BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011908
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 586 bits (1510), Expect = e-166, Method: Compositional matrix adjust.
Identities = 295/426 (69%), Positives = 338/426 (79%), Gaps = 18/426 (4%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDI-------IKSR 54
M + +L+RS SKR L+A+LTS+ T+L +LA P R D+ +K+
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLA-----PAATRVSDLALIGSSDVKAG 54
Query: 55 FSAGT--REFHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEGLDISKLDISQD 109
F G + H S PLDF++S+ Q + + V +S +GL IS+L IS +
Sbjct: 55 FPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPE 114
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
IV AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHG
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGRNPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTP
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTP 234
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP W
Sbjct: 235 GRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSW 294
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIV 349
IRSLT KYL NPLTVDLVGDSDQKLADGI+ YSI Y + SIIG L+TEHAKGGKCIV
Sbjct: 295 IRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIV 354
Query: 350 FTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409
FTQTKRDADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FNIL+ATDVAARGLDV
Sbjct: 355 FTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDV 414
Query: 410 PNVDLV 415
PNVDL+
Sbjct: 415 PNVDLI 420
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana
GN=RH9 PE=2 SV=1
Length = 610
Score = 567 bits (1460), Expect = e-161, Method: Compositional matrix adjust.
Identities = 287/433 (66%), Positives = 329/433 (75%), Gaps = 20/433 (4%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKS-------GPVIPRHDDIIKSR 54
M S +L+RS TS+R L A++TS+ L +LA A + G + S
Sbjct: 1 MISTVLRRSI-LGTSRRTLAASVTSINAALFHNLAPAAATVSDLANGATNVKSLPSNSSP 59
Query: 55 FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSS------------KDEGLDIS 102
F R+FH S P +F+SSI +A + +Y++ +GL I+
Sbjct: 60 FGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLAIA 119
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
L IS +IV AL RGI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKII
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
KFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR L+YG+
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGI 239
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP RQSMMF
Sbjct: 240 DVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMF 299
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342
SATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA Y + SIIG L+ EH
Sbjct: 300 SATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHG 359
Query: 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
KGGKCIVFTQTKRDADRLA +AKSY CE LHGDISQ+QRERTL+ FRDG F+IL+ATDV
Sbjct: 360 KGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 403 AARGLDVPNVDLV 415
AARGLDVPNVDLV
Sbjct: 420 AARGLDVPNVDLV 432
>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp.
japonica GN=Os07g0143700 PE=2 SV=2
Length = 602
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 271/429 (63%), Positives = 325/429 (75%), Gaps = 28/429 (6%)
Query: 29 TILHSHLAAAKSGPVIPRHDDIIKSRFSAGT-----------------REFHAISRPLDF 71
++L L AA S P PR ++ + S R FH PL F
Sbjct: 3 SLLSRALCAASSSPAAPRGRSLLAALLSPSASPLDPCRGPAAPEPPRRRAFHGSPSPLGF 62
Query: 72 KSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+S+ A W ++ V DD GL++++L IS IV LA RGI++LFPIQ+AVL
Sbjct: 63 RSTPASWSSPEAGA--AVGGDD-----GLEVARLGISPWIVERLAARGITRLFPIQRAVL 115
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
+PAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++LAPTRELA+QVE
Sbjct: 116 DPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVE 175
Query: 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
KEF ESAP LD++CVYGG PISHQMRAL+YGVD VVGTPGR+IDL++R LNLSE+QFVV
Sbjct: 176 KEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVV 234
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
LDEADQML+VGF EDVEVI+E LPQNRQSM+FSATMP WIR +T+KYLK+P+ +DLVGD
Sbjct: 235 LDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDE 294
Query: 311 DQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNC 370
DQKL +GISLYSIA+ Y KPSI+G LI EHA GGKCIVFTQTKR+ADRLA+AM +SY C
Sbjct: 295 DQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYAC 354
Query: 371 EPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL-- 428
+ LHGDISQ+QRERTLS FRDGRFNIL+ATDVAARGLD+PNVDLV L F+
Sbjct: 355 QALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHR 414
Query: 429 STQISRPGK 437
S + +R GK
Sbjct: 415 SGRTARAGK 423
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/369 (65%), Positives = 299/369 (81%), Gaps = 16/369 (4%)
Query: 62 FHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEG------------LDISKLDI 106
FH+ L F+ + A A Q A D+ + Y++ + L+++KL I
Sbjct: 46 FHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGGAEEGLEVAKLGI 105
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPILD II+ NE
Sbjct: 106 SPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
K+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+
Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVI 224
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ++MFSATM
Sbjct: 225 GTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATM 284
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK 346
P WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+ + KP+++G+LI EHAKGGK
Sbjct: 285 PTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGK 344
Query: 347 CIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406
CIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL FR+G FNILIATDVAARG
Sbjct: 345 CIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARG 404
Query: 407 LDVPNVDLV 415
LD+PNVDLV
Sbjct: 405 LDIPNVDLV 413
