAVLRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +
Sbjct: 240 LEVEEFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297
Query: 396 ILIATDVAARGLDVPNV 412
I++ATDVAARGLDVP +
Sbjct: 298 IVVATDVAARGLDVPRI 314
>gi|392960700|ref|ZP_10326165.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421054542|ref|ZP_15517510.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421057795|ref|ZP_15520561.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
gi|421065831|ref|ZP_15527523.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421071404|ref|ZP_15532524.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392440900|gb|EIW18560.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392447320|gb|EIW24574.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392454597|gb|EIW31419.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|392458035|gb|EIW34626.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|392462136|gb|EIW38252.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B3]
Length = 526
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 196/313 (62%), Gaps = 20/313 (6%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ +++A+A G + PIQ + ++G D+IG+A+TGTGKT AFGIP ++KI
Sbjct: 12 LSKKLLSAIAEMGFEEPSPIQNQTIPLVLEGHDVIGQAQTGTGKTAAFGIPAIEKI---- 67
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVD 223
R LVL PTRELA QV +E + + T+ +YGG PI Q++AL GV
Sbjct: 68 ---ADSRQIQVLVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQPIDRQIKALRMGVH 124
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMF 282
V+GTPGR++D I+R + L V+ ++LDEAD+ML +GF ED+E I++ +P + RQ+++F
Sbjct: 125 VVIGTPGRLLDHIRRKTIKLDAVKTLILDEADEMLDMGFVEDIETIMQEVPVEGRQTLLF 184
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--ITE 340
SATMP I +L KY+ NP T+ + + +Q +++ I YE + L + +
Sbjct: 185 SATMPGPIATLARKYMNNPKTISI--NREQ-----LTVPLIDQIYYETREKLEALCRVLD 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
GK I+F +TKR D L ++ + Y + LHGD+SQ+QR+R + FRDG+ +LIA
Sbjct: 238 VETTGKSIIFCRTKRGVDDLVVSLQGRGYMADGLHGDLSQAQRDRVMKKFRDGKLELLIA 297
Query: 400 TDVAARGLDVPNV 412
TDVAARG+D+ ++
Sbjct: 298 TDVAARGIDIDDI 310
>gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase [Isosphaera pallida ATCC 43644]
gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC
43644]
Length = 422
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 216/392 (55%), Gaps = 23/392 (5%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
SS ++L +S+ +AAL PIQ A + PA++GRD+IG+A+TGTGKT A
Sbjct: 7 SSPTPPASFAELGLSRLTLAALKTVNYRVPSPIQAAFIPPALEGRDVIGQAKTGTGKTAA 66
Query: 153 FGIPILDKIIKFNEKHGRGR-NPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGT 209
F +P++ E H G+ P ++LAPTREL +Q+ EF A D + +YGG
Sbjct: 67 FSLPLI-------EMHEPGQPGPQAIILAPTRELVQQICGEFERLARGRDLVVRGIYGGE 119
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
PI Q+R+L GVD VVGTPGRVID ++R ++L V VVLDEAD+ML +GF D+E I
Sbjct: 120 PIERQLRSLAKGVDVVVGTPGRVIDHLQRGTMSLEGVYHVVLDEADRMLDIGFRPDIERI 179
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329
L ++PQ Q+++ SAT+ P +R L +Y+ P+ ++L D+ + I I +
Sbjct: 180 LRKVPQPHQTLLLSATLSPEVRRLAARYMHEPVELNL--SRDEPSVEKIVQKYIPVD-HN 236
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY-NCEPLHGDISQSQRERTLSA 388
+ + + E K +CIVF +TKR AD+LA +A+ Y +HGD+ Q+ R R +
Sbjct: 237 RKMELLLHLLELEKPRQCIVFCRTKRGADKLAQRLARRYPGVATIHGDLPQTARNRVMRG 296
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLST--QISRPGKSRVLSEMLD 446
FRDG IL+ATDV RG+DV + V + +L + R GK V +
Sbjct: 297 FRDGSIPILVATDVVGRGIDVEEISHVVNYDIPDDPENYLHRIGRTGRMGKDGVAYTFVG 356
Query: 447 ADLLSSQGSPLKEVETC---TMTWVAGLGMEV 475
D +G PL +E T+ V G EV
Sbjct: 357 PD----EGIPLTNIEVLINKTLERVVIPGFEV 384
>gi|400290741|ref|ZP_10792768.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921532|gb|EJN94349.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
Length = 517
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++++DI++A+ + G ++ PIQ+ + A+ G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLTEDILSAVEKAGFTEPSPIQELTIPLALAGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI I N LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKINIASNLVQ-------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 SRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+LI + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLI-DVEQPDLAIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|421076010|ref|ZP_15537012.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392525869|gb|EIW48993.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 526
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 196/313 (62%), Gaps = 20/313 (6%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ +++A+A G + PIQ + ++G D+IG+A+TGTGKT AFGIP ++KI
Sbjct: 12 LSKKLLSAIAEMGFEEPSPIQNQTIPLVLEGHDVIGQAQTGTGKTAAFGIPAIEKI---- 67
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVD 223
R LVL PTRELA QV +E + + T+ +YGG PI Q++AL GV
Sbjct: 68 ---ADSRQIQVLVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQPIDRQIKALRMGVH 124
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMF 282
V+GTPGR++D I+R + L V+ ++LDEAD+ML +GF ED+E I++ +P + RQ+++F
Sbjct: 125 VVIGTPGRLLDHIRRKTIKLDAVKTLILDEADEMLDMGFVEDIETIMQEVPVEGRQTLLF 184
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--ITE 340
SATMP I +L KY+ NP T+ + + +Q +++ I YE + L + +
Sbjct: 185 SATMPGPIATLARKYMNNPKTISI--NREQ-----LTVPLIDQIYYETREKLEALCRVLD 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
GK I+F +TKR D L ++ + Y + LHGD+SQ+QR+R + FRDG+ +LIA
Sbjct: 238 VETTGKSIIFCRTKRGVDDLVVSLQGRGYMADGLHGDLSQAQRDRVMKKFRDGKLELLIA 297
Query: 400 TDVAARGLDVPNV 412
TDVAARG+D+ ++
Sbjct: 298 TDVAARGIDIDDI 310
>gi|296138846|ref|YP_003646089.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296026980|gb|ADG77750.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 536
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 192/331 (58%), Gaps = 20/331 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + Q IV AL +RGI + F IQ+ L A+ G D+IG+ARTG GKT FG+P+LD+
Sbjct: 38 FAELGVDQGIVDALGKRGIERTFAIQELTLPLALAGNDLIGQARTGMGKTYGFGVPLLDR 97
Query: 161 IIK-----FNEKHGRGRN--PLCLVLAPTRELAKQVEKEFHESAPS-----------LDT 202
++ E R + P L++ PTREL QV + +++ L
Sbjct: 98 LVTQARADVGEDGLRALDGTPRALIIVPTRELCVQVTDDLAQASDGVRVQTTKGERDLKI 157
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+YGG P Q+ AL GVD VVGTPGR++DL + L L ++Q +VLDEAD+ML +GF
Sbjct: 158 TSIYGGRPYEAQIEALQKGVDVVVGTPGRLLDLANQGHLVLGKIQILVLDEADEMLDLGF 217
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322
D+E IL +P +RQ+M+FSATMP I +L +LK P V D + + + Y
Sbjct: 218 LPDIERILTMVPTDRQTMLFSATMPGPIITLARTFLKQPTHVRAEHHDDSAVHERTTQYV 277
Query: 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQ 381
+K ++ +++ +G ++FT+TKR A ++A + + + +HGD+ Q
Sbjct: 278 YRAHALDKTELVAKVLQAQGRGA-TMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQVA 336
Query: 382 RERTLSAFRDGRFNILIATDVAARGLDVPNV 412
RE+ L FRDG ++L+ATDVAARG+D+ +V
Sbjct: 337 REKALGKFRDGSIDVLVATDVAARGIDIDDV 367
>gi|417687029|ref|ZP_12336303.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|418160286|ref|ZP_12796985.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|353822019|gb|EHE02195.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
Length = 524
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATD+AARGLD+ V
Sbjct: 292 VLVATDIAARGLDISGV 308
>gi|385262989|ref|ZP_10041086.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
gi|385188964|gb|EIF36434.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
Length = 525
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI H LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------HTEDATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|384510410|ref|YP_005689988.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
PAT10]
gi|341824349|gb|AEK91870.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
PAT10]
Length = 441
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 190/318 (59%), Gaps = 4/318 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IGRARTG GKTL FG+P+LD+
Sbjct: 10 FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA+QV ++ +A + VYGG P Q++ L
Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQVL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q
Sbjct: 130 TAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 190 TLLFSATMPGPVLTLARTFMSRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARAL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+FT+TKR A LA +A + + +HGD+ Q+ RE +L FR+GR +IL
Sbjct: 250 QAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRVDIL 308
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+ +V V
Sbjct: 309 VATDVAARGLDIDDVTHV 326
>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase, DEAD-box family [Streptococcus mutans
UA159]
gi|387786557|ref|YP_006251653.1| ATP-dependent RNA helicase [Streptococcus mutans LJ23]
gi|449868045|ref|ZP_21779892.1| ATP-dependent RNA helicase [Streptococcus mutans U2B]
gi|449873594|ref|ZP_21781776.1| ATP-dependent RNA helicase [Streptococcus mutans 8ID3]
gi|449900440|ref|ZP_21791449.1| ATP-dependent RNA helicase [Streptococcus mutans R221]
gi|449905661|ref|ZP_21793153.1| ATP-dependent RNA helicase [Streptococcus mutans M230]
gi|449987637|ref|ZP_21820439.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM2]
gi|450054177|ref|ZP_21841677.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM1]
gi|450064682|ref|ZP_21845431.1| ATP-dependent RNA helicase [Streptococcus mutans NLML5]
gi|450074791|ref|ZP_21849420.1| ATP-dependent RNA helicase [Streptococcus mutans M2A]
gi|450084208|ref|ZP_21853214.1| ATP-dependent RNA helicase [Streptococcus mutans N66]
gi|450103709|ref|ZP_21859410.1| ATP-dependent RNA helicase [Streptococcus mutans SF1]
gi|450108165|ref|ZP_21861307.1| ATP-dependent RNA helicase [Streptococcus mutans SF14]
gi|450161259|ref|ZP_21880452.1| ATP-dependent RNA helicase [Streptococcus mutans 66-2A]
gi|450172283|ref|ZP_21884450.1| ATP-dependent RNA helicase [Streptococcus mutans SM4]
gi|450178263|ref|ZP_21886619.1| ATP-dependent RNA helicase [Streptococcus mutans SM1]
gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
mutans UA159]
gi|379132958|dbj|BAL69710.1| ATP-dependent RNA helicase [Streptococcus mutans LJ23]
gi|449153879|gb|EMB57510.1| ATP-dependent RNA helicase [Streptococcus mutans 8ID3]
gi|449175876|gb|EMB78251.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM2]
gi|449197934|gb|EMB99072.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM1]
gi|449203267|gb|EMC04138.1| ATP-dependent RNA helicase [Streptococcus mutans NLML5]
gi|449208651|gb|EMC09229.1| ATP-dependent RNA helicase [Streptococcus mutans M2A]
gi|449212021|gb|EMC12405.1| ATP-dependent RNA helicase [Streptococcus mutans N66]
gi|449217050|gb|EMC17127.1| ATP-dependent RNA helicase [Streptococcus mutans SF1]
gi|449220963|gb|EMC20781.1| ATP-dependent RNA helicase [Streptococcus mutans SF14]
gi|449238898|gb|EMC37638.1| ATP-dependent RNA helicase [Streptococcus mutans 66-2A]
gi|449242989|gb|EMC41471.1| ATP-dependent RNA helicase [Streptococcus mutans SM1]
gi|449243022|gb|EMC41497.1| ATP-dependent RNA helicase [Streptococcus mutans SM4]
gi|449257367|gb|EMC55046.1| ATP-dependent RNA helicase [Streptococcus mutans R221]
gi|449258022|gb|EMC55626.1| ATP-dependent RNA helicase [Streptococcus mutans M230]
gi|449263316|gb|EMC60715.1| ATP-dependent RNA helicase [Streptococcus mutans U2B]
Length = 517
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|450112586|ref|ZP_21863225.1| ATP-dependent RNA helicase [Streptococcus mutans SM6]
gi|449221937|gb|EMC21684.1| ATP-dependent RNA helicase [Streptococcus mutans SM6]
Length = 517
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|450037665|ref|ZP_21835841.1| ATP-dependent RNA helicase [Streptococcus mutans M21]
gi|449192015|gb|EMB93458.1| ATP-dependent RNA helicase [Streptococcus mutans M21]
Length = 517
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|350569165|ref|ZP_08937561.1| ATP-dependent RNA helicase DeaD [Propionibacterium avidum ATCC
25577]
gi|348659983|gb|EGY76693.1| ATP-dependent RNA helicase DeaD [Propionibacterium avidum ATCC
25577]
Length = 541
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 189/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + ++QG D+IG+ARTGTGKTLAFGI +L +
Sbjct: 27 FADLGVREDICQALEGVGIVSPFPIQAMSIPISIQGTDLIGQARTGTGKTLAFGITVLQR 86
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
II + E +GR P LV+ PTRELA QV K+ +A + VYGG
Sbjct: 87 IILPGDDDWEEFEHKGR-PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYEP 145
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 146 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 205
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L P+ V G Q + +K +
Sbjct: 206 PTSRQTMLFSATMPAPIMALARSQLNRPVHVRAEGADAQATVPDTQQFVYQAHPMDKIEV 265
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RLA + + + +HGD++Q RE+ L FR G
Sbjct: 266 IGRIL-QSRDVEKVIIFCRTKRTCQRLADDLDDRGFKARAIHGDLTQVAREKALKKFRSG 324
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 325 DATILVATDVAARGIDVTGVSHV 347
>gi|383313717|ref|YP_005374572.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
P54B96]
gi|380869218|gb|AFF21692.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
P54B96]
Length = 442
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 189/315 (60%), Gaps = 4/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IGRARTG GKTL FG+P+LD+
Sbjct: 10 FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA+QV ++ +A + VYGG P Q++ L
Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQVL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q
Sbjct: 130 TAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 190 TLLFSATMPGPVLTLARTFMSRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARAL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+FT+TKR A LA +A + + +HGD+ Q+ RE +L FR+GR +IL
Sbjct: 250 QAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRVDIL 308
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARGLD+ +V
Sbjct: 309 VATDVAARGLDIDDV 323
>gi|383830775|ref|ZP_09985864.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383463428|gb|EID55518.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 588
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 191/314 (60%), Gaps = 9/314 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L + +++ AL+ G + PIQ A + + G D++G+A TGTGKT AF +P+L
Sbjct: 37 EFGTLGLRPELLRALSDLGYEEPTPIQMAAIPALLDGADVVGQAATGTGKTAAFSLPVLH 96
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRA 217
++ + R P LVL PTRELA QV + + L + VYGG P+ Q+R+
Sbjct: 97 RLADLD----RNGKPSALVLVPTRELAAQVCEAMYRYGRHLGIRVVPVYGGQPMGRQLRS 152
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ GVD VV TPGR +D + R +L+LS+++ VVLDEAD+ML +GFAED++ IL++ P +R
Sbjct: 153 LETGVDVVVATPGRALDHLSRGSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDQTPTDR 212
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q+M+FSATMPP I + +YL+ P ++L +S A ++ + KP+ +G+
Sbjct: 213 QTMLFSATMPPRISGMVRRYLREPRRIELTRAESMSGDAAAVTQVAYVVPRGHKPAALGR 272
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ A +VF +T+ + DRL M + Y E LHG + QSQR R + R G +
Sbjct: 273 VLDIEAPEA-TVVFCRTREEVDRLTEIMNGRGYRAEALHGGMDQSQRNRVVGRLRAGTAD 331
Query: 396 ILIATDVAARGLDV 409
+++ATDVAARGLD+
Sbjct: 332 LVVATDVAARGLDI 345
>gi|397649329|ref|YP_006489856.1| ATP-dependent RNA helicase [Streptococcus mutans GS-5]
gi|449878432|ref|ZP_21783625.1| ATP-dependent RNA helicase [Streptococcus mutans S1B]
gi|449895693|ref|ZP_21789519.1| ATP-dependent RNA helicase [Streptococcus mutans SF12]
gi|449917524|ref|ZP_21797265.1| ATP-dependent RNA helicase [Streptococcus mutans 15JP3]
gi|449938016|ref|ZP_21804845.1| ATP-dependent RNA helicase [Streptococcus mutans 2ST1]
gi|449945061|ref|ZP_21806953.1| ATP-dependent RNA helicase [Streptococcus mutans 11A1]
gi|449966513|ref|ZP_21812374.1| ATP-dependent RNA helicase [Streptococcus mutans 15VF2]
gi|449977205|ref|ZP_21816455.1| ATP-dependent RNA helicase [Streptococcus mutans 11VS1]
gi|449980880|ref|ZP_21817468.1| ATP-dependent RNA helicase [Streptococcus mutans 5SM3]
gi|449992425|ref|ZP_21822308.1| ATP-dependent RNA helicase [Streptococcus mutans NVAB]
gi|449998174|ref|ZP_21824217.1| ATP-dependent RNA helicase [Streptococcus mutans A9]
gi|450011428|ref|ZP_21829171.1| ATP-dependent RNA helicase [Streptococcus mutans A19]
gi|450026596|ref|ZP_21831935.1| ATP-dependent RNA helicase [Streptococcus mutans U138]
gi|450078617|ref|ZP_21851083.1| ATP-dependent RNA helicase [Streptococcus mutans N3209]
gi|450116641|ref|ZP_21864588.1| ATP-dependent RNA helicase [Streptococcus mutans ST1]
gi|450156792|ref|ZP_21878776.1| ATP-dependent RNA helicase [Streptococcus mutans 21]
gi|450183346|ref|ZP_21888598.1| ATP-dependent RNA helicase [Streptococcus mutans 24]
gi|392602898|gb|AFM81062.1| ATP-dependent RNA helicase [Streptococcus mutans GS-5]
gi|449148200|gb|EMB52105.1| ATP-dependent RNA helicase [Streptococcus mutans 11A1]
gi|449154166|gb|EMB57774.1| ATP-dependent RNA helicase [Streptococcus mutans 15JP3]
gi|449163543|gb|EMB66645.1| ATP-dependent RNA helicase [Streptococcus mutans 2ST1]
gi|449170036|gb|EMB72776.1| ATP-dependent RNA helicase [Streptococcus mutans 15VF2]
gi|449174867|gb|EMB77327.1| ATP-dependent RNA helicase [Streptococcus mutans 11VS1]
gi|449176330|gb|EMB78682.1| ATP-dependent RNA helicase [Streptococcus mutans 5SM3]
gi|449179705|gb|EMB81898.1| ATP-dependent RNA helicase [Streptococcus mutans NVAB]
gi|449181162|gb|EMB83284.1| ATP-dependent RNA helicase [Streptococcus mutans A9]
gi|449189536|gb|EMB91191.1| ATP-dependent RNA helicase [Streptococcus mutans A19]
gi|449189635|gb|EMB91281.1| ATP-dependent RNA helicase [Streptococcus mutans U138]
gi|449209834|gb|EMC10332.1| ATP-dependent RNA helicase [Streptococcus mutans N3209]
gi|449226812|gb|EMC26299.1| ATP-dependent RNA helicase [Streptococcus mutans ST1]
gi|449235283|gb|EMC34247.1| ATP-dependent RNA helicase [Streptococcus mutans 21]
gi|449243483|gb|EMC41906.1| ATP-dependent RNA helicase [Streptococcus mutans 24]
gi|449249495|gb|EMC47615.1| ATP-dependent RNA helicase [Streptococcus mutans S1B]
gi|449254168|gb|EMC52091.1| ATP-dependent RNA helicase [Streptococcus mutans SF12]
Length = 517
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|449952218|ref|ZP_21808893.1| ATP-dependent RNA helicase [Streptococcus mutans 11SSST2]
gi|449165426|gb|EMB68434.1| ATP-dependent RNA helicase [Streptococcus mutans 11SSST2]
Length = 517
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|422518910|ref|ZP_16594978.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|313771958|gb|EFS37924.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
Length = 564
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 141/323 (43%), Positives = 191/323 (59%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 55 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 115 ITLPGDEGWGELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLAVYGGVGYES 173
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 234 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 293
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + A+ + +HGD++Q RE+ L FR G
Sbjct: 294 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDARGFKPRAIHGDLTQVAREKALKKFRHG 352
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 353 EATILVATDVAARGIDVTGVSHV 375
>gi|450121873|ref|ZP_21866488.1| ATP-dependent RNA helicase [Streptococcus mutans ST6]
gi|449228714|gb|EMC28070.1| ATP-dependent RNA helicase [Streptococcus mutans ST6]
Length = 517
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|26988598|ref|NP_744023.1| DEAD/DEAH box helicase [Pseudomonas putida KT2440]
gi|148549053|ref|YP_001269155.1| DEAD/DEAH box helicase [Pseudomonas putida F1]
gi|386013264|ref|YP_005931541.1| DEAD/DEAH box helicase [Pseudomonas putida BIRD-1]
gi|395444724|ref|YP_006384977.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida ND6]
gi|397693274|ref|YP_006531154.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida DOT-T1E]
gi|421522357|ref|ZP_15968999.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
gi|24983373|gb|AAN67487.1|AE016375_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
KT2440]
gi|148513111|gb|ABQ79971.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
gi|313499970|gb|ADR61336.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
gi|388558721|gb|AFK67862.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida ND6]
gi|397330004|gb|AFO46363.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida DOT-T1E]
gi|402753976|gb|EJX14468.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
Length = 559
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 133/317 (41%), Positives = 194/317 (61%), Gaps = 15/317 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+K
Sbjct: 8 FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA
Sbjct: 68 IDVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQ 336
Q+++FSAT+P IRS+ ++L+ P V + + + I + +K P+++
Sbjct: 182 QTVLFSATLPSSIRSIAERHLREPKHVKI--QTKTQTVTAIEQAHLMVHADQKIPAVLRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +
Sbjct: 240 LEVEEFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297
Query: 396 ILIATDVAARGLDVPNV 412
I++ATDVAARGLDVP +
Sbjct: 298 IVVATDVAARGLDVPRI 314
>gi|450003648|ref|ZP_21826168.1| ATP-dependent RNA helicase [Streptococcus mutans N29]
gi|449182133|gb|EMB84176.1| ATP-dependent RNA helicase [Streptococcus mutans N29]
Length = 517
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|449921723|ref|ZP_21799071.1| ATP-dependent RNA helicase [Streptococcus mutans 1SM1]
gi|449156658|gb|EMB60119.1| ATP-dependent RNA helicase [Streptococcus mutans 1SM1]
Length = 517
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
Length = 424
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/317 (41%), Positives = 192/317 (60%), Gaps = 8/317 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +I AL GI F IQ+ L A+ G D+IG+ARTG GKT FG+P+LD+
Sbjct: 10 FTELGVAAEITDALDALGIRHTFAIQEYTLPIALDGHDLIGQARTGMGKTYGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA QV ++ +A +L YGGTP Q+ AL
Sbjct: 70 VFDSADIEEIDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYGGTPYEEQIDAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ GVD VVGTPGR++DL +R AL L +V +VLDEAD+ML +GF D+E I+ L Q
Sbjct: 130 ETGVDVVVGTPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIEKIMRALTHKHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY--EKPSIIGQ 336
+M+FSATMP I +L +L P V + +S A + I + +K ++ +
Sbjct: 190 TMLFSATMPGPILTLARSFLDKP--VHIRAESADSAATHATTRQIVFQAHRMDKEAVTAR 247
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ + GK I+F +TKR A ++A + A+ + +HGD+ Q RER+L+AFR G+ +
Sbjct: 248 ILQARGR-GKTIIFARTKRTAAQVAEDLAARGFTVGSVHGDMGQPARERSLNAFRSGKID 306
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARG+D+ +V
Sbjct: 307 ILVATDVAARGIDIDDV 323
>gi|424762589|ref|ZP_18190093.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1337RF]
gi|431757804|ref|ZP_19546433.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
gi|402424479|gb|EJV56656.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
TX1337RF]
gi|430618309|gb|ELB55156.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
Length = 503
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 198/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI +E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRHELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++K+P V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKSPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
gi|345893680|ref|ZP_08844473.1| hypothetical protein HMPREF1022_03133 [Desulfovibrio sp.
6_1_46AFAA]
gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
gi|345045934|gb|EGW49832.1| hypothetical protein HMPREF1022_03133 [Desulfovibrio sp.
