Query 011908
Match_columns 475
No_of_seqs 311 out of 2893
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:33:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 6.3E-64 1.4E-68 484.3 33.4 365 100-464 92-464 (519)
2 COG1200 RecG RecG-like helicas 100.0 6.4E-63 1.4E-67 484.1 25.1 399 30-461 177-604 (677)
3 KOG0330 ATP-dependent RNA heli 100.0 1.1E-61 2.4E-66 439.9 29.9 348 95-451 57-410 (476)
4 COG0513 SrmB Superfamily II DN 100.0 2E-58 4.2E-63 465.5 38.2 347 99-451 29-384 (513)
5 PTZ00110 helicase; Provisional 100.0 9E-58 2E-62 465.1 41.4 366 93-460 124-496 (545)
6 KOG0328 Predicted ATP-dependen 100.0 6.9E-59 1.5E-63 404.5 25.7 365 96-473 24-394 (400)
7 PRK04837 ATP-dependent RNA hel 100.0 7E-57 1.5E-61 449.5 39.4 352 97-451 6-365 (423)
8 PRK10590 ATP-dependent RNA hel 100.0 1.2E-56 2.5E-61 450.7 39.6 349 100-451 2-355 (456)
9 PRK11776 ATP-dependent RNA hel 100.0 3.7E-56 8E-61 449.1 39.2 344 99-452 4-353 (460)
10 PLN00206 DEAD-box ATP-dependen 100.0 6.8E-56 1.5E-60 450.3 39.6 366 93-461 115-488 (518)
11 PRK11634 ATP-dependent RNA hel 100.0 3E-55 6.5E-60 450.2 40.2 344 99-451 6-355 (629)
12 KOG0336 ATP-dependent RNA heli 100.0 6E-57 1.3E-61 410.9 24.4 415 49-464 163-588 (629)
13 PRK04537 ATP-dependent RNA hel 100.0 4.5E-55 9.7E-60 446.7 39.2 358 99-463 9-375 (572)
14 KOG0333 U5 snRNP-like RNA heli 100.0 2.2E-55 4.8E-60 412.4 30.7 355 94-451 240-627 (673)
15 KOG0345 ATP-dependent RNA heli 100.0 4E-55 8.7E-60 406.1 31.8 344 105-450 12-366 (567)
16 KOG0342 ATP-dependent RNA heli 100.0 3.1E-55 6.8E-60 409.5 30.0 354 98-453 81-442 (543)
17 PRK11192 ATP-dependent RNA hel 100.0 5.7E-54 1.2E-58 430.6 40.5 348 100-452 2-356 (434)
18 PRK01297 ATP-dependent RNA hel 100.0 5.6E-53 1.2E-57 427.0 42.9 360 97-463 85-453 (475)
19 KOG0340 ATP-dependent RNA heli 100.0 1.4E-54 3E-59 389.3 27.2 351 97-453 5-366 (442)
20 KOG0326 ATP-dependent RNA heli 100.0 2.6E-55 5.7E-60 388.3 20.3 368 90-471 76-448 (459)
21 KOG0338 ATP-dependent RNA heli 100.0 8.8E-55 1.9E-59 406.9 24.3 358 98-459 180-544 (691)
22 KOG0343 RNA Helicase [RNA proc 100.0 5.4E-54 1.2E-58 405.1 28.0 358 90-451 60-425 (758)
23 PTZ00424 helicase 45; Provisio 100.0 2.1E-52 4.5E-57 416.4 39.3 363 98-473 27-395 (401)
24 PRK10917 ATP-dependent DNA hel 100.0 2.1E-53 4.6E-58 443.4 29.4 384 31-447 177-588 (681)
25 TIGR00643 recG ATP-dependent D 100.0 2E-52 4.3E-57 433.6 30.6 383 32-446 151-564 (630)
26 KOG0348 ATP-dependent RNA heli 100.0 3.7E-52 8E-57 391.4 27.1 355 97-451 134-557 (708)
27 KOG0339 ATP-dependent RNA heli 100.0 1.3E-51 2.9E-56 385.2 30.4 370 93-464 217-591 (731)
28 KOG0335 ATP-dependent RNA heli 100.0 3.6E-52 7.8E-57 395.7 25.6 372 98-470 73-469 (482)
29 KOG0346 RNA helicase [RNA proc 100.0 1.3E-51 2.8E-56 379.4 28.3 353 98-451 18-413 (569)
30 KOG0341 DEAD-box protein abstr 100.0 1.7E-51 3.7E-56 372.9 15.7 356 93-452 164-532 (610)
31 KOG0347 RNA helicase [RNA proc 100.0 3.6E-50 7.8E-55 379.2 17.3 362 98-463 180-585 (731)
32 TIGR03817 DECH_helic helicase/ 100.0 8.9E-48 1.9E-52 402.6 37.2 327 105-447 20-385 (742)
33 TIGR00580 mfd transcription-re 100.0 6.1E-48 1.3E-52 407.2 34.1 355 66-449 390-771 (926)
34 KOG0327 Translation initiation 100.0 2.4E-48 5.2E-53 354.2 24.3 358 99-471 26-389 (397)
35 KOG0334 RNA helicase [RNA proc 100.0 1.5E-47 3.2E-52 388.6 26.4 365 93-460 359-732 (997)
36 PLN03137 ATP-dependent DNA hel 100.0 4.4E-46 9.5E-51 387.3 35.1 334 103-454 441-793 (1195)
37 TIGR00614 recQ_fam ATP-depende 100.0 1.5E-45 3.3E-50 371.3 34.1 318 117-454 7-339 (470)
38 KOG4284 DEAD box protein [Tran 100.0 6.2E-47 1.4E-51 362.9 22.6 346 93-448 19-379 (980)
39 COG1197 Mfd Transcription-repa 100.0 1.8E-46 4E-51 387.7 27.1 355 67-450 534-915 (1139)
40 PRK10689 transcription-repair 100.0 4.5E-45 9.8E-50 393.4 35.0 369 66-463 539-936 (1147)
41 KOG0332 ATP-dependent RNA heli 100.0 6.3E-46 1.4E-50 335.5 23.7 360 93-467 84-459 (477)
42 KOG0337 ATP-dependent RNA heli 100.0 5.8E-46 1.3E-50 340.6 20.5 347 98-451 20-371 (529)
43 PRK11057 ATP-dependent DNA hel 100.0 4.5E-44 9.7E-49 369.7 36.3 325 106-453 9-348 (607)
44 KOG0350 DEAD-box ATP-dependent 100.0 2.6E-45 5.6E-50 343.0 23.4 354 99-458 127-550 (620)
45 PRK02362 ski2-like helicase; P 100.0 5.8E-44 1.2E-48 378.0 34.6 331 100-448 2-397 (737)
46 PRK13767 ATP-dependent helicas 100.0 1E-43 2.2E-48 379.4 35.1 326 106-437 18-383 (876)
47 TIGR01389 recQ ATP-dependent D 100.0 3.4E-43 7.4E-48 364.4 34.5 319 113-452 4-335 (591)
48 PRK00254 ski2-like helicase; P 100.0 7.4E-43 1.6E-47 368.7 32.7 333 100-449 2-389 (720)
49 KOG0344 ATP-dependent RNA heli 100.0 6.8E-43 1.5E-47 334.4 23.5 355 104-461 141-508 (593)
50 COG1201 Lhr Lhr-like helicases 100.0 9.4E-42 2E-46 348.4 29.2 334 106-447 8-361 (814)
51 PRK01172 ski2-like helicase; P 100.0 2.5E-41 5.5E-46 355.6 33.5 328 100-447 2-377 (674)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6.7E-39 1.5E-43 329.3 33.0 319 112-447 6-390 (844)
53 KOG0329 ATP-dependent RNA heli 100.0 7.3E-41 1.6E-45 287.9 15.0 310 99-450 42-357 (387)
54 PRK09751 putative ATP-dependen 100.0 4.6E-39 9.9E-44 348.5 30.8 291 141-438 1-371 (1490)
55 COG0514 RecQ Superfamily II DN 100.0 4.7E-39 1E-43 317.4 26.8 320 112-451 7-340 (590)
56 TIGR01970 DEAH_box_HrpB ATP-de 100.0 8E-37 1.7E-41 319.8 33.4 303 124-452 5-340 (819)
57 PHA02653 RNA helicase NPH-II; 100.0 4.3E-37 9.4E-42 314.5 30.3 306 124-450 167-516 (675)
58 COG1204 Superfamily II helicas 100.0 6E-37 1.3E-41 317.6 26.7 330 103-445 13-405 (766)
59 COG1111 MPH1 ERCC4-like helica 100.0 7.2E-36 1.6E-40 282.1 31.5 318 120-448 14-481 (542)
60 TIGR01587 cas3_core CRISPR-ass 100.0 2.1E-36 4.5E-41 296.5 27.4 300 138-450 1-338 (358)
61 PRK11664 ATP-dependent RNA hel 100.0 4.1E-36 9E-41 315.3 31.3 304 123-452 7-343 (812)
62 PHA02558 uvsW UvsW helicase; P 100.0 6E-36 1.3E-40 303.1 30.7 306 119-447 112-451 (501)
63 PRK14701 reverse gyrase; Provi 100.0 6.8E-36 1.5E-40 329.6 30.5 328 108-459 66-467 (1638)
64 PRK09401 reverse gyrase; Revie 100.0 1.7E-35 3.7E-40 320.1 32.2 287 110-422 69-410 (1176)
65 COG1202 Superfamily II helicas 100.0 3E-36 6.5E-41 286.6 23.0 340 96-452 191-557 (830)
66 PRK12898 secA preprotein trans 100.0 8.9E-34 1.9E-38 285.6 29.4 314 118-451 101-589 (656)
67 COG1205 Distinct helicase fami 100.0 8.8E-34 1.9E-38 298.1 30.5 332 106-449 55-423 (851)
68 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-34 2.4E-39 292.8 22.2 347 117-471 106-514 (1230)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 2.9E-33 6.4E-38 271.4 31.2 288 125-436 1-357 (357)
70 TIGR01054 rgy reverse gyrase. 100.0 1.8E-33 3.9E-38 304.9 32.1 291 108-423 65-410 (1171)
71 PRK13766 Hef nuclease; Provisi 100.0 1.1E-32 2.5E-37 295.4 36.6 321 119-450 13-481 (773)
72 TIGR00603 rad25 DNA repair hel 100.0 6.4E-33 1.4E-37 282.6 29.7 305 120-451 254-610 (732)
73 KOG0354 DEAD-box like helicase 100.0 4.6E-33 9.9E-38 278.1 26.8 320 118-447 59-528 (746)
74 TIGR00963 secA preprotein tran 100.0 1.2E-32 2.6E-37 278.8 29.7 314 118-451 54-520 (745)
75 PRK09200 preprotein translocas 100.0 1.2E-32 2.5E-37 283.4 29.8 314 118-451 76-544 (790)
76 TIGR03714 secA2 accessory Sec 100.0 1.4E-32 3E-37 280.1 27.7 316 121-451 68-540 (762)
77 KOG0349 Putative DEAD-box RNA 100.0 3.3E-33 7.1E-38 257.5 19.0 273 172-447 285-614 (725)
78 KOG0351 ATP-dependent DNA heli 100.0 1.4E-32 2.9E-37 287.0 24.3 327 109-455 251-599 (941)
79 PRK05580 primosome assembly pr 100.0 4.4E-31 9.4E-36 274.9 32.0 308 119-446 142-547 (679)
80 KOG0352 ATP-dependent DNA heli 100.0 3.8E-32 8.2E-37 250.2 17.4 316 122-454 21-368 (641)
81 TIGR00595 priA primosomal prot 100.0 2.1E-30 4.5E-35 260.5 28.3 291 140-450 1-384 (505)
82 PRK11131 ATP-dependent RNA hel 100.0 2.8E-30 6E-35 275.9 29.8 302 122-452 75-415 (1294)
83 COG1061 SSL2 DNA or RNA helica 100.0 4.5E-30 9.7E-35 255.1 26.4 291 120-434 35-375 (442)
84 PRK09694 helicase Cas3; Provis 100.0 3.3E-29 7.1E-34 262.6 31.6 309 120-437 285-664 (878)
85 KOG0353 ATP-dependent DNA heli 100.0 3E-30 6.4E-35 234.5 20.4 332 102-451 74-470 (695)
86 cd00268 DEADc DEAD-box helicas 100.0 1.7E-29 3.6E-34 227.5 24.0 200 101-304 1-202 (203)
87 KOG0951 RNA helicase BRR2, DEA 100.0 8.5E-30 1.8E-34 260.7 20.8 357 106-472 296-726 (1674)
88 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.7E-28 3.7E-33 263.2 28.3 305 123-452 69-408 (1283)
89 PRK04914 ATP-dependent helicas 100.0 6.5E-28 1.4E-32 254.4 29.5 317 121-447 152-602 (956)
90 COG4098 comFA Superfamily II D 100.0 1.8E-27 3.9E-32 214.1 27.1 299 121-447 97-415 (441)
91 PRK13104 secA preprotein trans 100.0 3.4E-27 7.3E-32 242.6 26.9 312 121-451 82-590 (896)
92 KOG0947 Cytoplasmic exosomal R 100.0 1.2E-27 2.7E-32 239.5 22.8 311 118-447 294-722 (1248)
93 KOG0948 Nuclear exosomal RNA h 100.0 4.5E-28 9.7E-33 237.1 18.5 306 118-448 126-539 (1041)
94 PRK12904 preprotein translocas 100.0 1.5E-26 3.1E-31 237.8 28.0 313 118-451 79-576 (830)
95 PRK12906 secA preprotein trans 100.0 1.4E-26 3E-31 236.9 25.2 314 118-451 78-556 (796)
96 PRK11448 hsdR type I restricti 100.0 6E-26 1.3E-30 244.8 30.2 318 120-450 412-817 (1123)
97 COG4581 Superfamily II RNA hel 99.9 1.2E-25 2.7E-30 233.7 26.4 309 119-447 117-536 (1041)
98 PF00270 DEAD: DEAD/DEAH box h 99.9 6.1E-26 1.3E-30 198.2 18.9 163 123-292 1-168 (169)
99 PRK12899 secA preprotein trans 99.9 1.1E-24 2.4E-29 223.7 28.7 146 102-258 65-228 (970)
100 KOG0950 DNA polymerase theta/e 99.9 2E-25 4.3E-30 225.3 20.3 333 106-454 208-617 (1008)
101 COG1643 HrpA HrpA-like helicas 99.9 3.7E-24 8.1E-29 221.4 27.4 306 121-451 50-390 (845)
102 KOG0922 DEAH-box RNA helicase 99.9 4.6E-24 1E-28 208.7 25.9 316 121-463 51-406 (674)
103 PRK13107 preprotein translocas 99.9 4.3E-24 9.3E-29 219.1 22.7 311 121-450 82-593 (908)
104 PLN03142 Probable chromatin-re 99.9 5.8E-23 1.3E-27 217.8 29.0 318 121-450 169-601 (1033)
105 COG1203 CRISPR-associated heli 99.9 3.3E-23 7.2E-28 218.0 23.2 322 121-448 195-550 (733)
106 COG1198 PriA Primosomal protei 99.9 1.7E-22 3.6E-27 206.2 27.1 311 120-450 197-606 (730)
107 KOG0923 mRNA splicing factor A 99.9 4.3E-23 9.2E-28 200.1 19.6 311 120-454 264-612 (902)
108 KOG0920 ATP-dependent RNA heli 99.9 4.4E-22 9.5E-27 205.2 27.2 326 121-462 173-560 (924)
109 COG0556 UvrB Helicase subunit 99.9 1.9E-20 4.1E-25 178.4 27.3 163 276-447 386-556 (663)
110 TIGR00348 hsdR type I site-spe 99.9 2E-20 4.3E-25 195.1 29.2 295 122-435 239-634 (667)
111 TIGR00631 uvrb excinuclease AB 99.9 3.6E-20 7.9E-25 190.9 30.0 119 331-450 429-555 (655)
112 KOG0925 mRNA splicing factor A 99.9 9.5E-21 2E-25 178.0 20.1 335 98-458 24-397 (699)
113 COG4096 HsdR Type I site-speci 99.9 5.9E-21 1.3E-25 191.3 18.9 294 120-435 164-525 (875)
114 KOG0385 Chromatin remodeling c 99.9 7E-20 1.5E-24 180.8 24.6 313 121-450 167-601 (971)
115 KOG0924 mRNA splicing factor A 99.9 5.8E-20 1.2E-24 178.9 22.1 316 120-464 355-715 (1042)
116 PRK12326 preprotein translocas 99.9 2.1E-19 4.5E-24 180.7 26.7 312 118-450 76-549 (764)
117 smart00487 DEXDc DEAD-like hel 99.9 5.4E-20 1.2E-24 164.7 20.2 182 117-305 4-189 (201)
118 TIGR01407 dinG_rel DnaQ family 99.9 1.3E-18 2.9E-23 187.1 33.7 79 343-422 673-756 (850)
119 PRK13103 secA preprotein trans 99.9 8.5E-20 1.8E-24 187.8 23.0 311 121-451 82-594 (913)
120 COG1110 Reverse gyrase [DNA re 99.9 1.5E-19 3.3E-24 184.1 24.1 288 109-423 70-418 (1187)
121 PRK05298 excinuclease ABC subu 99.8 9.2E-19 2E-23 182.0 28.7 116 331-447 433-556 (652)
122 KOG0926 DEAH-box RNA helicase 99.8 5E-20 1.1E-24 182.3 17.7 306 126-450 261-706 (1172)
123 PRK12900 secA preprotein trans 99.8 5.8E-19 1.3E-23 182.4 21.1 124 326-451 579-714 (1025)
124 KOG0387 Transcription-coupled 99.8 3.7E-18 8E-23 169.5 24.8 318 121-450 205-660 (923)
125 KOG1123 RNA polymerase II tran 99.8 5.3E-19 1.2E-23 166.8 16.4 304 120-452 301-657 (776)
126 KOG0949 Predicted helicase, DE 99.8 5.8E-18 1.3E-22 171.0 20.2 157 121-288 511-673 (1330)
127 COG4889 Predicted helicase [Ge 99.8 2.9E-19 6.4E-24 178.2 10.6 327 98-437 139-574 (1518)
128 KOG0384 Chromodomain-helicase 99.8 5.6E-18 1.2E-22 175.2 14.7 316 120-451 369-814 (1373)
129 KOG4150 Predicted ATP-dependen 99.8 1.8E-17 4E-22 158.7 16.9 429 2-447 161-639 (1034)
130 PRK07246 bifunctional ATP-depe 99.8 5.5E-16 1.2E-20 164.7 29.2 78 342-421 645-724 (820)
131 PF04851 ResIII: Type III rest 99.7 3.2E-17 7E-22 145.0 15.7 149 121-287 3-183 (184)
132 CHL00122 secA preprotein trans 99.7 2.8E-16 6.1E-21 161.4 23.6 273 118-410 74-491 (870)
133 cd00046 DEXDc DEAD-like helica 99.7 1.1E-16 2.4E-21 134.8 16.4 143 137-286 1-144 (144)
134 KOG0390 DNA repair protein, SN 99.7 1.5E-15 3.3E-20 154.7 27.4 318 121-448 238-707 (776)
135 PRK12903 secA preprotein trans 99.7 4E-16 8.8E-21 159.4 22.8 312 118-450 76-541 (925)
136 PRK08074 bifunctional ATP-depe 99.7 2.4E-14 5.1E-19 155.1 31.3 80 343-422 751-835 (928)
137 KOG0392 SNF2 family DNA-depend 99.7 3.6E-15 7.9E-20 154.2 22.0 322 121-449 975-1455(1549)
138 KOG0389 SNF2 family DNA-depend 99.7 1.4E-15 3E-20 151.3 18.2 319 121-450 399-890 (941)
139 KOG0953 Mitochondrial RNA heli 99.7 5.1E-16 1.1E-20 148.8 12.9 262 139-448 194-477 (700)
140 TIGR03117 cas_csf4 CRISPR-asso 99.7 5.8E-14 1.3E-18 143.0 28.5 77 343-421 469-560 (636)
141 PRK12902 secA preprotein trans 99.7 1.1E-14 2.4E-19 149.5 23.0 125 121-258 85-218 (939)
142 cd00079 HELICc Helicase superf 99.7 1.8E-15 3.9E-20 125.8 14.1 115 329-443 12-130 (131)
143 PRK14873 primosome assembly pr 99.7 2.2E-14 4.8E-19 147.9 24.8 281 141-450 165-541 (665)
144 KOG1000 Chromatin remodeling p 99.6 1.4E-13 3E-18 130.5 24.0 316 119-451 196-606 (689)
145 PF00271 Helicase_C: Helicase 99.6 6.4E-15 1.4E-19 110.4 7.8 73 366-439 6-78 (78)
146 PRK11747 dinG ATP-dependent DN 99.5 7.1E-12 1.5E-16 131.8 30.5 77 343-422 533-616 (697)
147 KOG0951 RNA helicase BRR2, DEA 99.5 1.2E-13 2.6E-18 143.5 16.7 312 122-458 1144-1504(1674)
148 PF06862 DUF1253: Protein of u 99.5 2.9E-12 6.4E-17 124.3 24.8 279 172-452 36-419 (442)
149 TIGR02562 cas3_yersinia CRISPR 99.5 1.7E-12 3.7E-17 135.7 20.9 88 347-438 759-879 (1110)
150 COG1199 DinG Rad3-related DNA 99.5 6.4E-12 1.4E-16 133.0 25.8 76 344-422 479-559 (654)
151 KOG0386 Chromatin remodeling c 99.5 5.1E-13 1.1E-17 136.5 13.4 310 121-441 394-829 (1157)
152 PRK12901 secA preprotein trans 99.5 3.7E-12 8.1E-17 132.6 19.4 116 332-450 616-743 (1112)
153 KOG0391 SNF2 family DNA-depend 99.4 8.7E-12 1.9E-16 128.7 20.1 123 328-450 1259-1389(1958)
154 KOG2340 Uncharacterized conser 99.4 5.4E-12 1.2E-16 120.8 17.1 333 118-451 213-671 (698)
155 TIGR00604 rad3 DNA repair heli 99.4 1.3E-10 2.8E-15 123.3 28.0 73 118-196 7-83 (705)
156 smart00490 HELICc helicase sup 99.4 1.6E-12 3.5E-17 98.2 8.4 79 360-439 3-82 (82)
157 PF07652 Flavi_DEAD: Flaviviru 99.4 1.5E-12 3.1E-17 105.6 8.1 134 136-289 4-139 (148)
158 KOG1002 Nucleotide excision re 99.4 5.9E-11 1.3E-15 112.9 19.3 153 120-287 183-355 (791)
159 KOG0388 SNF2 family DNA-depend 99.4 5E-11 1.1E-15 117.8 19.4 124 327-450 1026-1156(1185)
160 PF02399 Herpes_ori_bp: Origin 99.3 1.9E-10 4.2E-15 117.6 22.1 258 138-418 51-353 (824)
161 KOG4439 RNA polymerase II tran 99.3 6.9E-11 1.5E-15 116.9 16.3 100 343-442 745-850 (901)
162 PF00176 SNF2_N: SNF2 family N 99.3 3.2E-11 7E-16 115.3 12.3 144 137-288 26-174 (299)
163 COG0610 Type I site-specific r 99.3 7.4E-10 1.6E-14 119.8 23.3 139 137-288 274-415 (962)
164 COG0653 SecA Preprotein transl 99.2 7.4E-10 1.6E-14 114.1 15.6 310 122-450 79-547 (822)
165 KOG1015 Transcription regulato 99.2 2.8E-09 6.1E-14 108.7 19.2 115 330-444 1127-1271(1567)
166 smart00488 DEXDc2 DEAD-like he 99.2 7.5E-10 1.6E-14 104.3 14.4 75 119-196 6-84 (289)
167 smart00489 DEXDc3 DEAD-like he 99.2 7.5E-10 1.6E-14 104.3 14.4 75 119-196 6-84 (289)
168 COG0553 HepA Superfamily II DN 99.0 1.1E-08 2.4E-13 112.6 19.8 321 120-449 337-823 (866)
169 KOG0921 Dosage compensation co 98.9 6.5E-09 1.4E-13 105.7 11.5 310 127-448 384-774 (1282)
170 PF07517 SecA_DEAD: SecA DEAD- 98.9 3.6E-08 7.8E-13 90.4 13.5 127 118-258 75-210 (266)
171 PRK15483 type III restriction- 98.7 2E-07 4.4E-12 98.6 13.2 141 137-288 60-240 (986)
172 PF02562 PhoH: PhoH-like prote 98.6 2.8E-07 6E-12 81.2 10.7 145 120-284 3-154 (205)
173 PF13604 AAA_30: AAA domain; P 98.6 3.1E-07 6.7E-12 81.6 9.9 120 121-282 1-127 (196)
174 KOG0952 DNA/RNA helicase MER3/ 98.6 1.5E-08 3.3E-13 105.0 1.5 256 123-394 929-1206(1230)
175 PF13086 AAA_11: AAA domain; P 98.5 2.6E-07 5.6E-12 84.8 8.4 74 121-195 1-75 (236)
176 TIGR00596 rad1 DNA repair prot 98.5 5.2E-06 1.1E-10 88.0 16.6 67 222-288 8-74 (814)
177 KOG1802 RNA helicase nonsense 98.5 4.5E-06 9.8E-11 83.1 14.8 83 114-206 403-485 (935)
178 PF13872 AAA_34: P-loop contai 98.4 8.6E-06 1.9E-10 75.1 13.8 168 103-289 25-223 (303)
179 KOG1016 Predicted DNA helicase 98.4 2.3E-05 4.9E-10 79.4 17.2 107 344-450 719-849 (1387)
180 PRK10536 hypothetical protein; 98.3 1.9E-05 4.1E-10 71.6 14.9 142 117-282 55-209 (262)
181 KOG1803 DNA helicase [Replicat 98.3 6.5E-06 1.4E-10 81.5 10.6 66 120-194 184-250 (649)
182 PF09848 DUF2075: Uncharacteri 98.2 6.4E-06 1.4E-10 80.4 10.0 94 138-259 3-97 (352)
183 PRK10875 recD exonuclease V su 98.2 2.3E-05 5.1E-10 81.0 14.3 143 122-285 153-301 (615)
184 TIGR01447 recD exodeoxyribonuc 98.1 3.7E-05 8E-10 79.4 14.1 142 123-284 147-294 (586)
185 PF12340 DUF3638: Protein of u 98.1 3.7E-05 8.1E-10 68.4 12.0 149 100-259 4-186 (229)
186 TIGR01448 recD_rel helicase, p 98.1 4.1E-05 9E-10 81.3 14.5 132 114-285 316-452 (720)
187 TIGR00376 DNA helicase, putati 98.1 3.3E-05 7.2E-10 80.7 12.5 67 121-196 157-224 (637)
188 PF13307 Helicase_C_2: Helicas 98.0 3E-05 6.5E-10 67.0 9.3 77 344-422 9-92 (167)
189 KOG1132 Helicase of the DEAD s 98.0 4.6E-05 1E-09 78.7 11.5 140 119-258 19-260 (945)
190 PF13245 AAA_19: Part of AAA d 98.0 2E-05 4.3E-10 57.9 6.2 52 137-193 11-62 (76)
191 COG3421 Uncharacterized protei 97.9 0.0001 2.2E-09 73.0 10.5 139 141-288 2-167 (812)
192 TIGR02768 TraA_Ti Ti-type conj 97.8 0.0004 8.6E-09 74.2 15.4 122 120-283 351-474 (744)
193 PRK13889 conjugal transfer rel 97.8 0.00033 7.2E-09 76.0 14.9 126 117-285 343-470 (988)
194 COG3587 Restriction endonuclea 97.8 0.00016 3.4E-09 74.6 11.1 43 393-435 483-527 (985)
195 COG1875 NYN ribonuclease and A 97.7 0.0002 4.4E-09 67.1 9.1 142 117-282 224-384 (436)
196 KOG1805 DNA replication helica 97.7 0.00042 9.2E-09 72.5 11.8 137 104-259 656-810 (1100)
197 PRK13826 Dtr system oriT relax 97.6 0.0012 2.6E-08 72.3 15.4 137 106-285 367-505 (1102)
198 PF00580 UvrD-helicase: UvrD/R 97.6 0.00021 4.6E-09 68.6 8.1 123 122-255 1-125 (315)
199 PRK04296 thymidine kinase; Pro 97.5 0.00028 6E-09 62.4 7.2 35 138-181 4-38 (190)
200 PRK06526 transposase; Provisio 97.4 0.0012 2.7E-08 60.9 10.2 30 131-160 93-122 (254)
201 PF14617 CMS1: U3-containing 9 97.4 0.00054 1.2E-08 62.3 7.4 86 171-256 124-212 (252)
202 cd00009 AAA The AAA+ (ATPases 97.4 0.0028 6E-08 52.9 11.4 18 136-153 19-36 (151)
203 PF13401 AAA_22: AAA domain; P 97.3 0.00064 1.4E-08 56.0 6.9 20 136-155 4-23 (131)
204 PHA02533 17 large terminase pr 97.3 0.0019 4.1E-08 66.1 11.2 126 120-259 58-183 (534)
205 PRK08181 transposase; Validate 97.3 0.0038 8.2E-08 58.0 12.0 58 122-189 88-149 (269)
206 PF05970 PIF1: PIF1-like helic 97.3 0.0012 2.6E-08 64.7 8.8 121 121-273 1-129 (364)
207 PRK12723 flagellar biosynthesi 97.2 0.0058 1.2E-07 59.8 13.2 130 137-297 175-309 (388)
208 PRK14974 cell division protein 97.2 0.007 1.5E-07 58.1 13.5 130 138-298 142-276 (336)
209 TIGR02760 TraI_TIGR conjugativ 97.2 0.048 1E-06 64.5 21.7 237 120-393 428-686 (1960)
210 PRK11054 helD DNA helicase IV; 97.1 0.0043 9.3E-08 65.5 11.6 80 112-198 187-266 (684)
211 smart00382 AAA ATPases associa 97.0 0.0022 4.9E-08 53.0 7.0 18 136-153 2-19 (148)
212 KOG0298 DEAD box-containing he 96.9 0.0022 4.7E-08 69.2 7.6 154 136-293 374-557 (1394)
213 PRK14712 conjugal transfer nic 96.9 0.0095 2.1E-07 67.6 13.0 66 120-190 834-901 (1623)
214 PF00448 SRP54: SRP54-type pro 96.9 0.0072 1.6E-07 53.5 9.9 129 139-297 4-136 (196)
215 PRK08116 hypothetical protein; 96.9 0.029 6.3E-07 52.4 14.1 45 138-192 116-160 (268)
216 KOG1131 RNA polymerase II tran 96.9 0.0073 1.6E-07 59.3 10.0 47 119-165 14-64 (755)
217 KOG0989 Replication factor C, 96.9 0.0039 8.5E-08 57.4 7.5 47 240-287 124-170 (346)
218 PRK05703 flhF flagellar biosyn 96.8 0.062 1.3E-06 53.6 16.6 128 137-297 222-354 (424)
219 PRK06921 hypothetical protein; 96.8 0.025 5.5E-07 52.7 12.5 44 136-188 117-160 (266)
220 cd01124 KaiC KaiC is a circadi 96.7 0.003 6.5E-08 55.6 5.9 48 139-196 2-49 (187)
221 PRK12727 flagellar biosynthesi 96.7 0.096 2.1E-06 53.0 16.7 128 136-297 350-481 (559)
222 PRK12377 putative replication 96.7 0.011 2.4E-07 54.2 9.5 47 137-193 102-148 (248)
223 KOG1001 Helicase-like transcri 96.7 0.0047 1E-07 64.6 7.8 96 346-441 541-641 (674)
224 PRK10917 ATP-dependent DNA hel 96.7 0.0094 2E-07 63.5 10.1 104 325-428 290-400 (681)
225 COG2256 MGS1 ATPase related to 96.7 0.0068 1.5E-07 58.0 7.9 34 247-286 106-140 (436)
226 PRK13709 conjugal transfer nic 96.7 0.021 4.4E-07 65.9 13.0 127 120-285 966-1099(1747)
227 PRK07952 DNA replication prote 96.6 0.04 8.7E-07 50.4 12.5 24 137-161 100-123 (244)
228 PRK14722 flhF flagellar biosyn 96.6 0.029 6.4E-07 54.5 12.0 129 136-297 137-269 (374)
229 PRK11889 flhF flagellar biosyn 96.5 0.09 1.9E-06 51.2 14.6 128 137-298 242-375 (436)
230 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.019 4.1E-07 52.2 9.8 43 246-288 91-134 (226)
231 PRK05642 DNA replication initi 96.5 0.01 2.2E-07 54.3 8.0 45 244-288 96-141 (234)
232 TIGR01547 phage_term_2 phage t 96.5 0.0079 1.7E-07 59.9 7.7 143 138-298 3-152 (396)
233 PF03354 Terminase_1: Phage Te 96.5 0.013 2.9E-07 59.7 9.4 149 124-283 1-160 (477)
234 PRK06893 DNA replication initi 96.5 0.0098 2.1E-07 54.2 7.7 45 244-288 90-136 (229)
235 PRK08084 DNA replication initi 96.5 0.012 2.5E-07 53.9 8.0 17 137-153 46-62 (235)
236 PRK08727 hypothetical protein; 96.4 0.023 4.9E-07 52.0 9.6 16 138-153 43-58 (233)
237 PRK08903 DnaA regulatory inact 96.4 0.024 5.2E-07 51.6 9.5 43 245-288 90-133 (227)
238 PF00004 AAA: ATPase family as 96.3 0.05 1.1E-06 44.5 10.5 15 139-153 1-15 (132)
239 PRK06835 DNA replication prote 96.3 0.084 1.8E-06 50.7 13.1 44 136-189 183-226 (329)
240 PRK00771 signal recognition pa 96.3 0.095 2.1E-06 52.3 13.8 53 246-298 176-229 (437)
241 TIGR00643 recG ATP-dependent D 96.3 0.018 4E-07 60.8 9.3 103 326-428 265-374 (630)
242 cd01120 RecA-like_NTPases RecA 96.2 0.058 1.3E-06 45.8 10.8 38 139-185 2-39 (165)
243 COG3973 Superfamily I DNA and 96.2 0.027 5.9E-07 56.6 9.3 87 108-198 192-285 (747)
244 PRK12402 replication factor C 96.2 0.034 7.4E-07 54.0 10.1 40 244-285 124-163 (337)
245 TIGR01075 uvrD DNA helicase II 96.2 0.023 5E-07 61.1 9.6 72 120-198 3-74 (715)
246 PRK09183 transposase/IS protei 96.2 0.066 1.4E-06 49.7 11.4 24 133-156 99-122 (259)
247 PRK11331 5-methylcytosine-spec 96.2 0.041 9E-07 54.4 10.4 33 121-153 179-211 (459)
248 PRK10919 ATP-dependent DNA hel 96.2 0.013 2.8E-07 62.3 7.4 71 121-198 2-72 (672)
249 TIGR02785 addA_Gpos recombinat 96.2 0.018 4E-07 65.4 9.0 124 121-256 1-126 (1232)
250 PRK14087 dnaA chromosomal repl 96.2 0.048 1E-06 54.9 11.1 50 137-194 142-191 (450)
251 TIGR01074 rep ATP-dependent DN 96.1 0.027 5.9E-07 60.1 9.7 70 122-198 2-71 (664)
252 PRK00149 dnaA chromosomal repl 96.1 0.038 8.3E-07 55.9 10.3 49 137-193 149-197 (450)
253 COG1419 FlhF Flagellar GTP-bin 96.1 0.16 3.5E-06 49.3 13.8 132 136-299 203-337 (407)
254 PRK11773 uvrD DNA-dependent he 96.1 0.027 5.9E-07 60.5 9.6 71 121-198 9-79 (721)
255 PRK05707 DNA polymerase III su 96.1 0.021 4.6E-07 54.8 7.9 35 121-155 3-41 (328)
256 cd01122 GP4d_helicase GP4d_hel 96.1 0.023 5E-07 53.3 8.0 59 129-196 23-81 (271)
257 PF00308 Bac_DnaA: Bacterial d 96.1 0.025 5.3E-07 51.2 7.8 106 138-289 36-143 (219)
258 TIGR00362 DnaA chromosomal rep 96.1 0.035 7.5E-07 55.4 9.5 43 138-188 138-180 (405)
259 PRK05580 primosome assembly pr 96.0 0.05 1.1E-06 57.9 11.0 93 328-421 173-268 (679)
260 COG4626 Phage terminase-like p 96.0 0.047 1E-06 54.8 9.9 148 119-285 59-224 (546)
261 PLN03025 replication factor C 96.0 0.1 2.2E-06 50.2 12.2 41 244-286 98-138 (319)
262 PRK07764 DNA polymerase III su 96.0 0.029 6.3E-07 60.5 9.1 39 244-283 119-157 (824)
263 TIGR02760 TraI_TIGR conjugativ 96.0 0.057 1.2E-06 63.8 12.2 66 120-190 1018-1085(1960)
264 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.077 1.7E-06 45.0 9.8 52 243-294 93-146 (159)
265 PF05496 RuvB_N: Holliday junc 95.9 0.038 8.3E-07 49.2 7.9 16 138-153 52-67 (233)
266 KOG2028 ATPase related to the 95.9 0.034 7.4E-07 52.5 7.9 38 244-286 221-258 (554)
267 TIGR00595 priA primosomal prot 95.9 0.068 1.5E-06 54.7 10.9 93 327-420 7-102 (505)
268 PF13173 AAA_14: AAA domain 95.9 0.096 2.1E-06 42.8 9.8 37 245-285 61-97 (128)
269 PRK04195 replication factor C 95.8 0.07 1.5E-06 54.5 10.7 18 136-153 39-56 (482)
270 TIGR00580 mfd transcription-re 95.8 0.049 1.1E-06 59.6 9.9 104 325-428 480-590 (926)
271 PF13177 DNA_pol3_delta2: DNA 95.8 0.047 1E-06 46.7 8.0 42 244-286 101-142 (162)
272 TIGR02881 spore_V_K stage V sp 95.8 0.11 2.3E-06 48.5 11.1 17 137-153 43-59 (261)
273 PRK14964 DNA polymerase III su 95.8 0.058 1.2E-06 54.5 9.6 20 138-157 37-56 (491)
274 PRK14873 primosome assembly pr 95.8 0.046 9.9E-07 57.6 9.2 91 327-418 170-264 (665)
275 COG1435 Tdk Thymidine kinase [ 95.7 0.097 2.1E-06 45.4 9.5 113 138-286 6-118 (201)
276 PRK13342 recombination factor 95.7 0.081 1.8E-06 52.9 10.4 37 245-286 92-128 (413)
277 PRK14088 dnaA chromosomal repl 95.7 0.094 2E-06 52.8 10.7 38 137-181 131-168 (440)
278 PHA02544 44 clamp loader, smal 95.7 0.065 1.4E-06 51.5 9.4 41 244-285 99-139 (316)
279 TIGR01073 pcrA ATP-dependent D 95.7 0.052 1.1E-06 58.5 9.5 72 120-198 3-74 (726)
280 PRK14960 DNA polymerase III su 95.7 0.064 1.4E-06 55.6 9.5 40 244-285 117-156 (702)
281 PTZ00112 origin recognition co 95.6 0.19 4.1E-06 53.7 12.8 23 139-162 784-806 (1164)
282 PRK08533 flagellar accessory p 95.6 0.12 2.7E-06 47.0 10.5 53 134-196 22-74 (230)
283 PRK14958 DNA polymerase III su 95.6 0.077 1.7E-06 54.3 10.0 39 244-283 118-156 (509)
284 PRK07003 DNA polymerase III su 95.6 0.081 1.8E-06 55.6 10.1 40 244-285 118-157 (830)
285 KOG0742 AAA+-type ATPase [Post 95.6 0.016 3.4E-07 55.5 4.5 49 98-153 351-401 (630)
286 PF05621 TniB: Bacterial TniB 95.6 0.066 1.4E-06 50.0 8.5 119 137-285 62-188 (302)
287 PRK12422 chromosomal replicati 95.5 0.079 1.7E-06 53.3 9.5 43 137-189 142-184 (445)
288 PHA03333 putative ATPase subun 95.5 0.27 5.8E-06 51.1 13.1 69 122-198 170-241 (752)
289 PRK12323 DNA polymerase III su 95.5 0.16 3.4E-06 52.7 11.5 18 139-156 41-58 (700)
290 PRK14952 DNA polymerase III su 95.5 0.081 1.7E-06 54.8 9.5 40 243-283 116-155 (584)
291 KOG0733 Nuclear AAA ATPase (VC 95.5 0.072 1.6E-06 53.9 8.7 58 93-153 502-562 (802)
292 TIGR03015 pepcterm_ATPase puta 95.4 0.3 6.5E-06 45.6 12.7 33 121-153 23-60 (269)
293 PRK12726 flagellar biosynthesi 95.4 0.47 1E-05 46.1 13.8 119 137-288 207-329 (407)
294 COG4962 CpaF Flp pilus assembl 95.4 0.031 6.8E-07 52.7 5.7 61 119-189 155-216 (355)
295 PRK09111 DNA polymerase III su 95.4 0.095 2E-06 54.6 9.8 40 243-283 130-169 (598)
296 PRK14956 DNA polymerase III su 95.4 0.023 4.9E-07 56.9 5.0 18 139-156 43-60 (484)
297 PRK11823 DNA repair protein Ra 95.3 0.17 3.7E-06 50.9 11.3 91 136-259 80-170 (446)
298 PRK08691 DNA polymerase III su 95.3 0.12 2.6E-06 54.1 10.2 40 243-283 117-156 (709)
299 TIGR01425 SRP54_euk signal rec 95.3 0.41 8.9E-06 47.5 13.5 130 138-297 102-235 (429)
300 PRK13341 recombination factor 95.3 0.12 2.7E-06 55.0 10.5 39 245-288 109-147 (725)
301 PRK13833 conjugal transfer pro 95.3 0.07 1.5E-06 51.0 7.9 66 112-186 121-187 (323)
302 smart00491 HELICc2 helicase su 95.3 0.12 2.6E-06 43.1 8.4 44 379-422 30-80 (142)
303 KOG0344 ATP-dependent RNA heli 95.3 0.16 3.4E-06 51.0 10.4 104 139-256 360-467 (593)
304 COG1198 PriA Primosomal protei 95.3 0.055 1.2E-06 57.0 7.7 93 324-417 224-319 (730)
305 PRK00411 cdc6 cell division co 95.3 0.15 3.2E-06 50.7 10.6 24 137-161 56-79 (394)
306 PRK14961 DNA polymerase III su 95.2 0.1 2.2E-06 51.1 9.1 17 139-155 41-57 (363)
307 PF05127 Helicase_RecD: Helica 95.2 0.014 3E-07 50.4 2.6 123 140-288 1-125 (177)
308 PTZ00293 thymidine kinase; Pro 95.2 0.17 3.6E-06 45.0 9.4 37 138-183 6-42 (211)
309 PRK05986 cob(I)alamin adenolsy 95.2 0.22 4.8E-06 43.4 10.0 143 135-294 21-166 (191)
310 PRK06645 DNA polymerase III su 95.2 0.057 1.2E-06 54.9 7.3 19 138-156 45-63 (507)
311 PRK08769 DNA polymerase III su 95.1 0.1 2.2E-06 49.9 8.4 36 120-155 3-45 (319)
312 PRK06731 flhF flagellar biosyn 95.1 0.61 1.3E-05 43.4 13.4 130 136-298 75-209 (270)
313 PRK14086 dnaA chromosomal repl 95.1 0.08 1.7E-06 54.6 8.0 46 243-288 375-422 (617)
314 KOG1133 Helicase of the DEAD s 95.1 0.037 8E-07 56.4 5.5 46 119-164 13-62 (821)
315 PRK14969 DNA polymerase III su 95.0 0.14 2.9E-06 52.8 9.7 40 243-283 117-156 (527)
316 cd00984 DnaB_C DnaB helicase C 95.0 0.22 4.7E-06 45.7 10.3 39 134-180 11-49 (242)
317 PRK13894 conjugal transfer ATP 95.0 0.087 1.9E-06 50.4 7.7 66 111-185 124-190 (319)
318 PRK06620 hypothetical protein; 95.0 0.078 1.7E-06 47.7 7.0 39 246-288 86-124 (214)
319 PRK06964 DNA polymerase III su 95.0 0.18 3.8E-06 48.7 9.7 36 122-157 2-42 (342)
320 TIGR03600 phage_DnaB phage rep 95.0 0.53 1.2E-05 47.2 13.6 118 132-259 190-319 (421)
321 TIGR00064 ftsY signal recognit 95.0 0.53 1.1E-05 44.0 12.6 131 138-298 74-214 (272)
322 TIGR02782 TrbB_P P-type conjug 94.9 0.1 2.2E-06 49.6 7.9 67 111-186 108-175 (299)
323 PRK14957 DNA polymerase III su 94.9 0.19 4.1E-06 51.6 10.2 40 243-283 117-156 (546)
324 PRK14949 DNA polymerase III su 94.9 0.12 2.6E-06 55.5 8.9 17 139-155 41-57 (944)
325 PRK14965 DNA polymerase III su 94.9 0.16 3.5E-06 53.0 9.8 40 243-283 117-156 (576)
326 PHA03368 DNA packaging termina 94.8 0.13 2.7E-06 53.2 8.6 130 137-286 255-390 (738)
327 TIGR03689 pup_AAA proteasome A 94.8 0.076 1.7E-06 53.9 7.0 17 137-153 217-233 (512)
328 TIGR00708 cobA cob(I)alamin ad 94.8 0.23 5E-06 42.6 8.9 51 244-294 96-148 (173)
329 PRK07994 DNA polymerase III su 94.8 0.16 3.5E-06 53.1 9.5 19 139-157 41-59 (647)
330 PRK05896 DNA polymerase III su 94.8 0.077 1.7E-06 54.7 7.0 19 138-156 40-58 (605)
331 PRK00440 rfc replication facto 94.8 0.54 1.2E-05 45.1 12.7 39 244-283 101-139 (319)
332 PRK05973 replicative DNA helic 94.7 0.12 2.6E-06 47.0 7.5 83 103-196 22-114 (237)
333 PHA00350 putative assembly pro 94.7 0.33 7E-06 47.6 10.8 23 139-161 4-27 (399)
334 PRK13900 type IV secretion sys 94.7 0.1 2.3E-06 50.2 7.4 44 133-186 157-200 (332)
335 PRK06995 flhF flagellar biosyn 94.7 1.2 2.6E-05 45.0 15.0 20 138-157 258-277 (484)
336 PRK06904 replicative DNA helic 94.6 0.68 1.5E-05 47.0 13.4 116 134-258 219-347 (472)
337 COG2909 MalT ATP-dependent tra 94.6 0.16 3.5E-06 53.5 8.9 43 246-288 130-172 (894)
338 PF01695 IstB_IS21: IstB-like 94.6 0.064 1.4E-06 46.7 5.3 47 133-189 44-90 (178)
339 PRK10689 transcription-repair 94.6 0.17 3.7E-06 56.8 9.7 105 324-428 628-739 (1147)
340 PRK07471 DNA polymerase III su 94.6 0.29 6.4E-06 47.8 10.3 41 244-285 140-180 (365)
341 PRK14963 DNA polymerase III su 94.6 0.12 2.5E-06 52.9 7.8 22 139-161 39-60 (504)
342 COG0470 HolB ATPase involved i 94.6 0.27 5.9E-06 47.3 10.1 39 244-283 108-146 (325)
343 CHL00181 cbbX CbbX; Provisiona 94.6 0.54 1.2E-05 44.4 11.7 20 136-155 59-78 (287)
344 PRK08939 primosomal protein Dn 94.5 0.21 4.5E-06 47.6 8.9 25 136-161 156-180 (306)
345 PRK08699 DNA polymerase III su 94.5 0.37 8E-06 46.3 10.7 35 123-157 3-42 (325)
346 PRK12724 flagellar biosynthesi 94.5 1.2 2.6E-05 44.1 14.1 125 138-297 225-356 (432)
347 PRK13851 type IV secretion sys 94.5 0.057 1.2E-06 52.1 5.1 45 132-186 158-202 (344)
348 PRK14723 flhF flagellar biosyn 94.4 0.44 9.6E-06 50.6 11.7 66 228-297 250-317 (767)
349 COG1110 Reverse gyrase [DNA re 94.4 0.098 2.1E-06 56.0 6.8 61 343-403 124-191 (1187)
350 cd01121 Sms Sms (bacterial rad 94.4 0.41 8.9E-06 46.9 10.7 90 136-258 82-171 (372)
351 PRK10867 signal recognition pa 94.3 0.93 2E-05 45.3 13.2 21 138-158 102-122 (433)
352 PRK03992 proteasome-activating 94.3 0.23 4.9E-06 49.2 9.0 17 137-153 166-182 (389)
353 smart00492 HELICc3 helicase su 94.3 0.19 4.1E-06 41.8 7.1 51 372-422 26-79 (141)
354 PRK14962 DNA polymerase III su 94.3 0.26 5.6E-06 49.9 9.4 17 139-155 39-55 (472)
355 TIGR03881 KaiC_arch_4 KaiC dom 94.3 0.74 1.6E-05 41.8 11.8 52 135-196 19-70 (229)
356 PRK14959 DNA polymerase III su 94.2 0.1 2.2E-06 54.2 6.4 20 138-157 40-59 (624)
357 PRK06090 DNA polymerase III su 94.2 0.22 4.7E-06 47.6 8.2 37 121-157 3-46 (319)
358 COG1200 RecG RecG-like helicas 94.2 0.31 6.6E-06 50.3 9.6 97 332-428 299-401 (677)
359 PRK14955 DNA polymerase III su 94.2 0.19 4.2E-06 49.9 8.3 18 139-156 41-58 (397)
360 PRK14951 DNA polymerase III su 94.2 0.22 4.8E-06 51.9 8.9 18 139-156 41-58 (618)
361 PRK09112 DNA polymerase III su 94.2 0.47 1E-05 46.1 10.6 41 244-285 140-180 (351)
362 COG1444 Predicted P-loop ATPas 94.1 0.53 1.1E-05 49.7 11.4 138 122-287 212-357 (758)
363 PRK07133 DNA polymerase III su 94.1 0.13 2.9E-06 54.1 7.2 18 139-156 43-60 (725)
364 COG3972 Superfamily I DNA and 94.1 0.46 9.9E-06 47.0 10.1 80 109-197 151-230 (660)
365 PRK07940 DNA polymerase III su 94.1 0.61 1.3E-05 46.1 11.4 40 244-285 116-155 (394)
366 PRK08451 DNA polymerase III su 94.1 0.21 4.6E-06 51.1 8.4 40 243-283 115-154 (535)
367 KOG0991 Replication factor C, 94.0 0.2 4.4E-06 44.5 7.0 38 243-281 111-148 (333)
368 COG1484 DnaC DNA replication p 94.0 0.13 2.7E-06 47.7 6.1 51 135-195 104-154 (254)
369 COG2804 PulE Type II secretory 94.0 0.13 2.8E-06 51.3 6.4 40 122-162 242-283 (500)
370 PF02572 CobA_CobO_BtuR: ATP:c 94.0 0.99 2.1E-05 38.8 11.0 137 139-294 6-147 (172)
371 PRK05563 DNA polymerase III su 94.0 0.28 6.1E-06 50.9 9.2 20 138-157 40-59 (559)
372 TIGR02928 orc1/cdc6 family rep 93.9 0.44 9.6E-06 46.8 10.3 24 137-161 41-64 (365)
373 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.14 3E-06 47.0 6.2 52 136-197 21-72 (237)
374 PRK06067 flagellar accessory p 93.9 0.33 7.2E-06 44.3 8.6 51 136-196 25-75 (234)
375 TIGR00678 holB DNA polymerase 93.8 0.42 9.2E-06 41.9 9.0 23 138-161 16-38 (188)
376 PF05876 Terminase_GpA: Phage 93.7 0.18 3.9E-06 52.2 7.3 152 121-288 16-181 (557)
377 PRK14950 DNA polymerase III su 93.7 0.43 9.3E-06 50.0 10.1 19 138-156 40-58 (585)
378 COG2109 BtuR ATP:corrinoid ade 93.7 0.73 1.6E-05 39.7 9.5 52 245-296 122-175 (198)
379 PRK11034 clpA ATP-dependent Cl 93.7 0.33 7.2E-06 52.1 9.2 44 246-289 279-326 (758)
380 PRK09376 rho transcription ter 93.7 0.37 8E-06 47.0 8.6 28 133-161 166-193 (416)
381 PRK14954 DNA polymerase III su 93.6 0.3 6.6E-06 51.1 8.7 19 138-156 40-58 (620)
382 KOG0730 AAA+-type ATPase [Post 93.6 0.35 7.6E-06 49.6 8.6 57 94-153 426-485 (693)
383 PRK07004 replicative DNA helic 93.5 0.57 1.2E-05 47.5 10.3 114 135-258 212-337 (460)
384 PRK10416 signal recognition pa 93.5 2.6 5.5E-05 40.4 14.2 54 244-297 195-255 (318)
385 TIGR01243 CDC48 AAA family ATP 93.5 0.38 8.2E-06 52.0 9.6 17 137-153 488-504 (733)
386 PRK06871 DNA polymerase III su 93.5 0.42 9.2E-06 45.7 8.8 36 122-157 3-45 (325)
387 KOG1513 Nuclear helicase MOP-3 93.5 0.14 3.1E-06 53.2 5.7 152 121-286 264-454 (1300)
388 cd01130 VirB11-like_ATPase Typ 93.4 0.22 4.8E-06 43.7 6.4 38 114-153 4-42 (186)
389 TIGR02639 ClpA ATP-dependent C 93.4 0.79 1.7E-05 49.5 11.6 17 137-153 204-220 (731)
390 PRK05748 replicative DNA helic 93.4 1 2.2E-05 45.6 11.9 114 135-258 202-327 (448)
391 TIGR00959 ffh signal recogniti 93.4 2 4.4E-05 42.9 13.6 22 138-159 101-122 (428)
392 TIGR03499 FlhF flagellar biosy 93.3 0.39 8.5E-06 45.2 8.3 20 138-157 196-215 (282)
393 PRK08840 replicative DNA helic 93.3 1.3 2.9E-05 44.8 12.5 122 128-258 209-342 (464)
394 PRK08506 replicative DNA helic 93.3 0.93 2E-05 46.1 11.5 113 135-258 191-315 (472)
395 COG0593 DnaA ATPase involved i 93.3 0.27 5.9E-06 48.2 7.2 46 245-290 175-222 (408)
396 COG1474 CDC6 Cdc6-related prot 93.3 1.9 4.1E-05 42.2 13.1 23 138-161 44-66 (366)
397 PRK07414 cob(I)yrinic acid a,c 93.2 1.4 3.1E-05 37.9 10.7 141 139-294 24-166 (178)
398 COG4098 comFA Superfamily II D 93.2 0.84 1.8E-05 43.1 9.9 82 172-259 304-387 (441)
399 TIGR00665 DnaB replicative DNA 93.2 0.99 2.2E-05 45.5 11.5 113 135-258 194-318 (434)
400 COG1702 PhoH Phosphate starvat 93.1 0.56 1.2E-05 44.4 8.7 46 118-163 125-170 (348)
401 TIGR01243 CDC48 AAA family ATP 93.1 0.65 1.4E-05 50.3 10.6 19 135-153 211-229 (733)
402 KOG0739 AAA+-type ATPase [Post 93.1 0.82 1.8E-05 42.4 9.4 106 138-293 168-284 (439)
403 PF06745 KaiC: KaiC; InterPro 93.1 0.14 3E-06 46.6 4.7 53 136-197 19-71 (226)
404 TIGR00767 rho transcription te 93.1 0.57 1.2E-05 45.9 9.0 29 132-161 164-192 (415)
405 cd03115 SRP The signal recogni 93.1 2.2 4.7E-05 36.8 12.1 54 244-297 81-135 (173)
406 PF01443 Viral_helicase1: Vira 93.0 0.13 2.7E-06 47.0 4.4 13 139-151 1-13 (234)
407 PRK14721 flhF flagellar biosyn 92.9 1.5 3.3E-05 43.6 11.9 129 137-297 192-323 (420)
408 PRK07993 DNA polymerase III su 92.9 0.28 6E-06 47.4 6.7 36 122-157 3-45 (334)
409 KOG0741 AAA+-type ATPase [Post 92.9 1.2 2.6E-05 44.7 10.8 52 103-154 493-556 (744)
410 PHA00729 NTP-binding motif con 92.9 0.37 8E-06 43.3 6.9 16 138-153 19-34 (226)
411 PF03796 DnaB_C: DnaB-like hel 92.8 0.45 9.8E-06 44.2 7.8 141 135-285 18-179 (259)
412 PRK14948 DNA polymerase III su 92.8 0.31 6.7E-06 51.2 7.3 19 138-156 40-58 (620)
413 PF03237 Terminase_6: Terminas 92.7 1.9 4.2E-05 42.1 12.7 145 140-301 1-154 (384)
414 COG2805 PilT Tfp pilus assembl 92.6 0.31 6.8E-06 45.2 6.2 24 139-163 128-151 (353)
415 TIGR00635 ruvB Holliday juncti 92.6 0.21 4.5E-06 47.7 5.4 17 137-153 31-47 (305)
416 PRK06647 DNA polymerase III su 92.5 0.65 1.4E-05 48.2 9.2 18 138-155 40-57 (563)
417 PRK14953 DNA polymerase III su 92.5 0.24 5.2E-06 50.4 5.9 18 139-156 41-58 (486)
418 PF01637 Arch_ATPase: Archaeal 92.4 0.42 9.1E-06 43.2 7.1 55 228-286 105-165 (234)
419 PF03969 AFG1_ATPase: AFG1-lik 92.2 2.9 6.3E-05 40.8 12.7 109 137-290 63-172 (362)
420 PRK04328 hypothetical protein; 92.2 0.35 7.6E-06 44.7 6.2 52 136-197 23-74 (249)
421 PRK08006 replicative DNA helic 92.2 2.5 5.4E-05 43.0 12.6 115 135-258 223-349 (471)
422 cd01129 PulE-GspE PulE/GspE Th 92.1 0.38 8.2E-06 44.8 6.3 39 122-161 64-104 (264)
423 COG0630 VirB11 Type IV secreto 92.1 0.37 8E-06 46.0 6.3 55 121-185 127-182 (312)
424 PF00437 T2SE: Type II/IV secr 92.0 0.24 5.3E-06 46.3 5.0 53 124-185 114-167 (270)
425 TIGR02868 CydC thiol reductant 91.9 0.85 1.8E-05 47.3 9.4 19 133-151 358-376 (529)
426 PHA00012 I assembly protein 91.9 1.9 4.2E-05 40.8 10.5 26 138-163 3-28 (361)
427 PRK09354 recA recombinase A; P 91.9 0.6 1.3E-05 45.0 7.5 43 136-187 60-102 (349)
428 COG1219 ClpX ATP-dependent pro 91.8 0.13 2.8E-06 48.0 2.7 54 100-153 45-114 (408)
429 PRK04841 transcriptional regul 91.8 1.5 3.2E-05 48.9 11.7 43 246-288 122-164 (903)
430 TIGR03819 heli_sec_ATPase heli 91.8 0.43 9.3E-06 46.2 6.4 63 111-185 154-217 (340)
431 TIGR02640 gas_vesic_GvpN gas v 91.8 0.32 7E-06 45.3 5.5 26 129-154 14-39 (262)
432 cd01131 PilT Pilus retraction 91.7 0.29 6.3E-06 43.4 4.9 22 139-161 4-25 (198)
433 PRK08760 replicative DNA helic 91.6 1.3 2.9E-05 45.0 10.1 111 137-258 230-352 (476)
434 TIGR03345 VI_ClpV1 type VI sec 91.6 1.9 4.2E-05 47.2 11.9 32 122-153 188-225 (852)
435 PF06733 DEAD_2: DEAD_2; Inte 91.6 0.13 2.9E-06 44.6 2.5 44 216-259 114-159 (174)
436 PF12846 AAA_10: AAA-like doma 91.6 0.31 6.7E-06 46.2 5.3 42 137-187 2-43 (304)
437 PRK08058 DNA polymerase III su 91.6 1.3 2.8E-05 42.8 9.5 40 243-283 108-147 (329)
438 CHL00176 ftsH cell division pr 91.6 0.98 2.1E-05 47.6 9.2 17 137-153 217-233 (638)
439 PF05729 NACHT: NACHT domain 91.5 1.8 3.9E-05 36.6 9.6 23 138-161 2-24 (166)
440 cd03239 ABC_SMC_head The struc 91.5 0.49 1.1E-05 41.2 6.0 41 244-284 115-156 (178)
441 KOG0737 AAA+-type ATPase [Post 91.5 0.5 1.1E-05 45.1 6.3 56 98-153 88-144 (386)
442 TIGR02525 plasmid_TraJ plasmid 91.5 0.34 7.4E-06 47.4 5.4 26 136-162 149-174 (372)
443 TIGR00763 lon ATP-dependent pr 91.4 1.2 2.7E-05 48.3 10.2 17 137-153 348-364 (775)
444 PRK10436 hypothetical protein; 91.4 0.41 8.9E-06 48.3 6.1 39 122-161 202-242 (462)
445 PRK06305 DNA polymerase III su 91.4 1.3 2.9E-05 44.7 9.8 19 138-156 41-59 (451)
446 PRK13764 ATPase; Provisional 91.4 0.29 6.2E-06 50.8 5.0 26 135-161 256-281 (602)
447 cd01128 rho_factor Transcripti 91.3 0.5 1.1E-05 43.5 6.0 20 132-151 12-31 (249)
448 PRK14701 reverse gyrase; Provi 91.2 1.2 2.6E-05 51.9 10.3 60 343-402 121-187 (1638)
449 TIGR03346 chaperone_ClpB ATP-d 91.2 1.3 2.7E-05 48.8 10.0 17 137-153 195-211 (852)
450 PRK07399 DNA polymerase III su 91.2 2.3 4.9E-05 40.7 10.6 54 228-284 108-161 (314)
451 cd01393 recA_like RecA is a b 91.0 0.79 1.7E-05 41.5 7.1 45 136-183 19-63 (226)
452 PRK10865 protein disaggregatio 90.9 1.1 2.3E-05 49.3 9.1 17 137-153 200-216 (857)
453 PHA03372 DNA packaging termina 90.9 3.6 7.8E-05 42.3 11.9 124 137-285 203-336 (668)
454 COG0552 FtsY Signal recognitio 90.8 8.2 0.00018 36.7 13.5 127 139-297 142-280 (340)
455 PRK12608 transcription termina 90.8 1.1 2.3E-05 43.6 7.9 37 124-161 118-157 (380)
456 TIGR02397 dnaX_nterm DNA polym 90.8 1.9 4E-05 42.1 10.0 23 138-161 38-60 (355)
457 COG2255 RuvB Holliday junction 90.8 0.86 1.9E-05 42.0 6.8 16 138-153 54-69 (332)
458 TIGR03878 thermo_KaiC_2 KaiC d 90.7 0.73 1.6E-05 42.8 6.6 36 136-180 36-71 (259)
459 PRK05636 replicative DNA helic 90.6 2.6 5.6E-05 43.2 11.0 111 137-258 266-388 (505)
460 PF02534 T4SS-DNA_transf: Type 90.5 0.39 8.5E-06 49.0 5.1 50 137-197 45-94 (469)
461 PRK14971 DNA polymerase III su 90.5 1.3 2.8E-05 46.5 8.9 41 243-285 119-159 (614)
462 COG0513 SrmB Superfamily II DN 90.4 1.2 2.5E-05 46.0 8.4 69 347-419 102-182 (513)
463 COG1132 MdlB ABC-type multidru 90.4 1.5 3.3E-05 45.9 9.5 39 243-281 481-519 (567)
464 PLN00020 ribulose bisphosphate 90.3 0.29 6.3E-06 47.1 3.6 16 138-153 150-165 (413)
465 cd01126 TraG_VirD4 The TraG/Tr 90.3 0.21 4.5E-06 49.5 2.8 48 138-196 1-48 (384)
466 TIGR02538 type_IV_pilB type IV 90.3 0.55 1.2E-05 48.9 6.0 39 122-161 300-340 (564)
467 COG1197 Mfd Transcription-repa 90.2 1.7 3.6E-05 47.9 9.6 100 328-427 626-732 (1139)
468 PF02367 UPF0079: Uncharacteri 90.2 0.29 6.2E-06 39.5 3.0 43 133-187 12-54 (123)
469 TIGR00602 rad24 checkpoint pro 90.1 1.6 3.4E-05 45.9 9.1 16 138-153 112-127 (637)
470 CHL00095 clpC Clp protease ATP 90.0 1.1 2.4E-05 49.1 8.2 17 137-153 201-217 (821)
471 TIGR02788 VirB11 P-type DNA tr 89.9 0.5 1.1E-05 45.2 5.0 20 133-152 141-160 (308)
472 KOG0732 AAA+-type ATPase conta 89.9 0.78 1.7E-05 50.1 6.8 57 96-153 259-316 (1080)
473 TIGR00416 sms DNA repair prote 89.9 1.6 3.5E-05 44.1 8.8 90 136-258 94-183 (454)
474 PRK09165 replicative DNA helic 89.8 3.5 7.5E-05 42.3 11.2 119 137-258 218-354 (497)
475 TIGR00150 HI0065_YjeE ATPase, 89.8 0.27 5.9E-06 40.3 2.6 43 134-188 20-62 (133)
476 KOG1133 Helicase of the DEAD s 89.8 17 0.00036 38.1 15.5 117 344-470 629-795 (821)
477 TIGR02533 type_II_gspE general 89.7 0.39 8.5E-06 48.9 4.2 39 122-161 226-266 (486)
478 COG1485 Predicted ATPase [Gene 89.6 6.5 0.00014 37.7 11.8 109 137-290 66-175 (367)
479 TIGR03743 SXT_TraD conjugative 89.5 1.6 3.4E-05 46.1 8.6 52 137-197 177-230 (634)
480 TIGR03345 VI_ClpV1 type VI sec 89.5 1.5 3.3E-05 48.0 8.8 15 139-153 599-613 (852)
481 PRK14970 DNA polymerase III su 89.5 1.2 2.5E-05 43.9 7.4 17 138-154 41-57 (367)
482 COG2812 DnaX DNA polymerase II 89.4 0.66 1.4E-05 47.1 5.5 39 243-285 117-156 (515)
483 KOG2004 Mitochondrial ATP-depe 89.4 0.76 1.7E-05 47.7 5.9 111 120-273 414-533 (906)