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis
thaliana GN=RH3 PE=1 SV=2
Length = 748
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/349 (59%), Positives = 257/349 (73%), Gaps = 4/349 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK 366
VGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373
Query: 367 SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
S E LHGDISQ QRERTL+AFR G+F +L+ATDVA+RGLD+PNVDLV
Sbjct: 374 SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLV 422
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
Length = 758
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/344 (58%), Positives = 258/344 (75%), Gaps = 4/344 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFGIP++
Sbjct: 104 LAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMI 163
Query: 159 DKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q
Sbjct: 164 KQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQN 223
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++LP
Sbjct: 224 ALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAE 283
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K +++
Sbjct: 284 RQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSD 343
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+F +
Sbjct: 344 LITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTV 403
Query: 397 LIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS 438
L+ATDVAARGLD+PNVDL+ L F+ S + R GK+
Sbjct: 404 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKA 447
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1
Length = 734
Score = 275 bits (702), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 375
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 376 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 436 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 476
>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1
Length = 737
Score = 275 bits (702), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 11/345 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVI 378
Query: 335 GQLITEHAKG-GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G
Sbjct: 379 GDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438
F +L+AT+VAARGLD+P VDL V++ Q + + I R G++
Sbjct: 439 FKVLVATNVAARGLDIPEVDL----VIQSSPPQDVESYIHRSGRT 479
>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1
Length = 782
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 184 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 244 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 364 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 423
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 424 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 483
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 484 FGVLVATNVAARGLDIPEVDLV 505
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3
Length = 851
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++I
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVI 499
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G
Sbjct: 500 GDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGN 559
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 560 FGVLVATNVAARGLDIPEVDLV 581
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 271 bits (693), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 7/322 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKPSII 334
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++I
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVI 427
Query: 335 GQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 393
G +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G
Sbjct: 428 GDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGS 487
Query: 394 FNILIATDVAARGLDVPNVDLV 415
F +L+AT+VAARGLD+P VDLV
Sbjct: 488 FGVLVATNVAARGLDIPEVDLV 509
>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp.
japonica GN=Os09g0520700 PE=2 SV=1
Length = 696
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 206/324 (63%), Gaps = 12/324 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 117 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 176
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 177 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 236
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 237 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 296
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKP 331
Q+++FSAT+P W++ L+ ++LK+ TVDLVGD K + + ++ + +
Sbjct: 297 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARA 356
Query: 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391
+I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR
Sbjct: 357 QVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRS 413
Query: 392 GRFNILIATDVAARGLDVPNVDLV 415
G+F +L+AT+VAARGLD+ +V L+
Sbjct: 414 GKFLVLVATNVAARGLDINDVQLI 437
>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7
PE=2 SV=1
Length = 685
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 203/326 (62%), Gaps = 16/326 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 109 LSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVES 168
Query: 161 IIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K G GR P LVL PTRELA QV +F + A L VYGG P Q
Sbjct: 169 LVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQ 228
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ +L GVD VVGTPGRV DL+++ L L + F VLDEAD+ML +GF +DVE+IL ++
Sbjct: 229 ISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVD 288
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSIA--TSMYE 329
Q+++FSAT+P W++ ++ ++LK+ TVDLV SDQK+ IS+ I S
Sbjct: 289 HVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLV--SDQKMKASISVRHIVIPCSASA 346
Query: 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAF 389
+P +I +I + GG+ I+FT+TK A +LA + PLHGDI Q+QRE TL F
Sbjct: 347 RPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPLHGDIQQTQREVTLKGF 403
Query: 390 RDGRFNILIATDVAARGLDVPNVDLV 415
R G+F L+AT+VAARGLD+ +V L+
Sbjct: 404 RTGKFMTLVATNVAARGLDINDVQLI 429
>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana
GN=RH7 PE=1 SV=2
Length = 671
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 210/337 (62%), Gaps = 12/337 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +SK IS + L GI LFPIQ + + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +G
Sbjct: 205 SCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
Query: 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDIS 378
+I + +I +I+ ++ GG+ I+F +TK L+ + S LHG+I
Sbjct: 325 RHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIP 381
Query: 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
QSQRE TL+ FR+G+F L+AT+VAARGLD+ +V L+
Sbjct: 382 QSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLI 418
>sp|P0A4D8|EXP9_STRR6 Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1
Length = 524
Score = 235 bits (600), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>sp|P0A4D7|EXP9_STRPN Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=exp9 PE=3 SV=1
Length = 524
Score = 235 bits (600), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 200/317 (63%), Gaps = 12/317 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336
RQ+++FSATMP I+ + +++K P V + + + + + Y I EK + +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTR 232
Query: 337 LITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFN 395
L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G +
Sbjct: 233 LM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
Query: 396 ILIATDVAARGLDVPNV 412
+L+ATDVAARGLD+ V
Sbjct: 292 VLVATDVAARGLDISGV 308
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 231 bits (589), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 193/317 (60%), Gaps = 12/317 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +SQ+++ A+ R G + PIQ + ++Q +D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 5 QELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
N K+ + LV+APTRELA QV +E ++ + + + +YGG I Q+RAL
Sbjct: 65 ---NVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR+ID I R L L V VVLDEAD+ML++GF ED+E IL +P RQ+
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT 339
++FSATMP IR + +++ P V + + + I Y + +K I+ +L+
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVPNIQQYYLEVHEKKKFDILTRLLD 236
Query: 340 EHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398
A IVF +TKR D LA A+ + Y E +HGD+SQ++R L F++G IL+
Sbjct: 237 IQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 399 ATDVAARGLDVPNVDLV 415
ATDVAARGLD+ V V
Sbjct: 296 ATDVAARGLDISGVTHV 312
>sp|Q2FWH5|Y2316_STAA8 Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316
OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_02316 PE=3 SV=1
Length = 506
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 198/323 (61%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ NIL+ATDVAARGLD+ V V
Sbjct: 290 QINILVATDVAARGLDISGVSHV 312
>sp|Q6GEZ3|Y2168_STAAR Probable DEAD-box ATP-dependent RNA helicase SAR2168
OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168
PE=3 SV=1
Length = 506
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 198/323 (61%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ NIL+ATDVAARGLD+ V V
Sbjct: 290 QINILVATDVAARGLDISGVSHV 312
>sp|Q99SH6|Y2081_STAAM Probable DEAD-box ATP-dependent RNA helicase SAV2081
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=SAV2081 PE=3 SV=1
Length = 506
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 198/323 (61%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ NIL+ATDVAARGLD+ V V
Sbjct: 290 QINILVATDVAARGLDISGVSHV 312
>sp|Q5HEB9|Y2072_STAAC Probable DEAD-box ATP-dependent RNA helicase SACOL2072
OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3
SV=1
Length = 506
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 198/323 (61%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ NIL+ATDVAARGLD+ V V
Sbjct: 290 QINILVATDVAARGLDISGVSHV 312
>sp|Q2FF45|Y2037_STAA3 Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037
OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_2037 PE=3 SV=1
Length = 506
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 198/323 (61%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ NIL+ATDVAARGLD+ V V
Sbjct: 290 QINILVATDVAARGLDISGVSHV 312
>sp|Q7A0D2|Y2004_STAAW Probable DEAD-box ATP-dependent RNA helicase MW2004
OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3
SV=1
Length = 506
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 198/323 (61%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ NIL+ATDVAARGLD+ V V
Sbjct: 290 QINILVATDVAARGLDISGVSHV 312
>sp|Q6G7M9|Y1985_STAAS Probable DEAD-box ATP-dependent RNA helicase SAS1985
OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985
PE=3 SV=1
Length = 506
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 198/323 (61%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ NIL+ATDVAARGLD+ V V
Sbjct: 290 QINILVATDVAARGLDISGVSHV 312
>sp|Q7A4G0|Y1885_STAAN Probable DEAD-box ATP-dependent RNA helicase SA1885
OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1
SV=1
Length = 506
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 198/323 (61%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ NIL+ATDVAARGLD+ V V
Sbjct: 290 QINILVATDVAARGLDISGVSHV 312
>sp|Q2YUH3|Y1965_STAAB Probable DEAD-box ATP-dependent RNA helicase SAB1965c
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=SAB1965c PE=3 SV=1
Length = 506
Score = 225 bits (574), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 197/322 (61%), Gaps = 18/322 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + V+GG PI Q++A
Sbjct: 63 KVV---WKQG----VQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P + + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLV 415
NIL+ATDVAARGLD+ V V
Sbjct: 291 INILVATDVAARGLDISGVSHV 312
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp.