6_1_46AFAA]
Length = 593
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 188/319 (58%), Gaps = 14/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+L +SQD++ A+ G + PIQ + + GRD +G+A+TGTGKT AFG+PIL+K
Sbjct: 5 FEELGLSQDLLDAVKDMGFEEPSPIQVLAVPALLAGRDAVGQAQTGTGKTAAFGLPILEK 64
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRA 217
+I G+ LVL PTRELA QV +E + A + + VYGG I Q RA
Sbjct: 65 VIS-------GKGVQALVLCPTRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFRA 117
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR+ID ++R L L EV VVLDEAD+ML +GF ED+E ILER P
Sbjct: 118 LAKGAQVVVGTPGRIIDHLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDGC 177
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q ++FSATMPP IR L+ ++L+ P + + A + Y + Y+K + ++
Sbjct: 178 QRILFSATMPPPIRELSKRFLREPEMLTIAHKMLTIPAIEQTYYEVRP--YQKMDALCRV 235
Query: 338 ITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ K +VF TKR D + H + Y + LHGD++Q+QR+R + FR I
Sbjct: 236 LDSQGF-RKALVFCSTKRGVDEVTTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLEI 294
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARG+DV +VD V
Sbjct: 295 LVATDVAARGIDVDDVDAV 313
>gi|449910781|ref|ZP_21794880.1| ATP-dependent RNA helicase [Streptococcus mutans OMZ175]
gi|449259079|gb|EMC56625.1| ATP-dependent RNA helicase [Streptococcus mutans OMZ175]
Length = 517
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|167032455|ref|YP_001667686.1| DEAD/DEAH box helicase [Pseudomonas putida GB-1]
gi|166858943|gb|ABY97350.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
Length = 560
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 133/317 (41%), Positives = 194/317 (61%), Gaps = 15/317 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+K
Sbjct: 8 FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA
Sbjct: 68 IDVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQ 336
Q+++FSAT+P IRS+ ++L+ P V + + + I + +K P+++
Sbjct: 182 QTVLFSATLPSSIRSIAERHLREPKHVKI--QTKTQTVTAIEQAHLMVHADQKIPAVLRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +
Sbjct: 240 LEVEEFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297
Query: 396 ILIATDVAARGLDVPNV 412
I++ATDVAARGLDVP +
Sbjct: 298 IVVATDVAARGLDVPRI 314
>gi|343510603|ref|ZP_08747826.1| cold-shock DEAD-box protein A [Vibrio scophthalmi LMG 19158]
gi|342801572|gb|EGU37032.1| cold-shock DEAD-box protein A [Vibrio scophthalmi LMG 19158]
Length = 679
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 191/321 (59%), Gaps = 13/321 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S+L ++ I++AL G PIQ + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSELALNDAILSALDSMGFVSPTPIQAEAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
P+L+KI R P +VLAPTRELA QV E + L + +YGGT I
Sbjct: 63 PLLNKIDLAQ------RKPQAVVLAPTRELAIQVAAEMKNLGRNISGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G +VGTPGRV DLI R+ L+L EV +LDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHVIVGTPGRVQDLINRDRLHLDEVNTFILDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P+ Q ++FSATMPP ++++ ++L+ P+ VD+ G + D + EK
Sbjct: 177 APETAQRVLFSATMPPMLKNIVERFLREPVMVDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKT 293
Query: 392 GRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 294 GVIDILVATDVVARGLDVPRI 314
>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase [Rhizobium etli CFN 42]
gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
Length = 560
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 200/329 (60%), Gaps = 16/329 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 24 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 83
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
K++ +E+ R L+LAPTREL Q+ K+F +P L V GG I+ Q
Sbjct: 84 KLLA-DERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSP-LRINVVVGGVSINKQQL 141
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+
Sbjct: 142 QLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKK 201
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++
Sbjct: 202 RQTMLFSATMPKAIADLAGEYLVDPVKVEVT--PPGKAADKVEQYVHFVGGKNDKTELLR 259
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 260 KSLTENPD-GRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSI 318
Query: 395 NILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 319 KTLIATDVAARGIDIPAVSHVYNYDLPEV 347
>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
Length = 523
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
Length = 527
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 198/320 (61%), Gaps = 14/320 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + S L++ + ++ A+ G + IQ + + G DMIG+A+TGTGKTLAFG P
Sbjct: 2 ENIKFSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L +I ++ LVL PTRELA QV E A T + VYGG PI Q
Sbjct: 62 VLSQIESSDKIS-------ALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQ 114
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+++L GVD VVGTPGR++D IKRN L+LS V F+VLDE+D+ML++GF +D+E I++ L
Sbjct: 115 IKSLRRGVDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLN 174
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSI 333
++RQ+++FSATMP I L +KY+KN + + +V +S + I Y ++
Sbjct: 175 KDRQTLLFSATMPKEIAKLASKYMKNEVKHIKIVKNS--LTVEKIKQYYYEVKHKDRFES 232
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + + I+F +TKR D L +M A+ YN E +HGD+ Q+QR TL F++G
Sbjct: 233 LCRIL-DIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEG 291
Query: 393 RFNILIATDVAARGLDVPNV 412
+ L+ATDVAARG+DV +V
Sbjct: 292 TLDFLVATDVAARGIDVDDV 311
>gi|404450977|ref|ZP_11015952.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403763394|gb|EJZ24353.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 578
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 204/348 (58%), Gaps = 22/348 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L S L IS +I+ A+ G ++ IQ + ++G+D+IG+A+TGTGKT AFGIPI+
Sbjct: 5 LTFSDLGISAEILRAVEEMGYTQPSTIQSQSIPFMLEGKDVIGQAQTGTGKTAAFGIPII 64
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
D + K P L+L PTRELA QVE E + + + C+YGG I Q+
Sbjct: 65 DNVDPAINK------PQALILCPTRELAVQVEGEIVKLSKFKRGISSTCIYGGEAIDRQI 118
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R+L GV VVGTPGR++D I R L L V+ +VLDEAD+ML +GF ED+E IL P+
Sbjct: 119 RSLKKGVQIVVGTPGRIMDHIDRGTLKLDLVRIIVLDEADEMLDMGFREDIESILGDCPE 178
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSII 334
RQ++ FSATMP I LT KY NP V + L +++ +I + +E KPS+
Sbjct: 179 ERQTVFFSATMPKPILELTKKYQDNPEIVRV-------LRKELTVENITQNFFEVKPSLK 231
Query: 335 GQLITEHAKGGK---CIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+L++ + +VF TKR D + + A+ E LHGD+SQ+QR + ++ FR
Sbjct: 232 MELMSRLMHLNQYALSVVFCNTKRVTDEVTEELVARGIMAEALHGDLSQAQRTKVMNKFR 291
Query: 391 DGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
G ++L+ATDVAARG+DV NV+ V L E ++ +I R G++
Sbjct: 292 KGHVSVLVATDVAARGIDVDNVEAVFNFDLPLDEENYVH-RIGRTGRA 338
>gi|354616053|ref|ZP_09033745.1| DEAD/DEAH box helicase domain protein, partial [Saccharomonospora
paurometabolica YIM 90007]
gi|353219600|gb|EHB84147.1| DEAD/DEAH box helicase domain protein, partial [Saccharomonospora
paurometabolica YIM 90007]
Length = 471
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 193/320 (60%), Gaps = 9/320 (2%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ ++L + +DIV AL GI + F IQ L A+ G D+IG+ARTG GKTL FG+
Sbjct: 9 DDNPTFAELGVHEDIVCALQDTGIERTFAIQSLTLPLALAGDDVIGQARTGMGKTLGFGV 68
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISH 213
P+L ++ G G P LV+ PTREL QV K+ E+ L T +YGG P
Sbjct: 69 PLLQRL----SLPGDG-TPQALVVVPTRELCVQVAKDLTEAGAHLGVRTASIYGGRPYEA 123
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ L GVD V+GTPGR++DL ++ L L +V +VLDEAD+ML +GF D+E IL +
Sbjct: 124 QIETLQQGVDVVIGTPGRLLDLAEQQRLVLGKVGTLVLDEADEMLDLGFLPDIERILRMV 183
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ+M+FSATMP I +L +L P + + + + + + + +KP +
Sbjct: 184 PEKRQTMLFSATMPGPIINLARTFLHQPTHIRAEENDEGAIHERTRQFVYRSHSLDKPEL 243
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + G ++FT+TKR A ++A +A + + +HGD+ Q RE+ L AFR G
Sbjct: 244 VAKVLQAEGR-GLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRAFRSG 302
Query: 393 RFNILIATDVAARGLDVPNV 412
+ ++L+ATDVAARG+DV +V
Sbjct: 303 KIDVLVATDVAARGIDVEDV 322
>gi|284033244|ref|YP_003383175.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
DSM 17836]
gi|283812537|gb|ADB34376.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
Length = 815
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 191/315 (60%), Gaps = 10/315 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----- 163
+I AL R I + FPIQ+ L A+ G D+IG+ARTGTGKTL FGIP+L + I
Sbjct: 4 EICDALDRVNIVEPFPIQEMTLPVALMGTDLIGQARTGTGKTLGFGIPLLQRTISPGEPD 63
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG 221
+ E G+ P LV+ PTREL QV K+ ++ ++ + +YGG Q+ L G
Sbjct: 64 YEELAAPGK-PQALVVTPTRELTIQVAKDLTTASTVRTVRILTIYGGVAYEPQLEMLKSG 122
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VVGTPGR++DL R L+LS ++ +VLDEAD+ML +GF DVE IL + P+ RQ+M+
Sbjct: 123 VDVVVGTPGRLLDLANRGVLDLSHIKVLVLDEADEMLDLGFLPDVERILRKTPELRQTML 182
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP + L ++++PL + D ++ + + +KP ++ +++
Sbjct: 183 FSATMPSAVIGLARTHMRHPLNIRAESHEDTQMVPTTAQFVYRAHDLDKPEVVARILQAE 242
Query: 342 AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ G+ ++F +TKR+A RL +A + + +HGD++Q RER L+ FR + ++LI T
Sbjct: 243 DR-GRVMIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARERALTRFRGDKIDVLICT 301
Query: 401 DVAARGLDVPNVDLV 415
DVAARG+DV V V
Sbjct: 302 DVAARGIDVEGVTHV 316
>gi|402573181|ref|YP_006622524.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402254378|gb|AFQ44653.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 537
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 194/319 (60%), Gaps = 25/319 (7%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ +S+ ++ AL+ G + PIQK + A+ G D+IG+A+TGTGKT AFGIPI +K+
Sbjct: 12 IQLSKPLLQALSEMGFEEPSPIQKEAIPVALDGVDLIGQAQTGTGKTAAFGIPITEKVNA 71
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
KF L++ PTRELA QV +E + + + +YGG PI Q+RAL
Sbjct: 72 KFQAVQ-------ALIVTPTRELAIQVSEEIAKLGKYKHVKPLPIYGGQPIDRQIRALRM 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQS 279
G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E +L +P + +Q
Sbjct: 125 GYQVVVGTPGRLLDHLNRGTLRLQHVKMVVLDEADEMLDMGFIDDIESLLREVPAEGKQV 184
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSII 334
++FSATMPP IR L Y+ +P +V + D +++ I YE K +
Sbjct: 185 LLFSATMPPGIRKLAQTYMNSPRSVTVSRDE-------LTVPLIDQVFYETRESIKVDAL 237
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G++I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 238 GRII-DMEDIGQGIIFCRTKRGVDELVVALEARGYFADALHGDLSQQQRDRVMKRFRDGK 296
Query: 394 FNILIATDVAARGLDVPNV 412
+LIATDVAARGLD+ NV
Sbjct: 297 TELLIATDVAARGLDINNV 315
>gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD, partial [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 443
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 204/363 (56%), Gaps = 12/363 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L + +IV ALA +GI + F IQ+ L A+ G D+IG+ARTG GKTLAFG+P+L
Sbjct: 10 LTFANLGVRDEIVRALAEKGIERPFAIQELTLPLALAGDDLIGQARTGMGKTLAFGVPLL 69
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--------SLDTICVYGGTP 210
++I P LV+ PTREL QV + ++A L + +YGG P
Sbjct: 70 NRITAGVGVRALNGTPRALVVVPTRELCLQVHGDLSDAAKYLKAEGDRPLSVVSIYGGRP 129
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ AL G D VVGTPGR++DL ++ L L + +VLDEAD+ML +GF D+E IL
Sbjct: 130 YEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERIL 189
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
++P+ RQSM+FSATMP I +L ++ P + D + +K
Sbjct: 190 RQIPEERQSMLFSATMPGPIITLARTFMNQPTHIRAEAPHSAATHDTTEQFVYRAHALDK 249
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAF 389
++ +++ +G ++FT+TKR A ++A +A + + +HGD+ Q RE+ L AF
Sbjct: 250 VEMVSRILQAEGRGA-TMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQIAREKALKAF 308
Query: 390 RDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDA 447
R+G ++L+ATDVAARG+D+ ++ V + E ++ + R GK+ + ++D
Sbjct: 309 RNGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDW 368
Query: 448 DLL 450
D L
Sbjct: 369 DEL 371
>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
UCN34]
Length = 526
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K+++NP V + + + D + Y I +K +
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVA--AKELTTDLVDQYYIRVKEQDKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|433653854|ref|YP_007297562.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292043|gb|AGB17865.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 514
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 190/317 (59%), Gaps = 11/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L++++ I+ A+ G + IQ V+ ++G D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGSDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ F G+ CL+L PTRELA Q+ E + + VYGG I Q++
Sbjct: 61 NS---FGSNDGK---VFCLILTPTRELAIQINDELARIGKYSKVRLLPVYGGVQIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A+ GVD VVGTPGRV+DLIKRN L+L V+++V+DEAD+ML +GF +D++ I+ +
Sbjct: 115 AIKRGVDIVVGTPGRVLDLIKRNVLDLKSVKYLVIDEADEMLDMGFIDDIKEIINHTNEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+MMFSATMP I+SL KY+K+ + ++ Y + S+
Sbjct: 175 RQTMMFSATMPDEIKSLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCKI 234
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L + I+F +TK++ D L M ++ YN E +HGD+SQ+QR TL F++G +
Sbjct: 235 LDVDEP--SSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILD 292
Query: 396 ILIATDVAARGLDVPNV 412
L+ATDVAARG+D+ NV
Sbjct: 293 FLVATDVAARGIDIENV 309
>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953999|ref|ZP_12597040.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816267|gb|EGU51169.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 660
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 192/321 (59%), Gaps = 13/321 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
P+L+K+ R P ++LAPTRELA QV K ++ L + +YGG I
Sbjct: 63 PLLNKLDLAQ------RKPQAIILAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P + Q ++FSATMPP ++S+ ++L++P T+D+ G + D + EK
Sbjct: 177 APSSAQRVLFSATMPPMLKSIVERFLRDPETIDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQ 293
Query: 392 GRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 294 GVIDILVATDVVARGLDVPRI 314
>gi|343514254|ref|ZP_08751334.1| cold-shock DEAD-box protein A [Vibrio sp. N418]
gi|342800566|gb|EGU36084.1| cold-shock DEAD-box protein A [Vibrio sp. N418]
Length = 680
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 191/321 (59%), Gaps = 13/321 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S+L ++ I++AL G PIQ + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSELALNDAILSALDSMGFVSPTPIQAEAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
P+L+KI R P +VLAPTRELA QV E + L + +YGGT I
Sbjct: 63 PLLNKIDLAQ------RKPQAVVLAPTRELAIQVAAEMKNLGRNISGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G +VGTPGRV DLI R+ L+L EV +LDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHVIVGTPGRVQDLINRDRLHLDEVNTFILDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P+ Q ++FSATMPP ++++ ++L+ P+ VD+ G + D + EK
Sbjct: 177 APETAQRVLFSATMPPMLKNIVERFLREPVMVDVAGKN--HTVDKVEQQFWVVKGVEKDE 234
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ +
Sbjct: 235 AMSRLL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKT 293
Query: 392 GRFNILIATDVAARGLDVPNV 412
G +IL+ATDV ARGLDVP +
Sbjct: 294 GVIDILVATDVVARGLDVPRI 314
>gi|418966957|ref|ZP_13518660.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
gi|383346061|gb|EID24135.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
Length = 523
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|325977801|ref|YP_004287517.1| DEAD/DEAH box helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386337311|ref|YP_006033480.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334279947|dbj|BAK27521.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 526
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K+++NP V + + + D + Y I +K +
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVA--AKELTTDLVDQYYIRVKEQDKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|72161844|ref|YP_289501.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71915576|gb|AAZ55478.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 562
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 197/324 (60%), Gaps = 17/324 (5%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L + +++ ALA G + IQ+ + ++GRD++G+A TGTGKT AF +P
Sbjct: 8 EQFSFADLGLRPELLDALAEVGYEEPTAIQREAIPSLLEGRDLLGQAATGTGKTAAFSLP 67
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
IL ++ + RG P L+L PTRELA QV + H L + +YGG PI Q
Sbjct: 68 ILHRLPDSD----RGDTPSALILVPTRELALQVSEALHRYGRHLKARILPIYGGQPIGRQ 123
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+RAL+ GVD VV TPGR +D I R L L V+ VVLDEAD+ML +GFAED+E I+E +P
Sbjct: 124 LRALERGVDVVVATPGRALDHIGRGTLVLDTVRTVVLDEADEMLDMGFAEDIEAIIEEVP 183
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS-----DQKLADGISLYSIATSMYE 329
+NRQ+++FSATMP I + ++L +P+ V + S + K+ + Y +A
Sbjct: 184 ENRQTVLFSATMPDRIEGIARRHLTDPVRVRIARTSPAPGEEPKVRQ--NAYIVARPY-- 239
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
KP+ +G+++ + +VF +T+ + D+L + A+ Y E LHG +SQ QR+R ++
Sbjct: 240 KPAALGRVLDMESPTA-ALVFCRTREEVDQLTETLNARGYRAEALHGGMSQEQRDRVMAR 298
Query: 389 FRDGRFNILIATDVAARGLDVPNV 412
R G ++LIATDVAARGLD+ ++
Sbjct: 299 LRGGTADLLIATDVAARGLDIEHL 322
>gi|345889425|ref|ZP_08840430.1| hypothetical protein HMPREF0178_03204 [Bilophila sp. 4_1_30]
gi|345039614|gb|EGW43936.1| hypothetical protein HMPREF0178_03204 [Bilophila sp. 4_1_30]
Length = 594
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 191/319 (59%), Gaps = 14/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +SQ+++ A+ G + PIQ + + G+D +G+A+TGTGKT AFG+PIL+K
Sbjct: 5 FTELGLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPILEK 64
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I G++ LVL PTRELA QV +E + A + + +YGG PI Q+RA
Sbjct: 65 I-------ASGKSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRA 117
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGRVID ++R L LSE + VVLDEAD+ML +GF ED+E+ILE+ P +
Sbjct: 118 LAKGAQVVVGTPGRVIDHLQRGTLRLSEARIVVLDEADEMLDMGFREDIELILEQSPADC 177
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q ++FSATMP IR L+ ++L+ P + + I Y+K + ++
Sbjct: 178 QRVLFSATMPQPIRELSKRFLREPEMLTIA--HKMLTVPAIEQVYYEVRPYQKMDALCRV 235
Query: 338 ITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ K +VF TKR D + H + Y + LHGD++Q+QR+R +S FR I
Sbjct: 236 LDSQGF-RKALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEI 294
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARG+DV +VD V
Sbjct: 295 LVATDVAARGIDVDDVDAV 313
>gi|417850281|ref|ZP_12496192.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1080]
gi|339452963|gb|EGP65581.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1080]
Length = 524
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|23308803|ref|NP_599999.2| helicase [Corynebacterium glutamicum ATCC 13032]
gi|62389660|ref|YP_225062.1| ATP-dependent RNA helicase [Corynebacterium glutamicum ATCC 13032]
gi|21323537|dbj|BAB98164.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|41324995|emb|CAF19476.1| PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Corynebacterium
glutamicum ATCC 13032]
gi|385142918|emb|CCH23957.1| putative helicase [Corynebacterium glutamicum K051]
Length = 424
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 187/315 (59%), Gaps = 4/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +I AL GI++ F IQ+ L A+ G D IG+ARTG GKT FG+P+LD+
Sbjct: 10 FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA QV + +A +L YGGTP Q+ AL
Sbjct: 70 VFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR++DL KR AL+L +V +VLDEAD+ML +GF D+E IL L Q
Sbjct: 130 KVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L +L P+ + +K +I +++
Sbjct: 190 TMLFSATMPGAILTLARSFLNKPVHIRAETSDASATHKTTRQVVFQAHKMDKEAITAKIL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+F +TKR A ++A +A + ++ +HGD+ Q RE++L+AFR G+ +IL
Sbjct: 250 QSKDR-GKTIIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDIL 308
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARG+DV +V
Sbjct: 309 VATDVAARGIDVDDV 323
>gi|383775706|ref|YP_005460272.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
gi|381368938|dbj|BAL85756.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
Length = 622
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 201/317 (63%), Gaps = 10/317 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + + V AL+ GI+ F IQ+ L A++G D+IG+A TGTGKTL FG+P+L++
Sbjct: 24 FAELGVRAETVEALSAAGITHAFAIQEYALPIALRGTDLIGQAPTGTGKTLGFGLPLLER 83
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRAL 218
+ +E G P L++ PTREL QV ++ + + + + +YGG Q+ AL
Sbjct: 84 VTAPSE--GADGKPQALIVVPTRELGLQVARDLAAAGSTRGVRVLPIYGGVAYEPQVDAL 141
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV+ +VGTPGR++DL K+ L L V+ +VLDEAD+ML +GF +DVE IL LP RQ
Sbjct: 142 KKGVEILVGTPGRLLDLAKQKQLKLGSVRALVLDEADRMLDLGFLDDVEKILAMLPDQRQ 201
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSIIGQL 337
+M+FSATMP I +L+ ++L+NP+T+ G + + A ++ + T K ++ ++
Sbjct: 202 TMLFSATMPDPIVALSRRFLRNPVTIH-AGHTAESAASPLTKQVVYRTHPMNKLEMVARI 260
Query: 338 ITEHAKG-GKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+ A+G G ++FT+TKR ADR+A + + + +HGD+ Q RER L AFR G+ +
Sbjct: 261 L--QARGRGLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRTGKID 318
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLDV V
Sbjct: 319 VLVATDVAARGLDVSGV 335
>gi|145294934|ref|YP_001137755.1| hypothetical protein cgR_0880 [Corynebacterium glutamicum R]
gi|417971974|ref|ZP_12612890.1| hypothetical protein CgS9114_13156 [Corynebacterium glutamicum
S9114]
gi|140844854|dbj|BAF53853.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043728|gb|EGV39416.1| hypothetical protein CgS9114_13156 [Corynebacterium glutamicum
S9114]
Length = 424
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 187/315 (59%), Gaps = 4/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +I AL GI++ F IQ+ L A+ G D IG+ARTG GKT FG+P+LD+
Sbjct: 10 FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA QV + +A +L YGGTP Q+ AL
Sbjct: 70 VFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR++DL KR AL+L +V +VLDEAD+ML +GF D+E IL L Q
Sbjct: 130 KVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L +L P+ + +K +I +++
Sbjct: 190 TMLFSATMPGAILTLARSFLNKPVHIRAETSDASATHKTTKQVVFQAHKMDKEAITAKIL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+F +TKR A ++A +A + ++ +HGD+ Q RE++L+AFR G+ +IL
Sbjct: 250 QAKDR-GKTIIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDIL 308
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARG+DV +V
Sbjct: 309 VATDVAARGIDVDDV 323
>gi|424871855|ref|ZP_18295517.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393167556|gb|EJC67603.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 602
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 198/328 (60%), Gaps = 14/328 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 49 NFESLGVSKPIVATLFQLGIETPTPIQEHAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 108
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + SL V GG I+ Q
Sbjct: 109 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQ 167
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 168 LEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 227
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++ +
Sbjct: 228 QTMLFSATMPKAIADLAGEYLVDPVKVEVT--PPGKAADKVEQYVHFVAGKNDKTELLRK 285
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G+ +VF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 286 SLTENPD-GRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 344
Query: 396 ILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 345 TLIATDVAARGIDIPAVSHVYNYDLPEV 372
>gi|323453440|gb|EGB09312.1| hypothetical protein AURANDRAFT_895, partial [Aureococcus
anophagefferens]
Length = 591
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 197/332 (59%), Gaps = 32/332 (9%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
AL +RGI LFPIQ A G+D++ RARTGTGKTLAF +P+++K++
Sbjct: 14 ALDKRGIKVLFPIQAATFAAIFDAGKDLLARARTGTGKTLAFALPVVEKLLLDKATQ--- 70
Query: 172 RNPLCLVLAPTRELAKQVEKEFHESAPS-LDTICVYGGTPISHQMRALDYGVDAVVGTPG 230
R P LVLAPTRELA+QV +F + A L T+CVYGG+ AL GVD VVGTPG
Sbjct: 71 RAPRALVLAPTRELAQQVLGDFSDVAHGRLRTLCVYGGSAYGPSCDALRRGVDVVVGTPG 130
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL------ERLPQNRQSMMFSA 284
R +DLI++ L+ S + F VLDEADQML +GF +++E I + RQ ++FSA
Sbjct: 131 RTMDLIEKGVLDASALSFAVLDEADQMLDMGFKDELEKIFAAMAPAGAPARARQLLLFSA 190
Query: 285 TMPPWIRSLTNKYLKNPLT---VDLVGDSDQKLADGIS--LYSIATSMYEKP-------- 331
T+PPW+R++ Y + + +DLVG DG+ + +T + K
Sbjct: 191 TLPPWVRNIAKAYAQTDASLEAIDLVGSGGGDARDGLGGIVCQASTDVSHKCVPVASWSM 250
Query: 332 --SIIGQLITEHAKGG--KCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLS 387
+I ++ + G +C++F +TK + + + + +Y LHGDI Q+ RE+T++
Sbjct: 251 NHKVINDVVGAYGLNGAARCVLFCETKAECNDVVDSKEITYERRALHGDIPQALREKTMA 310
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLVELVV 419
AFR G+F IL+ATDVAARGLD+ +VELVV
Sbjct: 311 AFRAGQFKILVATDVAARGLDM----VVELVV 338
>gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 559
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 194/317 (61%), Gaps = 15/317 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ LD++ +IVAA+ G + IQ + + G DMIG+A+TGTGKT AF +PIL+K
Sbjct: 8 FAALDLNPNIVAAVLATGYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA
Sbjct: 68 IDVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQ 336
Q+++FSAT+P IRS+ ++L+ P V + S + I + +K P+++
Sbjct: 182 QTVLFSATLPSSIRSIAERHLREPKHVKI--QSKTQTVTAIDQAHLMVHADQKIPAVLRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +
Sbjct: 240 LEVEEFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297
Query: 396 ILIATDVAARGLDVPNV 412
I++ATDVAARGLDVP +
Sbjct: 298 IVVATDVAARGLDVPRI 314
>gi|450047104|ref|ZP_21839304.1| ATP-dependent RNA helicase [Streptococcus mutans N34]
gi|449197930|gb|EMB99069.1| ATP-dependent RNA helicase [Streptococcus mutans N34]
Length = 517
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 201/321 (62%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|429319791|emb|CCP33100.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034183]
Length = 524
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ TDVAARGLD+ V
Sbjct: 292 VLVTTDVAARGLDISGV 308
>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 528
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 189/323 (58%), Gaps = 19/323 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ IS DI A+ G PIQ+ V+ ++G D+IG+A+TGTGKT AFGIP+L
Sbjct: 2 MKFEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLL 61
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
+K+ R L+L PTRELA QV E + + + +YGG I HQ++
Sbjct: 62 EKVTS-------DRQVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGTPGRV+D + R L L V ++LDEAD+ML +GF ED+E IL+++ N
Sbjct: 115 ALKRGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK---PSI 333
RQ+M+FSATMPP IR L+NKY+ NP V + + S+ + + EK S+
Sbjct: 175 RQTMLFSATMPPPIRKLSNKYMNNPKQVTI----SKGEVTAPSINQVYFKVLEKNKLDSL 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +E G I+F +TK+ L A+ A+ Y + LHGD++QSQR+ + FRD
Sbjct: 231 CRVIDSETIDLG--IIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDS 288
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
LIATDVAARG+DV NV V
Sbjct: 289 SIEFLIATDVAARGIDVENVSHV 311
>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
Length = 599
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 198/326 (60%), Gaps = 13/326 (3%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+K+E + S+ +V L +G + PIQ A M GRD++G+A+TGTGKT AF
Sbjct: 38 AKEEPSGFAGFGFSEALVKTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAF 97
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTP 210
+P+L+++ K K P LVLAPTRELA QV + F + P L+ + +YGG+
Sbjct: 98 ALPLLERLQKDATK------PQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGGSD 151
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ AL GVD VVGTPGRV+D +++ L+ + ++ +VLDEAD+ML +GF +DVE IL
Sbjct: 152 FRSQIHALKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWIL 211
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
++LP+ RQ ++FSATMP IR L+ +YL+ P + + + +K A I I K
Sbjct: 212 DQLPEERQVVLFSATMPSEIRRLSKRYLREPAEITI--KTKEKEARRIRQRCITLQNSHK 269
Query: 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAF 389
+ +++ E G I+F +TK ++ ++ A ++ L+GD+ Q+QRERT+
Sbjct: 270 LEALNRVL-EAVTGEGVIIFARTKAITLNVSESLEAAGHDVAVLNGDVPQNQRERTVERL 328
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
R G NIL+ATDVAARGLDV + LV
Sbjct: 329 RKGTVNILVATDVAARGLDVDRIGLV 354
>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
Length = 521
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|377572295|ref|ZP_09801385.1| putative ATP-dependent RNA helicase [Gordonia terrae NBRC 100016]
gi|377530391|dbj|GAB46550.1| putative ATP-dependent RNA helicase [Gordonia terrae NBRC 100016]
Length = 539
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 190/327 (58%), Gaps = 16/327 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + + IV+ALA G + F IQ+ L A++G D+IG+ARTG GKT FGIP+L +
Sbjct: 20 FAELGVDERIVSALAADGKTHTFAIQELTLPLALEGHDLIGQARTGMGKTFGFGIPLLHR 79
Query: 161 IIKFNEKHGR--GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI------------CVY 206
+ E R P LV+ PTREL QV + +APSL+ +Y
Sbjct: 80 LAHAEETGVRPLDNTPRALVIVPTRELCVQVTGDLQVAAPSLEVTLADGRKRPLKVTSIY 139
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GG P Q+ L GVD VVGTPGR++DL ++ L L +V +VLDEAD+ML +GF D+
Sbjct: 140 GGRPYESQIAELQSGVDVVVGTPGRLLDLAQQGHLVLGKVSILVLDEADEMLDLGFLPDI 199
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
E I+ LP RQ+M+FSATMP I +L +L P + +D + D Y+
Sbjct: 200 ERIMSALPTPRQTMLFSATMPGPIVTLARTFLNRPTHIRAENANDSAVHDRTKQYAYRAH 259
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERT 385
+K ++ +++ +G ++FT+TKR A ++A +A + + +HGD+ Q RE+
Sbjct: 260 ALDKAELVARILQADGRGA-TMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKA 318
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNV 412
L FRDG ++L+ATDVAARG+D+ +V
Sbjct: 319 LKRFRDGTIDVLVATDVAARGIDIDDV 345
>gi|383938412|ref|ZP_09991624.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
gi|418973302|ref|ZP_13521309.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383349699|gb|EID27622.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383714714|gb|EID70708.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
Length = 526
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|380512805|ref|ZP_09856212.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas sacchari NCPPB 4393]
Length = 480
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 186/307 (60%), Gaps = 13/307 (4%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
A+A G PIQ A + + GRD++G+A+TGTGKT AF +PIL ++ F + R
Sbjct: 3 AVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRL-DFAQ-----R 56
Query: 173 NPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
P LVLAPTRELA QV + FH A P + VYGG P Q+ AL GV VVGTP
Sbjct: 57 KPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGTP 116
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID + R L+LSE++ +VLDEAD+ML +GF +DVE +L++LP++RQ +FSATMPP
Sbjct: 117 GRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPESRQVALFSATMPPA 176
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
I+ + YL +P V ++ A+ Y + +++ ++ I E I+
Sbjct: 177 IKRIAQTYLNDPAEV-IIASKTTTSANIRQRYWAVSGLHKLDALT--RILEVEPFDAMII 233
Query: 350 FTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408
F +TK D LA + A+ ++GDI Q+QRER + +DG+ ++L+ATDVAARGLD
Sbjct: 234 FARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDVLVATDVAARGLD 293
Query: 409 VPNVDLV 415
V + V
Sbjct: 294 VERISHV 300
>gi|425055862|ref|ZP_18459326.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
gi|403033019|gb|EJY44552.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
Length = 503
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 197/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI +E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRHELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++K+P V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKSPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|29375434|ref|NP_814588.1| DEAD/DEAH box helicase [Enterococcus faecalis V583]
gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|384512540|ref|YP_005707633.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|422686078|ref|ZP_16744289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|422689795|ref|ZP_16747899.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|422692134|ref|ZP_16750156.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|422694449|ref|ZP_16752440.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|422696585|ref|ZP_16754542.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|422699736|ref|ZP_16757597.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|422703461|ref|ZP_16761283.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|422707307|ref|ZP_16765002.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|422711628|ref|ZP_16768555.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|422713329|ref|ZP_16770079.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|422717645|ref|ZP_16774329.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|422720386|ref|ZP_16777004.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|422722778|ref|ZP_16779327.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|422726299|ref|ZP_16782750.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|422729834|ref|ZP_16786229.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|422731038|ref|ZP_16787419.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|422735346|ref|ZP_16791620.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|422738996|ref|ZP_16794181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|424670976|ref|ZP_18107991.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|424676386|ref|ZP_18113259.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|424679344|ref|ZP_18116169.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|424682393|ref|ZP_18119164.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|424686115|ref|ZP_18122786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|424689249|ref|ZP_18125835.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|424692828|ref|ZP_18129304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|424696170|ref|ZP_18132529.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|424699415|ref|ZP_18135635.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|424703855|ref|ZP_18139979.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|424705957|ref|ZP_18141971.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|424716207|ref|ZP_18145521.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|424719149|ref|ZP_18148371.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|424722510|ref|ZP_18151560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|424726330|ref|ZP_18154998.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|424734532|ref|ZP_18163044.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|424746519|ref|ZP_18174750.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
gi|424757333|ref|ZP_18185087.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis V583]
gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|402356926|gb|EJU91644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|402357040|gb|EJU91755.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|402359536|gb|EJU94161.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|402367689|gb|EJV02027.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|402368059|gb|EJV02386.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|402368986|gb|EJV03284.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|402376373|gb|EJV10318.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|402376784|gb|EJV10706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|402378414|gb|EJV12272.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|402383780|gb|EJV17363.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|402388552|gb|EJV21987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|402388773|gb|EJV22199.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|402397103|gb|EJV30139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|402399841|gb|EJV32699.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|402401968|gb|EJV34706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|402407406|gb|EJV39938.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|402407938|gb|EJV40436.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|402409246|gb|EJV41678.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
Length = 536
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 196/317 (61%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L +L ++ ++++A+ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 22 LKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 81
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N R LV+APTRELA Q ++E + VYGG I Q+R
Sbjct: 82 NKIDADN------RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIR 135
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R L L V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 136 GLKDRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQ 195
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+++ K++K P V + + + AD I Y + + +EK I+ +
Sbjct: 196 RQTLLFSATMPPAIKNIGVKFMKQPEHVKI--KAKEMTADLIDQYYVRSKDFEKFDIMTR 253
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F++G +
Sbjct: 254 LLDVQTP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLD 312
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 313 ILVATDVAARGLDISGV 329
>gi|424918576|ref|ZP_18341940.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392854752|gb|EJB07273.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 567
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 197/328 (60%), Gaps = 14/328 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + L V GG I+ Q
Sbjct: 63 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSHLRINVVVGGVSINKQQLQ 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A++L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 122 LEKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L YL +P+ V++ K AD + Y +K ++ +
Sbjct: 182 QTMLFSATMPKAIADLAGDYLVDPVKVEVT--PPGKAADKVEQYVHFVAGKNDKTELLRK 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 240 SLTENPD-GRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 298
Query: 396 ILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 299 TLIATDVAARGIDIPAVSHVYNYDLPEV 326
>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|386342704|ref|YP_006039070.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|334865105|gb|AEH15576.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 640
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 193/318 (60%), Gaps = 16/318 (5%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + N++L+NP+ V + +S Q + I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANQHLRNPVHVRI--ESSQTTVESIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +IL
Sbjct: 241 VENTEG--VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLV 415
IATDVAARGLDV + V
Sbjct: 299 IATDVAARGLDVERIGHV 316