484 TIGR01054 rgy reverse gyrase. 89.3 1.3 2.7E-05 50.3 8.2 79 343-421 120-209 (1171)
485 TIGR02655 circ_KaiC circadian 89.3 0.75 1.6E-05 47.0 6.0 60 128-197 250-314 (484)
486 TIGR01420 pilT_fam pilus retra 89.2 0.6 1.3E-05 45.4 5.0 25 136-161 122-146 (343)
487 TIGR03880 KaiC_arch_3 KaiC dom 89.1 1.2 2.6E-05 40.3 6.6 52 136-197 16-67 (224)
488 PRK09087 hypothetical protein; 88.9 1.6 3.5E-05 39.6 7.3 38 247-286 89-126 (226)
489 COG0467 RAD55 RecA-superfamily 88.9 1 2.3E-05 41.8 6.3 53 135-197 22-74 (260)
490 PRK06321 replicative DNA helic 88.8 7.9 0.00017 39.4 12.8 111 137-258 227-349 (472)
491 PRK13897 type IV secretion sys 88.8 0.63 1.4E-05 48.5 5.0 49 137-196 159-207 (606)
492 TIGR03754 conj_TOL_TraD conjug 88.7 2 4.3E-05 45.0 8.5 53 137-198 181-235 (643)
493 TIGR02237 recomb_radB DNA repa 88.7 0.68 1.5E-05 41.4 4.7 38 136-182 12-49 (209)
494 PRK05595 replicative DNA helic 88.6 1.6 3.5E-05 44.1 7.8 112 136-258 201-324 (444)
495 PF08423 Rad51: Rad51; InterP 88.5 0.89 1.9E-05 42.1 5.4 52 129-183 26-82 (256)
496 KOG0058 Peptide exporter, ABC 88.4 3.3 7.2E-05 43.3 9.7 140 134-284 492-660 (716)
497 COG0542 clpA ATP-binding subun 88.4 3.4 7.4E-05 44.1 10.1 56 124-189 494-564 (786)
498 PF10412 TrwB_AAD_bind: Type I 88.4 0.86 1.9E-05 45.1 5.5 49 134-191 13-61 (386)
499 KOG0734 AAA+-type ATPase conta 88.2 3 6.6E-05 42.0 8.9 43 246-288 397-449 (752)
500 TIGR02655 circ_KaiC circadian 88.1 0.82 1.8E-05 46.7 5.4 54 136-198 21-74 (484)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-64 Score=484.25 Aligned_cols=365 Identities=39% Similarity=0.632 Sum_probs=335.6
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil 179 (475)
.|+.+++++++...++..+|..||++|.+.|+.++.|+|++..+.||||||++|++|++.++.+......++.+|.+|++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999875555556779999999
Q ss_pred eCCHHhHHHHHHHHHHhCCCCc--eEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011908 180 APTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 180 ~Pt~~La~Q~~~~l~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~ 257 (475)
+|||+||.|+.+.+.++..... ..|++||.+...+...+..+++|+|+||++|.++++...++++++.|+|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 9999999999999999987555 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHhC-CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHH
Q 011908 258 LSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336 (475)
Q Consensus 258 ~~~~~~~~~~~il~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (475)
++++|..+++.|+.++ ++..|+++.|||+|.+++.++..|+.++..+.+.+.........+.+....++...|...+..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 566689999999999999999999999999987665555555556666667778888999999
Q ss_pred HHHhhc--CCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCC
Q 011908 337 LITEHA--KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413 (475)
Q Consensus 337 ~~~~~~--~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~ 413 (475)
+++... .++++||||+++..|++++..+.. ++++..+||+.++.+|..+++.|++|+..|||||+++++|+|+|+|+
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 988874 567999999999999999999977 58999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhhh
Q 011908 414 LVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETCT 464 (475)
Q Consensus 414 ~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
+||+||+|.+..+|+ +||.||+|+.|.+++|++.++...+....+.++...
T Consensus 412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~ 464 (519)
T KOG0331|consen 412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAG 464 (519)
T ss_pred EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHcc
Confidence 999999999999999 999999999999999999999987766666554443
No 2
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=6.4e-63 Score=484.13 Aligned_cols=399 Identities=19% Similarity=0.270 Sum_probs=325.8
Q ss_pred Hhhhhhhh--hhcCCCCCCCcccccccCCccccccccccCCCCCCcchhhhhhhhccccccccCCCCCccCCCccCCCCC
Q 011908 30 ILHSHLAA--AKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDIS 107 (475)
Q Consensus 30 ~~~~~~~~--~~~~~~~~~~~~~~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (475)
...+++|+ .....+++..+|++.+|+|++..+...+++++.|+|++..|.+... .........+. .++..
T Consensus 177 ~l~e~lp~~l~~k~~l~~~~~al~~lH~P~~~~~~~~~~rRL~f~Ell~~ql~l~~-----~r~~~~~~~~~---~~~~~ 248 (677)
T COG1200 177 ELEELLPEELLEKYGLPSLDEALRTLHFPKDEEDLKRARRRLAFEELLALQLSLLL-----RRAKRQKRSGI---PLPAN 248 (677)
T ss_pred hccccCCHHHHhhccCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhccCC---CCCcc
Confidence 45667776 4567777899999999999999999999999999999999987431 11111111121 34566
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHhhhhhcC------CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeC
Q 011908 108 QDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~P 181 (475)
..+.+.+.+..+|+||..|++++.+|..+ ++.|+||++|||||++++++++..+ .+|+|+++|+|
T Consensus 249 ~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai---------~~G~Q~ALMAP 319 (677)
T COG1200 249 GELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI---------EAGYQAALMAP 319 (677)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH---------HcCCeeEEecc
Confidence 77888888888889999999999999976 5689999999999999999999999 44999999999
Q ss_pred CHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHh---hCC-CCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 182 TRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL---DYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 182 t~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~---~~~-~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
|+.||+||++.+.++++ ++++.+++|+.+.+.+...+ .+| .+|+||| |.+.++.+.|++++++|+||+|
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEeccc
Confidence 99999999999999997 77889999998877665443 344 9999999 8899999999999999999999
Q ss_pred cccccCcHHHHHHHHHhCCC-CCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHH
Q 011908 256 QMLSVGFAEDVEVILERLPQ-NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~~~-~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (475)
| ||..++..++..+. ++++++|||||+|++. +...+++...-.+ +..++.+.+..+......++..++
T Consensus 395 R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTL--Alt~fgDldvS~I----dElP~GRkpI~T~~i~~~~~~~v~ 463 (677)
T COG1200 395 R-----FGVHQRLALREKGEQNPHVLVMTATPIPRTL--ALTAFGDLDVSII----DELPPGRKPITTVVIPHERRPEVY 463 (677)
T ss_pred c-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHH--HHHHhccccchhh----ccCCCCCCceEEEEeccccHHHHH
Confidence 9 99999999999998 7999999999999544 4444444433322 223334455556666667888999
Q ss_pred HHHHHhhcCCCcEEEEeCChHHHH--------HHHHHHHc---cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 011908 335 GQLITEHAKGGKCIVFTQTKRDAD--------RLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 335 ~~~~~~~~~~~~~lVf~~~~~~~~--------~l~~~l~~---~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l 403 (475)
..+.+++.+|+|++|+||-+++.| .+++.|+. +++++.+||+|++++++++|++|++|+++|||||+++
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 999999999999999999998775 34444442 4679999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEecCCCCChhHHHhhccCCCCC---CCcEEEeeChhhhhhcCCCchhhh
Q 011908 404 ARGLDVPNVDLVELVVLERKEVQFLSTQISRPGK---SRVLSEMLDADLLSSQGSPLKEVE 461 (475)
Q Consensus 404 ~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g~---~~~~~~~~~~~~~~~~~~~~~~~~ 461 (475)
|+|||+||+++||++++.+++.++++|.+||+|| .+.|++++.+...+.....++.+.
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~ 604 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMR 604 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHH
Confidence 9999999999999999999999999666666665 578888888876444444444443
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-61 Score=439.86 Aligned_cols=348 Identities=32% Similarity=0.515 Sum_probs=321.3
Q ss_pred CccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCc
Q 011908 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 174 (475)
.+...+|.++++.+.+.+++.+.++..||++|+++||.++.|+|++..+.||||||.+|++|+++.++.. ...+
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~------p~~~ 130 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE------PKLF 130 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC------CCCc
Confidence 4456679999999999999999999999999999999999999999999999999999999999999873 3358
Q ss_pred eEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHH-hCCCCCCCccEEEE
Q 011908 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK-RNALNLSEVQFVVL 251 (475)
Q Consensus 175 ~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~-~~~~~~~~l~~vIi 251 (475)
.++|++|||+||.|+.+.|..++. ++.+.++.||.+...+...+.+.++|+|+||++|.+++. .+.+.+.+++++|+
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 899999999999999999999976 566788999999999999999999999999999999987 57788999999999
Q ss_pred eccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchh
Q 011908 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (475)
||||++++++|...+..|+..+|..+|.+++|||++..+..+...-+.+|..+... ......+.+.+++...+...|.
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~ 288 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVS--SKYQTVDHLKQTYLFVPGKDKD 288 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEecc--chhcchHHhhhheEeccccccc
Confidence 99999999999999999999999999999999999999999998888888888652 2334455667788888899999
Q ss_pred hHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC
Q 011908 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip 410 (475)
..|..++++. .+..+||||++...++.++-.|.. ++.+..+||.|+++.|...++.|++|..+|||||++.++|+|+|
T Consensus 289 ~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 289 TYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIP 367 (476)
T ss_pred hhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCC
Confidence 9999999987 568999999999999999999965 79999999999999999999999999999999999999999999
Q ss_pred CCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 411 NVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 411 ~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
.|++||+||.|....+|+ .||.||+|++|.++.+++..|.+
T Consensus 368 ~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 368 HVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVE 410 (476)
T ss_pred CceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhH
Confidence 999999999999999999 99999999999999999997775
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-58 Score=465.52 Aligned_cols=347 Identities=40% Similarity=0.668 Sum_probs=316.2
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCce-EE
Q 011908 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL-CL 177 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~-~l 177 (475)
..|+++++++.+++.+.+.||..||++|.++||.++.|+|++++++||||||++|++|+++.+... . ..... +|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~----~-~~~~~~aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS----V-ERKYVSAL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc----c-ccCCCceE
Confidence 568899999999999999999999999999999999999999999999999999999999997532 0 11222 99
Q ss_pred EEeCCHHhHHHHHHHHHHhCC---CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011908 178 VLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~ 254 (475)
|++||++||.|+++.+..+.. ++.+.+++||.+...+...+..+++|+||||+++++++.+..+.++++.++|+||+
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 999999999999999998775 56788999999999999888888999999999999999999999999999999999
Q ss_pred ccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcc-hhhH
Q 011908 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPSI 333 (475)
Q Consensus 255 H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~ 333 (475)
|+|++.+|...+..++..++.+.|++++|||++..+..+...++.+|..+.+...........+.++++.....+ |...
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887754444345667778877777665 9999
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~ 412 (475)
+..+++... ..++||||+++..++.++..|.. ++++..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 264 L~~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 264 LLKLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 999998764 44899999999999999999954 6999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChh-hhh
Q 011908 413 DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDAD-LLS 451 (475)
Q Consensus 413 ~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~-~~~ 451 (475)
++||+||.|.+...|+ +||+||+|+.|.++.|+.+. +..
T Consensus 343 ~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~ 384 (513)
T COG0513 343 SHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVK 384 (513)
T ss_pred ceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHH
Confidence 9999999999999999 99999999999999999975 554
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9e-58 Score=465.14 Aligned_cols=366 Identities=33% Similarity=0.504 Sum_probs=315.5
Q ss_pred CCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCC
Q 011908 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~ 172 (475)
..+.+...|+++++++.+++.|.+.+|.+||++|.++|+.++.++|+++++|||||||++|++|++..+..... ...+.
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~ 202 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGD 202 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCC
Confidence 34556678999999999999999999999999999999999999999999999999999999999988765322 12245
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
++++||++||++||.|+++.+.++.. ++.+.+++||.+...+...+..+++|+|+||++|.+++......++++++||
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 78999999999999999999999875 5677888999988888888888899999999999999998888899999999
Q ss_pred EeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcC-CCcEEEeecCCcccccCCeEEEEEeccCcc
Q 011908 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (475)
Q Consensus 251 iDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (475)
+||||++++++|...+..++..++++.|++++|||++..+..+...++. .+..+.+ +.........+..........+
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~v-g~~~l~~~~~i~q~~~~~~~~~ 361 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNV-GSLDLTACHNIKQEVFVVEEHE 361 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEE-CCCccccCCCeeEEEEEEechh
Confidence 9999999999999999999999999999999999999999888888775 3555543 2222222233444445555667
Q ss_pred hhhHHHHHHHhhc-CCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCC
Q 011908 330 KPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (475)
Q Consensus 330 k~~~l~~~~~~~~-~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~Gi 407 (475)
|...+..++.... .+.++||||++++.++.++..|. .++.+..+||++++++|..+++.|++|+.+|||||+++++|+
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 7778888887764 67899999999999999999996 468999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhh
Q 011908 408 DVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEV 460 (475)
Q Consensus 408 Dip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~ 460 (475)
|+|++++||+||.|.+...|+ +||+||.|+.|.+++|+++++...+...++.+
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l 496 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVL 496 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHH
Confidence 999999999999999999999 89999999999999999998876554444433
No 6
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-59 Score=404.50 Aligned_cols=365 Identities=32% Similarity=0.522 Sum_probs=328.7
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCce
Q 011908 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 175 (475)
.....|+++++.+++++.+.+.||.+|..+|++|++.|++|+|++.|+..|+|||.+|.+.+++.+.- .....|
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------~~r~tQ 97 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------SVRETQ 97 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------ccceee
Confidence 34567999999999999999999999999999999999999999999999999999999988887632 133578
Q ss_pred EEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011908 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE 253 (475)
++++.||++||.|+.+.+..+.. ++.+..+.||.+..+..+++..|.+++.|||+++++.+++..+....++++|+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 99999999999999999999887 4556668899999999999999999999999999999999999999999999999
Q ss_pred cccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcc-hhh
Q 011908 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE-KPS 332 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~ 332 (475)
++.+++.+|..++..+++.+|+..|++++|||+|.++......|..+|..+-+.. +......+.++++..+..+ |.+
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkr--deltlEgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKR--DELTLEGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEec--CCCchhhhhhheeeechhhhhHh
Confidence 9999999999999999999999999999999999999999999999999887633 3333445667777665554 888
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC
Q 011908 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 333 ~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~ 411 (475)
.|..+...+ .-.+++||||++...+.+.+.+.+ .+.+..+||+|++++|.+++.+|++|+.+||++|++-++|+|+|.
T Consensus 256 tLcdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~q 334 (400)
T KOG0328|consen 256 TLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQ 334 (400)
T ss_pred HHHHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcce
Confidence 888887766 457999999999999999999965 589999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhhhhhhhccCCC
Q 011908 412 VDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETCTMTWVAGLGM 473 (475)
Q Consensus 412 ~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (475)
++.||+||.|.+...|+ +||.||.||.|.++.|+..+|.. .++++|+++++-+...-|
T Consensus 335 VslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~----~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 335 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLR----ILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred eEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHH----HHHHHHHHHhhhcccccc
Confidence 99999999999999999 99999999999999999999998 688899999887765444
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7e-57 Score=449.54 Aligned_cols=352 Identities=33% Similarity=0.507 Sum_probs=306.6
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhcc-CCCCCce
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPL 175 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~-~~~~~~~ 175 (475)
+..+|+++++++.+++.+.+.||..||++|.++|+.++.|+|+++++|||||||++|++|+++.+....... ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 346788999999999999999999999999999999999999999999999999999999999987643221 1234689
Q ss_pred EEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011908 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE 253 (475)
++|++||++||.|+++.+..+.. ++.+..++||.....+...+..+++|+||||+++.+++....+.+++++++|+||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999888764 5778888999888877777878899999999999999988888899999999999
Q ss_pred cccccccCcHHHHHHHHHhCCC--CCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchh
Q 011908 254 ADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP 331 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~il~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (475)
+|++++++|...+..++..++. ..+.+++|||++..+..+...++.+|..+.+.... .....+..........+|.
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~--~~~~~i~~~~~~~~~~~k~ 243 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ--KTGHRIKEELFYPSNEEKM 243 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC--cCCCceeEEEEeCCHHHHH
Confidence 9999999999999999999874 45679999999999998888888888877654332 2223344444455556677
Q ss_pred hHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC
Q 011908 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip 410 (475)
..+..++... ...++||||++++.++.++..|. .++.+..+||+|++++|..+++.|++|+++|||||+++++|+|+|
T Consensus 244 ~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 244 RLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 7777777654 46799999999999999999995 478999999999999999999999999999999999999999999
Q ss_pred CCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 411 NVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 411 ~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
++++||+||+|.+...|+ +||+||.|+.|.+++|+++++..
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 365 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHH
Confidence 999999999999999999 99999999999999999998765
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-56 Score=450.67 Aligned_cols=349 Identities=34% Similarity=0.565 Sum_probs=305.2
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil 179 (475)
+|+++++++.+.+.|.+.++.+||++|.++++.+++++|+++++|||||||++|++|+++.+.............++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 57889999999999999999999999999999999999999999999999999999999998653322222234689999
Q ss_pred eCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011908 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 180 ~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~ 257 (475)
+||++||.|+++.+..+.. ++....++||.+...+...+..+++|+|+||++|.+++....+.+++++++|+||+|++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 9999999999999998765 56677889999888877777788999999999999999888888999999999999999
Q ss_pred cccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHH
Q 011908 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL 337 (475)
Q Consensus 258 ~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (475)
++++|...+..++..++...|++++|||+++.+..+...++.++..+.+.... .....+..+....+...+..++..+
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN--TASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--ccccceeEEEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877653322 1223344455555556667777777
Q ss_pred HHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE
Q 011908 338 ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVE 416 (475)
Q Consensus 338 ~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI 416 (475)
+... ...++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|++|+++|||||+++++|+|+|++++||
T Consensus 240 ~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 240 IGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred HHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 6553 457899999999999999999954 68999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 417 LVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 417 ~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
+|++|.+...|+ +||+||.|+.|.+++++.+++..
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 999999999999 89999999999999999998876
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.7e-56 Score=449.09 Aligned_cols=344 Identities=33% Similarity=0.583 Sum_probs=308.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
.+|+.+++++.+.+.+.+.||.+||++|.++++.+++++|+++++|||||||++|++|+++.+... ..+.+++|
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~li 77 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQALV 77 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEEE
Confidence 468899999999999999999999999999999999999999999999999999999999987431 23568999
Q ss_pred EeCCHHhHHHHHHHHHHhC---CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 179 l~Pt~~La~Q~~~~l~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
++||++||.|+++.++.+. +++++..++||.+...+...+..+++|+|+||+++.+++.+..+.+++++++|+||+|
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 9999999999999988765 3677888999999888888888889999999999999999888889999999999999
Q ss_pred cccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHH
Q 011908 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (475)
++++++|...+..++..+++..|++++|||+++.+..+...++.+|..+.+..... ...+...+......+|...+.
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD---LPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC---CCCeeEEEEEeCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887644322 233555556666666888888
Q ss_pred HHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 011908 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 336 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~ 414 (475)
.++... ...++||||++++.++.+++.|.. ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++
T Consensus 235 ~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 235 RLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 888765 457899999999999999999954 689999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhh
Q 011908 415 VELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 415 vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~ 452 (475)
||+++.|.+...|+ +||+||.|+.|.+++++.+++...
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~ 353 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQR 353 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHH
Confidence 99999999999999 899999999999999999987753
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.8e-56 Score=450.27 Aligned_cols=366 Identities=27% Similarity=0.431 Sum_probs=311.8
Q ss_pred CCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhcc-CCC
Q 011908 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRG 171 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~-~~~ 171 (475)
..+.+...|+.+++++.+++.|.+.||..||++|.++|+.++.|+|+++++|||||||++|++|++..+....... ...
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~ 194 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQ 194 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccccc
Confidence 4456777899999999999999999999999999999999999999999999999999999999999886533221 123
Q ss_pred CCceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEE
Q 011908 172 RNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~v 249 (475)
.+++++|++||++||.|+++.++.+.. ++....++||.....+...+..+++|+|+||++|.+++.+....+++++++
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 578999999999999999999888765 355677889888887777788889999999999999998888889999999
Q ss_pred EEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcc
Q 011908 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (475)
Q Consensus 250 IiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (475)
|+||+|++++++|...+..++..+ +++|++++|||+++.+..+...+..++..+...... .....+...........
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~--~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN--RPNKAVKQLAIWVETKQ 351 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC--CCCcceeEEEEeccchh
Confidence 999999999999999999999888 568999999999999999999888888777653322 22233444445555556
Q ss_pred hhhHHHHHHHhhc-CCCcEEEEeCChHHHHHHHHHHHc--cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q 011908 330 KPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 330 k~~~l~~~~~~~~-~~~~~lVf~~~~~~~~~l~~~l~~--~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~G 406 (475)
+...+..++.... ...++||||+++..++.++..|.. ++.+..+||+|++++|..+++.|++|+.+|||||+++++|
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 6666777776543 245899999999999999999953 6889999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhh
Q 011908 407 LDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVE 461 (475)
Q Consensus 407 iDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (475)
+|+|++++||+||+|.+...|+ +||+||.|+.|.+++|+++++...+....+.++
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 9999999999999999999999 899999999999999999988765544443333
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3e-55 Score=450.22 Aligned_cols=344 Identities=37% Similarity=0.572 Sum_probs=306.1
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
.+|+++++++.++++|.+.||.+||++|.++|+.+++++++++++|||||||++|++|+++.+... ..++++||
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~LI 79 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQILV 79 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeEEE
Confidence 358899999999999999999999999999999999999999999999999999999999887431 23678999
Q ss_pred EeCCHHhHHHHHHHHHHhC---CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 179 l~Pt~~La~Q~~~~l~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
++||++||.|+++.+..+. +++.+..++||.+...+...+..+++|+|+||+++.+++.+..+.++++++||+||+|
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999887764 4678888999998888888888889999999999999999888889999999999999
Q ss_pred cccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHH
Q 011908 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (475)
++++++|...+..++..++...|+++||||+|+.+..+...++.++..+.+.... .....+...+.......|...+.
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~--~~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV--TTRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--ccCCceEEEEEEechhhHHHHHH
Confidence 9999999999999999999999999999999999999999999988877654332 22233445555555667777788
Q ss_pred HHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 011908 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 336 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~ 414 (475)
.++... ...++||||+++..++.+++.|. .++.+..+||+|++.+|.+++++|++|+.+|||||+++++|||+|++++
T Consensus 238 ~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~ 316 (629)
T PRK11634 238 RFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISL 316 (629)
T ss_pred HHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCE
Confidence 777654 45689999999999999999995 4689999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 415 VELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 415 vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
||+||.|.+...|+ +||+||+|+.|.+++++.+.+..
T Consensus 317 VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~ 355 (629)
T PRK11634 317 VVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355 (629)
T ss_pred EEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHH
Confidence 99999999999999 99999999999999999987764
No 12
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-57 Score=410.93 Aligned_cols=415 Identities=31% Similarity=0.481 Sum_probs=355.5
Q ss_pred ccccccCCcccccccccc---CCCCCCcchhhhhhhh--ccccccccCCC-CCccCCCcc-CCCCCHHHHHHHHHCCCCC
Q 011908 49 DIIKSRFSAGTREFHAIS---RPLDFKSSIAWQHAQS--AVDDYVAYDDS-SKDEGLDIS-KLDISQDIVAALARRGISK 121 (475)
Q Consensus 49 ~~~~~h~p~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~-~~~l~~~l~~~l~~~~~~~ 121 (475)
..+....||-.+.+.... ..+.-.+...|..... ..+++...+.. -+++..+|+ .+...+++++.+++.||.+
T Consensus 163 ~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqK 242 (629)
T KOG0336|consen 163 KFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQK 242 (629)
T ss_pred hcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCC
Confidence 344455555555443322 3444455566665421 22333333332 344555665 4678899999999999999
Q ss_pred CcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh-CCCC
Q 011908 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-APSL 200 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~-~~~~ 200 (475)
|||+|.++||-+++|.|++..+.||+|||++|++|.+.++..++....+..++.+|+++||++||.|+.-+.+++ +.++
T Consensus 243 PtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ 322 (629)
T KOG0336|consen 243 PTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGL 322 (629)
T ss_pred CCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCc
Confidence 999999999999999999999999999999999999999888777777778999999999999999998777665 4588
Q ss_pred ceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEE
Q 011908 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280 (475)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l 280 (475)
..++++||.+..++.+.+..+.+|+++||++|.++...+.+++.++.|+|+|||++|++++|..++++++-.+.+++|++
T Consensus 323 ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtv 402 (629)
T KOG0336|consen 323 KSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTV 402 (629)
T ss_pred ceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHH
Q 011908 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRL 360 (475)
Q Consensus 281 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l 360 (475)
+.|||||+.++.++..|+++|..+.. |..+-.....+.+..++....+|...+..+++......++||||.++..|+.+
T Consensus 403 mTSATWP~~VrrLa~sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~L 481 (629)
T KOG0336|consen 403 MTSATWPEGVRRLAQSYLKEPMIVYV-GSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHL 481 (629)
T ss_pred eecccCchHHHHHHHHhhhCceEEEe-cccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhc
Confidence 99999999999999999999988864 44444334445566688888999999999999999999999999999999999
Q ss_pred HHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCC
Q 011908 361 AHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGK 437 (475)
Q Consensus 361 ~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~ 437 (475)
..-|. .++....+||+-.+.+|+..++.|++|+.+|||||+++++|+|+|+++||++||.|++...|+ +||.||+||
T Consensus 482 SSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr 561 (629)
T KOG0336|consen 482 SSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGR 561 (629)
T ss_pred cchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCC
Confidence 88774 578999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCcEEEeeChhhhhhcCCCchhhhhhh
Q 011908 438 SRVLSEMLDADLLSSQGSPLKEVETCT 464 (475)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
.|..++|++..|-..+.+.+.-+++.+
T Consensus 562 ~G~sis~lt~~D~~~a~eLI~ILe~ae 588 (629)
T KOG0336|consen 562 TGTSISFLTRNDWSMAEELIQILERAE 588 (629)
T ss_pred CcceEEEEehhhHHHHHHHHHHHHHhh
Confidence 999999999999988877776666654
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.5e-55 Score=446.73 Aligned_cols=358 Identities=32% Similarity=0.531 Sum_probs=305.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhc-cCCCCCceEE
Q 011908 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK-HGRGRNPLCL 177 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~-~~~~~~~~~l 177 (475)
.+|+++++++.+++.|.+.||..||++|.++|+.+++++|+++++|||||||++|++++++.+...... .....++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 458899999999999999999999999999999999999999999999999999999999988753321 1122357899
Q ss_pred EEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC-CCCCCCccEEEEecc
Q 011908 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEA 254 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~l~~vIiDE~ 254 (475)
|++||++|+.|+++.+.++.. ++.+..++|+.....+...+..+++|+|+||++|.+++.+. .+.+.+++++||||+
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 999999999999999998875 56678899999888877778778999999999999988765 466888999999999
Q ss_pred ccccccCcHHHHHHHHHhCCC--CCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhh
Q 011908 255 DQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (475)
Q Consensus 255 H~~~~~~~~~~~~~il~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (475)
|++++++|...+..++..++. ..|+++||||++..+..+...++.++..+...... .....+..........++..
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET--ITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc--ccccceeEEEEecCHHHHHH
Confidence 999999999999999999876 68999999999999999888888887766543221 12233444444555566677
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC
Q 011908 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 333 ~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~ 411 (475)
.+..++... .+.++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||+|+
T Consensus 247 ~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 777776553 567999999999999999999954 689999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhh
Q 011908 412 VDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETC 463 (475)
Q Consensus 412 ~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (475)
+++||+||.|.+...|+ +||+||.|+.|.|++|+.+.+... ++++++.
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~----l~~i~~~ 375 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMS----LPDIEAY 375 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHH----HHHHHHH
Confidence 99999999999999999 899999999999999999877653 4444443
No 14
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.2e-55 Score=412.44 Aligned_cols=355 Identities=35% Similarity=0.538 Sum_probs=322.8
Q ss_pred CCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhh--c-cCC
Q 011908 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE--K-HGR 170 (475)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~--~-~~~ 170 (475)
-+++..+|++.++|.++++.+...++..|+|+|+.++|..++++|.|..+.||||||++|++|++..+...+. . ...
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 3567778999999999999999999999999999999999999999999999999999999999999988662 2 234
Q ss_pred CCCceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 171 GRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
..|+.+++|+||++||+|+.++-.++.. ++.++.+.||....++.-.+..+|+|+|+||++|.+.+.+..+.+++..+
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qcty 399 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTY 399 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCce
Confidence 5689999999999999999999888765 57788899999999888888999999999999999999998888999999
Q ss_pred EEEeccccccccCcHHHHHHHHHhCCC-------------------------CCcEEEEeeecChhHHHHHHHhcCCCcE
Q 011908 249 VVLDEADQMLSVGFAEDVEVILERLPQ-------------------------NRQSMMFSATMPPWIRSLTNKYLKNPLT 303 (475)
Q Consensus 249 vIiDE~H~~~~~~~~~~~~~il~~~~~-------------------------~~~~l~~SAT~~~~~~~~~~~~~~~~~~ 303 (475)
+|+||+++|.+++|..++..+|..+|. ..|.+++|||+||.+..++..|+.+|..
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 999999999999999999999999853 1589999999999999999999999999
Q ss_pred EEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHH
Q 011908 304 VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQR 382 (475)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r 382 (475)
+.+.. .......+.+.....+..++...|..+++.. ...++|||+|+++.|+.+++.|. .+++|..|||+-++++|
T Consensus 480 vtig~--~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 480 VTIGS--AGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred EEecc--CCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 87633 3344556777777888888888899999886 45799999999999999999995 47999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 383 ERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 383 ~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
+..++.|++|..+|||||+++.+|||||||.+||+||++.+..+|. +||.||+|+.|.+++|++++|-.
T Consensus 557 e~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 557 ENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999998854
No 15
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-55 Score=406.08 Aligned_cols=344 Identities=32% Similarity=0.523 Sum_probs=307.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH
Q 011908 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 105 ~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
++++++++++...||..+||.|..+||.+++++|+++.++||||||++|++|++..+.....+.+.. ...++|++|||+
T Consensus 12 ~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vgalIIsPTRE 90 (567)
T KOG0345|consen 12 PLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVGALIISPTRE 90 (567)
T ss_pred CccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ceeEEEecCcHH
Confidence 4569999999999999999999999999999999999999999999999999999996644332211 246899999999
Q ss_pred hHHHHHHHHHH---hCCCCceEEEEcCCChhHHHHHhhC-CCCEEEEccHHHHHHHHhCCC--CCCCccEEEEecccccc
Q 011908 185 LAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNAL--NLSEVQFVVLDEADQML 258 (475)
Q Consensus 185 La~Q~~~~l~~---~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~--~~~~l~~vIiDE~H~~~ 258 (475)
||.|+.+.+.. .+++++..++.||.+..+....+.. +++|+||||++|.+++.+... .+.++.++|+||||+++
T Consensus 91 La~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLl 170 (567)
T KOG0345|consen 91 LARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLL 170 (567)
T ss_pred HHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHh
Confidence 99999876554 4568899999999998888777655 589999999999999988544 45599999999999999
Q ss_pred ccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHH
Q 011908 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI 338 (475)
Q Consensus 259 ~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 338 (475)
+.||...+..|+..+|++++.-++|||....+.++....+.+|..+.+........+.....++..++..+|...+.+++
T Consensus 171 dmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L 250 (567)
T KOG0345|consen 171 DMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLL 250 (567)
T ss_pred cccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998866665556777888999999999999999999
Q ss_pred HhhcCCCcEEEEeCChHHHHHHHHHHHc---cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEE
Q 011908 339 TEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415 (475)
Q Consensus 339 ~~~~~~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~v 415 (475)
... ..+++|||.+|....+.....+.. ...+..+||+|++..|..+++.|.+....+|+||+++++|+|+|++++|
T Consensus 251 ~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~V 329 (567)
T KOG0345|consen 251 NNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLV 329 (567)
T ss_pred hcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEE
Confidence 875 567999999999999999888854 5789999999999999999999999888999999999999999999999
Q ss_pred EecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhh
Q 011908 416 ELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 416 I~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
|+||+|.++..++ .||+||.||.|.+++|+.+.+.
T Consensus 330 vQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~ 366 (567)
T KOG0345|consen 330 VQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREE 366 (567)
T ss_pred EecCCCCChhHHHhhcchhhhccCccceEEEecccHH
Confidence 9999999999999 9999999999999999998544
No 16
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.1e-55 Score=409.53 Aligned_cols=354 Identities=30% Similarity=0.447 Sum_probs=323.2
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEE
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~l 177 (475)
...|+...+++...+++.++||.++|++|...++.++.|+|++..+.||||||++|++|+++.+.+..... .++..++
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~--r~~~~vl 158 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP--RNGTGVL 158 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC--CCCeeEE
Confidence 44578899999999999999999999999999999999999999999999999999999999998754332 3577899
Q ss_pred EEeCCHHhHHHHHHHHHHhCC---CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC-CCCCCCccEEEEec
Q 011908 178 VLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDE 253 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~l~~vIiDE 253 (475)
|++|||+||.|.+.+.+++.. ++.+..+.||.+...+.+.+.++++|+|+||++|.+.+++. .+.+.+++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 999999999999988887653 67788999999999999999999999999999999999874 45677889999999
Q ss_pred cccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCC-CcEEEeecCCcccccCCeEEEEEeccCcchhh
Q 011908 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (475)
||++++.+|...++.|+..+|..+|.+++|||.++.+..+....+.. +..+.............+.+.++..+...+..