japonica GN=Os01g0172200 PE=2 SV=1
Length = 708
Score = 225 bits (573), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 197/313 (62%), Gaps = 12/313 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP--ILDKIIKFNE 166
+I+ + + G S PIQ A++ RD++ A+TG+GKTL + IP IL K ++ N
Sbjct: 190 EILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNS 249
Query: 167 KHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ G P LVL+PTRELA Q++ K+F S+ + ++C+YGG P Q+R L+ G D
Sbjct: 250 RDG----PTVLVLSPTRELATQIQDEAKKFGRSS-RISSVCLYGGAPKGPQLRDLERGAD 304
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VV TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I++++ RQ++MF+
Sbjct: 305 IVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFT 364
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLYSIATSMYEKPSIIGQLITEHA 342
AT P +R + + L NP+ V+ +G++DQ +A+ I+ Y + EK + Q++
Sbjct: 365 ATWPKEVRKIASDLLSNPVQVN-IGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQE 423
Query: 343 KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402
G K I+F TKR D+LA +A+ Y +HGD SQ++R+ LS FR GR IL+ATDV
Sbjct: 424 PGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDV 483
Query: 403 AARGLDVPNVDLV 415
AARGLD+ ++ +V
Sbjct: 484 AARGLDIKDIRVV 496
>sp|Q49Z29|Y802_STAS1 Probable DEAD-box ATP-dependent RNA helicase SSP0802
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1
Length = 506
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 202/322 (62%), Gaps = 18/322 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + L G ++ PIQK + A++G+D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRA 217
K+ ++ G L+LAPTRELA QV + A ++ + V+GG PI Q++A
Sbjct: 63 KVA---DQEG----VQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QN 276
L G VVGTPGRVID + R L +++ ++LDEAD+M+++GF +D++ I++++P +
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSII 334
RQ+M+FSATMP I++L +++K+P+ V + + SD ++ + Y+I + EK
Sbjct: 176 RQTMLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEE---YYTIVKEL-EKFDTF 231
Query: 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 393
+ H + IVF +TKR D L A+ +K Y E LHGDI+Q++R L F++ +
Sbjct: 232 TSFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQ 290
Query: 394 FNILIATDVAARGLDVPNVDLV 415
+IL+ATDVAARGLD+ V V
Sbjct: 291 LDILVATDVAARGLDISGVSHV 312
>sp|Q4L7W0|Y956_STAHJ Probable DEAD-box ATP-dependent RNA helicase SH0956
OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH0956 PE=3 SV=1
Length = 503
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 200/323 (61%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + ++G+D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G++ + L+LAPTRELA QV ++ E ++ + V+GG PI Q++
Sbjct: 63 KVV--------GQSGVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
AL G VVGTPGRVID + R L + + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 ALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I++L +++K+P V + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDE---YYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A ++K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ +IL+ATDVAARGLD+ V V
Sbjct: 290 QIDILVATDVAARGLDISGVSHV 312
>sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana
GN=RH5 PE=1 SV=1
Length = 537
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 188/303 (62%), Gaps = 14/303 (4%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR---NPLCLVLA 180
PIQ + GRD+IG A+TG+GKTLAFGIP + ++K N+K G G NP CLVL+
Sbjct: 139 PIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLS 198
Query: 181 PTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
PTRELA Q+ E+ L +ICVYGG+ Q+ A+ GVD V+GTPGR+ DLI+
Sbjct: 199 PTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIES 258
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
N L LS+V FVVLDEAD+ML +GF E V IL + RQ +MFSAT P + L +++
Sbjct: 259 NVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFM 318
Query: 299 K-NPLTVDLVGDSDQKLADGISLYSIATSMYEKP---SIIGQLITEH-AKGGKCIVFTQT 353
NP+ V ++G D LA + I + E+ +I L H ++ + +VF
Sbjct: 319 DPNPIKV-IIGSVD--LAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALY 375
Query: 354 KRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412
K +A+RL + + + +HG+ +QS+R R+LS F++G +L+ATDVAARGLD+P+V
Sbjct: 376 KVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDV 435
Query: 413 DLV 415
++V
Sbjct: 436 EVV 438
>sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides immitis (strain RS)
GN=DBP3 PE=3 SV=2
Length = 515
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/354 (38%), Positives = 202/354 (57%), Gaps = 23/354 (6%)