>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|373951054|ref|ZP_09611015.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|378706943|ref|YP_005271837.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386323127|ref|YP_006019244.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|418025621|ref|ZP_12664598.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|333817272|gb|AEG09938.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|353534882|gb|EHC04447.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|373887654|gb|EHQ16546.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 640
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 193/318 (60%), Gaps = 16/318 (5%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + N++L+NP+ V + +S Q + I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANQHLRNPVHVRI--ESSQTTVESIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + + G+ +IL
Sbjct: 241 VENTEG--VIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLV 415
IATDVAARGLDV + V
Sbjct: 299 IATDVAARGLDVERIGHV 316
>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
Length = 536
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 196/317 (61%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L +L ++ ++++A+ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 22 LKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 81
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N R LV+APTRELA Q ++E + VYGG I Q+R
Sbjct: 82 NKIDADN------RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIR 135
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R L L V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 136 GLKDRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQ 195
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+++ K++K P V + + + AD I Y + + +EK I+ +
Sbjct: 196 RQTLLFSATMPPAIKNIGVKFMKQPEHVKI--KAKEMTADLIDQYYVRSKDFEKFDIMTR 253
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F++G +
Sbjct: 254 LLDVQTP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLD 312
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 313 ILVATDVAARGLDISGV 329
>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
Length = 528
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++KNP V + + + Y + EK + +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKNPEHVKIKATELTNV--NVDQYYVRVKENEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R + F++ +
Sbjct: 233 LM-DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHID 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|450030943|ref|ZP_21833495.1| ATP-dependent RNA helicase [Streptococcus mutans G123]
gi|449192085|gb|EMB93521.1| ATP-dependent RNA helicase [Streptococcus mutans G123]
Length = 517
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNYVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 192/323 (59%), Gaps = 11/323 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++++D++ A+ G IQ+ + ++G D+I +A+TGTGKTLAFG P
Sbjct: 2 ENKNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
++ + +K G LVL PTRELA Q++ E + T + VYGG I Q
Sbjct: 62 VISSLCDNEKKKGVK----ALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQ 117
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVGTPGR++D I R L L + F++LDEAD+ML++GF ED+E I+E P
Sbjct: 118 IKDIKSGVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTP 177
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA-DGISLYSIATSMYEKPSI 333
+ +Q+M+FSATMP I+ L Y+K V+ + + L D I+ + A +K
Sbjct: 178 EEKQTMLFSATMPAAIKKLALNYMKED--VEHIAILKKSLTVDKIAQHYFAVKNKDKLEA 235
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
I ++I + + I+F +TKR D L AM +K YN E +HGD+SQ+QR TL F+
Sbjct: 236 ICRII-DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKA 294
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
N L+ATDVAARG+DV N+ V
Sbjct: 295 TLNFLVATDVAARGIDVENISHV 317
>gi|442771472|gb|AGC72158.1| ATP-dependent RNA helicase RhlE [uncultured bacterium A1Q1_fos_560]
Length = 449
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 194/329 (58%), Gaps = 15/329 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ + L + G + PIQ A + A++GRD++ +A+TG+GKTLAF IP++
Sbjct: 2 VSFAELSLTSFLADRLRQAGFTAPTPIQGAAIPLALEGRDLLAQAKTGSGKTLAFLIPLI 61
Query: 159 DKIIKFNEK--------HGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGT 209
++ +K N K G R+P LVLAPTRELA Q+E E + AP S+ ++ VYGG
Sbjct: 62 ERAVKENWKPAGHGAAQAGSSRSPRALVLAPTRELALQIEMELRKYAPPSVTSLAVYGGV 121
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
PI RAL V+GTPGR++D+ L+L +++VV+DEADQML GF D++ I
Sbjct: 122 PIERHYRALRQPPLIVIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRI 181
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSM 327
L+ LP RQ+M+FSAT P I SL LKNP VD +S K+ Y + S
Sbjct: 182 LQLLPAQRQTMLFSATFSPEILSLAESMLKNPARTAVDPGVNSPTKITHA---YYVVPSE 238
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
+ +I L+ G + +VF K RLA + + + + G+ SQ+QRERTL
Sbjct: 239 ASRVQLIHTLLQSSEAGDQSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTL 298
Query: 387 SAFRDGRFNILIATDVAARGLDVPNVDLV 415
+AFR GR L+ATDVAARGLDVP V V
Sbjct: 299 TAFRSGRLRSLVATDVAARGLDVPTVSQV 327
>gi|424882925|ref|ZP_18306557.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392519288|gb|EIW44020.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 605
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 198/328 (60%), Gaps = 14/328 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 49 NFESLGVSKPIVATLFQLGIETPTPIQEHAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 108
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + SL V GG I+ Q
Sbjct: 109 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQ 167
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 168 LEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 227
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++ +
Sbjct: 228 QTMLFSATMPKAIADLAGEYLVDPVKVEVT--PPGKAADKVEQYVHFVAGKNDKTELLRK 285
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G+ +VF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 286 SLTENPD-GRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 344
Query: 396 ILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 345 TLIATDVAARGIDIPAVSHVYNYDLPEV 372
>gi|418246652|ref|ZP_12873046.1| hypothetical protein KIQ_14222 [Corynebacterium glutamicum ATCC
14067]
gi|354509267|gb|EHE82202.1| hypothetical protein KIQ_14222 [Corynebacterium glutamicum ATCC
14067]
Length = 424
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 187/315 (59%), Gaps = 4/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +I AL GI++ F IQ+ L A+ G D IG+ARTG GKT FG+P+LD+
Sbjct: 10 FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA QV + +A +L YGGTP Q+ AL
Sbjct: 70 VFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR++DL KR AL+L +V +VLDEAD+ML +GF D+E IL L Q
Sbjct: 130 KVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L +L P+ + +K +I +++
Sbjct: 190 TMLFSATMPGAILTLARSFLNKPVHIRAETSDASATHKTTRQVVFQAHKMDKEAITAKIL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+F +TKR A ++A +A + ++ +HGD+ Q RE++L+AFR G+ +IL
Sbjct: 250 QAKDR-GKTIIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDIL 308
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARG+DV +V
Sbjct: 309 VATDVAARGIDVDDV 323
>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
Length = 374
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 199/323 (61%), Gaps = 14/323 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + S L++ + ++ A+ G + IQ + + G DMIG+A+TGTGKTLAFG P
Sbjct: 2 ENIKFSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L +I ++ LVL PTRELA QV E A T + VYGG PI Q
Sbjct: 62 VLSQIESSDKIS-------ALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQ 114
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+++L GVD VVGTPGR++D IKRN L+LS V F+VLDE+D+ML++GF +D+E I++ L
Sbjct: 115 IKSLRRGVDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLN 174
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMYEKPSI 333
++RQ+++FSATMP I L +KY+KN + + +V +S + I Y ++
Sbjct: 175 KDRQTLLFSATMPKEIAKLASKYMKNEVKHIKIVKNS--LTVEKIKQYYYEVKHKDRFES 232
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +++ + + I+F +TKR D L +M A+ YN E +HGD+ Q+QR TL F++G
Sbjct: 233 LCRIL-DIDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEG 291
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ L+ATDVAARG+DV +V V
Sbjct: 292 TLDFLVATDVAARGIDVDDVSHV 314
>gi|418977410|ref|ZP_13525229.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
gi|383349927|gb|EID27841.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
Length = 524
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELIRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 567
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 199/329 (60%), Gaps = 16/329 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
K++ +E+ R L+LAPTREL Q+ K+F + L V GG I+ Q
Sbjct: 63 KLLA-DERRPDNRTTRTLILAPTRELVNQIAETLKKFIRKS-HLRINVVVGGVSINKQQL 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ G D +V TPGR++DLI R A++L+ V+++VLDEADQML +GF D+ I + +P+
Sbjct: 121 QLEKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIG 335
RQ+M+FSATMP I L YL +P+ V++ K AD + Y +K ++
Sbjct: 181 RQTMLFSATMPKAIADLAGDYLVDPVKVEVT--PPGKAADKVEQYVHFVAGKNDKTELLR 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+ +TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 239 KSLTENPD-GRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSI 297
Query: 395 NILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 298 KTLIATDVAARGIDIPAVSHVYNYDLPEV 326
>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase [Methanoregula boonei 6A8]
gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
Length = 532
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 191/330 (57%), Gaps = 31/330 (9%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L S L +S++I A+ G + PIQ + GRD+ +A+TGTGKT AFGIP++
Sbjct: 5 LQFSDLSLSKEIAKAIENMGFEEPTPIQALAIPLIQAGRDVTAQAQTGTGKTSAFGIPVI 64
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+ I R +VL PTRELA Q+ +EF P + + VYGG PI Q+
Sbjct: 65 ENI------DASQRVVQVIVLCPTRELAIQIAEEFSHLLAYLPKISVLPVYGGQPIERQL 118
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL GV V+GTPGRV+D +KR L+L V VVLDEADQML +GF +D+E+IL+R+PQ
Sbjct: 119 KALANGVHIVIGTPGRVMDHLKRRTLSLDHVSMVVLDEADQMLDMGFRDDIELILKRVPQ 178
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATS 326
RQ+++FSAT+P I ++ ++ P LTV + S ++ D L S+
Sbjct: 179 KRQTLLFSATLPKPIIEISKRFQNRPEFVRVEYQELTVPAIEQSYIEVRDRDKLDSLCR- 237
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERT 385
+ + I+F TKR A+ LA + A+ Y E LHGD+ QSQR+R
Sbjct: 238 -----------VIDVVDPQLAIIFCNTKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRV 286
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+ FR G +ILIATDVAARG+DV +VD+V
Sbjct: 287 MGGFRKGTIDILIATDVAARGIDVEDVDMV 316
>gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
51172]
gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
51172]
Length = 550
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 200/325 (61%), Gaps = 14/325 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
K++ ++ +L IS++ + A+A G PIQ+ + P + G+D+IG+A+TGTGKT AF
Sbjct: 11 KEKIVEFKELYISEETLRAIADMGFKSPSPIQEETIPPLLDGKDVIGQAQTGTGKTAAFA 70
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPI 211
IPI++KI E +G + LVL PTREL QV KE A + + VYGGT I
Sbjct: 71 IPIIEKI----EANGLTQ---ALVLCPTRELCIQVAKEIGNLAKYHTGIKILSVYGGTQI 123
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q++AL GV+ VVGTPGR++DL++R L L ++ VVLDEAD+M +GF +D++ IL+
Sbjct: 124 VKQIKALKKGVEIVVGTPGRLMDLMRRRVLKLDNLKIVVLDEADEMFDMGFRDDMKFILD 183
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
+RQ+ FSATM I + Y KNP+T+ + + + + I + I +K
Sbjct: 184 ATNDDRQTCFFSATMGKEISEFSKIYQKNPVTIKI--KAKELTVNKIDQHFIKLKEADKE 241
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFR 390
+ +L+ E K I+F TKR D+L +++ KSY + LHGD+ Q+QR+ + FR
Sbjct: 242 ETLTRLL-EINKPRLAIIFCNTKRKVDKLVESLSKKSYLVDGLHGDLKQTQRDIVMKKFR 300
Query: 391 DGRFNILIATDVAARGLDVPNVDLV 415
+ +IL+ATDVAARGLDV +VD+V
Sbjct: 301 NNTIDILVATDVAARGLDVDDVDMV 325
>gi|402488920|ref|ZP_10835725.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
gi|401812104|gb|EJT04461.1| DEAD/DEAH box helicase [Rhizobium sp. CCGE 510]
Length = 553
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 194/320 (60%), Gaps = 8/320 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIETPTPIQEHAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + L V GG I+ Q
Sbjct: 63 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSHLRINVVVGGVSINKQQLQ 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A++L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 122 LEKGTDILVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L YL +P+ V++ K AD + Y +K ++ +
Sbjct: 182 QTMLFSATMPKAIADLAGDYLVDPVKVEVT--PPGKAADKVEQYVHFVAGKNDKTELLRK 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G+ IVF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 240 SLTENPD-GRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 298
Query: 396 ILIATDVAARGLDVPNVDLV 415
LIATDVAARG+D+P V V
Sbjct: 299 TLIATDVAARGIDIPAVSHV 318
>gi|410860280|ref|YP_006975514.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
gi|410817542|gb|AFV84159.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
Length = 586
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 191/316 (60%), Gaps = 13/316 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++++VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I+ +T +YLK+P V + S A I + + K + +++
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIA--SKVSTASTIRQRYCQIAPHHKLEALTRIMEV 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
A G I+F +TK LA + A+ Y+ EPL+GDI QS RERT+ + G+ +IL+A
Sbjct: 244 EAFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQSARERTVEKLKQGQIDILVA 302
Query: 400 TDVAARGLDVPNVDLV 415
TDV ARGLDV V V
Sbjct: 303 TDVVARGLDVERVSHV 318
>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
Length = 498
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 193/323 (59%), Gaps = 16/323 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +++ ++ A+A G PIQ + PA++GRD++G A+TGTGKT AF +P+
Sbjct: 4 FSDMNLDPKVLKAVAETGYDTPTPIQDGAIPPALEGRDVLGIAQTGTGKTAAFTLPM--- 60
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
I R R P LVLAPTRELA QV + F A L + GGT Q + +
Sbjct: 61 ITLLGRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQDKLI 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
D GVD ++ TPGR++D ++R L L++V+ +V+DEAD+ML +GF D+E I +R P RQ
Sbjct: 121 DKGVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQ 180
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLADGISLYSIATSM---YEKPSI 333
++ FSATM P I +TN +L NP V++ ++ + G+ ++ + + EK ++
Sbjct: 181 TLFFSATMAPEIERITNTFLSNPAKVEVARAATTNVNIKQGVVMFRASAKLREATEKRAL 240
Query: 334 IGQLITEHAKGGKC---IVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAF 389
+ LI +A+G C I+F K D D +A ++ K Y+ P+HGD+ QS R RTL +F
Sbjct: 241 LRALI--NAEGDACSNAIIFCNRKADVDVVAKSLNKYGYDAAPIHGDLEQSHRTRTLESF 298
Query: 390 RDGRFNILIATDVAARGLDVPNV 412
RD + L+A+DVAARGLD+P V
Sbjct: 299 RDNKLRFLVASDVAARGLDIPAV 321
>gi|385259821|ref|ZP_10037981.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
gi|385193235|gb|EIF40614.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
Length = 525
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 514
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 191/317 (60%), Gaps = 11/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L++++ I+ A+ G + IQ V+ +QG D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLQGSDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ I G+ CLVL PTRELA QV E + + VYGG I Q++
Sbjct: 61 NNI---GSNEGK---VFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A+ GVD ++GTPGRV+DLIKR+ L L++V+++VLDEAD+ML +GF +D++ I+ +
Sbjct: 115 AIKRGVDIIIGTPGRVLDLIKRDILRLNDVKYLVLDEADEMLDMGFIDDIKEIINHTNKE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+MMFSATMP I++L KY+K+ + ++ Y + S+
Sbjct: 175 RQTMMFSATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRI 234
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E I+F +TK++ D L M ++ YN E +HGD+SQ+QR TL F++G +
Sbjct: 235 LDVEEP--SSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLD 292
Query: 396 ILIATDVAARGLDVPNV 412
L+ATDVAARG+D+ N+
Sbjct: 293 FLVATDVAARGIDIENL 309
>gi|33863354|ref|NP_894914.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313]
gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9313]
Length = 635
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 195/322 (60%), Gaps = 16/322 (4%)
Query: 101 ISKLD---ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
+S+ D S+ ++ LA +G + PIQKA + M GRD++G+A+TGTGKT AF +P+
Sbjct: 82 VSEFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPL 141
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQ 214
++++ H G P LVLAPTRELA QV F A P L + VYGG Q
Sbjct: 142 IERL------HDHGSRPQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQ 195
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L GVD VVGTPGR++D +++ L+ S ++ +VLDEAD+ML +GF +DVE ILE+LP
Sbjct: 196 INTLKRGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLP 255
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ ++FSATMP IR L+ +YL P + + DQ+ A I I K +
Sbjct: 256 EERQMVLFSATMPSEIRRLSKRYLHEPAEI-TIKSRDQE-ARLIRQRCITLQNSHKLEAL 313
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+++ E G I+F +TK +A A+ A ++ L+GD+ Q+QRERT+ R G
Sbjct: 314 RRVL-EAFTGEGVIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKGS 372
Query: 394 FNILIATDVAARGLDVPNVDLV 415
NIL+ATDVAARGLDV + LV
Sbjct: 373 VNILVATDVAARGLDVDRISLV 394
>gi|374628683|ref|ZP_09701068.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
gi|373906796|gb|EHQ34900.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
Length = 529
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 193/322 (59%), Gaps = 15/322 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++LDIS +I+ A+ G + PIQ + M G+D+ +A+TGTGKT AF IP+L
Sbjct: 5 LKFNELDISNEILKAIEDMGFEEPTPIQNISIPLIMSGKDITAQAQTGTGKTAAFAIPLL 64
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
+KI + +VLAPTREL Q+ +EF+ + + + +YGG PI Q+
Sbjct: 65 EKI------NTDKLAVQAIVLAPTRELTIQIAEEFNRLIKYMADIRILPIYGGQPIERQI 118
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
A+ GV ++GTPGRVID + R L++SEV FVVLDEADQML +GF ED+E IL P+
Sbjct: 119 SAMRRGVQVIIGTPGRVIDHLGRKTLSMSEVNFVVLDEADQMLDMGFREDLEEILGYAPK 178
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I ++ + NP V + + I + I EK ++
Sbjct: 179 ERQTVLFSATMPAPILRISKSFQHNPEFVSITPKT--LTVPSIEQFYIEVRESEKADLLC 236
Query: 336 QLITEHAKG-GKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ I KG G+ IVF TK+ D L+ M ++ Y E LHGD+ Q QR+R + FR+G
Sbjct: 237 RFI--DIKGPGQSIVFCNTKKRVDELSSIMRSRGYFAEGLHGDLKQQQRDRVMGKFRNGT 294
Query: 394 FNILIATDVAARGLDVPNVDLV 415
+ILIATDVAARG+DV +++ V
Sbjct: 295 IDILIATDVAARGIDVEDIETV 316
>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
Length = 515
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 196/317 (61%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L ++ ++++A+ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N R LV+APTRELA Q ++E + VYGG I Q+R
Sbjct: 61 NKIDADN------RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R L L V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 115 GLKDRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQ 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+++ K++K P V + + + AD I Y + + +EK I+ +
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKQPEHVKI--KAKEMTADLIDQYYVRSKDFEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F++G +
Sbjct: 233 LLDVQTP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase [Frankia sp. CcI3]
gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
Length = 649
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 205/355 (57%), Gaps = 8/355 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + + V+AL GI FPIQ+ L A+ D+IG+ARTGTGKTLAFG+P++
Sbjct: 87 FAELGVRAETVSALTEAGIVHAFPIQELTLPLALARNDIIGQARTGTGKTLAFGVPVVQT 146
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
++ E G P LV+ PTREL QV + + L + VYGG Q+ AL
Sbjct: 147 VLAAKE--GADGRPQALVVVPTRELCVQVTADVTRAGARRGLRVLSVYGGRAYEPQLSAL 204
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR++DL +++ L+L+ V +VLDEAD+ML +GF DVE I+ +LP RQ
Sbjct: 205 RAGVDIVVGTPGRLLDLARQHVLDLAGVGTLVLDEADEMLDLGFLPDVERIMSQLPTERQ 264
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP + SL +++K P+ V + + + +K ++ +++
Sbjct: 265 TMLFSATMPGPVISLARRFMKRPVHVRAEQPDEGRTVPTTRQHVFRAHALDKMEVLARVL 324
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G +VF +T+R AD++A +AK + +HGD+ Q QRE+ L AFR G+ ++L
Sbjct: 325 QAGGR-GLAMVFVRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVDVL 383
Query: 398 IATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDADLL 450
+ATDVAARG+D+ V V E +L + R G+S V +D D L
Sbjct: 384 VATDVAARGIDINGVTHVVNYQCPEDENVYLHRIGRTGRAGESGVAITFVDWDDL 438
>gi|397779795|ref|YP_006544268.1| ATP-dependent RNA helicase DeaD [Methanoculleus bourgensis MS2]
gi|396938297|emb|CCJ35552.1| ATP-dependent RNA helicase DeaD [Methanoculleus bourgensis MS2]
Length = 521
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 192/316 (60%), Gaps = 13/316 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ISQ + A+ G + PIQ + + ++GRD+ G+A+TGTGKT AFG+P ++++
Sbjct: 10 FNISQKTLQAIQDMGFEEPTPIQVSTIPVILEGRDVTGQAQTGTGKTAAFGVPAIEQVDV 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
N R LVL+PTRELA Q +EF A L+ + +YGG PI Q R L
Sbjct: 70 GN------RETQVLVLSPTRELAIQTAEEFARLAKHHRGLNILPIYGGQPIERQFRGLRR 123
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGRV+D + R L+ + V+ VVLDEADQML +GF ED+E IL+ P +RQ++
Sbjct: 124 GAQVVVGTPGRVLDHLDRGTLSFAAVKMVVLDEADQMLDMGFREDIEKILDETPGDRQTI 183
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSAT+P I ++ ++ KNP + V + + LY + K I+ +L+
Sbjct: 184 LFSATLPGPILEISKRFQKNPEVIS-VARREVTVPQIEQLY-LEVRSRNKLEILCRLLDM 241
Query: 341 HAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ +VF+ TKR D L AH A+ Y E LHGD+ QSQR+R ++ FR G +IL+A
Sbjct: 242 YDP-ELSLVFSNTKRGVDDLTAHLQARGYFAEGLHGDMKQSQRDRVMAKFRAGTIDILVA 300
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARG+DV +VDLV
Sbjct: 301 TDVAARGIDVEDVDLV 316
>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
Length = 633
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 193/321 (60%), Gaps = 13/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L ++ +++AL G PIQ A + + GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFSDLALNSTLLSALNEMGFVTPTPIQSAAIPLLLAGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
+K+ K P +V+APTRELA QV E ++ L + +YGG I QM
Sbjct: 66 NKLDLTQYK------PQAIVMAPTRELAIQVAAEIKTLGKNIKGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G +VGTPGRV DLI R L+L E VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 120 RALKSGAHIIVGTPGRVKDLITRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQSPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q ++FSATMPP ++ + +++L++P VD+ G S+Q +A Y + + + ++
Sbjct: 180 TAQRVLFSATMPPIVKDIVDRFLRDPARVDVAG-SNQTVAKVEQQYWVVKGVEKDEAMAR 238
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G
Sbjct: 239 LLETEETDA--SIVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVI 296
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDV ARGLDVP ++ V
Sbjct: 297 DILVATDVVARGLDVPRINHV 317
>gi|397686716|ref|YP_006524035.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
gi|395808272|gb|AFN77677.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM
10701]
Length = 553
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 194/316 (61%), Gaps = 13/316 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL K
Sbjct: 8 FAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F + P + + +YGG P+ Q++A
Sbjct: 68 IDPAR------REPQALILAPTRELALQVATAFETYSKQMPGVGVVAIYGGAPMGPQLKA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G +V TPGR++D + RN+ LS +QF+VLDEAD+ML +GF +D+EVI E +P++R
Sbjct: 122 IRQGAQIIVATPGRLVDHLSRNSALLSTIQFLVLDEADEMLKLGFMDDLEVIFEAMPESR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
QS++FSAT+P IR++ K+L+ P + + + Q +A + + + + P+++ L
Sbjct: 182 QSVLFSATLPHSIRAIAEKHLREPQHIKIAAKT-QTVARIEQAHLMVHADQKIPAVLRLL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 241 EVEDFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNV 412
++ATDVAARGLDV +
Sbjct: 299 VVATDVAARGLDVARI 314
>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|431036552|ref|ZP_19492322.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|431752972|ref|ZP_19541651.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|431763081|ref|ZP_19551634.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|430563092|gb|ELB02323.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|430612933|gb|ELB49957.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|430622775|gb|ELB59485.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
Length = 503
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 197/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI +E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRHELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++K+P V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKSPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|291452821|ref|ZP_06592211.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
gi|291355770|gb|EFE82672.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
Length = 789
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/346 (38%), Positives = 207/346 (59%), Gaps = 13/346 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L + + +V LA+ G++K FPIQ A + A+ G+D++GR RTG+GKTL+FG+P+
Sbjct: 71 GVTFASLGLPEGVVRKLAQNGVTKPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPL 130
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM 215
L + H + P ++L PTRELA QV L V GGT + +Q+
Sbjct: 131 LASLAG---GHTEKKKPRGVILTPTRELAMQVADALQPYGDVLGLRMKVVCGGTSMGNQI 187
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL+ GVD +V TPGR+ D+I R A +L ++ +LDEADQM +GF +V +L+++P+
Sbjct: 188 YALERGVDILVATPGRLRDIINRGACSLENIEIAILDEADQMSDLGFMPEVTELLDQVPE 247
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
Q M+FSATM I SL +YLKNP++ ++ D+ Q +S + + +K + G
Sbjct: 248 GGQRMLFSATMENEISSLVKRYLKNPVSHEV--DAAQGAVTTMSHHILIVKPRDKAPVTG 305
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRF 394
+ A+ G+ I+F +T+ ADR+A + +S + LHG ++Q R RTL+ F+DG
Sbjct: 306 AIA---ARKGRTIIFVRTQLGADRVAEQLRESGVKADALHGGMTQGARTRTLADFKDGHV 362
Query: 395 NILIATDVAARGLDVPNVDLVELV--VLERKEVQFLSTQISRPGKS 438
N+L+ATDVAARG+ V +DLV V + K+ S + +R G+S
Sbjct: 363 NVLVATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRS 408
>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
Length = 513
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 196/317 (61%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L ++ ++++A+ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N R LV+APTRELA Q ++E + VYGG I Q+R
Sbjct: 61 NKIDADN------RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R L L V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 115 GLKDRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQ 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+++ K++K P V + + + AD I Y + + +EK I+ +
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKQPEHVKI--KAKEMTADLIDQYYVRSKDFEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F++G +
Sbjct: 233 LLDVQTP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis ARO1/DG]
gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TUSoD Ef11]
gi|384517892|ref|YP_005705197.1| DEAD/DEAH box helicase [Enterococcus faecalis 62]
gi|397699239|ref|YP_006537027.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|428766354|ref|YP_007152465.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|430358725|ref|ZP_19425485.1| helicase [Enterococcus faecalis OG1X]
gi|430367031|ref|ZP_19427744.1| helicase [Enterococcus faecalis M7]
gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TUSoD Ef11]
gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
gi|397335878|gb|AFO43550.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|427184527|emb|CCO71751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|429513550|gb|ELA03129.1| helicase [Enterococcus faecalis OG1X]
gi|429516845|gb|ELA06321.1| helicase [Enterococcus faecalis M7]
Length = 515
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 196/317 (61%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L ++ ++++A+ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI N R LV+APTRELA Q ++E + VYGG I Q+R
Sbjct: 61 NKIDADN------RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R L L V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 115 GLKDRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQ 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+++ K++K P V + + + AD I Y + + +EK I+ +
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKQPEHVKI--KAKEMTADLIDQYYVRSKDFEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F++G +
Sbjct: 233 LLDVQTP-ELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/320 (40%), Positives = 194/320 (60%), Gaps = 12/320 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GIS P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 13 NFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 72
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + A PSL + VYGG + Q+R
Sbjct: 73 KL-NLDKRH-----PQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLR 126
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+L ++ +VLDEADQML +GF DVE IL+ +P
Sbjct: 127 KLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYR 186
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMP IR L Y+ P+ V + S ++ + T ++ +++
Sbjct: 187 RQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDM 246
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L T+ ++F +TKR A +L + + + LHGD+SQ++RE+ + AFR+ +
Sbjct: 247 LNTDRPY--LAVIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQ 304
Query: 396 ILIATDVAARGLDVPNVDLV 415
+L+ATDVAARGLDV V V
Sbjct: 305 LLVATDVAARGLDVEGVTHV 324
>gi|421490441|ref|ZP_15937813.1| DEAD/DEAH box helicase [Streptococcus anginosus SK1138]
gi|400372931|gb|EJP25866.1| DEAD/DEAH box helicase [Streptococcus anginosus SK1138]
Length = 534
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 197/320 (61%), Gaps = 16/320 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L+K
Sbjct: 19 FNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 78
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
I NP+ LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 79 I--------NTENPVVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 130
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 131 ALHSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEE 190
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K P V + + + + + Y I EK + +
Sbjct: 191 RQTLLFSATMPDAIKRIGVKFMKEPTHVKIA--AKELTTELVDQYYIRVKENEKFDTMTR 248
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q +R R L F++G +
Sbjct: 249 LM-DVEQPELSIVFGRTKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLD 307
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 308 ILVATDVAARGLDISGVTHV 327
>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
Length = 594
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 191/319 (59%), Gaps = 14/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +SQ+++ A+ G + PIQ + + G+D +G+A+TGTGKT AFG+PIL+K
Sbjct: 5 FTELGLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPILEK 64
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I G++ LVL PTRELA QV +E + A + + +YGG PI Q+RA
Sbjct: 65 I-------ASGKSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRA 117
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGRVID ++R L L+E + VVLDEAD+ML +GF ED+E+ILE+ P +
Sbjct: 118 LAKGAQVVVGTPGRVIDHLQRGTLRLNEARIVVLDEADEMLDMGFREDIELILEQSPADC 177
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q ++FSATMP IR L+ ++L+ P + + I Y+K + ++
Sbjct: 178 QRVLFSATMPQPIRELSKRFLREPEMLTIA--HKMLTVPAIEQVYYEVRPYQKMDALCRV 235
Query: 338 ITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ K +VF TKR D + H + Y + LHGD++Q+QR+R +S FR I
Sbjct: 236 LDSQGF-RKALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEI 294
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARG+DV +VD V
Sbjct: 295 LVATDVAARGIDVDDVDAV 313
>gi|427702212|ref|YP_007045434.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345380|gb|AFY28093.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 640
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 198/321 (61%), Gaps = 17/321 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + Q+++ LA G + PIQKA + M GRD++G+A+TGTGKT AFG+P+L++
Sbjct: 80 FAAFGLRQELLDGLAAIGFEEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFGLPLLER 139
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI---CVYGGTPISHQMRA 217
+ R P LVL PTRELA QV + F+ A + + VYGG Q++
Sbjct: 140 LDPGQ------RTPQVLVLTPTRELAMQVAEAFNSYAARMKGVKVLPVYGGADFRDQIQQ 193
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRV+D +++ L+LS ++ +VLDEAD+ML +GF +DV+ +LE+LP R
Sbjct: 194 LRRGVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVKWVLEQLPAER 253
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG--ISLYSIATSMYEKPSIIG 335
Q ++FSATMPP IR ++ +L+NP + + QK ADG I + + +K +
Sbjct: 254 QVVLFSATMPPEIRRISQNHLRNPAEITI----RQKAADGRRIRQRHLVVNGPQKLEALE 309
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF 394
+++ G I+F +TK +A ++ + Y+ L+GD+ Q+QRERT+ RDGR
Sbjct: 310 RVLEAEGSEG-VIIFARTKAITLTVAESLEQHGYDVAVLNGDVPQTQRERTIERLRDGRV 368
Query: 395 NILIATDVAARGLDVPNVDLV 415
N+L+ATDVAARGLDV + LV
Sbjct: 369 NVLVATDVAARGLDVDRIGLV 389
>gi|383755140|ref|YP_005434043.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381367192|dbj|BAL84020.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 526
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 203/324 (62%), Gaps = 20/324 (6%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
K E + ++++S+ ++ AL G + PIQ + ++G D+IG+A+TGTGKT AFG
Sbjct: 2 KQELKNFGEIELSRKVLQALREMGFEEPSPIQAQTIPLTLEGHDVIGQAQTGTGKTAAFG 61
Query: 155 IPILDKII-KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPI 211
IP ++KI KF++ L+L PTRELA Q +E ++ + T+ +YGG I
Sbjct: 62 IPTVEKIAEKFHKVQ-------ALILTPTRELAIQTAEELNKIGKFKRVRTLPIYGGQSI 114
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+R+L GV AVVGTPGR++D + R L+L VQ +VLDEAD+ML +GF +D+E I++
Sbjct: 115 DRQIRSLKRGVHAVVGTPGRLLDHLNRGTLDLENVQTLVLDEADEMLDMGFIDDIENIIK 174
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
++P RQ+++FSATMP I L+ +Y+++P V + ++ +++ I YE
Sbjct: 175 QIPDGRQTLLFSATMPGPIEKLSRRYMEHPQRVTITKEN-------LTVPLIDQLYYETR 227
Query: 332 SIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSA 388
L + + + GK I+F +TKR D L ++ A+ Y+ LHGD+SQ QR+R +
Sbjct: 228 EKFEGLCRVLDVEETGKLIIFCRTKRAVDDLTASLEARGYSAGGLHGDLSQIQRDRVMKR 287
Query: 389 FRDGRFNILIATDVAARGLDVPNV 412
FR+GR +ILIATDVAARG+D+ ++
Sbjct: 288 FREGRIDILIATDVAARGIDIDDI 311
>gi|449880947|ref|ZP_21784188.1| ATP-dependent RNA helicase [Streptococcus mutans SA38]
gi|449925904|ref|ZP_21800489.1| ATP-dependent RNA helicase [Streptococcus mutans 4SM1]
gi|449161097|gb|EMB64311.1| ATP-dependent RNA helicase [Streptococcus mutans 4SM1]
gi|449252101|gb|EMC50090.1| ATP-dependent RNA helicase [Streptococcus mutans SA38]
Length = 517
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 199/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A+ G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALDGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
Length = 520
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 193/315 (61%), Gaps = 11/315 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S D++ + G PIQ+ + ++G+D+IG+A+TGTGKTLAFG +L KI K
Sbjct: 9 LGLSSDVLKGIEMMGYVSPSPIQEKSIPVLLEGQDIIGQAQTGTGKTLAFGSVLLSKIQK 68
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
G++ L+L+PTRELA Q+ +E +L + V+GG+ I Q++ L G
Sbjct: 69 ------EGKHVKALILSPTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKDLKRG 122
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
D VVGTPGRV DL++R L ++ + F+VLDEAD+ML++GF ED+E IL+ P N+Q+++
Sbjct: 123 ADIVVGTPGRVQDLMRRRVLKINNIDFMVLDEADEMLNMGFVEDIETILKATPDNKQTVL 182
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I+ + + Y+++ + + S K A +S Y T K + +++ +
Sbjct: 183 FSATMPATIKKIASNYMQDDY-MHIQIKSKTKTASTVSQYYFETRPTNKFETLCRIL-DS 240
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ I+F +TKR D + +M K Y+ E +HGD+SQ+QR TL F+ G L+AT
Sbjct: 241 RQMENTIIFCKTKRSVDEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLVAT 300
Query: 401 DVAARGLDVPNVDLV 415
DVAARG+DV N+ V
Sbjct: 301 DVAARGIDVDNISHV 315
>gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
Length = 499
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 209/364 (57%), Gaps = 18/364 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ I DIVAAL GI+ FPIQ L A+ +D+IG+A+TGTGKTL FG+P++
Sbjct: 6 FADFGIHPDIVAALEAGGITHPFPIQSMTLPVALDRQDIIGQAKTGTGKTLGFGVPMVQN 65
Query: 161 IIKFN----EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
++ N ++ R P L +APTRELA QV + +A L + VYGG Q
Sbjct: 66 VVGPNHEGYDQLERPGAPQALAVAPTRELALQVATDLERAAARLGVRVLTVYGGRAYEPQ 125
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL+ GV+ VVGTPGR+IDL +R L L+ + VVLDEAD+ML +GF DVE +L P
Sbjct: 126 IEALERGVEIVVGTPGRLIDLAERGHLTLAHARTVVLDEADEMLDLGFLPDVEKLLAMTP 185
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-----E 329
R +M+FSATMP + ++ +Y+ P + + ++ G ++ +I +Y +
Sbjct: 186 AGRHTMLFSATMPGAVVAMARRYMNQPTHIRAM---EEVPGAGATVEAIDQFVYRAHAMD 242
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSA 388
K ++ +L+ + G IVFT+TKR A ++A + + + +HGD+ Q RE+ L A
Sbjct: 243 KVEMVARLLQSEGR-GLTIVFTRTKRTAAKVAEQLVERGFAAAAIHGDLGQGAREQALRA 301
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLD 446
FR G+ ++L+ATDVAARG+DV +V V E +L + R GK+ V ++D
Sbjct: 302 FRTGKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRIGRTGRAGKNGVAVTLVD 361
Query: 447 ADLL 450
D L
Sbjct: 362 WDDL 365
>gi|383828834|ref|ZP_09983923.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383461487|gb|EID53577.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 545
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 207/355 (58%), Gaps = 11/355 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + DIV AL GI + F IQ L A+ G D+IG+ARTGTGKTL FG+P+L +
Sbjct: 15 FAELGVHPDIVRALDASGIERAFDIQALTLPIALSGEDVIGQARTGTGKTLGFGVPLLQR 74
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRAL 218
+ + P LV+ PTREL QV ++ ++ L +YGG P Q+++L
Sbjct: 75 LALPGDG-----TPQALVVVPTRELCVQVSQDLQKAGKHLGVRIASIYGGRPYESQIKSL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD V+GTPGR++DL ++ L LS+V +VLDEAD+ML +GF D+E IL +P+ RQ
Sbjct: 130 RDGVDVVIGTPGRLLDLAEQRHLVLSKVATLVLDEADEMLDLGFLPDIERILRMVPEKRQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L +L+ P + + + + + + +KP ++ +++
Sbjct: 190 TMLFSATMPGPILTLARTFLRQPTHIRAEDHEASAVHERTTQFVYRSHSLDKPELVAKVL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
++ G ++FT+TKR A ++A + + + +HGD+ Q RE+ L AFR G+ ++L
Sbjct: 250 QAESR-GLTMIFTRTKRTAQKVADDLTERGFAAAAVHGDLGQGAREQALRAFRSGKVDVL 308
Query: 398 IATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDADLL 450
+ATDVAARG+DV +V V E ++ + R GK+ V ++D D L
Sbjct: 309 VATDVAARGIDVDDVTHVVNYQTPEDEKTYVHRIGRTGRAGKTGVAITLVDWDEL 363
>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
Length = 618
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/317 (41%), Positives = 192/317 (60%), Gaps = 13/317 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++++I++AL G PIQ A + M G D +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLDLAENILSALDAIGFVSPTPIQAASIPLLMTGVDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMR 216
K+ G+ R P +V+APTRELA QV E +D + V YGG I QMR