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999999999999999999999999999999999999998887765 78888777777777788888888888888888
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC
Q 011908 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 333 ~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~ 411 (475)
.+..+++++....+++|||+|......+++.|.. .++|.-+||++++..|..+..+|.+.+..|||||++.++|+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 8999999887778999999999999999999964 589999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhc
Q 011908 412 VDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQ 453 (475)
Q Consensus 412 ~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~ 453 (475)
|++||.||+|.++..|+ +||.||.|..|.+++++.|++...+
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Fl 442 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFL 442 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHH
Confidence 99999999999999999 9999999999999999999988643
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.7e-54 Score=430.63 Aligned_cols=348 Identities=32% Similarity=0.540 Sum_probs=301.8
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil 179 (475)
+|+++++++.+++.|.+.|+.+||++|.++++.++.++|+++++|||||||++|++|+++.+...... ...+++++|+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~lil 79 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILIL 79 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999998764222 1235789999
Q ss_pred eCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011908 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 180 ~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~ 257 (475)
+||++||.|+++.+..+.. ++.+..++||.....+...+..+++|+|+||++|.+.+....+.+.++++||+||+|++
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 9999999999999988764 57788889999888887777778999999999999999988888999999999999999
Q ss_pred cccCcHHHHHHHHHhCCCCCcEEEEeeecCh-hHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEec-cCcchhhHHH
Q 011908 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSIIG 335 (475)
Q Consensus 258 ~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~ 335 (475)
++++|...+..+...++...|++++|||++. .+..+...++.++..+...... .....+...+... ....+...+.
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR--RERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc--ccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999888999999999985 5777777788787776653322 2222333333333 3456777777
Q ss_pred HHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 011908 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 336 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~ 414 (475)
.+++.. ...++||||+++++++.++..|.. ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++
T Consensus 238 ~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 238 HLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 777653 467999999999999999999964 689999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhh
Q 011908 415 VELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 415 vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~ 452 (475)
||+|+.|.+...|+ +||+||.|+.|.++++++..|...
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 99999999999999 889999999999999999888764
No 18
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.6e-53 Score=426.98 Aligned_cols=360 Identities=30% Similarity=0.501 Sum_probs=304.9
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhcc-CCCCCce
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPL 175 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~-~~~~~~~ 175 (475)
....|.++++++.+.+.|.+.|+.+||++|.++|+.+++|+|++++++||||||++|+++++..+.+..... ....+++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 345688899999999999999999999999999999999999999999999999999999999987643211 1122578
Q ss_pred EEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhh-CCCCEEEEccHHHHHHHHhCCCCCCCccEEEEe
Q 011908 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiD 252 (475)
+||++||++||.|+++.++.+.. ++.+..++||.....+...+. ..++|+|+||++|..++.+....++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 99999999999999999998865 567778889887766665554 458999999999999888888889999999999
Q ss_pred ccccccccCcHHHHHHHHHhCCC--CCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcch
Q 011908 253 EADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (475)
Q Consensus 253 E~H~~~~~~~~~~~~~il~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (475)
|+|++.+++|...+..+++.++. +.|++++|||++..+..+...+..++..+.+..... ...............++
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV--ASDTVEQHVYAVAGSDK 322 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC--CCCcccEEEEEecchhH
Confidence 99999999999999999998854 579999999999999999999998888776544322 12223334444555667
Q ss_pred hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCC
Q 011908 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (475)
Q Consensus 331 ~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDi 409 (475)
...+..++... ...++||||+++++++.+++.|.+ ++.+..+||+++.++|.++++.|++|+++|||||+++++|+|+
T Consensus 323 ~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 77787777654 456999999999999999999954 6889999999999999999999999999999999999999999
Q ss_pred CCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhh
Q 011908 410 PNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETC 463 (475)
Q Consensus 410 p~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (475)
|++++||+++.|.+..+|+ .||+||.|+.|.+++|++.+|... +..+++.
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~----~~~~~~~ 453 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQ----LPEIEEL 453 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHH----HHHHHHH
Confidence 9999999999999999999 889999999999999999887653 4444444
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-54 Score=389.27 Aligned_cols=351 Identities=32% Similarity=0.466 Sum_probs=315.7
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceE
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 176 (475)
...+|+.+++++.+.+.++..++.+|||+|..+||.|+.|+|++-++.||||||.+|.+|+++.+.++ ..|..+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFa 78 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFA 78 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceE
Confidence 34578999999999999999999999999999999999999999999999999999999999998663 447789
Q ss_pred EEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC----CCCCCCccEEE
Q 011908 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVV 250 (475)
Q Consensus 177 lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~----~~~~~~l~~vI 250 (475)
+|++||++||.|+.+.|..... ++++.+++||+..-.+...+.+.+|++|+||+++.+.+..+ ...+.+++++|
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 9999999999999999998876 66788899999988888888889999999999999988765 34578899999
Q ss_pred EeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcch
Q 011908 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (475)
Q Consensus 251 iDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (475)
+|||+++++..|.+.++.+...+|..+|.+++|||++..+..+...-...+...........+....+...++.++...|
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 99999999999999999999999999999999999988777665554444444444444566667778888999999999
Q ss_pred hhHHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCC
Q 011908 331 PSIIGQLITEHAK--GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (475)
Q Consensus 331 ~~~l~~~~~~~~~--~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~Gi 407 (475)
..++..+++...+ .+.++||+++..+|+.++..|.. ++.+..+||.|++.+|...+.+|+++..+|||||+++++|+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 9999999987655 67899999999999999999965 68999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhc
Q 011908 408 DVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQ 453 (475)
Q Consensus 408 Dip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~ 453 (475)
|||.|+.||++|.|+.+..|+ .||..|+||.|.++.++++.|.+..
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~ 366 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELL 366 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHH
Confidence 999999999999999999999 9999999999999999999998743
No 20
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-55 Score=388.35 Aligned_cols=368 Identities=28% Similarity=0.496 Sum_probs=331.0
Q ss_pred cCCCCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccC
Q 011908 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (475)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~ 169 (475)
.++.....+..|+++.+..+++..+.+.||..|+|+|.++||.++.|+|++..+..|+|||.+|.+|+++.+..
T Consensus 76 t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~------ 149 (459)
T KOG0326|consen 76 TEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP------ 149 (459)
T ss_pred ccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc------
Confidence 34455667888999999999999999999999999999999999999999999999999999999999998833
Q ss_pred CCCCceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCcc
Q 011908 170 RGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 170 ~~~~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~ 247 (475)
..+..|+++++||++||-|..+..+++.+ ++.+.+.+||++.+.....+....+++||||++++++.++..-.+++..
T Consensus 150 ~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 150 KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhce
Confidence 34577899999999999999888888776 4567778899999888888888899999999999999998888899999
Q ss_pred EEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccC
Q 011908 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327 (475)
Q Consensus 248 ~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (475)
++|+||||.+++..|...+..++..+|+++|++++|||.|-.+..+...++..|..+.+ .++-....+.+++....+
T Consensus 230 ~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INL---M~eLtl~GvtQyYafV~e 306 (459)
T KOG0326|consen 230 ILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINL---MEELTLKGVTQYYAFVEE 306 (459)
T ss_pred EEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeeh---hhhhhhcchhhheeeech
Confidence 99999999999999999999999999999999999999999999999999999999986 333445567778888888
Q ss_pred cchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q 011908 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 328 ~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~G 406 (475)
.+|.-.+..+..++ +-.+.+|||||....|.+++.+.+ ++.|..+|++|.++.|.+++..|++|.++.||||+.+.+|
T Consensus 307 ~qKvhCLntLfskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRG 385 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRG 385 (459)
T ss_pred hhhhhhHHHHHHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcc
Confidence 89999999888776 467999999999999999998855 7999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhhhhhhhccC
Q 011908 407 LDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETCTMTWVAGL 471 (475)
Q Consensus 407 iDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (475)
||++++++||++|.|++...|+ +||.||.|.-|.++.+++.+|.. .+..+|+..-+.+..+
T Consensus 386 IDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf----~L~~IE~eLGtEI~pi 448 (459)
T KOG0326|consen 386 IDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRF----NLYRIEQELGTEIKPI 448 (459)
T ss_pred cccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhh----hHHHHHHHhccccccC
Confidence 9999999999999999999999 99999999999999999998887 4666766655544443
No 21
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-55 Score=406.90 Aligned_cols=358 Identities=31% Similarity=0.472 Sum_probs=316.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEE
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~l 177 (475)
..+|..++|+..+++++...||..|||+|..+||..+-|+|++.++.||||||.+|++|++..++-.+.+. ...+||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~---~~TRVL 256 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV---AATRVL 256 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC---cceeEE
Confidence 34688999999999999999999999999999999999999999999999999999999999987654432 245799
Q ss_pred EEeCCHHhHHHHHHHHHHhC--CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh-CCCCCCCccEEEEecc
Q 011908 178 VLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEA 254 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~l~~vIiDE~ 254 (475)
|++||++||.|++...+++. .++.+.++.||.+.+.+...++..++|+|+||++|.+++.+ ..+.++++.++|+||+
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 99999999999998888764 37889999999999999999999999999999999998876 5678999999999999
Q ss_pred ccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEE-eccCcchhhH
Q 011908 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI-ATSMYEKPSI 333 (475)
Q Consensus 255 H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~ 333 (475)
|||++.+|..++..|++.+++++|.+++|||++..+..++..-+..|..+.+.+.......-......+ .....++..+
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH
Confidence 999999999999999999999999999999999999999999999999998755544433222222222 2344567778
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~ 412 (475)
+..++.+.. ...++||+.+++.|.++.-.|. -+++++-+||.+++.+|.+.++.|++++++|||||+++++|+||+++
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 888887764 5789999999999999999885 47899999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchh
Q 011908 413 DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKE 459 (475)
Q Consensus 413 ~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~ 459 (475)
..||+|++|.+...|+ .||..|+||.|.+++|+..++.+.+...++.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999 9999999999999999999988755544443
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-54 Score=405.07 Aligned_cols=358 Identities=29% Similarity=0.440 Sum_probs=326.4
Q ss_pred cCCCCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccC
Q 011908 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (475)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~ 169 (475)
+.+........|.+++++....++|++.+|..+|.+|+++|+..+.|+|++..+.||||||++|++|+++.+. ..+|+
T Consensus 60 y~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~--r~kWs 137 (758)
T KOG0343|consen 60 YAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALY--RLKWS 137 (758)
T ss_pred HHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHH--HcCCC
Confidence 3344445566799999999999999999999999999999999999999999999999999999999999994 45677
Q ss_pred CCCCceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC-CCCCCCc
Q 011908 170 RGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEV 246 (475)
Q Consensus 170 ~~~~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~l 246 (475)
...|.-+||+.|||+||.|+++.+.+.+. ++...++.||.+.+.+...+. ..+|+||||++|+..+... .+..+++
T Consensus 138 ~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 138 PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 77788999999999999999999999765 677888999999777666554 4799999999999888764 5678899
Q ss_pred cEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEecc
Q 011908 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (475)
Q Consensus 247 ~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (475)
.++|+|||++++++||...+..|+..+|+.+|.+++|||.+..+..+++.-+.+|..+.+........+..+.++++..+
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~ 296 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP 296 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999876666778888899999999
Q ss_pred CcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc---cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 011908 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 327 ~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l 403 (475)
..+|+.+|..+++.+. ..++|||+.|.+++..+++.+.+ ++.+..+||+|++..|..++.+|...+.-||+||+++
T Consensus 297 l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~ 375 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVA 375 (758)
T ss_pred hhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhh
Confidence 9999999999999984 56999999999999999998865 6889999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 404 ARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 404 ~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
++|+|+|.|++||.+|+|.+...|+ .||..|.+..|.+.+++.|.+.+
T Consensus 376 aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 376 ARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEE 425 (758)
T ss_pred hccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHH
Confidence 9999999999999999999999999 89999999999999999998743
No 23
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.1e-52 Score=416.42 Aligned_cols=363 Identities=32% Similarity=0.490 Sum_probs=304.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEE
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~l 177 (475)
..+|+++++++.+.+.+.+.++.+|+++|.++++.+.++++.++++|||||||++|+++++..+.. ...+.+++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------~~~~~~~l 100 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------DLNACQAL 100 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC------CCCCceEE
Confidence 356888999999999999999999999999999999999999999999999999999999987732 12367899
Q ss_pred EEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
|++||++|+.|+++.+..++. +.....+.|+.........+..+++|+|+||+++.+.+.+....+++++++|+||+|
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 999999999999999888765 344556778887777777777788999999999999988877889999999999999
Q ss_pred cccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccC-cchhhHH
Q 011908 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM-YEKPSII 334 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l 334 (475)
++.+.++...+..++..++++.|++++|||+++....+...++.++..+...... .....+..++...+. ..+...+
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 258 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE--LTLEGIRQFYVAVEKEEWKFDTL 258 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC--cccCCceEEEEecChHHHHHHHH
Confidence 9999889999999999999999999999999998888888888887766543321 122233344333332 2344555
Q ss_pred HHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCC
Q 011908 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD 413 (475)
Q Consensus 335 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~ 413 (475)
..+.+.. ...+++|||+++++++.+++.|.. ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+++
T Consensus 259 ~~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 259 CDLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 5555543 456899999999999999999964 58899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhhhhhhhccCCC
Q 011908 414 LVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETCTMTWVAGLGM 473 (475)
Q Consensus 414 ~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (475)
+||+++.|.+...|+ +||+||.|+.|.|+.++++++.. .++.+++.....+.+..+
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~----~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIE----QLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHH----HHHHHHHHHCCcccccCc
Confidence 999999999999998 88888888899999999998887 355667766655555443
No 24
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.1e-53 Score=443.41 Aligned_cols=384 Identities=18% Similarity=0.242 Sum_probs=292.7
Q ss_pred hhhhhhh--hhcCCCCCCCcccccccCCccccccccccCCCCCCcchhhhhhhhccccccccCCCCCccCCCccCCCCCH
Q 011908 31 LHSHLAA--AKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQ 108 (475)
Q Consensus 31 ~~~~~~~--~~~~~~~~~~~~~~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (475)
..+++|. +....|+++.+|++.+|||.+.++.+.+++++.|+|++.+|............ . ... ......
T Consensus 177 ~~e~lp~~~~~~~~l~~~~~al~~iH~P~~~~~~~~a~~rl~~~El~~~q~~~~~~~~~~~~---~--~~~---~~~~~~ 248 (681)
T PRK10917 177 LPELLPEELLEKYGLLSLAEALRAIHFPPSDEDLHPARRRLKFEELFALQLSLLLLRAGRRS---K--KAG---PLPYDG 248 (681)
T ss_pred CCCCCCHHHHHhcCCCCHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--cCC---CCCCCh
Confidence 3455555 45568899999999999999999999999999999999999764211111110 0 111 112346
Q ss_pred HHHHHHHHCCCCCCcHHHHHHhhhhhcC------CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCC
Q 011908 109 DIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 109 ~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt 182 (475)
.+.+.+.+..+++||++|.++++.|.++ ++++++||||||||++|+++++..+. +|.+++||+||
T Consensus 249 ~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---------~g~q~lilaPT 319 (681)
T PRK10917 249 ELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---------AGYQAALMAPT 319 (681)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---------cCCeEEEEecc
Confidence 6777777777779999999999999887 47999999999999999999998873 38899999999
Q ss_pred HHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHH---HhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccc
Q 011908 183 RELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (475)
Q Consensus 183 ~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~---~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~ 256 (475)
++||.|+++.++++++ ++++.+++|+.+...+.. .+.. .++|+||||+.+. ..+.+++++++|+||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEEEechhh
Confidence 9999999999999886 477888999988655433 3334 4999999987664 345688999999999999
Q ss_pred ccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHH
Q 011908 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQ 336 (475)
Q Consensus 257 ~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (475)
|+...+..+...+..+++++|||||+|....+.. ..+.....+...... ...+... ......+...+..
T Consensus 395 -----fg~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~--r~~i~~~--~~~~~~~~~~~~~ 463 (681)
T PRK10917 395 -----FGVEQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPG--RKPITTV--VIPDSRRDEVYER 463 (681)
T ss_pred -----hhHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCC--CCCcEEE--EeCcccHHHHHHH
Confidence 6677777777777789999999999886554443 233222222111110 1112222 2233344555666
Q ss_pred HHHhhcCCCcEEEEeCChHH--------HHHHHHHHHcc---CCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 011908 337 LITEHAKGGKCIVFTQTKRD--------ADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (475)
Q Consensus 337 ~~~~~~~~~~~lVf~~~~~~--------~~~l~~~l~~~---~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~ 405 (475)
+.+...++++++|||+.+++ ++.+++.|... +++..+||+|++++|.+++++|++|+.+|||||+++++
T Consensus 464 i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 464 IREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 66666788999999997654 45566666543 57999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEecCCCCChhHHH---hhccCCCCCCCcEEEeeCh
Q 011908 406 GLDVPNVDLVELVVLERKEVQFL---STQISRPGKSRVLSEMLDA 447 (475)
Q Consensus 406 GiDip~~~~vI~~~~~~~~~~~~---~gR~gR~g~~~~~~~~~~~ 447 (475)
|+|+|++++||++++|+++.+++ .||+||.|..|.|++++..
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 99999999999999999988887 5666666677899999953
No 25
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2e-52 Score=433.58 Aligned_cols=383 Identities=21% Similarity=0.232 Sum_probs=283.6
Q ss_pred hhhhhh--hhcCCCCCCCcccccccCCccccccccccCCCCCCcchhhhhhhhccccccccCCCCCccCCCccCCCCCHH
Q 011908 32 HSHLAA--AKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQD 109 (475)
Q Consensus 32 ~~~~~~--~~~~~~~~~~~~~~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (475)
.+++|. +....|+++.+|++.+|||.+.++.+.+++++.|+|++.+|.......... ....... .+.....
T Consensus 151 ~e~lp~~~~~~~~l~~~~~al~~iH~P~~~~~~~~a~~rl~~~E~~~~ql~l~~~~~~~----~~~~~~~---~~~~~~~ 223 (630)
T TIGR00643 151 EDPLPEELREKYGLLSLEDALRAIHFPKTLSLLELARRRLIFDEFFYLQLAMLARRLGE----KQQFSAP---PANPSEE 223 (630)
T ss_pred CCCCCHHHHhhcCCCCHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcCCC---CCCCChH
Confidence 455555 445689999999999999999999999999999999999997642111100 0000111 1223344
Q ss_pred HHHHHHHCCCCCCcHHHHHHhhhhhcC------CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 110 IVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 110 l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
+...+.+..+++||++|.+++++|.++ ++++++||||||||++|+++++..+. +|.+++||+||+
T Consensus 224 ~~~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---------~g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---------AGYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---------cCCcEEEECCHH
Confidence 555555544558999999999999876 36899999999999999999998873 388999999999
Q ss_pred HhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHH---HhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011908 184 ELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 184 ~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~---~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~ 257 (475)
+||.|+++.++++++ ++++.+++|+.+...+.. .+.. .++|+||||+.+. ..+.+.+++++|+||+|+
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-----~~~~~~~l~lvVIDEaH~- 368 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-----EKVEFKRLALVIIDEQHR- 368 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-----ccccccccceEEEechhh-
Confidence 999999999999887 578889999988665433 2333 4899999988664 345678999999999999
Q ss_pred cccCcHHHHHHHHHhCCC---CCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHH
Q 011908 258 LSVGFAEDVEVILERLPQ---NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334 (475)
Q Consensus 258 ~~~~~~~~~~~il~~~~~---~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (475)
|+...+..+..... .+++++|||||+|....+.. ..+.....+...... ...+... ......+...+
T Consensus 369 ----fg~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~--r~~i~~~--~~~~~~~~~~~ 438 (630)
T TIGR00643 369 ----FGVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPG--RKPITTV--LIKHDEKDIVY 438 (630)
T ss_pred ----ccHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCC--CCceEEE--EeCcchHHHHH
Confidence 55555555554444 78999999999885544332 222211111110000 1112222 22333345556
Q ss_pred HHHHHhhcCCCcEEEEeCChH--------HHHHHHHHHHc---cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 011908 335 GQLITEHAKGGKCIVFTQTKR--------DADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 335 ~~~~~~~~~~~~~lVf~~~~~--------~~~~l~~~l~~---~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l 403 (475)
..+.+...++.+++|||+.++ .++.+++.|.+ ++.+..+||+|++++|.+++++|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 666666677899999999874 45566666653 5679999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEecCCCCChhHHH---hhccCCCCCCCcEEEeeC
Q 011908 404 ARGLDVPNVDLVELVVLERKEVQFL---STQISRPGKSRVLSEMLD 446 (475)
Q Consensus 404 ~~GiDip~~~~vI~~~~~~~~~~~~---~gR~gR~g~~~~~~~~~~ 446 (475)
++|+|+|++++||++++++++.+++ +||+||.|+.|.|++++.
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999999888877 566666667889999983
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-52 Score=391.43 Aligned_cols=355 Identities=28% Similarity=0.437 Sum_probs=300.0
Q ss_pred cCCCccCCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCce
Q 011908 97 EGLDISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 175 (475)
....|..+++++.+.+.|+. +++..||.+|.++||.++.|+|+++.++||||||++|++|+++.+.....+..+..|+-
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 44568999999999999987 58999999999999999999999999999999999999999999998777766788999
Q ss_pred EEEEeCCHHhHHHHHHHHHHhCCCCc---eEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh-CCCCCCCccEEEE
Q 011908 176 CLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVL 251 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~l~~vIi 251 (475)
+|||+|||+||.|+|+.++++...+. -..+.||...+.+...+++|++|+||||++|.+.+++ ..+.++++.++|+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 99999999999999999999876443 3457899998888899999999999999999998877 5678899999999
Q ss_pred eccccccccCcHHHHHHHHHhCC-------------CCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCccc-----
Q 011908 252 DEADQMLSVGFAEDVEVILERLP-------------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK----- 313 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~il~~~~-------------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 313 (475)
||+|++++.||...+..|+..+. ...|.+++|||++..+..+...-+.+|..|.+.......
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 99999999999999999988772 236789999999999999999999999999732211111
Q ss_pred ------------------ccCCeEEEEEeccCcchhhHHHHHHHhh---cCCCcEEEEeCChHHHHHHHHHHHc------
Q 011908 314 ------------------LADGISLYSIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK------ 366 (475)
Q Consensus 314 ------------------~~~~~~~~~~~~~~~~k~~~l~~~~~~~---~~~~~~lVf~~~~~~~~~l~~~l~~------ 366 (475)
.+..+.+.+...+..-+.-.|..++... ....++|||..+.+.++.=+..|..
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 1111223344444444444444444432 2245899999999988877766633
Q ss_pred -----------------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH-
Q 011908 367 -----------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL- 428 (475)
Q Consensus 367 -----------------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~- 428 (475)
+.++.-+||.|.+++|..+++.|...+-.||+||+++++|+|+|+|++||.||+|.+..+|+
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylH 533 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLH 533 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHH
Confidence 23577899999999999999999999999999999999999999999999999999999999
Q ss_pred -hhccCCCCCCCcEEEeeChhhhh
Q 011908 429 -STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 429 -~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
+||..|+|..|.+++|+.|.+.+
T Consensus 534 RvGRTARaG~kG~alLfL~P~Eae 557 (708)
T KOG0348|consen 534 RVGRTARAGEKGEALLFLLPSEAE 557 (708)
T ss_pred HhhhhhhccCCCceEEEecccHHH
Confidence 99999999999999999998876
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-51 Score=385.15 Aligned_cols=370 Identities=33% Similarity=0.498 Sum_probs=335.4
Q ss_pred CCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCC
Q 011908 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~ 172 (475)
....+...|+.+++++.|+.+..+..|.+||++|.+++|..+.+++++-.+.||||||.+|+.+++.++....+-.+ ++
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~-g~ 295 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKP-GE 295 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcC-CC
Confidence 34556678999999999999999999999999999999999999999999999999999999999999977655443 67
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
||..+|+|||++||.|++.+.+++++ ++++++++||....++...+..++.|+|+||++|.++++.+..++.++.++|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 99999999999999999999999865 7889999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcch
Q 011908 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (475)
Q Consensus 251 iDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (475)
+||+++|++.+|..+++.|...+.+++|.|++|||.+..+..+++.++.+|..+... +-.....+..+...+..+...|
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg-~vgean~dITQ~V~V~~s~~~K 454 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG-EVGEANEDITQTVSVCPSEEKK 454 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe-ehhccccchhheeeeccCcHHH
Confidence 999999999999999999999999999999999999999999999999999888643 3333333444555666666777
Q ss_pred hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCC
Q 011908 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (475)
Q Consensus 331 ~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDi 409 (475)
...+..-+-.....+++|+|+.-...++.++..|+ +++++..+||+|.+.+|.+++.+|+.+...|||+|++..+|+||
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI 534 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDI 534 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCc
Confidence 77666666566677899999999999999999995 57999999999999999999999999999999999999999999
Q ss_pred CCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhhh
Q 011908 410 PNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETCT 464 (475)
Q Consensus 410 p~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
|++..||+||.-++...+. +||.||+|..|.+++++++.|...+...++.+|.+.
T Consensus 535 ~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ag 591 (731)
T KOG0339|consen 535 PSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAG 591 (731)
T ss_pred cccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhcc
Confidence 9999999999999999888 999999999999999999999999999999998876
No 28
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-52 Score=395.68 Aligned_cols=372 Identities=34% Similarity=0.543 Sum_probs=313.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhc----cCCCCC
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK----HGRGRN 173 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~----~~~~~~ 173 (475)
...|++-.+.+.+...++..++..|||+|+.+|+.+..|++.+.+|+||||||.+|++|++..+...... ......
T Consensus 73 i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 73 IPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred cccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 3367777888999999999999999999999999999999999999999999999999999999875432 111235
Q ss_pred ceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011908 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 174 ~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIi 251 (475)
++++|++||++|+.|++++.+++.. .+.....+||.+...+...+..+++|+|+||++|.+++....+.+.+++++|+
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 8999999999999999999999765 66788899999999999999999999999999999999999999999999999
Q ss_pred eccccccc-cCcHHHHHHHHHhCCC----CCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEecc
Q 011908 252 DEADQMLS-VGFAEDVEVILERLPQ----NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (475)
Q Consensus 252 DE~H~~~~-~~~~~~~~~il~~~~~----~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (475)
||+++|++ .+|+..++.++..... +.|.+++|||.|..+..++..++.+.....-++.. ......+.+......
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv-g~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV-GSTSENITQKILFVN 311 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee-ccccccceeEeeeec
Confidence 99999999 9999999999988854 78999999999999999887777663222111111 122233444555566
Q ss_pred CcchhhHHHHHHHhhc---CCC-----cEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEE
Q 011908 327 MYEKPSIIGQLITEHA---KGG-----KCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (475)
Q Consensus 327 ~~~k~~~l~~~~~~~~---~~~-----~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vL 397 (475)
..+|...+..++.... ..+ .++|||.+++.+..++..|.. ++++..+||.-++.+|.+.+..|++|++.+|
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 6667777777665433 233 899999999999999999954 6899999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhh---hhcCCCchhhhhhhhhhhcc
Q 011908 398 IATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLL---SSQGSPLKEVETCTMTWVAG 470 (475)
Q Consensus 398 vaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 470 (475)
|||+++++|+|+|+|+|||+||+|....+|+ +||+||+|+.|.+..|++..+. +.+...+.+-++..+.|+..
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 9999999999999999999999999999999 9999999999999999995544 33334455555566888876
No 29
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-51 Score=379.44 Aligned_cols=353 Identities=25% Similarity=0.388 Sum_probs=318.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEE
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~l 177 (475)
..+|+++++++.+++++.+.||.+||-+|..+||.++.|+|++..+.||||||.+|++|+++.+++.........++.++
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 36899999999999999999999999999999999999999999999999999999999999999877665567799999
Q ss_pred EEeCCHHhHHHHHHHHHHhCC----CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC-CCCCCccEEEEe
Q 011908 178 VLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLD 252 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-~~~~~l~~vIiD 252 (475)
|++||++||+|+|..+.++.. .+++.-+..+++.......+.+.++|+|+||++++.++.... ..+..++++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 999999999999998877542 555555666666666667777789999999999999988766 567889999999
Q ss_pred ccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhh
Q 011908 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS 332 (475)
Q Consensus 253 E~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (475)
|+|-++..||...++.+...+|+..|.++||||+..++..+...++.+|..+.+..... ...+.+.++.+.++..+|.-
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el-~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGEL-PNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccC-CCcccceEEEEEeccchhHH
Confidence 99999999999999999999999999999999999999999999999999988755443 36778889999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec----------
Q 011908 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD---------- 401 (475)
Q Consensus 333 ~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~---------- 401 (475)
++..+++-..-.+++|||+|+++.+.++.-.|.. +++..+++|.|+...|..++++|..|-++++|||+
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 9998887654578999999999999999999865 78999999999999999999999999999999999
Q ss_pred -------------------------ccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 402 -------------------------VAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 402 -------------------------~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
-.++|||+.+|.+|++||+|.+..+|+ +||.+|++++|.+..|+.|++..
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 135899999999999999999999999 99999999999999999998775
No 30
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.7e-51 Score=372.88 Aligned_cols=356 Identities=29% Similarity=0.507 Sum_probs=305.9
Q ss_pred CCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhc--cCC
Q 011908 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK--HGR 170 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~--~~~ 170 (475)
..+.+..+|.++.+|..+++.|++.|+.+|||+|.+-+|.+++|+|.+-.+-||||||++|.+|++-..++.... ..+
T Consensus 164 ~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~ 243 (610)
T KOG0341|consen 164 DIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFAR 243 (610)
T ss_pred CCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcccc
Confidence 345566789999999999999999999999999999999999999999999999999999999999887765432 335
Q ss_pred CCCceEEEEeCCHHhHHHHHHHHHHhC--------CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCC
Q 011908 171 GRNPLCLVLAPTRELAKQVEKEFHESA--------PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~Q~~~~l~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~ 242 (475)
+.||-.||+||+++||.|.++-+..++ |.++..++.||.+..++......+.+|+|+||++|.+.+..+...
T Consensus 244 ~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~s 323 (610)
T KOG0341|consen 244 GEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMS 323 (610)
T ss_pred CCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhcc
Confidence 679999999999999999998777654 356778889999999999999999999999999999999998888
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEE
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (475)
+.-..|+.+||+++|.+.+|.+.++.++..+...+|.+++|||+|..+..++...+-.|..+.+....... .+-++..
T Consensus 324 Ld~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAs-ldViQev- 401 (610)
T KOG0341|consen 324 LDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAAS-LDVIQEV- 401 (610)
T ss_pred HHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccc-hhHHHHH-
Confidence 88899999999999999999999999999999999999999999999999999999999999863322221 1111111
Q ss_pred EeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHH-HccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 011908 323 IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401 (475)
Q Consensus 323 ~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l-~~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~ 401 (475)
-......|.-.+..-++. ...+++|||..+.+.+.+.++| -++..+..+||+-++++|...++.|+.|+-+|||||+
T Consensus 402 EyVkqEaKiVylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD 479 (610)
T KOG0341|consen 402 EYVKQEAKIVYLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD 479 (610)
T ss_pred HHHHhhhhhhhHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEec
Confidence 011122233333333322 2568999999999999999988 5789999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhh
Q 011908 402 VAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 402 ~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~ 452 (475)
+++.|+|+|++.|||+||+|.....|+ +||.||.|++|.+.+|++......
T Consensus 480 VASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~es 532 (610)
T KOG0341|consen 480 VASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEES 532 (610)
T ss_pred chhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHH
Confidence 999999999999999999999999999 999999999999999999765433
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-50 Score=379.20 Aligned_cols=362 Identities=32% Similarity=0.472 Sum_probs=296.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC-CcEEEEccCCCChhHHhHHHHHHHHHhhhh-----ccCCC
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNE-----KHGRG 171 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~~-----~~~~~ 171 (475)
...|..+.++..++++|.+.||..||++|..++|++..| .|++..|.||||||++|-+|++..+..... .....
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 345788999999999999999999999999999999998 799999999999999999999995544211 01112
Q ss_pred CCce--EEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCC---CCC
Q 011908 172 RNPL--CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL---NLS 244 (475)
Q Consensus 172 ~~~~--~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~---~~~ 244 (475)
.+++ +||++|||+||.|+.+-|....+ ++.+..++||.....+.+.+...++|+|+||++|+.++..... .++
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 2344 99999999999999998887664 7888899999999999999999999999999999999987654 577
Q ss_pred CccEEEEeccccccccCcHHHHHHHHHhCC-----CCCcEEEEeeecCh---------------------hHHHHHHH--
Q 011908 245 EVQFVVLDEADQMLSVGFAEDVEVILERLP-----QNRQSMMFSATMPP---------------------WIRSLTNK-- 296 (475)
Q Consensus 245 ~l~~vIiDE~H~~~~~~~~~~~~~il~~~~-----~~~~~l~~SAT~~~---------------------~~~~~~~~-- 296 (475)
++.++|+||+|||.+.|+...+..++..++ ...|.+++|||++- .+..+...
T Consensus 340 ~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig 419 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG 419 (731)
T ss_pred hceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC
Confidence 899999999999999999999999988775 45799999999741 11222221
Q ss_pred hcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecC
Q 011908 297 YLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHG 375 (475)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~ 375 (475)
+...|.++.+... ......+....+.+...+|.-.+..++.++ .+++|||||+++.+.+++-+|+. ++....+|+
T Consensus 420 ~~~kpkiiD~t~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 420 FRGKPKIIDLTPQ--SATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred ccCCCeeEecCcc--hhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 3345555554322 222222333345566667776666666664 67999999999999999999965 688899999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhc
Q 011908 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQ 453 (475)
Q Consensus 376 ~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~ 453 (475)
.|.+.+|.+.+++|++....|||||+++++|+|||+|.|||||..|+...-|+ .||..|++..|..++++.|.+...+
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999 8999999999999999999998765
Q ss_pred CCCchhhhhh
Q 011908 454 GSPLKEVETC 463 (475)
Q Consensus 454 ~~~~~~~~~~ 463 (475)
...-+.+++.
T Consensus 576 ~KL~ktL~k~ 585 (731)
T KOG0347|consen 576 KKLCKTLKKK 585 (731)
T ss_pred HHHHHHHhhc
Confidence 5544444433
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.9e-48 Score=402.60 Aligned_cols=327 Identities=21% Similarity=0.313 Sum_probs=258.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH
Q 011908 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 105 ~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
.+++.+.+.|.+.|+.+||++|.++++.+++|+|+++++|||||||++|++|+++.+.+ ..+.++||++||++
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChHH
Confidence 37899999999999999999999999999999999999999999999999999999865 33678999999999
Q ss_pred hHHHHHHHHHHhCC-CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC----CCCCCCccEEEEeccccccc
Q 011908 185 LAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 185 La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~----~~~~~~l~~vIiDE~H~~~~ 259 (475)
||.|+++.++++.. ++++..+.|+.+ ..+...+..+++|+|+||+++...+... ...+++++++|+||+|++.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 99999999998853 566666666666 4444556667899999999987543221 12378999999999999876
Q ss_pred cCcHHHHHHHHHhC-------CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEecc------
Q 011908 260 VGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS------ 326 (475)
Q Consensus 260 ~~~~~~~~~il~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 326 (475)
. |+..+..+++.+ +.++|++++|||+++... ....++..+..+ +..+. ..............
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~--~~~~~~~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG--SPRGARTVALWEPPLTELTG 246 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC--CCcCceEEEEecCCcccccc
Confidence 4 777766655543 567899999999987654 566666666433 22211 11111111111111
Q ss_pred ----------CcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc---------cCCeeeecCCCCHHHHHHHHH
Q 011908 327 ----------MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---------SYNCEPLHGDISQSQRERTLS 387 (475)
Q Consensus 327 ----------~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~---------~~~~~~lh~~~~~~~r~~~~~ 387 (475)
..++...+..+++ .+.++||||+|++.++.++..+.+ +.++..+||++++++|.++++
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred ccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 0123334444443 467999999999999999998754 356889999999999999999
Q ss_pred HHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeCh
Q 011908 388 AFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDA 447 (475)
Q Consensus 388 ~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~ 447 (475)
+|++|++++||||+++++|||+|++++||+++.|.+..+|+ +||+||.|+.|.+++++..
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred HHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 99999999999999999999999999999999999999999 8899999999999999863
No 33
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=6.1e-48 Score=407.19 Aligned_cols=355 Identities=16% Similarity=0.231 Sum_probs=271.5
Q ss_pred cCCCCCCcchhhhhhhhccccc---------cccCCCCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC
Q 011908 66 SRPLDFKSSIAWQHAQSAVDDY---------VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG 136 (475)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~ 136 (475)
..+++--....|+.......+. ..+.......+. .++.+..+.+.+.+...++||++|.++|+.+.++
T Consensus 390 ~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~---~~~~~~~~~~~~~~~~~f~~T~~Q~~aI~~I~~d 466 (926)
T TIGR00580 390 NPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGH---AFPPDLEWQQEFEDSFPFEETPDQLKAIEEIKAD 466 (926)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 4556667778898753222111 112233333343 2345677788887765558999999999999986
Q ss_pred ------CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCC--CceEEEEcC
Q 011908 137 ------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGG 208 (475)
Q Consensus 137 ------~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~--~~~~~~~g~ 208 (475)
+|++++||||||||.+|+.+++..+.+ +.+++|++||++||.|+++.|++++.+ +++..++|+
T Consensus 467 ~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~ 537 (926)
T TIGR00580 467 MESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRF 537 (926)
T ss_pred hcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEecc
Confidence 789999999999999999999988844 789999999999999999999998764 456667777
Q ss_pred CChhHHHH---HhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEee
Q 011908 209 TPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 209 ~~~~~~~~---~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SA 284 (475)
....++.. .+.. .++|+||||..+ ...+.+++++++||||+|+ |+...+..+..++.++|+++|||
T Consensus 538 ~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahr-----fgv~~~~~L~~~~~~~~vL~~SA 607 (926)
T TIGR00580 538 RSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQR-----FGVKQKEKLKELRTSVDVLTLSA 607 (926)
T ss_pred ccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccc-----cchhHHHHHHhcCCCCCEEEEec
Confidence 66544332 3333 489999998432 3456789999999999999 67777888888888999999999
Q ss_pred ecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHH
Q 011908 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364 (475)
Q Consensus 285 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l 364 (475)
||+|.+..+......++..+....... ..+..+.... ....+...+.++...+++++||||++++++.+++.|
T Consensus 608 Tpiprtl~~~l~g~~d~s~I~~~p~~R----~~V~t~v~~~---~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 608 TPIPRTLHMSMSGIRDLSIIATPPEDR----LPVRTFVMEY---DPELVREAIRRELLRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred CCCHHHHHHHHhcCCCcEEEecCCCCc----cceEEEEEec---CHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHH
Confidence 999987766665666666554322111 1122222211 222234445556667899999999999999999999
Q ss_pred Hc---cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH---hhccCCCCCC
Q 011908 365 AK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL---STQISRPGKS 438 (475)
Q Consensus 365 ~~---~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~---~gR~gR~g~~ 438 (475)
.+ ++++..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||++++++++..++ +||+||.|+.
T Consensus 681 ~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~ 760 (926)
T TIGR00580 681 RELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK 760 (926)
T ss_pred HHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC
Confidence 76 57899999999999999999999999999999999999999999999999999998877555 7777777788
Q ss_pred CcEEEeeChhh
Q 011908 439 RVLSEMLDADL 449 (475)
Q Consensus 439 ~~~~~~~~~~~ 449 (475)
|.|++++.+++
T Consensus 761 g~aill~~~~~ 771 (926)
T TIGR00580 761 AYAYLLYPHQK 771 (926)
T ss_pred eEEEEEECCcc
Confidence 99999987653
No 34
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-48 Score=354.19 Aligned_cols=358 Identities=31% Similarity=0.518 Sum_probs=319.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
-+|++++|+++|++.+...||.+|+.+|++||..+.+|.|+.+++++|+|||.++.+++++.+-- .....++++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~ke~qali 99 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVKETQALI 99 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc------chHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999988722 123567999
Q ss_pred EeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 179 LAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 179 l~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
++||++||.|.......++. +..+..+.||.+...+...+.. .++|++|||+++.+.+....+....++++|+||++
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 99999999999988888876 4455667788887756555544 58999999999999999888888889999999999
Q ss_pred cccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHH
Q 011908 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (475)
.++..+|.+++..+++.+|++.|++++|||.|+++......+..+|..+....+. .....+.++++.....+|...+.
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~--ltl~gikq~~i~v~k~~k~~~l~ 257 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE--LTLEGIKQFYINVEKEEKLDTLC 257 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh--hhhhheeeeeeeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999774443 33556677777777777999999
Q ss_pred HHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 011908 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 336 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~ 414 (475)
.+.+ .-.+.+||||+++.+..+...|. .++.+..+||.|.+.+|..++..|+.|..+|||+|+.+++|+|+-++..
T Consensus 258 dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~sl 334 (397)
T KOG0327|consen 258 DLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSL 334 (397)
T ss_pred HHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcce
Confidence 9887 45689999999999999999994 4689999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhhhhhhhccC
Q 011908 415 VELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETCTMTWVAGL 471 (475)
Q Consensus 415 vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (475)
||+|+.|.....|+ +||+||.|++|.++.++...+.. .++++|+++.+.+..+
T Consensus 335 vinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~----~lk~ie~~y~~~i~e~ 389 (397)
T KOG0327|consen 335 VVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVR----DLKDIEKFYNTPIEEL 389 (397)
T ss_pred eeeeccccchhhhhhhcccccccCCCceeeeeehHhhHH----HHHhHHHhcCCcceec
Confidence 99999999999999 99999999999999999998887 5777888887766554
No 35
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-47 Score=388.64 Aligned_cols=365 Identities=34% Similarity=0.570 Sum_probs=322.5
Q ss_pred CCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCC
Q 011908 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~ 172 (475)
..+.+..+|...+++..++.-+++.++.++|++|.+|||+|+.|+++|.+|.||||||++|++|++.++..++.... +.
T Consensus 359 ~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~-gd 437 (997)
T KOG0334|consen 359 ECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEE-GD 437 (997)
T ss_pred CCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhh-CC
Confidence 45567778999999999999999999999999999999999999999999999999999999999977765544333 45
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC---CCCCCcc
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LNLSEVQ 247 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~---~~~~~l~ 247 (475)
||.++||+||++|+.|+++++..+.. ++.+++++||.....+...+..++.|+||||+++.+.+-.+. .++.+..
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 99999999999999999999888765 788999999999999999999999999999999998775433 3455666
Q ss_pred EEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEecc-
Q 011908 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS- 326 (475)
Q Consensus 248 ~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 326 (475)
++|+||+|+|++.+|..+...|+..+++.+|.+++|||.|..+..++...+..|..+.+. ....+...+......+.
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~~ 595 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCAI 595 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999988886553 33344555565555555
Q ss_pred CcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 011908 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (475)
Q Consensus 327 ~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~ 405 (475)
..+|..-|..++.+....++++|||...+.|..+...|. .++.|..+||+-++.+|..++++|++|.+++||+|+++++
T Consensus 596 e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvar 675 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVAR 675 (997)
T ss_pred chHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhc
Confidence 788999999999888889999999999999999999884 5789999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhh
Q 011908 406 GLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEV 460 (475)
Q Consensus 406 GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~ 460 (475)
|+|++++..||+|++|.-...|+ .||+||+||.|.|++|+++++...+....+-+
T Consensus 676 GLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 676 GLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred ccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 99999999999999999999998 99999999999999999997776555444433
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.4e-46 Score=387.34 Aligned_cols=334 Identities=18% Similarity=0.226 Sum_probs=257.7
Q ss_pred CCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeC
Q 011908 103 KLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 103 ~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~P 181 (475)
.++....+...++. .|+..+++.|.++|+.++.|+|+++.+|||+|||+||++|++.. +..+|||+|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiTLVISP 508 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISP 508 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcEEEEeC
Confidence 45666777777765 58899999999999999999999999999999999999999853 456999999
Q ss_pred CHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhh------CCCCEEEEccHHHHH--HHHhC---CCCCCCccEEE
Q 011908 182 TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD------YGVDAVVGTPGRVID--LIKRN---ALNLSEVQFVV 250 (475)
Q Consensus 182 t~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Ilv~T~~~l~~--~l~~~---~~~~~~l~~vI 250 (475)
+++|+.++...+... ++....+.++....++...+. ..++|+|+||+++.. .+.+. ......+.+||
T Consensus 509 LiSLmqDQV~~L~~~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 999999777777664 678888888888666654433 348999999999852 12211 11234588999
Q ss_pred EeccccccccC--cHHHHHHH--HHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEecc
Q 011908 251 LDEADQMLSVG--FAEDVEVI--LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (475)
Q Consensus 251 iDE~H~~~~~~--~~~~~~~i--l~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (475)
|||||++++|+ |...+..+ +....++.+++++|||+++.+.......+.......+....... .+ .+.+...
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp---NL-~y~Vv~k 662 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP---NL-WYSVVPK 662 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc---ce-EEEEecc
Confidence 99999999987 66666543 44444678899999999998877665554433222222211111 11 1222222
Q ss_pred CcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 011908 327 MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAAR 405 (475)
Q Consensus 327 ~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~ 405 (475)
.......+..++.....+...||||+++.+++.++..|. .++.+..+||+|++++|..+++.|.+|+++|||||+++++
T Consensus 663 ~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 663 TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 222233455555544345689999999999999999995 4799999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcC
Q 011908 406 GLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQG 454 (475)
Q Consensus 406 GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~ 454 (475)
|||+|++++||+|++|.+...|+ +||+||.|+.|.|++++++.|.....
T Consensus 743 GIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~ 793 (1195)
T PLN03137 743 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVK 793 (1195)
T ss_pred CCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHH
Confidence 99999999999999999999999 89999999999999999988875443
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-45 Score=371.32 Aligned_cols=318 Identities=20% Similarity=0.304 Sum_probs=243.1
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.|+..|+++|.++++.+++++++++++|||||||++|++|++.. +..++|++|+++|+.|+.+.+...
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 58899999999999999999999999999999999999998742 456999999999999999999876
Q ss_pred CCCCceEEEEcCCChhHHHH---Hh-hCCCCEEEEccHHHHHHH-HhCCC-CCCCccEEEEeccccccccC--cHHHHHH
Q 011908 197 APSLDTICVYGGTPISHQMR---AL-DYGVDAVVGTPGRVIDLI-KRNAL-NLSEVQFVVLDEADQMLSVG--FAEDVEV 268 (475)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Ilv~T~~~l~~~l-~~~~~-~~~~l~~vIiDE~H~~~~~~--~~~~~~~ 268 (475)
++....+.++....+... .+ ...++|+++||+++.... ....+ ...+++++||||+|++.+|+ |...+..
T Consensus 75 --gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 75 --GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 566666666665443322 22 234899999999975322 11111 46789999999999999886 5555443
Q ss_pred H--HHhCCCCCcEEEEeeecChhHHHHHHHhc--CCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCC
Q 011908 269 I--LERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKG 344 (475)
Q Consensus 269 i--l~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~ 344 (475)
+ +....++.+++++|||+++.+.......+ ..+..... ..... .+ .+.+..........+..++.....+
T Consensus 153 l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~--s~~r~---nl-~~~v~~~~~~~~~~l~~~l~~~~~~ 226 (470)
T TIGR00614 153 LGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT--SFDRP---NL-YYEVRRKTPKILEDLLRFIRKEFKG 226 (470)
T ss_pred HHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC--CCCCC---Cc-EEEEEeCCccHHHHHHHHHHHhcCC
Confidence 3 23333678899999999988766554443 23433321 11111 11 1222222223333444444433456
Q ss_pred CcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCC
Q 011908 345 GKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERK 423 (475)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~ 423 (475)
..+||||+++++++.++..|.. ++.+..+||+|++++|.++++.|++|+++|||||+++++|+|+|++++||++++|.+
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s 306 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKS 306 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCC
Confidence 6779999999999999999954 689999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHH--hhccCCCCCCCcEEEeeChhhhhhcC
Q 011908 424 EVQFL--STQISRPGKSRVLSEMLDADLLSSQG 454 (475)
Q Consensus 424 ~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~ 454 (475)
...|+ +||+||.|..|.|++++++.|.....
T Consensus 307 ~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~ 339 (470)
T TIGR00614 307 MESYYQESGRAGRDGLPSECHLFYAPADINRLR 339 (470)
T ss_pred HHHHHhhhcCcCCCCCCceEEEEechhHHHHHH
Confidence 99999 89999999999999999998875433
No 38
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=6.2e-47 Score=362.91 Aligned_cols=346 Identities=28% Similarity=0.445 Sum_probs=302.1
Q ss_pred CCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCC
Q 011908 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~ 172 (475)
...+...+|+.+.+...++..|+..+|..||++|..|||.++.++|+|+|+..|+|||++|.+.+++.+.. ...
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~ 92 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSS 92 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccC
Confidence 34456667889999999999999999999999999999999999999999999999999999888887733 345
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCC---CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~v 249 (475)
.++.+|++|||++|.|+.+.+...++ ++++.++.||...+.....+.. ++|+||||+++.+++....++.+.++++
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEE
Confidence 78899999999999999999998876 7788889999987766555544 7899999999999999999999999999
Q ss_pred EEeccccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEe-ccC
Q 011908 250 VLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSM 327 (475)
Q Consensus 250 IiDE~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 327 (475)
|+||||.+.+ ..|...+..|+..+|..+|++++|||.|..+.+.+..++.+|..+....+... + -.+.+++.. +..
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~-L-~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQ-L-FGIKQYVVAKCSP 249 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCce-e-echhheeeeccCC
Confidence 9999999998 56999999999999999999999999999999999999999999986443322 2 223333332 222
Q ss_pred -------cchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011908 328 -------YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (475)
Q Consensus 328 -------~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 399 (475)
..|...|-++.+++ +-.++||||+.+..|+-++..|. .++.|.++.|.|++.+|..+++.+++-.++|||+
T Consensus 250 nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 12566777777776 56799999999999999999995 5899999999999999999999999999999999
Q ss_pred ecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChh
Q 011908 400 TDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDAD 448 (475)
Q Consensus 400 T~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~ 448 (475)
|+..++|||-|+++.||+.|+|-+...|+ +||+||.|-.|.+++++...