Query: 81 QSAVDDYVAYD-----DSSKDEGL-DISKLDI----SQDIVAALARRGISKLFPIQKAVL 130
QS +D+Y++ + D S D L I+ S D+ L + S PIQ
Sbjct: 73 QSTIDEYLSSNSIHIADPSTDPSLRPITSFSFLPESSNDLYLPLEK--FSSPTPIQAVSW 130
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
A GRD+IG A TG+GKTLAFG+P L ++++ N + P L++ PTRELA Q+
Sbjct: 131 PLAFAGRDLIGVAETGSGKTLAFGLPCLRRVLELNNSETSCK-PCALIITPTRELAVQIY 189
Query: 191 KEF--HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
+ SA + C+YGG+P HQ R + V+ TPGR+ D +NLS V++
Sbjct: 190 DQLLRFSSAVDVGIACIYGGSPKDHQRREI-RNASVVIATPGRLKDFQADQTINLSGVKY 248
Query: 249 VVLDEADQMLSVGFAEDVEVILERLP--QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+VLDEAD+ML GF +D++ I++ +P Q RQ++MF+AT P +R+L + KNP+TV +
Sbjct: 249 LVLDEADRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTI 308
Query: 307 VGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGK----CIVFTQTKRDADRLAH 362
SD + I YEK S + +L+ + GGK +VF K++A R+
Sbjct: 309 GDSSDIRANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVFCLYKKEAMRVER 368
Query: 363 AM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+ +K + +HGD+SQ++R R+L AF+ G ++L+ATDVAARGLD+P V LV
Sbjct: 369 FIGSKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLV 422
>sp|Q5HME0|Y1688_STAEQ Probable DEAD-box ATP-dependent RNA helicase SERP1688
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=SERP1688 PE=3 SV=1
Length = 509
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 195/323 (60%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + A++G D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 ALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I+ L +++K P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDE---YYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A ++K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ +IL+ATDVAARGLD+ V V
Sbjct: 290 QIDILVATDVAARGLDISGVSHV 312
>sp|P33906|DEAD_KLEPN Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3
SV=3
Length = 643
Score = 218 bits (556), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 188/319 (58%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L+
Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
I R P LVLAPTRELA QV + EF + ++ + +YGG Q+RA
Sbjct: 68 I------DPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR +T +++K P V + S D Y A M + +++ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTAYGMRKNEALVRFL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+ L +DGR +I
Sbjct: 241 EAEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARGLDV + LV
Sbjct: 299 LIATDVAARGLDVERISLV 317
>sp|Q8CRP6|Y1679_STAES Probable DEAD-box ATP-dependent RNA helicase SE_1679
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=SE_1679 PE=3 SV=1
Length = 509
Score = 218 bits (556), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 126/323 (39%), Positives = 194/323 (60%), Gaps = 20/323 (6%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + A++G D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 VLKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGISLYSIATSMYEKPSI 333
RQ+M+FSATMP I+ L +++K P + + + SD ++ + Y+I + EK
Sbjct: 175 QRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDE---YYTIVKEL-EKFDT 230
Query: 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDG 392
+ H + IVF +TKR D L A ++K Y E LHGDI+Q++R L F++
Sbjct: 231 FTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKND 289
Query: 393 RFNILIATDVAARGLDVPNVDLV 415
+ +IL+ATDVAARGLD+ V V
Sbjct: 290 QIDILVATDVAARGLDISGVSHV 312
>sp|Q11039|DEAD_MYCTU Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis
GN=deaD PE=3 SV=1
Length = 563
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 188/319 (58%), Gaps = 15/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L I ++ A+ G IQ A + M G D++G A+TGTGKT AF IP+L K
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRA 217
I + + P LVL PTRELA QV + F L+ + +YGG+ + Q+
Sbjct: 75 IDITS------KVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR+ID ++R L+LS V F+VLDEAD+ML++GFA+DVE IL P+ +
Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q +FSATMPP IR L+ KYL +P V + +A+ IS I + K + ++
Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTC--KAKTAVAENISQSYIQVA--RKMDALTRV 244
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396
+ E IVF +TK+ + +A + A+ ++ + GD+ Q+QRERT++A RDG +I
Sbjct: 245 L-EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDI 303
Query: 397 LIATDVAARGLDVPNVDLV 415
L+ATDVAARGLDV + V
Sbjct: 304 LVATDVAARGLDVERISHV 322
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=cshA PE=3 SV=1