Sbjct: 67 KL-----DLGQ-RKPQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R L L EV VLDEAD+ML +GF +DV I+E+ P++
Sbjct: 121 ALRAGAHIVVGTPGRVKDLINRERLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPES 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+ P +D+ G + + + + EK + +
Sbjct: 181 AQRVLFSATMPPMVKEIVDRFLREPARIDVAGSN--RTVEKVEQQFWVVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E + IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G +
Sbjct: 239 LL-ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVID 297
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDV ARGLDVP +
Sbjct: 298 ILVATDVVARGLDVPRI 314
>gi|374581781|ref|ZP_09654875.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374417863|gb|EHQ90298.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 535
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 195/319 (61%), Gaps = 25/319 (7%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +S+ ++ AL+ G + PIQK + A+ G D+IG+A+TGTGKT AFGIPI +K+
Sbjct: 12 IQLSKQLLQALSEMGFEEPSPIQKQAIPVALDGVDLIGQAQTGTGKTAAFGIPITEKV-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG 221
N K + L++ PTRELA QV +E + + + +YGG PI Q+RAL G
Sbjct: 70 -NSKF---QAVQALIVTPTRELAIQVSEEIAKLGKYRHVKPLPIYGGQPIDRQIRALRMG 125
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSM 280
VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E +L +P + RQ +
Sbjct: 126 YQVVVGTPGRLLDHLNRGTLRLQHVKMVVLDEADEMLDMGFIDDIESLLREVPEEGRQVL 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSIIG 335
+FSATMPP IR L Y+ P +V + D +++ I YE K +G
Sbjct: 186 LFSATMPPGIRKLAQTYMNAPRSVTVSRDE-------LTVPLIDQVFYETRESIKVDALG 238
Query: 336 QLI-TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
++I TE G+ I+F +TKR D L ++ A+ Y + LHGD+SQ QR+R + FRDG+
Sbjct: 239 RIIDTEDI--GQGIIFCRTKRGVDELVVSLEARGYFADALHGDLSQQQRDRVMKRFRDGK 296
Query: 394 FNILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ NV
Sbjct: 297 TELLVATDVAARGLDINNV 315
>gi|422558548|ref|ZP_16634288.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
Length = 564
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 190/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 55 FANLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 115 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 173
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 234 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 293
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + + + +HGD++Q RE+ L FR G
Sbjct: 294 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 353 EATILVATDVAARGIDVTGVSHV 375
>gi|104780746|ref|YP_607244.1| DEAD/DEAH box helicase [Pseudomonas entomophila L48]
gi|95109733|emb|CAK14434.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
entomophila L48]
Length = 562
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/317 (41%), Positives = 195/317 (61%), Gaps = 15/317 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L+++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+K
Sbjct: 8 FAALELNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA
Sbjct: 68 IDVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQ 336
Q+++FSAT+P IRS+ ++L+ P V + S + I + +K P+++
Sbjct: 182 QTVLFSATLPSSIRSIAERHLREPKHVKI--QSKTQTVTAIDQAHLMVHADQKIPAVLRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +
Sbjct: 240 LEVEEFDA--LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297
Query: 396 ILIATDVAARGLDVPNV 412
I++ATDVAARGLDVP +
Sbjct: 298 IVVATDVAARGLDVPRI 314
>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 597
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 193/323 (59%), Gaps = 8/323 (2%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+GL LDI + AA++ G PIQ A + P M GRD++G A+TGTGKT AF IP
Sbjct: 15 DGLTFDDLDIDSRVRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIP 74
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISH 213
IL ++ + G R P LVLAPTRELA QV + F + P + + +YGG
Sbjct: 75 ILSRLEGAGDGSGP-RKPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGV 133
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ L G +VGTPGRVID + R L++SE++F+VLDEAD+ML++GFAEDVE IL
Sbjct: 134 QLAGLRRGAQVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAET 193
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P ++Q +FSATMP IR L +YL +P + + S A I+ + S K
Sbjct: 194 PDDKQVALFSATMPSAIRRLAQRYLNDPQEITV--KSKTATAQNITQRYLQVSHQRKLDA 251
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ + + E IVF +TK+ + LA + ++ ++ ++GD++Q+QRERT++ + G
Sbjct: 252 LTRFL-EVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSG 310
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLDV + V
Sbjct: 311 GIDILVATDVAARGLDVDRISHV 333
>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 455
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 197/325 (60%), Gaps = 8/325 (2%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
S+ ++ ++L ++Q+I ALA + I F IQ L A++GRD+IG+ARTG GKTL
Sbjct: 2 STSNQKPTFTELGVAQEITDALAAQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLG 61
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
FG+P+LD+I + P L++ PTREL QV ++ +A +L +YGGTP
Sbjct: 62 FGVPVLDRIFDDADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTP 121
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q +AL G D VVGTPGR+IDL R L L V+ +VLDEAD+ML +GF +E I+
Sbjct: 122 YEEQEKALKDGTDLVVGTPGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIEKII 181
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV--DLVGDSDQKLADGISLYSIATSMY 328
+ Q+M+FSATMP I L ++ P+ + ++ G+++ ++ +
Sbjct: 182 AGITAEHQTMLFSATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFK--SHRM 239
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLS 387
+K ++I +++ + G+ I+F +TKR A +A +A + + +HGD+SQS RER+L
Sbjct: 240 DKVAVISRVLQARGR-GRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQ 298
Query: 388 AFRDGRFNILIATDVAARGLDVPNV 412
FRDG +IL+ATDVAARG+D+ +V
Sbjct: 299 GFRDGVVDILVATDVAARGIDIDDV 323
>gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
Length = 435
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 197/319 (61%), Gaps = 11/319 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D L ++ ++A L +GI PIQ + AM GRD++G A+TG+GKT AFG+P++
Sbjct: 1 MDFDMLGLAPRLIAELKSQGIIDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMR 216
D ++K K G+ L+LAPTRELAKQ+++ + L T+ V GG I+ Q+R
Sbjct: 61 DMLLKEQGKP-EGKTARALILAPTRELAKQIQENLAAYTQGTHLKTMLVVGGAGITGQIR 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ GVD +V TPGR+IDL++R A+ L + +F+VLDEADQML +GF + I L
Sbjct: 120 KLERGVDLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPE 179
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPL--TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP + L +LKNP+ VD G +++ + + A K ++
Sbjct: 180 RQTMLFSATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAA----KTDLL 235
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+LI +H + + IVF +TK +++L +A K + +HG+ SQ QR+R ++ F+ G+
Sbjct: 236 LELIDKH-RDERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGK 294
Query: 394 FNILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+P V
Sbjct: 295 VKILVATDVAARGLDIPEV 313
>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
Length = 524
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + R G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIERAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
Length = 470
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 188/301 (62%), Gaps = 12/301 (3%)
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177
G + PIQ + A++G+D+IG+A+TGTGKT AFGIP+++KI N N L
Sbjct: 2 GFEEATPIQAGAIPLALEGKDVIGQAQTGTGKTTAFGIPMVEKIDVKNP------NVQGL 55
Query: 178 VLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
++APTRELA QV +E ++ ++ + VYGG I Q+RA+ +VGTPGR++D
Sbjct: 56 IIAPTRELAIQVSEELYKIGQDKRVNVLAVYGGQDIQRQIRAMKKNPHIIVGTPGRMLDH 115
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295
I R L L V +VLDEAD+ML++GF ED+E IL+ +P NRQ+++FSATMP IR + N
Sbjct: 116 INRRTLKLGNVSTLVLDEADEMLNMGFIEDIESILKNVPDNRQTLLFSATMPGPIRKIAN 175
Query: 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355
++ +P TV + S + I Y + EK ++ +L+ + I+F +TKR
Sbjct: 176 NFMTDPETVSV--KSKEMTVPHIEQYFVKAHEKEKFDVLSRLLDVQSP-ELAIIFGRTKR 232
Query: 356 DADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414
D LA A+ + Y+ E +HGD+SQ++R L F++GR ++L+ATDVAARGLD+ V
Sbjct: 233 RVDELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVATDVAARGLDISGVTH 292
Query: 415 V 415
V
Sbjct: 293 V 293
>gi|333895980|ref|YP_004469854.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111245|gb|AEF16182.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 513
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 214/370 (57%), Gaps = 15/370 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L +++ I+ A+ G + IQ V+ ++G D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELHLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ F+ G+ CLVL PTRELA QV E + + VYGG I Q++
Sbjct: 61 NN---FSSNDGK---VFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A+ GVD VVGTPGRV+DLIKRN L+L V+++V+DEAD+M+ +GF +D++ I+ +
Sbjct: 115 AIKRGVDIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+MMFSATMP I++L KY+K+ + ++ Y + S+
Sbjct: 175 RQTMMFSATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRI 234
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L E I+F +TK++ D L M ++ YN E +HGD+SQ+QR TL F++G +
Sbjct: 235 LDVEEP--SSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILD 292
Query: 396 ILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKSRVLSEMLDADLLSSQGS 455
L+ATDVAARG+D+ NV V L ++V+ +I R G++ + L++S+
Sbjct: 293 FLVATDVAARGIDIENVTHVINYNLP-QDVESYVHRIGRTGRAN--RSGVAYTLVTSREY 349
Query: 456 P-LKEVETCT 464
P LK +E T
Sbjct: 350 PALKRIEKAT 359
>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|438001218|ref|YP_007270961.1| Cold-shock DEAD-box protein A [Tepidanaerobacter acetatoxydans Re1]
gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter
acetatoxydans Re1]
gi|432178012|emb|CCP24985.1| Cold-shock DEAD-box protein A [Tepidanaerobacter acetatoxydans Re1]
Length = 529
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 191/313 (61%), Gaps = 13/313 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S++++ A+ G + PIQ + +GRD+IG+A+TGTGKT AFG+PIL
Sbjct: 4 MKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGLPIL 63
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
D +I ++K N ++L PTRELA QV +E + + + VYGG PI Q+
Sbjct: 64 D-MIDTDDK-----NQQAIILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQI 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV ++GTPGRV+D ++R+ L L + VVLDEAD+ML +GF ED+E ILE P+
Sbjct: 118 HALKRGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPK 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ++MFSAT+P I L +YL NP + +V + + Y +K +
Sbjct: 178 ARQTLMFSATIPKPILELAERYLNNPQLIKVV--HKELTVPSVEQYYFEVKERDKVEALS 235
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+LI + +VF TK+ D L + A+ Y+ + LHGD+SQSQR+R ++ F++G
Sbjct: 236 RLI-DFYNPNLALVFCNTKKRVDELMEQLQARGYSADGLHGDMSQSQRDRVMTKFKNGTI 294
Query: 395 NILIATDVAARGL 407
+IL+ATDVAARGL
Sbjct: 295 DILVATDVAARGL 307
>gi|429730318|ref|ZP_19264966.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Corynebacterium durum F0235]
gi|429147909|gb|EKX90927.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Corynebacterium durum F0235]
Length = 446
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 190/315 (60%), Gaps = 4/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +I AL GI F IQ+ L A+ G D+IG+ARTG GKTL FG+P+LD+
Sbjct: 10 FAQLGVAIEITDALDSFGIQHTFAIQELTLPLALDGIDLIGQARTGQGKTLGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRAL 218
I + P LV+ PTRELA QV + H +A +L + +YGG P Q+ AL
Sbjct: 70 IFDSADIAELDGTPRALVVTPTRELAIQVADDLHRAAKNLPVRILTIYGGRPYEEQINAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
D G+D VVGTPGR++DL +R +L L +V +VLDEAD+ML++GF +E +L+ L Q
Sbjct: 130 DKGIDVVVGTPGRLLDLYQRGSLTLDQVAILVLDEADEMLNLGFLPAIEKLLKALTHKHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L ++ P+ + + I +K +++ +++
Sbjct: 190 TMLFSATMPGPIVTLARTFMHKPVHIRAEEPDAAQTNQDIRQVVFQAHRMDKVAVVSRIL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+F +TKR A LA+ +A S + +HGD+ Q RE++L+AFR G IL
Sbjct: 250 QAQGR-GKTIIFARTKRSAAELANDLAASGFLVGAVHGDMGQPAREKSLTAFRSGDIEIL 308
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARG+D+ +V
Sbjct: 309 VATDVAARGIDIDDV 323
>gi|254452993|ref|ZP_05066430.1| ATP-dependent RNA helicase RhlE [Octadecabacter arcticus 238]
gi|198267399|gb|EDY91669.1| ATP-dependent RNA helicase RhlE [Octadecabacter arcticus 238]
Length = 439
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 197/317 (62%), Gaps = 11/317 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L ++ ++A L +GI PIQ + AM GRD++G A+TG+GKT AFG+P++D ++K
Sbjct: 2 LGLAPRLIAELKSQGIVDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLLK 61
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYG 221
K G+ L+LAPTRELAKQ+++ E + L T+ V GG I+ Q+R L+ G
Sbjct: 62 EQGKP-EGKTARALILAPTRELAKQIQENLEAYTKGTHLKTMLVVGGAGITGQIRKLERG 120
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD +V TPGR+IDL++R A+ L + +F+VLDEADQML +GF + I L RQ+M+
Sbjct: 121 VDLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTML 180
Query: 282 FSATMPPWIRSLTNKYLKNPL--TVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
FSATMP + L +LKNP+ VD G +++ + + A K ++ +LI
Sbjct: 181 FSATMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAA----KTDLLLELID 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
+H + + IVF +TK +++L +A K + +HG+ SQ QR+R ++ F+ G+ IL+
Sbjct: 237 KH-RDERAIVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVTILV 295
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARGLD+P V V
Sbjct: 296 ATDVAARGLDIPEVKHV 312
>gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 557
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 222/391 (56%), Gaps = 30/391 (7%)
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDIS 102
V P H+ + ++GT P I A + V D D + + + D++
Sbjct: 11 VEPSHNSTDEQTITSGT------GTPAFASGIIETAGAHAPVLDEATPDITDEGDQTDLT 64
Query: 103 K-----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
+ + +I ALA +GI+ FPIQ L A++G+D+IG+A+TGTGKTL FGIP+
Sbjct: 65 RKTFADFGVEPEICEALAAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPL 124
Query: 158 LDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTP 210
L + ++E G +P LV+ PTRELAKQV +E +A ++ + VYGG
Sbjct: 125 LMDTLGPGEEGWDEDPASG-SPQGLVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRA 183
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ L+ G + VVGTPGR+IDL+ R L+L+ V VVLDEAD+ML +GF DVE IL
Sbjct: 184 YEPQIEDLERGAEVVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKIL 243
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY-- 328
R +R +M+FSATMP + +L +Y+ P + D+ G+++ ++ +Y
Sbjct: 244 ARTRADRHTMLFSATMPGAVVTLARRYMTRPTHIRAQDPGDE----GMTVQTVQQVVYRT 299
Query: 329 ---EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
K ++ +++ + G+ I+F +TKR A R+A + A+ + LHGD+ Q RE+
Sbjct: 300 HSMNKVEVVARILQAEGR-GRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQ 358
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
L AFR+ + ++L+ATDVAARG+DV +V V
Sbjct: 359 ALRAFRNDKVDVLVATDVAARGIDVDDVTHV 389
>gi|116253340|ref|YP_769178.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. viciae 3841]
gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 576
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 195/320 (60%), Gaps = 8/320 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 18 NFESLGVSKPIVATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 77
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + SL V GG I+ Q
Sbjct: 78 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQ 136
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 137 LEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 196
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++ +
Sbjct: 197 QTMLFSATMPKAIADLAGEYLVDPVKVEVT--PPGKAADKVEQYVHFVGGKNDKTELLRK 254
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G+ +VF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 255 SLTENPD-GRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 313
Query: 396 ILIATDVAARGLDVPNVDLV 415
LIATDVAARG+D+P V V
Sbjct: 314 TLIATDVAARGIDIPAVSHV 333
>gi|392956024|ref|ZP_10321554.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
gi|391878266|gb|EIT86856.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
Length = 514
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 194/317 (61%), Gaps = 12/317 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L +S +++ ++ G + PIQ+ + A+QG D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SELGLSPELLKSINNMGFEEATPIQRDTIPTALQGTDLIGQAQTGTGKTAAFGIPLIEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ R +VLAPTRELA QV +E ++ + T+ +YGG I Q++AL
Sbjct: 65 ------DVKSRKIQGIVLAPTRELAVQVGEELNKIGQYKGIKTLPIYGGQSIVRQIKALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRVID I R L L +V VVLDEAD+ML++GF ED+E ILE +P R +
Sbjct: 119 GGPHIIVGTPGRVIDHINRKTLKLEDVHTVVLDEADEMLNMGFIEDIETILENVPTERHT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
M+FSATMP I+ L +++K+ L + + + + I + +K + +L+
Sbjct: 179 MLFSATMPKQIQKLAERFMKDVLIIRV--KASEMTVKSIEQEYVEVKEKQKFDALTRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
H+ I+F +TKR D L A+ K Y+ E +HGD+ Q++R+ L AF++ +L+
Sbjct: 237 IHSP-ELAIIFGRTKRRVDELTEALNKRGYSAEGIHGDLPQNKRDMVLRAFKNNTIEVLV 295
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARGLD+ V V
Sbjct: 296 ATDVAARGLDISGVSHV 312
>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
Length = 658
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 196/325 (60%), Gaps = 13/325 (4%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S+ D L + + A+A+ G + PIQ + M+GRD++G A+TGTGKT
Sbjct: 53 NSANDNPQGFGNLGLPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTGKTA 112
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGG 208
AF +P+L +I N +H P LVLAPTRELA QV F A L + + +YGG
Sbjct: 113 AFALPVLSQI-DVNARH-----PQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGG 166
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S+++F+VLDEAD+ML++GF EDVE
Sbjct: 167 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVER 226
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY 328
IL P+ +Q +FSATMP IR L+ KYL +P V + S+Q+ D I + T+
Sbjct: 227 ILADTPEEKQVALFSATMPNSIRRLSKKYLNSPAEVTV--KSEQRTNDNIKQRFLLTAHR 284
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLS 387
K +++ E IVF +TK + + +A + + YN ++GDI+Q+QRERT+
Sbjct: 285 AKLDAFTRIL-EVTDYDAMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVD 343
Query: 388 AFRDGRFNILIATDVAARGLDVPNV 412
+DGR +IL+ATDVAARGLDV +
Sbjct: 344 QLKDGRLDILVATDVAARGLDVDRI 368
>gi|389795816|ref|ZP_10198925.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
gi|388430147|gb|EIL87341.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
Length = 622
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 192/316 (60%), Gaps = 13/316 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + D++ LA G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I
Sbjct: 18 LALHPDVLRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRI-- 75
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
N + G+ P LVLAPTRELA QV + F A P + +YGG Q+ AL
Sbjct: 76 -NPRAGK---PQALVLAPTRELAIQVAEAFQRYAAHIPGFQVLPIYGGQSYGPQLHALKR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++F+VLDEAD+ML +GF +DVE +L P RQ
Sbjct: 132 GVHVVVGTPGRVIDHLDKGTLDLSELRFLVLDEADEMLRMGFIDDVEKVLHATPPERQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + ++LK+P+ V ++ S A+ Y + M++ ++ I E
Sbjct: 192 LFSATMPAVIRKIAQRHLKDPVEV-IIKSSTTTAANIHQRYWFVSGMHKLDALT--RILE 248
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
I+F +TK+ + LA + A+ ++GDI+Q+QRER + +DG+ +IL+A
Sbjct: 249 AEPFDAMIIFARTKQATEELAGKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVA 308
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARGLDV + V
Sbjct: 309 TDVAARGLDVDRISHV 324
>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
Length = 539
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 197/320 (61%), Gaps = 16/320 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L+K
Sbjct: 24 FNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 83
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
I NP+ LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 84 I--------NTENPVVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 135
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 136 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEE 195
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K P V + + + + + Y I EK + +
Sbjct: 196 RQTLLFSATMPDAIKRIGVKFMKEPTHVKIA--AKELTTELVDQYYIRVKENEKFDTMTR 253
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q +R R L F++G +
Sbjct: 254 LM-DVEQPELSIVFGRTKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLD 312
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 313 ILVATDVAARGLDISGVTHV 332
>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 455
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 197/325 (60%), Gaps = 8/325 (2%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
S+ ++ ++L ++Q+I ALA + I F IQ L A++GRD+IG+ARTG GKTL
Sbjct: 2 STSNQKPTFTELGVAQEITDALATQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLG 61
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
FG+P+LD+I + P L++ PTREL QV ++ +A +L +YGGTP
Sbjct: 62 FGVPVLDRIFDDADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTP 121
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q +AL G D VVGTPGR+IDL R L L V+ +VLDEAD+ML +GF +E I+
Sbjct: 122 YEEQEKALKDGTDLVVGTPGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIEKII 181
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV--DLVGDSDQKLADGISLYSIATSMY 328
+ Q+M+FSATMP I L ++ P+ + ++ G+++ ++ +
Sbjct: 182 AGITAEHQTMLFSATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFK--SHRM 239
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLS 387
+K ++I +++ + G+ I+F +TKR A +A +A + + +HGD+SQS RER+L
Sbjct: 240 DKVAVISRVLQARGR-GRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQ 298
Query: 388 AFRDGRFNILIATDVAARGLDVPNV 412
FRDG +IL+ATDVAARG+D+ +V
Sbjct: 299 GFRDGVVDILVATDVAARGIDIDDV 323
>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
Length = 657
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 190/319 (59%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +PIL +
Sbjct: 11 FADLGLCSAVMKAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSR 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ F + R P LVLAPTRELA QV + FH A P + VYGG P Q+ A
Sbjct: 71 L-DFAQ-----RKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LSE++ +VLDEAD+ML +GF +DVE +L++LPQ+R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQSR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q +FSATMP I+ + YL +P V ++ A+ Y + +++ ++
Sbjct: 185 QVALFSATMPAAIKRIAQTYLNDPAEV-IIASKTTTSANIRQRYWAVSGLHKLDALT--R 241
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
I E I+F +TK D LA + A+ ++GDI Q+QRER + +DG+ +I
Sbjct: 242 ILEVEPFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDI 301
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLDV + V
Sbjct: 302 LVATDVAARGLDVERISHV 320
>gi|374995988|ref|YP_004971487.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357214354|gb|AET68972.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 536
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 193/316 (61%), Gaps = 23/316 (7%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ I+ AL+ G + PIQ+ + A+ G D+IG+A+TGTGKT AFGIP+ + +
Sbjct: 14 LSKPILQALSEMGFEEPSPIQRQAIPVALDGADLIGQAQTGTGKTAAFGIPVTEMV---- 69
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVD 223
+ R + L++ PTRELA QV +E + + + +YGG PI Q+RAL G
Sbjct: 70 --NSRFQAVQALIVTPTRELAIQVSEEISKLGKYRHVKPLPIYGGQPIDRQIRALRMGYQ 127
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMF 282
VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E +L +P + RQ ++F
Sbjct: 128 VVVGTPGRLLDHLNRGTLRLQHVKVVVLDEADEMLDMGFVDDIESLLREVPAEGRQVLLF 187
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSIIGQL 337
SATMPP IR L Y+ +P +V + D +++ I YE K +G++
Sbjct: 188 SATMPPGIRKLAQTYMNSPRSVTVSRDE-------LTVPLIEQVFYETRESIKVDALGRI 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FRDG+ +
Sbjct: 241 I-DMEDIGQGIIFCRTKRGVDELVVALEARGYFADALHGDLSQQQRDRVMKRFRDGKSEL 299
Query: 397 LIATDVAARGLDVPNV 412
L+ATDVAARGLD+ NV
Sbjct: 300 LVATDVAARGLDINNV 315
>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
Length = 526
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKI-------DTNRNVVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K+++NP V + + + D + Y I +K +
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVA--AKELTTDLVDQYYIRVKEQDKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|399520276|ref|ZP_10761052.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399111717|emb|CCH37611.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 560
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 194/315 (61%), Gaps = 13/315 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +I+AAL G + PIQ + + G+DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGQDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P L+ + VYGG P+ Q++A+
Sbjct: 69 DPTK------REPQALILAPTRELALQVATAFETYSKQMPGLNVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D ++R+ LS +Q +VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
S++FSAT+P IR++ K+L+ P V + + + I + +K + + +L+
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHVKIAAKT--QTVSRIEQAHLMIHADQKTNAVLRLL 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E I F +TK+ LA A+ AK + L+GDI+Q+QRER + + +DGR +I+
Sbjct: 241 -EVEDFDALIAFVRTKQATLDLAAALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIV 299
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARG+DVP +
Sbjct: 300 VATDVAARGIDVPRI 314
>gi|392400091|ref|YP_006436691.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
Cp162]
gi|390531169|gb|AFM06898.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
Cp162]
Length = 441
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 190/318 (59%), Gaps = 4/318 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IG+ARTG GKTL FG+P+LD+
Sbjct: 10 FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA+QV ++ +A + VYGG P Q++ L
Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQVL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q
Sbjct: 130 TAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 190 TLLFSATMPGPVLTLARTFMSRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARAL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+FT+TKR A LA +A + + +HGD+ Q+ RE +L FR+GR +IL
Sbjct: 250 QAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRVDIL 308
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+ +V V
Sbjct: 309 VATDVAARGLDIDDVTHV 326
>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
Length = 744
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 196/322 (60%), Gaps = 7/322 (2%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L + ++AAL G K PIQ+ + ++G D++G A+TGTGKT AF +P
Sbjct: 65 GVRFTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPA 124
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQ 214
L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG+P Q
Sbjct: 125 LSRMAELADVNGISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQ 184
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE ILE P
Sbjct: 185 LAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTP 244
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
++Q +FSATMP IR + +YL +P + + + A+ Y ++ ++
Sbjct: 245 DSKQVALFSATMPNSIRKIAQQYLNDPTEIRVKAKTTTS-ANISQRYMQVMHSHKLDAMT 303
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
L E+ G IVF +TK++ + +A + A+ + ++GDI Q RERT+ A RDGR
Sbjct: 304 RVLEVENYDG--IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGR 361
Query: 394 FNILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLDV + LV
Sbjct: 362 IDILVATDVAARGLDVERISLV 383
>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
Length = 576
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 193/319 (60%), Gaps = 10/319 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + ++ L G + PIQ+ + P ++GRD++G+A TGTGKT AF +P+L +
Sbjct: 21 FAALGLEASLLTTLEALGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQR 80
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
I HG + P LVL PTRELA QV + L + +YGG + Q++AL
Sbjct: 81 I-----AHGPRQRPTALVLVPTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQAL 135
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV+ +V TPGR +D ++R L L+++Q VVLDEAD+ML +GFA+D++ ILE+ P +Q
Sbjct: 136 RRGVEVIVATPGRALDHLRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQ 195
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS-DQKLADGISLYSIATSMYEKPSIIGQL 337
+ +FSATMPP I S+ ++LKNP+ V + + A + + + K S + ++
Sbjct: 196 TALFSATMPPRIASIARRHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQHKVSALARV 255
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ + A +VF +T+ + D + A+ + Y E +HG +SQ QR+R + AFR G+ +
Sbjct: 256 L-DIATPKSALVFCRTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTEL 314
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLD+P+V V
Sbjct: 315 LVATDVAARGLDIPSVSHV 333
>gi|375092115|ref|ZP_09738400.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
gi|374561881|gb|EHR33218.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
Length = 540
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 195/321 (60%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S +++ A+A G K PIQ+ + ++GRD+I RA+TGTGKT AFGIP++
Sbjct: 1 MKFNELNLSNELIKAVADMGYEKPSPIQEKAIPTLLEGRDVIARAQTGTGKTAAFGIPLV 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
+ I +E H +G L+L PTRELAKQV E + A P + +I +YGG+ + Q+
Sbjct: 61 EMI--EDENHIQG-----LILVPTRELAKQVSDEIKKIAKYKPHVKSIAIYGGSDMRRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
++L G + VVGTPGRV+D + R L LS+++F+VLDEAD+M +GF +D++ I+++
Sbjct: 114 KSLKLGTNIVVGTPGRVMDHLNRRTLKLSKLKFLVLDEADEMFDMGFRDDMKTIIDQTNP 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
NRQ+ FSATM I + Y P + + + + + I Y + K I+
Sbjct: 174 NRQTCFFSATMGNDIMEFSKLYQNIPQQILI--EQKELTVEKIKQYYLEMDSKMKKEILN 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + IVF TKR D+L + K YN + LHGD+ QSQR+ + FR
Sbjct: 232 RLLGMY-NPNLSIVFCNTKRMVDQLVTDLTKLGYNVDALHGDMKQSQRDNVMKRFRASTI 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
ILIATD+AARGLDV NVDLV
Sbjct: 291 EILIATDIAARGLDVENVDLV 311
>gi|451943504|ref|YP_007464140.1| hypothetical protein A605_03835 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451902891|gb|AGF71778.1| hypothetical protein A605_03835 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 411
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 183/307 (59%), Gaps = 4/307 (1%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I ALA GI++ F IQ+ L A+ G D+IG+ARTG GKT AFG+P+LD++ +
Sbjct: 2 EICEALAAVGITRTFAIQELTLPLALDGTDLIGQARTGMGKTYAFGVPLLDRVFDSADIE 61
Query: 169 GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVV 226
+P LV+ PTRELA QV ++ +A L +YGG P Q+ AL GVD VV
Sbjct: 62 ELDGSPRALVVVPTRELAVQVGRDLEVAAAKLPVRLATIYGGRPYEEQIEALTEGVDVVV 121
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR++DL R L L +V +VLDEAD+ML +GF D+E IL L Q+M+FSATM
Sbjct: 122 GTPGRLLDLHNRGELKLDKVAVLVLDEADEMLDLGFLPDIEKILAALTHQHQTMLFSATM 181
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P I SL+ ++ P+ + + +KP++ +++ + G+
Sbjct: 182 PGPILSLSRTFMNRPVHIRAEMTGSAQTHSTTEQVVFQAHRMDKPAVTARILQARGR-GR 240
Query: 347 CIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
I+F +TKR A +A +A + + +HGD+ Q RER+L AFRDG +IL+ATDVAAR
Sbjct: 241 TIIFARTKRTAADVAEELAGRGFAVGAVHGDMGQPARERSLKAFRDGTVDILVATDVAAR 300
Query: 406 GLDVPNV 412
G+D+ +V
Sbjct: 301 GIDITDV 307
>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
Length = 528
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI H LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------HTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + +++K+P V + ++L + + Y I EK +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIKA---KELTNVNVDQYFIRVKEQEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + + E +HGD+ Q++R R + F++G+
Sbjct: 232 RLM-DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
Length = 449
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT]
gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT]
Length = 528
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 200/346 (57%), Gaps = 14/346 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L IS +I +A+A G + PIQ+ + + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 EKIKFENLPISDEIKSAIADMGFEEPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISH 213
LD I N RN +VL PTRELA Q +E + L+ + +YGG PI
Sbjct: 62 ALDTIDLNN------RNLQIMVLCPTRELAIQATQEITKLGKYKKGLNVLAIYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV V+GTPGRVID I R L ++ VVLDEAD+ML +GF +D+E I++ +
Sbjct: 116 QIKALKRGVQIVIGTPGRVIDHINRKTLKTDNIKMVVLDEADEMLDMGFRDDIETIIQSV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+NRQ+++FSATMP I L+ KY + +V Q I I K +
Sbjct: 176 PENRQTILFSATMPKAIVELSKKYQTKAEFIKVV--HRQLTVPNIEQRYIEVKENFKIEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +LI + ++F TK+ D + + ++ Y E LHGD+ Q QR+R +S FR+G
Sbjct: 234 LSRLI-DMRNPKLSVIFCNTKKRVDEVVSELQSRGYFAEGLHGDMKQPQRDRVMSKFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
IL+ATDVAARG+DV +V+ V L + E ++ +I R G++
Sbjct: 293 TIEILVATDVAARGIDVDDVEAVFNYDLPQDE-EYYVHRIGRTGRA 337
>gi|345876610|ref|ZP_08828376.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344226322|gb|EGV52659.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 628
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 191/331 (57%), Gaps = 23/331 (6%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S D + L +S+ I+ ALA G PIQ+A + P ++G+D++G+A+TGTGKT AF
Sbjct: 6 STDSPIPFDSLGLSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAAF 65
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTP 210
+P+L +I + K P LVLAPTRELA QV + A + +YGG P
Sbjct: 66 ALPLLSRI-DLSRK-----TPQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYGGQP 119
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
HQ+R L GV VVGTPGRV+D I+R L L + +VLDEAD+ML +GF +DVE IL
Sbjct: 120 YDHQLRQLRRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVEWIL 179
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
E+ PQ RQ +FSATMP IR + ++L +P + K+A S + Y +
Sbjct: 180 EQTPQTRQIALFSATMPSIIRKVAQRHLNDPTEI--------KIAAKTSTATTIRQRYWQ 231
Query: 331 PSIIGQL-----ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
S + +L I E +VF +TK LA + A+ Y E L+GDI Q QRER
Sbjct: 232 VSGLHKLDALTRILECESFDAMLVFVRTKIATVELAEKLEARGYASEALNGDIPQKQRER 291
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
T+ F+ GR +IL+ATDVAARGLDV + V
Sbjct: 292 TVERFKAGRLDILVATDVAARGLDVERISHV 322
>gi|422392322|ref|ZP_16472392.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
gi|422426148|ref|ZP_16503072.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|422433509|ref|ZP_16510377.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|422436072|ref|ZP_16512929.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|422438394|ref|ZP_16515238.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422444387|ref|ZP_16521181.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|422445086|ref|ZP_16521840.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|422462176|ref|ZP_16538800.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|422478561|ref|ZP_16554980.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|422493619|ref|ZP_16569919.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|422501646|ref|ZP_16577900.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|422516579|ref|ZP_16592688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422522165|ref|ZP_16598195.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|422527552|ref|ZP_16603542.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|422543216|ref|ZP_16619066.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|422548140|ref|ZP_16623956.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|422550025|ref|ZP_16625825.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
Length = 564
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 190/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 55 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 115 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 173
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 234 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 293
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + + + +HGD++Q RE+ L FR G
Sbjct: 294 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 353 EATILVATDVAARGIDVTGVSHV 375
>gi|336063871|ref|YP_004558730.1| ATP-dependent RNA helicase [Streptococcus pasteurianus ATCC 43144]
gi|334282071|dbj|BAK29644.1| ATP-dependent RNA helicase [Streptococcus pasteurianus ATCC 43144]
Length = 526
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 200/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKI-------DTNRNVVQTLVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K+++NP V + + + D + Y I +K +
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVA--AKELTTDLVDQYYIRVKEQDKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 526
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 199/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILATVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K+++NP V + + + D + Y I +K +
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVA--AKELTTDLVDQYYIRVKEQDKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLMDVN-QPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|342213561|ref|ZP_08706286.1| DEAD/DEAH box helicase [Propionibacterium sp. CC003-HC2]
gi|340769105|gb|EGR91630.1| DEAD/DEAH box helicase [Propionibacterium sp. CC003-HC2]
Length = 560
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 190/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 289
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + + + +HGD++Q RE+ L FR G
Sbjct: 290 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 349 EATILVATDVAARGIDVTGVSHV 371
>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
Length = 428
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 194/320 (60%), Gaps = 16/320 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + + +S ++ AAL + PIQ A++ A++GRD++G+ARTGTGKT AFGIPI+
Sbjct: 4 INYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPII 63
Query: 159 DKIIKFNEKHG-RGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+++ +HG RNP L+L PTRELA QV E + ++ + VYGG P+ QM
Sbjct: 64 ERL-----EHGPNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQM 118
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L VVGTPGRVIDL+ R AL L ++ VVLDEAD+ML +GF D+E IL R P+
Sbjct: 119 EKLKRAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPE 178
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++ SAT+PP I L +Y++NP VD + A+ I +K ++
Sbjct: 179 ERQTLLLSATVPPTIEKLAQRYMRNPEKVDFSPTNIS--AETIEQRYFTVDHSKKFDMLV 236
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDG 392
+L+ + + K IVF +TKR +R+ ++K +C +HGD+ Q R R LS F+
Sbjct: 237 ELL-KREQPQKAIVFCRTKRGTERITQRLSKKTKLVHC--IHGDMQQGARNRALSDFKAS 293
Query: 393 RFNILIATDVAARGLDVPNV 412
+F +L+ATDV RG+D+ +V
Sbjct: 294 KFRVLVATDVVGRGIDISDV 313
>gi|301108607|ref|XP_002903385.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262097757|gb|EEY55809.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 666
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 198/340 (58%), Gaps = 27/340 (7%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I+ D+SQ+ L R G++ LFP+Q + M+G D++GR++TG+GKTLAF +P ++