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccc
Confidence 99999999999999999999999999999 99999999999998887754
No 39
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.8e-46 Score=387.74 Aligned_cols=355 Identities=17% Similarity=0.263 Sum_probs=291.5
Q ss_pred CCCCCCcchhhhhhhhccccc---------cccCCCCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC-
Q 011908 67 RPLDFKSSIAWQHAQSAVDDY---------VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG- 136 (475)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~- 136 (475)
-.+.--....|+..+....+. .-+.++...++. .++.+...++.|.+.-+++-|+.|..||+++.++
T Consensus 534 p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~---af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM 610 (1139)
T COG1197 534 PKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGF---AFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDM 610 (1139)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHh
Confidence 456666778898764222111 114445555555 5567889999999988889999999999999876
Q ss_pred -----CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCce--EEEEcCC
Q 011908 137 -----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGT 209 (475)
Q Consensus 137 -----~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~--~~~~g~~ 209 (475)
||.|+||++|-|||-+|+-+++.++ .+|+||+++|||..||+||++.|++.|.++.+ ..+.-=.
T Consensus 611 ~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~ 681 (1139)
T COG1197 611 ESGKPMDRLICGDVGFGKTEVAMRAAFKAV---------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFR 681 (1139)
T ss_pred ccCCcchheeecCcCCcHHHHHHHHHHHHh---------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccC
Confidence 6899999999999999999999998 44899999999999999999999999986654 4444333
Q ss_pred ChhHH---HHHhhCC-CCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 210 PISHQ---MRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 210 ~~~~~---~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
+.+++ .+.+..| .||+||| |.+.++.+.|++++++||||-|+ ||+..++-++.+..+.+++-||||
T Consensus 682 s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSAT 751 (1139)
T COG1197 682 SAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSAT 751 (1139)
T ss_pred CHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCC
Confidence 33333 3334444 9999999 88888899999999999999999 999999999999999999999999
Q ss_pred cChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH
Q 011908 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA 365 (475)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~ 365 (475)
|+|++..+....+.+...+...+. ++.+..+...+ .+..-+-..+++++.+|||++..+|.++..+.+++.|.
T Consensus 752 PIPRTL~Msm~GiRdlSvI~TPP~------~R~pV~T~V~~-~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~ 824 (1139)
T COG1197 752 PIPRTLNMSLSGIRDLSVIATPPE------DRLPVKTFVSE-YDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLR 824 (1139)
T ss_pred CCcchHHHHHhcchhhhhccCCCC------CCcceEEEEec-CChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHH
Confidence 999999999999988888865332 33333333333 23344555667788899999999999999999999997
Q ss_pred c---cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH---hhccCCCCCCC
Q 011908 366 K---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL---STQISRPGKSR 439 (475)
Q Consensus 366 ~---~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~---~gR~gR~g~~~ 439 (475)
+ +.++++.||.|+..+-+++|..|.+|+++|||||+++|.||||||++.+|+.++++++.+|+ .||+||..+.+
T Consensus 825 ~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~A 904 (1139)
T COG1197 825 ELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQA 904 (1139)
T ss_pred HhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceE
Confidence 6 46799999999999999999999999999999999999999999999999999999999999 56666666678
Q ss_pred cEEEeeChhhh
Q 011908 440 VLSEMLDADLL 450 (475)
Q Consensus 440 ~~~~~~~~~~~ 450 (475)
+|++++.++..
T Consensus 905 YAYfl~p~~k~ 915 (1139)
T COG1197 905 YAYFLYPPQKA 915 (1139)
T ss_pred EEEEeecCccc
Confidence 99999987554
No 40
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.5e-45 Score=393.41 Aligned_cols=369 Identities=15% Similarity=0.225 Sum_probs=274.9
Q ss_pred cCCCCCCcchhhhhhhhccccc---------cccCCCCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC
Q 011908 66 SRPLDFKSSIAWQHAQSAVDDY---------VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG 136 (475)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~ 136 (475)
..+++--....|+..+....+. ..+..+...++.. +..+....+.+.+...++||+.|.++|+.+.++
T Consensus 539 ~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~---~~~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d 615 (1147)
T PRK10689 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA---FKHDREQYQLFCDSFPFETTPDQAQAINAVLSD 615 (1147)
T ss_pred CCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 3456667778898753221111 1122333334442 344566777777666669999999999999987
Q ss_pred ------CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcC
Q 011908 137 ------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGG 208 (475)
Q Consensus 137 ------~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~ 208 (475)
+|++++|+||+|||.+|+.+++..+. .+.+++|++||++||.|+++.|++.+. ++++.+++++
T Consensus 616 ~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~ 686 (1147)
T PRK10689 616 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRF 686 (1147)
T ss_pred hhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence 78999999999999999988887763 378999999999999999999998775 3566677887
Q ss_pred CChhHHHHHhh----CCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEee
Q 011908 209 TPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 209 ~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SA 284 (475)
.+..++...+. ..++|+||||+.+ +..+.+++++++||||+|++ +......+..++.++|+++|||
T Consensus 687 ~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf-----G~~~~e~lk~l~~~~qvLl~SA 756 (1147)
T PRK10689 687 RSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF-----GVRHKERIKAMRADVDILTLTA 756 (1147)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc-----chhHHHHHHhcCCCCcEEEEcC
Confidence 77666554332 3589999998643 24456789999999999994 4555677788888999999999
Q ss_pred ecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHH
Q 011908 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364 (475)
Q Consensus 285 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l 364 (475)
||+|.+..+....+.++..+....... ..+..+... .........++.+...+++++||||+++.++.+++.|
T Consensus 757 Tpiprtl~l~~~gl~d~~~I~~~p~~r----~~v~~~~~~---~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L 829 (1147)
T PRK10689 757 TPIPRTLNMAMSGMRDLSIIATPPARR----LAVKTFVRE---YDSLVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 (1147)
T ss_pred CCCHHHHHHHHhhCCCcEEEecCCCCC----CCceEEEEe---cCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 999988888877787887775422211 112222211 1222234455666667889999999999999999999
Q ss_pred Hc---cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH---hhccCCCCCC
Q 011908 365 AK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL---STQISRPGKS 438 (475)
Q Consensus 365 ~~---~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~---~gR~gR~g~~ 438 (475)
.+ +.++..+||+|++++|.+++.+|++|+.+|||||+++++|+|+|++++||+.++++.+..++ +||+||.|+.
T Consensus 830 ~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~ 909 (1147)
T PRK10689 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 (1147)
T ss_pred HHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCc
Confidence 65 46899999999999999999999999999999999999999999999999888877655544 7778888888
Q ss_pred CcEEEeeChhh--hhhcCCCchhhhhh
Q 011908 439 RVLSEMLDADL--LSSQGSPLKEVETC 463 (475)
Q Consensus 439 ~~~~~~~~~~~--~~~~~~~~~~~~~~ 463 (475)
|.|++++..+. ...+...+.-++.+
T Consensus 910 g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 910 AYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred eEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 99998886542 22333344444443
No 41
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-46 Score=335.46 Aligned_cols=360 Identities=28% Similarity=0.387 Sum_probs=296.3
Q ss_pred CCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCC
Q 011908 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~ 170 (475)
+.--...+|++++|.|++++.+..++|..|+.+|..++|.++.. +|.+.|+..|+|||.+|.+.++..+.. .
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------~ 157 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------D 157 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------c
Confidence 33344567999999999999999999999999999999999976 689999999999999999999988732 2
Q ss_pred CCCceEEEEeCCHHhHHHHHHHHHHhCCCC--ceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh-CCCCCCCcc
Q 011908 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQ 247 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~l~ 247 (475)
..-||+++++||++||.|..+-+.+.+.-. ......-+.... +-..+ ..+|+||||+.+.+++.. ..+.+..++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~~i--~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGNKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCCcc--hhheeeCCCccHHHHHHHHHhhChhhce
Confidence 346889999999999999999999987643 333333332110 00111 158999999999999887 777889999
Q ss_pred EEEEecccccccc-CcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEec-
Q 011908 248 FVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT- 325 (475)
Q Consensus 248 ~vIiDE~H~~~~~-~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (475)
++|+|||+.+.+. ||+++-..+...+|++.|++.+|||....+..++.....++..+.+..+.. ....+.++++.+
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel--~L~~IkQlyv~C~ 312 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREEL--ALDNIKQLYVLCA 312 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhc--cccchhhheeecc
Confidence 9999999988865 588988999999999999999999999999999999999998887644322 233455555544
Q ss_pred cCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 011908 326 SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (475)
Q Consensus 326 ~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~ 404 (475)
...+|..++..+.... .-++.+|||.++..+..++..+. ++..+..+||+|.-++|..++..|+.|..+|||+|+++.
T Consensus 313 ~~~~K~~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A 391 (477)
T KOG0332|consen 313 CRDDKYQALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA 391 (477)
T ss_pred chhhHHHHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh
Confidence 4567888888855443 56799999999999999999995 579999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEecCCCCC------hhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhhhhhh
Q 011908 405 RGLDVPNVDLVELVVLERK------EVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETCTMTW 467 (475)
Q Consensus 405 ~GiDip~~~~vI~~~~~~~------~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
+|||++.++.||+||.|-. ...|+ +||+||.|+.|.++.+++.++... .++.|++++...
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~---~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMN---IMNKIQKHFNMK 459 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHH---HHHHHHHHHhhc
Confidence 9999999999999999853 56777 999999999999999998765432 466677776433
No 42
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-46 Score=340.58 Aligned_cols=347 Identities=30% Similarity=0.472 Sum_probs=318.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEE
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~l 177 (475)
...|..++|+..+.+++.+.||..|||+|++.+|.++.+++++-.+-||||||.++++|+++.+..+. ..|.+++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Ral 94 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRAL 94 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----cccccee
Confidence 45789999999999999999999999999999999999999999999999999999999999986643 3477899
Q ss_pred EEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
++.||++||.|..+.++++.. ++...+++||....++...+..++||+++||+++.+..-.-.+.++.+.|||+||++
T Consensus 95 ilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 95 ILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred eccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 999999999999999999876 566788899999999999999899999999999998776666789999999999999
Q ss_pred cccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHH
Q 011908 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (475)
++.+++|..++..++..++.+.|.++||||+|..+..+....+.+|..+.+ +-+..+.+............+|...|.
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRl--dvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRL--DVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEe--ehhhhcchhhhhheeeeccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999886 334556666677777888888999999
Q ss_pred HHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 011908 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 336 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~ 414 (475)
.++.......+++|||++..++|.+...+.. ++.+..+.|.|++.-|.....+|..++..+||.|+++.+|+|+|-.+.
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 9998876777999999999999999999964 688999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 415 VELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 415 vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
||+||.|-...-|+ .||+.|+|+.|.++.++.+++..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDP 371 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccch
Confidence 99999999988888 89999999999999999998774
No 43
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.5e-44 Score=369.69 Aligned_cols=325 Identities=19% Similarity=0.273 Sum_probs=247.4
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH
Q 011908 106 ISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 106 l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
.++...+.|++ .|+.+++++|.++++.+++++++++.+|||+|||++|++|++.. +..++|++|+++
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~s 76 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLIS 76 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHHH
Confidence 34444455555 58999999999999999999999999999999999999998743 346899999999
Q ss_pred hHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH---hh-CCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccc
Q 011908 185 LAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---LD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (475)
Q Consensus 185 La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~ 260 (475)
|+.|+.+.+... ++....+.++......... .. ...+++++||+++........+...+++++||||+|++.+|
T Consensus 77 L~~dqv~~l~~~--gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 77 LMKDQVDQLLAN--GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 999999999876 5666666666654443222 22 34799999999987432222334567899999999999987
Q ss_pred C--cHHHHH---HHHHhCCCCCcEEEEeeecChhHHHHHHHhc--CCCcEEEeecCCcccccCCeEEEEEeccCcchhhH
Q 011908 261 G--FAEDVE---VILERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (475)
Q Consensus 261 ~--~~~~~~---~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (475)
+ |...+. .+...+ ++.+++++|||+++.........+ .++.... ...... .+ .+.......+...
T Consensus 155 G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~--~~~~r~---nl--~~~v~~~~~~~~~ 226 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI--SSFDRP---NI--RYTLVEKFKPLDQ 226 (607)
T ss_pred cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE--CCCCCC---cc--eeeeeeccchHHH
Confidence 6 444443 333343 578899999999987765443333 3333221 111111 11 1112222233344
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~ 412 (475)
+..++... .+.++||||+++++++.++..|.. ++.+..+||+|++++|.++++.|.+|+.+|||||+++++|||+|++
T Consensus 227 l~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V 305 (607)
T PRK11057 227 LMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNV 305 (607)
T ss_pred HHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCc
Confidence 44444433 567999999999999999999954 6899999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhc
Q 011908 413 DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQ 453 (475)
Q Consensus 413 ~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~ 453 (475)
++||+|+.|.+...|+ +||+||.|.+|.|++++++.|....
T Consensus 306 ~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~ 348 (607)
T PRK11057 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWL 348 (607)
T ss_pred CEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHH
Confidence 9999999999999999 8999999999999999999887543
No 44
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-45 Score=342.98 Aligned_cols=354 Identities=29% Similarity=0.409 Sum_probs=284.5
Q ss_pred CCccCCCCCHHHHHH----------HHHCCCCCCcHHHHHHhhhhhc---------CCcEEEEccCCCChhHHhHHHHHH
Q 011908 99 LDISKLDISQDIVAA----------LARRGISKLFPIQKAVLEPAMQ---------GRDMIGRARTGTGKTLAFGIPILD 159 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~----------l~~~~~~~l~~~Q~~~i~~i~~---------~~~~li~~~tGsGKT~~~~~~~l~ 159 (475)
..|+.++.++.+... +.++++..++|.|..+++.++. .+|+.+.+|||||||++|.+|+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 345666666655444 7888999999999999998853 368999999999999999999999
Q ss_pred HHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCC--CceEEEEcCCChhHHHHHhhCC-----CCEEEEccHHH
Q 011908 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYG-----VDAVVGTPGRV 232 (475)
Q Consensus 160 ~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~--~~~~~~~g~~~~~~~~~~~~~~-----~~Ilv~T~~~l 232 (475)
.+.... -+..+++|++||++|+.|+++.|.++..+ +.+..+.|-.....+...+.+. .+|+|+||++|
T Consensus 207 ~L~~R~-----v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL 281 (620)
T KOG0350|consen 207 LLSSRP-----VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL 281 (620)
T ss_pred HHccCC-----ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH
Confidence 986532 22468999999999999999999999874 4455566666666666666543 49999999999
Q ss_pred HHHHH-hCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC----------------------------------CCCC
Q 011908 233 IDLIK-RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----------------------------------PQNR 277 (475)
Q Consensus 233 ~~~l~-~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~----------------------------------~~~~ 277 (475)
.+.+. ...+.+++++++||||+||+++..|...+..++..+ .+..
T Consensus 282 VDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l 361 (620)
T KOG0350|consen 282 VDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPL 361 (620)
T ss_pred HHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchh
Confidence 99988 477889999999999999998876655444444333 1223
Q ss_pred cEEEEeeecChhHHHHHHHhcCCCcEEEeec--CCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChH
Q 011908 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG--DSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355 (475)
Q Consensus 278 ~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~ 355 (475)
+.+++|||+...-..+...-+..|....+.+ .....++..+.+..+..+...+.-.+..+++.. +..++|+|+++.+
T Consensus 362 ~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 362 WKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVS 440 (620)
T ss_pred HhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchH
Confidence 4788888887766666666677775554433 123344555667777777778888888888776 6789999999999
Q ss_pred HHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--
Q 011908 356 DADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL-- 428 (475)
Q Consensus 356 ~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~-- 428 (475)
.+.+++..|+- .+++..+.|.++...|...++.|..|+++||||++++.+|+|+.+++.||+||+|.+...|+
T Consensus 441 sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR 520 (620)
T KOG0350|consen 441 SANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHR 520 (620)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHh
Confidence 99999998862 35677799999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCcEEEeeChhhhhhcCCCch
Q 011908 429 STQISRPGKSRVLSEMLDADLLSSQGSPLK 458 (475)
Q Consensus 429 ~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~ 458 (475)
+||.+|+|+.|.|+++++..+...+.+.++
T Consensus 521 ~GRTARAgq~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 521 AGRTARAGQDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred hcccccccCCceEEEeeccccchHHHHHHH
Confidence 999999999999999999888765444333
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.8e-44 Score=378.02 Aligned_cols=331 Identities=22% Similarity=0.343 Sum_probs=252.1
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
.|+++++++.+.+.+.+.|+.+|+++|.++++. +..++|+++++|||||||++|.++++..+.. +.+++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~kal~ 72 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKALY 72 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcEEE
Confidence 467889999999999999999999999999998 7789999999999999999999999998843 678999
Q ss_pred EeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011908 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 179 l~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~ 257 (475)
++|+++||.|.++.++++.+ ++++..++|+...... ....++|+|+||+++..++.+....+.+++++|+||+|.+
T Consensus 73 i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred EeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 99999999999999997643 6778888887654332 1234799999999999888766556789999999999999
Q ss_pred cccCcHHHHHHHHHhC---CCCCcEEEEeeecChhHHHHHHHhcCCC--------cE--EEeecCCcccccCCeEEEEEe
Q 011908 258 LSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNP--------LT--VDLVGDSDQKLADGISLYSIA 324 (475)
Q Consensus 258 ~~~~~~~~~~~il~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~ 324 (475)
.+.+++..++.++.++ .++.|++++|||+++ ...+.. |+... .. ..+.......... ... .
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~--~ 223 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQR--E 223 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHH-HhCCCcccCCCCCCCCeeeEecCCeecccc--ccc--c
Confidence 9888898888776554 577899999999875 233332 22211 11 1000000000000 000 0
Q ss_pred ccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHcc-------------------------------------
Q 011908 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS------------------------------------- 367 (475)
Q Consensus 325 ~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~------------------------------------- 367 (475)
.....+...+..+.+....++++||||+++.+++.++..|...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 0111122334444444556789999999999999888877431
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe----cC-----CCCChhHHH--hhccCCCC
Q 011908 368 YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL----VV-----LERKEVQFL--STQISRPG 436 (475)
Q Consensus 368 ~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~----~~-----~~~~~~~~~--~gR~gR~g 436 (475)
..++.+||+|++++|..+++.|++|.++|||||+++++|+|+|+.++||. || .|.+..+|+ +||+||.|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 25788999999999999999999999999999999999999999998886 55 456666776 77777777
Q ss_pred CC--CcEEEeeChh
Q 011908 437 KS--RVLSEMLDAD 448 (475)
Q Consensus 437 ~~--~~~~~~~~~~ 448 (475)
.. |.+++++...
T Consensus 384 ~d~~G~~ii~~~~~ 397 (737)
T PRK02362 384 LDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCceEEEEecCc
Confidence 54 7888888764
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1e-43 Score=379.37 Aligned_cols=326 Identities=20% Similarity=0.324 Sum_probs=242.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
+++.+.+.+.+ ++..||++|.++++.+.+++|+++++|||||||++|++|+++.+...........+.+++|++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67888888776 67789999999999999999999999999999999999999988754322222347789999999999
Q ss_pred HHHHHHHHHH-------hC-------CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCC--CCCCccEE
Q 011908 186 AKQVEKEFHE-------SA-------PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFV 249 (475)
Q Consensus 186 a~Q~~~~l~~-------~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~--~~~~l~~v 249 (475)
+.|+++.+.. +. +++.+.+.+|+.....+...+.+.++|+|+||+++..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886552 21 25677888899887777777777899999999999877754432 47889999
Q ss_pred EEeccccccccCcHHHHHHHHHhC----CCCCcEEEEeeecChhHHHHHHHhcCC-----CcEEEeecCCcccccCCeEE
Q 011908 250 VLDEADQMLSVGFAEDVEVILERL----PQNRQSMMFSATMPPWIRSLTNKYLKN-----PLTVDLVGDSDQKLADGISL 320 (475)
Q Consensus 250 IiDE~H~~~~~~~~~~~~~il~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 320 (475)
|+||+|.+.+..++..+...+.++ +...|++++|||+++. .......... +....+...... .....
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~---k~~~i 252 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFV---KPFDI 252 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCC---ccceE
Confidence 999999999877777665554433 4678999999998762 2222222111 111111111000 00111
Q ss_pred EEE-------eccCcch-hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-------cCCeeeecCCCCHHHHHHH
Q 011908 321 YSI-------ATSMYEK-PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-------SYNCEPLHGDISQSQRERT 385 (475)
Q Consensus 321 ~~~-------~~~~~~k-~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-------~~~~~~lh~~~~~~~r~~~ 385 (475)
... ....... ...+..+.+....++++|||||++..++.++..|.+ ...+..+||+|++++|..+
T Consensus 253 ~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 253 KVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred EEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 000 0011111 122233333344578999999999999999999865 2579999999999999999
Q ss_pred HHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccCCCCC
Q 011908 386 LSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGK 437 (475)
Q Consensus 386 ~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g~ 437 (475)
++.|++|+++|||||+++++|||+|++++||+++.|.+...|+ ||+||+||
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~yl-QRiGRaGR 383 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLL-QRIGRAGH 383 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHH-HhcccCCC
Confidence 9999999999999999999999999999999999999999888 66666664
No 47
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.4e-43 Score=364.38 Aligned_cols=319 Identities=19% Similarity=0.290 Sum_probs=249.1
Q ss_pred HHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHH
Q 011908 113 ALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 113 ~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 191 (475)
.|++ +|+.+++++|.++++.+++|+|+++++|||+|||++|++|++.. +..++|++|+.+|+.|+.+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHHH
Confidence 3444 68999999999999999999999999999999999999998742 3458999999999999999
Q ss_pred HHHHhCCCCceEEEEcCCChhHHHHH----hhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccC--cHHH
Q 011908 192 EFHESAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAED 265 (475)
Q Consensus 192 ~l~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~--~~~~ 265 (475)
.++.. ++.+..+.++....+.... .....+|+++||+++........+...+++++||||+|++.+|+ |...
T Consensus 72 ~l~~~--gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~ 149 (591)
T TIGR01389 72 QLRAA--GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPE 149 (591)
T ss_pred HHHHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHH
Confidence 99986 5677777777765544332 22358999999999865443334456789999999999999876 5554
Q ss_pred HHHH---HHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhc
Q 011908 266 VEVI---LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342 (475)
Q Consensus 266 ~~~i---l~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~ 342 (475)
+..+ ...++ +.+++++|||+++.+.......+..+....+....... ...+.......+...+..++...
T Consensus 150 y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-----nl~~~v~~~~~~~~~l~~~l~~~- 222 (591)
T TIGR01389 150 YQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSFDRP-----NLRFSVVKKNNKQKFLLDYLKKH- 222 (591)
T ss_pred HHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCC-----CcEEEEEeCCCHHHHHHHHHHhc-
Confidence 4433 44454 44599999999998876666555422211111111111 11222223344555566666654
Q ss_pred CCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCC
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLE 421 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~ 421 (475)
.+.++||||++++.++.+++.|. .++.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||++++|
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 36789999999999999999995 46889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHH--hhccCCCCCCCcEEEeeChhhhhh
Q 011908 422 RKEVQFL--STQISRPGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 422 ~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~ 452 (475)
.+...|+ +||+||.|..+.|++++++.|...
T Consensus 303 ~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~ 335 (591)
T TIGR01389 303 GNLESYYQEAGRAGRDGLPAEAILLYSPADIAL 335 (591)
T ss_pred CCHHHHhhhhccccCCCCCceEEEecCHHHHHH
Confidence 9999998 888888888999999999988643
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=7.4e-43 Score=368.67 Aligned_cols=333 Identities=22% Similarity=0.322 Sum_probs=248.3
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
.|+++++++.+.+.+++.|+.+|+++|.++++. +..++|+++++|||||||++|.++++..+.. .+.++++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEE
Confidence 466788999999999999999999999999986 7889999999999999999999999988753 2568999
Q ss_pred EeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011908 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 179 l~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~ 257 (475)
++|+++|+.|+++.+.++.. ++++..++|+...... ....++|+|+||+++..++.+....+++++++|+||+|.+
T Consensus 74 l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred EeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 99999999999999987533 6777788887764332 2245799999999999888776666889999999999999
Q ss_pred cccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccC--CeE-EEEEeccCc--ch-h
Q 011908 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD--GIS-LYSIATSMY--EK-P 331 (475)
Q Consensus 258 ~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~--~k-~ 331 (475)
.+.+++..++.++..+....|++++|||+++ ...+.. |+....... . ...... .+. ......... .+ .
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~---~-~rpv~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVS---D-WRPVKLRKGVFYQGFLFWEDGKIERFP 224 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccC---C-CCCCcceeeEecCCeeeccCcchhcch
Confidence 9888999999999999889999999999975 344443 443322111 0 011110 000 000111110 11 1
Q ss_pred hHH-HHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc----------------------------------cCCeeeecCC
Q 011908 332 SII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK----------------------------------SYNCEPLHGD 376 (475)
Q Consensus 332 ~~l-~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~----------------------------------~~~~~~lh~~ 376 (475)
..+ ..+.+....++++||||+++..++.++..+.. ...++++||+
T Consensus 225 ~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 225 NSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 111 11222233578999999999999887765521 1248899999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe-------cCCCCChh-HHH--hhccCCCC--CCCcEEEe
Q 011908 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL-------VVLERKEV-QFL--STQISRPG--KSRVLSEM 444 (475)
Q Consensus 377 ~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~-------~~~~~~~~-~~~--~gR~gR~g--~~~~~~~~ 444 (475)
|++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.+..+. .|+ +||+||.| ..|.++++
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 99999999999999999999999999999999999999984 34444333 333 45555543 34888888
Q ss_pred eChhh
Q 011908 445 LDADL 449 (475)
Q Consensus 445 ~~~~~ 449 (475)
+..++
T Consensus 385 ~~~~~ 389 (720)
T PRK00254 385 ATTEE 389 (720)
T ss_pred ecCcc
Confidence 87644
No 49
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-43 Score=334.44 Aligned_cols=355 Identities=25% Similarity=0.368 Sum_probs=289.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
...++.+++.+...+|..|++.|.++++....+++++.|+|||||||++|.+|++..+....... ...|.+++|+.||+
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~-~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEK-HKVGLRALILSPTR 219 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhccc-CccceEEEEecchH
Confidence 45688899999999999999999999999999999999999999999999999999997755322 24588999999999
Q ss_pred HhHHHHHHHHHHhC--CCC--ceEEEEcCCChhHHHH-HhhCCCCEEEEccHHHHHHHHhCC--CCCCCccEEEEecccc
Q 011908 184 ELAKQVEKEFHESA--PSL--DTICVYGGTPISHQMR-ALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQ 256 (475)
Q Consensus 184 ~La~Q~~~~l~~~~--~~~--~~~~~~g~~~~~~~~~-~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~l~~vIiDE~H~ 256 (475)
+||.|++.++.++. ++. ....+........+.. .....++|+++||.++...+.... +.+..+.++|+||+++
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~ 299 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL 299 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh
Confidence 99999999999987 322 2222222211122111 112237999999999999888765 6788999999999999
Q ss_pred cccc-CcHHHHHHHHHhCC-CCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHH
Q 011908 257 MLSV-GFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334 (475)
Q Consensus 257 ~~~~-~~~~~~~~il~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (475)
+.+. .|..+...++..+. ++..+-++|||.+.++..++.....++..+.+ |..........+......+...|.-.+
T Consensus 300 lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~viv-g~~~sa~~~V~QelvF~gse~~K~lA~ 378 (593)
T KOG0344|consen 300 LFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIV-GLRNSANETVDQELVFCGSEKGKLLAL 378 (593)
T ss_pred hhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEE-ecchhHhhhhhhhheeeecchhHHHHH
Confidence 9988 78888888888774 45678889999999999999888877777654 332222222222344556667778888
Q ss_pred HHHHHhhcCCCcEEEEeCChHHHHHHHHHHH--ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 011908 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMA--KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 335 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~--~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~ 412 (475)
.+++..-- ..+++||+.+.+.|..+...|. .++.+.++||..++.+|.+.+++|+.|++.|||||+++++|+|+.++
T Consensus 379 rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gv 457 (593)
T KOG0344|consen 379 RQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGV 457 (593)
T ss_pred HHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCc
Confidence 88887653 4599999999999999999984 46899999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhh
Q 011908 413 DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVE 461 (475)
Q Consensus 413 ~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (475)
+.||+||.|.+..+|+ +||.||+|+.|.+++||+..|..........++
T Consensus 458 n~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 458 NLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred ceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 9999999999999999 999999999999999999988875555444433
No 50
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=9.4e-42 Score=348.39 Aligned_cols=334 Identities=21% Similarity=0.308 Sum_probs=261.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
+++.+.+.|... +.+||+.|.++|+.|.+|+|+|+.+|||||||++|++|+++.+.+.. ......+-.+|+++|-++|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHH
Confidence 789999999988 88999999999999999999999999999999999999999998854 1122346789999999999
Q ss_pred HHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC--CCCCCccEEEEeccccccccC
Q 011908 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVG 261 (475)
Q Consensus 186 a~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~l~~vIiDE~H~~~~~~ 261 (475)
++++.+++..+.. |+.+.+.+|+++..++.+...+.+||+++||+.|.-++.... -.+.++.+|||||.|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999998765 777888899999888888888889999999999987765432 258899999999999998877
Q ss_pred cHHHHHHHHHhC---CCCCcEEEEeeecChhHHHHHHHhcCCC---cEEEeecCCcccccCCeEEEEEecc----Ccchh
Q 011908 262 FAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNP---LTVDLVGDSDQKLADGISLYSIATS----MYEKP 331 (475)
Q Consensus 262 ~~~~~~~il~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~k~ 331 (475)
.|.++.-.+.++ -.+.|.+++|||..+. ....+...+.. ..+......... +........ .....
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~~~----i~v~~p~~~~~~~~~~~~ 240 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKKLE----IKVISPVEDLIYDEELWA 240 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCcce----EEEEecCCccccccchhH
Confidence 777766555443 2378999999998753 33333333332 222221111111 111111111 11122
Q ss_pred hHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHcc--CCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCC
Q 011908 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (475)
Q Consensus 332 ~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDi 409 (475)
..+..+.+...+...++||+||+..+|.++..|++. ..+..+||.++.+.|..++++|++|+.+++|||+.++-|||+
T Consensus 241 ~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 241 ALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 344444444445568999999999999999999764 589999999999999999999999999999999999999999
Q ss_pred CCCCEEEecCCCCChhHHHhhccCCCCCC----CcEEEeeCh
Q 011908 410 PNVDLVELVVLERKEVQFLSTQISRPGKS----RVLSEMLDA 447 (475)
Q Consensus 410 p~~~~vI~~~~~~~~~~~~~gR~gR~g~~----~~~~~~~~~ 447 (475)
.+++.||++++|++....+ ||.||+|.. .+++.+...
T Consensus 321 G~vdlVIq~~SP~sV~r~l-QRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFL-QRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHh-HhccccccccCCcccEEEEecC
Confidence 9999999999999988887 899988853 455555444
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-41 Score=355.61 Aligned_cols=328 Identities=20% Similarity=0.295 Sum_probs=239.7
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil 179 (475)
.|+++++++.+.+.+.+.++ +|+++|.++++.+..++++++++|||||||+++.++++..+.. +.+++++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~-~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~i 71 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDF-ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIYI 71 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCC-CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEEE
Confidence 46688899999999999887 5999999999999999999999999999999999999988743 5679999
Q ss_pred eCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 180 APTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 180 ~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
+|+++||.|++++++++.. +..+...+|+...... ....++|+|+||+++..++.+....+.+++++|+||+|.+.
T Consensus 72 ~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred echHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 9999999999999987543 5667777777654322 12357999999999998888766668899999999999998
Q ss_pred ccCcHHHHHHHHHh---CCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEE---EeccCcc-hh
Q 011908 259 SVGFAEDVEVILER---LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS---IATSMYE-KP 331 (475)
Q Consensus 259 ~~~~~~~~~~il~~---~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-k~ 331 (475)
+.+++..++.++.. ++++.|++++|||+++ ...+.. |+...... .. ....+......+ ...+... ..
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~~~---~~-~r~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASLIK---SN-FRPVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCccC---CC-CCCCCeEEEEEecCeeeeccccccc
Confidence 88888888777554 4567899999999875 344443 33322111 00 011110000000 0011111 11
Q ss_pred hHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHHcc--------------------------CCeeeecCCCCHHHHHH
Q 011908 332 SIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS--------------------------YNCEPLHGDISQSQRER 384 (475)
Q Consensus 332 ~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~~--------------------------~~~~~lh~~~~~~~r~~ 384 (475)
..+..++.+ ...++++||||+++++++.++..|... ..+..+||+|++++|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 112333333 456789999999999999999887431 24778999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCC---------ChhHHH--hhccCCCCC--CCcEEEeeCh
Q 011908 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLER---------KEVQFL--STQISRPGK--SRVLSEMLDA 447 (475)
Q Consensus 385 ~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~---------~~~~~~--~gR~gR~g~--~~~~~~~~~~ 447 (475)
+++.|++|.++|||||+++++|+|+|+. .||+.+.++ +..++. +||+||.|. .|.+++++..
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~ 377 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAAS 377 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecC
Confidence 9999999999999999999999999985 566655443 222333 555555553 3556666543
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6.7e-39 Score=329.34 Aligned_cols=319 Identities=19% Similarity=0.199 Sum_probs=228.7
Q ss_pred HHHHH-CCCCCCcHHHHHHhhhhhcCC-cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE-EeCCHHhHHH
Q 011908 112 AALAR-RGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV-LAPTRELAKQ 188 (475)
Q Consensus 112 ~~l~~-~~~~~l~~~Q~~~i~~i~~~~-~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li-l~Pt~~La~Q 188 (475)
+.|.+ .|+. ||++|.++++.++.|+ ++++++|||||||.++.++.+... . ....++.++ ++||++|+.|
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~------~~~~~~rLv~~vPtReLa~Q 77 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I------GAKVPRRLVYVVNRRTVVDQ 77 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c------cccccceEEEeCchHHHHHH
Confidence 33444 4764 9999999999999998 588899999999987654444221 1 122445555 6799999999
Q ss_pred HHHHHHHhCC-------------------------CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHH-h----
Q 011908 189 VEKEFHESAP-------------------------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK-R---- 238 (475)
Q Consensus 189 ~~~~l~~~~~-------------------------~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~-~---- 238 (475)
+++.+.++.. ++++..++||.+...+...+..+++|+|||++.+.+-.. +
T Consensus 78 i~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~ 157 (844)
T TIGR02621 78 VTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGC 157 (844)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccccc
Confidence 9999888764 256788899999999999998899999999655432111 0
Q ss_pred ----CCC---CCCCccEEEEeccccccccCcHHHHHHHHHhC--CCC---CcEEEEeeecChhHHHHHHHhcCCCcEEEe
Q 011908 239 ----NAL---NLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQN---RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 239 ----~~~---~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~--~~~---~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
..+ .+++++++|+||+| ++.+|...+..+++.+ ++. .|+++||||++..+......+..++..+.+
T Consensus 158 ~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V 235 (844)
T TIGR02621 158 GFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPV 235 (844)
T ss_pred ccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeec
Confidence 001 26789999999999 5678999999999964 332 699999999998887777777766665544
Q ss_pred ecCCcccccCCeEEEEEeccCcchhhH-HHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHHccCCeeeecCCCCHHHHH-
Q 011908 307 VGDSDQKLADGISLYSIATSMYEKPSI-IGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRE- 383 (475)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~k~~~-l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~lh~~~~~~~r~- 383 (475)
... ......+..+ +..+...+... +..+... ...++++|||||+++.++.+++.|.+. ....+||+|++.+|.
T Consensus 236 ~~~--~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-g~~lLHG~m~q~dR~~ 311 (844)
T TIGR02621 236 LKK--RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-KFELLTGTLRGAERDD 311 (844)
T ss_pred ccc--cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-CCeEeeCCCCHHHHhh
Confidence 221 1112222332 23232333322 2222111 134678999999999999999999653 238999999999999
Q ss_pred ----HHHHHHhc----CC-------CcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCC-CcEEEee
Q 011908 384 ----RTLSAFRD----GR-------FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS-RVLSEML 445 (475)
Q Consensus 384 ----~~~~~F~~----g~-------~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~-~~~~~~~ 445 (475)
++++.|++ |+ .+|||||+++++|+|++. ++||++.+| ...|+ +||+||.|+. +..+.++
T Consensus 312 ~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 312 LVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 88999987 54 689999999999999986 889887766 35555 6777777664 3446666
Q ss_pred Ch
Q 011908 446 DA 447 (475)
Q Consensus 446 ~~ 447 (475)
..
T Consensus 389 ~~ 390 (844)
T TIGR02621 389 HL 390 (844)
T ss_pred ee
Confidence 54
No 53
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-41 Score=287.92 Aligned_cols=310 Identities=27% Similarity=0.448 Sum_probs=268.3
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
..|.++-+.|++++++-+.||..|+..|.++||...-|+++++|+..|-|||.+|.++.++++. +......+++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie------pv~g~vsvlv 115 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE------PVDGQVSVLV 115 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC------CCCCeEEEEE
Confidence 3467788999999999999999999999999999999999999999999999999999998872 2233456899
Q ss_pred EeCCHHhHHHHHH---HHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 179 LAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 179 l~Pt~~La~Q~~~---~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
+|+|++||.|+.+ +|.++.|+.++.+++||...+...+.+.+-++|+||||++++.+.+...+++++++.+|+|||+
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD 195 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH
Confidence 9999999999865 4666778999999999999998888888889999999999999999999999999999999999
Q ss_pred ccccc-CcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHH
Q 011908 256 QMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSII 334 (475)
Q Consensus 256 ~~~~~-~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (475)
.++++ .....+..+++..|...|+..+|||++.+++.....++.+|..+.+. ++..-..-.+.++++.....+|...+
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KLtLHGLqQ~YvkLke~eKNrkl 274 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKLTLHGLQQYYVKLKENEKNRKL 274 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhcc-chhhhhhhhHHHHHHhhhhhhhhhhh
Confidence 88753 46778889999999999999999999999999999999999988653 23333344566778888888888888
Q ss_pred HHHHHhhcCCCcEEEEeCChHHHHHHHHHHHccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE
Q 011908 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL 414 (475)
Q Consensus 335 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~ 414 (475)
..++..+ .-.+++||+.+... + + | +.+ +|||+.+.+|+|+-.++.
T Consensus 275 ~dLLd~L-eFNQVvIFvKsv~R-------l-------------~----------f---~kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 275 NDLLDVL-EFNQVVIFVKSVQR-------L-------------S----------F---QKR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhhhh-hhcceeEeeehhhh-------h-------------h----------h---hhh-hHHhhhhccccCccccee
Confidence 8888766 46799999987655 1 0 3 123 899999999999999999
Q ss_pred EEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhh
Q 011908 415 VELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 415 vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
+++||+|.+...|+ .+|+||.|..|.++.|++..+.
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 99999999999999 8999999999999999987544
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.6e-39 Score=348.55 Aligned_cols=291 Identities=23% Similarity=0.308 Sum_probs=215.7
Q ss_pred EEccCCCChhHHhHHHHHHHHHhhhhc----cCCCCCceEEEEeCCHHhHHHHHHHHHHh--------------CCCCce
Q 011908 141 GRARTGTGKTLAFGIPILDKIIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEFHES--------------APSLDT 202 (475)
Q Consensus 141 i~~~tGsGKT~~~~~~~l~~~~~~~~~----~~~~~~~~~lil~Pt~~La~Q~~~~l~~~--------------~~~~~~ 202 (475)
|++|||||||++|++++++.+...... .....+.++||++|+++|+.|++++++.. ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 479999999999999999998764311 11134679999999999999999988641 125778
Q ss_pred EEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC-CCCCCCccEEEEeccccccccCcHHHHH----HHHHhCCCCC
Q 011908 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAEDVE----VILERLPQNR 277 (475)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~l~~vIiDE~H~~~~~~~~~~~~----~il~~~~~~~ 277 (475)
...+|+.+..++.+.+.+.++|+|+||++|..++.++ ...++++++|||||+|.+.+..++.++. .+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8889999988877777778999999999998877543 2458999999999999998765665544 4444556778
Q ss_pred cEEEEeeecChhHHHHHHHhcCC--CcEEEeecCCcccccCCeEEEEEeccCcc---------------------hhhHH
Q 011908 278 QSMMFSATMPPWIRSLTNKYLKN--PLTVDLVGDSDQKLADGISLYSIATSMYE---------------------KPSII 334 (475)
Q Consensus 278 ~~l~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------k~~~l 334 (475)
|+|++|||+.+. ..+. .++.. +..+. ....... ..+... +...... ...+.
T Consensus 161 QrIgLSATI~n~-eevA-~~L~g~~pv~Iv-~~~~~r~--~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVA-AFLGGDRPVTVV-NPPAMRH--PQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred eEEEEEeeCCCH-HHHH-HHhcCCCCEEEE-CCCCCcc--cceEEE-EecCchhhccccccccccccchhhhhhhhHHHH
Confidence 999999999873 4444 34432 33332 1111111 111111 1111000 01122
Q ss_pred HHHHHhhcCCCcEEEEeCChHHHHHHHHHHHccC----------------------------------CeeeecCCCCHH
Q 011908 335 GQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY----------------------------------NCEPLHGDISQS 380 (475)
Q Consensus 335 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~----------------------------------~~~~lh~~~~~~ 380 (475)
..++..+..+.++||||||+..||.++..|++.. .+..+||+|+++
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 3445555567899999999999999999885421 156799999999
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccCCCCCC
Q 011908 381 QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438 (475)
Q Consensus 381 ~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g~~ 438 (475)
+|..+++.|++|++++||||+.++.|||++++++||+++.|.+..+|+ ||+||+|+.
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~L-QRiGRAGR~ 371 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGL-QRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHH-HHhCCCCCC
Confidence 999999999999999999999999999999999999999999999998 777777753
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.7e-39 Score=317.42 Aligned_cols=320 Identities=21% Similarity=0.293 Sum_probs=248.1
Q ss_pred HHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHH
Q 011908 112 AALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 112 ~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 190 (475)
..|+. .|+..+++.|.++|..+++++|.++.+|||.||++||.+|++-. ...+|||.|..+|.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHHHH
Confidence 33444 47889999999999999999999999999999999999998754 236899999999999999
Q ss_pred HHHHHhCCCCceEEEEcCCChhHHHHHh---hCC-CCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccC--cHH
Q 011908 191 KEFHESAPSLDTICVYGGTPISHQMRAL---DYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAE 264 (475)
Q Consensus 191 ~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~--~~~ 264 (475)
+.++.. |+....+.+..+..+..... ..+ .++++-+|+++..-...+.+.-..+.+++|||||+++.|| |..
T Consensus 75 ~~l~~~--Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 75 DQLEAA--GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHHHHc--CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 999987 57777777776655543322 233 8999999999865433333334568899999999999997 777
Q ss_pred HHHHH---HHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHH-h
Q 011908 265 DVEVI---LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLIT-E 340 (475)
Q Consensus 265 ~~~~i---l~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~-~ 340 (475)
.+..+ ...++ ++.++.+|||.++.+.......+.......+....+.+.. .+.+......+.... .+.+ .
T Consensus 153 ~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi----~~~v~~~~~~~~q~~-fi~~~~ 226 (590)
T COG0514 153 DYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNL----ALKVVEKGEPSDQLA-FLATVL 226 (590)
T ss_pred hHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchh----hhhhhhcccHHHHHH-HHHhhc
Confidence 66655 44454 7889999999999888776665543332212222221111 011111111112222 2222 1
Q ss_pred hcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecC
Q 011908 341 HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVV 419 (475)
Q Consensus 341 ~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~ 419 (475)
...++..||||.|+..+|.+++.|.. ++++..+||+|+.++|+.+.++|.+++.+|+|||.++.+|||.||+++||||+
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 33456789999999999999999965 69999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 420 LERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 420 ~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
+|.+..+|+ .||+||.|....|++++++.|..
T Consensus 307 lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 307 LPGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred CCCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 999999999 99999999999999999999864
No 56
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8e-37 Score=319.83 Aligned_cols=303 Identities=17% Similarity=0.224 Sum_probs=225.7
Q ss_pred HHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC---CC
Q 011908 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SL 200 (475)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~---~~ 200 (475)
.+-.+.+..+.++++++++|+||||||.++.+++++... .+.+++++.|++++|.|+++.+.+.+. +.
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 445567777888889999999999999999999987751 256899999999999999999865442 22
Q ss_pred ceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc-cccccCcHHHH-HHHHHhCCCCCc
Q 011908 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAEDV-EVILERLPQNRQ 278 (475)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H-~~~~~~~~~~~-~~il~~~~~~~~ 278 (475)
.+.....+.. ......+|+|+|++.|.+.+... ..++++++|||||+| +.++.+++..+ ..+...++++.|
T Consensus 76 ~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlq 148 (819)
T TIGR01970 76 TVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLK 148 (819)
T ss_pred EEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCce
Confidence 3333333222 22334799999999999988764 468999999999999 46665555433 455566788899
Q ss_pred EEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchh-----hHHHHHHHhhcCCCcEEEEeCC
Q 011908 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-----SIIGQLITEHAKGGKCIVFTQT 353 (475)
Q Consensus 279 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~~~~~~~~~~~lVf~~~ 353 (475)
+++||||++... ...++.++..+...+... .+..++......++. ..+..+++. ..+++|||||+
T Consensus 149 lIlmSATl~~~~---l~~~l~~~~vI~~~gr~~-----pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg 218 (819)
T TIGR01970 149 ILAMSATLDGER---LSSLLPDAPVVESEGRSF-----PVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPG 218 (819)
T ss_pred EEEEeCCCCHHH---HHHHcCCCcEEEecCcce-----eeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECC
Confidence 999999998643 356666666665544221 133444433322221 223333332 35789999999
Q ss_pred hHHHHHHHHHHHc----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCCh----h
Q 011908 354 KRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKE----V 425 (475)
Q Consensus 354 ~~~~~~l~~~l~~----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~----~ 425 (475)
.++++.+++.|.+ ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||||++++||+++.++.. .
T Consensus 219 ~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~ 298 (819)
T TIGR01970 219 QAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPK 298 (819)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccc
Confidence 9999999999965 5788999999999999999999999999999999999999999999999999987632 1
Q ss_pred H-------------HHhhccCCCCC--CCcEEEeeChhhhhh
Q 011908 426 Q-------------FLSTQISRPGK--SRVLSEMLDADLLSS 452 (475)
Q Consensus 426 ~-------------~~~gR~gR~g~--~~~~~~~~~~~~~~~ 452 (475)
. ...||+||+|| .|.|+.++++++...
T Consensus 299 ~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 299 TGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQR 340 (819)
T ss_pred cCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHh
Confidence 1 01466666665 799999999887653
No 57
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.3e-37 Score=314.51 Aligned_cols=306 Identities=18% Similarity=0.202 Sum_probs=216.9
Q ss_pred HHHHHHhhhhhcCCcEEEEccCCCChhHHhH---------HHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFG---------IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~---------~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
.+|.++++.+.++++++++|+||||||.+.. ++.+..+.+. .....+.++++++||++||.|+...+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~---~~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI---DPNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc---ccccCCcEEEEECcHHHHHHHHHHHHH
Confidence 6789999999999999999999999998632 2233322110 011235689999999999999999987
Q ss_pred HhC-----CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHH
Q 011908 195 ESA-----PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (475)
Q Consensus 195 ~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~i 269 (475)
+.. .+..+.+.+||... ..........+|+|+|+.. ....+++++++|+||+|++... ++.+..+
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~--~DllL~l 313 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQI--GDIIIAV 313 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccc--hhHHHHH
Confidence 643 24556778888873 2222222357999999652 1124788999999999998764 4555556
Q ss_pred HHhCC-CCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEecc----------CcchhhHHHHHH
Q 011908 270 LERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS----------MYEKPSIIGQLI 338 (475)
Q Consensus 270 l~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~~ 338 (475)
+.... ..+|+++||||++.++..+ ..++.++..+.+.+.. ...+.+++.... ..++...+..+.
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt----~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGT----LFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCc----CCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 65443 3458999999999887766 5788888887764321 122333333221 111222333333
Q ss_pred Hhh-cCCCcEEEEeCChHHHHHHHHHHHc---cCCeeeecCCCCHHHHHHHHHHH-hcCCCcEEEEecccccCCCCCCCC
Q 011908 339 TEH-AKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAF-RDGRFNILIATDVAARGLDVPNVD 413 (475)
Q Consensus 339 ~~~-~~~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~lh~~~~~~~r~~~~~~F-~~g~~~vLvaT~~l~~GiDip~~~ 413 (475)
+.. ..++++||||+++++++.+++.|.+ ++.+..+||+|++. ++.+++| ++|+.+|||||+++++|+|+|+++
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 222 2357899999999999999999965 47899999999975 4667777 689999999999999999999999
Q ss_pred EEEecC---CCC---------ChhHHHhhccCCCCC--CCcEEEeeChhhh
Q 011908 414 LVELVV---LER---------KEVQFLSTQISRPGK--SRVLSEMLDADLL 450 (475)
Q Consensus 414 ~vI~~~---~~~---------~~~~~~~gR~gR~g~--~~~~~~~~~~~~~ 450 (475)
+||+++ .|. +..++ .||+||+|| +|.|+.++++++.