Length = 528
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 190/316 (60%), Gaps = 12/316 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARGLD+ V V
Sbjct: 297 TDVAARGLDISGVTHV 312
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis
GN=cshA PE=3 SV=1
Length = 528
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 190/316 (60%), Gaps = 12/316 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARGLD+ V V
Sbjct: 297 TDVAARGLDISGVTHV 312
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
(strain Al Hakam) GN=cshA PE=3 SV=1
Length = 528
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 190/316 (60%), Gaps = 12/316 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARGLD+ V V
Sbjct: 297 TDVAARGLDISGVTHV 312
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ZK / E33L) GN=cshA PE=3 SV=1
Length = 528
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 190/316 (60%), Gaps = 12/316 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARGLD+ V V
Sbjct: 297 TDVAARGLDISGVTHV 312
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 190/316 (60%), Gaps = 12/316 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARGLD+ V V
Sbjct: 297 TDVAARGLDISGVTHV 312
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2
Length = 533
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 190/316 (60%), Gaps = 12/316 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE 340
+FSATMP IR + +++ P + + + + I + + +K ++ +L+
Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDI 237
Query: 341 HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399
+ IVF +TKR D L+ A+ + Y E +HGD++Q++R L F++G +L+A
Sbjct: 238 QSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 400 TDVAARGLDVPNVDLV 415
TDVAARGLD+ V V
Sbjct: 297 TDVAARGLDISGVTHV 312
>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12)
GN=rhlE PE=1 SV=3
Length = 454
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 204/356 (57%), Gaps = 19/356 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ L +S DI+ A+A +G + PIQ+ + ++GRD++ A+TGTGKT F +P+L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQM 215
+I + H +GR P+ L+L PTRELA Q+ + + + L+ ++ V+GG I+ QM
Sbjct: 61 QHLIT-RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L GVD +V TPGR++DL +NA+ L +V+ +VLDEAD+ML +GF D+ +L +LP
Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335
RQ+++FSAT I++L K L NPL +++ +D ++ + K ++
Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVA--RRNTASDQVTQHVHFVDKKRKRELLS 237
Query: 336 QLITEHAKGG--KCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG 392
+I KG + +VFT+TK A+ LA + K +HG+ SQ R R L+ F+ G
Sbjct: 238 HMI---GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG 294
Query: 393 RFNILIATDVAARGLDV---PNVDLVELVVLERKEVQFLSTQISRPGKSRVLSEML 445
+L+ATD+AARGLD+ P+V EL + V +I R G++ E L
Sbjct: 295 DIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVH----RIGRTGRAAATGEAL 346
>sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD
PE=3 SV=3
Length = 629
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 187/319 (58%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +I
Sbjct: 241 EAEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARGLDV + LV
Sbjct: 299 LIATDVAARGLDVERISLV 317
>sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3
SV=2
Length = 629
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 187/319 (58%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +I
Sbjct: 241 EAEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARGLDV + LV
Sbjct: 299 LIATDVAARGLDVERISLV 317
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD box protein A OS=Escherichia coli (strain K12)
GN=deaD PE=1 SV=2
Length = 629
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 187/319 (58%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +I
Sbjct: 241 EAEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARGLDV + LV
Sbjct: 299 LIATDVAARGLDVERISLV 317
>sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD box protein A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=deaD PE=3 SV=2
Length = 629
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 187/319 (58%), Gaps = 13/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR +T +++K P V + S D Y M + +++ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK +A A+ ++ YN L+GD++Q+ RE+TL +DGR +I
Sbjct: 241 EAEDFDA--AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARGLDV + LV
Sbjct: 299 LIATDVAARGLDVERISLV 317
>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp.