Sbjct: 84 IADFDLSQETQRNLERAGVTHLFPVQTQSFDVMMKGSDIMGRSKTGSGKTLAFALPTIET 143
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
I+ N K+ R NP LVL PTRELA+QV + AP L TI V GG + Q L
Sbjct: 144 ILA-NRKNTR--NPQALVLLPTRELAQQVHDQVQRVAPQLRTINVVGGVSYTVQENQLRR 200
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD +VGTPGR++DL+ + +L+L +V VLDEAD ML GF E VE IL +P Q++
Sbjct: 201 GVDILVGTPGRIMDLVDKGSLSLEDVDVSVLDEADMMLKFGFQEAVETILGWVPDGGQTL 260
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+ +DLVGD+D + ++ +I ++ ++ ++
Sbjct: 261 ---------------------VNIDLVGDNDNHVPATVAHKAILAPSRDRIQVLENVLRL 299
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
HA G+ +VFT+TK++AD +A+++ + LHGD+SQ R T++ FR+G L+ T
Sbjct: 300 HAHDGQTLVFTETKQEADEIANSLP-GQDARALHGDLSQGMRTSTMNGFRNGHVKTLVCT 358
Query: 401 DVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
D+AARGLD+ NV+LV L + F+ + + R G+S
Sbjct: 359 DIAARGLDIANVELVVQYRLPSDKESFVHRAGRTGRAGRS 398
>gi|390933807|ref|YP_006391312.1| DEAD/DEAH box helicase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569308|gb|AFK85713.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 513
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 220/371 (59%), Gaps = 17/371 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L++++ I+ A+ G + IQ V+ ++G D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ F+ G+ CL+L PTRELA QV E + + VYGG I Q++
Sbjct: 61 NN---FSSNDGK---VFCLILTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A+ GVD VVGTPGRV+DLIKRN L+L V+++V+DEAD+ML +GF +D++ I+ +
Sbjct: 115 AIKRGVDIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMLDMGFIDDIKEIINHTNRE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+MMFSATMP I++L KY+K N + +V + + + E+ +
Sbjct: 175 RQTMMFSATMPDEIKNLAKKYMKSNAKFISIVKKT--MTVSTVQHFYYEVKNQERFESLC 232
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+++ + + I+F +TK++ D L M ++ YN E +HGD+SQ+QR TL F++G
Sbjct: 233 RIL-DVDEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGIL 291
Query: 395 NILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKSRVLSEMLDADLLSSQG 454
+ L+ATDVAARG+D+ NV V L ++V+ +I R G++ + L++S+
Sbjct: 292 DFLVATDVAARGIDIENVTHVINYNLP-QDVESYVHRIGRTGRAN--RSGVAYTLVTSRE 348
Query: 455 SP-LKEVETCT 464
P LK +E T
Sbjct: 349 YPALKRIEKAT 359
>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
Length = 520
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFATMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
SK187]
gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|365963017|ref|YP_004944583.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965259|ref|YP_004946824.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974190|ref|YP_004955749.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|407935730|ref|YP_006851372.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
gi|417929824|ref|ZP_12573208.1| DEAD/DEAH box helicase [Propionibacterium acnes SK182]
gi|422387668|ref|ZP_16467780.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
gi|422450923|ref|ZP_16527636.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|422453794|ref|ZP_16530481.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|422475550|ref|ZP_16551997.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|422510319|ref|ZP_16586465.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|422524064|ref|ZP_16600073.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|422532031|ref|ZP_16607977.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422537070|ref|ZP_16612958.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|422545096|ref|ZP_16620926.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|422560680|ref|ZP_16636367.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|422579282|ref|ZP_16654805.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
SK187]
gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|340773947|gb|EGR96439.1| DEAD/DEAH box helicase [Propionibacterium acnes SK182]
gi|365739698|gb|AEW83900.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365741940|gb|AEW81634.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744189|gb|AEW79386.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|407904311|gb|AFU41141.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
gi|456738446|gb|EMF63013.1| DEAD/DEAH box helicase [Propionibacterium acnes FZ1/2/0]
Length = 560
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 190/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 289
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + + + +HGD++Q RE+ L FR G
Sbjct: 290 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 349 EATILVATDVAARGIDVTGVSHV 371
>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
Length = 530
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/318 (41%), Positives = 199/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S+ I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTSRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K+++NP V + + + D + Y I +K +
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVA--AKELTTDLVDQYYIRVKEQDKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
14684]
Length = 481
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 191/315 (60%), Gaps = 12/315 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ AL G PIQ+ + P + G DMIG+A+TG+GKT AFG+P+++
Sbjct: 4 FADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLMEY 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRAL 218
+ + R+ LVL PTREL QV + + + +D + V+GG PI Q L
Sbjct: 64 VDPSD------RDVQALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGT GRV DLI R++L L +FVVLDEAD+ML +GF EDVE IL P +RQ
Sbjct: 118 RAGGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+ +FSATMPP IR L+ +YL NP+ V + + D + +S+ S +KP ++G ++
Sbjct: 178 TALFSATMPPEIRKLSERYLYNPVHVKVRAAT--LTVDTVEQFSLEMSQRDKPDMLGTVL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E K + IVF +TK D+L + + N + LHGD+SQ QR+ + +F+ GR IL
Sbjct: 236 -ESEKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPIL 294
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARGLD+ +V
Sbjct: 295 VATDVAARGLDISSV 309
>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 529
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 190/316 (60%), Gaps = 13/316 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
LDI +DI+ AL G PIQ + G+D+IG+A+TGTGKT AFGIP+++++
Sbjct: 9 LDIKKDILKALKELGFEVPTPIQVQAIPHLKMGKDIIGQAQTGTGKTAAFGIPMIERV-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + L++APTREL+ QV E F + T+ +YGG PIS Q++AL
Sbjct: 67 ----NPKNKAVQILIMAPTRELSVQVADEIQKFSNHVIGVKTLAIYGGQPISTQIKALKR 122
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV +VGTPGR++D I R L L EV VVLDEADQML +GF ED+E IL+ P RQ+
Sbjct: 123 GVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQMLDMGFQEDMEAILKETPTERQTA 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSAT+ I + KY+K P + +V + IS Y +EK + +++ +
Sbjct: 183 MFSATISREIERIAQKYMKQPEKI-MVAQKALTVPQ-ISQYYFEVKPHEKVEALCRIL-D 239
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K I+F +TKR D L + + Y+ +HGD+ Q+QR+R + FR+ ++L+A
Sbjct: 240 MDKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTIDLLVA 299
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARG+DV +V++V
Sbjct: 300 TDVAARGIDVNDVEMV 315
>gi|348170820|ref|ZP_08877714.1| putative ATP-dependent RNA helicase [Saccharopolyspora spinosa NRRL
18395]
Length = 495
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/333 (39%), Positives = 199/333 (59%), Gaps = 10/333 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
DIV AL GI + F IQ+ L AMQG D+IG+ARTGTGKTL FG+P+L ++ ++
Sbjct: 4 DIVRALREAGIERTFAIQELTLPLAMQGEDLIGQARTGTGKTLGFGVPLLHRL----QRP 59
Query: 169 GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVV 226
G G P L++ PTREL QV ++ ++ L T+ VYGG P Q+ AL GVD V+
Sbjct: 60 GDG-TPQALIVVPTRELCLQVTRDLTDAGKHLGVRTVAVYGGRPYEEQISALRKGVDVVI 118
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E IL +P+ RQ+M+FSATM
Sbjct: 119 GTPGRLLDLAEQRHLVLGKVRGLVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSATM 178
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P I +L ++ P + + + + + +K +I + + + G
Sbjct: 179 PGPILTLARTFMTQPTHIRAEQADESAVHERTRQFIYRAHAMDKTELIAKALQATDR-GL 237
Query: 347 CIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
++F++TKR A +LA + + + +HGD+ Q RE+ L AFR G+ +IL+ATDVAAR
Sbjct: 238 AMIFSRTKRTAQKLADELTERGFAAGAVHGDLGQGAREKALRAFRSGKVDILVATDVAAR 297
Query: 406 GLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
G+DV V V + E ++ +I R G++
Sbjct: 298 GIDVAGVTHVINLQCPDDEKNYVH-RIGRTGRA 329
>gi|422495471|ref|ZP_16571758.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
Length = 560
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 190/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 289
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + + + +HGD++Q RE+ L FR G
Sbjct: 290 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 349 EATILVATDVAARGIDVTGVSHV 371
>gi|422427756|ref|ZP_16504667.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|422530226|ref|ZP_16606190.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|422539124|ref|ZP_16614997.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|422571758|ref|ZP_16647339.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
Length = 560
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 190/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 289
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + + + +HGD++Q RE+ L FR G
Sbjct: 290 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 349 EATILVATDVAARGIDVTGVSHV 371
>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
Length = 525
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|422324246|ref|ZP_16405283.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
gi|353344302|gb|EHB88614.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
Length = 752
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 196/322 (60%), Gaps = 7/322 (2%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L + ++AAL G K PIQ+ + + G D++G A+TGTGKT AF +P
Sbjct: 79 GVRFTDLGLDPRVLAALEEVGYEKPSPIQEQTIPLLLDGHDVVGLAQTGTGKTAAFALPA 138
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQ 214
L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG+P Q
Sbjct: 139 LSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQ 198
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE ILE P
Sbjct: 199 LAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTP 258
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
++Q +FSATMP IR + +YL +P+ V + + A+ Y ++ ++
Sbjct: 259 DSKQVALFSATMPNSIRKIAQQYLNDPVEVRVKAKTTTS-ANISQRYMQVMHSHKLDAMT 317
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
L E+ G IVF +TK++ + +A + A+ + ++GDI Q RERT+ A RDGR
Sbjct: 318 RVLEVENYDG--IIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGR 375
Query: 394 FNILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLDV + LV
Sbjct: 376 IDILVATDVAARGLDVERISLV 397
>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
Length = 560
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 196/310 (63%), Gaps = 13/310 (4%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++ AL + G + PIQ A + M GRD++G+A+TGTGKT AF +P+L +I +
Sbjct: 26 LLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLLARI------NL 79
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVV 226
R+P LVLAPTRELA QV + F A P L + +YGG+ Q+ L GV VV
Sbjct: 80 EARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRRGVHVVV 139
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRV+D +++ LN+S+++ +VLDEAD+ML +GF +DV+ +LE+LP RQ ++FSATM
Sbjct: 140 GTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQLPSERQVVLFSATM 199
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
PP I+ ++ ++L+NP +++ + + A I I +K S + +++ H GG
Sbjct: 200 PPEIKRISQQHLQNP--AEVIIRTQKADASRIRQRHILLPHQQKLSALLRVLEAHGPGG- 256
Query: 347 CIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
I+F +TK +A A+ A+ C L+GD+ QS RERT+ + GR ++L+ATDVAAR
Sbjct: 257 VIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVLVATDVAAR 316
Query: 406 GLDVPNVDLV 415
GLDV + LV
Sbjct: 317 GLDVDRIGLV 326
>gi|375093701|ref|ZP_09739966.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374654434|gb|EHR49267.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 635
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 206/355 (58%), Gaps = 11/355 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + DIV AL+ GI + F IQ L A+ G D+IG+ARTG GKTL FG+P+L +
Sbjct: 116 FTELGVHPDIVRALSAAGIERTFAIQALTLPLALAGEDLIGQARTGMGKTLGFGVPVLQR 175
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRAL 218
+ + P LV+ PTREL QV + ++A L T +YGG P Q+ AL
Sbjct: 176 LTLPGDG-----TPQALVVVPTRELCLQVTHDLTDAAKHLGVRTTAIYGGRPYESQIEAL 230
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD V+GTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E IL +P+ RQ
Sbjct: 231 RKGVDLVIGTPGRLLDLAEQRHLVLGKVKALVLDEADEMLDLGFLPDIERILRMVPEQRQ 290
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L +L+ P + + + + + +KP ++ +++
Sbjct: 291 TMLFSATMPGPIITLARTFLRQPTHIRAEETDAGAIHERTRQFVYRSHSLDKPELVAKVL 350
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G ++FT+TKR A ++A +A + + +HGD+ Q RE+ L AFR G+ ++L
Sbjct: 351 QADGR-GLTMIFTRTKRTAQKVADDLAERGFAAAAVHGDLGQGAREQALRAFRSGKIDVL 409
Query: 398 IATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDADLL 450
+ATDVAARG+DV +V V E ++ + R GK+ V ++D D L
Sbjct: 410 VATDVAARGIDVDDVTHVINYQTPDDEKTYVHRIGRTGRAGKTGVAITLVDWDEL 464
>gi|342164201|ref|YP_004768840.1| cold-shock DEAD box protein A [Streptococcus pseudopneumoniae
IS7493]
gi|341934083|gb|AEL10980.1| cold-shock DEAD box protein A [Streptococcus pseudopneumoniae
IS7493]
Length = 524
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + ++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLVLEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
str. Jelinkova 176]
gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
str. Jelinkova 176]
Length = 538
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 203/319 (63%), Gaps = 16/319 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI + +E N + LV+APTRELA Q ++E + VYGG I Q+
Sbjct: 61 NKI-RTDE------NIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSII 334
RQ+++FSATMP I+ + K++KNP V + +++L + + Y + EK +
Sbjct: 174 ERQTLLFSATMPAPIKQIGVKFMKNPEHVQI---KNKELTNVNVEQYYVRVKEQEKFDTM 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D + + + + E +HGD+ Q++R R + F+ +
Sbjct: 231 TRLM-DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQ 289
Query: 394 FNILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ NV
Sbjct: 290 VDILVATDVAARGLDISNV 308
>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 524
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 194/326 (59%), Gaps = 33/326 (10%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L + ++I+ A+ G + IQ V+ ++G D+IG+A+TGTGKTLAFG P+L +
Sbjct: 6 FSELGLDENILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGAPVLSR 65
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
I + G+ ++L PTRELA QV E + A + + VYGG PI Q+ AL
Sbjct: 66 I-----RSSEGKIS-SIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISAL 119
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G+D VVGTPGRV+DLI+R LNL ++F+VLDEAD+ML++GF +D+E I++ Q+RQ
Sbjct: 120 RRGIDIVVGTPGRVLDLIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQ 179
Query: 279 SMMFSATMPPWIRSLTNKY----------LKNPLTVDLVGDSDQKLADGISLYSIATSM- 327
+M+FSATMP I+ L +Y LKN +TV V ++ + ++ +
Sbjct: 180 TMLFSATMPEEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRILD 239
Query: 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTL 386
++P+ I+F +TKR+ D L + + Y E +HGD++Q+QR TL
Sbjct: 240 VDEPT-------------SAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTL 286
Query: 387 SAFRDGRFNILIATDVAARGLDVPNV 412
F++G LIATDVAARG+DV NV
Sbjct: 287 RKFKEGSLEFLIATDVAARGIDVENV 312
>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae NEM316]
gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|406709269|ref|YP_006763995.1| ATP-dependent RNA helicase [Streptococcus agalactiae GD201008-001]
gi|424049656|ref|ZP_17787207.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae A909]
gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|389648929|gb|EIM70418.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|406650154|gb|AFS45555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae GD201008-001]
Length = 528
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K+P V + + + Y + EK + +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNV--NVDQYYVRVKENEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R + F++ +
Sbjct: 233 LM-DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHID 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
Length = 523
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 197/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEVDKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQHVETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPKHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|417935461|ref|ZP_12578778.1| DEAD/DEAH box helicase [Streptococcus infantis X]
gi|343402370|gb|EGV14875.1| DEAD/DEAH box helicase [Streptococcus infantis X]
Length = 524
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|379714822|ref|YP_005303159.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
316]
gi|386739884|ref|YP_006213064.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
31]
gi|387138142|ref|YP_005694121.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|387140160|ref|YP_005696138.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1/06-A]
gi|389849889|ref|YP_006352124.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
258]
gi|349734620|gb|AEQ06098.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|355391951|gb|AER68616.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
1/06-A]
gi|377653528|gb|AFB71877.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
316]
gi|384476578|gb|AFH90374.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
31]
gi|388247195|gb|AFK16186.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
258]
Length = 441
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 190/318 (59%), Gaps = 4/318 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IG+ARTG GKTL FG+P+LD+
Sbjct: 10 FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGQARTGMGKTLGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA+QV ++ +A + VYGG P Q++ L
Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQVL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q
Sbjct: 130 AAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP + +L ++ P+ + + I +K +I + +
Sbjct: 190 TLLFSATMPGPVLTLARTFMSRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARAL 249
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ GK I+FT+TKR A LA +A + + +HGD+ Q+ RE +L FR+GR +IL
Sbjct: 250 QAKER-GKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRVDIL 308
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+ +V V
Sbjct: 309 VATDVAARGLDIDDVTHV 326
>gi|440747418|ref|ZP_20926677.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
gi|436484338|gb|ELP40342.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
Length = 607
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 191/323 (59%), Gaps = 21/323 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L +S++I+ A+ G + PIQ + ++G+D+IG+A+TGTGKT AF IPI+D+
Sbjct: 7 FSDLGVSEEILRAVEDMGYTHPSPIQAQTIPMLLEGKDVIGQAQTGTGKTAAFAIPIIDQ 66
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRA 217
+ K P L+L PTRELA QVE E + L + C+YGG + Q+R
Sbjct: 67 VDVTLYK------PQALILCPTRELAVQVEGEIVKLSKFKKGLSSTCIYGGDSMDRQIRD 120
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGR++D + R L L V +VLDEAD+ML +GF ED+E IL P+ R
Sbjct: 121 LKKGVQVVVGTPGRIMDHMDRGTLKLDHVGIIVLDEADEMLDMGFREDIESILSDCPEER 180
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIGQ 336
Q++ FSATMP I LT KY +P V + L +++ +I+ YE KPS+ +
Sbjct: 181 QTVFFSATMPKPILDLTKKYQNDPEIVKV-------LKKELTVENISQVYYEVKPSLKLE 233
Query: 337 LITEHAKGGK---CIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDG 392
L++ + +VF TKR D + MA+ E LHGD+SQ+QR + + FR G
Sbjct: 234 LMSRLMNLNQFNLSVVFCNTKRITDEVTEELMARGIQAEALHGDLSQAQRSKVMGKFRKG 293
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
++L+ATDVAARG+DV +V+ V
Sbjct: 294 HVSVLVATDVAARGIDVNDVEAV 316
>gi|22536941|ref|NP_687792.1| DEAD/DEAH box helicase [Streptococcus agalactiae 2603V/R]
gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 2603V/R]
Length = 528
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K+P V + + + Y + EK + +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNV--NVDQYYVRVKENEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R + F++ +
Sbjct: 233 LM-DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHID 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 197/318 (61%), Gaps = 12/318 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ISQD++ ++++ G + PIQ + A++G D+IG+A+TGTGKT AFGIP+++
Sbjct: 4 FNELGISQDLMKSISKMGFEEATPIQSQTIPLALEGHDVIGQAQTGTGKTAAFGIPLIEN 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ +E N +V+APTRELA QV +E H+ + + +YGG IS Q+R+L
Sbjct: 64 VDVKDE------NIQGIVIAPTRELAIQVSEELHKIGHFNRVRILPIYGGQDISRQIRSL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+VGTPGRVID I R L L V+ VVLDEAD+ML++GF ED+E IL+ +P RQ
Sbjct: 118 KKHPHIIVGTPGRVIDHINRKTLKLQNVKTVVLDEADEMLNMGFIEDIEAILKGVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMP I+ + +++KNP V + + + I Y + +K ++ +L+
Sbjct: 178 TLLFSATMPGPIQRIAERFMKNPKVVKV--KTKEMTVPNIQQYYLEVQEKKKFDVLTRLL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ I+F +TKR D L+ A+ + Y E +HGD+SQ++R L F++G +L
Sbjct: 236 DIQSP-ELAIIFGRTKRRVDELSEALTLRGYAAEGIHGDLSQAKRISVLRKFKEGSIEVL 294
Query: 398 IATDVAARGLDVPNVDLV 415
+ATDVAARGLD+ V V
Sbjct: 295 VATDVAARGLDISGVTHV 312
>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
Length = 623
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 190/318 (59%), Gaps = 16/318 (5%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-PSIIGQLI 338
+FSATMP I+ + NK+LKN + + + D I + S + K +++ L
Sbjct: 183 ALFSATMPEQIKRVANKHLKNATNISIA--ASHTTVDSIEQRFVQVSQHNKLEALVRVLE 240
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
E+ +G I+F +T+ LA + A+ Y PLHGD++Q RER + ++G+ +IL
Sbjct: 241 VENTEG--IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDIL 298
Query: 398 IATDVAARGLDVPNVDLV 415
IATDVAARGLDV + V
Sbjct: 299 IATDVAARGLDVERIGHV 316
>gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 595
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 196/324 (60%), Gaps = 24/324 (7%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+L +S++++ A+ G + PIQ + + G D G+A+TGTGKT AFG+PILDK
Sbjct: 5 FEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPILDK 64
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRA 217
+ RN L+L PTRELA QV +E ++ A + + +YGG PI Q+RA
Sbjct: 65 LTP-------ERNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRA 117
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRV+D +KR L LS+ VLDEAD+ML +GF ED+E ILE+ P +
Sbjct: 118 LAKGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASC 177
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPS 332
Q ++FSAT+PP IR L+ ++L+ P + + QK+ +++ +I YE K
Sbjct: 178 QRVLFSATVPPAIRELSKRFLREPEMLTVA----QKM---LTVPAIEQIYYEVRPHQKMD 230
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+ +L+ A K +VF TKR AD + H + Y + LHG+++QSQR+R + FR
Sbjct: 231 ALCRLLDSRAF-HKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRA 289
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
++L+ATDVAARGLDV +VD V
Sbjct: 290 EGLDVLVATDVAARGLDVDDVDAV 313
>gi|432331921|ref|YP_007250064.1| DNA/RNA helicase, superfamily II [Methanoregula formicicum SMSP]
gi|432138630|gb|AGB03557.1| DNA/RNA helicase, superfamily II [Methanoregula formicicum SMSP]
Length = 533
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 204/344 (59%), Gaps = 14/344 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S L + +++ A+ G + PIQ + GRD+ +A+TGTGKT AFGIPI+
Sbjct: 5 IQFSDLHLGKELGKAIEDMGFEEPSPIQALAIPLIQAGRDVTAQAQTGTGKTAAFGIPII 64
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+I R+ +VL PTRELA Q+ +EF P + + VYGG PI Q+
Sbjct: 65 GRIDPSR------RSVQAIVLCPTRELAIQIAEEFSNLLAHMPRISVLPVYGGQPIERQL 118
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL GV V+GTPGRV+D + R L L +V+ VVLDEADQML +GF +D+E+IL ++PQ
Sbjct: 119 RALQAGVHIVIGTPGRVMDHLDRRTLRLEDVETVVLDEADQMLDMGFRDDIELILRKVPQ 178
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I ++ ++ P V + + + I I EK ++
Sbjct: 179 KRQTLLFSATMPKPILEISRQFQNKPEFVRV--EYAELTVPQIEQSYIEVREREKLDVLC 236
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+LI + A I+F TKR A+ L+ + A+ Y + LHGD+ QSQR+R + FR G
Sbjct: 237 RLI-DLADPNLAIIFCNTKRRAEELSTKVRARGYRADELHGDMKQSQRDRVMGGFRKGII 295
Query: 395 NILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+ILIATDVAARG+DV +VD+V + ++V++ +I R G++
Sbjct: 296 DILIATDVAARGIDVDDVDMVINYDIP-QDVEYYVHRIGRTGRA 338
>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
Length = 503
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 197/321 (61%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ ++ R G + PIQ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI +E G LV+APTRELA Q ++E + + VYGG I Q+
Sbjct: 61 EKIDPDRHELQG-------LVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L VVGTPGR++D I R+ L L VQ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 RGLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIIFQVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+++ K++K+P V + + + AD I Y + YEK I+
Sbjct: 174 QRQTLLFSATMPPAIKNIGVKFMKSPHHVKI--KAKEMTADLIDQYYVRAKEYEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L IVF +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G
Sbjct: 232 RLFDVQTP-ELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHL 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 DILVATDVAARGLDISGVTHV 311
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 192/319 (60%), Gaps = 20/319 (6%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S+ I+ A+ G + PIQ + + G D+IG+A+TGTGKT AFGIPIL+K+
Sbjct: 10 LQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPILEKL-- 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYG 221
+ R R LV+ PTRELA QV +E + D T+ VYGG I Q+ AL G
Sbjct: 68 ----NPRYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGALKRG 123
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V VVGTPGR++D I R L L ++ +VLDEAD+ML +GF +D+E I++ P+ RQ+++
Sbjct: 124 VQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPETRQTLL 183
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE--KPSIIGQL-- 337
FSATMP I+ L KYLKNP V + D +++ SI YE + + + L
Sbjct: 184 FSATMPHEIQQLARKYLKNPRLVAVSKDE-------LTVPSIEQVYYEVREKTKLESLCR 236
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E I+F +TKR D L ++ + Y E LHGD++Q+QR + + F++G+ +
Sbjct: 237 VLETIDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDY 296
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLD+ NV V
Sbjct: 297 LVATDVAARGLDIENVSHV 315
>gi|406663218|ref|ZP_11071284.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
gi|405552735|gb|EKB48086.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
Length = 570
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 204/347 (58%), Gaps = 24/347 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L IS +I+ A+ G + IQ + ++G+D+IG+A+TGTGKT +F IPI+D
Sbjct: 7 FSDLGISAEILKAVEDMGYTHPSTIQAQSIPFLLEGKDVIGQAQTGTGKTASFAIPIIDM 66
Query: 161 I-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMR 216
+ FN+ P L+L PTRELA QVE E + + + C+YGG I Q++
Sbjct: 67 VDASFNK-------PQALILCPTRELAVQVEGEIVKLSKYKRGISSTCIYGGEAIDRQIK 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+L GV VVGTPGR++D + R LNL V+ +VLDEAD+ML +GF +D+E IL P+
Sbjct: 120 SLKKGVQIVVGTPGRIMDHMDRGTLNLEHVRIIVLDEADEMLDMGFRDDIENILSDCPEE 179
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSIIG 335
RQ++ FSATMP I LT KY NP V + L +++ +I+ YE KPS+
Sbjct: 180 RQTVFFSATMPKPIMDLTRKYQDNPEIVKV-------LRKELTVENISQVYYEVKPSLKL 232
Query: 336 QLITEHAKGGK---CIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRD 391
+L++ + +VF TKR D + + A+ E LHGD+SQ+QR + ++ FR
Sbjct: 233 ELMSRLINLNQFQLSVVFCNTKRVTDEVTEELIARGITAEALHGDLSQAQRTKVMNKFRK 292
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
G ++L+ATDVAARG+DV NV+ V L E ++ +I R G++
Sbjct: 293 GHVSVLVATDVAARGIDVDNVEAVFNFDLPLDEENYVH-RIGRTGRA 338
>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
Length = 521
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +KL++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNKLNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIGTLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|430749671|ref|YP_007212579.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430733636|gb|AGA57581.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 517
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 188/315 (59%), Gaps = 12/315 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ + ++ A+ G + PIQ + AM G D+IG+A+TGTGKT AFGIP++ K
Sbjct: 4 FAEFGLEPKVLQAVTEMGFEESTPIQAKAIPIAMSGADLIGQAQTGTGKTAAFGIPLISK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I E+ + LV+ PTRELA QV E + A + T+ +YGG I Q+RAL
Sbjct: 64 IPPEEERI------VALVMTPTRELAIQVADELGKLARYKGIRTLPIYGGQDIGRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +VQ VVLDEAD+ML +GF ED+ IL +P+ RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDITTILSLVPEERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMPP I+ L ++L+NP V ++ A I I EK + +L+
Sbjct: 178 TMLFSATMPPNIQKLAQQFLRNPEHVSVI--PKNITAPSIEQIYIEVHEREKFEALSRLL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ IVF +TKR D L+ A+ K Y+ + LHGD+SQ+QR+ + FRDG ++L
Sbjct: 236 DMESP-DLAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDTVMRKFRDGSIDVL 294
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARGLDV V
Sbjct: 295 VATDVAARGLDVSGV 309
>gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 609
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 206/357 (57%), Gaps = 11/357 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E ++L + ++IV AL GI + F IQ+ L A+ G D+IG+ARTGTGKTL FGIP
Sbjct: 50 EAPTFTELGVREEIVRALGEAGIERAFAIQELTLPLALAGEDVIGQARTGTGKTLGFGIP 109
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L ++I + P LV+ PTREL QV + +++ +D + +YGG P Q
Sbjct: 110 LLQRVITPGDG-----TPQALVVVPTRELCLQVTHDLTDASKHMDVRVLAIYGGRPYEPQ 164
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GVD VVGTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E +L +P
Sbjct: 165 IAALRKGVDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVP 224
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I +L +L P V + + + + +K ++
Sbjct: 225 DERQTMLFSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHALDKVELL 284
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+++ + G ++FT+TKR A ++A MA + + +HGD+ Q RE+ L AFR G+
Sbjct: 285 ARVLQARDR-GLSMIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGK 343
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDAD 448
++L+ATDVAARG+DV V V E ++ + R G++ V ++D D
Sbjct: 344 IDVLVATDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWD 400
>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
Length = 528
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 199/346 (57%), Gaps = 14/346 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L IS +I A+A G PIQ+ + + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 EKIKFEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISH 213
LD I N K + +VL PTRELA Q +E H+ + + VYGG PI
Sbjct: 62 ALD-TIDLNNKSLQ-----IMVLCPTRELAIQATQEVHKLGKYKKDISVLAVYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV ++GTPGRVID I+R L ++ +VLDEAD+ML +GF +D+E I++ +
Sbjct: 116 QIKALKRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQEI 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
PQNRQ+++FSATM I L+ KY N + +V Q I + K +
Sbjct: 176 PQNRQTILFSATMAKAIIELSKKYQNNAEFIKVV--HKQLTVPNIEQRYLEVKENNKLEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +LI + ++F TK+ D + + A+ Y E LHGD+ Q QR+R ++ FR+G
Sbjct: 234 LSRLI-DMRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
IL+ATDVAARG+DV +V+ V L + E ++ +I R G++
Sbjct: 293 TIEILVATDVAARGIDVDDVEAVFNYDLPQDE-EYYVHRIGRTGRA 337
>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|339301744|ref|ZP_08650830.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|417005047|ref|ZP_11943640.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|421146787|ref|ZP_15606490.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|341576860|gb|EGS27268.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|401686494|gb|EJS82471.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
Length = 528
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K+P V + + + Y + EK + +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNV--NVDQYYVRVKENEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R + F++ +
Sbjct: 233 LM-DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHID 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
Length = 533
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 196/318 (61%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L ++ +++ ++ R G + PIQ + A++G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 6 LKFTELGLAPELLKSVERLGFEEATPIQAQTIPLALEGKDVIGQAQTGTGKTAAFGLPML 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
KI N RN LV+APTRELA Q ++E + + VYGG IS Q+R
Sbjct: 66 QKIDVNN------RNVQGLVIAPTRELAIQTQEELFRLSRDKKIRVQVVYGGADISRQIR 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL VVGTPGR++D IKR L L V+ +VLDEAD+ML++GF +D+E I+ +P
Sbjct: 120 ALKDAPHIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAE 179
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG-ISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+ + +++ NP V + + ++D I + + +EK I+
Sbjct: 180 RQTLLFSATMPPAIKRIGVRFMSNPEHVQIKATT---MSDSLIEQFFVRCKDFEKFDIMT 236
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L I+F +TKR D LA + A+ Y E +HGD+SQ +R L +F+ G+
Sbjct: 237 RLFDVQTP-ELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKL 295
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 296 DILVATDVAARGLDISGV 313
>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
1_2_62CV]
gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
1_2_62CV]
Length = 565
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 197/320 (61%), Gaps = 16/320 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L+K
Sbjct: 50 FNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 109
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
I NP+ LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 110 I--------NTENPIVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 161
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 162 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEE 221
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K P V + + + + + Y I EK + +
Sbjct: 222 RQTLLFSATMPDAIKRIGMKFMKEPTHVKIA--AKELTTELVDQYYIRVKENEKFDTMTR 279
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q +R R L F++G +
Sbjct: 280 LM-DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLD 338
Query: 396 ILIATDVAARGLDVPNVDLV 415
+L+ATDVAARGLD+ V V
Sbjct: 339 VLVATDVAARGLDISGVTHV 358
>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 527
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 204/340 (60%), Gaps = 14/340 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
++++ I+ A+ G ++ PIQ + ++G+D++G+A+TGTGKT AF IPIL KI
Sbjct: 7 EMELQTPIIRAIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIPILQKI- 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
+ + ++L PTRELA QV E H+ + + I +YGG I+ Q+R+L
Sbjct: 66 -----DPKVKGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLK 120
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV V+GTPGRV+D ++R + +V + LDEAD+ML++GF ED+E IL+ +P++RQ+
Sbjct: 121 AGVQIVIGTPGRVMDHMRRKTVKFDKVSMIALDEADEMLNMGFREDIETILKEMPEDRQT 180
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP I + Y K+ V +V + I Y K ++ +L+
Sbjct: 181 LLFSATMPQPIMDIARTYQKDATIVKVV--KKELTVPKIEQYYYEVRPKNKVDVLSRLLD 238
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
++ +C+VF TKR D L A++ + + E LHGD+ Q QR+R +S+FR G+ IL+
Sbjct: 239 MYSP-KRCLVFCNTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILV 297
Query: 399 ATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
ATDVAARG+DV +V+ V + + E ++ +I R G++
Sbjct: 298 ATDVAARGIDVDDVEAVFNYDVPQDE-EYYVHRIGRTGRA 336
>gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 580
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 198/328 (60%), Gaps = 14/328 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ I+A L + GI PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 24 NFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 83
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ +E+ R L+LAPTREL Q+ + + SL V GG I+ Q
Sbjct: 84 KLLA-DERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQ 142
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DLI R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 143 LEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 202
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY-SIATSMYEKPSIIGQ 336
Q+M+FSATMP I L +YL +P+ V++ K AD + Y +K ++ +
Sbjct: 203 QTMLFSATMPKAIADLAGEYLVDPVKVEVT--PPGKAADKVEQYVHFVAGKNDKTELLRK 260
Query: 337 LITEHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
+TE+ G+ +VF +TK A++L H Y+ +HG+ SQ QRER L AFRDG
Sbjct: 261 SLTENPD-GRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIK 319
Query: 396 ILIATDVAARGLDVP------NVDLVEL 417
LIATDVAARG+D+P N DL E+
Sbjct: 320 TLIATDVAARGIDIPAVSHVYNYDLPEV 347
>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852122|ref|ZP_11909267.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739611|gb|EHI64843.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
Length = 538
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 202/318 (63%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI + +E + LV+APTRELA Q ++E + VYGG I Q++
Sbjct: 61 NKI-RTDENIIQ-----ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++KNP V + +++L + + Y + EK +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKNPEHVQI---KNKELTNVNVEQYYVRVKEQEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D + + + + E +HGD+ Q++R R + F+ +
Sbjct: 232 RLM-DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQV 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ NV
Sbjct: 291 DILVATDVAARGLDISNV 308
>gi|417846630|ref|ZP_12492623.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1073]
gi|339458263|gb|EGP70806.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1073]
Length = 524
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|421488009|ref|ZP_15935407.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
gi|400369971|gb|EJP22968.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
Length = 525
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSTELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
Length = 552
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 190/323 (58%), Gaps = 13/323 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++ I+ A+ G PIQ + ++G D+IG+A+TGTGKT AFGIP
Sbjct: 2 EAIKFEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISH 213
+L K+ + + ++L PTRELA QV +E A + + V YGG I
Sbjct: 62 LLQKV------DPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G+ ++GTPGRV+D ++R L L V VVLDEAD+ML++GF ED+E IL L
Sbjct: 116 QIRSLKDGIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSEL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMPP I + K+ K+P V +V + ++ Y K +