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa-~QRaGRAGR~~~G~c~rLyt~~~~ 516 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMR-TQRKGRVGRVSPGTYVYFYDLDLL 516 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHH-HHhccCcCCCCCCeEEEEECHHHh
Confidence 999998 333 22233 355555554 7999999999876
No 58
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6e-37 Score=317.57 Aligned_cols=330 Identities=19% Similarity=0.285 Sum_probs=242.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhh-cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeC
Q 011908 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~P 181 (475)
...+++.+.+.+...++.++.+.|+.++.... .++|+++++|||||||++++++++..+.+. +.+++++||
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--------~~k~vYivP 84 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--------GGKVVYIVP 84 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--------CCcEEEEeC
Confidence 34477888888888888899999999998765 458999999999999999999999998662 567999999
Q ss_pred CHHhHHHHHHHHHHhC-CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccc
Q 011908 182 TRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (475)
Q Consensus 182 t~~La~Q~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~ 260 (475)
+++||+|.+++|+++- -++++...+|+.....+ .-.+++|+|+||+++..++.+....+..+++||+||+|.+.+.
T Consensus 85 lkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 85 LKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred hHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc
Confidence 9999999999999332 28899999998875442 2234799999999999999887777889999999999998887
Q ss_pred CcHHHHHHHHHhC---CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCC-cccccCCeEEEEEec-----cCcchh
Q 011908 261 GFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS-DQKLADGISLYSIAT-----SMYEKP 331 (475)
Q Consensus 261 ~~~~~~~~il~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~k~ 331 (475)
..+..++.+..+. ....+++++|||+|+. ..++.....++......... ............... +.....
T Consensus 162 ~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~ 240 (766)
T COG1204 162 TRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDN 240 (766)
T ss_pred ccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchH
Confidence 6777777776555 3447999999999873 44444443333311111111 111111111111111 112335
Q ss_pred hHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc--------------------------------------cCCeeee
Q 011908 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--------------------------------------SYNCEPL 373 (475)
Q Consensus 332 ~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~--------------------------------------~~~~~~l 373 (475)
..+...+..+..+++++|||+|+..+...+..+.. ...++++
T Consensus 241 ~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafH 320 (766)
T COG1204 241 LALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320 (766)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccc
Confidence 56677777788899999999999999988888862 0126779
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE----ecCCCCC------hhHHH--hhccCCCCC--CC
Q 011908 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVE----LVVLERK------EVQFL--STQISRPGK--SR 439 (475)
Q Consensus 374 h~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI----~~~~~~~------~~~~~--~gR~gR~g~--~~ 439 (475)
|++++.++|..+.+.|+.|+++||+||+++..|+|+|.-+++| .|++ .. ..+++ .||+||.|- .|
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~-~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDP-KGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred ccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcC-CCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 9999999999999999999999999999999999998766665 2442 22 22222 566666553 25
Q ss_pred cEEEee
Q 011908 440 VLSEML 445 (475)
Q Consensus 440 ~~~~~~ 445 (475)
.++++.
T Consensus 400 ~~~i~~ 405 (766)
T COG1204 400 EAIILA 405 (766)
T ss_pred cEEEEe
Confidence 555555
No 59
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.2e-36 Score=282.06 Aligned_cols=318 Identities=20% Similarity=0.227 Sum_probs=232.6
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC-
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~- 198 (475)
.+++.||..+....+.+ |.|++.|||-|||+++++-+...+.. ..+ ++++++||+-|+.||++.+.+...
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 47899999998877764 99999999999999998888877754 224 799999999999999999999874
Q ss_pred -CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCC
Q 011908 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (475)
Q Consensus 199 -~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~ 277 (475)
.-.+..++|.....+....... ..|+|+||+.+.+-+..+.+++.++.++|+|||||-....-...+...+-+..+++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 3457788888887766555544 59999999999999999999999999999999999766544555555555556888
Q ss_pred cEEEEeeecChhHHH---HHHHhcCCCcEEEeecCCccccc-CCeEEEE-------------------------------
Q 011908 278 QSMMFSATMPPWIRS---LTNKYLKNPLTVDLVGDSDQKLA-DGISLYS------------------------------- 322 (475)
Q Consensus 278 ~~l~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------------------- 322 (475)
.+++|||||...... ......-....+....+.+.... .......
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999998643222 22211111111111111000000 0000000
Q ss_pred -----------------------------------------------------------------------E--------
Q 011908 323 -----------------------------------------------------------------------I-------- 323 (475)
Q Consensus 323 -----------------------------------------------------------------------~-------- 323 (475)
.
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 0
Q ss_pred -------------------eccCcchhhHHHHHHHhhc---CCCcEEEEeCChHHHHHHHHHHHcc-CCee--e------
Q 011908 324 -------------------ATSMYEKPSIIGQLITEHA---KGGKCIVFTQTKRDADRLAHAMAKS-YNCE--P------ 372 (475)
Q Consensus 324 -------------------~~~~~~k~~~l~~~~~~~~---~~~~~lVf~~~~~~~~~l~~~l~~~-~~~~--~------ 372 (475)
..-..-|...+..++++.. .+.++|||++.++.++.+.++|.+. ..+. +
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 0000013344445554432 3569999999999999999999653 2221 2
Q ss_pred -ecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccCCCCC--CCcEEEeeChh
Q 011908 373 -LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGK--SRVLSEMLDAD 448 (475)
Q Consensus 373 -lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g~--~~~~~~~~~~~ 448 (475)
...+|++.++.+++++|++|+++|||||++.++|+|+|+++.||+|++-.|+..++ ||.||.|| .|..+.++..+
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~I-QR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSI-QRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHH-HhhCccccCCCCeEEEEEecC
Confidence 23579999999999999999999999999999999999999999999999988887 66666665 68888888876
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.1e-36 Score=296.53 Aligned_cols=300 Identities=17% Similarity=0.183 Sum_probs=204.1
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhH----
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH---- 213 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~---- 213 (475)
++++++|||||||.+|+++++..+.+ ..+.++++++|+++|+.|+++.+..++.. .+..+.++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhcc
Confidence 47899999999999999999987643 33668999999999999999999998753 3444444332110
Q ss_pred --------HHHHh-h-----CCCCEEEEccHHHHHHHHhCCC----CC--CCccEEEEeccccccccCcHHHHHHHHHhC
Q 011908 214 --------QMRAL-D-----YGVDAVVGTPGRVIDLIKRNAL----NL--SEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 214 --------~~~~~-~-----~~~~Ilv~T~~~l~~~l~~~~~----~~--~~l~~vIiDE~H~~~~~~~~~~~~~il~~~ 273 (475)
..... . ...+|+|+||+++.+.+..... .+ -..+++|+||+|.+.+++++. +..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 00000 1 1268999999999887665211 11 123789999999998764433 55555544
Q ss_pred C-CCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeC
Q 011908 274 P-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQ 352 (475)
Q Consensus 274 ~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~ 352 (475)
. .+.|+++||||+|..+..+...+...+............ ...............+...+..+++....+++++|||+
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERR-FERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccc-cccccceeeccccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 3 478999999999977666655543322111110000000 00001111122223456667777776667889999999
Q ss_pred ChHHHHHHHHHHHcc---CCeeeecCCCCHHHHHH----HHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChh
Q 011908 353 TKRDADRLAHAMAKS---YNCEPLHGDISQSQRER----TLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEV 425 (475)
Q Consensus 353 ~~~~~~~l~~~l~~~---~~~~~lh~~~~~~~r~~----~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~ 425 (475)
++++++.+++.|.+. ..+..+||++++.+|.+ +++.|++|+.+|||||+++++|+|+| ++.||++..| ..
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 999999999999653 25899999999999976 48899999999999999999999995 8899888766 44
Q ss_pred HHH--hhccCCCCCCC----cEEEeeChhhh
Q 011908 426 QFL--STQISRPGKSR----VLSEMLDADLL 450 (475)
Q Consensus 426 ~~~--~gR~gR~g~~~----~~~~~~~~~~~ 450 (475)
+|+ +||+||.|+.+ ..+.+...++.
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 555 66666666432 44555554444
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.1e-36 Score=315.26 Aligned_cols=304 Identities=19% Similarity=0.235 Sum_probs=224.5
Q ss_pred cHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC---C
Q 011908 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---S 199 (475)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~---~ 199 (475)
..+-.+.+..+.++++++++|+||||||.++.+++++... .+.++++++||+++|.|+++.+.+... +
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 4455667778888899999999999999999988886531 134799999999999999999865442 3
Q ss_pred CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc-cccCcH-HHHHHHHHhCCCCC
Q 011908 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-LSVGFA-EDVEVILERLPQNR 277 (475)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~-~~~~~~-~~~~~il~~~~~~~ 277 (475)
..+....++... ......|+|+|++.+.+.+... ..++++++||+||+|+. .+.++. .....++..++++.
T Consensus 78 ~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 78 ETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred ceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 344444444331 1223589999999999988764 46899999999999973 333222 22345566678889
Q ss_pred cEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhh-----HHHHHHHhhcCCCcEEEEeC
Q 011908 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-----IIGQLITEHAKGGKCIVFTQ 352 (475)
Q Consensus 278 ~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~~~~~~~~~~~lVf~~ 352 (475)
|+++||||++.. ....++.++..+...+... .+..++......++.. .+..++.. ..+.+|||||
T Consensus 151 qlilmSATl~~~---~l~~~~~~~~~I~~~gr~~-----pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlp 220 (812)
T PRK11664 151 KLLIMSATLDND---RLQQLLPDAPVIVSEGRSF-----PVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLP 220 (812)
T ss_pred eEEEEecCCCHH---HHHHhcCCCCEEEecCccc-----cceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcC
Confidence 999999999864 2356666666665544311 1344444333333322 23333332 3679999999
Q ss_pred ChHHHHHHHHHHHc----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChh---
Q 011908 353 TKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEV--- 425 (475)
Q Consensus 353 ~~~~~~~l~~~l~~----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~--- 425 (475)
+.++++.+++.|.+ ++.+..+||+|+.++|.++++.|++|+.+|||||+++++|+|||++++||+++.++...
T Consensus 221 g~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~ 300 (812)
T PRK11664 221 GVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDP 300 (812)
T ss_pred CHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccc
Confidence 99999999999964 57788999999999999999999999999999999999999999999999988775421
Q ss_pred --------------HHHhhccCCCCC--CCcEEEeeChhhhhh
Q 011908 426 --------------QFLSTQISRPGK--SRVLSEMLDADLLSS 452 (475)
Q Consensus 426 --------------~~~~gR~gR~g~--~~~~~~~~~~~~~~~ 452 (475)
+...||+||+|| .|.|+.++++++...
T Consensus 301 ~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 301 KTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAER 343 (812)
T ss_pred cCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhh
Confidence 111577777776 799999999887743
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=6e-36 Score=303.10 Aligned_cols=306 Identities=15% Similarity=0.179 Sum_probs=213.2
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
...|+++|.++++.++.+.+.++++|||+|||+++...+ ..+.+ ....++||++||++|+.||.+++.++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-------~~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-------NYEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-------cCCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 358999999999999998899999999999999764432 22222 1133799999999999999999998753
Q ss_pred --CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCC
Q 011908 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~ 276 (475)
...+..+.+|.... .+.+|+|+|++++..... ..+.+++++|+||||++.. ..+..++..+++.
T Consensus 184 ~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~ 249 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNC 249 (501)
T ss_pred ccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhcc
Confidence 23344455554422 246999999999865432 2367899999999999864 3456777777777
Q ss_pred CcEEEEeeecChhHHHH--HHHhcCCCcEEEeecCC--cccccCCeEEEE-----------------------EeccCcc
Q 011908 277 RQSMMFSATMPPWIRSL--TNKYLKNPLTVDLVGDS--DQKLADGISLYS-----------------------IATSMYE 329 (475)
Q Consensus 277 ~~~l~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----------------------~~~~~~~ 329 (475)
++++++||||....... ....++ +....+.... ............ .......
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 89999999986432111 111121 1111110000 000000000000 0011122
Q ss_pred hhhHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccC
Q 011908 330 KPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT-DVAARG 406 (475)
Q Consensus 330 k~~~l~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT-~~l~~G 406 (475)
+...+..++... ..+.+++|||.++++++.+++.|.+ +.++..+||+|+.++|.++++.|++|+..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 333344444333 3467899999999999999999964 6899999999999999999999999999999999 899999
Q ss_pred CCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeCh
Q 011908 407 LDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDA 447 (475)
Q Consensus 407 iDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~ 447 (475)
+|+|++++||+++++.+...++ +||++|.+.++..+.+++-
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~ 451 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDI 451 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEe
Confidence 9999999999999998887776 6666666655555555543
No 63
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6.8e-36 Score=329.56 Aligned_cols=328 Identities=16% Similarity=0.212 Sum_probs=239.2
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhH
Q 011908 108 QDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 108 ~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
.++.+.|++ .|+ +||++|+++++.++++++++++||||||||++++++++... ..+.+++|++||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---------~~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---------LKGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---------hcCCeEEEEECHHHHH
Confidence 445566666 688 79999999999999999999999999999997666555432 2367899999999999
Q ss_pred HHHHHHHHHhCC----CCceEEEEcCCChhHHHH---HhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 187 KQVEKEFHESAP----SLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 187 ~Q~~~~l~~~~~----~~~~~~~~g~~~~~~~~~---~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
.|+++.++.++. ++.+..++|+.+..++.. .+.. .++|+|+||+.+.+.+... . ..+++++|+||||+++
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecc
Confidence 999999998764 345566778887665532 3344 4899999999988766542 1 2679999999999998
Q ss_pred c-----------cCcHHHHHH----HHH----------------------hCCCCCc-EEEEeeecChhHHHHHHHhcCC
Q 011908 259 S-----------VGFAEDVEV----ILE----------------------RLPQNRQ-SMMFSATMPPWIRSLTNKYLKN 300 (475)
Q Consensus 259 ~-----------~~~~~~~~~----il~----------------------~~~~~~~-~l~~SAT~~~~~~~~~~~~~~~ 300 (475)
. .+|..++.. ++. .+++.+| .+++|||.++... ....+.+
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhc
Confidence 6 367666653 322 2344556 5679999987421 2233455
Q ss_pred CcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHH---HHHHHHHHHc-cCCeeeecCC
Q 011908 301 PLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD---ADRLAHAMAK-SYNCEPLHGD 376 (475)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~---~~~l~~~l~~-~~~~~~lh~~ 376 (475)
+..+.+.. .......+...++..+...+ ..+..+++.. +.++||||++++. ++.+++.|.. ++++..+||+
T Consensus 292 ~l~f~v~~--~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 292 LLGFEVGS--GRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred CeEEEecC--CCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 55554422 22233344455444433333 4566667665 5689999999875 5899999954 7999999995
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEe----cccccCCCCCC-CCEEEecCCCC---ChhHHH---------------hhccC
Q 011908 377 ISQSQRERTLSAFRDGRFNILIAT----DVAARGLDVPN-VDLVELVVLER---KEVQFL---------------STQIS 433 (475)
Q Consensus 377 ~~~~~r~~~~~~F~~g~~~vLvaT----~~l~~GiDip~-~~~vI~~~~~~---~~~~~~---------------~gR~g 433 (475)
|...+++|++|+++||||| +++.+|||+|+ +++|||+|.|+ +...+. .||+|
T Consensus 367 -----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~ 441 (1638)
T PRK14701 367 -----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEEL 441 (1638)
T ss_pred -----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhc
Confidence 8899999999999999999 58999999999 99999999999 333221 48888
Q ss_pred CCCCCCcEEEeeChhhhhhcCCCchh
Q 011908 434 RPGKSRVLSEMLDADLLSSQGSPLKE 459 (475)
Q Consensus 434 R~g~~~~~~~~~~~~~~~~~~~~~~~ 459 (475)
|.|..+.++..+...+....+..+.+
T Consensus 442 ~~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 442 KEGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred ccCCcchhHHHhHHHHHHHHHHHhcc
Confidence 88877777766666666554444443
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.7e-35 Score=320.07 Aligned_cols=287 Identities=21% Similarity=0.307 Sum_probs=213.5
Q ss_pred HHHHHHHC-CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH
Q 011908 110 IVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 110 l~~~l~~~-~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 188 (475)
..+.|.+. |+ +||++|..+++.++.|+++++++|||||||..+ +++...+. ..+.+++|++||++|+.|
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~-l~~~~~l~--------~~g~~alIL~PTreLa~Q 138 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFG-LVMSLYLA--------KKGKKSYIIFPTRLLVEQ 138 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHH-HHHHHHHH--------hcCCeEEEEeccHHHHHH
Confidence 33445444 55 899999999999999999999999999999644 44443332 237889999999999999
Q ss_pred HHHHHHHhCC--CCceEEEEcCCCh-----hHHHHHhh-CCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc-
Q 011908 189 VEKEFHESAP--SLDTICVYGGTPI-----SHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS- 259 (475)
Q Consensus 189 ~~~~l~~~~~--~~~~~~~~g~~~~-----~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~- 259 (475)
+++.+++++. ++.+..++|+... ......+. ..++|+|+||++|.+.+. .+....++++|+||+|++++
T Consensus 139 i~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 139 VVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhc
Confidence 9999999876 3445556655432 12223334 348999999999988776 34456699999999999986
Q ss_pred ----------cCcH-HHHHHHHHhCCC------------------------CCcEEEEeeecChh-HHHHHHHhcCCCcE
Q 011908 260 ----------VGFA-EDVEVILERLPQ------------------------NRQSMMFSATMPPW-IRSLTNKYLKNPLT 303 (475)
Q Consensus 260 ----------~~~~-~~~~~il~~~~~------------------------~~~~l~~SAT~~~~-~~~~~~~~~~~~~~ 303 (475)
.||. ..+..++..++. ..|++++|||.++. +.. ..+.++..
T Consensus 217 ~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~ 293 (1176)
T PRK09401 217 SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLG 293 (1176)
T ss_pred ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccce
Confidence 4564 567777766653 68999999999875 332 22334433
Q ss_pred EEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHH---HHHHHHHHHc-cCCeeeecCCCCH
Q 011908 304 VDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRD---ADRLAHAMAK-SYNCEPLHGDISQ 379 (475)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~---~~~l~~~l~~-~~~~~~lh~~~~~ 379 (475)
+.+... ......+...++..+ ++...+..+++.. +.++||||++... ++.+++.|.. ++++..+||+|
T Consensus 294 ~~v~~~--~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-- 365 (1176)
T PRK09401 294 FEVGSP--VFYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-- 365 (1176)
T ss_pred EEecCc--ccccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH--
Confidence 433221 122233444444433 5667777777765 4589999999777 9999999964 79999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEE----ecccccCCCCCC-CCEEEecCCCC
Q 011908 380 SQRERTLSAFRDGRFNILIA----TDVAARGLDVPN-VDLVELVVLER 422 (475)
Q Consensus 380 ~~r~~~~~~F~~g~~~vLva----T~~l~~GiDip~-~~~vI~~~~~~ 422 (475)
.+.+++|++|+++|||| |+++++|+|+|+ +++||+|+.|.
T Consensus 366 ---~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 366 ---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred ---HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 23459999999999999 689999999999 89999999998
No 65
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3e-36 Score=286.62 Aligned_cols=340 Identities=23% Similarity=0.312 Sum_probs=259.2
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCc
Q 011908 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 174 (475)
.+....+++++++.+.+.|+..|+.+|.|.|..+++. ++.|.|.++.++|+||||++.-++-+..++. .|.
T Consensus 191 ~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~ 262 (830)
T COG1202 191 VERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGK 262 (830)
T ss_pred cccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCC
Confidence 4456788999999999999999999999999999986 7789999999999999999999988877764 377
Q ss_pred eEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHH----HhhCCCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 175 ~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++||.-+||+|-|+.|++.+. ++++..-.|....+.... .....+||+|||++-+.+++... ..+.+++.
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGt 341 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGT 341 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccccce
Confidence 899999999999999999998776 444444444433332211 11224899999999998888765 56889999
Q ss_pred EEEeccccccccCcHHHHHHH---HHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEec
Q 011908 249 VVLDEADQMLSVGFAEDVEVI---LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325 (475)
Q Consensus 249 vIiDE~H~~~~~~~~~~~~~i---l~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (475)
|||||+|.+.+...+..+.-+ ++.+.+..|++++|||+.+. ..++..+...+.... ..++ +.-.+..+..
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPV-plErHlvf~~ 414 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPV-PLERHLVFAR 414 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCC-ChhHeeeeec
Confidence 999999998876666655544 45556789999999998653 445555443333331 1111 1122334455
Q ss_pred cCcchhhHHHHHHHhh-------cCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEE
Q 011908 326 SMYEKPSIIGQLITEH-------AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (475)
Q Consensus 326 ~~~~k~~~l~~~~~~~-------~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vL 397 (475)
+..+|.+++..+.++- .-.+|+|||++|+..|.+++..|. +++++.++|++|+..+|..+...|.++++.++
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~V 494 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAV 494 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceE
Confidence 5778888888887642 125799999999999999999995 57999999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEec----CCCC-ChhHHH--hhccCCCCC--CCcEEEeeChhhhhh
Q 011908 398 IATDVAARGLDVPNVDLVELV----VLER-KEVQFL--STQISRPGK--SRVLSEMLDADLLSS 452 (475)
Q Consensus 398 vaT~~l~~GiDip~~~~vI~~----~~~~-~~~~~~--~gR~gR~g~--~~~~~~~~~~~~~~~ 452 (475)
|+|-+++.|+|+|.-. ||+. +..| ++..|. .||+||.+- .|++++++.|+..+.
T Consensus 495 VTTAAL~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~ 557 (830)
T COG1202 495 VTTAALAAGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYH 557 (830)
T ss_pred eehhhhhcCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhc
Confidence 9999999999998655 4442 2222 233333 566666553 488999998876654
No 66
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.9e-34 Score=285.62 Aligned_cols=314 Identities=19% Similarity=0.197 Sum_probs=235.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|. .|++.|..+++.++.|+ +.++.||+|||++|.+|++..... |++++|++||++||.|.++.+..++
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 55 79999999999999987 999999999999999999987643 7899999999999999999999876
Q ss_pred C--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhCC-------------------------CCCCCccEE
Q 011908 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA-------------------------LNLSEVQFV 249 (475)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~-------------------------~~~~~l~~v 249 (475)
. ++.+.+++|+.+... +....+++|+|||...+ .++|.... .....+.++
T Consensus 169 ~~lGlsv~~i~gg~~~~~--r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDE--RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred hhcCCEEEEEeCCCCHHH--HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 5 788889999976443 33345689999999887 34443221 113457899
Q ss_pred EEecccccccc--------------C----cHHHHHHHHHhCC-------------------------------------
Q 011908 250 VLDEADQMLSV--------------G----FAEDVEVILERLP------------------------------------- 274 (475)
Q Consensus 250 IiDE~H~~~~~--------------~----~~~~~~~il~~~~------------------------------------- 274 (475)
||||+|.++-. . +......+...+.
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 99999975311 0 0000001100000
Q ss_pred --------------------------------------------------------------------------------
Q 011908 275 -------------------------------------------------------------------------------- 274 (475)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (475)
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence
Q ss_pred CCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhh-cCCCcEEEEeCC
Q 011908 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQT 353 (475)
Q Consensus 275 ~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~~lVf~~~ 353 (475)
...++.+||||.+.....+...|..++..+.. .... ........+..+..+|...+...+++. ..+.++||||++
T Consensus 407 ~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt--~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t 482 (656)
T PRK12898 407 RYLRLAGMTGTAREVAGELWSVYGLPVVRIPT--NRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS 482 (656)
T ss_pred hhHHHhcccCcChHHHHHHHHHHCCCeEEeCC--CCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 01267889999988777777777766555432 1111 111222334455667777777777664 346789999999
Q ss_pred hHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC---CCC-----EEEecCCCCCh
Q 011908 354 KRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---NVD-----LVELVVLERKE 424 (475)
Q Consensus 354 ~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip---~~~-----~vI~~~~~~~~ 424 (475)
++.++.++..|. .++++..+||+++ ++++.+..|..+...|+|||+++++|+||+ ++. +||+++.|.+.
T Consensus 483 ~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 483 VAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 999999999995 4799999999865 455555666666678999999999999999 666 99999999999
Q ss_pred hHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 425 VQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 425 ~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
..|. +||+||.|+.|.++++++.+|.-
T Consensus 561 r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 561 RIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred HHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 8888 99999999999999999987653
No 67
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=8.8e-34 Score=298.11 Aligned_cols=332 Identities=21% Similarity=0.330 Sum_probs=251.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
....+...|.+.|+..|+.||.+|+..+.+|+|+++..+||||||.+|++|+++.++. ....++|++.||++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~-------~~~a~AL~lYPtnAL 127 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR-------DPSARALLLYPTNAL 127 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh-------CcCccEEEEechhhh
Confidence 3445688888999999999999999999999999999999999999999999999987 334478999999999
Q ss_pred HHHHHHHHHHhCC----CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC----CCCCCCccEEEEeccccc
Q 011908 186 AKQVEKEFHESAP----SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 186 a~Q~~~~l~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~----~~~~~~l~~vIiDE~H~~ 257 (475)
|+++.++|.++.. +++...++|..+..+....+.+.++|+++||++|...+.+. .+.++++++||+||+|.+
T Consensus 128 a~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 128 ANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 9999999998764 34566677777777766777888999999999998755442 234678999999999987
Q ss_pred cccCcHHHHHHHHHhC-------CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEecc----
Q 011908 258 LSVGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS---- 326 (475)
Q Consensus 258 ~~~~~~~~~~~il~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 326 (475)
-.. ||.++..+++++ +.++|++++|||.... ......+.+......+.++.. +.....+.....
T Consensus 208 rGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~---~~~~~~~~~~~p~~~~ 282 (851)
T COG1205 208 RGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGS---PRGLRYFVRREPPIRE 282 (851)
T ss_pred ccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCC---CCCceEEEEeCCcchh
Confidence 665 777777666555 4578999999998653 445555555544443222211 111112222221
Q ss_pred -----CcchhhHHHHHHH-hhcCCCcEEEEeCChHHHHHHH----HHH-Hcc----CCeeeecCCCCHHHHHHHHHHHhc
Q 011908 327 -----MYEKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRLA----HAM-AKS----YNCEPLHGDISQSQRERTLSAFRD 391 (475)
Q Consensus 327 -----~~~k~~~l~~~~~-~~~~~~~~lVf~~~~~~~~~l~----~~l-~~~----~~~~~lh~~~~~~~r~~~~~~F~~ 391 (475)
...+...+..+.. .+.++-++|||+.++..++.+. ..+ ..+ ..+..++|+|..++|.+++..|++
T Consensus 283 ~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~ 362 (851)
T COG1205 283 LAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE 362 (851)
T ss_pred hhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc
Confidence 1123333333333 3446789999999999999986 222 223 468889999999999999999999
Q ss_pred CCCcEEEEecccccCCCCCCCCEEEecCCCC-ChhHHH--hhccCCCCCCCcEEEeeChhh
Q 011908 392 GRFNILIATDVAARGLDVPNVDLVELVVLER-KEVQFL--STQISRPGKSRVLSEMLDADL 449 (475)
Q Consensus 392 g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~-~~~~~~--~gR~gR~g~~~~~~~~~~~~~ 449 (475)
|+..++++|++++.|+|+.+++.||..+.|. +..++. .||+||.++.+..+.++..+.
T Consensus 363 g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~ 423 (851)
T COG1205 363 GELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDP 423 (851)
T ss_pred CCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCc
Confidence 9999999999999999999999999999998 666666 566666665566666666443
No 68
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=292.85 Aligned_cols=347 Identities=18% Similarity=0.237 Sum_probs=248.7
Q ss_pred CCCCCCcHHHHHHhhhhhc-CCcEEEEccCCCChhHHhHHHHHHHHHhhhhc-cCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 117 RGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEK-HGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~-~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
.++.++..+|..++|.+.. +.|+||+||||||||.+|++.++..+.++... .-..++.++++++|+++||.++++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 3566789999999999885 46899999999999999999999999763221 112357889999999999999999999
Q ss_pred HhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC---CCCCCCccEEEEeccccccccCcHHHHHHH
Q 011908 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (475)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~---~~~~~~l~~vIiDE~H~~~~~~~~~~~~~i 269 (475)
+.+. ++.+..++|++...... + ..++|+|+||+++.-.-++. ...++.+++|||||+|.+-+. .|..++.+
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH--H-HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 8887 88899999998765543 1 23799999999995433332 223677999999999966555 88888887
Q ss_pred HHhC-------CCCCcEEEEeeecChhHHHHHHHhcCCCc--EEEeecCCcccccCCeEEEEEeccCc---ch-----hh
Q 011908 270 LERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPL--TVDLVGDSDQKLADGISLYSIATSMY---EK-----PS 332 (475)
Q Consensus 270 l~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~k-----~~ 332 (475)
+.+. ....+++++|||+|+. .+++.....+|. ...+.+.. .+++ +....+..... .. ..
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~y-RPvp--L~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRY-RPVP--LTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccc-cccc--eeeeEEeeecccchhhhhhHHHH
Confidence 7655 3467899999999874 333333332221 12221111 1111 22222222222 11 12
Q ss_pred HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc------------------------cCCeeeecCCCCHHHHHHHHHH
Q 011908 333 IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK------------------------SYNCEPLHGDISQSQRERTLSA 388 (475)
Q Consensus 333 ~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~------------------------~~~~~~lh~~~~~~~r~~~~~~ 388 (475)
.+...++.+..+.+++|||.++..+.+.++.|.+ ....+++|++|..++|..+...
T Consensus 338 ~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 4555666677899999999999999999888854 0236789999999999999999
Q ss_pred HhcCCCcEEEEecccccCCCCCCCCEEE----ecCCCCCh--------hHHHhhccCCCC--CCCcEEEeeChhhhhhcC
Q 011908 389 FRDGRFNILIATDVAARGLDVPNVDLVE----LVVLERKE--------VQFLSTQISRPG--KSRVLSEMLDADLLSSQG 454 (475)
Q Consensus 389 F~~g~~~vLvaT~~l~~GiDip~~~~vI----~~~~~~~~--------~~~~~gR~gR~g--~~~~~~~~~~~~~~~~~~ 454 (475)
|..|.++||+||..+.+|+++|+--++| .||+.... .-|+.||+||.+ ..|.++++.+.|....+.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 9999999999999999999998654444 24444321 122267777765 358999999998887777
Q ss_pred CCchhhhhhhhhhhccC
Q 011908 455 SPLKEVETCTMTWVAGL 471 (475)
Q Consensus 455 ~~~~~~~~~~~~~~~~~ 471 (475)
..+......+++.+..+
T Consensus 498 sLl~~~~piES~~~~~L 514 (1230)
T KOG0952|consen 498 SLLTGQNPIESQLLPCL 514 (1230)
T ss_pred HHHcCCChhHHHHHHHH
Confidence 77776666666555443
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.9e-33 Score=271.36 Aligned_cols=288 Identities=19% Similarity=0.214 Sum_probs=196.3
Q ss_pred HHHHHhhhhhcCCc--EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC----
Q 011908 125 IQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---- 198 (475)
Q Consensus 125 ~Q~~~i~~i~~~~~--~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~---- 198 (475)
+|.++++.+.++.+ +++.+|||||||.+|+++++.. +.++++++|+++|++|+++.+++++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 59999999998864 7889999999999999888742 33589999999999999999888762
Q ss_pred --CCceEEEEcCCChhH--------------------HHHHhhCCCCEEEEccHHHHHHHHhC----C----CCCCCccE
Q 011908 199 --SLDTICVYGGTPISH--------------------QMRALDYGVDAVVGTPGRVIDLIKRN----A----LNLSEVQF 248 (475)
Q Consensus 199 --~~~~~~~~g~~~~~~--------------------~~~~~~~~~~Ilv~T~~~l~~~l~~~----~----~~~~~l~~ 248 (475)
+..+..+.|...... +.......+.|+++||+.+..++... . ..+.++++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 334444555422110 00111234789999999997665431 1 12578999
Q ss_pred EEEeccccccccCc-----HHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHh--cCCCcEEEeecCC----c------
Q 011908 249 VVLDEADQMLSVGF-----AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY--LKNPLTVDLVGDS----D------ 311 (475)
Q Consensus 249 vIiDE~H~~~~~~~-----~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~----~------ 311 (475)
+|+||+|.+..++. ......+++......++++||||+++.+...+... +..+... +.+.. +
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~ 227 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEA 227 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhc
Confidence 99999999875432 12233344444445799999999998877666554 3333322 22220 0
Q ss_pred -------ccccCCeEEEEEeccCcchhhHHHHHHHhh------cCCCcEEEEeCChHHHHHHHHHHHc---cCCeeeecC
Q 011908 312 -------QKLADGISLYSIATSMYEKPSIIGQLITEH------AKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHG 375 (475)
Q Consensus 312 -------~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~------~~~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~lh~ 375 (475)
......+...... ....+...+..+.+.. ..+++++|||+++..++.++..|.+ ++.+..+||
T Consensus 228 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 228 DNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 0011123333333 3333333333333322 2467999999999999999999975 357888999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccCCCC
Q 011908 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPG 436 (475)
Q Consensus 376 ~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g 436 (475)
.+++.+|.+. ++.+|||||+++++|+|+|.. +|| ++ |.+...|+ ||+||.|
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yi-qR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFW-QRLGRLG 357 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHh-hhcccCC
Confidence 9999988754 478999999999999999986 565 44 77777776 9999987
No 70
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.8e-33 Score=304.85 Aligned_cols=291 Identities=20% Similarity=0.333 Sum_probs=211.6
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHH
Q 011908 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
.++.+.+.+....+||++|+.+++.++.|+++++++|||||||. +.+++...+.. .+++++|++||++||.
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~ 135 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVI 135 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHH
Confidence 44555666655568999999999999999999999999999997 54555544422 2678999999999999
Q ss_pred HHHHHHHHhCCC--Cce---EEEEcCCChhHHH---HHhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 188 QVEKEFHESAPS--LDT---ICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 188 Q~~~~l~~~~~~--~~~---~~~~g~~~~~~~~---~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
|+++.++++... +.. .+++|+.+...+. ..+.. +++|+|+||++|.+.+..-. . +++++|+||+|+++
T Consensus 136 Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 136 QVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhh
Confidence 999999998753 332 2456887765542 23333 48999999999988766421 2 89999999999998
Q ss_pred c-----------cCcHHH-HHHHH----------------------HhCCCCCc--EEEEeeec-ChhHHHHHHHhcCCC
Q 011908 259 S-----------VGFAED-VEVIL----------------------ERLPQNRQ--SMMFSATM-PPWIRSLTNKYLKNP 301 (475)
Q Consensus 259 ~-----------~~~~~~-~~~il----------------------~~~~~~~~--~l~~SAT~-~~~~~~~~~~~~~~~ 301 (475)
+ .||..+ +..++ ..+++..| ++++|||. |..... .++.++
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~l 289 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFREL 289 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccc
Confidence 7 456543 33332 23444555 56789995 443332 234444
Q ss_pred cEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCCh---HHHHHHHHHHHc-cCCeeeecCCC
Q 011908 302 LTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK---RDADRLAHAMAK-SYNCEPLHGDI 377 (475)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~---~~~~~l~~~l~~-~~~~~~lh~~~ 377 (475)
..+.+... ......+...++..+ .+...+..+++.. +.++||||++. +.++.+++.|.+ ++++..+||++
T Consensus 290 l~~~v~~~--~~~~r~I~~~~~~~~--~~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~ 363 (1171)
T TIGR01054 290 LGFEVGGG--SDTLRNVVDVYVEDE--DLKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATK 363 (1171)
T ss_pred cceEecCc--cccccceEEEEEecc--cHHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCC
Confidence 44443221 122233444443332 2244566666665 46899999999 999999999964 68999999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEe----cccccCCCCCC-CCEEEecCCCCC
Q 011908 378 SQSQRERTLSAFRDGRFNILIAT----DVAARGLDVPN-VDLVELVVLERK 423 (475)
Q Consensus 378 ~~~~r~~~~~~F~~g~~~vLvaT----~~l~~GiDip~-~~~vI~~~~~~~ 423 (475)
+ +.++++|++|+++||||| +++++|+|+|+ +++||+||.|+.
T Consensus 364 ~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 364 P----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred C----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 7 368999999999999995 89999999999 899999999976
No 71
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.1e-32 Score=295.45 Aligned_cols=321 Identities=19% Similarity=0.231 Sum_probs=230.8
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
..++++||.+++..++.+ +.++++|||+|||+++++.+...+. ..+.++||++||++|+.|+.+.+++++.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--------KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--------hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 347999999999988876 9999999999999999888877662 2356799999999999999999998764
Q ss_pred --CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCC
Q 011908 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~ 276 (475)
+..+..++|+...... .....+.+|+|+||+.+...+....+.+.+++++|+||||++........+...+....+.
T Consensus 84 ~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 2366677777765543 3344457999999999988887777788899999999999987554444444445555567
Q ss_pred CcEEEEeeecChhHH---HHHHHhc------------------CCCcEEEeecCCccc----------------------
Q 011908 277 RQSMMFSATMPPWIR---SLTNKYL------------------KNPLTVDLVGDSDQK---------------------- 313 (475)
Q Consensus 277 ~~~l~~SAT~~~~~~---~~~~~~~------------------~~~~~~~~~~~~~~~---------------------- 313 (475)
+++++|||||..... ....... ..+....+.-.....
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 789999999843221 1111111 000000000000000
Q ss_pred -cc--C------------------CeEE-------------------------------------------E--------
Q 011908 314 -LA--D------------------GISL-------------------------------------------Y-------- 321 (475)
Q Consensus 314 -~~--~------------------~~~~-------------------------------------------~-------- 321 (475)
.. . .+.. .
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 00 0 0000 0
Q ss_pred -----------------EEeccCcchhhHHHHHHHhh---cCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCC----
Q 011908 322 -----------------SIATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGD---- 376 (475)
Q Consensus 322 -----------------~~~~~~~~k~~~l~~~~~~~---~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~---- 376 (475)
........|...+..++++. ..++++||||++++.++.+.+.|. .++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~ 402 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKD 402 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 00001122444455555443 357899999999999999999994 46788888886
Q ss_pred ----CCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccCCCCC--CCcEEEeeChhhh
Q 011908 377 ----ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGK--SRVLSEMLDADLL 450 (475)
Q Consensus 377 ----~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g~--~~~~~~~~~~~~~ 450 (475)
|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+||++.+...++ ||+||.|| .|.+++++..+..
T Consensus 403 ~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~i-QR~GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 403 GDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSI-QRKGRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred ccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHH-HHhcccCcCCCCEEEEEEeCCCh
Confidence 9999999999999999999999999999999999999999999999988887 67777666 5778888875543
No 72
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.4e-33 Score=282.61 Aligned_cols=305 Identities=19% Similarity=0.167 Sum_probs=207.0
Q ss_pred CCCcHHHHHHhhhhhcC---CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 120 SKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~---~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.+|++||.+++..+..+ +..++++|||+|||++++.++. .+ +..+||+||+..|+.||.++|.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 47999999999998743 3689999999999999865543 33 345999999999999999999998
Q ss_pred CC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh--------CCCCCCCccEEEEeccccccccCcHHHH
Q 011908 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--------NALNLSEVQFVVLDEADQMLSVGFAEDV 266 (475)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~--------~~~~~~~l~~vIiDE~H~~~~~~~~~~~ 266 (475)
+. ...+..++|+.... .....+|+|+|++.+.+...+ ..+.-..++++|+||+|++.. ...
T Consensus 322 ~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~f 392 (732)
T TIGR00603 322 STIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMF 392 (732)
T ss_pred cCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHH
Confidence 63 33445555543211 122368999999987543221 112224688999999999743 445
Q ss_pred HHHHHhCCCCCcEEEEeeecChhHHH--HHHHhcCCCcEEEeecC--CcccccCCeEEEEEec-----------------
Q 011908 267 EVILERLPQNRQSMMFSATMPPWIRS--LTNKYLKNPLTVDLVGD--SDQKLADGISLYSIAT----------------- 325 (475)
Q Consensus 267 ~~il~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------------- 325 (475)
+.++..+ .....+++||||...-.. .+..+++ |......-. .............+.+
T Consensus 393 r~il~~l-~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 393 RRVLTIV-QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHhc-CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 5666666 345689999998643211 1122222 222211000 0000111111111111
Q ss_pred ------cCcchhhHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHHccCCeeeecCCCCHHHHHHHHHHHhcC-CCcEE
Q 011908 326 ------SMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG-RFNIL 397 (475)
Q Consensus 326 ------~~~~k~~~l~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~lh~~~~~~~r~~~~~~F~~g-~~~vL 397 (475)
....|...+..+++.+ ..+.++||||.+.+.++.++..| .+..+||+++..+|.++++.|++| .+++|
T Consensus 471 k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 1123445555566654 36789999999999999998887 356799999999999999999875 78999
Q ss_pred EEecccccCCCCCCCCEEEecCCC-CChhHHH--hhccCCCCCCCcE-------EEeeChhhhh
Q 011908 398 IATDVAARGLDVPNVDLVELVVLE-RKEVQFL--STQISRPGKSRVL-------SEMLDADLLS 451 (475)
Q Consensus 398 vaT~~l~~GiDip~~~~vI~~~~~-~~~~~~~--~gR~gR~g~~~~~-------~~~~~~~~~~ 451 (475)
|+|+++.+|+|+|++++||+++.| .+...++ .||++|.+++|.+ +.+++++..+
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 999999999999999999999987 4776666 5555555555554 7788877664
No 73
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.6e-33 Score=278.11 Aligned_cols=320 Identities=21% Similarity=0.273 Sum_probs=226.1
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
....+++||.+.....+ ++|.|+++|||+|||++|+..+++++.. ....++++++|++-|..|+...+..++
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhcc
Confidence 44589999999999999 9999999999999999999999988744 234679999999999999998888887
Q ss_pred CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCC-CCCccEEEEeccccccccC-cHHHHHHHHHhCCC
Q 011908 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN-LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ 275 (475)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~-~~~l~~vIiDE~H~~~~~~-~~~~~~~il~~~~~ 275 (475)
.+..+....||.........+-...+|+|.||+.+.+.++..... ++.+.++||||||+-.... +...++..+.....
T Consensus 131 ~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 131 IPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred CcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 665555556664444444455556899999999999888775433 5889999999999976543 55666677777666
Q ss_pred CCcEEEEeeecChhHHHHHHHhcC---C----------------------CcEE--------------------------
Q 011908 276 NRQSMMFSATMPPWIRSLTNKYLK---N----------------------PLTV-------------------------- 304 (475)
Q Consensus 276 ~~~~l~~SAT~~~~~~~~~~~~~~---~----------------------~~~~-------------------------- 304 (475)
..|+|++||||............. . |..+
T Consensus 211 ~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 211 GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 669999999986433221111000 0 0000
Q ss_pred --E------eecC--------------Cccc--cc--------------CCeE------------EEE------------
Q 011908 305 --D------LVGD--------------SDQK--LA--------------DGIS------------LYS------------ 322 (475)
Q Consensus 305 --~------~~~~--------------~~~~--~~--------------~~~~------------~~~------------ 322 (475)
. ..+. ..+. +. ..+. ...
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 0 0000 0000 00 0000 000
Q ss_pred ------------------EeccCcchhhHHHHHHHhh---cCCCcEEEEeCChHHHHHHHHHHHc----cCCeeee----
Q 011908 323 ------------------IATSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPL---- 373 (475)
Q Consensus 323 ------------------~~~~~~~k~~~l~~~~~~~---~~~~~~lVf~~~~~~~~~l~~~l~~----~~~~~~l---- 373 (475)
.......|.+.+.+++.+. .+..++||||.+++.|+.+..+|.. +++...+
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 0000111333333333322 2356899999999999999999863 1222222
Q ss_pred ----cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccCCCCC--CCcEEEeeCh
Q 011908 374 ----HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGK--SRVLSEMLDA 447 (475)
Q Consensus 374 ----h~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g~--~~~~~~~~~~ 447 (475)
..+|++.++.+++++|++|+++|||||++.|+|+||+.++.||-||...++...+ ||.|| || .|+|+++++.
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmI-QrrGR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMV-QRRGR-GRARNSKCVLLTTG 528 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHH-HHhcc-ccccCCeEEEEEcc
Confidence 2489999999999999999999999999999999999999999999999977776 88888 65 5888888883
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.2e-32 Score=278.80 Aligned_cols=314 Identities=18% Similarity=0.166 Sum_probs=230.8
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|. .|++.|......+..|+ +.+++||+|||++|.+|++-..+. |.++.|++||+.||.|.++.+..++
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 55 68888888887777654 999999999999999999644433 6679999999999999999999988
Q ss_pred C--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhC------CCCCCCccEEEEecccccccc-C------
Q 011908 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSV-G------ 261 (475)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~l~~vIiDE~H~~~~~-~------ 261 (475)
. ++.+.+++|+.+...+...+ .++|++|||.+| .++++.+ ...+..++++|+||+|+++-. .
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 6 67888899998866554444 479999999999 7777655 346788999999999997531 0
Q ss_pred ---------cHHHHHHHHHhCC----------------------------------------------------------
Q 011908 262 ---------FAEDVEVILERLP---------------------------------------------------------- 274 (475)
Q Consensus 262 ---------~~~~~~~il~~~~---------------------------------------------------------- 274 (475)
.......+.+.+.
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 0000011111110
Q ss_pred -----------------------------------------------------------CCCcEEEEeeecChhHHHHHH
Q 011908 275 -----------------------------------------------------------QNRQSMMFSATMPPWIRSLTN 295 (475)
Q Consensus 275 -----------------------------------------------------------~~~~~l~~SAT~~~~~~~~~~ 295 (475)
....+.+||+|.......+..
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 359 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEK 359 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHH
Confidence 002466677776544444333
Q ss_pred HhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhH-HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeee
Q 011908 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (475)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~l 373 (475)
.|. ...+.+.........+ .+. .+..+..+|... +..+.+.+..+.++||||++++.++.++..|.+ ++++..+
T Consensus 360 iY~--l~vv~IPtnkp~~R~d-~~d-~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 360 IYN--LEVVVVPTNRPVIRKD-LSD-LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred HhC--CCEEEeCCCCCeeeee-CCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 332 2222222211111111 111 122233344443 444555667899999999999999999999964 7899999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC-------CCEEEecCCCCChhHHH--hhccCCCCCCCcEEEe
Q 011908 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN-------VDLVELVVLERKEVQFL--STQISRPGKSRVLSEM 444 (475)
Q Consensus 374 h~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~-------~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~ 444 (475)
|++ +.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.+...+. .||+||.|.+|.+.++
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 999 789999999999999999999999999999998 55999999999998888 9999999999999999
Q ss_pred eChhhhh
Q 011908 445 LDADLLS 451 (475)
Q Consensus 445 ~~~~~~~ 451 (475)
++.+|.-
T Consensus 514 ls~eD~l 520 (745)
T TIGR00963 514 LSLEDNL 520 (745)
T ss_pred EeccHHH
Confidence 9987664
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.2e-32 Score=283.42 Aligned_cols=314 Identities=16% Similarity=0.183 Sum_probs=229.1
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|. .|++.|..+...+..|+ +.++.||+|||+++++|++...+. |.+++|++||+.||.|.++.+..++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 55 78999999988887765 999999999999999999866644 8889999999999999999999877
Q ss_pred C--CCceEEEEcCCC-hhHHHHHhhCCCCEEEEccHHH-HHHHHhCC------CCCCCccEEEEecccccccc-------
Q 011908 198 P--SLDTICVYGGTP-ISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV------- 260 (475)
Q Consensus 198 ~--~~~~~~~~g~~~-~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~l~~vIiDE~H~~~~~------- 260 (475)
. ++.+.++.|+.+ ...+.. ..+++|++|||+.+ .+++.... .....+.++|+||+|+++-.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~--~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKA--IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHH--hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 6 678888999888 444333 24589999999998 45554321 24578999999999986411
Q ss_pred ---------CcHHHHHHHHHhCCC--------------------------------------------------------
Q 011908 261 ---------GFAEDVEVILERLPQ-------------------------------------------------------- 275 (475)
Q Consensus 261 ---------~~~~~~~~il~~~~~-------------------------------------------------------- 275 (475)
........+...+..
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~ 301 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKR 301 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhc
Confidence 011111111111100
Q ss_pred -------------------------------------------------------------CCcEEEEeeecChhHHHHH
Q 011908 276 -------------------------------------------------------------NRQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 276 -------------------------------------------------------------~~~~l~~SAT~~~~~~~~~ 294 (475)
...+.+||+|.......+.
T Consensus 302 d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~ 381 (790)
T PRK09200 302 DVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFF 381 (790)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHH
Confidence 0145666776644333333
Q ss_pred HHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHHc-cCCeee
Q 011908 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEP 372 (475)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~ 372 (475)
..| +...+.+.... .......+ ..+..+..+|...+...+.+ +..+.++||||++++.++.++..|.+ ++++..
T Consensus 382 ~~Y--~l~v~~IPt~k-p~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~ 457 (790)
T PRK09200 382 EVY--NMEVVQIPTNR-PIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNL 457 (790)
T ss_pred HHh--CCcEEECCCCC-CcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 323 22233322211 11111111 12333445677777666654 45688999999999999999999954 799999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCC---CCCC-----EEEecCCCCChhHHH--hhccCCCCCCCcEE
Q 011908 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV---PNVD-----LVELVVLERKEVQFL--STQISRPGKSRVLS 442 (475)
Q Consensus 373 lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDi---p~~~-----~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~ 442 (475)
+||++...++..+...+..| .|+|||+++++|+|+ |++. +||+++.|.+...|. .||+||.|++|.++
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~ 535 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 535 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE
Confidence 99999988888777777666 799999999999999 6998 999999999999998 99999999999999
Q ss_pred EeeChhhhh
Q 011908 443 EMLDADLLS 451 (475)
Q Consensus 443 ~~~~~~~~~ 451 (475)
++++.+|.-
T Consensus 536 ~~is~eD~l 544 (790)
T PRK09200 536 FFISLEDDL 544 (790)
T ss_pred EEEcchHHH
Confidence 999987663
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.4e-32 Score=280.12 Aligned_cols=316 Identities=17% Similarity=0.199 Sum_probs=220.3
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-- 198 (475)
.++|+|.+++..+...+..+++++||+|||++|.+|++...+. +..++|++|+++||.|+++.+..++.