japonica GN=Os01g0549400 PE=2 SV=2
Length = 792
Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 186/311 (59%), Gaps = 8/311 (2%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I+ + R G S PIQ A+Q +D++ A+TG+GKTL + +P I +
Sbjct: 160 EILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNP 219
Query: 169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
G P LVLAPTRELA Q+ +E F S+ + + C+YGG P Q+R LD GVD V
Sbjct: 220 RSG--PTVLVLAPTRELATQILEEAVKFGRSS-RISSTCLYGGAPKGPQLRDLDRGVDVV 276
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
V TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I++ +P RQ++M++AT
Sbjct: 277 VATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTAT 336
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYEKPSIIGQLITEHAKG 344
P +R + L +P+ V +G D+ +A+ ++ + EK + Q++ G
Sbjct: 337 WPKEVRRIAEDLLVHPVQV-TIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSG 395
Query: 345 GKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404
K ++F TKR D+LA + + + +HGD SQS+RE+ LS FR GR IL+ATDVAA
Sbjct: 396 SKVLIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAA 455
Query: 405 RGLDVPNVDLV 415
RGLD+ ++ +V
Sbjct: 456 RGLDIKDIRVV 466
>sp|Q8K9H6|DEAD_BUCAP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=deaD PE=3 SV=1
Length = 601
Score = 212 bits (540), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 189/319 (59%), Gaps = 14/319 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L ++ I+ +L++ G K PIQ A + ++GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRA 217
+ N K P LVLAPTRELA QV + F + + + I V YGG Q+RA
Sbjct: 68 L-NINLKA-----PQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337
Q+ +FSATMP IR ++ +++KNP + + + + S + + Y + +
Sbjct: 182 QTALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMV----YGRKTDALIR 237
Query: 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFNI 396
E I+F +TK ++ A+ ++ YN L+GD++Q+ RE+TL + GR +I
Sbjct: 238 FLEVEDFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDI 297
Query: 397 LIATDVAARGLDVPNVDLV 415
LIATDVAARGLDV + V
Sbjct: 298 LIATDVAARGLDVDRISFV 316
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 211 bits (538), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 193/333 (57%), Gaps = 20/333 (6%)
Query: 97 EGLDISK-------LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
EG DI K + ++ + + G ++ PIQ AM+GRD+IG A TG+GK
Sbjct: 90 EGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGK 149
Query: 150 TLAFGIPILDKIIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTI 203
TL++ +P I+ N + HG G P+ LVLAPTRELA Q+++E + S+ + T
Sbjct: 150 TLSYLLPA---IVHVNAQPMLAHGDG--PIVLVLAPTRELAVQIQQEASKFGSSSKIKTT 204
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
C+YGG P Q+R L GV+ V+ TPGR+ID+++ N NL V ++VLDEAD+ML +GF
Sbjct: 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFD 264
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
+ I+ + +RQ++ +SAT P + L+ K+L NP V ++G SD K I
Sbjct: 265 PQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKV-IIGSSDLKANRAIRQIVD 323
Query: 324 ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQR 382
S +K + + +L+ + G + +VF TK+ D++ + + +HGD SQ++R
Sbjct: 324 VISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAER 383
Query: 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415
+ LS FR G+ I+ ATDVAARGLDV +V V
Sbjct: 384 DWVLSEFRSGKSPIMTATDVAARGLDVKDVKYV 416
>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus subtilis
(strain 168) GN=cshA PE=1 SV=2
Length = 494
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 185/315 (58%), Gaps = 12/315 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
++S D++ A+ R G + PIQ + + +D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI-- 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
+ N +V+APTRELA QV +E ++ + +YGG I Q+RAL
Sbjct: 66 ----NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
+ +VGTPGR++D I R + L+ V VV+DEAD+ML++GF +D+E IL +P Q+++
Sbjct: 122 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH 341
FSATMP I+ + +++ P V + + + I + + +K + +L+
Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKV--KAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQ 239
Query: 342 AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400
+ IVF +TKR D LA A+ + Y E +HGD++Q++R L F++G +L+AT
Sbjct: 240 SP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVAT 298
Query: 401 DVAARGLDVPNVDLV 415
DVAARGLD+ V V
Sbjct: 299 DVAARGLDISGVTHV 313
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,492,235
Number of Sequences: 539616
Number of extensions: 6977573
Number of successful extensions: 25394
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1677
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 19026
Number of HSP's gapped (non-prelim): 2264
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)