Sbjct: 176 PEERQTVMFSATMPPAIAEIAKKFQKDPEIVKVV--KKELTVPKVTQYYYEVKPKTKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ + IVF TKR D L + + Y E LHGD+ Q QR+R +++FR+G
Sbjct: 234 MCRLLDMYDP-KLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
R +ILIATDVAARG+DV +V+ V
Sbjct: 293 RTDILIATDVAARGIDVDDVEAV 315
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 195/320 (60%), Gaps = 13/320 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +++++S+ ++ A+ G + PIQ + A++G+D+ G+A+TGTGKT AFG+P+L
Sbjct: 1 MKFNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMALEGKDVFGQAQTGTGKTAAFGLPLL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+K+ H G L++ PTRELA Q +E + + T VYGG I HQ++
Sbjct: 61 EKV------HETG-GVQALIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIK 113
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L V+GTPGR++DLIKR L L+ V+ +VLDEAD+ML +GF ED+E I+ LP
Sbjct: 114 LLKKNPPVVIGTPGRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRELPTE 173
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSAT+P I+ + + ++ +P TV + + Q AD I Y YEK ++ +
Sbjct: 174 RQTLLFSATVPQEIKRIADNFMNDPATVHV--KTKQMTADLIDQYYSRCKDYEKFDLLTR 231
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
I + IVF +TKR D +A + + Y+ E +HGD+SQ +R L F++G+ +
Sbjct: 232 FI-DVQNPELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLD 290
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 291 ILVATDVAARGLDISGVTHV 310
>gi|419482639|ref|ZP_14022426.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40563]
gi|379579231|gb|EHZ44138.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40563]
Length = 517
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 195/310 (62%), Gaps = 12/310 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L+KI
Sbjct: 1 MSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKI---- 56
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
LV+APTRELA Q ++E S + VYGG+ I Q++AL G
Sbjct: 57 --RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAH 114
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+NRQ+++FS
Sbjct: 115 IVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFS 174
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP I+ + +++K P V + + + + + Y I EK + +L+ + A+
Sbjct: 175 ATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTRLM-DVAQ 231
Query: 344 GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
IVF +TKR D L + + + E +HGD+ Q++R R L F++G ++L+ATDV
Sbjct: 232 PELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDV 291
Query: 403 AARGLDVPNV 412
AARGLD+ V
Sbjct: 292 AARGLDISGV 301
>gi|419782961|ref|ZP_14308757.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
gi|383182695|gb|EIC75245.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
Length = 520
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 694
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 196/326 (60%), Gaps = 11/326 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+ + + L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +
Sbjct: 47 ENAVKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAV 106
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPIS 212
P L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+
Sbjct: 107 PALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYG 166
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFAEDVE I ++
Sbjct: 167 PQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQ 226
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
P++RQ +FSATMP IR ++ +YL +P + + K + G ++ + P
Sbjct: 227 TPEDRQVALFSATMPGQIRRMSKQYLNDPAEISV----KTKTSTGTNIRQRYLQIM-GPQ 281
Query: 333 IIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAF 389
+ + I E + I F +TK + LA + ++ + ++GDI Q QRERT+ A
Sbjct: 282 KLDAMTRILEVEEFDGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDAL 341
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
++GR +IL+ATDVAARGLDV + V
Sbjct: 342 KEGRIDILVATDVAARGLDVERISHV 367
>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|355627088|ref|ZP_09049059.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|354820528|gb|EHF04943.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
Length = 552
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 190/323 (58%), Gaps = 13/323 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++ I+ A+ G PIQ + ++G D+IG+A+TGTGKT AFGIP
Sbjct: 2 EAIKFEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISH 213
+L K+ + + ++L PTRELA QV +E A + + V YGG I
Sbjct: 62 LLQKV------DPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G+ ++GTPGRV+D ++R L L V VVLDEAD+ML++GF ED+E IL L
Sbjct: 116 QIRSLKDGIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSEL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMPP I + K+ K+P V +V + ++ Y K +
Sbjct: 176 PEERQTVMFSATMPPAIAEIAKKFQKDPEIVKVV--KKELTVPKVTQYYYEVKPKTKVEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ + IVF TKR D L + + Y E LHGD+ Q QR+R +++FR+G
Sbjct: 234 MCRLLDMYDP-KLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
R +ILIATDVAARG+DV +V+ V
Sbjct: 293 RTDILIATDVAARGIDVDDVEAV 315
>gi|386845669|ref|YP_006263682.1| Pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Actinoplanes
sp. SE50/110]
gi|359833173|gb|AEV81614.1| Pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Actinoplanes
sp. SE50/110]
Length = 648
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 6/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + + V ALA+ GI+ F IQ+ L A++G D+IG+A TGTGKTL FG+P+L++
Sbjct: 24 FADLGVRPETVEALAKAGITHAFAIQEYALPIALRGTDLIGQAPTGTGKTLGFGLPLLER 83
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRAL 218
++ +E G P L++ PTREL QV ++ + + + + +YGG Q+ L
Sbjct: 84 VLAPSE--GADGRPQALIVVPTRELGLQVARDLAAAGSTRGVRVLPIYGGVAYEPQVEQL 141
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV+ +VGTPGR++DL K+ L L+ V +VLDEAD+ML +GF +DVE IL LP+ RQ
Sbjct: 142 KKGVEILVGTPGRLLDLAKQKQLKLNAVAALVLDEADRMLDLGFLDDVEKILAMLPEQRQ 201
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L+ ++L+NP+T+ +D T K ++ +++
Sbjct: 202 TMLFSATMPDPIVALSRRFLRNPMTIHAGHTTDSGPNPLTKQVVYRTHPLNKIEMVSRIL 261
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G ++FT+TKR AD+++ + + + +HGD+ Q RER L AFR G+ ++L
Sbjct: 262 QARDR-GLTMIFTRTKRAADKVSEELDFRGFAVAAVHGDLGQGARERALRAFRSGKIDVL 320
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARGLDV V
Sbjct: 321 VATDVAARGLDVSGV 335
>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
Length = 524
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|419778066|ref|ZP_14303968.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
gi|383187819|gb|EIC80263.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
Length = 525
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|325068259|ref|ZP_08126932.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
Length = 507
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 206/337 (61%), Gaps = 26/337 (7%)
Query: 96 DEGL--DISK-----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
DEG+ D+S+ + +I AL +GI+ FPIQ L A++G+D+IG+A+TGTG
Sbjct: 60 DEGVQTDLSRKTFADFGVEPEICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTG 119
Query: 149 KTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLD 201
KTL FGIP+L + ++E G +P LV+ PTRELAKQV +E +A ++
Sbjct: 120 KTLGFGIPLLMDTLGPGEEGWDEDPASG-SPQALVILPTRELAKQVAEELSTAAAKRTVR 178
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ VYGG Q+ L+ G + VVGTPGR+IDL++R L+L+ V VVLDEAD+ML +G
Sbjct: 179 IVQVYGGRAYEPQIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLG 238
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F DVE IL R +R +M+FSATMP + +L +Y+ P + D+ G+++
Sbjct: 239 FLPDVEKILARTRADRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDE----GMTVQ 294
Query: 322 SIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHG 375
++ +Y K ++ +++ + G+ I+F +TKR A R+A + A+ + LHG
Sbjct: 295 TVQQVVYRTHSMNKVEVVSRILQAEGR-GRTIIFARTKRTAARVADDLRARGFATGALHG 353
Query: 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
D+ Q RE+ L AFR+ + ++L+ATDVAARG+DV +V
Sbjct: 354 DLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDV 390
>gi|401684066|ref|ZP_10815949.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
gi|400186371|gb|EJO20583.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
Length = 520
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEESTIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|310644435|ref|YP_003949194.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 525
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 193/320 (60%), Gaps = 12/320 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GIS P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 3 NFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + PSL + VYGG + Q+R
Sbjct: 63 KL-NLDKRH-----PQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLR 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+L ++ +VLDEADQML +GF DVE IL+ +P
Sbjct: 117 KLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYR 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMP IR L Y+ P+ V + S ++ + T ++ +++
Sbjct: 177 RQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDM 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L T+ ++F +TKR A +L + + + LHGD+SQ++RE+ + AFR+ +
Sbjct: 237 LNTDRPY--LAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQ 294
Query: 396 ILIATDVAARGLDVPNVDLV 415
+L+ATDVAARGLDV V V
Sbjct: 295 LLVATDVAARGLDVEGVTHV 314
>gi|407686365|ref|YP_006801538.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289745|gb|AFT94057.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 596
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/316 (43%), Positives = 190/316 (60%), Gaps = 13/316 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I+ +T +YLK+P V + S A I + + K + +++
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIA--SKVSTASTIRQRYCQIAPHHKLEALTRIMEV 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G I+F +TK LA + A+ Y+ EPL+GDI Q+ RERT+ + G+ +IL+A
Sbjct: 244 EVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVA 302
Query: 400 TDVAARGLDVPNVDLV 415
TDV ARGLDV V V
Sbjct: 303 TDVVARGLDVERVSHV 318
>gi|406588887|ref|ZP_11063373.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|419814746|ref|ZP_14339501.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
gi|419817514|ref|ZP_14341672.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404465849|gb|EKA11235.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404466056|gb|EKA11416.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|404471161|gb|EKA15716.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
Length = 525
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|418171721|ref|ZP_12808345.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19451]
gi|419451027|ref|ZP_13991013.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
gi|353835458|gb|EHE15552.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19451]
gi|379622732|gb|EHZ87366.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
Length = 517
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 195/310 (62%), Gaps = 12/310 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L+KI
Sbjct: 1 MSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKI---- 56
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
LV+APTRELA Q ++E S + VYGG+ I Q++AL G
Sbjct: 57 --RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAH 114
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+NRQ+++FS
Sbjct: 115 IVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFS 174
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP I+ + +++K P V + + + + + Y I EK + +L+ + A+
Sbjct: 175 ATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTRLM-DVAQ 231
Query: 344 GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
IVF +TKR D L + + + E +HGD+ Q++R R L F++G ++L+ATDV
Sbjct: 232 PELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDV 291
Query: 403 AARGLDVPNV 412
AARGLD+ V
Sbjct: 292 AARGLDISGV 301
>gi|335030730|ref|ZP_08524212.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus anginosus
SK52 = DSM 20563]
gi|333771191|gb|EGL48148.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus anginosus
SK52 = DSM 20563]
Length = 565
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 197/320 (61%), Gaps = 16/320 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L+K
Sbjct: 50 FNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 109
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
I NP+ LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 110 I--------NTENPIVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 161
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 162 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEE 221
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K P V + + + + + Y I EK + +
Sbjct: 222 RQTLLFSATMPDAIKRIGVKFMKEPTHVKIA--AKELTTELVDQYYIRVKENEKFDTMTR 279
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q +R R L F++G +
Sbjct: 280 LM-DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLD 338
Query: 396 ILIATDVAARGLDVPNVDLV 415
+L+ATDVAARGLD+ V V
Sbjct: 339 VLVATDVAARGLDISGVTHV 358
>gi|333894503|ref|YP_004468378.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
Length = 588
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/321 (43%), Positives = 189/321 (58%), Gaps = 23/321 (7%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P RQ+
Sbjct: 126 GVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPAERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL--- 337
+FSATMP I+ +T +YLK+P V K+A +S S Y + + +L
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHV--------KIASKVSTASTIRQRYCQVAPHHKLEAL 237
Query: 338 --ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E + I+F +TK LA + A+ Y+ EPL+GDI Q+ RERT+ + G
Sbjct: 238 TRIMEVERFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNI 297
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDV ARGLDV V V
Sbjct: 298 DILVATDVVARGLDVERVSHV 318
>gi|418963292|ref|ZP_13515131.1| DEAD/DEAH box helicase [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|383343407|gb|EID21591.1| DEAD/DEAH box helicase [Streptococcus anginosus subsp. whileyi CCUG
39159]
Length = 565
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 197/320 (61%), Gaps = 16/320 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L+K
Sbjct: 50 FNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 109
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
I NP+ LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 110 I--------NTENPVVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 161
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 162 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEE 221
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K P V + + + + + Y I EK + +
Sbjct: 222 RQTLLFSATMPDAIKQIGVKFMKEPTHVKIA--AKELTTELVDQYYIRVKENEKFDTMTR 279
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q +R R L F++G +
Sbjct: 280 LM-DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLD 338
Query: 396 ILIATDVAARGLDVPNVDLV 415
+L+ATDVAARGLD+ V V
Sbjct: 339 VLVATDVAARGLDISGVTHV 358
>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 647
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 195/317 (61%), Gaps = 13/317 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L+++ +++AL + G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLELADTLLSALDKMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 67 KLKLSQHK------PQAIVMAPTRELAIQVAAEVKTLGQNIQGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 121 ALKNGAHIVVGTPGRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+NP +D+ G+ ++ +A + + + + +++
Sbjct: 181 AQRVLFSATMPPIVKEIVDRFLRNPARIDVAGE-NRTVAKVDQQFWVVKGVEKDEAMMRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G +
Sbjct: 240 LETEDTDA--SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVID 297
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDV ARGLDVP +
Sbjct: 298 ILVATDVVARGLDVPRI 314
>gi|419766821|ref|ZP_14292997.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
gi|383353731|gb|EID31335.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
Length = 524
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|379058234|ref|ZP_09848760.1| DNA/RNA helicase [Serinicoccus profundi MCCC 1A05965]
Length = 508
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 200/347 (57%), Gaps = 11/347 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + DIV ALA GI+ FPIQ L A+ D+IG+A+TGTGKTL FG+P+L
Sbjct: 7 FADFGLHPDIVRALADGGITHPFPIQAMTLPVALGRHDIIGQAKTGTGKTLGFGLPLLHN 66
Query: 161 IIKFNEKH----GRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ 214
++ ++ G+ P LV+APTRELA QV + ++A S VYGG Q
Sbjct: 67 VVGPQDEGFADLGKPGAPQALVVAPTRELAVQVAGDLSKAAAHRSARIFTVYGGRAYEPQ 126
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL+ GV+ VVGTPGR++DL + L+L + VVLDEAD+ML +GF DVE +L P
Sbjct: 127 IEALNRGVEIVVGTPGRLLDLASKGHLDLGHARTVVLDEADEMLDLGFLPDVEKMLALTP 186
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD--QKLADGISLYSIATSMYEKPS 332
RQ+M+FSATMP + SL Y+ P + V D D ++ + ++ +K
Sbjct: 187 AGRQTMLFSATMPGAVVSLARSYMTQPTHIRAVSDDDDGRQTVAAVEQFAYRAHAMDKIE 246
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++ +++ + G I+F +TKR A ++A +A + + +HGD+ Q RE+ L AFR
Sbjct: 247 MVARILQAEGR-GLTIIFARTKRTAAKVADELADRGFASAAIHGDLGQGAREQALRAFRS 305
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
G+ ++L+ATDVAARG+DV V V E +L +I R G++
Sbjct: 306 GKVDVLVATDVAARGIDVEAVTHVINYQCPEDEKTYLH-RIGRTGRA 351
>gi|422486274|ref|ZP_16562630.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|327443709|gb|EGE90363.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
Length = 560
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 190/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 289
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + + + +HGD++Q RE+ L FR G
Sbjct: 290 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDDRGFKPRAIHGDLTQVAREKALKKFRHG 348
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 349 EATILVATDVAARGIDVTGVSHV 371
>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
700779]
gi|419842756|ref|ZP_14366093.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|421277111|ref|ZP_15727931.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
700779]
gi|385703701|gb|EIG40814.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|395876392|gb|EJG87468.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
Length = 524
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|406595506|ref|YP_006746636.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407682465|ref|YP_006797639.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|406372827|gb|AFS36082.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407244076|gb|AFT73262.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 596
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/316 (43%), Positives = 190/316 (60%), Gaps = 13/316 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEERKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I+ +T +YLK+P V + S A I + + K + +++
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIA--SKVSTASTIRQRYCQIAPHHKLEALTRIMEV 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G I+F +TK LA + A+ Y+ EPL+GDI Q+ RERT+ + G+ +IL+A
Sbjct: 244 EVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVA 302
Query: 400 TDVAARGLDVPNVDLV 415
TDV ARGLDV V V
Sbjct: 303 TDVVARGLDVERVSHV 318
>gi|340795113|ref|YP_004760576.1| hypothetical protein CVAR_2153 [Corynebacterium variabile DSM
44702]
gi|340535023|gb|AEK37503.1| hypothetical protein CVAR_2153 [Corynebacterium variabile DSM
44702]
Length = 456
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 210/368 (57%), Gaps = 24/368 (6%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L ++ +IV AL +GI + F IQ+ L A+ G+D+IG+ARTG GKTL FG+P+LD++
Sbjct: 11 LGVAAEIVDALTDQGIDRAFAIQERTLPLALTGKDLIGQARTGMGKTLGFGVPMLDRLFD 70
Query: 164 ---FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--------------TICVY 206
E G R LV+ PTREL QV ++ ++ L +Y
Sbjct: 71 DADITELDGTVRG---LVVVPTRELCLQVAEDLTGASTRLTAPVGPGKDATRPFRVTAIY 127
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GG P Q ALD G D VVGTPGR++DL ++N L+L+ V+ +VLDEAD+ML GF +DV
Sbjct: 128 GGVPFEKQTAALDAGTDVVVGTPGRLLDLSRQNLLDLTHVEVLVLDEADEMLDQGFLDDV 187
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
+ I+ + NRQ+M+FSATMP I +LT ++ P+ V S Q + +
Sbjct: 188 KAIMAQTSPNRQTMLFSATMPGPIVALTRSFMHRPVRVRADNSSAQATHATTTQIVFQSH 247
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERT 385
++ S++ +++ + G+ IVF +TKR A +A +A + +HGD+ Q+ RER+
Sbjct: 248 RLDRVSVLARILQTPGR-GRTIVFARTKRSAAMVAEDLAGLGFRVGAVHGDMRQNDRERS 306
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLST--QISRPGKSRVLSE 443
L AFRDG +I++ATDVAARG+DV +V V + + ++ + R G S V
Sbjct: 307 LDAFRDGSVDIMVATDVAARGIDVEDVTHVINYQVPEDDKTYVHRIGRTGRAGHSGVAVT 366
Query: 444 MLDADLLS 451
++D D L+
Sbjct: 367 LVDWDDLT 374
>gi|365827882|ref|ZP_09369720.1| hypothetical protein HMPREF0975_01503, partial [Actinomyces sp.
oral taxon 849 str. F0330]
gi|365264596|gb|EHM94396.1| hypothetical protein HMPREF0975_01503, partial [Actinomyces sp.
oral taxon 849 str. F0330]
Length = 540
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 200/328 (60%), Gaps = 19/328 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + +I AL+ +GI+ FPIQ L A++G+D+IG+A+TGTGKTL FGIP+L
Sbjct: 70 FADFGVEPEICDALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMD 129
Query: 161 IIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
+ ++E G +P LV+ PTRELAKQV +E +A ++ + VYGG
Sbjct: 130 TLGPGEEGWDEDPASG-SPQALVILPTRELAKQVAEELSTAAARRTVRIVQVYGGRAYEP 188
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ L+ G + VVGTPGR+IDL+ R L+L+ V VVLDEAD+ML +GF DVE IL R
Sbjct: 189 QIEDLERGAEVVVGTPGRLIDLMDRGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILART 248
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMY----- 328
+R +M+FSATMP + +L +Y+ P + D+ G+++ ++ +Y
Sbjct: 249 RTDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDE----GMTVQTVQQVVYRTHSM 304
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
K ++ +++ + G+ I+F +TKR A R+A + + + LHGD+ Q RE+ L
Sbjct: 305 NKVEVVSRILQAEGR-GRTIIFARTKRTAARVADDLRTRGFAPAALHGDLGQGAREQALR 363
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
AFR+G+ ++L+ATDVAARG+DV +V V
Sbjct: 364 AFRNGKVDVLVATDVAARGIDVDDVTHV 391
>gi|310752293|gb|ADP09454.1| ATP-dependent RNA helicase [uncultured marine crenarchaeote E48-1C]
Length = 443
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 206/347 (59%), Gaps = 28/347 (8%)
Query: 70 DFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAV 129
+ K+ W+H ++ ++D L +SQ+++ + G LFPIQ
Sbjct: 7 NVKNFCDWRHKHMQIE---CFED-----------LPLSQEVMNGIEELGFRNLFPIQAQA 52
Query: 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189
+ P ++G+D+IG+A+TGTGKT AFGIP+++++ + R + LVL PTRELA QV
Sbjct: 53 IIPLLEGKDVIGQAQTGTGKTAAFGIPMVERL------NPRNNSVQGLVLEPTRELAIQV 106
Query: 190 EKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
+ + + +YGGTPI Q+ AL GV VVGTPGRVID IKR L+L+ V+
Sbjct: 107 AEHISRISKYAAFKVLPIYGGTPIRKQIFALKRGVHVVVGTPGRVIDHIKRGTLDLASVK 166
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
VVLDEAD+ML +GF +D++ IL +P NRQ+ +FSAT+ + ++ N+Y+K P + LV
Sbjct: 167 VVVLDEADRMLDMGFIDDIDYILSNVPTNRQTSLFSATIDQSVMNICNRYMKEPEKI-LV 225
Query: 308 GDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAM-A 365
+ L I Y + + K ++ ++ E H + + I+F +T+ AD+LA +
Sbjct: 226 SKDEIALTQ-IEQYYMVVNPRNKFQVLRNILDENHIR--RAIIFCRTRIGADKLAGRLRM 282
Query: 366 KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
+ Y+ +PLHG +Q+QR +FR G+ +L+ATDVAARGLD+ +
Sbjct: 283 RRYDAKPLHGGFTQAQRNFVSDSFRKGKLRLLVATDVAARGLDIQGI 329
>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
gi|448236523|ref|YP_007400581.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
gi|445205365|gb|AGE20830.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
Length = 467
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 194/317 (61%), Gaps = 12/317 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +SQ+++ A+ R G + PIQ + ++Q +D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 5 QELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ K+G + LV+APTRELA QV +E ++ + + + +YGG I Q+RAL
Sbjct: 65 ---DVKNGAIQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR+ID I R L L V VVLDEAD+ML++GF ED+E IL +P RQ+
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + +++ P V + + + I Y + +K I+ +L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
A IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G IL+
Sbjct: 237 IQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARGLD+ V V
Sbjct: 296 ATDVAARGLDISGVTHV 312
>gi|419421475|ref|ZP_13961703.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
gi|379977966|gb|EIA11291.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
Length = 560
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 189/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 289
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + + + +HGD++Q RE+ L FR G
Sbjct: 290 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 349 EATILVATDVAARGIDVTGVSHV 371
>gi|422396730|ref|ZP_16476761.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
Length = 564
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 189/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 55 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A + VYGG
Sbjct: 115 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYES 173
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 234 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 293
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + + + +HGD++Q RE+ L FR G
Sbjct: 294 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 353 EATILVATDVAARGIDVTGVSHV 375
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 191/323 (59%), Gaps = 11/323 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++++D++ A+ G IQ+ + ++G D+I +A+TGTGKTLAFG P
Sbjct: 2 ENKNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
++ + G+ + LVL PTRELA Q++ E + T + VYGG I Q
Sbjct: 62 VISTLCD----EGKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQ 117
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVGTPGRV+D I R L L + F+VLDEAD+ML++GF ED+E I+ P
Sbjct: 118 IKDIKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMASTP 177
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA-DGISLYSIATSMYEKPSI 333
+ +Q+M+FSATMP I+ L Y+K V+ + + L D I+ + A +K
Sbjct: 178 EEKQTMLFSATMPAPIKKLALNYMKKD--VEHIAILKKSLTVDKIAQHYFAVKNKDKLEA 235
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
I ++I + + I+F +TKR D L AM +K YN E +HGD+SQ+QR TL F+
Sbjct: 236 ICRII-DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKA 294
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
N L+ATDVAARG+DV N+ V
Sbjct: 295 TLNFLVATDVAARGIDVENISHV 317
>gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Carnobacterium sp. AT7]
gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Carnobacterium sp. AT7]
Length = 527
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 196/318 (61%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L ++ +++ ++ R G + PIQ + A++G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFSELGLAPELLKSVERLGFEEATPIQGQTIPLALEGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
KI N RN LV+APTRELA Q ++E + + VYGG IS Q+R
Sbjct: 61 QKIDVNN------RNVQGLVIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL VVGTPGR++D IKR L L V+ +VLDEAD+ML++GF +D+E I+ +P
Sbjct: 115 ALKDAPHIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG-ISLYSIATSMYEKPSIIG 335
RQ+++FSATMPP I+ + +++K P V + + ++D I + + +EK I+
Sbjct: 175 RQTLLFSATMPPAIKRIGVRFMKEPEHVQIKATT---MSDSLIEQFFVRCKDFEKFDIMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L I+F +TKR D LA + A+ Y E +HGD+SQ +R L AF+ G+
Sbjct: 232 RLFDVQTP-ELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKL 290
Query: 395 NILIATDVAARGLDVPNV 412
++L+ATDVAARGLD+ V
Sbjct: 291 DVLVATDVAARGLDISGV 308
>gi|417793177|ref|ZP_12440462.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis
SK255]
gi|334274175|gb|EGL92503.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis
SK255]
Length = 520
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|433447995|ref|ZP_20411254.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
gi|431999627|gb|ELK20547.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
Length = 471
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S +++ A+++ G + PIQ A + ++Q RD+IG+A+TGTGKT AFGIP+++KI N
Sbjct: 12 LSPELMKAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFGIPLIEKIDMNN 71
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVD 223
+ +V+APTRELA QV +E ++ S + + +YGG I Q+RAL
Sbjct: 72 DAVQ------AIVVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIERQIRALKKHPH 125
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+VGTPGRV+D I+R L L V VVLDEAD+ML++GF ED+E IL +P RQ+++FS
Sbjct: 126 IIVGTPGRVLDHIQRRTLRLQNVHTVVLDEADEMLNMGFVEDIEAILSHVPTERQTLLFS 185
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP IR + ++++NP V + + + I Y I +K + +L+ +
Sbjct: 186 ATMPEPIRRIAERFMQNPELVRV--KAKEMTVPNIEQYYIEIQEKKKFDTLTRLLDIQSP 243
Query: 344 GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G +IL+ATDV
Sbjct: 244 -ELAIVFGRTKRRVDELAEALNLRGYTAEGIHGDLSQAKRLSVLRKFKEGSIDILVATDV 302
Query: 403 AARGLDVPNVDLV 415
AARGLD+ V V
Sbjct: 303 AARGLDISGVTHV 315
>gi|418975118|ref|ZP_13523027.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
gi|383348489|gb|EID26448.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
Length = 515
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
Length = 538
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 191/316 (60%), Gaps = 13/316 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S + A+ G K PIQ + + G+D+IG+A+TGTGKT AF +PIL+KI
Sbjct: 9 LALSPSTLKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLPILEKI-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDY 220
+ +N LVL PTRELA QV +E F + + + +YGG Q+RAL
Sbjct: 67 ----DPKNKNVQALVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQSYDPQIRALKK 122
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRV+D ++R L L ++ +VLDEAD+ML++GF +D+E ILE+ P++RQ++
Sbjct: 123 GVQIVVGTPGRVMDHMRRGTLKLENLKMLVLDEADEMLNMGFKDDIEEILEKTPESRQTV 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
MFSATM I ++ Y KNP V +V S++ I Y + ++ + + I +
Sbjct: 183 MFSATMAREIMNIAKTYQKNPEVVKVV--SEELSNKKIDQYYVEVKRQDRVQAMIRCI-D 239
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
IVFT TKR+ D L + + Y E LHGD+ Q+QR+R +++FR NIL+A
Sbjct: 240 MMGLTSSIVFTNTKREVDELVSKLQEEGYVTEGLHGDLKQAQRDRVMNSFRRKNVNILVA 299
Query: 400 TDVAARGLDVPNVDLV 415
TD+AARG+DV NV+ V
Sbjct: 300 TDIAARGIDVSNVEAV 315
>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
Length = 467
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 193/317 (60%), Gaps = 12/317 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +SQ+++ A+ R G + PIQ + ++Q +D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 5 QELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
N K+ + LV+APTRELA QV +E ++ + + + +YGG I Q+RAL
Sbjct: 65 ---NVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR+ID I R L L V VVLDEAD+ML++GF ED+E IL +P RQ+
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + +++ P V + + + I Y + +K I+ +L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
A IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G IL+
Sbjct: 237 IQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARGLD+ V V
Sbjct: 296 ATDVAARGLDISGVTHV 312
>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
Length = 525
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|410594336|ref|YP_006951063.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
gi|410517975|gb|AFV72119.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
Length = 516
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K+P V + + + Y + EK + +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNV--NVDQYYVRVKENEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R + F++ +
Sbjct: 233 LM-DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHID 291
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 292 ILVATDVAARGLDISGV 308
>gi|345862983|ref|ZP_08815196.1| DEAD/DEAH box helicase-like protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345125866|gb|EGW55733.1| DEAD/DEAH box helicase-like protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 606
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 191/331 (57%), Gaps = 23/331 (6%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S D + L +S+ I+ ALA G PIQ+A + P ++G+D++G+A+TGTGKT AF
Sbjct: 2 STDSPIPFDSLGLSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAAF 61
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTP 210
+P+L +I + K P LVLAPTRELA QV + A + +YGG P
Sbjct: 62 ALPLLSRI-DLSRK-----TPQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYGGQP 115
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
HQ+R L GV VVGTPGRV+D I+R L L + +VLDEAD+ML +GF +DVE IL
Sbjct: 116 YDHQLRQLRRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVEWIL 175
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
E+ PQ RQ +FSATMP IR + ++L +P + K+A S + Y +
Sbjct: 176 EQTPQTRQIALFSATMPSIIRKVAQRHLNDPTEI--------KIAAKTSTATTIRQRYWQ 227
Query: 331 PSIIGQL-----ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRER 384
S + +L I E +VF +TK LA + A+ Y E L+GDI Q QRER
Sbjct: 228 VSGLHKLDALTRILECESFDAMLVFVRTKIATVELAEKLEARGYASEALNGDIPQKQRER 287
Query: 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
T+ F+ GR +IL+ATDVAARGLDV + V
Sbjct: 288 TVERFKAGRLDILVATDVAARGLDVERISHV 318
>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
Length = 524
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 535
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 191/315 (60%), Gaps = 12/315 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ + ++ A+ G + PIQ + AM G DMIG+A+TGTGKT AFGIP+++K
Sbjct: 4 FAEFGLEPKVLQAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIPLINK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRAL 218
I NE+ + L++ PTRELA QV E + L ++ +YGG I Q+RAL
Sbjct: 64 I-SINEER-----IVALIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +VQ VVLDEAD+ML +GF ED++ IL+++P+ RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVPEERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+++FSATMPP I+ L ++LKNP V ++ S Q A I +K + +L+
Sbjct: 178 TLLFSATMPPNIQKLAQQFLKNPEHVAVI--SKQVTAPTIQQNYFEVHERQKFEALCRLL 235
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ I+F +TKR D L+ + K Y + LHGD+SQ+QR+ + FRDG ++L
Sbjct: 236 -DMESPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVL 294
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARGLDV V
Sbjct: 295 VATDVAARGLDVSGV 309
>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
Length = 570
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 181/310 (58%), Gaps = 13/310 (4%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++ AL G PIQ + P + GRD+IG+A+TGTGKT AF +PIL +I N
Sbjct: 17 VLKALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPILSQIDISNS--- 73
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDYGVDAVV 226
+P LVLAPTRELA QV + F A L + +YGG Q++ L +V
Sbjct: 74 ---DPQALVLAPTRELALQVAEAFQSYASHLKGFHVLPIYGGQSYHVQLKQLRRAAHVIV 130
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVID IKR L L ++F+VLDEAD+ML +GF EDVE ++ + PQ+RQ +FSATM
Sbjct: 131 GTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEWVISQTPQSRQVALFSATM 190
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P IR + KYL +P +L + K AD I S Y K + +++ G
Sbjct: 191 PAAIRKIAQKYLNSPQ--ELAVKNQSKTADTIRQRFWPVSGYHKLDALTRILEVEDFDG- 247
Query: 347 CIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405
IVF +TK L+ + A+ YN PL GD+ Q+QRERT+ R G+ +IL+ATDVAAR
Sbjct: 248 MIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVATDVAAR 307
Query: 406 GLDVPNVDLV 415
GLDV + V
Sbjct: 308 GLDVERISHV 317
>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
Length = 520
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|392305118|emb|CCI71481.1| putative ATP-dependent RNA helicase DDX17 [Paenibacillus polymyxa
M1]
Length = 535
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 193/320 (60%), Gaps = 12/320 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GIS P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 13 NFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 72
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + PSL + VYGG + Q+R
Sbjct: 73 KL-NLDKRH-----PQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLR 126
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+L ++ +VLDEADQML +GF DVE IL+ +P
Sbjct: 127 KLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYR 186
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMP IR L Y+ P+ V + S ++ + T ++ +++
Sbjct: 187 RQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALVDM 246
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L T+ ++F +TKR A +L + + + LHGD+SQ++RE+ + AFR+ +
Sbjct: 247 LNTDRPY--LAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQ 304
Query: 396 ILIATDVAARGLDVPNVDLV 415
+L+ATDVAARGLDV V V
Sbjct: 305 LLVATDVAARGLDVEGVTHV 324
>gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 442
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 193/322 (59%), Gaps = 8/322 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ + L + G + PIQ A + A++GRD++ +A+TG+GKTLAF IP++
Sbjct: 2 VSFAELSLTSFLADRLQQAGFTAPTPIQSAAIPLALEGRDLLAQAKTGSGKTLAFLIPLI 61
Query: 159 DKIIKFNEKH-GRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMR 216
++ +K K G R+P LVLAPTRELA Q+E E + AP S+ ++ VYGG PI R
Sbjct: 62 ERAVKEGWKPAGSARSPRALVLAPTRELALQIEMELRKYAPPSVTSLAVYGGVPIERHYR 121
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL V+GTPGR++D+ L+L +++VV+DEADQML GF D++ IL+ LP
Sbjct: 122 ALRQPPMIVIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRILQLLPSQ 181
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSAT P I +L LKNP VD ++ + Y + S + +I
Sbjct: 182 RQTMLFSATFSPEILTLAESMLKNPARTAVDPGVNTPTTITHA---YYVVPSESSRVQLI 238
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
L+ G + +VF K RLA + + + + G+ SQ+QRERTL+AFR GR
Sbjct: 239 HTLLQSPESGDQSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTLTAFRSGR 298
Query: 394 FNILIATDVAARGLDVPNVDLV 415
L+ATDVAARGLDVP+V V
Sbjct: 299 LRTLVATDVAARGLDVPSVSQV 320
>gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
indolifex HEL-45]
gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
indolifex HEL-45]
Length = 438
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 196/319 (61%), Gaps = 7/319 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D + + + +VA L G+ PIQ+ + AM GRD++G A+TGTGKT AFG+P+L
Sbjct: 3 DFDMMGLPKKLVARLNEMGLKDPTPIQRQAIPQAMNGRDVMGLAQTGTGKTAAFGVPLLA 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRA 217
++++ E R+ LVLAPTRELA+Q+ + + V GG I+ Q++
Sbjct: 63 QMMEL-EGRPEPRSVRGLVLAPTRELAQQIAVNLRGYAEGTQIKVAMVVGGQSINTQIKR 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ GVD ++ TPGR++DL+ R A+ L F+VLDEADQML +GF D+ I +P+ R
Sbjct: 122 LERGVDLLIATPGRLLDLLDRRAVKLDTTTFLVLDEADQMLDMGFIHDLRKISNLIPKER 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+M+FSATMP + + N YL +P+ +++ K AD ++ + EK ++ +L
Sbjct: 182 QTMLFSATMPKLMNEIANSYLNSPIRIEV--SPPGKAADKVTQEVHFIAKAEKTELLKEL 239
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ +H KG + +VF +TK +++L + K+ ++ +HG+ SQ QR+R ++ F+ G +
Sbjct: 240 LAKH-KGERALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKGGDITV 298
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLD+P+V V
Sbjct: 299 LVATDVAARGLDIPDVKHV 317
>gi|295090645|emb|CBK76752.1| Superfamily II DNA and RNA helicases [Clostridium cf.