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 4566666666666655568999999999999999998766643 55699999999999999999877654
Q ss_pred CCceEEEEcCCC---hhHHHHHhhCCCCEEEEccHHH-HHHHHh------CCCCCCCccEEEEeccccccccC-------
Q 011908 199 SLDTICVYGGTP---ISHQMRALDYGVDAVVGTPGRV-IDLIKR------NALNLSEVQFVVLDEADQMLSVG------- 261 (475)
Q Consensus 199 ~~~~~~~~g~~~---~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~------~~~~~~~l~~vIiDE~H~~~~~~------- 261 (475)
++.+.+.+++.. ..........+++|++|||+.| .+++.. ....+..+.++|+||+|.++-..
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 666666665421 2222233335699999999999 455532 23346789999999999974210
Q ss_pred ---------cHHHHHHHHHhCCC---------------------------------------------------------
Q 011908 262 ---------FAEDVEVILERLPQ--------------------------------------------------------- 275 (475)
Q Consensus 262 ---------~~~~~~~il~~~~~--------------------------------------------------------- 275 (475)
.......+...+.+
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 11111111111100
Q ss_pred ------------------------------------------------------------CCcEEEEeeecChhHHHHHH
Q 011908 276 ------------------------------------------------------------NRQSMMFSATMPPWIRSLTN 295 (475)
Q Consensus 276 ------------------------------------------------------------~~~~l~~SAT~~~~~~~~~~ 295 (475)
..++.+||+|.......+..
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 12567777776554444443
Q ss_pred HhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeee
Q 011908 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPL 373 (475)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~l 373 (475)
.| +...+.+....... .... ...+..+..+|...+...+.+ +..+.++||||++++.++.++..|. .++++..+
T Consensus 379 iY--~l~v~~IPt~kp~~-r~d~-~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L 454 (762)
T TIGR03714 379 TY--SLSVVKIPTNKPII-RIDY-PDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLL 454 (762)
T ss_pred Hh--CCCEEEcCCCCCee-eeeC-CCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe
Confidence 33 23333332211111 1111 112334445666666665554 4678899999999999999999995 47999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC---------CCCEEEecCCCCChhHH-HhhccCCCCCCCcEEE
Q 011908 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---------NVDLVELVVLERKEVQF-LSTQISRPGKSRVLSE 443 (475)
Q Consensus 374 h~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip---------~~~~vI~~~~~~~~~~~-~~gR~gR~g~~~~~~~ 443 (475)
||++...++..+...++.| .|+|||+++++|+|+| ++.+|+++++|.....- ..||+||.|++|.+.+
T Consensus 455 ~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 455 NAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred cCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHHHHhhhcccCCCCceeEEE
Confidence 9999988887777766666 7999999999999999 99999999999876552 2999999999999999
Q ss_pred eeChhhhh
Q 011908 444 MLDADLLS 451 (475)
Q Consensus 444 ~~~~~~~~ 451 (475)
+++.+|.-
T Consensus 533 ~is~eD~l 540 (762)
T TIGR03714 533 FVSLEDDL 540 (762)
T ss_pred EEccchhh
Confidence 99987764
No 77
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-33 Score=257.49 Aligned_cols=273 Identities=28% Similarity=0.461 Sum_probs=211.3
Q ss_pred CCceEEEEeCCHHhHHHHHHHHHHhCC-----CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCc
Q 011908 172 RNPLCLVLAPTRELAKQVEKEFHESAP-----SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~l~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l 246 (475)
+.++++|+-|+++||+|.++.++++-. .++..++.||...+.+...+.++.+|+||||+++.+.+....+.+...
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 457899999999999999996666432 345667888898899999999999999999999999999888889999
Q ss_pred cEEEEeccccccccCcHHHHHHHHHhCCC------CCcEEEEeeecCh-hHHHHHHHhcCCCcEEEeecCCcccccCCeE
Q 011908 247 QFVVLDEADQMLSVGFAEDVEVILERLPQ------NRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319 (475)
Q Consensus 247 ~~vIiDE~H~~~~~~~~~~~~~il~~~~~------~~~~l~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (475)
.++|+||++-++..++.+.+..+...++. ..|.+++|||+.. ++..+....+.-|..+.+.++.. ++....
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~--vpetvH 442 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDL--VPETVH 442 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccc--cchhhc
Confidence 99999999999998888888888777753 4689999999742 22333334444455554433221 111111
Q ss_pred EEEEec----------------------------------cCcchh-----hHHHHHHHhhcCCCcEEEEeCChHHHHHH
Q 011908 320 LYSIAT----------------------------------SMYEKP-----SIIGQLITEHAKGGKCIVFTQTKRDADRL 360 (475)
Q Consensus 320 ~~~~~~----------------------------------~~~~k~-----~~l~~~~~~~~~~~~~lVf~~~~~~~~~l 360 (475)
...... ...... +.-...++++ .-.++||||.++.+++.+
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnL 521 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNL 521 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHH
Confidence 111000 000001 1111222333 356999999999999999
Q ss_pred HHHHHc----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCC
Q 011908 361 AHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISR 434 (475)
Q Consensus 361 ~~~l~~----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR 434 (475)
..++.+ .+.|.++||+..+.||.+.++.|+.+..+.||||+++.+|+||.++..||+...|..-..|+ +||+||
T Consensus 522 er~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 522 ERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred HHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccch
Confidence 999954 48899999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred CCCCCcEEEeeCh
Q 011908 435 PGKSRVLSEMLDA 447 (475)
Q Consensus 435 ~g~~~~~~~~~~~ 447 (475)
+-|-|.++.++..
T Consensus 602 aermglaislvat 614 (725)
T KOG0349|consen 602 AERMGLAISLVAT 614 (725)
T ss_pred hhhcceeEEEeec
Confidence 9999999888754
No 78
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-32 Score=287.00 Aligned_cols=327 Identities=16% Similarity=0.215 Sum_probs=250.1
Q ss_pred HHHHHHH-HCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHH
Q 011908 109 DIVAALA-RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 109 ~l~~~l~-~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
+....+. ..|...+++-|.++|..++.|++.++.+|||.||++||.+|++-. ++..++|.|-.+|.+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHH
Confidence 3444444 358889999999999999999999999999999999999988643 457899999999999
Q ss_pred HHHHHHHHhCCCCceEEEEcCCChhHHH---HHhhC---CCCEEEEccHHHHHH--HHhCCCCCCC---ccEEEEecccc
Q 011908 188 QVEKEFHESAPSLDTICVYGGTPISHQM---RALDY---GVDAVVGTPGRVIDL--IKRNALNLSE---VQFVVLDEADQ 256 (475)
Q Consensus 188 Q~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~~~~---~~~Ilv~T~~~l~~~--l~~~~~~~~~---l~~vIiDE~H~ 256 (475)
++...+... ++....+.++....++. +.+.. .++|++.||+++... +......+.. +.++||||||+
T Consensus 319 DQv~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 319 DQVTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHHHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 888877443 67777777777765332 22333 389999999998642 1212222333 88999999999
Q ss_pred ccccC--cHHHHHHH---HHhCCCCCcEEEEeeecChhHHHHHHHhc--CCCcEEEeecCCcccccCCeEEEEEeccCcc
Q 011908 257 MLSVG--FAEDVEVI---LERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSMYE 329 (475)
Q Consensus 257 ~~~~~--~~~~~~~i---l~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (475)
...|+ |...++.+ ..+. +...++++|||.++.++..+..-+ .++..... .. ....+..........+
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~-~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~--sf---nR~NL~yeV~~k~~~~ 470 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRF-PGVPFIALTATATERVREDVIRSLGLRNPELFKS--SF---NRPNLKYEVSPKTDKD 470 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhC-CCCCeEEeehhccHHHHHHHHHHhCCCCcceecc--cC---CCCCceEEEEeccCcc
Confidence 99987 66665544 3344 446799999999988876555544 34443321 11 1111222222222233
Q ss_pred hhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCC
Q 011908 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (475)
Q Consensus 330 k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiD 408 (475)
....+....+.......+||||.++.+++.++..|.+ +..+..+|++|++.+|+.+...|..++++|+|||=++.+|||
T Consensus 471 ~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGId 550 (941)
T KOG0351|consen 471 ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGID 550 (941)
T ss_pred chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCC
Confidence 3444444555555788999999999999999999965 579999999999999999999999999999999999999999
Q ss_pred CCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCC
Q 011908 409 VPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGS 455 (475)
Q Consensus 409 ip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~ 455 (475)
.|+|+.||||..|.+...|. .||+||.|....|++|++..|...+..
T Consensus 551 K~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ 599 (941)
T KOG0351|consen 551 KPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRR 599 (941)
T ss_pred CCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHH
Confidence 99999999999999999999 999999999999999999998865443
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=4.4e-31 Score=274.86 Aligned_cols=308 Identities=19% Similarity=0.238 Sum_probs=213.9
Q ss_pred CCCCcHHHHHHhhhhhcC---CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 119 ISKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~---~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
...||+.|+++++.+.++ ++.++.|+||||||.+|+.++...+.. |.+++|++|+++|+.|+++.+++
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 347999999999999874 679999999999999998887777633 77899999999999999999999
Q ss_pred hCCCCceEEEEcCCChhHHHHH----hhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCc------HHH
Q 011908 196 SAPSLDTICVYGGTPISHQMRA----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF------AED 265 (475)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~------~~~ 265 (475)
.+ +..+..++|+.+..++... ....++|+|||+..+. ..+++++++|+||+|.....+. ...
T Consensus 213 ~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 213 RF-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred Hh-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 77 4678888888876554332 2234899999987653 3478999999999997653321 122
Q ss_pred HHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEecc--C---c-chhhHHHHHHH
Q 011908 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS--M---Y-EKPSIIGQLIT 339 (475)
Q Consensus 266 ~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~-~k~~~l~~~~~ 339 (475)
+ .+++....+.+++++||||+.+....+.. +....+.+...........+........ . . -...++..+.+
T Consensus 285 v-a~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 285 L-AVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred H-HHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 2 23334457889999999987654443322 1222222222111111111111111000 0 0 01234555556
Q ss_pred hhcCCCcEEEEeCChH------------------------------------------------------------HHHH
Q 011908 340 EHAKGGKCIVFTQTKR------------------------------------------------------------DADR 359 (475)
Q Consensus 340 ~~~~~~~~lVf~~~~~------------------------------------------------------------~~~~ 359 (475)
.+..++++|||+|.+. -++.
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 6777889999987531 3357
Q ss_pred HHHHHHc---cCCeeeecCCCC--HHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCC--hh-------
Q 011908 360 LAHAMAK---SYNCEPLHGDIS--QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERK--EV------- 425 (475)
Q Consensus 360 l~~~l~~---~~~~~~lh~~~~--~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~--~~------- 425 (475)
+++.|.+ +.++..+|+++. .+++++++++|++|+.+|||+|+++++|+|+|+++.|+++|++.. ..
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er 521 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER 521 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH
Confidence 7777755 467899999986 467899999999999999999999999999999999987776532 11
Q ss_pred --HHH---hhccCCCCCCCcEEEeeC
Q 011908 426 --QFL---STQISRPGKSRVLSEMLD 446 (475)
Q Consensus 426 --~~~---~gR~gR~g~~~~~~~~~~ 446 (475)
..+ .||+||.+..|.+++...
T Consensus 522 ~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 522 TFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred HHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 112 677777777888886544
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-32 Score=250.16 Aligned_cols=316 Identities=16% Similarity=0.202 Sum_probs=231.5
Q ss_pred CcHHHHHHhhhhhcC-CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCC
Q 011908 122 LFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~ 200 (475)
-++.|.+++..+.++ +|+.+++|||+||++||.+|.|-. +...+++.|..+|..+..+-+..+- +
T Consensus 21 Ks~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiALIkDQiDHL~~LK--V 86 (641)
T KOG0352|consen 21 KSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIALIKDQIDHLKRLK--V 86 (641)
T ss_pred cChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHHHHHHHHHHHhcC--C
Confidence 379999999998765 689999999999999999998864 3478999999999999888888763 3
Q ss_pred ceEEEEcCCChhHHHHHh------hCCCCEEEEccHHHHHHHHh----CCCCCCCccEEEEeccccccccC--cHHHHHH
Q 011908 201 DTICVYGGTPISHQMRAL------DYGVDAVVGTPGRVIDLIKR----NALNLSEVQFVVLDEADQMLSVG--FAEDVEV 268 (475)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~------~~~~~Ilv~T~~~l~~~l~~----~~~~~~~l~~vIiDE~H~~~~~~--~~~~~~~ 268 (475)
.+..+.+.....+..+.+ .....+++-||++...-..+ ....-+-+.|+|+||+|++..|| |..++..
T Consensus 87 p~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~ 166 (641)
T KOG0352|consen 87 PCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLT 166 (641)
T ss_pred chhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhh
Confidence 333344444444443332 23478999999975432221 12223458899999999999887 5555443
Q ss_pred H--HHhCCCCCcEEEEeeecChhHHHHH--HHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhh-c-
Q 011908 269 I--LERLPQNRQSMMFSATMPPWIRSLT--NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH-A- 342 (475)
Q Consensus 269 i--l~~~~~~~~~l~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~- 342 (475)
+ |+..-++..-+.+|||..+.+.... ..-+..|..+--.+.....+.-.+. ......+....|.++.... .
T Consensus 167 LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~---~K~~I~D~~~~LaDF~~~~LG~ 243 (641)
T KOG0352|consen 167 LGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNH---MKSFITDCLTVLADFSSSNLGK 243 (641)
T ss_pred hhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHH---HHHHhhhHhHhHHHHHHHhcCC
Confidence 3 3333356778999999998876543 3334566655322221111110000 0111122233344433221 1
Q ss_pred ----------CCCcEEEEeCChHHHHHHHHHH-HccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC
Q 011908 343 ----------KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 343 ----------~~~~~lVf~~~~~~~~~l~~~l-~~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~ 411 (475)
..+-.||||.+++++|+++-.| .+++....+|.++...||.++.+.|.+|+..|++||..+.+|+|-|+
T Consensus 244 ~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~ 323 (641)
T KOG0352|consen 244 HEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPD 323 (641)
T ss_pred hhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcc
Confidence 1356899999999999999999 46899999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcC
Q 011908 412 VDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQG 454 (475)
Q Consensus 412 ~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~ 454 (475)
|++|||++.+.+...|. .||+||.|...+|-++++..|....+
T Consensus 324 VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 324 VRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALN 368 (641)
T ss_pred eeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHH
Confidence 99999999999999998 99999999999999999998886543
No 81
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=2.1e-30 Score=260.51 Aligned_cols=291 Identities=21% Similarity=0.269 Sum_probs=194.2
Q ss_pred EEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH--
Q 011908 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA-- 217 (475)
Q Consensus 140 li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-- 217 (475)
|+.|+||||||.+|+..+...+. .|.+++|++|+.+|+.|+++.|++.+ +..+..++++.+..++...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---------LGKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHH
Confidence 57899999999999777666552 37789999999999999999999987 4567788888776554332
Q ss_pred -h-hCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccC-----c-HHHHHHHHHhCCCCCcEEEEeeecChh
Q 011908 218 -L-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----F-AEDVEVILERLPQNRQSMMFSATMPPW 289 (475)
Q Consensus 218 -~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~-----~-~~~~~~il~~~~~~~~~l~~SAT~~~~ 289 (475)
. ...++|+|||+..+. ..+.++++|||||.|...-++ | ...+...... ..+.+++++||||..+
T Consensus 71 ~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsle 142 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHH
Confidence 2 234899999987653 347899999999999865332 1 1223333333 3678899999997764
Q ss_pred HHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccC---cchhhHHHHHHHhhcCCCcEEEEeCChHH----------
Q 011908 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM---YEKPSIIGQLITEHAKGGKCIVFTQTKRD---------- 356 (475)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~~~~~~~~~~~~lVf~~~~~~---------- 356 (475)
....... +....+.+...........+......... .--..++..+.+.+.+++++|||+|++..
T Consensus 143 s~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 4333321 11112222111111111111111111000 00123455555667778899999766432
Q ss_pred --------------------------------------------------HHHHHHHHHc---cCCeeeecCCCCHHHH-
Q 011908 357 --------------------------------------------------ADRLAHAMAK---SYNCEPLHGDISQSQR- 382 (475)
Q Consensus 357 --------------------------------------------------~~~l~~~l~~---~~~~~~lh~~~~~~~r- 382 (475)
.+++.+.|++ +.++..+|++++...+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 3677777765 4578899999987766
Q ss_pred -HHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCC---h--------hHHH---hhccCCCCCCCcEEE-eeC
Q 011908 383 -ERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERK---E--------VQFL---STQISRPGKSRVLSE-MLD 446 (475)
Q Consensus 383 -~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~---~--------~~~~---~gR~gR~g~~~~~~~-~~~ 446 (475)
+++++.|++|+.+|||+|+++++|+|+|+++.|+++|++.. + ...+ .||+||.++.|.+++ .+.
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 89999999999999999999999999999999987766531 1 1112 677777777887774 455
Q ss_pred hhhh
Q 011908 447 ADLL 450 (475)
Q Consensus 447 ~~~~ 450 (475)
+++.
T Consensus 381 p~~~ 384 (505)
T TIGR00595 381 PNHP 384 (505)
T ss_pred CCCH
Confidence 5553
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.98 E-value=2.8e-30 Score=275.88 Aligned_cols=302 Identities=20% Similarity=0.308 Sum_probs=201.1
Q ss_pred CcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH----HhHHHHHHHHHHhC
Q 011908 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR----ELAKQVEKEFHESA 197 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~----~La~Q~~~~l~~~~ 197 (475)
.+.+..++++.+..++.++++|+||||||.. +|.+..-. +.+....+++..|.+ +||.|+++++....
T Consensus 75 i~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 75 VSQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL------GRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred HHHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 3455667777777778899999999999983 44222111 111123455566854 67777777776532
Q ss_pred C-CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc-cccccCcHHH-HHHHHHhCC
Q 011908 198 P-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLP 274 (475)
Q Consensus 198 ~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H-~~~~~~~~~~-~~~il~~~~ 274 (475)
. .++..+ ... .....+++|+|+||++|+..+..... +++++++||||+| +.++.+|... ++.++.. .
T Consensus 147 G~~VGY~v-----rf~---~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-r 216 (1294)
T PRK11131 147 GGCVGYKV-----RFN---DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-R 216 (1294)
T ss_pred cceeceee-----cCc---cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-C
Confidence 1 111111 111 11234589999999999998876554 8999999999999 5777766543 3333333 3
Q ss_pred CCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcc---hhhHHHHHHH---h--hcCCCc
Q 011908 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE---KPSIIGQLIT---E--HAKGGK 346 (475)
Q Consensus 275 ~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~~~---~--~~~~~~ 346 (475)
++.|+++||||+++ ..+...+...| .+.+.+... .+..++......+ +.+.+..++. . ....++
T Consensus 217 pdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~~-----pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 217 PDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRTY-----PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred CCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCccc-----cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 56899999999975 34554444444 455544321 1233333322211 2233333322 1 124578
Q ss_pred EEEEeCChHHHHHHHHHHHc-cC---CeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCC--
Q 011908 347 CIVFTQTKRDADRLAHAMAK-SY---NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVL-- 420 (475)
Q Consensus 347 ~lVf~~~~~~~~~l~~~l~~-~~---~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~-- 420 (475)
+||||++.++++.+++.|.+ ++ .+..+||+|++++|.++++. .|..+|||||+++++|+|+|++++||+++.
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k 366 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTAR 366 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcc
Confidence 99999999999999999964 33 46789999999999999886 578899999999999999999999999863
Q ss_pred -------------CCChh---HHHhhccCCCCC--CCcEEEeeChhhhhh
Q 011908 421 -------------ERKEV---QFLSTQISRPGK--SRVLSEMLDADLLSS 452 (475)
Q Consensus 421 -------------~~~~~---~~~~gR~gR~g~--~~~~~~~~~~~~~~~ 452 (475)
|..+. ++ .||+||+|| .|.|+.++++++...
T Consensus 367 ~~~Yd~~~~~~~Lp~~~iSkasa-~QRaGRAGR~~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 367 ISRYSYRTKVQRLPIEPISQASA-NQRKGRCGRVSEGICIRLYSEDDFLS 415 (1294)
T ss_pred ccccccccCcccCCeeecCHhhH-hhhccccCCCCCcEEEEeCCHHHHHh
Confidence 32232 23 466666665 699999999988754
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=4.5e-30 Score=255.15 Aligned_cols=291 Identities=22% Similarity=0.291 Sum_probs=196.2
Q ss_pred CCCcHHHHHHhhhhhc----CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
.+|+++|.++++.+.+ ++..++++|||+|||++++..+... +..++|+||+++|+.||++.+..
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------------cCCEEEEECcHHHHHHHHHHHHH
Confidence 4799999999999998 7889999999999999886655443 33399999999999999988888
Q ss_pred hCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCC
Q 011908 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~ 275 (475)
.+.........|+...... . ..|.|+|.+.+........+..+.+++||+||+|++.+..+ +.+...+ .
T Consensus 103 ~~~~~~~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~~~~-~ 171 (442)
T COG1061 103 FLLLNDEIGIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRILELL-S 171 (442)
T ss_pred hcCCccccceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HHHHHhh-h
Confidence 7653222223333332211 0 36999999888664211233344799999999999866533 3333333 2
Q ss_pred CCc-EEEEeeecChhHHHHH---HHhcCCCcEEEeecC--CcccccCCeEEEEEec------------------------
Q 011908 276 NRQ-SMMFSATMPPWIRSLT---NKYLKNPLTVDLVGD--SDQKLADGISLYSIAT------------------------ 325 (475)
Q Consensus 276 ~~~-~l~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------------------------ 325 (475)
... ++++||||+....... ...+ .+......-. .............+..
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 333 9999999863221111 1111 1222221100 0000011111111111
Q ss_pred --------------cCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHccCCeeeecCCCCHHHHHHHHHHHhc
Q 011908 326 --------------SMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRD 391 (475)
Q Consensus 326 --------------~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~lh~~~~~~~r~~~~~~F~~ 391 (475)
....+...+..++..+..+.+++|||.+..+++.++..+...--+..+.|..+..+|..+++.|+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHc
Confidence 111122233334433335679999999999999999999643228899999999999999999999
Q ss_pred CCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCC
Q 011908 392 GRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISR 434 (475)
Q Consensus 392 g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR 434 (475)
|.+++||++.++.+|+|+|+++++|+..+..|...|+ .||.-|
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999988888887 555555
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=3.3e-29 Score=262.65 Aligned_cols=309 Identities=18% Similarity=0.196 Sum_probs=197.9
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH----
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---- 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~---- 195 (475)
.+|+++|..+.........+++.+|||+|||.+++.++...+.. +...+++|..||+++++|+++++.+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 47999999885443344568999999999999987776644322 2345799999999999999999875
Q ss_pred hCCCCceEEEEcCCChhHHH---------------------HHhh---C---CCCEEEEccHHHHHHHHhCC-CCCCC--
Q 011908 196 SAPSLDTICVYGGTPISHQM---------------------RALD---Y---GVDAVVGTPGRVIDLIKRNA-LNLSE-- 245 (475)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~---------------------~~~~---~---~~~Ilv~T~~~l~~~l~~~~-~~~~~-- 245 (475)
.++...+.+.+|........ .-+. + -.+|+|||.++++....... ..+..
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 44444566666654321100 0111 1 16999999999886544321 11222
Q ss_pred --ccEEEEeccccccccCcHHHHHHHHHhC-CCCCcEEEEeeecChhHHHHHHHhcCCCc---------EEEeecCCc-c
Q 011908 246 --VQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPL---------TVDLVGDSD-Q 312 (475)
Q Consensus 246 --l~~vIiDE~H~~~~~~~~~~~~~il~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~ 312 (475)
-++|||||+|.+-.. ....+..+++.+ .....+++||||+|+..+..+...+.... .+....... .
T Consensus 438 La~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 358999999986332 344445555443 23567999999999877654333221110 000000000 0
Q ss_pred cc---------cCCeEE--EEEecc-CcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHcc----CCeeeecCC
Q 011908 313 KL---------ADGISL--YSIATS-MYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS----YNCEPLHGD 376 (475)
Q Consensus 313 ~~---------~~~~~~--~~~~~~-~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~lh~~ 376 (475)
.. ...... ...... ......++..+++....+++++||||+++.++.+++.|.+. ..+..+||+
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 00 000000 001001 11224566667776677889999999999999999999753 479999999
Q ss_pred CCHHHHH----HHHHHH-hcCC---CcEEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccCCCCC
Q 011908 377 ISQSQRE----RTLSAF-RDGR---FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGK 437 (475)
Q Consensus 377 ~~~~~r~----~~~~~F-~~g~---~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g~ 437 (475)
++..+|. ++++.| ++|+ ..|||||+++|+|+|+ ++++||...+|.+..-|.+||+||.++
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCCHHHHHHHHhccCCCCC
Confidence 9999994 567788 6666 4799999999999999 689999988874322222555555543
No 85
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=3e-30 Score=234.48 Aligned_cols=332 Identities=17% Similarity=0.260 Sum_probs=247.4
Q ss_pred cCCCCCHHHHHHHHHC-CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe
Q 011908 102 SKLDISQDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (475)
Q Consensus 102 ~~~~l~~~l~~~l~~~-~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~ 180 (475)
++++++.+..+.|++. ...+++|.|..+|+..+.+.+.++..|||.||++||.+|++.. ...+|+++
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi~ 141 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVIC 141 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEeec
Confidence 3567778888888763 4567899999999999999999999999999999999998854 55689999
Q ss_pred CCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHH---HHHh-h--CCCCEEEEccHHHHHH---HHh--CCCCCCCccEE
Q 011908 181 PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ---MRAL-D--YGVDAVVGTPGRVIDL---IKR--NALNLSEVQFV 249 (475)
Q Consensus 181 Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~~-~--~~~~Ilv~T~~~l~~~---l~~--~~~~~~~l~~v 249 (475)
|...|.++..-.++.+ ++....+..+....+. ...+ . ....+++.||+++... +.+ ..+....+.++
T Consensus 142 plislmedqil~lkql--gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQL--GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred hhHHHHHHHHHHHHHh--CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 9999999988888887 4444444444432221 1111 1 2368999999998532 211 33456678999
Q ss_pred EEeccccccccC--cHHHHH--HHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEec
Q 011908 250 VLDEADQMLSVG--FAEDVE--VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325 (475)
Q Consensus 250 IiDE~H~~~~~~--~~~~~~--~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (475)
.+||+|+...|+ |...+. .++.+--++..++++|||.+..+...+...+.......+......+ .-.+.+..
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~----nl~yev~q 295 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRP----NLKYEVRQ 295 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCC----CceeEeee
Confidence 999999999886 544444 3344444677899999999887776665554433333221111111 11222333
Q ss_pred cCcchhhHHHH---HHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 011908 326 SMYEKPSIIGQ---LITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401 (475)
Q Consensus 326 ~~~~k~~~l~~---~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~ 401 (475)
......+.+.+ +++.-..|...||||-++.++|.++..|+. ++....+|..|.+++|.-+-+.|..|+++|+|+|-
T Consensus 296 kp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 296 KPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred CCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEe
Confidence 33333444444 444444577889999999999999999965 78999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEecCCCCChhHHH---------------------------------------------hhccCCCC
Q 011908 402 VAARGLDVPNVDLVELVVLERKEVQFL---------------------------------------------STQISRPG 436 (475)
Q Consensus 402 ~l~~GiDip~~~~vI~~~~~~~~~~~~---------------------------------------------~gR~gR~g 436 (475)
++..|||-|++++||+..+|.+...|. .||+||.+
T Consensus 376 afgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~ 455 (695)
T KOG0353|consen 376 AFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD 455 (695)
T ss_pred eecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC
Confidence 999999999999999999998876654 38899998
Q ss_pred CCCcEEEeeChhhhh
Q 011908 437 KSRVLSEMLDADLLS 451 (475)
Q Consensus 437 ~~~~~~~~~~~~~~~ 451 (475)
.+..|++++.-.|..
T Consensus 456 ~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 456 MKADCILYYGFADIF 470 (695)
T ss_pred CcccEEEEechHHHH
Confidence 899999999987764
No 86
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=1.7e-29 Score=227.55 Aligned_cols=200 Identities=44% Similarity=0.774 Sum_probs=177.7
Q ss_pred ccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe
Q 011908 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (475)
Q Consensus 101 ~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~ 180 (475)
|+++++++.+.+.+.+.++..|+++|.++++.+.+++++++.+|||+|||++|++++++.+.... ...+++++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEc
Confidence 56889999999999999999999999999999999999999999999999999999999886631 12477899999
Q ss_pred CCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 181 PTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 181 Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
|+++|+.|+.+.+..+.. ++.+..+.|+.........+..+++|+|+||+++...+.+....+.+++++|+||+|.+.
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 999999999999988764 567777888888776666666679999999999999988877888999999999999998
Q ss_pred ccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEE
Q 011908 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (475)
Q Consensus 259 ~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 304 (475)
+.+++..+..++..++..++++++|||+++....+...++.++..+
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8889999999999998899999999999999999888888877654
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=8.5e-30 Score=260.75 Aligned_cols=357 Identities=18% Similarity=0.247 Sum_probs=243.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC-CcEEEEccCCCChhHHhHHHHHHHHHhhhhccC--CCCCceEEEEeCC
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPT 182 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~--~~~~~~~lil~Pt 182 (475)
+|..-..+|. +...+.++|..+.+..+.+ .++++|||||+|||.++++.+++.+-.+....+ .-...++++++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4444444443 3445899999999988866 579999999999999999999999876543221 1234589999999
Q ss_pred HHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC--CCCCCccEEEEecccccc
Q 011908 183 RELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQML 258 (475)
Q Consensus 183 ~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~l~~vIiDE~H~~~ 258 (475)
++|++.|...|.+.+. ++.+.-++|......+. -.+..|+||||+++.-.-+... -..+-++++|+||.|.+-
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 9999999999998876 55666678776643332 1246999999999854433311 123357899999999654
Q ss_pred ccCcHHHHHHHHHhC-------CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccC--cc
Q 011908 259 SVGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM--YE 329 (475)
Q Consensus 259 ~~~~~~~~~~il~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 329 (475)
+. .|..++.+..+. ...++.+++|||+|+... .......++.-+-..+..-.+.+ +.+.++.... ..
T Consensus 451 Dd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~syRpvP--L~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 451 DD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSSYRPVP--LKQQYIGITEKKPL 526 (1674)
T ss_pred cc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcccCcCC--ccceEeccccCCch
Confidence 44 777776665433 346889999999998533 22222222222222222222222 2333333322 22
Q ss_pred hh------hHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-------------------------------------
Q 011908 330 KP------SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK------------------------------------- 366 (475)
Q Consensus 330 k~------~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~------------------------------------- 366 (475)
+. ..+..+++.. ..+|+|||+.+++++-+.|..++.
T Consensus 527 ~~~qamNe~~yeKVm~~a-gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEHA-GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 22 2344444444 458999999999998888777652
Q ss_pred -cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE----ecCCCCChhHHH-----hhccCCCC
Q 011908 367 -SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVE----LVVLERKEVQFL-----STQISRPG 436 (475)
Q Consensus 367 -~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI----~~~~~~~~~~~~-----~gR~gR~g 436 (475)
.+.++++|++|+..+|..+++.|.+|.++|||+|-.+++|+++|.-+++| .||+..+.-..+ .|+.||+|
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 13478899999999999999999999999999999999999999888776 366665433332 44444444
Q ss_pred C-----CCcEEEeeChhhhhhcCCCchhhhhhhhhhhccCC
Q 011908 437 K-----SRVLSEMLDADLLSSQGSPLKEVETCTMTWVAGLG 472 (475)
Q Consensus 437 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
| .|..++.....+...+....++.....++++..+.
T Consensus 686 rp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~ 726 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLA 726 (1674)
T ss_pred CCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhh
Confidence 4 36777777777776666666666666666666554
No 88
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.7e-28 Score=263.17 Aligned_cols=305 Identities=20% Similarity=0.272 Sum_probs=203.7
Q ss_pred cHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCce
Q 011908 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT 202 (475)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~ 202 (475)
..+..+++..+..++.++++|+||||||... |.+.. .. +.+....+++..|.+..|..++..+.+... ..+
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTql--Pq~ll--e~----~~~~~~~I~~tQPRRlAA~svA~RvA~elg-~~l 139 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQL--PKICL--EL----GRGSHGLIGHTQPRRLAARTVAQRIAEELG-TPL 139 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHHH--HHHHH--Hc----CCCCCceEecCCccHHHHHHHHHHHHHHhC-CCc
Confidence 3444667777777788999999999999843 32211 11 112233567778999988888877776552 333
Q ss_pred EEEEcC-CChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc-cccccCcHHH-HHHHHHhCCCCCcE
Q 011908 203 ICVYGG-TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNRQS 279 (475)
Q Consensus 203 ~~~~g~-~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H-~~~~~~~~~~-~~~il~~~~~~~~~ 279 (475)
....|. .....+ ......|.|+|++.|+..+.... .++++++|||||+| +.++.++... ++.++... ++.++
T Consensus 140 G~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKl 214 (1283)
T TIGR01967 140 GEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKI 214 (1283)
T ss_pred ceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeE
Confidence 223332 111111 13347899999999998887655 38899999999999 5777666654 45555443 57899
Q ss_pred EEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccC------cchhhHHHHHHHhh--cCCCcEEEEe
Q 011908 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM------YEKPSIIGQLITEH--AKGGKCIVFT 351 (475)
Q Consensus 280 l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~~~~~--~~~~~~lVf~ 351 (475)
++||||+.. ..+...+...| .+.+.+... + +...+..... .++...+...+... ...+.+|||+
T Consensus 215 IlmSATld~--~~fa~~F~~ap-vI~V~Gr~~---P--Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFL 286 (1283)
T TIGR01967 215 IITSATIDP--ERFSRHFNNAP-IIEVSGRTY---P--VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFL 286 (1283)
T ss_pred EEEeCCcCH--HHHHHHhcCCC-EEEECCCcc---c--ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 999999975 44554444333 455544321 1 2223322211 11222233333321 1357999999
Q ss_pred CChHHHHHHHHHHHc----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCC----
Q 011908 352 QTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERK---- 423 (475)
Q Consensus 352 ~~~~~~~~l~~~l~~----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~---- 423 (475)
|+.++++.+++.|.+ .+.+..+||+|++++|.+++..+ +..+|+|||+++++|+|||++++||+++.++.
T Consensus 287 pg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd 364 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYS 364 (1283)
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccc
Confidence 999999999999964 24588999999999999986653 34689999999999999999999999886541
Q ss_pred -----------h---hHHHhhccCCCCC--CCcEEEeeChhhhhh
Q 011908 424 -----------E---VQFLSTQISRPGK--SRVLSEMLDADLLSS 452 (475)
Q Consensus 424 -----------~---~~~~~gR~gR~g~--~~~~~~~~~~~~~~~ 452 (475)
+ .++ .||+||+|| .|.|+.+++.++...
T Consensus 365 ~~~~~~~L~~~~ISkasa-~QRaGRAGR~~~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 365 YRTKVQRLPIEPISQASA-NQRKGRCGRVAPGICIRLYSEEDFNS 408 (1283)
T ss_pred cccCccccCCccCCHHHH-HHHhhhhCCCCCceEEEecCHHHHHh
Confidence 1 223 455555554 799999999887754
No 89
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=6.5e-28 Score=254.41 Aligned_cols=317 Identities=15% Similarity=0.158 Sum_probs=205.9
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
.|.|||..+...+... ..+|+..++|.|||+.+.+.+...+.. +...++||+||. .|..||..++.+.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 5899999998887654 368999999999999886555544433 334579999997 89999999998776
Q ss_pred CCceEEEEcCCChhHHHH--HhhCCCCEEEEccHHHHHHH-HhCCCCCCCccEEEEeccccccccC--cHHHHHHHHHhC
Q 011908 199 SLDTICVYGGTPISHQMR--ALDYGVDAVVGTPGRVIDLI-KRNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERL 273 (475)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~--~~~~~~~Ilv~T~~~l~~~l-~~~~~~~~~l~~vIiDE~H~~~~~~--~~~~~~~il~~~ 273 (475)
++...++.++........ ......+++|+|.+.+...- ....+.-..++++|+||||++.... ....+..+....
T Consensus 223 ~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 223 NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 455444433221110000 01113689999988776411 1111223468899999999986321 112222222222
Q ss_pred CCCCcEEEEeeecChh-------------------HHHHH-------------H-----------------HhcCCCcE-
Q 011908 274 PQNRQSMMFSATMPPW-------------------IRSLT-------------N-----------------KYLKNPLT- 303 (475)
Q Consensus 274 ~~~~~~l~~SAT~~~~-------------------~~~~~-------------~-----------------~~~~~~~~- 303 (475)
....+++++||||... ...+. . .++.+...
T Consensus 303 ~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 303 EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIE 382 (956)
T ss_pred hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchh
Confidence 2346799999998420 00000 0 00000000
Q ss_pred -------------------------------EEeecCCc---ccccCCe-EEEEE-------------------------
Q 011908 304 -------------------------------VDLVGDSD---QKLADGI-SLYSI------------------------- 323 (475)
Q Consensus 304 -------------------------------~~~~~~~~---~~~~~~~-~~~~~------------------------- 323 (475)
-.+..... ...+... ..+..
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe 462 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPE 462 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHH
Confidence 00000000 0000000 00000
Q ss_pred -----------eccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH--ccCCeeeecCCCCHHHHHHHHHHHh
Q 011908 324 -----------ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA--KSYNCEPLHGDISQSQRERTLSAFR 390 (475)
Q Consensus 324 -----------~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~--~~~~~~~lh~~~~~~~r~~~~~~F~ 390 (475)
......|...+..+++.. .+.++||||++++.+..+.+.|. .++.+..+||+|+..+|.++++.|+
T Consensus 463 ~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 463 QIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 011123445566666655 36799999999999999999994 3689999999999999999999999
Q ss_pred cC--CCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeCh
Q 011908 391 DG--RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDA 447 (475)
Q Consensus 391 ~g--~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~ 447 (475)
++ ..+|||||++.++|+|++.+++||+||.|+++..|. +||+||.|+.+.+.+++..
T Consensus 542 ~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 542 DEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred cCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 84 599999999999999999999999999999999998 8999999988876555543
No 90
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.8e-27 Score=214.13 Aligned_cols=299 Identities=19% Similarity=0.225 Sum_probs=204.0
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
+|++.|+.+-+.+. +.++.++.|.||+|||....-.+-..+ ..|..+.+..|....+-+.+.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al---------~~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL---------NQGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH---------hcCCeEEEecCcccchHHHHHHHHHh
Confidence 68999998876654 457899999999999986655555555 34888999999999999999999999
Q ss_pred CCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCC
Q 011908 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~ 276 (475)
|.+..+.+++|+.....+ .+++|+|..+|+.+-+ .++++||||+|.+.-..-..-...+-.....+
T Consensus 168 F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 168 FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 999999999998774332 5899999888877643 46789999999864221111122222333455
Q ss_pred CcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchh------hHHHHHHH-hhcCCCcEEE
Q 011908 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP------SIIGQLIT-EHAKGGKCIV 349 (475)
Q Consensus 277 ~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~l~~~~~-~~~~~~~~lV 349 (475)
.-.+.+|||++..+....... +...+.+........ -.++.+....+...+. ..+..+++ +...+.+++|
T Consensus 234 g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~p-LpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 234 GATIYLTATPTKKLERKILKG--NLRILKLPARFHGKP-LPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred CceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCC-CCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 669999999987655443322 122222222222111 1122222222222221 13444444 4556889999
Q ss_pred EeCChHHHHHHHHHHHcc---CCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCCh-h
Q 011908 350 FTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKE-V 425 (475)
Q Consensus 350 f~~~~~~~~~l~~~l~~~---~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~-~ 425 (475)
|.|+++..+.++..|+.. ..++.+|+. ...|.+..+.|++|+..+||+|+++|+|+.+|++++.|+-...+.. .
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccH
Confidence 999999999999999664 356778887 4578888999999999999999999999999999988765444222 2
Q ss_pred HHHhhccCCCCC-----CCcEEEeeCh
Q 011908 426 QFLSTQISRPGK-----SRVLSEMLDA 447 (475)
Q Consensus 426 ~~~~gR~gR~g~-----~~~~~~~~~~ 447 (475)
+-++|-+||+|| .|..++|..-
T Consensus 389 saLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 389 SALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred HHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 222444445444 3555555543
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.4e-27 Score=242.58 Aligned_cols=312 Identities=18% Similarity=0.186 Sum_probs=209.8
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-- 198 (475)
.+++.| .+..+.-.+..+.+++||+|||++|.+|++...+. |..+.|++||+.||.|.++.+..++.
T Consensus 82 ~~ydvQ--liGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 82 RHFDVQ--LIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred CcchHH--HhhhhhhccCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 455666 44444444467999999999999999999977754 56699999999999999999999876
Q ss_pred CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhC-CCCC-----CCccEEEEecccccccc-----------
Q 011908 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQMLSV----------- 260 (475)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~-~~~~-----~~l~~vIiDE~H~~~~~----------- 260 (475)
++.+.+++||.+...+...+ .++|+||||++| .+++... .+.+ ..+.++|+||+|.++-.
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 67888899998877665554 489999999999 8888765 2333 57999999999986521
Q ss_pred -----CcHHHHHHHHHhCCC--------------CC--------------------------------------------
Q 011908 261 -----GFAEDVEVILERLPQ--------------NR-------------------------------------------- 277 (475)
Q Consensus 261 -----~~~~~~~~il~~~~~--------------~~-------------------------------------------- 277 (475)
........+...+.. ..
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 011111112221111 01
Q ss_pred ------------------------------------------------------------------------cEEEEeee
Q 011908 278 ------------------------------------------------------------------------QSMMFSAT 285 (475)
Q Consensus 278 ------------------------------------------------------------------------~~l~~SAT 285 (475)
++-+||+|
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence 22333333
Q ss_pred cChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhh-HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHH
Q 011908 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364 (475)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l 364 (475)
.......+...|- ..++.+.... .......+ ..+..+..+|.. ++..+.+.+..+.++||||+|++.++.++..|
T Consensus 389 a~te~~Ef~~iY~--l~Vv~IPtnk-p~~R~d~~-d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L 464 (896)
T PRK13104 389 ADTEAYEFQQIYN--LEVVVIPTNR-SMIRKDEA-DLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLL 464 (896)
T ss_pred ChhHHHHHHHHhC--CCEEECCCCC-CcceecCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 3222222222221 1111111100 00000001 112223333443 44445556678999999999999999999999
Q ss_pred H-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC-------------------------------
Q 011908 365 A-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV------------------------------- 412 (475)
Q Consensus 365 ~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~------------------------------- 412 (475)
. .+++...+|+++.+.++..+.+.|+.|. |+|||+++++|+||.=-
T Consensus 465 ~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (896)
T PRK13104 465 KKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHD 542 (896)
T ss_pred HHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhh
Confidence 5 4799999999999999999999999995 99999999999998511
Q ss_pred -------CEEEecCCCCC--hhHHHhhccCCCCCCCcEEEeeChhhhh
Q 011908 413 -------DLVELVVLERK--EVQFLSTQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 413 -------~~vI~~~~~~~--~~~~~~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
-+||--..+.| ...|+.||+||-|.+|.+-+|++-+|.-
T Consensus 543 ~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 543 EVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred HHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 24444333333 3455599999999999999999876653
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=239.54 Aligned_cols=311 Identities=19% Similarity=0.208 Sum_probs=224.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
-.++|-..|++|+-.+..|.++++.|+|.+|||++|-.++.-+.. .+.++++..|-++|.+|-++.|++-|
T Consensus 294 ~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---------h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---------HMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---------hccceEecchhhhhccchHHHHHHhc
Confidence 446899999999999999999999999999999999887765542 26779999999999999999999998
Q ss_pred CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCC
Q 011908 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (475)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~ 277 (475)
.+.+ +++|+... ...+.++|.|.+.|.+.+-+..--+.++..||+||+|.+.+...|..+++++-.+|.+.
T Consensus 365 ~Dvg--LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 365 GDVG--LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred cccc--eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 8665 77887653 33478999999999998888776688999999999999999999999999999999999
Q ss_pred cEEEEeeecChhHHHHHHHhcC-CCcEEEeecCCcccccCCeEEE--------------------------------EEe
Q 011908 278 QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLY--------------------------------SIA 324 (475)
Q Consensus 278 ~~l~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~ 324 (475)
++|++|||+|+. ..++.+... ....+.+++....+++-....+ ...
T Consensus 436 ~~IlLSATVPN~-~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~ 514 (1248)
T KOG0947|consen 436 NFILLSATVPNT-LEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD 514 (1248)
T ss_pred eEEEEeccCCCh-HHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccc
Confidence 999999998864 233332210 0000000000000000000000 000
Q ss_pred -----------------------------ccC--cchhhHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHc-----
Q 011908 325 -----------------------------TSM--YEKPSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHAMAK----- 366 (475)
Q Consensus 325 -----------------------------~~~--~~k~~~l~~~~~~~~--~~~~~lVf~~~~~~~~~l~~~l~~----- 366 (475)
... ..+...+..++..+. +--+++|||-++..|++.++.|..
T Consensus 515 ~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~ 594 (1248)
T KOG0947|consen 515 VEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTD 594 (1248)
T ss_pred cccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCccc
Confidence 000 011123444444332 245899999999999998888853
Q ss_pred -----------------------------------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC
Q 011908 367 -----------------------------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 367 -----------------------------------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~ 411 (475)
...++++||++-+--++-++.-|..|-++||+||..++.|||.|.
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA 674 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA 674 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc
Confidence 112778999999999999999999999999999999999999998
Q ss_pred CCEEEecCCCC--------ChhHHH--hhccCCCCC--CCcEEEeeCh
Q 011908 412 VDLVELVVLER--------KEVQFL--STQISRPGK--SRVLSEMLDA 447 (475)
Q Consensus 412 ~~~vI~~~~~~--------~~~~~~--~gR~gR~g~--~~~~~~~~~~ 447 (475)
-++|+.--.-. .+-.|. .||+||.|- .|.++++...
T Consensus 675 RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 675 RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 77775421111 123333 777777773 4666665543
No 93
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=4.5e-28 Score=237.10 Aligned_cols=306 Identities=21% Similarity=0.249 Sum_probs=228.3
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
-+++|-|.|..+|..+.++.++++.|.|.+|||++|-.++...+.+ ..++++..|-++|.+|-|+++..-|
T Consensus 126 YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred CCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHh
Confidence 3468999999999999999999999999999999999999988844 6789999999999999999999988
Q ss_pred CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCC
Q 011908 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (475)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~ 277 (475)
.+ +.+.+|+.+. ...+..+|.|.+.|...+-++..-+..+..||+||+|.|.+...|..|++.+-.+|++.
T Consensus 197 ~D--VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 197 KD--VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred cc--cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 75 4556776653 33478999999999998888777789999999999999999999999999888999999
Q ss_pred cEEEEeeecChhHHHHHHH---hcCCCcEEEeecCCcccccCCeEEEE---------EeccCc-----------------
Q 011908 278 QSMMFSATMPPWIRSLTNK---YLKNPLTVDLVGDSDQKLADGISLYS---------IATSMY----------------- 328 (475)
Q Consensus 278 ~~l~~SAT~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~----------------- 328 (475)
+.+++|||+|+. ..++.+ .-..|..+....... ..++++. ...+..
T Consensus 268 r~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyRP----TPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~ 342 (1041)
T KOG0948|consen 268 RFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYRP----TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRK 342 (1041)
T ss_pred eEEEEeccCCCH-HHHHHHHHHHhcCCceEEeecCCC----CcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhc
Confidence 999999998864 333332 222333332211110 0011110 000000
Q ss_pred ---------------------------chhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc---------------
Q 011908 329 ---------------------------EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--------------- 366 (475)
Q Consensus 329 ---------------------------~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~--------------- 366 (475)
+-..++.-++.+ +..++|||+-++++||..+-.+.+
T Consensus 343 ~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~--~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~i 420 (1041)
T KOG0948|consen 343 AGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER--NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETI 420 (1041)
T ss_pred cCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhh--cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHH
Confidence 001122222222 356999999999999988877743
Q ss_pred -------------------------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCC
Q 011908 367 -------------------------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLE 421 (475)
Q Consensus 367 -------------------------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~ 421 (475)
...++++|+++-+--++-++-.|.+|-+++|+||..++.|+|.|.-++|+-----
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rK 500 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRK 500 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccc
Confidence 1137889999999999999999999999999999999999999977766532111
Q ss_pred CC--------hhHHH--hhccCCCCC--CCcEEEeeChh
Q 011908 422 RK--------EVQFL--STQISRPGK--SRVLSEMLDAD 448 (475)
Q Consensus 422 ~~--------~~~~~--~gR~gR~g~--~~~~~~~~~~~ 448 (475)
.+ .-.|+ .||+||.|- .|.|++.++..
T Consensus 501 fDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 501 FDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 12 22344 777777775 47888888753
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.5e-26 Score=237.76 Aligned_cols=313 Identities=19% Similarity=0.151 Sum_probs=221.3
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|. .|++.|.-..-.+.. ..+.++.||+|||+++.+|++-..+. |.++-|++||..||.|.++.+..++
T Consensus 79 g~-~~~dvQlig~l~L~~--G~Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHE--GKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred CC-CCCccHHHhhHHhcC--CchhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 44 577777655544444 46999999999999999999644433 5568899999999999999999988
Q ss_pred C--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhCC------CCCCCccEEEEecccccccc--------
Q 011908 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV-------- 260 (475)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~l~~vIiDE~H~~~~~-------- 260 (475)
. ++.+.+++|+.+...+...+ .++|++|||..| .++++... .....+.++|+||+|.++-.
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 6 78889999998887776665 389999999999 78886543 23577899999999986411
Q ss_pred --------CcHHHHHHHHHhCCC---------------------------------------------------------
Q 011908 261 --------GFAEDVEVILERLPQ--------------------------------------------------------- 275 (475)
Q Consensus 261 --------~~~~~~~~il~~~~~--------------------------------------------------------- 275 (475)
.....+..+...+..
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 011111122221100
Q ss_pred ------------------------------------------------------------CCcEEEEeeecChhHHHHHH
Q 011908 276 ------------------------------------------------------------NRQSMMFSATMPPWIRSLTN 295 (475)
Q Consensus 276 ------------------------------------------------------------~~~~l~~SAT~~~~~~~~~~ 295 (475)
...+.+||+|.......+..
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 384 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFRE 384 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHH
Confidence 02566777777554444433
Q ss_pred HhcCCCcEEEeecCCcccccCCeE-EEEEeccCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHH-ccCCeee
Q 011908 296 KYLKNPLTVDLVGDSDQKLADGIS-LYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEP 372 (475)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~ 372 (475)
.|. ..++.+..... ..... ...+..+..+|...+...+.+ +..+.++||||+|++.++.++..|. .++++..
T Consensus 385 iY~--l~vv~IPtnkp---~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~v 459 (830)
T PRK12904 385 IYN--LDVVVIPTNRP---MIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNV 459 (830)
T ss_pred HhC--CCEEEcCCCCC---eeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEe
Confidence 332 22332222111 11111 112333445566666666644 5678899999999999999999995 4699999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC--------------------------------------CE
Q 011908 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV--------------------------------------DL 414 (475)
Q Consensus 373 lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~--------------------------------------~~ 414 (475)
+|++ +.+|+..+..|..+...|+|||++++||+||+-- -+
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 9996 7899999999999999999999999999999632 24
Q ss_pred EEecCCCCC--hhHHHhhccCCCCCCCcEEEeeChhhhh
Q 011908 415 VELVVLERK--EVQFLSTQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 415 vI~~~~~~~--~~~~~~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
||.-..+.| ...|+.||+||-|.+|.+-++++-+|.-
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 555444444 3455599999999999999999876653
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.4e-26 Score=236.91 Aligned_cols=314 Identities=18% Similarity=0.174 Sum_probs=219.3
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|. .|++.|.-..=.+.. ..+.++.||+|||+++.++++...+. |.++.+|+||..||.|.++.+..++
T Consensus 78 g~-~~~dvQlig~l~l~~--G~iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 78 GL-RPFDVQIIGGIVLHE--GNIAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CC-CCchhHHHHHHHHhc--CCcccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 44 677888665544444 45999999999999999999888755 8899999999999999999999887
Q ss_pred C--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHH-HHHHhC------CCCCCCccEEEEecccccccc--------
Q 011908 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRN------ALNLSEVQFVVLDEADQMLSV-------- 260 (475)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~l~~~------~~~~~~l~~vIiDE~H~~~~~-------- 260 (475)
. ++.+.+++++.+...+...+ .++|++||...+. ++|+.. ......+.++||||+|.++-.
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLii 223 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLII 223 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceec
Confidence 6 67888888887766665554 4799999998774 344322 112356789999999986411
Q ss_pred --------CcHHHHHHHHHhCCC---------------------------------------------------------
Q 011908 261 --------GFAEDVEVILERLPQ--------------------------------------------------------- 275 (475)
Q Consensus 261 --------~~~~~~~~il~~~~~--------------------------------------------------------- 275 (475)
.....+..+...+..
T Consensus 224 sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~ 303 (796)
T PRK12906 224 SGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQ 303 (796)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHH
Confidence 011111111111000
Q ss_pred -----------------------------------------------------------------------CCcEEEEee
Q 011908 276 -----------------------------------------------------------------------NRQSMMFSA 284 (475)
Q Consensus 276 -----------------------------------------------------------------------~~~~l~~SA 284 (475)
..++.+||+
T Consensus 304 Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTG 383 (796)
T PRK12906 304 ALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTG 383 (796)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCC
Confidence 014556666
Q ss_pred ecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHH-HhhcCCCcEEEEeCChHHHHHHHHH
Q 011908 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAHA 363 (475)
Q Consensus 285 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~-~~~~~~~~~lVf~~~~~~~~~l~~~ 363 (475)
|.......+...| +...+.+.... .......+ ..+..+..+|...+...+ +.+..+.++||||++++.++.++..
T Consensus 384 Ta~~e~~Ef~~iY--~l~vv~IPtnk-p~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 384 TAKTEEEEFREIY--NMEVITIPTNR-PVIRKDSP-DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CCHHHHHHHHHHh--CCCEEEcCCCC-CeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 6544333333222 22222222111 11111111 112233344555555554 4456789999999999999999999
Q ss_pred HH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC---CCC-----EEEecCCCCChhHHH--hhcc
Q 011908 364 MA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP---NVD-----LVELVVLERKEVQFL--STQI 432 (475)
Q Consensus 364 l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip---~~~-----~vI~~~~~~~~~~~~--~gR~ 432 (475)
|. .++++..+|+++...++..+...++.|. |+|||++++||.||+ ++. +||+++.|.+...+. .||+
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 95 4699999999998777777777777776 999999999999994 899 999999999998887 9999
Q ss_pred CCCCCCCcEEEeeChhhhh
Q 011908 433 SRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 433 gR~g~~~~~~~~~~~~~~~ 451 (475)
||.|.+|.+.++++.+|.-
T Consensus 538 GRqG~~G~s~~~~sleD~l 556 (796)
T PRK12906 538 GRQGDPGSSRFYLSLEDDL 556 (796)
T ss_pred ccCCCCcceEEEEeccchH
Confidence 9999999999999987653
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=6e-26 Score=244.85 Aligned_cols=318 Identities=18% Similarity=0.295 Sum_probs=198.4
Q ss_pred CCCcHHHHHHhhhhhc----C-CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEPAMQ----G-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
..++++|.+|+..+.. + +..+++++||||||++++. ++..+.+. ....++||+||+.+|+.|+.+.|.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA------KRFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc------CccCeEEEEecHHHHHHHHHHHHH
Confidence 4689999999987752 3 5689999999999998644 33444331 224679999999999999999999
Q ss_pred HhCCCCc--eEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC-----CCCCCCccEEEEecccccccc-------
Q 011908 195 ESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSV------- 260 (475)
Q Consensus 195 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-----~~~~~~l~~vIiDE~H~~~~~------- 260 (475)
....... ....++...... ........|+|+|.+++...+... ...+..+++||+||||+-...
T Consensus 485 ~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 485 DTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred hcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 8743211 111111111011 112234799999999987765321 134678899999999994210
Q ss_pred --------CcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHH--------------hcCC---CcEEEee-cC-----
Q 011908 261 --------GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK--------------YLKN---PLTVDLV-GD----- 309 (475)
Q Consensus 261 --------~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~--------------~~~~---~~~~~~~-~~----- 309 (475)
.+...++.++..+ +...|+|||||...+..+... ++.+ |..+... ..
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 1245677777765 356899999987543322211 1110 1111100 00
Q ss_pred -Ccc--cccC----CeEEEEEecc------Ccch-------h-hHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHc
Q 011908 310 -SDQ--KLAD----GISLYSIATS------MYEK-------P-SIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAK 366 (475)
Q Consensus 310 -~~~--~~~~----~~~~~~~~~~------~~~k-------~-~~l~~~~~~~--~~~~~~lVf~~~~~~~~~l~~~l~~ 366 (475)
... .... .+........ ...+ . .++..+++.. ..++++||||.++++|+.+.+.|.+
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 000 0000 0000000000 0000 0 0112222222 1247999999999999999888753
Q ss_pred c----------CCeeeecCCCCHHHHHHHHHHHhcCCC-cEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccC
Q 011908 367 S----------YNCEPLHGDISQSQRERTLSAFRDGRF-NILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQIS 433 (475)
Q Consensus 367 ~----------~~~~~lh~~~~~~~r~~~~~~F~~g~~-~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~g 433 (475)
. ..+..+||+++ ++.+++++|+++.. +|+|+++++.+|+|+|.+.+||++++++|...|+ +||+.
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 2 13556888875 56789999999887 6999999999999999999999999999999887 66666
Q ss_pred CCCC--CCcEEEeeChhhh
Q 011908 434 RPGK--SRVLSEMLDADLL 450 (475)
Q Consensus 434 R~g~--~~~~~~~~~~~~~ 450 (475)
|... +...+.+++.-+.
T Consensus 799 R~~~~~~K~~f~I~D~vg~ 817 (1123)
T PRK11448 799 RLCPEIGKTHFRIFDAVDI 817 (1123)
T ss_pred cCCccCCCceEEEEehHHH
Confidence 6544 3566667765444
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.2e-25 Score=233.67 Aligned_cols=309 Identities=17% Similarity=0.227 Sum_probs=221.7
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
.++|-++|++++..+..+.++++++|||||||+++..++...+.. +.++++.+|.++|.+|.+++|...+.
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHHHHHhh
Confidence 358999999999999999999999999999999999999888844 66699999999999999999999886
Q ss_pred CC--ceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCC
Q 011908 199 SL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 199 ~~--~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~ 276 (475)
+. -+.+++|+... +.++.++|.|.+.|.+.+.+....+..+..||+||+|.+.+...|..++.++-.+|..
T Consensus 188 dv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 188 DVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 43 24566776653 3458999999999999998887778999999999999999999999999999999999
Q ss_pred CcEEEEeeecChhH--HHHHHHhcCCCcEEEeecCCcccccCCe------EEEEEeccCc--------------------
Q 011908 277 RQSMMFSATMPPWI--RSLTNKYLKNPLTVDLVGDSDQKLADGI------SLYSIATSMY-------------------- 328 (475)
Q Consensus 277 ~~~l~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-------------------- 328 (475)
.++++||||+++.. ..+....-..+..+.. .+ ..+.+-.. ..+.+.....
T Consensus 261 v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~-t~-~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 261 VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS-TE-HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe-ec-CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 99999999987632 2222221112222211 11 11100000 0000000000
Q ss_pred ---------------------------chhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc---------------
Q 011908 329 ---------------------------EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--------------- 366 (475)
Q Consensus 329 ---------------------------~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~--------------- 366 (475)
....++..+.. .+.-++|+||-++..|+..+..+..
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ 416 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIRE 416 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHH
Confidence 00111222211 2356899999999999876665531
Q ss_pred --------------cC-------------CeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe--
Q 011908 367 --------------SY-------------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL-- 417 (475)
Q Consensus 367 --------------~~-------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~-- 417 (475)
+. .++++|++|-+..|..+.+.|..|-.+|+++|.+++.|+|.|.-++|+-
T Consensus 417 ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l 496 (1041)
T COG4581 417 IIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSL 496 (1041)
T ss_pred HHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeee
Confidence 11 1457899999999999999999999999999999999999998777652
Q ss_pred --cCCC----CChhHHH--hhccCCCCCC--CcEEEeeCh
Q 011908 418 --VVLE----RKEVQFL--STQISRPGKS--RVLSEMLDA 447 (475)
Q Consensus 418 --~~~~----~~~~~~~--~gR~gR~g~~--~~~~~~~~~ 447 (475)
++-. -++..|. .||+||.|-. |.+++...+
T Consensus 497 ~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 497 SKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 2211 1233333 7888888854 566665443
No 98
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=6.1e-26 Score=198.16 Aligned_cols=163 Identities=32% Similarity=0.563 Sum_probs=138.4
Q ss_pred cHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--CC
Q 011908 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SL 200 (475)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~--~~ 200 (475)
|++|.++++.+.+++++++.||||+|||+++++++++.+.+ ....++++++|+++|+.|+++++.+++. ++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~-------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE-------GKDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc-------CCCceEEEEeeccccccccccccccccccccc
Confidence 78999999999999999999999999999999999988866 2234899999999999999999999886 46
Q ss_pred ceEEEEcCCChh-HHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCC--CCC
Q 011908 201 DTICVYGGTPIS-HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNR 277 (475)
Q Consensus 201 ~~~~~~g~~~~~-~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~--~~~ 277 (475)
++..++++.... .....+..+++|+|+||+++.+.+......+.+++++|+||+|.+..+.+...+..++..+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 778888887755 34444556699999999999999988655777899999999999998878888888888873 358
Q ss_pred cEEEEeeecChhHHH
Q 011908 278 QSMMFSATMPPWIRS 292 (475)
Q Consensus 278 ~~l~~SAT~~~~~~~ 292 (475)
++++||||+++.+++
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999865543
No 99
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.1e-24 Score=223.65 Aligned_cols=146 Identities=21% Similarity=0.331 Sum_probs=123.8
Q ss_pred cCCCCCHHHHHHHH-----HCCCCCC---cHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCC
Q 011908 102 SKLDISQDIVAALA-----RRGISKL---FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 102 ~~~~l~~~l~~~l~-----~~~~~~l---~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 173 (475)
+.+.+.+++.+.+. ..|+..| +|+|.++++.+..+++++.+++||+|||++|++|++..++. +
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------G 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------c
Confidence 35677888877776 4677766 99999999999999999999999999999999999987754 3
Q ss_pred ceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhCCCCCC------
Q 011908 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNALNLS------ 244 (475)
Q Consensus 174 ~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~~~~~------ 244 (475)
..++|++||++||.|.++.+..++. ++++.+++||.+...+...+ +++|+||||++| .++++...+.++
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vq 213 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVG 213 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhc
Confidence 3489999999999999999988765 67788899999988776655 489999999999 999987755554
Q ss_pred -CccEEEEecccccc
Q 011908 245 -EVQFVVLDEADQML 258 (475)
Q Consensus 245 -~l~~vIiDE~H~~~ 258 (475)
.+.++|+||+|.++
T Consensus 214 r~~~~~IIDEADsmL 228 (970)
T PRK12899 214 RGFYFAIIDEVDSIL 228 (970)
T ss_pred ccccEEEEechhhhh
Confidence 45899999999975
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=2e-25 Score=225.31 Aligned_cols=333 Identities=21% Similarity=0.259 Sum_probs=227.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHh--hhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVL--EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i--~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
++..........|...++.||.+++ +.++.++|.+...||+.|||+++-+-++..++-. +..++++.|..
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~v 279 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPYV 279 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEeccee
Confidence 3333334445578889999999997 4677889999999999999999999998887652 45589999999
Q ss_pred HhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh--CCCCCCCccEEEEeccccccc
Q 011908 184 ELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 184 ~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~--~~~~~~~l~~vIiDE~H~~~~ 259 (475)
..+......+..+.. |+.+...+|..+.... .+..++.|+|.++-..++.. +.-.+..+++||+||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 988888877777664 5556665555443322 22358999999987655433 122366799999999999999
Q ss_pred cCcHHHHHHHHHhC-----CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEee-cCC-cccccCCeEEEEE---------
Q 011908 260 VGFAEDVEVILERL-----PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV-GDS-DQKLADGISLYSI--------- 323 (475)
Q Consensus 260 ~~~~~~~~~il~~~-----~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~--------- 323 (475)
.+.+..++.++.++ ....|+++||||+++ ...+..++.......-. +-. ...+......+..
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N--~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~i 433 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPN--NSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREI 433 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCC--hHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHh
Confidence 99999888887765 344679999999986 33344443322221100 000 0000000000000
Q ss_pred -----eccCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHHc-------------------------------
Q 011908 324 -----ATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK------------------------------- 366 (475)
Q Consensus 324 -----~~~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~------------------------------- 366 (475)
........+.+..++.+ ..++.++||||+++..||.++..+..
T Consensus 434 a~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~l 513 (1008)
T KOG0950|consen 434 ANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGIL 513 (1008)
T ss_pred hhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCccc
Confidence 00000111223333333 33456799999999999988766533
Q ss_pred --------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHH------H--hh
Q 011908 367 --------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQF------L--ST 430 (475)
Q Consensus 367 --------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~------~--~g 430 (475)
...+..+|++++.++|+.+...|++|...|++||+.+..|++.|..+++| .+|..+..+ . .|
T Consensus 514 d~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIi--raP~~g~~~l~~~~YkQM~G 591 (1008)
T KOG0950|consen 514 DPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVII--RAPYVGREFLTRLEYKQMVG 591 (1008)
T ss_pred chHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEE--eCCccccchhhhhhHHhhhh
Confidence 12377899999999999999999999999999999999999999888664 455544443 3 67
Q ss_pred ccCCCCC--CCcEEEeeChhhhhhcC
Q 011908 431 QISRPGK--SRVLSEMLDADLLSSQG 454 (475)
Q Consensus 431 R~gR~g~--~~~~~~~~~~~~~~~~~ 454 (475)
|+||+|- .|.+++++.+.+.....
T Consensus 592 RAGR~gidT~GdsiLI~k~~e~~~~~ 617 (1008)
T KOG0950|consen 592 RAGRTGIDTLGDSILIIKSSEKKRVR 617 (1008)
T ss_pred hhhhcccccCcceEEEeeccchhHHH
Confidence 7777764 47899999988875443
No 101
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=3.7e-24 Score=221.38 Aligned_cols=306 Identities=19% Similarity=0.268 Sum_probs=217.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCC-
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~- 199 (475)
.-+....+.+..+.+++-++|.|+||||||...-..+++... ..+..+.+.-|.|.-|..+++++.+.+..
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 456777888888888889999999999999866555555432 33557888889999999988888776532
Q ss_pred Cc----eEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc-ccCcHH-HHHHHHHhC
Q 011908 200 LD----TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFAE-DVEVILERL 273 (475)
Q Consensus 200 ~~----~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~-~~~~~~-~~~~il~~~ 273 (475)
.+ ..+-..+. ......|-+.|.+.|+..+..+.. ++.+++||+||+|+=. +.++.- .++.++...
T Consensus 122 ~G~~VGY~iRfe~~--------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r 192 (845)
T COG1643 122 LGETVGYSIRFESK--------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARR 192 (845)
T ss_pred cCceeeEEEEeecc--------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc
Confidence 11 11111111 122368999999999999887665 8999999999999622 222222 233445556
Q ss_pred CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccC-cc-hhhHHHHHHHhh--cCCCcEEE
Q 011908 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM-YE-KPSIIGQLITEH--AKGGKCIV 349 (475)
Q Consensus 274 ~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-k~~~l~~~~~~~--~~~~~~lV 349 (475)
+++.++|.||||+.. .....++++...+.+.|.... ++.++..... .+ -...+...+..+ ...+.++|
T Consensus 193 r~DLKiIimSATld~---~rfs~~f~~apvi~i~GR~fP-----Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILv 264 (845)
T COG1643 193 RDDLKLIIMSATLDA---ERFSAYFGNAPVIEIEGRTYP-----VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILV 264 (845)
T ss_pred CCCceEEEEecccCH---HHHHHHcCCCCEEEecCCccc-----eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEE
Confidence 667899999999876 334456666666666443321 2333322222 22 233333333332 23678999
Q ss_pred EeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCC-
Q 011908 350 FTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERK- 423 (475)
Q Consensus 350 f~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~- 423 (475)
|.+..++.+.+++.|.+ ...+.++||.++.+++.++++.-..|+.+|++||+++|.++.||++..||+-+..+.
T Consensus 265 FLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~ 344 (845)
T COG1643 265 FLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEK 344 (845)
T ss_pred ECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccc
Confidence 99999999999999964 467889999999999999988878887789999999999999999999998554322
Q ss_pred ------hh--------HHH--hhccCCCCC--CCcEEEeeChhhhh
Q 011908 424 ------EV--------QFL--STQISRPGK--SRVLSEMLDADLLS 451 (475)
Q Consensus 424 ------~~--------~~~--~gR~gR~g~--~~~~~~~~~~~~~~ 451 (475)
+. ++- .||+||+|| +|.|+-+++.++..
T Consensus 345 ~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 345 RYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred ccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 11 121 799999998 58999999997765
No 102
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.93 E-value=4.6e-24 Score=208.70 Aligned_cols=316 Identities=14% Similarity=0.221 Sum_probs=216.3
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-- 198 (475)
..+.+-.+.+..+.+++-+++.|+||||||...-..+..+-. .....+.+..|.|..|..++++..+-..
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~--------~~~g~I~~TQPRRVAavslA~RVAeE~~~~ 122 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGF--------ASSGKIACTQPRRVAAVSLAKRVAEEMGCQ 122 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccc--------ccCCcEEeecCchHHHHHHHHHHHHHhCCC
Confidence 456777888999999999999999999999754333333221 2233489999999888888877665432
Q ss_pred ---CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC--
Q 011908 199 ---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-- 273 (475)
Q Consensus 199 ---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-- 273 (475)
.+....-+.+... ....|.+.|.+.|+..+..+.. ++.+++||+||||.-.- ..+.+..+|+++
T Consensus 123 lG~~VGY~IRFed~ts--------~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl--~TDiLlGlLKki~~ 191 (674)
T KOG0922|consen 123 LGEEVGYTIRFEDSTS--------KDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSL--HTDILLGLLKKILK 191 (674)
T ss_pred cCceeeeEEEecccCC--------CceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhh--HHHHHHHHHHHHHh
Confidence 2222232333221 1258999999999988776665 78999999999997221 122222333322
Q ss_pred -CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchh-hHHHHHHH--hhcCCCcEEE
Q 011908 274 -PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-SIIGQLIT--EHAKGGKCIV 349 (475)
Q Consensus 274 -~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~~~~--~~~~~~~~lV 349 (475)
+++.++++||||+.. .....|+..-.++.+.|.... ++..+...+..+-. ..+.-+++ ...+.+.+||
T Consensus 192 ~R~~LklIimSATlda---~kfS~yF~~a~i~~i~GR~fP-----Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILv 263 (674)
T KOG0922|consen 192 KRPDLKLIIMSATLDA---EKFSEYFNNAPILTIPGRTFP-----VEILYLKEPTADYVDAALITVIQIHLTEPPGDILV 263 (674)
T ss_pred cCCCceEEEEeeeecH---HHHHHHhcCCceEeecCCCCc-----eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEE
Confidence 456789999999874 455666766666666554322 23333333332222 22222222 1245679999
Q ss_pred EeCChHHHHHHHHHHHcc-------C--CeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCC
Q 011908 350 FTQTKRDADRLAHAMAKS-------Y--NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVL 420 (475)
Q Consensus 350 f~~~~~~~~~l~~~l~~~-------~--~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~ 420 (475)
|.+..++.+.+++.|.+. . .+.++||.++.+++.++++.-..|..+|++||++++..+.||++..||+-+.
T Consensus 264 FLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~ 343 (674)
T KOG0922|consen 264 FLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGF 343 (674)
T ss_pred EeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCc
Confidence 999999999999998541 1 2467999999999999999888899999999999999999999999997443
Q ss_pred -------CCChhH--------HH--hhccCCCCC--CCcEEEeeChhhhhhc-CCCchhhhhh
Q 011908 421 -------ERKEVQ--------FL--STQISRPGK--SRVLSEMLDADLLSSQ-GSPLKEVETC 463 (475)
Q Consensus 421 -------~~~~~~--------~~--~gR~gR~g~--~~~~~~~~~~~~~~~~-~~~~~~~~~~ 463 (475)
|+++.+ +- .||+||+|| +|+|+-+++.+++..+ .....+|.++
T Consensus 344 vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~ 406 (674)
T KOG0922|consen 344 VKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRV 406 (674)
T ss_pred eEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeee
Confidence 233322 22 899999998 4899999999888433 3334444444
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=4.3e-24 Score=219.12 Aligned_cols=311 Identities=20% Similarity=0.203 Sum_probs=209.9
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-- 198 (475)
.+++.| .+..+.-.+..+.+++||.|||+++.+|++...+. |..+.|++|+..||.|-++++..++.
T Consensus 82 ~~ydVQ--liGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 82 RHFDVQ--LLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred CcCchH--HhcchHhcCCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 456666 45454444567999999999999999999877754 55699999999999999998888765
Q ss_pred CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhC-CCC-----CCCccEEEEeccccccccC----------
Q 011908 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALN-----LSEVQFVVLDEADQMLSVG---------- 261 (475)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~-~~~-----~~~l~~vIiDE~H~~~~~~---------- 261 (475)
++.+.++.++.+....... ..++|++|||..+ .+++... ... ...+.++||||+|.++-..
T Consensus 151 Glsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~ 228 (908)
T PRK13107 151 GLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGA 228 (908)
T ss_pred CCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCC
Confidence 7888888888876443332 2589999999999 7877665 222 2678899999999865220
Q ss_pred ------cHHHHHHHHHhCC-------------------C-----------------------------------------
Q 011908 262 ------FAEDVEVILERLP-------------------Q----------------------------------------- 275 (475)
Q Consensus 262 ------~~~~~~~il~~~~-------------------~----------------------------------------- 275 (475)
....+..+...+. .
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~ 308 (908)
T PRK13107 229 AEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLH 308 (908)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHH
Confidence 0111111110000 0
Q ss_pred ---------------------------------------------------------------------------CCcEE
Q 011908 276 ---------------------------------------------------------------------------NRQSM 280 (475)
Q Consensus 276 ---------------------------------------------------------------------------~~~~l 280 (475)
..++.
T Consensus 309 ~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~ 388 (908)
T PRK13107 309 HVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLA 388 (908)
T ss_pred HHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhh
Confidence 01344
Q ss_pred EEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhh-HHHHHHHhhcCCCcEEEEeCChHHHHH
Q 011908 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADR 359 (475)
Q Consensus 281 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~l~~~~~~~~~~~~~lVf~~~~~~~~~ 359 (475)
+||+|.......+...| +..++.+...... .....+. .+..+..+|.. ++..+.+.+..|.++||||.|++.++.
T Consensus 389 GMTGTa~te~~Ef~~iY--~l~Vv~IPTnkp~-~R~d~~d-~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ 464 (908)
T PRK13107 389 GMTGTADTEAFEFQHIY--GLDTVVVPTNRPM-VRKDMAD-LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSEL 464 (908)
T ss_pred cccCCChHHHHHHHHHh--CCCEEECCCCCCc-cceeCCC-cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHH
Confidence 55555444333333222 1222222111110 0011111 12222333433 455555556789999999999999999
Q ss_pred HHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC---------------------------
Q 011908 360 LAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN--------------------------- 411 (475)
Q Consensus 360 l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~--------------------------- 411 (475)
++..|. .++++..+|++++..++..+.+.|+.|. |+|||+++++|.||.=
T Consensus 465 ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~ 542 (908)
T PRK13107 465 LARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQ 542 (908)
T ss_pred HHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHH
Confidence 999995 4789999999999999999999999998 9999999999999852
Q ss_pred ----------CCEEEecCCCCC--hhHHHhhccCCCCCCCcEEEeeChhhh
Q 011908 412 ----------VDLVELVVLERK--EVQFLSTQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 412 ----------~~~vI~~~~~~~--~~~~~~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
=-+||--..+.| ...|+.||+||-|.+|.+-++++-+|.
T Consensus 543 ~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 543 IRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred hhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 124555444444 345559999999999999999987665
No 104
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=5.8e-23 Score=217.80 Aligned_cols=318 Identities=19% Similarity=0.260 Sum_probs=212.1
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
+|++||.+.+..+. .+.+.|+..++|.|||+.+ ++++..+.... +....+|||||. .+..||.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~-----~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR-----GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc-----CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 68999999998775 4678999999999999876 44444443211 223458999996 5668899999999
Q ss_pred CCCCceEEEEcCCChhHHHHH---hhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC
Q 011908 197 APSLDTICVYGGTPISHQMRA---LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~---~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~ 273 (475)
++.+.+..+.|+......... .....+|+|+|++.+..... .+.--..++||+||+|++-+. .......+..+
T Consensus 242 ~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 242 CPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred CCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 998888888776543322211 12347999999998865322 121235679999999998764 33445555666
Q ss_pred CCCCcEEEEeeecChhH-HH---HHHHhcCC--------------------------------CcEEE-eecCCcccccC
Q 011908 274 PQNRQSMMFSATMPPWI-RS---LTNKYLKN--------------------------------PLTVD-LVGDSDQKLAD 316 (475)
Q Consensus 274 ~~~~~~l~~SAT~~~~~-~~---~~~~~~~~--------------------------------~~~~~-~~~~~~~~~~~ 316 (475)
. ....+++||||..+- .. ++.....+ |..+. ...+....++.
T Consensus 318 ~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 S-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred h-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 3 456799999985321 11 00000000 00000 00000000000
Q ss_pred CeEE-EEE-------------------------------------------------------------eccCcchhhHH
Q 011908 317 GISL-YSI-------------------------------------------------------------ATSMYEKPSII 334 (475)
Q Consensus 317 ~~~~-~~~-------------------------------------------------------------~~~~~~k~~~l 334 (475)
.... ..+ ......|..++
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 0000 000 00112345555
Q ss_pred HHHHHhh-cCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcC---CCcEEEEecccccCCCC
Q 011908 335 GQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG---RFNILIATDVAARGLDV 409 (475)
Q Consensus 335 ~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g---~~~vLvaT~~l~~GiDi 409 (475)
..++..+ ..+.++||||......+.+..+|. .++.+..+||+++..+|..+++.|.+. ...+|++|.+.+.|+|+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 5565543 347799999999999999999884 578999999999999999999999763 34679999999999999
Q ss_pred CCCCEEEecCCCCChhHHH--hhccCCCCCCCcE--EEeeChhhh
Q 011908 410 PNVDLVELVVLERKEVQFL--STQISRPGKSRVL--SEMLDADLL 450 (475)
Q Consensus 410 p~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~--~~~~~~~~~ 450 (475)
..+++||+||+++++.... ++|+.|.|+...+ +.++..+-.
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 9999999999999998887 8999999987644 455555433
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=3.3e-23 Score=218.05 Aligned_cols=322 Identities=19% Similarity=0.182 Sum_probs=209.2
Q ss_pred CCcHHHHHHhhhhhcC---C-cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 121 KLFPIQKAVLEPAMQG---R-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~---~-~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
..++.|..++..+... . .+++.+|||+|||.+++.+++..+... .....+++++.|++.+.++++++++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 3589999999888754 4 678999999999999988888776542 124678999999999999999999987
Q ss_pred CCCCceEEE--EcCCChhHHHHH-----h--------h-CCCCEEEEccHHHHHH-HHhCCCC-C--CCccEEEEecccc
Q 011908 197 APSLDTICV--YGGTPISHQMRA-----L--------D-YGVDAVVGTPGRVIDL-IKRNALN-L--SEVQFVVLDEADQ 256 (475)
Q Consensus 197 ~~~~~~~~~--~g~~~~~~~~~~-----~--------~-~~~~Ilv~T~~~l~~~-l~~~~~~-~--~~l~~vIiDE~H~ 256 (475)
+....+... .+.......... . . ....+.++|+..+... ....... + -..+++|+||+|.
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 754333332 222211111100 0 0 0134445555444331 1111111 1 1246899999998
Q ss_pred ccccCcHHHHHHHHHhC-CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcch--hhH
Q 011908 257 MLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK--PSI 333 (475)
Q Consensus 257 ~~~~~~~~~~~~il~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--~~~ 333 (475)
+.+......+..++..+ ..+..+++||||+|+.........+.....+.....................+..+. ...
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 77663222222222222 346779999999999998888887766555543211000000000000000111111 134
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHccCC-eeeecCCCCHHHHHHHHHHHh----cCCCcEEEEecccccCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYN-CEPLHGDISQSQRERTLSAFR----DGRFNILIATDVAARGLD 408 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~-~~~lh~~~~~~~r~~~~~~F~----~g~~~vLvaT~~l~~GiD 408 (475)
...+......+.+++|.|||+..|.++...|+.... +..+||++...+|.+.++.+. .+...|+|||+++|.|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 445556667789999999999999999999987655 999999999999998888654 567899999999999999
Q ss_pred CCCCCEEEecCCCCChhHHHhhccCCCC--CCCcEEEeeChh
Q 011908 409 VPNVDLVELVVLERKEVQFLSTQISRPG--KSRVLSEMLDAD 448 (475)
Q Consensus 409 ip~~~~vI~~~~~~~~~~~~~gR~gR~g--~~~~~~~~~~~~ 448 (475)
+ +.+.||---+|-+...|..||+.|.| .+|..+.+...+
T Consensus 510 i-dfd~mITe~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 510 I-DFDVLITELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred c-ccCeeeecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 9 69999988777666666667777777 345555555433
No 106
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.7e-22 Score=206.20 Aligned_cols=311 Identities=20% Similarity=0.277 Sum_probs=213.7
Q ss_pred CCCcHHHHHHhhhhhcC----CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~----~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
..+.+-|..+.+.+... ...++.|.||||||.+|+-.+-..+. .|.++|+++|-.+|..|+.++|+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~---------~GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA---------QGKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---------cCCEEEEEeccccchHHHHHHHHH
Confidence 36789999999998765 46899999999999999888877773 389999999999999999999999
Q ss_pred hCCCCceEEEEcCCChhHHHH----HhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccc---C---cHHH
Q 011908 196 SAPSLDTICVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV---G---FAED 265 (475)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~---~---~~~~ 265 (475)
.|. .++.++.++.+..++.. .......|+|||=..+ ...|+++++||+||-|.-.-. + ...+
T Consensus 268 rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 268 RFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred HhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 996 78888888877665533 3334599999992211 135889999999999964311 1 2233
Q ss_pred HHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcch-----hhHHHHHHHh
Q 011908 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-----PSIIGQLITE 340 (475)
Q Consensus 266 ~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-----~~~l~~~~~~ 340 (475)
+.....+ ..++.+++-||||.=+....+... .-..+.+...........+..........+. ..++..+-+.
T Consensus 340 vA~~Ra~-~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 340 VAVLRAK-KENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHH-HhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 3333333 367889999999764333333211 1122222222222222333333322222222 4566677677
Q ss_pred hcCCCcEEEEeCChHHH------------------------------------------------------------HHH
Q 011908 341 HAKGGKCIVFTQTKRDA------------------------------------------------------------DRL 360 (475)
Q Consensus 341 ~~~~~~~lVf~~~~~~~------------------------------------------------------------~~l 360 (475)
...+.|+|+|.|.+.-+ |++
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 78899999998775421 567
Q ss_pred HHHHHc---cCCeeeecCCCCHH--HHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCC--------hh-H
Q 011908 361 AHAMAK---SYNCEPLHGDISQS--QRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERK--------EV-Q 426 (475)
Q Consensus 361 ~~~l~~---~~~~~~lh~~~~~~--~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~--------~~-~ 426 (475)
++.|.+ +.++..+.++.... .-+..+..|.+|+.+|||.|+++..|.|+|+++.|.+.|++.. .. .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 777655 45677787777543 3468899999999999999999999999999999988766532 11 1
Q ss_pred -----HHhhccCCCCCCCcE-EEeeChhhh
Q 011908 427 -----FLSTQISRPGKSRVL-SEMLDADLL 450 (475)
Q Consensus 427 -----~~~gR~gR~g~~~~~-~~~~~~~~~ 450 (475)
|+.||+||.+..|.+ +..+.|++.
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCCcH
Confidence 117888888777765 455555544
No 107
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=4.3e-23 Score=200.12 Aligned_cols=311 Identities=13% Similarity=0.166 Sum_probs=210.8
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC-C
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-P 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~-~ 198 (475)
...+++-.+.+.++..++-++|.|.||||||...-..+...=+. ..|..+-+..|.|..|..++.+..+-. .
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-------k~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-------KGGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-------cCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 34567777888888888899999999999997543333322111 224558888999999999887776532 1
Q ss_pred C----CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc-ccCcHHHHHHHHHhC
Q 011908 199 S----LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFAEDVEVILERL 273 (475)
Q Consensus 199 ~----~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~-~~~~~~~~~~il~~~ 273 (475)
. ++...-+.+.. ....-|-+.|.++|+..+..+. .+.+++++||||+|.-. ..+..-.+-.-+.++
T Consensus 337 kLG~eVGYsIRFEdcT--------SekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~ 407 (902)
T KOG0923|consen 337 KLGHEVGYSIRFEDCT--------SEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARF 407 (902)
T ss_pred ccccccceEEEecccc--------CcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhh
Confidence 1 12222222222 1224688999999988776544 48899999999999621 111111111112344
Q ss_pred CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhH-HHHHHHh--hcCCCcEEEE
Q 011908 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI-IGQLITE--HAKGGKCIVF 350 (475)
Q Consensus 274 ~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-l~~~~~~--~~~~~~~lVf 350 (475)
.++..++.+|||+.. .....|+.+..+..+.|..- .+..++...+..+-.++ +..+++- -.+.+.+|||
T Consensus 408 RpdLKllIsSAT~DA---ekFS~fFDdapIF~iPGRRy-----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVF 479 (902)
T KOG0923|consen 408 RPDLKLLISSATMDA---EKFSAFFDDAPIFRIPGRRY-----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVF 479 (902)
T ss_pred CCcceEEeeccccCH---HHHHHhccCCcEEeccCccc-----ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEE
Confidence 678899999999875 33455666666665544321 13444444444433332 2222221 1246889999
Q ss_pred eCChHHHHHHHHHHHc----------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCC
Q 011908 351 TQTKRDADRLAHAMAK----------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVL 420 (475)
Q Consensus 351 ~~~~~~~~~l~~~l~~----------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~ 420 (475)
....++.+.+.+.|.+ ++-+.++|+.++++.+..+++.-.+|-.+|++||++++..+.|+++..||+-+.
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 9999999888877743 345778999999999999999999999999999999999999999999997544
Q ss_pred C-------CChhHHH----------hhccCCCCC--CCcEEEeeChhhhhhcC
Q 011908 421 E-------RKEVQFL----------STQISRPGK--SRVLSEMLDADLLSSQG 454 (475)
Q Consensus 421 ~-------~~~~~~~----------~gR~gR~g~--~~~~~~~~~~~~~~~~~ 454 (475)
. +.+...+ .||+||+|| +|+|+-+++...+....
T Consensus 560 ~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eL 612 (902)
T KOG0923|consen 560 VKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHEL 612 (902)
T ss_pred ccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhh
Confidence 3 2222222 799999998 47999999977665433
No 108
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=4.4e-22 Score=205.22 Aligned_cols=326 Identities=17% Similarity=0.171 Sum_probs=227.8
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC-C-
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-P- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~-~- 198 (475)
..+..+.++++.+.+++.+++.|.||||||......+++...... ....+++..|.|.-|..+++++..-- .
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~ 246 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGES 246 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhccc
Confidence 467889999999999999999999999999988777777765522 45668888999999999888876533 2
Q ss_pred -CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc-ccCcHHHHHHHHHhCCCC
Q 011908 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFAEDVEVILERLPQN 276 (475)
Q Consensus 199 -~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~-~~~~~~~~~~il~~~~~~ 276 (475)
+-.+..-.+..+ .......+++||.+.|+..+... -.+.++.++|+||+|.-. +.+|.-.+.+.+-..+++
T Consensus 247 ~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~ 319 (924)
T KOG0920|consen 247 LGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPD 319 (924)
T ss_pred cCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCC
Confidence 211211111111 11122689999999999998874 348899999999999643 333555555555555688
Q ss_pred CcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCccccc--------------CCeEEE------------EEeccCcch
Q 011908 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA--------------DGISLY------------SIATSMYEK 330 (475)
Q Consensus 277 ~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~------------~~~~~~~~k 330 (475)
.++++||||+.. .....|++....+.+.|....... .....+ .........
T Consensus 320 LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 396 (924)
T KOG0920|consen 320 LKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEID 396 (924)
T ss_pred ceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccccc
Confidence 999999999873 445556666555555443211000 000000 000011123
Q ss_pred hhHHHHHHHhh---cCCCcEEEEeCChHHHHHHHHHHHc--------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011908 331 PSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK--------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (475)
Q Consensus 331 ~~~l~~~~~~~---~~~~~~lVf~~~~~~~~~l~~~l~~--------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 399 (475)
..++..+++.+ ...+.+|||.|+.++...+.+.|.. .+-+.++|+.|+..+++.+...-..|..+|+++
T Consensus 397 ~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIla 476 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILA 476 (924)
T ss_pred HHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhh
Confidence 44455555433 3467999999999999999999853 255778999999999999999999999999999
Q ss_pred ecccccCCCCCCCCEEEe--------cCCCCChhHHH---------hhccCCCCC--CCcEEEeeChhhhhhcCC--Cch
Q 011908 400 TDVAARGLDVPNVDLVEL--------VVLERKEVQFL---------STQISRPGK--SRVLSEMLDADLLSSQGS--PLK 458 (475)
Q Consensus 400 T~~l~~GiDip~~~~vI~--------~~~~~~~~~~~---------~gR~gR~g~--~~~~~~~~~~~~~~~~~~--~~~ 458 (475)
|++++.+|.|+++-+||+ ||+..+..... .||.||+|| .|.|+.+++...+..... .+.
T Consensus 477 TNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~P 556 (924)
T KOG0920|consen 477 TNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLP 556 (924)
T ss_pred hhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCCh
Confidence 999999999999999996 56655543332 899999997 799999999876643332 444
Q ss_pred hhhh
Q 011908 459 EVET 462 (475)
Q Consensus 459 ~~~~ 462 (475)
++.+
T Consensus 557 EilR 560 (924)
T KOG0920|consen 557 EILR 560 (924)
T ss_pred HHHh
Confidence 4443
No 109
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.9e-20 Score=178.40 Aligned_cols=163 Identities=20% Similarity=0.275 Sum_probs=121.8
Q ss_pred CCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChH
Q 011908 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355 (475)
Q Consensus 276 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~ 355 (475)
..|++++||||.++-..... ...+...-. ...+. -+...+......-.+++..+.+...++.+++|-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~-----~~vveQiIR-PTGLl--DP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG-----GNVVEQIIR-PTGLL--DPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc-----CceeEEeec-CCCCC--CCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999999875443221 111111000 00011 12223334445567788888888888999999999999
Q ss_pred HHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCC-----hhHHH-
Q 011908 356 DADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERK-----EVQFL- 428 (475)
Q Consensus 356 ~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~-----~~~~~- 428 (475)
.||.+.++|.+ ++++..+|++...-+|.+++.+.+.|.++|||..+.+-+|+|+|.|..|.++|++.- ..+.+
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999965 799999999999999999999999999999999999999999999999999988753 33333
Q ss_pred -hhccCCCCCCCcEEEeeCh
Q 011908 429 -STQISRPGKSRVLSEMLDA 447 (475)
Q Consensus 429 -~gR~gR~g~~~~~~~~~~~ 447 (475)
+||+.|-- .|+++++.+.
T Consensus 538 tIGRAARN~-~GkvIlYAD~ 556 (663)
T COG0556 538 TIGRAARNV-NGKVILYADK 556 (663)
T ss_pred HHHHHhhcc-CCeEEEEchh
Confidence 56665543 4888888775
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.88 E-value=2e-20 Score=195.14 Aligned_cols=295 Identities=17% Similarity=0.141 Sum_probs=175.2
Q ss_pred CcHHHHHHhhhhhc----------CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHH
Q 011908 122 LFPIQKAVLEPAMQ----------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 122 l~~~Q~~~i~~i~~----------~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 191 (475)
++.+|.+++..+.. .+..++.++||||||++++..+...+.. ...+++||+||+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-------cCCCeEEEEECcHHHHHHHHH
Confidence 78999999987642 2468999999999999887666544421 336789999999999999999
Q ss_pred HHHHhCCCCceEEEEcCCChhHHHHHhhC-CCCEEEEccHHHHHHHHhC--CCCCCCc-cEEEEeccccccccCcHHHHH
Q 011908 192 EFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRN--ALNLSEV-QFVVLDEADQMLSVGFAEDVE 267 (475)
Q Consensus 192 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~--~~~~~~l-~~vIiDE~H~~~~~~~~~~~~ 267 (475)
.|..+..+.. .+..+...-...+.. ...|+|+|.+++...+... ....... -+||+||||+... + .+.
T Consensus 312 ~f~~~~~~~~----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~---~-~~~ 383 (667)
T TIGR00348 312 EFQSLQKDCA----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY---G-ELA 383 (667)
T ss_pred HHHhhCCCCC----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc---h-HHH
Confidence 9999864211 111111111222222 3689999999997644321 1111111 2899999999532 2 333
Q ss_pred HHHHhCCCCCcEEEEeeecChhH----HHHHHHhcCCCcEEEeecCCcccccCCe--EEEEEeccC--------------
Q 011908 268 VILERLPQNRQSMMFSATMPPWI----RSLTNKYLKNPLTVDLVGDSDQKLADGI--SLYSIATSM-------------- 327 (475)
Q Consensus 268 ~il~~~~~~~~~l~~SAT~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------------- 327 (475)
..++..-++...++|||||.... .......++++. ... ...+.+.+.. +..+.....
T Consensus 384 ~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i-~~Y--~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 384 KNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYL-HRY--FITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeE-EEe--eHHHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 34433335678999999986421 111110011111 110 0000111100 000000000
Q ss_pred ----------cc----------------------hhhHHHHHHHh----h-cCCCcEEEEeCChHHHHHHHHHHHcc---
Q 011908 328 ----------YE----------------------KPSIIGQLITE----H-AKGGKCIVFTQTKRDADRLAHAMAKS--- 367 (475)
Q Consensus 328 ----------~~----------------------k~~~l~~~~~~----~-~~~~~~lVf~~~~~~~~~l~~~l~~~--- 367 (475)
.+ -......+++. . ..+++++|||.++++|..+.+.|.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 00 00111112211 1 12489999999999999999887442
Q ss_pred ---CCeeeecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEecccccCCCCCCCCEEEecCCCC
Q 011908 368 ---YNCEPLHGDISQS---------------------QRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLVELVVLER 422 (475)
Q Consensus 368 ---~~~~~lh~~~~~~---------------------~r~~~~~~F~~-g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~ 422 (475)
.....+++..+.+ ....++++|++ +..+|||+++++.+|+|.|.+++++...+-+
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk 620 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK 620 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc
Confidence 2344555543322 22478889976 6789999999999999999999999887766
Q ss_pred ChhHHH--hhccCCC
Q 011908 423 KEVQFL--STQISRP 435 (475)
Q Consensus 423 ~~~~~~--~gR~gR~ 435 (475)
+.. .+ +||+-|.
T Consensus 621 ~h~-LlQai~R~nR~ 634 (667)
T TIGR00348 621 YHG-LLQAIARTNRI 634 (667)
T ss_pred ccH-HHHHHHHhccc
Confidence 533 33 7888883
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=3.6e-20 Score=190.95 Aligned_cols=119 Identities=22% Similarity=0.357 Sum_probs=101.7
Q ss_pred hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCC
Q 011908 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (475)
Q Consensus 331 ~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDi 409 (475)
..++..+.+...++.+++|||++++.++.+++.|.+ ++.+..+||+++..+|.+++..|++|++.|||||+.+++|+|+
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDi 508 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDL 508 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeee
Confidence 345555555566788999999999999999999964 6899999999999999999999999999999999999999999
Q ss_pred CCCCEEEecC-----CCCChhHHH--hhccCCCCCCCcEEEeeChhhh
Q 011908 410 PNVDLVELVV-----LERKEVQFL--STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 410 p~~~~vI~~~-----~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
|++++||+++ .|++..+|+ +||+||. ..|.++++++..+.
T Consensus 509 P~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 509 PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITD 555 (655)
T ss_pred CCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCH
Confidence 9999999988 577777777 6666665 46899999886543
No 112
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=9.5e-21 Score=178.00 Aligned_cols=335 Identities=14% Similarity=0.180 Sum_probs=223.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEE
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~l 177 (475)
...|...+.++...+.+++..-...+..+.+.+..+.+++-+++.|+||||||...-..++...... ...+.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~~v~ 95 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LTGVA 95 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------cccee
Confidence 4457889999999999999877778888889999899999999999999999987666666555442 24588
Q ss_pred EEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011908 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~ 257 (475)
...|.+.-|.+++.+..+-. ++....-.|-.-..+ .......-+-++|.++|+........ +..++++|+||+|.-
T Consensus 96 CTQprrvaamsva~RVadEM-Dv~lG~EVGysIrfE--dC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahER 171 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEM-DVTLGEEVGYSIRFE--DCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHER 171 (699)
T ss_pred ecCchHHHHHHHHHHHHHHh-ccccchhcccccccc--ccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhh
Confidence 88999999999888776533 121111111110000 00001112336788888776665554 788999999999962
Q ss_pred c-ccC-cHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhH-H
Q 011908 258 L-SVG-FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI-I 334 (475)
Q Consensus 258 ~-~~~-~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-l 334 (475)
. ..+ ....++.++..- ++.++++||||... ...+.|+.++..+.+.|... .+.++......+..+. +
T Consensus 172 tlATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~~P------vEi~Yt~e~erDylEaai 241 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGTHP------VEIFYTPEPERDYLEAAI 241 (699)
T ss_pred hHHHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCCCCc------eEEEecCCCChhHHHHHH
Confidence 2 110 112233333333 58899999999753 45667888888777755222 2334444444333332 2
Q ss_pred HHHHHh--hcCCCcEEEEeCChHHHHHHHHHHHc----------cCCeeeecCCCCHHHHHHHHHHHhc---C--CCcEE
Q 011908 335 GQLITE--HAKGGKCIVFTQTKRDADRLAHAMAK----------SYNCEPLHGDISQSQRERTLSAFRD---G--RFNIL 397 (475)
Q Consensus 335 ~~~~~~--~~~~~~~lVf~~~~~~~~~l~~~l~~----------~~~~~~lh~~~~~~~r~~~~~~F~~---g--~~~vL 397 (475)
..+++- ....+.++||..+.++.+..++.+.+ ..++..+| +.+++++++.... | ..+|+
T Consensus 242 rtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvV 317 (699)
T KOG0925|consen 242 RTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVV 317 (699)
T ss_pred HHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEE
Confidence 222221 22467899999999999999998863 25678888 5555555543322 2 25799
Q ss_pred EEecccccCCCCCCCCEEEecCCCC---------------ChhHHH--hhccCCCCC--CCcEEEeeChhhhhhcCCCch
Q 011908 398 IATDVAARGLDVPNVDLVELVVLER---------------KEVQFL--STQISRPGK--SRVLSEMLDADLLSSQGSPLK 458 (475)
Q Consensus 398 vaT~~l~~GiDip~~~~vI~~~~~~---------------~~~~~~--~gR~gR~g~--~~~~~~~~~~~~~~~~~~~~~ 458 (475)
|+|++++..+.++++.+||+-+..+ ++.+.- .||+||+|+ +|+|+.++++.-.........