saccharolyticum K10]
Length = 553
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L++ I+ A+ G PIQ + ++G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ETIRFEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISH 213
+L+KI N+K +VL PTRELA QV +E A + I V YGG I
Sbjct: 62 LLEKIDPKNKKLQ------AVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L GV ++GTPGRV+D ++R + +V VVLDEAD+ML++GF ED+E IL L
Sbjct: 116 QIRSLKDGVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSEL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMP I + K+ K+P V +V ++ Y K +
Sbjct: 176 PEERQTVMFSATMPQAIAEIAKKFQKDPEIVKVV--KKDLTVPKVTQYYYDVKPKNKLEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A +VF TK+ D L A+ + Y E LHGD+ Q QR+R ++ FR G
Sbjct: 234 MCRLLDMYAP-KLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKG 292
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
R +IL+ATDVAARG+DV +V+ V + + E ++ +I R G++
Sbjct: 293 RTDILVATDVAARGIDVDDVEAVFNYDIPQDE-EYYVHRIGRTGRA 337
>gi|418202809|ref|ZP_12839238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
gi|353867366|gb|EHE47261.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
Length = 517
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 194/310 (62%), Gaps = 12/310 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L+KI
Sbjct: 1 MSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKI---- 56
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
LV+APTRELA Q ++E S + VYGG+ I Q++AL G
Sbjct: 57 --RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAH 114
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+NRQ+++FS
Sbjct: 115 IVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFS 174
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343
ATMP I+ + +++K P V + + + + + Y I EK + +L+ + A+
Sbjct: 175 ATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTRLM-DVAQ 231
Query: 344 GGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
IVF +TKR D L + + + E +HGD+ Q++R R L F++G ++L+ATDV
Sbjct: 232 PELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDV 291
Query: 403 AARGLDVPNV 412
AARGLD+ V
Sbjct: 292 AARGLDISGV 301
>gi|383316474|ref|YP_005377316.1| DNA/RNA helicase [Frateuria aurantia DSM 6220]
gi|379043578|gb|AFC85634.1| DNA/RNA helicase, superfamily II [Frateuria aurantia DSM 6220]
Length = 603
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 192/319 (60%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L + +I+ AL G PIQ A + P ++GRD++G+A+TGTGKT AF +P+L +
Sbjct: 15 FSALPLRPEILQALREVGYESPSPIQSATIPPLLEGRDVLGQAQTGTGKTAAFALPVLSR 74
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I + + K P LVLAPTRELA QV + F A P + +YGG Q++A
Sbjct: 75 IERDSNK------PQALVLAPTRELAIQVAEAFQRYAAHMPGFHILPIYGGQSYGPQLQA 128
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV +VGTPGRVID + R +L+LSE++F+VLDEAD+ML +GF +DVE +LE P R
Sbjct: 129 LRRGVQVIVGTPGRVIDHLTRGSLDLSELKFLVLDEADEMLRMGFIDDVEKVLEATPPTR 188
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q +FSATMP IR + ++LK P+ V + + + Y + +++ ++
Sbjct: 189 QVALFSATMPSQIRKIAQQHLKTPVEVTIKAATSTN-TNIRQRYWWVSGLHKLDAMT--R 245
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
I E IVF +TK+ + L+ + A+ + ++GDI+Q QRER + +DG+ +I
Sbjct: 246 ILEAESFDAMIVFARTKQATEELSERLQARGFAAAAINGDIAQPQRERVIQQLKDGKLDI 305
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLDV + V
Sbjct: 306 LVATDVAARGLDVERISHV 324
>gi|326774180|ref|ZP_08233462.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
gi|326636319|gb|EGE37223.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
Length = 558
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 210/351 (59%), Gaps = 24/351 (6%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISK-----LDISQDIVAALARRGISKLFPIQKAVLEPAM 134
A + V D D + + + D+S+ + +I AL +GI+ FPIQ L A+
Sbjct: 46 AHAPVLDEATPDITDEGDQTDLSRKTFADFGVEPEICEALDAKGITHPFPIQALTLPVAL 105
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQV 189
+G+D+IG+A+TGTGKTL FGIP+L + ++E G +P LV+ PTRELAKQV
Sbjct: 106 EGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGWDEDPASG-SPQALVILPTRELAKQV 164
Query: 190 EKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
+E +A ++ + VYGG Q+ L+ G + VVGTPGR+IDL++R L+L+ V
Sbjct: 165 AEELSTAAAKRTVRIVQVYGGRAYEPQIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVT 224
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
VVLDEAD+ML +GF DVE IL R +R +M+FSATMP + +L +Y+ P +
Sbjct: 225 TVVLDEADEMLDLGFLPDVEKILARTRADRHTMLFSATMPGAVVALARRYMTRPTHIRAQ 284
Query: 308 GDSDQKLADGISLYSIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAH 362
D+ G+++ ++ +Y K ++ +++ + G+ I+F +TKR A R+A
Sbjct: 285 DPGDE----GMTVQTVQQVVYRTHSMNKVEVVSRILQAEGR-GRTIIFARTKRTAARVAD 339
Query: 363 AM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
+ A+ + LHGD+ Q RE+ L AFR+ + ++L+ATDVAARG+DV +V
Sbjct: 340 DLRARGFATGALHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDV 390
>gi|400293793|ref|ZP_10795634.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
gi|399901102|gb|EJN84016.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
Length = 560
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 209/351 (59%), Gaps = 24/351 (6%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISK-----LDISQDIVAALARRGISKLFPIQKAVLEPAM 134
A + V D D + + + D+++ + +I AL +GI+ FPIQ L A+
Sbjct: 43 AHAPVLDEATPDITDEGDSTDLTRKTFADFGVEPEICEALGAKGITHPFPIQALTLPVAL 102
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQV 189
+G+D+IG+A+TGTGKTL FGIP+L + ++E G +P LV+ PTRELAKQV
Sbjct: 103 EGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGWDEDPASG-SPQGLVILPTRELAKQV 161
Query: 190 EKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
+E +A ++ + VYGG Q+ L G + VVGTPGR+IDL+ R L+L+ V
Sbjct: 162 AEELTTAAAKRTVRIVQVYGGRAYEPQIEDLGRGAEVVVGTPGRLIDLMDRGVLDLAHVT 221
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
VVLDEAD+ML +GF DVE IL R +R +M+FSATMP + +L +Y+ P +
Sbjct: 222 TVVLDEADEMLDLGFLPDVEKILARTRTDRHTMLFSATMPGAVVALARRYMTRPTHIRAQ 281
Query: 308 GDSDQKLADGISLYSIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAH 362
D+ G+++ ++ +Y K ++ +++ + G+ I+F +TKR A R+A
Sbjct: 282 DPGDE----GMTVQTVQQVVYRTHSMNKVEVVSRILQAEGR-GRTIIFARTKRTAARVAD 336
Query: 363 AM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
+ ++ + LHGD+ Q RE+ L AFR+G+ ++L+ATDVAARG+DV +V
Sbjct: 337 DLRSRGFATAALHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDDV 387
>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
Length = 525
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTH 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|283798617|ref|ZP_06347770.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
gi|291073603|gb|EFE10967.1| DEAD/DEAH box helicase [Clostridium sp. M62/1]
gi|295115719|emb|CBL36566.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
SM4/1]
Length = 553
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L++ I+ A+ G PIQ + ++G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ETIRFEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISH 213
+L+KI N+K +VL PTRELA QV +E A + I V YGG I
Sbjct: 62 LLEKIDPKNKKLQ------AVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L GV ++GTPGRV+D ++R + +V VVLDEAD+ML++GF ED+E IL L
Sbjct: 116 QIRSLKDGVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSEL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P+ RQ++MFSATMP I + K+ K+P V +V ++ Y K +
Sbjct: 176 PEERQTVMFSATMPQAIAEIAKKFQKDPEIVKVV--KKDLTVPKVTQYYYDVKPKNKLEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +L+ +A +VF TK+ D L A+ + Y E LHGD+ Q QR+R ++ FR G
Sbjct: 234 MCRLLDMYAP-KLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKG 292
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
R +IL+ATDVAARG+DV +V+ V + + E ++ +I R G++
Sbjct: 293 RTDILVATDVAARGIDVDDVEAVFNYDIPQDE-EYYVHRIGRTGRA 337
>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 518
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 197/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ D+S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFDLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPDS 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + D + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTDLVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|335998488|ref|ZP_08564399.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
gi|335348343|gb|EGM49849.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
Length = 506
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 196/317 (61%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L + +D++ A+ R G + PIQ+A + + G D+IG+A+TGTGKT AFG+PIL
Sbjct: 10 LKFNELGLEEDLLKAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPIL 69
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+ E+H + +V++PTRELA Q ++E + VYGG I Q++
Sbjct: 70 QHV-DVKEEHIQ-----AIVVSPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIK 123
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L + +VGTPGR++D I R ++LS V+ +VLDEAD+ML +GF ED+E I++ +P+
Sbjct: 124 LLKHVPQILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEE 183
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP IRS+ K++ P V++ + + D + Y + YEK I+ +
Sbjct: 184 RQTLLFSATMPKAIRSIGEKFMHEPQVVNI--KAKELTTDLVDQYFVKAREYEKFDIMTR 241
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ A IVF +TKR D L+ + A+ YN +HGD++Q +R L F++GR +
Sbjct: 242 ILDVQAP-ELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLD 300
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 301 ILVATDVAARGLDISGV 317
>gi|343522606|ref|ZP_08759572.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
gi|343402015|gb|EGV14521.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
Length = 558
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 210/351 (59%), Gaps = 24/351 (6%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISK-----LDISQDIVAALARRGISKLFPIQKAVLEPAM 134
A + V D D + + + D+S+ + +I AL +GI+ FPIQ L A+
Sbjct: 46 AHAPVLDEATPDITDEGDQTDLSRKTFADFGVEPEICEALDAKGITHPFPIQALTLPVAL 105
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQV 189
+G+D+IG+A+TGTGKTL FGIP+L + ++E G +P LV+ PTRELAKQV
Sbjct: 106 EGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGWDEDPASG-SPQALVILPTRELAKQV 164
Query: 190 EKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
+E +A ++ + VYGG Q+ L+ G + VVGTPGR+IDL++R L+L+ V
Sbjct: 165 AEELSTAAAKRTVRIVQVYGGRAYEPQIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVT 224
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
VVLDEAD+ML +GF DVE IL R +R +M+FSATMP + +L +Y+ P +
Sbjct: 225 TVVLDEADEMLDLGFLPDVEKILARTRADRHTMLFSATMPGAVVALARRYMTRPTHIRAQ 284
Query: 308 GDSDQKLADGISLYSIATSMY-----EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAH 362
D+ G+++ ++ +Y K ++ +++ + G+ I+F +TKR A R+A
Sbjct: 285 DPGDE----GMTVQTVQQVVYRTHSMNKVEVVSRILQAEGR-GRTIIFARTKRTAARVAD 339
Query: 363 AM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
+ A+ + LHGD+ Q RE+ L AFR+ + ++L+ATDVAARG+DV +V
Sbjct: 340 DLRARGFATGALHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDV 390
>gi|441514562|ref|ZP_20996379.1| putative ATP-dependent RNA helicase [Gordonia amicalis NBRC 100051]
gi|441450631|dbj|GAC54340.1| putative ATP-dependent RNA helicase [Gordonia amicalis NBRC 100051]
Length = 536
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 189/327 (57%), Gaps = 16/327 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + + IV+ALA G + F IQ+ L A++G D+IG+ARTG GKT FGIP+L +
Sbjct: 20 FAELGVDERIVSALADDGKTHTFAIQELTLPLALEGHDLIGQARTGMGKTFGFGIPLLHR 79
Query: 161 IIKFNEKHGR--GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI------------CVY 206
+ R P L++ PTREL QV + +APSL+ +Y
Sbjct: 80 LAHAEASGVRPLDNTPRALIIVPTRELCVQVTGDLQVAAPSLEVTLADGTRRPLKVTSIY 139
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GG P Q+ L GVD VVGTPGR++DL ++ L L +V +VLDEAD+ML +GF D+
Sbjct: 140 GGRPYEAQIAELQSGVDVVVGTPGRLLDLAQQGHLVLGKVSILVLDEADEMLDLGFLPDI 199
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
E I+ LP RQ+M+FSATMP I +L +L P + +D + D Y+
Sbjct: 200 ERIMSALPTPRQTMLFSATMPGPIVTLARTFLHRPTHIRAENANDSAVHDRTKQYAYRAH 259
Query: 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERT 385
+K ++ +++ +G +VFT+TKR A ++A +A + + +HGD+ Q RE+
Sbjct: 260 ALDKAELVARILQADGRGA-TMVFTRTKRTAQKVADDLAERGFKVGAVHGDLGQIAREKA 318
Query: 386 LSAFRDGRFNILIATDVAARGLDVPNV 412
L FRDG ++L+ATDVAARG+D+ +V
Sbjct: 319 LKRFRDGAIDVLVATDVAARGIDIDDV 345
>gi|386850704|ref|YP_006268717.1| Cold-shock DEAD box protein A [Actinoplanes sp. SE50/110]
gi|359838208|gb|AEV86649.1| Cold-shock DEAD box protein A [Actinoplanes sp. SE50/110]
Length = 569
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 191/322 (59%), Gaps = 14/322 (4%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+S D G + L + +++ AL G + PIQ+ + P + G D++G+A TGTGKT A
Sbjct: 7 NSTDGGF--AGLGLRPELLRALTDLGYEEPTPIQREAITPLVAGHDLVGQAATGTGKTAA 64
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
F +P+L + G P LVL PTRELA+QV + H L+ + VYGG P
Sbjct: 65 FALPLLQSLTP-----GSADTPTALVLVPTRELAEQVSQAVHRYGRDLNVRVLPVYGGQP 119
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
IS Q++ L GVD VVGTPGRV+D I+R L L ++ VVLDEAD+ML +GFAED+E IL
Sbjct: 120 ISRQLQVLRRGVDVVVGTPGRVLDHIERETLRLDAIRTVVLDEADEMLDMGFAEDIEAIL 179
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330
P RQ+++FSATMPP I ++ ++L++PL + + D AD + +T M +
Sbjct: 180 AETPAERQTVLFSATMPPRIDAIARRHLRDPLRIRM--GRDTAAADALPSVRQSTYMVAR 237
Query: 331 PSIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLS 387
P L I + G IVF +T+ + + + ++ + Y E LHG +SQ QR+R +S
Sbjct: 238 PHKAAALGRILDVEMPGAAIVFCRTREEVEEVTESLNGRGYRAEALHGGLSQDQRDRVMS 297
Query: 388 AFRDGRFNILIATDVAARGLDV 409
R G +L+ATDVAARGLDV
Sbjct: 298 RLRAGTTELLVATDVAARGLDV 319
>gi|407698821|ref|YP_006823608.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247968|gb|AFT77153.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
Length = 608
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/316 (43%), Positives = 190/316 (60%), Gaps = 13/316 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLKGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I+ +T +YLK+P V + S A I + + K + +++
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIA--SKVSTASTIRQRYCQIAPHHKLEALTRIMEV 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G I+F +TK LA + A+ Y+ EPL+GDI Q+ RERT+ + G+ +IL+A
Sbjct: 244 EVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVA 302
Query: 400 TDVAARGLDVPNVDLV 415
TDV ARGLDV V V
Sbjct: 303 TDVVARGLDVERVSHV 318
>gi|419781258|ref|ZP_14307090.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
gi|383184650|gb|EIC77164.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
Length = 525
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|375007039|ref|YP_004980670.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285886|gb|AEV17570.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 467
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 193/317 (60%), Gaps = 12/317 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +SQ+++ A+ R G + PIQ + ++Q +D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 5 QELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
N K+ + LV+APTRELA QV +E ++ + + + +YGG I Q+RAL
Sbjct: 65 ---NVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIDRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR+ID I R L L V VVLDEAD+ML++GF ED+E IL +P RQ+
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + +++ P V + + + I Y + +K I+ +L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
A IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G IL+
Sbjct: 237 IQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARGLD+ V V
Sbjct: 296 ATDVAARGLDISGVTHV 312
>gi|338210794|ref|YP_004654843.1| DEAD/DEAH box helicase [Runella slithyformis DSM 19594]
gi|336304609|gb|AEI47711.1| DEAD/DEAH box helicase domain protein [Runella slithyformis DSM
19594]
Length = 570
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 212/365 (58%), Gaps = 15/365 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S++I+ A+ G +K PIQ + ++GRD++G+A+TGTGKT AFGIP L+K+
Sbjct: 8 LGLSEEILKAVTEMGFTKPSPIQAEAIPSLLEGRDVLGQAQTGTGKTAAFGIPALEKV-D 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
++K + L+L PTRELA QV +E A L VYGG I Q+R+L
Sbjct: 67 ISDKRTQ-----VLMLCPTRELAVQVTEELRRIAKYKKGLKLETVYGGDSIERQIRSLKI 121
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGRV+DLI+R AL L V +VVLDEAD+ML +GF ED++ ILE +P RQ++
Sbjct: 122 GAQIVVGTPGRVMDLIERKALKLDFVNYVVLDEADEMLDMGFREDIDTILESVPDERQTV 181
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATM I + K+ ++P+ + + + + I K + +++
Sbjct: 182 LFSATMSKPIMGIAQKFQEDPVQIKIT--RKEVTNENIEQTYFEVKQRGKIEVTCRVLDA 239
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ + I+F TKR D + + +K Y+ E LHGD+ Q+QR + ++ FR G NIL+A
Sbjct: 240 YDL-KQVIIFCNTKRKVDEVTEELSSKGYSVESLHGDLRQTQRNQVMAKFRSGAANILVA 298
Query: 400 TDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKSRVLSEMLDADLLSSQGSPLKE 459
TDVAARG+DV +D V L E ++ +I R G++ + + L + + L++
Sbjct: 299 TDVAARGIDVSGIDAVINFDLPLDE-EYYVHRIGRTGRAGLTGKALTL-VAKDEKYRLRQ 356
Query: 460 VETCT 464
+ET T
Sbjct: 357 IETYT 361
>gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase [Anaerococcus prevotii DSM 20548]
gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM
20548]
Length = 536
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 194/321 (60%), Gaps = 14/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L+I +I+ A+ G K PIQ+ + ++G D+IG+++TG+GKT AF IPI+
Sbjct: 1 MKFNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
+ I E +G + L+L PTREL QV KE ++ + + VYGG+ I Q+
Sbjct: 61 ENI----EANGITQ---ALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
++L GV+ VVGTPGR++DL++R L L +++ VVLDEAD+M +GF +D++ IL+R
Sbjct: 114 KSLKKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNP 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
NRQ+ FSATM P I+ + Y NP V + S + D I Y I K +
Sbjct: 174 NRQTCFFSATMGPEIQEFSKLYQTNPYEVKI--KSKEVTVDRIDQYYIKLKESMKEEALM 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ H K IVF TKR DRL ++ K+Y + LHGD+ QS R++ + FR+
Sbjct: 232 RLLEIH-KANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTI 290
Query: 395 NILIATDVAARGLDVPNVDLV 415
IL+ATD+AARGLDV +VD+V
Sbjct: 291 QILVATDIAARGLDVDDVDIV 311
>gi|417915918|ref|ZP_12559512.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
gi|342831712|gb|EGU66023.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
Length = 525
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K+P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
Length = 467
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 196/317 (61%), Gaps = 12/317 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +S++++ A+ R G + PIQ + ++Q +D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 5 QELGLSKEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ K+G + LV+APTRELA QV +E ++ + + + +YGG I Q+RAL
Sbjct: 65 ---DVKNGAIQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR+ID I R L L V+ VVLDEAD+ML++GF ED+E IL +P RQ+
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + +++ +P V + + + I Y + +K I+ +L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNDPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
A IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G IL+
Sbjct: 237 IQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILV 295
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARGLD+ V V
Sbjct: 296 ATDVAARGLDISGVTHV 312
>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
Length = 528
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 200/346 (57%), Gaps = 14/346 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L IS +I A+A G PIQ+ + + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 EKIKFEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISH 213
LD I N ++ +VL PTRELA Q +E H+ ++ + VYGG PI
Sbjct: 62 ALDTIDLDN------KSLQIMVLCPTRELAIQATQEVHKLGKYKKGINVLAVYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV ++GTPGRVID I+R L ++ +VLDEAD+ML +GF +D+E I++ +
Sbjct: 116 QIKALKRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQAI 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
PQNRQ+++FSATM I L+ KY N + +V Q I + K +
Sbjct: 176 PQNRQTILFSATMAKAIIELSKKYQNNAEFIKVV--HKQLTVPNIEQRYLEVKENNKLEV 233
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ +LI + ++F TK+ D + + A+ Y E LHGD+ Q QR+R ++ FR+G
Sbjct: 234 LSRLI-DMRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNG 292
Query: 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
IL+ATDVAARG+DV +V+ V L + E ++ +I R G++
Sbjct: 293 TIEILVATDVAARGIDVDDVEAVFNYDLPQDE-EYYVHRIGRTGRA 337
>gi|339494494|ref|YP_004714787.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338801866|gb|AEJ05698.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 553
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 194/316 (61%), Gaps = 13/316 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL K
Sbjct: 8 FAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F + P + + +YGG P+ Q++A
Sbjct: 68 IDPAK------REPQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++R
Sbjct: 122 IRQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
QS++FSAT+P IR++ K+L+ P + + + Q +A I + +K + +L
Sbjct: 182 QSVLFSATLPHSIRAIAEKHLREPQHIKIAAKT-QTVAR-IEQAHLMVHADQKIQAVLRL 239
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 240 L-EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNV 412
++ATDVAARG+DVP +
Sbjct: 299 VVATDVAARGIDVPRI 314
>gi|146282848|ref|YP_001173001.1| DEAD/DEAH box helicase [Pseudomonas stutzeri A1501]
gi|145571053|gb|ABP80159.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
A1501]
Length = 553
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 194/316 (61%), Gaps = 13/316 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL K
Sbjct: 8 FAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
I R P L+LAPTRELA QV F + P + + +YGG P+ Q++A
Sbjct: 68 IDPAK------REPQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++R
Sbjct: 122 IRQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
QS++FSAT+P IR++ K+L+ P + + + Q +A I + +K + +L
Sbjct: 182 QSVLFSATLPHSIRAIAEKHLREPQHIKIAAKT-QTVAR-IEQAHLMVHADQKIQAVLRL 239
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E I F +TK+ LA A+ AK Y L+GDI+Q+QRER + + +DGR +I
Sbjct: 240 L-EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNV 412
++ATDVAARG+DVP +
Sbjct: 299 VVATDVAARGIDVPRI 314
>gi|443307170|ref|ZP_21036957.1| rhlE [Mycobacterium sp. H4Y]
gi|442764538|gb|ELR82536.1| rhlE [Mycobacterium sp. H4Y]
Length = 509
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 132/362 (36%), Positives = 202/362 (55%), Gaps = 12/362 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + +IV ALA +GI F IQ+ L A+ G D+IG+ARTG GKT AFG+P+L +
Sbjct: 12 FAQLGVRDEIVRALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--------DTICVYGGTPIS 212
I + P L++ PTREL QV + +A L + +YGG P
Sbjct: 72 ITSGTAERPLNGTPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYE 131
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL G D VVGTPGR++DL ++ L L + +VLDEAD+ML +GF D+E IL +
Sbjct: 132 AQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P +RQSM+FSATMP I +L ++ P + D Y+ +K
Sbjct: 192 IPVDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYAYRAHALDKVE 251
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++ +++ +G ++FT+TKR A ++A +A + + +HGD+ Q RE+ L AFR
Sbjct: 252 LVSRILQAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRT 310
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDADL 449
G ++L+ATDVAARG+D+ +V V + E ++ + R GK+ V ++D D
Sbjct: 311 GDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDE 370
Query: 450 LS 451
L+
Sbjct: 371 LT 372
>gi|449889270|ref|ZP_21787529.1| ATP-dependent RNA helicase [Streptococcus mutans SA41]
gi|450039476|ref|ZP_21836209.1| ATP-dependent RNA helicase [Streptococcus mutans T4]
gi|449200387|gb|EMC01417.1| ATP-dependent RNA helicase [Streptococcus mutans T4]
gi|449250267|gb|EMC48338.1| ATP-dependent RNA helicase [Streptococcus mutans SA41]
Length = 517
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 199/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + IQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSSIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + D + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTDLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 585
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 195/323 (60%), Gaps = 13/323 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L + L + +++ AL G IQ A + +QGRD++G A+TGTGKT AF +P
Sbjct: 17 ETLTFADLGLDANVLKALKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALP 76
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISH 213
+L ++ H +NP LVLAPTRELA QV + F + A + + V YGG
Sbjct: 77 VLSQM---ETGH---KNPQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQ 130
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD +VGTPGR++D + + L+LSE++F+VLDEAD+ML +GFAEDVE IL
Sbjct: 131 QLSALRRGVDVIVGTPGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADT 190
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +Q +FSATMP IR ++ +YL +P + V A+ Y I + + ++
Sbjct: 191 PSTKQVALFSATMPAQIRRISAQYLNDPEEI-TVKTKTTTSANITQRYLIVSYQQKIDAL 249
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
L E+ +G IVFT+TK + + +A + A+ Y ++GDI+Q QRERT++ + G
Sbjct: 250 TRILEVENFEG--MIVFTRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSG 307
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ +IL+ATDVAARGLDV + V
Sbjct: 308 KLDILVATDVAARGLDVERISHV 330
>gi|449933031|ref|ZP_21803081.1| ATP-dependent RNA helicase [Streptococcus mutans 3SN1]
gi|449160654|gb|EMB63903.1| ATP-dependent RNA helicase [Streptococcus mutans 3SN1]
Length = 517
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 199/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K P V + + + + Y I EK +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTYLVDQYYIRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + Y E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|365156794|ref|ZP_09353090.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
gi|363626851|gb|EHL77816.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
Length = 473
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 196/316 (62%), Gaps = 12/316 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ + G + PIQ A + ++ G+D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 6 ELGLSPALLKSIDQLGFEEATPIQAATIPKSLDGKDLIGQAQTGTGKTAAFGIPLMEKID 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDY 220
N H +G +++APTRELA QV +E ++ + + VYGG I Q+RAL
Sbjct: 66 TKNH-HIQG-----MIIAPTRELAIQVSEELYKIGYHKRVRILAVYGGQDIQRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L + +VLDEAD+ML++GF +D+E IL +P+ RQ++
Sbjct: 120 QPHVIVGTPGRILDHINRQTLKLDHLHTLVLDEADEMLNMGFIQDIETILSHMPKERQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR++ K++KNP V + + + I Y I EK ++ +L+
Sbjct: 180 LFSATMPEPIRAIAEKFMKNPELVQV--KAKEMTVPQIEQYFIKIQEREKFDVLSRLLDV 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L A+ + Y+ E +HGD+SQ +R L F++G+ ++L+A
Sbjct: 238 QSP-ELAIVFGRTKRRVDELTRALTLRGYSAEGIHGDLSQMKRLNVLKKFKEGKVDVLVA 296
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARGLD+ V V
Sbjct: 297 TDVAARGLDISGVTHV 312
>gi|357589331|ref|ZP_09127997.1| hypothetical protein CnurS_03986 [Corynebacterium nuruki S6-4]
Length = 449
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 196/315 (62%), Gaps = 4/315 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV ALA +GI + F IQ+ L A+ G+D+IG+ARTG GKTL FG+P+LD+
Sbjct: 9 FTELGVAAEIVDALAEKGIDRTFAIQERTLPIALTGKDLIGQARTGMGKTLGFGVPLLDR 68
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + LV+ PTREL QV ++ ++A L +YGG P Q AL
Sbjct: 69 VFDDADVTAPDGTVRALVVVPTRELCIQVAEDLSDAAAHLPLTVTTIYGGVPFEKQTEAL 128
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+G D VVGTPGR++DL ++ L+LS V+ +VLDEAD+ML GF +DV+ I+ + +RQ
Sbjct: 129 AHGTDIVVGTPGRLLDLSRQQLLDLSHVEILVLDEADEMLDQGFLDDVKAIMAQTAPHRQ 188
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338
+M+FSATMP I +L+ ++ +P+ + Q + + ++ S++ +L+
Sbjct: 189 TMLFSATMPGPIVALSRGFMDHPVRIRADTTDAQPTHATTTQTVFQSHKLDRMSVLARLL 248
Query: 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397
+ G+ IVF +TKR A +A+ +A + +HGD+ Q RE++L+AFR+G +I+
Sbjct: 249 QTPGR-GRTIVFARTKRQAAMVANDLADLGFRVGAVHGDMRQKDREQSLAAFREGTVDIM 307
Query: 398 IATDVAARGLDVPNV 412
+ATDVAARG+DV +V
Sbjct: 308 VATDVAARGIDVDDV 322
>gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
Length = 627
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 193/323 (59%), Gaps = 12/323 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E ++L +S+ + AL + G + P+Q A + + G D++G A+TGTGKT AFG+P
Sbjct: 3 ESPSFAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLP 62
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISH 213
++D I R L+LAPTRELA QV + F S L+ + VYGG P+
Sbjct: 63 LIDSIDPAQ------RRVQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGV 116
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+RAL G VVGTPGRV+D IKR L L ++ VVLDEAD+ML +GF E++E ILE+
Sbjct: 117 QIRALRDGAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQT 176
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P RQ+ +FSATMP IR + +++++ P + +G ++ D Y + + K
Sbjct: 177 PAERQTTLFSATMPAPIRRIAHRHMREPQEI-RIGAGNEAGTDIDQSYCLVDQRH-KTEA 234
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+G++I A IVF +TK +A A+ A+ PL+GD+ Q +RER ++ RDG
Sbjct: 235 LGRMIEVEAGLDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDG 294
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
R ++++ATDVAARG+DVP + V
Sbjct: 295 RLDVIVATDVAARGIDVPRITHV 317
>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
Length = 654
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 188/317 (59%), Gaps = 13/317 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ +++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 33 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 93 KVDLSQHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR 146
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R L L EV VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 147 ALKNGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET 206
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+NP +D+ G++ + + EK + +
Sbjct: 207 AQRVLFSATMPPIVKEIVDRFLRNPARIDVAGEN--RTVSKVEQQFWVVKGVEKDEAMSR 264
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E IVF +T++D +RLA + ++ + LHGDI QS RERT+ + G +
Sbjct: 265 LL-ETEDTDASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVID 323
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDV ARGLDVP +
Sbjct: 324 ILVATDVVARGLDVPRI 340
>gi|357418161|ref|YP_004931181.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355335739|gb|AER57140.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 646
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 193/319 (60%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L +S ++AALA G PIQ A + + GRD++G A+TGTGKT AF +P+L
Sbjct: 12 FSALGLSAPVMAALATVGYESPSPIQAATIPALLAGRDVLGTAQTGTGKTAAFALPVLSN 71
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ K P LVLAPTRELA QV + F + A P + +YGG + Q++A
Sbjct: 72 LDLAAGK------PQALVLAPTRELAIQVAEAFQKYAASIPGFHVLPIYGGQAYAPQLQA 125
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID ++R +L+LS + +VLDEAD+ML +GF +DVE +L++ P+ R
Sbjct: 126 LKRGVHVVVGTPGRVIDHLERGSLDLSGLATLVLDEADEMLRMGFIDDVETVLKKTPETR 185
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q +FSATMPP IR + YLK+P+ V++ + A+ Y + +++ ++ L
Sbjct: 186 QVALFSATMPPAIRRIAQTYLKDPVEVNIAARTTTS-ANITQRYWFVSGLHKLDALTRIL 244
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E G I+F +TK + LA + A+ ++GD+ Q+ RE+T++ +DG+ +I
Sbjct: 245 EAEPFDG--MIIFVRTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDI 302
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLDV V V
Sbjct: 303 LVATDVAARGLDVERVSHV 321
>gi|392947743|ref|ZP_10313371.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
gi|334881219|emb|CCB82055.1| ATP-dependent RNA helicase [Lactobacillus pentosus MP-10]
gi|339637663|emb|CCC16621.1| ATP-dependent RNA helicase [Lactobacillus pentosus IG1]
gi|392437023|gb|EIW14919.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
Length = 526
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 193/320 (60%), Gaps = 12/320 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S ++ A+ R G + PIQ + ++G+D+IG+A+TGTGKT AF +PIL
Sbjct: 1 MKFTELGLSDSLLKAVQRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
++ FN N LV++PTRELA Q ++E VYGG I Q+R
Sbjct: 61 QRL-DFN-----NHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L +VGTPGR++D I+R + L V+ +VLDEAD+ML++GF ED+E I++++P
Sbjct: 115 NLKQNPQVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMPP I+ + +++K P V + S + AD + Y + +EK I+ +
Sbjct: 175 RQTMLFSATMPPEIKRIGVQFMKEPHHVKI--KSKEMTADTVDQYYVKAKEFEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L A IVF +TKR D L+ + A+ YN +HGD+SQ +R + + F+ G+ +
Sbjct: 233 LFDVQAP-ELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLD 291
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLDV V V
Sbjct: 292 ILVATDVAARGLDVSGVTHV 311
>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
Length = 537
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 219/376 (58%), Gaps = 35/376 (9%)
Query: 61 EFHAISRPLDFKSSIAWQHAQSAVDDYVAYD---DSSKDEGLDISKLDISQ--------- 108
E AIS + S++A AQ AVD A D +S D+ ++S I+
Sbjct: 28 ETQAIS--TETTSAVASTAAQVAVD-LSALDCASSTSADDSAEVSTTVIAATPSGFASFG 84
Query: 109 ---DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+++ AL G + PIQKA + + GRD++G+A+TGTGKT AF +P+L +
Sbjct: 85 FAPELLDALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPMLAAL---- 140
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
G+ R P LVL PTRELA QV F A P L + +YGG+ Q+ L GV
Sbjct: 141 --DGQQRTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLKRGV 198
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
VVGTPGRV+D +++ L+LS ++ +VLDEAD+ML +GF +DVE +LE+LP RQ ++F
Sbjct: 199 QIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQVVLF 258
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG--ISLYSIATSMYEKPSIIGQLITE 340
SATMPP IR +++KYL +P V + K AD I I + +K + +++
Sbjct: 259 SATMPPEIRRISHKYLNDPAEVTI----KTKGADSSRIRQRFITVNGPQKLEALTRVLES 314
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
K G I+F +TK +A A+ AK Y+ L+GD++QSQRERT+ ++G ++L+A
Sbjct: 315 ETKEG-VIIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVA 373
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARGLDV + LV
Sbjct: 374 TDVAARGLDVDRITLV 389
>gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus
pyogenes M49 591]
Length = 385
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 202/318 (63%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K+P V + +++L + + Y + EK +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI---KNKELTNVNVDQYYVRVKEQEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D + + + + E +HGD+ Q++R R + F++ +
Sbjct: 232 RLMDVN-QPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|386362972|ref|YP_006072303.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pyogenes
Alab49]
gi|350277381|gb|AEQ24749.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pyogenes
Alab49]
Length = 539
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 202/318 (63%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFKKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K+P V + +++L + + Y + EK +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI---KNKELTNVNVDQYYVRVKEQEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D + + + + E +HGD+ Q++R R + F++ +
Sbjct: 232 RLMDVN-QPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704901|ref|YP_005203360.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282604|gb|EDT48028.1| DEAD/DEAH box helicase [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374681600|gb|AEZ61889.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 533
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 199/318 (62%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S+ I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTSRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
+RQ+++FSATMP I+ + ++KNP V + + + + I Y + EK +
Sbjct: 174 SRQTLLFSATMPEPIKRIGVNFMKNPEHVKIA--AKELTTELIDQYYLRVKENEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D L + + + E +HGD+ Q +R R L F++
Sbjct: 232 RLM-DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNL 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
Length = 539
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 202/318 (63%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K+P V + +++L + + Y + EK +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI---KNKELTNVNVEQYYVRVKEQEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D + + + + E +HGD+ Q++R R + F++ +
Sbjct: 232 RLMDVN-QPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|341820184|emb|CCC56422.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella thailandensis
fsh4-2]
Length = 512
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 198/320 (61%), Gaps = 12/320 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +++D++ A+ + G + PIQ+ + M G+D+IG+A+TGTGKT AFG+PIL
Sbjct: 1 MKFSELGLTKDLLTAIEKHGYVEATPIQEETIPLTMAGKDVIGQAQTGTGKTAAFGLPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+ I N ++ LV++PTRELA Q ++E + + V+GG+ I Q+
Sbjct: 61 EMIDNEN------KDVQALVVSPTRELAIQTQEELFKLGHDKHVRVQAVFGGSDIRRQIN 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L +G VVGTPGR+ID I+R +NLS V+ +VLDEAD+ML++GF ED+E IL+ +P
Sbjct: 115 GLKHGAQIVVGTPGRLIDHIRRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++ NP + + + + D + Y + +EK ++ +
Sbjct: 175 RQTLLFSATMPAAIKRIGVQFMTNPEHIQIA--AKELTTDLVDQYYVRVRDFEKFDVLTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ + + I+F +TKR D L + + +N +HGD++Q +R + L F+ G
Sbjct: 233 IL-DVQQPKLAIMFGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRTQVLKQFKHGEIQ 291
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLDV VD V
Sbjct: 292 ILVATDVAARGLDVSGVDYV 311
>gi|335419959|ref|ZP_08551002.1| Cold-shock DEAD-box protein A [Salinisphaera shabanensis E1L3A]
gi|334895605|gb|EGM33773.1| Cold-shock DEAD-box protein A [Salinisphaera shabanensis E1L3A]
Length = 609
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 188/322 (58%), Gaps = 15/322 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L +S ++AALA G PIQ A + P + G+D++G+A+TGTGKT AF +PIL
Sbjct: 14 FSDLALSDAVMAALADVGYETPSPIQAATIPPLLDGKDVLGQAQTGTGKTAAFALPILSG 73
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ ++ G+ P LVL PTREL QV + F A P + +YGG Q+ A
Sbjct: 74 L---PDRGKGGKGPQALVLTPTRELTIQVAEAFQRYASHIPGFHVLPIYGGQGYGPQLAA 130
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV+ VVGTPGRV+D +KR L L + ++VLDEAD+ML +GF EDVE I E P R
Sbjct: 131 LKRGVNVVVGTPGRVMDHLKRGTLKLDALDWMVLDEADEMLRMGFIEDVEWIFEHTPPQR 190
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL---YSIATSMYEKPSII 334
Q +FSATMP IR + +L+ P + + K I++ Y I K +
Sbjct: 191 QVALFSATMPSAIRRIAKTHLREPQEITI----QTKTTTAINIRQRYWIVGGGTSKLDAL 246
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ E IVF +TK+ D LA + A+ Y C L+GDI Q+QRERT++ ++G+
Sbjct: 247 TRLL-EAEPFDAMIVFARTKKSTDELAERLSARGYACAALNGDIVQAQRERTVAKLKNGQ 305
Query: 394 FNILIATDVAARGLDVPNVDLV 415
+I++ATDVAARGLDV + V
Sbjct: 306 LDIIVATDVAARGLDVERISHV 327
>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
Length = 525
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain-containing protein [Nitratifractor
salsuginis DSM 16511]
gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
DSM 16511]
Length = 462
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 181/312 (58%), Gaps = 12/312 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
D+ ++ + G + PIQK + ++GRD++G+A TGTGKT AFG+PILD+I
Sbjct: 6 FDLHPEVAKGVRIAGFKEPSPIQKEAIPIILEGRDLVGQAHTGTGKTAAFGLPILDRI-- 63
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYG 221
RG LV+ PTRELA QV E + + T+ VYGG Q+ + G
Sbjct: 64 -----ARGEIERALVITPTRELATQVSDELYHLGRFAGIRTLAVYGGVGYGRQIALIHRG 118
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V VV TPGR+ DL ++ +++ + VVLDEAD+ML +GF +DV I E +PQNRQ+++
Sbjct: 119 VQIVVATPGRLKDLYQKGKIDVFNPEVVVLDEADEMLDMGFLDDVREIFEYIPQNRQTLL 178
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I+ L + L P + +VG+ K D Y + +I+ L TE+
Sbjct: 179 FSATMPDPIKELADTLLYEPEFISVVGEETTKNVDIEQYYYVINENQRDEAIVRLLETEN 238
Query: 342 AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
K ++F + KR+ DRLA + A +N LHGDI Q +R+ + +FR G ILIAT
Sbjct: 239 YD--KALIFCRMKREVDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILIAT 296
Query: 401 DVAARGLDVPNV 412
DVAARGLD+ NV
Sbjct: 297 DVAARGLDIKNV 308
>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 589
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 190/316 (60%), Gaps = 13/316 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++++VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP I+ +T +YLK+P V + S A I + + K + +++
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIA--SKVSTASTIRQRYCQIAPHHKLEALTRIMEV 243
Query: 341 HAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
G I+F +TK LA + A+ Y+ EPL+GDI Q+ RERT+ + G+ +IL+A
Sbjct: 244 EVFDG-MIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVA 302
Query: 400 TDVAARGLDVPNVDLV 415
TDV ARGLDV V V
Sbjct: 303 TDVVARGLDVERVSHV 318
>gi|401682240|ref|ZP_10814134.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
gi|400184676|gb|EJO18914.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
Length = 523
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 198/319 (62%), Gaps = 16/319 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G ++ PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEVSPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ+++FSATMP I+ + K++K P V + + + + + Y I EK +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTELVDQYYIRVKENEKFDTM 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + + E +HGD+ Q +R R L F++G
Sbjct: 231 TRLM-DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGN 289
Query: 394 FNILIATDVAARGLDVPNV 412
++L+ATDVAARGLD+ V
Sbjct: 290 LDVLVATDVAARGLDISGV 308
>gi|163839948|ref|YP_001624353.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162953424|gb|ABY22939.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 565
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 194/327 (59%), Gaps = 17/327 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ ++ DIV ALA GI FPIQ L A+ G D+IG+A+TGTGKTL FG+P+L +
Sbjct: 38 FADFNVRADIVEALADAGIVHPFPIQSMTLPVALGGHDIIGQAKTGTGKTLGFGVPVLQR 97
Query: 161 IIKFNEKHGRGRN-------PLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPI 211
+ ++ G + P L++ PTRELA QV + +A +YGG
Sbjct: 98 VTAPKDE---GYDALPVPGAPQALIVVPTRELAVQVANDLQTAARKRGARITTIYGGRAF 154
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ +L GV+ VVGTPGR+IDL K+ LNL V+ VVLDEAD+ML +GF DVE ++
Sbjct: 155 EPQIESLTKGVEVVVGTPGRLIDLFKQRHLNLKNVRMVVLDEADEMLDLGFLPDVETLMA 214
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA--DGISLYSIATSMYE 329
P RQ+M+FSATMP I ++ +Y+ P + D+ L D L A SM +
Sbjct: 215 ATPAVRQTMLFSATMPGPIVAMARRYMTQPTHIRAADPDDEGLTKRDIRQLVYRAHSM-D 273
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSA 388
K ++ +++ + G+ I+FT+TKR A ++A +A + + +HGD+ Q RE+ L A
Sbjct: 274 KIEVVARILQARGR-GRTIIFTKTKRTAAKVAEELAERGFASAAIHGDLGQGAREQALRA 332
Query: 389 FRDGRFNILIATDVAARGLDVPNVDLV 415
FR+ + ++L+ATDVAARG+DV +V V
Sbjct: 333 FRNNKVDVLVATDVAARGIDVDDVTHV 359
>gi|138893877|ref|YP_001124330.1| DEAD/DEAH box helicase [Geobacillus thermodenitrificans NG80-2]
gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
thermodenitrificans NG80-2]
Length = 467
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 196/317 (61%), Gaps = 12/317 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +S++++ A+ R G + PIQ + ++Q +D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 5 QELGLSKEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ K+G + LV+APTRELA QV +E ++ + + + +YGG I Q+RAL
Sbjct: 65 ---DVKNGVIQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR+ID I R L L V+ VVLDEAD+ML++GF ED+E IL +P RQ+
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + +++ +P V + + + I Y + +K I+ +L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNDPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
A IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G IL+
Sbjct: 237 IQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILV 295
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARGLD+ V V
Sbjct: 296 ATDVAARGLDISGVTHV 312
>gi|15675334|ref|NP_269508.1| ATP-dependent RNA helicase [Streptococcus pyogenes SF370]
gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
gi|410680821|ref|YP_006933223.1| DEAD/DEAH box helicase [Streptococcus pyogenes A20]
gi|417856607|ref|ZP_12501666.1| ATP-dependent RNA helicase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|421892934|ref|ZP_16323529.1| Cold-shock DEAD-box protein A [Streptococcus pyogenes NS88.2]
gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
MGAS8232]
gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
gi|379981303|emb|CCG27251.1| Cold-shock DEAD-box protein A [Streptococcus pyogenes NS88.2]
gi|387933562|gb|EIK41675.1| ATP-dependent RNA helicase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|395454207|dbj|BAM30546.1| ATP-dependent RNA helicase [Streptococcus pyogenes M1 476]
gi|409693410|gb|AFV38270.1| DEAD/DEAH box helicase family protein [Streptococcus pyogenes A20]
Length = 539
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 202/318 (63%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K+P V + +++L + + Y + EK +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI---KNKELTNVNVDQYYVRVKEQEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D + + + + E +HGD+ Q++R R + F++ +
Sbjct: 232 RLMDVN-QPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|21910615|ref|NP_664883.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315]
gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
MGAS315]
gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
Length = 539
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 202/318 (63%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K+P V + +++L + + Y + EK +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI---KNKELTNVNVDQYYVRVKEQEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D + + + + E +HGD+ Q++R R + F++ +
Sbjct: 232 RLMDVN-QPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase [Mycobacterium gilvum Spyr1]
gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 561
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 192/320 (60%), Gaps = 12/320 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L I ++ A+A G PIQ A + ++G D++G A+TGTGKT AF IPIL
Sbjct: 13 LTFADLQIHPAVLKAVADVGYESPSPIQAATIPAMLEGSDVVGLAQTGTGKTAAFAIPIL 72
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMR 216
KI RN LVLAPTRELA QV + F L + + +YGG+ Q+
Sbjct: 73 SKI------DTESRNTQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLA 126
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G VVGTPGRVID +++ +L+LS + ++VLDEAD+ML +GFAEDVE IL P+
Sbjct: 127 GLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEY 186
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
+Q +FSATMPP I+ +T KYL +P+ V + S + A+ I+ S K + +
Sbjct: 187 KQVALFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAENITQRYFLVSYPRKMDALTR 244
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E +G IVF +TK+ + +A + A+ + ++GDI Q+ RERT++ +DG +
Sbjct: 245 LL-ETEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTID 303
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLDV + V
Sbjct: 304 ILVATDVAARGLDVERISHV 323
>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
Length = 523
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 198/322 (61%), Gaps = 16/322 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
+ RQ+++FSATMP I+ + K++K P V + + + + + Y I EK +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKIA--AKELTTELVDQYYIRVKENEKFDTM 230
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 393
+L+ + + IVF +TKR D L + + + E +HGD+ Q +R R L F++G
Sbjct: 231 TRLM-DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGN 289
Query: 394 FNILIATDVAARGLDVPNVDLV 415
++L+ATDVAARGLD+ V V
Sbjct: 290 LDVLVATDVAARGLDISGVTHV 311
>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
Length = 654
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 188/317 (59%), Gaps = 13/317 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ +++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 33 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 93 KVDLSQHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR 146
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R L L EV VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 147 ALKNGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET 206
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+NP +D+ G++ + + EK + +
Sbjct: 207 AQRVLFSATMPPIVKEIVDRFLRNPARIDVAGEN--RTVSKVEQQFWVVKGVEKDEAMSR 264
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E IVF +T++D +RLA + ++ + LHGDI QS RERT+ + G +
Sbjct: 265 LL-ETEDTDASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVID 323
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDV ARGLDVP +
Sbjct: 324 ILVATDVVARGLDVPRI 340
>gi|153938870|ref|YP_001392080.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384463072|ref|YP_005675667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 524
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 191/323 (59%), Gaps = 11/323 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L++++D++ A+ G IQ+ + ++G D+I +A+TGTGKTLAFG P
Sbjct: 2 ENKNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
++ + +K G LVL PTRELA Q++ E + T + VYGG I Q
Sbjct: 62 VISALCDKEKKKGVK----ALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQ 117
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + GVD VVGTPGRV+D I R L L + F++LDEAD+ML++GF ED+E I+E
Sbjct: 118 IKDIKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTS 177
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA-DGISLYSIATSMYEKPSI 333
+ +Q+M+FSATMP I+ L Y+K V+ + + L D I+ + A +K
Sbjct: 178 EEKQTMLFSATMPAPIKKLALNYMKKD--VEHIAIVKKSLTVDKIAQHYFAVKNKDKLEA 235
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
I ++I + + I+F +TKR D L AM +K YN E +HGD+SQ+QR TL F+
Sbjct: 236 ICRII-DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKA 294
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
N L+ATDVAARG+DV N+ V
Sbjct: 295 TLNFLVATDVAARGIDVENISHV 317
>gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
Length = 416
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 202/318 (63%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K+P V + +++L + + Y + EK +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI---KNKELTNVNVDQYYVRVKEQEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D + + + + E +HGD+ Q++R R + F++ +
Sbjct: 232 RLMDVN-QPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|373858358|ref|ZP_09601095.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372451825|gb|EHP25299.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 560
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/320 (40%), Positives = 192/320 (60%), Gaps = 13/320 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D + IS+ +V L G+ PIQ+ + M+G D+I +A+TGTGKT AF +PIL+
Sbjct: 3 DFLSMGISEMLVEKLQESGVVTPTPIQEQAIPYVMKGNDIIAQAQTGTGKTFAFILPILE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMR 216
+ + L++ PTRELA Q+ EF + P +D + VYGG + Q++
Sbjct: 63 HL------DPEASHVQALIVTPTRELALQITGEFKKLINDLPGIDVLAVYGGQDVDKQLK 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L V VV TPGR++D I+R +NLSE+ +VLDEADQML +GF +VE I+++ P +
Sbjct: 117 KLKKNVQIVVSTPGRLLDHIRRGTVNLSEISSLVLDEADQMLQIGFLNEVEEIIDQTPAS 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+M+FSATMPP IR+L K+++ P + + + Q A ++ +I T K + +
Sbjct: 177 RQTMLFSATMPPEIRTLARKHMREPKYIQV--EKTQGPAQTVNQLAIHTVDRAKQATLIG 234
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI H + ++F +TKR +L A+ + Y C+ LHGD+SQ++RE+ + FRD
Sbjct: 235 LIEAH-RPFLAVIFCRTKRRVSKLYEALRSHGYKCDELHGDLSQAKREQVMKRFRDAEVQ 293
Query: 396 ILIATDVAARGLDVPNVDLV 415
+LIATDVAARGLDV V V
Sbjct: 294 LLIATDVAARGLDVEGVTHV 313
>gi|417938107|ref|ZP_12581405.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
gi|343391197|gb|EGV03772.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
Length = 525
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium gilvum Spyr1]
gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 505
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 206/361 (57%), Gaps = 13/361 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + +IV ALA GI F IQ+ L A+ G D+IG+ARTG GKT AFG+P+L +
Sbjct: 12 FAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHR 71
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DT-----ICVYGGTPIS 212
I E+ G P LV+ PTREL QV ++ ++ L DT +YGG P
Sbjct: 72 ITTDTERPLTG-IPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYE 130
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GVD VVGTPGR++DL ++ L L + +VLDEAD+ML +GF D+E IL++
Sbjct: 131 PQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQ 190
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P RQ+M+FSATMP I +L ++ P + G D ++ +K
Sbjct: 191 IPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQFAYRAHALDKVE 250
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++ +++ +G ++FT+TKR A ++A + + + +HGD+ QS RE+ L FR+
Sbjct: 251 MVARILQAEGRGA-TMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRN 309
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDADL 449
G ++L+ATDVAARG+D+ ++ V + E ++ + R GK+ + ++D D
Sbjct: 310 GDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDE 369
Query: 450 L 450
L
Sbjct: 370 L 370
>gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
PYR-GCK]
Length = 505
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 206/361 (57%), Gaps = 13/361 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + +IV ALA GI F IQ+ L A+ G D+IG+ARTG GKT AFG+P+L +
Sbjct: 12 FAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHR 71
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DT-----ICVYGGTPIS 212
I E+ G P LV+ PTREL QV ++ ++ L DT +YGG P
Sbjct: 72 ITTDTERPLTG-IPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYE 130
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GVD VVGTPGR++DL ++ L L + +VLDEAD+ML +GF D+E IL++
Sbjct: 131 PQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQ 190
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P RQ+M+FSATMP I +L ++ P + G D ++ +K
Sbjct: 191 IPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQFAYRAHALDKVE 250
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++ +++ +G ++FT+TKR A ++A + + + +HGD+ QS RE+ L FR+
Sbjct: 251 MVARILQAEGRGA-TMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRN 309
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDADL 449
G ++L+ATDVAARG+D+ ++ V + E ++ + R GK+ + ++D D
Sbjct: 310 GDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDE 369
Query: 450 L 450
L
Sbjct: 370 L 370
>gi|383480233|ref|YP_005389127.1| RNA helicase SrmB [Streptococcus pyogenes MGAS15252]
gi|383494150|ref|YP_005411826.1| RNA helicase SrmB [Streptococcus pyogenes MGAS1882]
gi|378928223|gb|AFC66429.1| RNA helicase SrmB [Streptococcus pyogenes MGAS15252]
gi|378929877|gb|AFC68294.1| RNA helicase SrmB [Streptococcus pyogenes MGAS1882]
Length = 539
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 202/318 (63%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K+P V + +++L + + Y + EK +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI---KNKELTNVNVDQYYVRVKEQEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D + + + + E +HGD+ Q++R R + F++ +
Sbjct: 232 RLMDVN-QPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|431798400|ref|YP_007225304.1| DNA/RNA helicase [Echinicola vietnamensis DSM 17526]
gi|430789165|gb|AGA79294.1| DNA/RNA helicase, superfamily II [Echinicola vietnamensis DSM
17526]
Length = 567
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 202/344 (58%), Gaps = 24/344 (6%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L IS +I+ A+ G ++ IQ + ++G D+IG+A+TGTGKT +FGIPI+D++
Sbjct: 10 LGISAEILQAVEGMGYTQPSEIQAQSIPLMLEGHDVIGQAQTGTGKTASFGIPIVDRV-- 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
+ P L+L PTRELA QVE E + A + + +YGG I Q+R L
Sbjct: 68 ----DSSSKQPQALILCPTRELAVQVEGEITKLAKYKKGIFSTAIYGGEAIDRQIRTLKR 123
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRV+D + R L L V+ +VLDEAD+ML +GF ED+E +L ++P++RQ++
Sbjct: 124 GVQIVVGTPGRVMDHMNRGTLKLDTVKTIVLDEADEMLDMGFREDIETVLSQMPEDRQTI 183
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-----KPSIIG 335
FSATM I LT KY NP V + +++ +I+ YE K +I
Sbjct: 184 FFSATMAKPIMDLTRKYQTNPEIVKIQRKE-------LTVENISQVYYEVKPPLKMELIT 236
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+LI H + +VF TKR D + + A+ E LHGD+SQ+QR++ ++ FR G
Sbjct: 237 RLINIH-QFNLGVVFCNTKRATDEVTEGLIARGIMAEALHGDLSQAQRDKVMNKFRKGHC 295
Query: 395 NILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
+L+ATDVAARG+DV NV++V L E ++ +I R G++
Sbjct: 296 TVLVATDVAARGIDVDNVEVVFNYDLPLDE-EYYVHRIGRTGRA 338
>gi|417044094|ref|ZP_11948595.1| ATP-dependent RNA helicase, partial [Lactobacillus rhamnosus MTCC
5462]
gi|328478045|gb|EGF47932.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus MTCC 5462]
Length = 313
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 191/317 (60%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L + D++ A+A+ G + PIQ + ++G+D+IG+A+TGTGKT AFG+PIL
Sbjct: 1 MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
I K + R+ LV++PTRELA Q ++E + + VYGG I Q+R
Sbjct: 61 QHIDKAD------RSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R+ L L + +VLDEAD+ML +GF +D+E I+E++P
Sbjct: 115 QLADHPQIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I LTNK++K P+ V + + + AD + Y + YEK ++ +
Sbjct: 175 RQTLLFSATMPAAIMRLTNKFMKEPVIVKI--KAKELTADTVEQYYVRAKDYEKFDVMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L + ++F +TKR D L + A+ Y E +HGD++Q +R L F+ G+ +
Sbjct: 233 LF-DVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLD 291
Query: 396 ILIATDVAARGLDVPNV 412
L+ATDVAARGLD+ V
Sbjct: 292 FLVATDVAARGLDISGV 308
>gi|417923705|ref|ZP_12567162.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
gi|342836587|gb|EGU70798.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
Length = 525
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y + EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--TKELTTELVDQYYLRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
PB013-T2-3]
gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
PB013-T2-3]
Length = 498
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 197/320 (61%), Gaps = 12/320 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +SQ ++ A+ R G + PIQ+ + ++G+D+IG+A+TGTGKT AFG+PI+
Sbjct: 1 MKFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ + N N L+++PTRELA Q ++E + + VYGG I Q++
Sbjct: 61 EHVDTDNP------NIQALIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+L + +VGTPGR+ D I R+ + L +Q +VLDEAD+ML++GF ED+E I++ P
Sbjct: 115 SLKHHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMPP I+ + +++ NP TV + + + D + Y + YEK I+ +
Sbjct: 175 RQTLLFSATMPPEIKRIGEQFMTNPETVRI--KAKELTTDLVDQYYVRARDYEKFDIMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI + IVF +TKR D L+ + A+ YN +HGD++Q +R + + F++G +
Sbjct: 233 LI-DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKNGDLD 291
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 292 ILVATDVAARGLDISGVTHV 311
>gi|441503307|ref|ZP_20985314.1| Cold-shock DEAD-box protein A [Photobacterium sp. AK15]
gi|441429523|gb|ELR66978.1| Cold-shock DEAD-box protein A [Photobacterium sp. AK15]
Length = 625
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 194/317 (61%), Gaps = 13/317 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ I++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLDLADTILSALDTMGFVSPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 67 KLDLGQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 121 ALKSGAHIVVGTPGRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L++P +D+ G+ ++ ++ + + + + +++
Sbjct: 181 AQRVLFSATMPPMVKEIVDRFLRDPARIDVAGE-NRTVSQVEQQFWVVKGVEKDEAMMRL 239
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L TE IVF +T++D +RLA + A+ + LHGDI QS RERT+ + G +
Sbjct: 240 LETEGTDA--SIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVID 297
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDV ARGLDVP +
Sbjct: 298 ILVATDVVARGLDVPRI 314
>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
Length = 452
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/362 (36%), Positives = 201/362 (55%), Gaps = 12/362 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + +IV ALA +GI F IQ+ L A+ G D+IG+ARTG GKT AFG+P+L +
Sbjct: 12 FAQLGVRDEIVRALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--------DTICVYGGTPIS 212
I P L++ PTREL QV + +A L + +YGG P
Sbjct: 72 ITSGTAARPLNGTPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYE 131
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL G D VVGTPGR++DL ++ L L + +VLDEAD+ML +GF D+E IL +
Sbjct: 132 AQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 191
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332
+P +RQSM+FSATMP I +L ++ P + D Y+ +K
Sbjct: 192 IPVDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYAYRAHALDKVE 251
Query: 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRD 391
++ +++ +G ++FT+TKR A ++A +A + + +HGD+ Q RE+ L AFR
Sbjct: 252 LVSRILQAEGRGA-TMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRT 310
Query: 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLS--TQISRPGKSRVLSEMLDADL 449
G ++L+ATDVAARG+D+ +V V + E ++ + R GK+ V ++D D
Sbjct: 311 GDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDE 370
Query: 450 LS 451
L+
Sbjct: 371 LT 372
>gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
Length = 539
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 202/318 (63%), Gaps = 14/318 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIG 335
RQ+++FSATMP I+ + K++K+P V + +++L + + Y + EK +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI---KNKELTNVNVDQYYVRVKEQEKFDTMT 231
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 394
+L+ + + IVF +TKR D + + + + E +HGD+ Q++R R + F++ +
Sbjct: 232 RLMDVN-QPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQI 290
Query: 395 NILIATDVAARGLDVPNV 412
+IL+ATDVAARGLD+ V
Sbjct: 291 DILVATDVAARGLDISGV 308
>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia R551-3]
gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 646
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 194/321 (60%), Gaps = 13/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P LVLAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPA 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 183 KRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALT- 240
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 241 -RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 299
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLDV + V
Sbjct: 300 DILVATDVAARGLDVERISHV 320
>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 627
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 190/317 (59%), Gaps = 13/317 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ +++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 67 KVNLSQHK------PQAIVMAPTRELAIQVAAEMKTLGQNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R L+L EV VLDEAD+ML +GF +DV I+E+ P++
Sbjct: 121 ALKNGAHIVVGTPGRVKDLISRKQLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPES 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
Q ++FSATMPP ++ + +++L+NP +D+ G++ + + EK + +
Sbjct: 181 AQRVLFSATMPPIVKEIVDRFLRNPERIDVAGEN--RTVSKVEQQFWVVKGVEKDEAMSR 238
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ E IVF +T++D +RLA + ++ + LHGDI QS RERT+ + G +
Sbjct: 239 LL-ETEDTDASIVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVID 297
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDV ARGLDVP +
Sbjct: 298 ILVATDVVARGLDVPRI 314
>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
Length = 471
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/320 (40%), Positives = 195/320 (60%), Gaps = 12/320 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ +S +++ A+++ G + PIQ A + ++Q RD+IG+A+TGTGKT AFGIP++
Sbjct: 5 VKFNEFGLSPELMKAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFGIPLI 64
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N+ +V+APTRELA QV +E ++ S + + +YGG I Q+R
Sbjct: 65 EKIDMNNDAVQ------AIVVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIERQIR 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL +VGTPGR++D I+R L L V VVLDEAD+ML++GF ED+E IL +P
Sbjct: 119 ALKKHPHIIVGTPGRILDHIQRRTLRLQHVHTVVLDEADEMLNMGFVEDIEAILSHVPTE 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP IR + +++ NP V + + + I Y I +K + +
Sbjct: 179 RQTLLFSATMPEPIRRIAERFMNNPELVRV--KAKEMTVPNIEQYYIEIQEKKKFDTLTR 236
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G +
Sbjct: 237 LLDIQSP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSID 295
Query: 396 ILIATDVAARGLDVPNVDLV 415
IL+ATDVAARGLD+ V V
Sbjct: 296 ILVATDVAARGLDISGVTHV 315
>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
Length = 506
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 195/317 (61%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L + +D++ A+ R G + PIQ+A + + G D+IG+A+TGTGKT AFG+PIL
Sbjct: 10 LKFNELGLEEDLLKAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPIL 69
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+ E+H + +V++PTRELA Q ++E + VYGG I Q++
Sbjct: 70 QHV-DVKEEHIQ-----AIVVSPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIK 123
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L + +VGTPGR++D I R ++LS V+ +VLDEAD+ML +GF ED+E I++ +P+
Sbjct: 124 LLKHVPQILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEE 183
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP IRS+ K++ P V + + + D + Y + YEK I+ +
Sbjct: 184 RQTLLFSATMPKAIRSIGEKFMHEPQVVKI--KAKELTTDLVDQYFVKAREYEKFDIMTR 241
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
++ A IVF +TKR D L+ + A+ YN +HGD++Q +R L F++GR +
Sbjct: 242 ILDVQAP-ELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLD 300
Query: 396 ILIATDVAARGLDVPNV 412
IL+ATDVAARGLD+ V
Sbjct: 301 ILVATDVAARGLDISGV 317
>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
Length = 648
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 195/321 (60%), Gaps = 13/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALT- 240
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 241 -RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 299
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLDV + V
Sbjct: 300 DILVATDVAARGLDVERISHV 320
>gi|408824960|ref|ZP_11209850.1| DEAD/DEAH box helicase [Pseudomonas geniculata N1]
Length = 648
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 195/321 (60%), Gaps = 13/321 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ +FSATMPP IR + YL++P+ V + + A+ Y + M++ ++
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTS-ANIRQRYWWVSGMHKLDALT- 240
Query: 336 QLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRF 394
I E I+F +TK + LA + A+ ++GD+ Q+QRERT++ ++G+
Sbjct: 241 -RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKL 299
Query: 395 NILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLDV + V
Sbjct: 300 DILVATDVAARGLDVERISHV 320
>gi|289428099|ref|ZP_06429802.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
J165]
gi|422385858|ref|ZP_16465983.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3]
gi|422488324|ref|ZP_16564653.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|422490424|ref|ZP_16566739.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|422498196|ref|ZP_16574468.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|422505958|ref|ZP_16582181.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|422551928|ref|ZP_16627719.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|422568340|ref|ZP_16643958.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|289158699|gb|EFD06900.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
J165]
gi|313822547|gb|EFS60261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|314960461|gb|EFT04563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|314989611|gb|EFT33702.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|315085333|gb|EFT57309.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|327327119|gb|EGE68898.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3]
gi|327443743|gb|EGE90397.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|328754844|gb|EGF68460.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
Length = 560
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 189/323 (58%), Gaps = 10/323 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS + VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333
P +RQ+M+FSATMP I +L L+ P+ V G Q + +K I
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEI 289
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
IG+++ + K I+F +TKR RL+ + + + +HGD++Q RE+ L FR G
Sbjct: 290 IGRILQAN-DVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
IL+ATDVAARG+DV V V
Sbjct: 349 EATILVATDVAARGIDVTGVSHV 371
>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
700641]
gi|417918982|ref|ZP_12562526.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
700641]
gi|342835133|gb|EGU69390.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
Length = 524
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 198/317 (62%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|414158100|ref|ZP_11414394.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
gi|410870645|gb|EKS18602.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
Length = 525
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 201/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEATIQ-----ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + + IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>gi|409386471|ref|ZP_11238869.1| Cold-shock DEAD-box protein A [Lactococcus raffinolactis 4877]
gi|399206265|emb|CCK19784.1| Cold-shock DEAD-box protein A [Lactococcus raffinolactis 4877]
Length = 517
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 199/317 (62%), Gaps = 13/317 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S+DI++A+ + G PIQ+ + A+ G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELGLSEDILSAIVKAGYETPTPIQEQTIMLALDGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI + +G +V+APTRELA Q ++E + V+GG I Q++
Sbjct: 61 NKI----DVNG---GLQAIVIAPTRELAVQSQEELFRFGRDKGIKVRSVFGGASIDKQIK 113
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF +D+E I++ P
Sbjct: 114 ALKSGAHVVVGTPGRMVDLIKRRALQLGDIETLILDEADEMLNMGFIDDLEFIIKATPAE 173
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + K++K+P V +V S + +D I Y + T +EK ++ +
Sbjct: 174 RQTLLFSATMPDAIKKIGVKFMKDPQHVKIV--SKEMTSDLIDQYYVKTKEFEKFDVLTR 231
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
LI + K IVF +TKR D + + Y E +HGD++Q +R L F++ +
Sbjct: 232 LI-DVQKPELAIVFGRTKRRVDEITRGLKLLGYRAEGIHGDLAQQKRLAVLRDFKNDNLD 290
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 291 VLVATDVAARGLDISGV 307
>gi|345860075|ref|ZP_08812402.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
gi|344326819|gb|EGW38270.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
Length = 536
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 192/322 (59%), Gaps = 31/322 (9%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +S+ I+ AL+ G + PIQK + A++ D+IG+A+TGTGKT AF IPI +K+
Sbjct: 12 IKLSKQILQALSEMGFEEPSPIQKEAIPYALEAVDLIGQAQTGTGKTAAFSIPIAEKV-- 69
Query: 164 FNEKHGRGRNPLCL-----VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
NP L ++ PTRELA QV +E + + + +YGG PI Q+R
Sbjct: 70 ---------NPKFLAVQAIIVTPTRELAIQVSEEIAKIGKYRHVKPLPIYGGQPIDRQIR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
AL G VVGTPGR++D + R L L + VVLDEAD+ML +GF ED+E IL+ +P +
Sbjct: 121 ALRMGYQVVVGTPGRLLDHLNRGTLRLQHAKIVVLDEADEMLDMGFIEDIEAILKDVPSE 180
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSI- 333
RQ M+FSATMPP IR L Y+ NP V + D +++ I YE + SI
Sbjct: 181 GRQIMLFSATMPPAIRKLAQTYMNNPRAVTVSRDE-------LTVPLIDQVFYEARESIK 233
Query: 334 IGQL--ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFR 390
+ L I + G+ I+F +TKR D L A+ A+ Y + LHGD+SQ QR+R + FR
Sbjct: 234 VDALCRIIDIEDIGQGIIFCRTKRGVDELVAALEARGYFADGLHGDLSQQQRDRVMKRFR 293
Query: 391 DGRFNILIATDVAARGLDVPNV 412
DG+ +L+ATDVAARGLD+ NV
Sbjct: 294 DGKSELLVATDVAARGLDINNV 315
>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
Length = 497
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 193/328 (58%), Gaps = 32/328 (9%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+L +S++I+ A+A G + PIQK + AMQG+D+IG+A+TGTGKT AFGIPIL +
Sbjct: 11 FKELGLSEEIMKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGIPILQR 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRAL 218
I K G P +VL+PTRELA Q +E + A ++ TI +YGG I Q RAL
Sbjct: 71 ID--TSKPG----PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRAL 124
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ +V TPGR++D +KR ++LS VQ VLDE D+M+ +GF +D+ I+ P+ RQ
Sbjct: 125 KKKTNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQ 184
Query: 279 SMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSM-Y 328
++ FSATMP IR L N +L P +T+DL+ +L D ++ +
Sbjct: 185 TLFFSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLLDM 244
Query: 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLS 387
+ P + IVF +TKR AD + A+ K +Y+ E LHGD+SQ +R+ +
Sbjct: 245 QSPEL-------------AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIR 291
Query: 388 AFRDGRFNILIATDVAARGLDVPNVDLV 415
F++G + L+ATDVAARGLD+ V V
Sbjct: 292 QFKEGTIDFLVATDVAARGLDISGVTHV 319
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,986,644,816
Number of Sequences: 23463169
Number of extensions: 287448816
Number of successful extensions: 889574
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 31369
Number of HSP's successfully gapped in prelim test: 10531
Number of HSP's that attempted gapping in prelim test: 763271
Number of HSP's gapped (non-prelim): 49893
length of query: 475
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 329
effective length of database: 8,933,572,693
effective search space: 2939145415997
effective search space used: 2939145415997
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)