T Consensus 318 vstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~t 397 (699)
T KOG0925|consen 318 VSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQT 397 (699)
T ss_pred EEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCC
Confidence 9999999999999999999755432 122222 789999996 699999999887654444443
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.87 E-value=5.9e-21 Score=191.33 Aligned_cols=294 Identities=22% Similarity=0.259 Sum_probs=188.8
Q ss_pred CCCcHHHHHHhhhhh----cCC-cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~-~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
..++.+|..||..+. +|+ ..|++|.||+|||.+| ++++..+.+. +.-.++|+++.+++|..|.+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS------GWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc------chhheeeEEechHHHHHHHHHHHH
Confidence 358999999998665 443 4899999999999998 6666666552 335679999999999999999999
Q ss_pred HhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC-----CCCCCCccEEEEeccccccccCcHHHHHHH
Q 011908 195 ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (475)
Q Consensus 195 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-----~~~~~~l~~vIiDE~H~~~~~~~~~~~~~i 269 (475)
.+.|.-.......+... ...+.|.++|.+.+....... .+....+++|||||||| +.....+.+
T Consensus 237 ~~~P~~~~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I 305 (875)
T COG4096 237 DFLPFGTKMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSI 305 (875)
T ss_pred HhCCCccceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHH
Confidence 99985443333322221 114799999999998877654 23445689999999998 356666677
Q ss_pred HHhCCCCCcEEEEeeecChhHHHHHHHhc-CCCc------------------EEEeecCC------ccccc-------CC
Q 011908 270 LERLPQNRQSMMFSATMPPWIRSLTNKYL-KNPL------------------TVDLVGDS------DQKLA-------DG 317 (475)
Q Consensus 270 l~~~~~~~~~l~~SAT~~~~~~~~~~~~~-~~~~------------------~~~~~~~~------~~~~~-------~~ 317 (475)
+..+..- .+++||||......-.-.++ +.|. .+.+.-+. ..... ..
T Consensus 306 ~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~ 383 (875)
T COG4096 306 LDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEA 383 (875)
T ss_pred HHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccc
Confidence 7776332 44559998653332222222 2222 22111000 00000 00
Q ss_pred e--E-EEEEecc------Ccchhh----HHHHHHHhhcC---CCcEEEEeCChHHHHHHHHHHHccC------CeeeecC
Q 011908 318 I--S-LYSIATS------MYEKPS----IIGQLITEHAK---GGKCIVFTQTKRDADRLAHAMAKSY------NCEPLHG 375 (475)
Q Consensus 318 ~--~-~~~~~~~------~~~k~~----~l~~~~~~~~~---~~~~lVf~~~~~~~~~l~~~l~~~~------~~~~lh~ 375 (475)
+ . ..+-..+ .....+ .+...+++... -+++||||.+..+|+.+...|...+ -+..+.|
T Consensus 384 i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~ 463 (875)
T COG4096 384 IDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG 463 (875)
T ss_pred cCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec
Confidence 0 0 0000000 000111 23333333111 3689999999999999999996532 2555666
Q ss_pred CCCHHHHHHHHHHHhcCC--CcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCC
Q 011908 376 DISQSQRERTLSAFRDGR--FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRP 435 (475)
Q Consensus 376 ~~~~~~r~~~~~~F~~g~--~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~ 435 (475)
+-. +-+..+..|...+ .+|.|+.+++..|||+|.|.++|++..-+|...|. +||+-|.
T Consensus 464 d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 464 DAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 633 3345566676533 57888889999999999999999999888888777 6666554
No 114
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.86 E-value=7e-20 Score=180.81 Aligned_cols=313 Identities=21% Similarity=0.269 Sum_probs=218.6
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
++++||.+-++.+. ++-+.|+....|-|||+.. ++++..+.... +.....+|++|-..| ..|.++|+++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-----~~~GPfLVi~P~StL-~NW~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-----GIPGPFLVIAPKSTL-DNWMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-----CCCCCeEEEeeHhhH-HHHHHHHHHh
Confidence 68999999998875 4567999999999999765 45554443211 213336999998876 5699999999
Q ss_pred CCCCceEEEEcCCChhHHH--HHhh-CCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC
Q 011908 197 APSLDTICVYGGTPISHQM--RALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~--~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~ 273 (475)
.|++++++++|+....... ..+. ...+|+|+|++..+..- ..+.--+..++||||+||+-+. ...+..+++.+
T Consensus 240 ~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 240 TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 9999999999876533321 1122 24899999999876431 1111224678999999998775 44455777777
Q ss_pred CCCCcEEEEeeecChhHHH-----------------------------------------HH------------------
Q 011908 274 PQNRQSMMFSATMPPWIRS-----------------------------------------LT------------------ 294 (475)
Q Consensus 274 ~~~~~~l~~SAT~~~~~~~-----------------------------------------~~------------------ 294 (475)
. ....+++|+||..+-.. .+
T Consensus 316 ~-~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 K-TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred c-ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 4 44578899997321000 00
Q ss_pred -----------------------------------------------HHhcCCCcEEEeecCCcccccCCeEEEEEeccC
Q 011908 295 -----------------------------------------------NKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327 (475)
Q Consensus 295 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (475)
+....+|.... | .+.. ............
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~--g-~ePg--~pyttdehLv~n 469 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFD--G-AEPG--PPYTTDEHLVTN 469 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccC--C-CCCC--CCCCcchHHHhc
Confidence 00001111110 0 0000 000111112234
Q ss_pred cchhhHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHH-HccCCeeeecCCCCHHHHHHHHHHHhcCC---CcEEEEecc
Q 011908 328 YEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR---FNILIATDV 402 (475)
Q Consensus 328 ~~k~~~l~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l-~~~~~~~~lh~~~~~~~r~~~~~~F~~g~---~~vLvaT~~ 402 (475)
..|..+|..++..+ ..|+++|||..--...+.+..+. -+++...-+.|.++.++|...++.|.... .-.|++|.+
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 55777888888764 46889999998888777777776 46789999999999999999999998754 558999999
Q ss_pred cccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCC--cEEEeeChhhh
Q 011908 403 AARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSR--VLSEMLDADLL 450 (475)
Q Consensus 403 l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~--~~~~~~~~~~~ 450 (475)
...|||+..++.||+||.+++|...+ ..|+-|.|+.. .++-+++....
T Consensus 550 GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred cccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 99999999999999999999998887 89999999876 45666666544
No 115
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=5.8e-20 Score=178.95 Aligned_cols=316 Identities=15% Similarity=0.236 Sum_probs=208.3
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC-
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~- 198 (475)
......+.+.+..|..++-+++.|.||||||......++ . .+.....-+-+..|.+..|..+++++.+-..
T Consensus 355 LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~----e----dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 355 LPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLY----E----DGYADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred cchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHH----h----cccccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 345677888888888888899999999999974433332 2 1223344566777999999999988776442
Q ss_pred CC----ceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc-ccCcH-HHHHHHHHh
Q 011908 199 SL----DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFA-EDVEVILER 272 (475)
Q Consensus 199 ~~----~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~-~~~~~-~~~~~il~~ 272 (475)
.+ +...-+.+.. .....|-+.|.+.|+....... .+..+++||+||||.-. +.+.. -.++..+..
T Consensus 427 ~lG~~VGYsIRFEdvT--------~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~lar 497 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVT--------SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR 497 (1042)
T ss_pred ccccccceEEEeeecC--------CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHh
Confidence 22 2222222222 1225788999999886554433 36789999999999632 11111 111222222
Q ss_pred CCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhh------cCCCc
Q 011908 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEH------AKGGK 346 (475)
Q Consensus 273 ~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~------~~~~~ 346 (475)
..+..+|++|||+.. ..+. .|+++.....+.|..-. +...+...+. .+.+...+++. ...+.
T Consensus 498 -RrdlKliVtSATm~a--~kf~-nfFgn~p~f~IpGRTyP-----V~~~~~k~p~---eDYVeaavkq~v~Ihl~~~~Gd 565 (1042)
T KOG0924|consen 498 -RRDLKLIVTSATMDA--QKFS-NFFGNCPQFTIPGRTYP-----VEIMYTKTPV---EDYVEAAVKQAVQIHLSGPPGD 565 (1042)
T ss_pred -hccceEEEeeccccH--HHHH-HHhCCCceeeecCCccc-----eEEEeccCch---HHHHHHHHhhheEeeccCCCCC
Confidence 357889999999875 3443 44544444444443221 1222222222 23333333321 23478
Q ss_pred EEEEeCChHHHHHHHHHHHc-----------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEE
Q 011908 347 CIVFTQTKRDADRLAHAMAK-----------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV 415 (475)
Q Consensus 347 ~lVf~~~~~~~~~l~~~l~~-----------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~v 415 (475)
++||.+..++.|-.+..+.. .+.+..+++.++.+-+.++++.-..|..+++|||++++..+.+|++.+|
T Consensus 566 ilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yV 645 (1042)
T KOG0924|consen 566 ILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYV 645 (1042)
T ss_pred EEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEE
Confidence 99999999888766666543 4678899999999999999998889999999999999999999999999
Q ss_pred EecCCC-------CCh--------hHHH--hhccCCCCCC--CcEEEeeChhhh--hhcCCCchhhhhhh
Q 011908 416 ELVVLE-------RKE--------VQFL--STQISRPGKS--RVLSEMLDADLL--SSQGSPLKEVETCT 464 (475)
Q Consensus 416 I~~~~~-------~~~--------~~~~--~gR~gR~g~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~ 464 (475)
|+-+.. +.+ .++- -||+||+||. |.|+-+|+.+.+ +++...+.+|++..
T Consensus 646 ID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTN 715 (1042)
T KOG0924|consen 646 IDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTN 715 (1042)
T ss_pred EecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcc
Confidence 975432 222 2222 6999999984 799999998654 55666677777654
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=2.1e-19 Score=180.71 Aligned_cols=312 Identities=17% Similarity=0.159 Sum_probs=207.1
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|. .+++.|.-..-.+..| -+.++.||+|||+++.++++...+. |.++.+++|+..||.|.++++..++
T Consensus 76 g~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 54 6888888877777764 5789999999999999998887755 8889999999999999999999887
Q ss_pred C--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHH-HHHHhC------CCCCCCccEEEEecccccccc--------
Q 011908 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRN------ALNLSEVQFVVLDEADQMLSV-------- 260 (475)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~l~~~------~~~~~~l~~vIiDE~H~~~~~-------- 260 (475)
. ++.+.++.++.+..++...+ .++|.+||...+- ++|+.. ......+.++||||+|.++-.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiI 221 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVL 221 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceee
Confidence 6 67888888888766665555 4799999987763 333221 122456889999999985411
Q ss_pred -------CcHHHHHHHHHhCCC----------------------------------------------------------
Q 011908 261 -------GFAEDVEVILERLPQ---------------------------------------------------------- 275 (475)
Q Consensus 261 -------~~~~~~~~il~~~~~---------------------------------------------------------- 275 (475)
.....+..+...+.+
T Consensus 222 Sg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d 301 (764)
T PRK12326 222 AGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRD 301 (764)
T ss_pred eCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 001111111111100
Q ss_pred ------------------------------------------------------------CCcEEEEeeecChhHHHHHH
Q 011908 276 ------------------------------------------------------------NRQSMMFSATMPPWIRSLTN 295 (475)
Q Consensus 276 ------------------------------------------------------------~~~~l~~SAT~~~~~~~~~~ 295 (475)
...+.+||+|.......+..
T Consensus 302 ~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~ 381 (764)
T PRK12326 302 VHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQ 381 (764)
T ss_pred CcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHH
Confidence 12567777777655444444
Q ss_pred HhcCCCcEEEeecCCcccccCCeEEEEEeccCcchh-hHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeee
Q 011908 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPL 373 (475)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~l 373 (475)
.|-.+ .+.+.... .......+. .+.....+|. .++..+.+.+..|.|+||.|.+++.++.++..|.+ +++...+
T Consensus 382 iY~l~--Vv~IPtnk-p~~R~d~~d-~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 382 FYDLG--VSVIPPNK-PNIREDEAD-RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred HhCCc--EEECCCCC-CceeecCCC-ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 44322 22222211 111111111 1222233343 34555556677899999999999999999999964 6888899
Q ss_pred cCCCCHHHHHHHHHHHhcCC-CcEEEEecccccCCCCCC---------------CCEEEecCCCCC--hhHHHhhccCCC
Q 011908 374 HGDISQSQRERTLSAFRDGR-FNILIATDVAARGLDVPN---------------VDLVELVVLERK--EVQFLSTQISRP 435 (475)
Q Consensus 374 h~~~~~~~r~~~~~~F~~g~-~~vLvaT~~l~~GiDip~---------------~~~vI~~~~~~~--~~~~~~gR~gR~ 435 (475)
+++....| .+++. ..|+ -.|.|||+++.+|.||.- =-+||--..+.| ...|+.||+||-
T Consensus 458 NAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 458 NAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 98855433 22222 2454 469999999999999862 235665545544 345559999999
Q ss_pred CCCCcEEEeeChhhh
Q 011908 436 GKSRVLSEMLDADLL 450 (475)
Q Consensus 436 g~~~~~~~~~~~~~~ 450 (475)
|.+|.+-+|++-+|.
T Consensus 535 GDpGss~f~lSleDd 549 (764)
T PRK12326 535 GDPGSSVFFVSLEDD 549 (764)
T ss_pred CCCCceeEEEEcchh
Confidence 999999888886554
No 117
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=5.4e-20 Score=164.69 Aligned_cols=182 Identities=42% Similarity=0.694 Sum_probs=148.0
Q ss_pred CCCCCCcHHHHHHhhhhhcC-CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 117 RGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
.++.+++++|.++++.+... ++.++.++||+|||.++..+++..+.. .....+++++|+..++.|+.+.+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~-------~~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR-------GKGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc-------cCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 45678999999999999988 899999999999999998888887744 1245799999999999999999998
Q ss_pred hCCCC--ceEEEEcCCChhHHHHHhhCCC-CEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHh
Q 011908 196 SAPSL--DTICVYGGTPISHQMRALDYGV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (475)
Q Consensus 196 ~~~~~--~~~~~~g~~~~~~~~~~~~~~~-~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~ 272 (475)
.+... ......++............+. +++++|++.+.+.+.........++++|+||+|.+....+...+..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 87642 3333445554344444455554 99999999999988876666778999999999998875588888899988
Q ss_pred CCCCCcEEEEeeecChhHHHHHHHhcCCCcEEE
Q 011908 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (475)
Q Consensus 273 ~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 305 (475)
+++..+++++|||+++........++.....+.
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 888899999999999888888888877555544
No 118
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.85 E-value=1.3e-18 Score=187.14 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=62.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHcc---CCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCC--EEEe
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAKS---YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVD--LVEL 417 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~~---~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~--~vI~ 417 (475)
.+++++||++|.+..+.++..|... .....+..+.. ..|.++++.|++|+..||++|+.+.+|||+|+.. .||+
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 3578999999999999999998641 12233444433 5788999999999999999999999999999765 5667
Q ss_pred cCCCC
Q 011908 418 VVLER 422 (475)
Q Consensus 418 ~~~~~ 422 (475)
...|.
T Consensus 752 ~~LPf 756 (850)
T TIGR01407 752 PRLPF 756 (850)
T ss_pred eCCCC
Confidence 66553
No 119
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=8.5e-20 Score=187.85 Aligned_cols=311 Identities=19% Similarity=0.158 Sum_probs=200.1
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-- 198 (475)
.+++.|. +..+.-.+..+..+.||+|||+++.+|++...+. |.++.+|+|+..||.|.++++..++.
T Consensus 82 ~~ydVQl--iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 82 RHFDVQL--IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CcchhHH--HhhhHhccCccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 5666664 4444444568999999999999999999877755 88899999999999999999999886
Q ss_pred CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhCC------CCCCCccEEEEecccccccc-----------
Q 011908 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQMLSV----------- 260 (475)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~~l~~vIiDE~H~~~~~----------- 260 (475)
++.+.+++++.+..++...+. ++|++||...+ .++|.... .....++++||||+|.++=.
T Consensus 151 Gl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~ 228 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQ 228 (913)
T ss_pred CCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCC
Confidence 678888888887666655554 89999998876 33333221 12377999999999986411
Q ss_pred -----CcHHHHHHHHHhCC-------------------------------------------------------------
Q 011908 261 -----GFAEDVEVILERLP------------------------------------------------------------- 274 (475)
Q Consensus 261 -----~~~~~~~~il~~~~------------------------------------------------------------- 274 (475)
.....+..+...+.
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~ 308 (913)
T PRK13103 229 AEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLT 308 (913)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHH
Confidence 00001111111000
Q ss_pred --------------------------------------------------------------------------CCCcEE
Q 011908 275 --------------------------------------------------------------------------QNRQSM 280 (475)
Q Consensus 275 --------------------------------------------------------------------------~~~~~l 280 (475)
...++.
T Consensus 309 ~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLs 388 (913)
T PRK13103 309 HVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLS 388 (913)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhc
Confidence 001445
Q ss_pred EEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhh-HHHHHHHhhcCCCcEEEEeCChHHHHH
Q 011908 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADR 359 (475)
Q Consensus 281 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~l~~~~~~~~~~~~~lVf~~~~~~~~~ 359 (475)
+||+|.......+...|- ..++.+..... ......+. .+..+..+|.. ++..+.+.+..|.|+||-+.|++.+|.
T Consensus 389 GMTGTa~te~~Ef~~iY~--l~Vv~IPTnkP-~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ 464 (913)
T PRK13103 389 GMTGTADTEAFEFRQIYG--LDVVVIPPNKP-LARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEH 464 (913)
T ss_pred cCCCCCHHHHHHHHHHhC--CCEEECCCCCC-cccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHH
Confidence 556665443333333332 22222211111 11111111 12233334443 445555567789999999999999999
Q ss_pred HHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCC-CcEEEEecccccCCCCC---------------------------
Q 011908 360 LAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR-FNILIATDVAARGLDVP--------------------------- 410 (475)
Q Consensus 360 l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~-~~vLvaT~~l~~GiDip--------------------------- 410 (475)
++..|.+ +++..+|+.+....|-+-+ . ..|+ -.|.|||+++.+|.||.
T Consensus 465 ls~~L~~~gi~h~VLNAk~~~~EA~II-a--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
T PRK13103 465 MSNLLKKEGIEHKVLNAKYHEKEAEII-A--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHHHcCCcHHHhccccchhHHHHH-H--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999954 6777778887543332222 2 3454 46999999999999994
Q ss_pred ----------CCCEEEecCCCCC--hhHHHhhccCCCCCCCcEEEeeChhhhh
Q 011908 411 ----------NVDLVELVVLERK--EVQFLSTQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 411 ----------~~~~vI~~~~~~~--~~~~~~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
+=-+||--..+.| ...|+.||+||-|.+|.+-+|++-+|.-
T Consensus 542 ~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 542 QKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 1224554444444 3455599999999999999888876553
No 120
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.5e-19 Score=184.06 Aligned_cols=288 Identities=20% Similarity=0.322 Sum_probs=194.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH
Q 011908 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 109 ~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 188 (475)
...+.|++..-+.|+..|+-....+..|++.-+.||||.|||.-.++..+... ..|.++++++||..|+.|
T Consensus 70 ~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a---------~kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 70 EFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA---------KKGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH---------hcCCeEEEEecCHHHHHH
Confidence 34455666544599999999999999999999999999999975544443333 337889999999999999
Q ss_pred HHHHHHHhCCCC---ceEE-EEcCCChhHH---HHHhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccc
Q 011908 189 VEKEFHESAPSL---DTIC-VYGGTPISHQ---MRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (475)
Q Consensus 189 ~~~~l~~~~~~~---~~~~-~~g~~~~~~~---~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~ 260 (475)
.++.++++.... .+.+ .++..+.+++ .+.+.+ +.+|+|+|.+-|.+.+.. +.-.+++++++|.+|.++..
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 999999987532 2222 3455454443 333444 499999997766655443 11136889999999986543
Q ss_pred C-----------cHHH-------HHHHHHhC------------------------CCCCcEEEEeeecChhH-H-HHHHH
Q 011908 261 G-----------FAED-------VEVILERL------------------------PQNRQSMMFSATMPPWI-R-SLTNK 296 (475)
Q Consensus 261 ~-----------~~~~-------~~~il~~~------------------------~~~~~~l~~SAT~~~~~-~-~~~~~ 296 (475)
+ |... +..+..++ .+..++++.|||..|.- + .+.+.
T Consensus 219 skNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfRe 298 (1187)
T COG1110 219 SKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRE 298 (1187)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHH
Confidence 1 2111 11111111 13457899999986642 1 12222
Q ss_pred hcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCC---hHHHHHHHHHHHc-cCCeee
Q 011908 297 YLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQT---KRDADRLAHAMAK-SYNCEP 372 (475)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~---~~~~~~l~~~l~~-~~~~~~ 372 (475)
.++ .. .|.......+.++.+... .-...+..+++.. |...|||++. ++.++++++.|.. ++++..
T Consensus 299 Llg-Fe----vG~~~~~LRNIvD~y~~~----~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~ 367 (1187)
T COG1110 299 LLG-FE----VGSGGEGLRNIVDIYVES----ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAEL 367 (1187)
T ss_pred HhC-Cc----cCccchhhhheeeeeccC----ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEE
Confidence 221 11 111111111212222221 4455566677776 5578999999 9999999999965 699999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEec----ccccCCCCC-CCCEEEecCCCCC
Q 011908 373 LHGDISQSQRERTLSAFRDGRFNILIATD----VAARGLDVP-NVDLVELVVLERK 423 (475)
Q Consensus 373 lh~~~~~~~r~~~~~~F~~g~~~vLvaT~----~l~~GiDip-~~~~vI~~~~~~~ 423 (475)
+|++ +.+.++.|..|++++||.+. ++-+|+|+| .++.+|+++.|+.
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 9985 37789999999999999874 788999999 5899999999943
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=9.2e-19 Score=182.02 Aligned_cols=116 Identities=26% Similarity=0.415 Sum_probs=99.5
Q ss_pred hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCC
Q 011908 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (475)
Q Consensus 331 ~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDi 409 (475)
..++..+.+....+.+++|||++.+.++.+++.|.. ++++..+||+++..+|..+++.|++|+..|||||+.+++|+|+
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdl 512 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDI 512 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccc
Confidence 344444444456688999999999999999999964 6899999999999999999999999999999999999999999
Q ss_pred CCCCEEEecCC-----CCChhHHH--hhccCCCCCCCcEEEeeCh
Q 011908 410 PNVDLVELVVL-----ERKEVQFL--STQISRPGKSRVLSEMLDA 447 (475)
Q Consensus 410 p~~~~vI~~~~-----~~~~~~~~--~gR~gR~g~~~~~~~~~~~ 447 (475)
|++++||+++. |.+...|+ +||+||. +.|.++++++.
T Consensus 513 p~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred cCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 99999999886 56667777 6777774 57899999984
No 122
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=5e-20 Score=182.25 Aligned_cols=306 Identities=16% Similarity=0.192 Sum_probs=191.6
Q ss_pred HHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC----CCc
Q 011908 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLD 201 (475)
Q Consensus 126 Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~----~~~ 201 (475)
-++++++|..+--++|+|.||||||...-..++.+=.. .+...++.-+-|..|.|..|..++++...-+. .+.
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~---s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVs 337 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFA---SEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVS 337 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccC---CccCCCCCeeeecCchHHHHHHHHHHHHHHhccCcccee
Confidence 34566667666669999999999997654444433222 11112344677888999888777766554332 223
Q ss_pred eEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC-------C
Q 011908 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-------P 274 (475)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-------~ 274 (475)
...-+.|.- .....|.+.|.+.|+..+.++. .+..++.||+||||.-.- +.+.+..+|.++ .
T Consensus 338 YqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 338 YQIRFDGTI--------GEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEEEecccc--------CCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHh
Confidence 333333322 2236899999999998887654 478999999999997321 223333333222 1
Q ss_pred ------CCCcEEEEeeecChhHHHHHHHhcC-CCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHH---HHhhcCC
Q 011908 275 ------QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQL---ITEHAKG 344 (475)
Q Consensus 275 ------~~~~~l~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~---~~~~~~~ 344 (475)
+....|.||||+--.-..-....+. .|..+.+.. ...+.. .++........-.+++... .+.+ +.
T Consensus 407 ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdA---RQfPVs-IHF~krT~~DYi~eAfrKtc~IH~kL-P~ 481 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDA---RQFPVS-IHFNKRTPDDYIAEAFRKTCKIHKKL-PP 481 (1172)
T ss_pred hhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeec---ccCceE-EEeccCCCchHHHHHHHHHHHHhhcC-CC
Confidence 1456899999964211111111221 222333311 111111 1111112222222333333 3333 57
Q ss_pred CcEEEEeCChHHHHHHHHHHHccCC-------------------------------------------------------
Q 011908 345 GKCIVFTQTKRDADRLAHAMAKSYN------------------------------------------------------- 369 (475)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~l~~~~~------------------------------------------------------- 369 (475)
|.+|||+....+.+.+++.|.+.++
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 7999999999999999988865211
Q ss_pred ---------------------------------------------eeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 011908 370 ---------------------------------------------CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (475)
Q Consensus 370 ---------------------------------------------~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~ 404 (475)
|..+++-++.+++.+++..-..|..-++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 56678888999999999999999999999999999
Q ss_pred cCCCCCCCCEEEecC--------CCCChh----HHH-----hhccCCCCCC--CcEEEeeChhhh
Q 011908 405 RGLDVPNVDLVELVV--------LERKEV----QFL-----STQISRPGKS--RVLSEMLDADLL 450 (475)
Q Consensus 405 ~GiDip~~~~vI~~~--------~~~~~~----~~~-----~gR~gR~g~~--~~~~~~~~~~~~ 450 (475)
..+.||++..||+-+ .-.... .|+ -||+||+||. |.|+-+|+..-+
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf 706 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVF 706 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHh
Confidence 999999999999743 322222 223 6999999985 799999987544
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=5.8e-19 Score=182.37 Aligned_cols=124 Identities=20% Similarity=0.141 Sum_probs=104.2
Q ss_pred cCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 011908 326 SMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 326 ~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l 403 (475)
+..+|...+...+.. +..+.++||||+|++.++.++..|. .++++..+|+ .+.+|+..+..|..+...|+|||+++
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 344566666666543 4568899999999999999999995 4789999997 58899999999999999999999999
Q ss_pred ccCCCCC---CCCE-----EEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 404 ARGLDVP---NVDL-----VELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 404 ~~GiDip---~~~~-----vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
+||+||+ .|.. ||....|.+...+. +||+||.|.+|.+.+|++.+|.-
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 9999999 4543 37778888876666 99999999999999999987764
No 124
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=3.7e-18 Score=169.53 Aligned_cols=318 Identities=19% Similarity=0.253 Sum_probs=212.5
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.|.+||++.+..+. ++...|+-.+.|-|||... ++.|..+.... + - -..+||+||.. +..||.++|..|
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~-k---~-~~paLIVCP~T-ii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSG-K---L-TKPALIVCPAT-IIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcc-c---c-cCceEEEccHH-HHHHHHHHHHHh
Confidence 46799999998765 3445899999999999644 44444443311 0 1 24599999964 578999999999
Q ss_pred CCCCceEEEEcCCChh--------HHHHH-----hhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcH
Q 011908 197 APSLDTICVYGGTPIS--------HQMRA-----LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 197 ~~~~~~~~~~g~~~~~--------~~~~~-----~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~ 263 (475)
++.+.+.++++..... ..... .....+|+++|++.+.-. ...+.-...+++|+||.|++-+. .
T Consensus 278 ~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNp--n 353 (923)
T KOG0387|consen 278 WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNP--N 353 (923)
T ss_pred CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCC--c
Confidence 9999999988766521 11111 112368999997765321 12233345789999999998875 3
Q ss_pred HHHHHHHHhCCCCCcEEEEeeecChhHHHHH-------------------------------------------------
Q 011908 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLT------------------------------------------------- 294 (475)
Q Consensus 264 ~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~------------------------------------------------- 294 (475)
..+...+.++ +..+.+++|+||..+-..-+
T Consensus 354 s~islackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387|consen 354 SKISLACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred cHHHHHHHhc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHH
Confidence 3444445555 45678889999742211100
Q ss_pred ----HHhc-------------CCCcEEEe------------------------e-cCC--------------cccccCCe
Q 011908 295 ----NKYL-------------KNPLTVDL------------------------V-GDS--------------DQKLADGI 318 (475)
Q Consensus 295 ----~~~~-------------~~~~~~~~------------------------~-~~~--------------~~~~~~~~ 318 (475)
..|+ .....+.+ . +.. .......-
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCc
Confidence 0000 00000000 0 000 00000000
Q ss_pred -------EEEEEeccCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHH--ccCCeeeecCCCCHHHHHHHHHH
Q 011908 319 -------SLYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMA--KSYNCEPLHGDISQSQRERTLSA 388 (475)
Q Consensus 319 -------~~~~~~~~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~--~~~~~~~lh~~~~~~~r~~~~~~ 388 (475)
+-+.-......|..++..++.. ...+.++++|..++.....+...|. .++.+..+.|..+...|..+.++
T Consensus 513 ~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~ 592 (923)
T KOG0387|consen 513 DEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDR 592 (923)
T ss_pred ccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHh
Confidence 0000112223466777777765 4568899999999999999999997 47999999999999999999999
Q ss_pred HhcCCC--cEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCc--EEEeeChhhh
Q 011908 389 FRDGRF--NILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRV--LSEMLDADLL 450 (475)
Q Consensus 389 F~~g~~--~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~--~~~~~~~~~~ 450 (475)
|.++.. -.|++|.+..-|+++..++.||+||+.+||.... .-|+.|.|++.. ++-+++..-.
T Consensus 593 Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 593 FNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred hcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 998763 4688889999999999999999999999998776 889999998763 4556665444
No 125
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=5.3e-19 Score=166.83 Aligned_cols=304 Identities=20% Similarity=0.240 Sum_probs=192.1
Q ss_pred CCCcHHHHHHhhhhhcC---CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 120 SKLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~---~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
..++|||.+++.....+ ++.+|..|+|+|||++.+-++.. + ...+|++|.+.....||...|+.|
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i-----------kK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I-----------KKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e-----------cccEEEEecCccCHHHHHHHHHhh
Confidence 46899999999998754 46899999999999988655442 2 456999999999999999999998
Q ss_pred CC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC--------CCCCCCccEEEEeccccccccCcHHHH
Q 011908 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--------ALNLSEVQFVVLDEADQMLSVGFAEDV 266 (475)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~--------~~~~~~l~~vIiDE~H~~~~~~~~~~~ 266 (475)
.. +-.+..++...+ +....++.|+|+|+.++.+--++. .+.-...+++++||+|.+...-|..
T Consensus 369 sti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRR-- 441 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRR-- 441 (776)
T ss_pred cccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHH--
Confidence 74 323444444332 223456899999987764221110 1112346789999999875544433
Q ss_pred HHHHHhCCCCCcEEEEeeecChhHHHHHHH-hcCCCcEE-------------------Eee----cCC-----cccccCC
Q 011908 267 EVILERLPQNRQSMMFSATMPPWIRSLTNK-YLKNPLTV-------------------DLV----GDS-----DQKLADG 317 (475)
Q Consensus 267 ~~il~~~~~~~~~l~~SAT~~~~~~~~~~~-~~~~~~~~-------------------~~~----~~~-----~~~~~~~ 317 (475)
++.....++ .+++|||+-.+-..+... ++-.|... .+- ++. .......
T Consensus 442 --Vlsiv~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 442 --VLSIVQAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred --HHHHHHHHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 333333333 689999974322211110 11111110 000 000 0000000
Q ss_pred eEEEEEeccCcchhhHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHHccCCeeeecCCCCHHHHHHHHHHHhcC-CCc
Q 011908 318 ISLYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDG-RFN 395 (475)
Q Consensus 318 ~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~lh~~~~~~~r~~~~~~F~~g-~~~ 395 (475)
.-.+ +. .-.|......+++-+ ..+.++|||..+.-.....+-.|.+ -.+.|..++.+|.++++.|+-+ +++
T Consensus 519 ~lLy-vM--NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vN 591 (776)
T KOG1123|consen 519 MLLY-VM--NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVN 591 (776)
T ss_pred heee-ec--CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccc
Confidence 1111 11 112444444455433 2588999999988888777777743 4589999999999999999854 688
Q ss_pred EEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccC---CCCCC---C---cEEEeeChhhhhh
Q 011908 396 ILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQIS---RPGKS---R---VLSEMLDADLLSS 452 (475)
Q Consensus 396 vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~g---R~g~~---~---~~~~~~~~~~~~~ 452 (475)
.++-+.+....+|+|.++++|..........|-.||.| |+-+. + ..+.+++.|-.++
T Consensus 592 TIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 592 TIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred eEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 89999999999999999999998777665555544444 44432 2 3345555555443
No 126
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.79 E-value=5.8e-18 Score=171.04 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=117.0
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-- 198 (475)
.|-.||.+.+..+-.+...+|.+||.+|||++...++=..+.. .....+++++||++|..|+...+...+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-------SDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh-------cCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 5789999999999999999999999999999876665555533 4466799999999999999888777652
Q ss_pred CC-ceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh---CCCCCCCccEEEEeccccccccCcHHHHHHHHHhCC
Q 011908 199 SL-DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR---NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (475)
Q Consensus 199 ~~-~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~---~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~ 274 (475)
.+ ....+.|..+...... .-.|+|+|+-|+.+...+.. ..-...++.++|+||+|.+....-+--++.++...
T Consensus 584 t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 11 1222334333222211 22489999999999988866 33456789999999999988776566666666555
Q ss_pred CCCcEEEEeeecCh
Q 011908 275 QNRQSMMFSATMPP 288 (475)
Q Consensus 275 ~~~~~l~~SAT~~~ 288 (475)
.+.++++|||+.+
T Consensus 661 -~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 -PCPFLVLSATIGN 673 (1330)
T ss_pred -CCCeeEEecccCC
Confidence 4679999999854
No 127
>COG4889 Predicted helicase [General function prediction only]
Probab=99.79 E-value=2.9e-19 Score=178.23 Aligned_cols=327 Identities=19% Similarity=0.249 Sum_probs=192.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC----CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCC
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~----~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 173 (475)
..+|+.+.. .++...+.-..+.+|+++|+.|++....+ ...-+.+.+|+|||++++- +...+- .
T Consensus 139 ~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala----------~ 206 (1518)
T COG4889 139 PIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA----------A 206 (1518)
T ss_pred CCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh----------h
Confidence 344554433 45666666667789999999999998865 2356678999999998854 333331 3
Q ss_pred ceEEEEeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHH-----------------------H--HHhhCCCCEEEE
Q 011908 174 PLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQ-----------------------M--RALDYGVDAVVG 227 (475)
Q Consensus 174 ~~~lil~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~-----------------------~--~~~~~~~~Ilv~ 227 (475)
.++|+++|+..|..|..+++..-.. ++....++++.+...- . .....+--|+++
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs 286 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS 286 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE
Confidence 5699999999999998887765332 3444444433221110 0 111224679999
Q ss_pred ccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCC-----CCCcEEEEeeecChhHHHHHHH------
Q 011908 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-----QNRQSMMFSATMPPWIRSLTNK------ 296 (475)
Q Consensus 228 T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~-----~~~~~l~~SAT~~~~~~~~~~~------ 296 (475)
|++.+...-.-....+..+++||+||+||-........=..-+.++. +....+.|||||.-........
T Consensus 287 TYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~ 366 (1518)
T COG4889 287 TYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSA 366 (1518)
T ss_pred cccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccc
Confidence 99998766655566688899999999999643221111111111111 1235789999973211111000
Q ss_pred ---------------------------hcCCCcEEEeecCCcccccCCeEEE------EEeccC-cchhhHHHHHHHhhc
Q 011908 297 ---------------------------YLKNPLTVDLVGDSDQKLADGISLY------SIATSM-YEKPSIIGQLITEHA 342 (475)
Q Consensus 297 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~k~~~l~~~~~~~~ 342 (475)
.+-+-.++.+.-+.. .....+... ....+. ..-......+.++..
T Consensus 367 ~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~-~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g 445 (1518)
T COG4889 367 ELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKE-VIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNG 445 (1518)
T ss_pred eeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechh-hhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcc
Confidence 011111111000000 000000000 000000 001112233333221
Q ss_pred -------------CCCcEEEEeCChHHHHHHHHHHHc--------------c--CCeeeecCCCCHHHHHHHHHH---Hh
Q 011908 343 -------------KGGKCIVFTQTKRDADRLAHAMAK--------------S--YNCEPLHGDISQSQRERTLSA---FR 390 (475)
Q Consensus 343 -------------~~~~~lVf~~~~~~~~~l~~~l~~--------------~--~~~~~lh~~~~~~~r~~~~~~---F~ 390 (475)
+..+.+-||.++++...+++.+.+ . +.+..+.|.|+..+|.+.++. |.
T Consensus 446 ~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~ 525 (1518)
T COG4889 446 EDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFE 525 (1518)
T ss_pred ccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCC
Confidence 113678899999988777766643 1 234556799999999655543 45
Q ss_pred cCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCC
Q 011908 391 DGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGK 437 (475)
Q Consensus 391 ~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~ 437 (475)
.++++||---.++++|||+|..+.||++++..+..+-+ .||+.|-..
T Consensus 526 ~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~ 574 (1518)
T COG4889 526 PNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAK 574 (1518)
T ss_pred cchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCc
Confidence 67899999999999999999999999999988877766 777777554
No 128
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.76 E-value=5.6e-18 Score=175.19 Aligned_cols=316 Identities=18% Similarity=0.285 Sum_probs=215.2
Q ss_pred CCCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
.+|+.||.+-++.++ +++++|+....|-|||+.- +..|..+....+. .|| .|++||...+ .-|.++|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~----~gp-flvvvplst~-~~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQI----HGP-FLVVVPLSTI-TAWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhc----cCC-eEEEeehhhh-HHHHHHHHH
Confidence 589999999988654 6789999999999999754 4444444442211 133 7999998775 458999999
Q ss_pred hCCCCceEEEEcCCChhHHHHHhh----C-----CCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHH
Q 011908 196 SAPSLDTICVYGGTPISHQMRALD----Y-----GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266 (475)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~~~----~-----~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~ 266 (475)
|. +++++++.|+...+...+.+. . ..+++++|++.++.--. .+.--...++++||||++-+. ...+
T Consensus 442 w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~~~l 516 (1373)
T KOG0384|consen 442 WT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--ESKL 516 (1373)
T ss_pred Hh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--HHHH
Confidence 99 899999999887666554442 1 27899999987754211 111224568999999998754 2233
Q ss_pred HHHHHhCCCCCcEEEEeeecChh-HHHHHH--H-----------------------------------------------
Q 011908 267 EVILERLPQNRQSMMFSATMPPW-IRSLTN--K----------------------------------------------- 296 (475)
Q Consensus 267 ~~il~~~~~~~~~l~~SAT~~~~-~~~~~~--~----------------------------------------------- 296 (475)
...+..+ ...+.+++|+||-.+ +..+.. +
T Consensus 517 ~~~l~~f-~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQF-KMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHh-cccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 3345555 345678889997321 111110 0
Q ss_pred ----------------------------------------------------hcCCCcEEEeecCCcccccCCeEE----
Q 011908 297 ----------------------------------------------------YLKNPLTVDLVGDSDQKLADGISL---- 320 (475)
Q Consensus 297 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~---- 320 (475)
..++|..+. + .+......+..
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~--g-aee~~~~~~~~~~~d 672 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIK--G-AEEKILGDFRDKMRD 672 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccC--c-HHHHHHHhhhhcchH
Confidence 000011000 0 00000000000
Q ss_pred --EEEeccCcchhhHHHHHHHhhc-CCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcC---C
Q 011908 321 --YSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG---R 393 (475)
Q Consensus 321 --~~~~~~~~~k~~~l~~~~~~~~-~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g---~ 393 (475)
.........|.-+|..++-++. .|+++|||..-+...+.++++|. ++++..-|.|.+..+.|++.+..|... .
T Consensus 673 ~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~Sdd 752 (1373)
T KOG0384|consen 673 EALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDD 752 (1373)
T ss_pred HHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCc
Confidence 0000011223334555554443 46899999999999999999994 679999999999999999999999864 4
Q ss_pred CcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCC--cEEEeeChhhhh
Q 011908 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSR--VLSEMLDADLLS 451 (475)
Q Consensus 394 ~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~--~~~~~~~~~~~~ 451 (475)
..+|+||.+..-|||+..++.|||||.++||-..+ .-|+-|.|++. .++-+++.+.++
T Consensus 753 FvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvE 814 (1373)
T KOG0384|consen 753 FVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVE 814 (1373)
T ss_pred eEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchH
Confidence 67999999999999999999999999999998888 77999999876 557888877664
No 129
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=1.8e-17 Score=158.68 Aligned_cols=429 Identities=12% Similarity=0.045 Sum_probs=259.2
Q ss_pred hhHHHhhhccchhhhhhhhhhcccchhhHhhhhhhhhhc---CCCCCCCcccccccCCccccccccccCCCCCCcchhh-
Q 011908 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKS---GPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAW- 77 (475)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~p~~~~~~~~~~~~~~~~~~~~~- 77 (475)
|..+|..|-+-+++.+|.+...-..+..++++.+..+.. .+.-....-...+.-|+.......+ .+|+.....
T Consensus 161 ~~~~~~~R~~L~~~~~~~~~~~~~~s~~~P~~E~~~~~~~~~~R~R~~~~~~~s~~~~K~~s~~~~~---~NY~N~~VI~ 237 (1034)
T KOG4150|consen 161 LAEVLKSRNCLTSPGSTKCLMSWDSSSSCPDWESLSRLAMSGVRVRIQDVKNLSVICPKVITDDYEA---VNYENAIVIA 237 (1034)
T ss_pred HHHHHhhhhhhcCCcchhheeecccccCCccHHHHHHHHhhcCceeecccchhhhhccccccccccc---ccccCceeee
Confidence 456788888899999999988877776666666555332 1111111122233333333222111 111111110
Q ss_pred ---hhhhhccccccc---cCCCCCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhH
Q 011908 78 ---QHAQSAVDDYVA---YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 78 ---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~ 151 (475)
+......+.+.. .-..-+....+|..+ +-+.+...+..+.-.....+|.++++.+.+|++..+.-.+.+||.+
T Consensus 238 ~~~~M~EKS~~~~~~~~K~~~~~~~R~A~~K~~-~~E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~ 316 (1034)
T KOG4150|consen 238 DYLEMDEKSGRKKIPLAKLFSAMKKREASFKSD-FWESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGT 316 (1034)
T ss_pred chHhHhhhcccccchHHHHHhhccchhhhhhhh-HHHHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCcc
Confidence 000000000000 000000001111111 1122223334444456789999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC---CC--ceEEEEcCCChhHHHHHhhCCCCEEE
Q 011908 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SL--DTICVYGGTPISHQMRALDYGVDAVV 226 (475)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~---~~--~~~~~~g~~~~~~~~~~~~~~~~Ilv 226 (475)
++..+....+.. ......+++.|+.++++...+.+.-... .. .++-.+.+.....+....+.+..+++
T Consensus 317 ~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~ 389 (1034)
T KOG4150|consen 317 CPTSGSRKFQTL-------CHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLY 389 (1034)
T ss_pred Ccccchhhhhhc-------CcccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceee
Confidence 999888877655 2244578899999998875444332211 11 12333445554555566667899999
Q ss_pred EccHHHHHHHHhCCC----CCCCccEEEEeccccccccCcHHHHHHHHHh----C-----CCCCcEEEEeeecChhHHHH
Q 011908 227 GTPGRVIDLIKRNAL----NLSEVQFVVLDEADQMLSVGFAEDVEVILER----L-----PQNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 227 ~T~~~l~~~l~~~~~----~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~----~-----~~~~~~l~~SAT~~~~~~~~ 293 (475)
+.|+.+......+.. .+-...++++||+|-+... |+......++. + ..+.|++-.+||....++..
T Consensus 390 s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~ 468 (1034)
T KOG4150|consen 390 SHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLR 468 (1034)
T ss_pred cCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHH
Confidence 999988765543322 2335678999999987654 44444333333 2 34678999999988766655
Q ss_pred HHHhcCCC-cEEEeecCCcccccCCeEEEEEec------cCcch---hhHHHHHH-HhhcCCCcEEEEeCChHHHHHHHH
Q 011908 294 TNKYLKNP-LTVDLVGDSDQKLADGISLYSIAT------SMYEK---PSIIGQLI-TEHAKGGKCIVFTQTKRDADRLAH 362 (475)
Q Consensus 294 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~k---~~~l~~~~-~~~~~~~~~lVf~~~~~~~~~l~~ 362 (475)
...+.-+. ..+...|.. ..-..+.+.. ...++ ..-...++ +-+..+-++|-||+++.-||.+..
T Consensus 469 ~~~~~~~E~~Li~~DGSP-----s~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~ 543 (1034)
T KOG4150|consen 469 SELANLSELELVTIDGSP-----SSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLC 543 (1034)
T ss_pred HHhcCCcceEEEEecCCC-----CccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHH
Confidence 44432222 222222211 1111111111 11112 22222222 234457799999999999987765
Q ss_pred HHHc-------c--CCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhc
Q 011908 363 AMAK-------S--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQ 431 (475)
Q Consensus 363 ~l~~-------~--~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR 431 (475)
...+ . -.+..+.|+...++|+++..++.-|+..-+|+|++++-|||+...+.|++.+.|.+...+. .||
T Consensus 544 ~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GR 623 (1034)
T KOG4150|consen 544 LTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGR 623 (1034)
T ss_pred HHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhcc
Confidence 5432 1 1355688999999999999999999999999999999999999999999999999987766 788
Q ss_pred cCCCCCCCcEEEeeCh
Q 011908 432 ISRPGKSRVLSEMLDA 447 (475)
Q Consensus 432 ~gR~g~~~~~~~~~~~ 447 (475)
+||..++..++.++..
T Consensus 624 AGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 624 AGRRNKPSLAVYVAFL 639 (1034)
T ss_pred ccccCCCceEEEEEec
Confidence 8888888877766654
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.76 E-value=5.5e-16 Score=164.71 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=59.6
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC--CCCEEEecC
Q 011908 342 AKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP--NVDLVELVV 419 (475)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip--~~~~vI~~~ 419 (475)
..+++++|+++|.+..+.+++.|...-......|... .+.+++++|++++..||++|..+.+|||+| +...||+..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 3478999999999999999999854312224445322 245689999999889999999999999997 466677766
Q ss_pred CC
Q 011908 420 LE 421 (475)
Q Consensus 420 ~~ 421 (475)
.|
T Consensus 723 LP 724 (820)
T PRK07246 723 LP 724 (820)
T ss_pred CC
Confidence 55
No 131
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.75 E-value=3.2e-17 Score=144.97 Aligned_cols=149 Identities=24% Similarity=0.240 Sum_probs=103.2
Q ss_pred CCcHHHHHHhhhhhc-------CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHH
Q 011908 121 KLFPIQKAVLEPAMQ-------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~-------~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l 193 (475)
+|+++|.+++..+.. .++.++.+|||||||.+++..+.... . ++++++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~-~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------R-KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------C-EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------c-ceeEecCHHHHHHHHHHHH
Confidence 689999999999884 57899999999999998875555544 1 6999999999999999999
Q ss_pred HHhCCCCceEEEE-------------cCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC-----------CCCCCccEE
Q 011908 194 HESAPSLDTICVY-------------GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-----------LNLSEVQFV 249 (475)
Q Consensus 194 ~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~-----------~~~~~l~~v 249 (475)
..+.......... ................++++.|.+.+........ ......+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 7766533222111 1111122223334458999999999987764321 223467899
Q ss_pred EEeccccccccCcHHH-HHHHHHhCCCCCcEEEEeeecC
Q 011908 250 VLDEADQMLSVGFAED-VEVILERLPQNRQSMMFSATMP 287 (475)
Q Consensus 250 IiDE~H~~~~~~~~~~-~~~il~~~~~~~~~l~~SAT~~ 287 (475)
|+||+|++.. .. +..++. .+...+++|||||.
T Consensus 151 I~DEaH~~~~----~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPS----DSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHH----HHHHHHHHH--SSCCEEEEEESS-S
T ss_pred EEehhhhcCC----HHHHHHHHc--CCCCeEEEEEeCcc
Confidence 9999999643 22 455555 46677999999975
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.74 E-value=2.8e-16 Score=161.44 Aligned_cols=273 Identities=18% Similarity=0.182 Sum_probs=172.1
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|. .+++.|.-. .+.-.+..+.++.||.|||+++.+|++-..+. |..|-|++++..||.+-++++..++
T Consensus 74 G~-r~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 74 GL-RHFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CC-CCCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 44 467777544 44445578999999999999999888644433 7779999999999999888777655
Q ss_pred C--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHH-HHHHhC------CCCCCCccEEEEeccccccccC-------
Q 011908 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRN------ALNLSEVQFVVLDEADQMLSVG------- 261 (475)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~l~~~------~~~~~~l~~vIiDE~H~~~~~~------- 261 (475)
. |+.+.+..++.+..++...+. ++|.+||...+- ++|+.. ......+.++||||+|.++-..
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiI 219 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLII 219 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceec
Confidence 4 788888888877766655554 799999987653 333322 1124568899999999854110
Q ss_pred ---------cHHHHHHHHHhCC----------------------------------------------------------
Q 011908 262 ---------FAEDVEVILERLP---------------------------------------------------------- 274 (475)
Q Consensus 262 ---------~~~~~~~il~~~~---------------------------------------------------------- 274 (475)
.......+...+.
T Consensus 220 Sg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~ 299 (870)
T CHL00122 220 SGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNV 299 (870)
T ss_pred cCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCC
Confidence 0111111111110
Q ss_pred ----------------------------------------------------------CCCcEEEEeeecChhHHHHHHH
Q 011908 275 ----------------------------------------------------------QNRQSMMFSATMPPWIRSLTNK 296 (475)
Q Consensus 275 ----------------------------------------------------------~~~~~l~~SAT~~~~~~~~~~~ 296 (475)
....+.+||+|.......+...
T Consensus 300 dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~i 379 (870)
T CHL00122 300 HYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKI 379 (870)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHH
Confidence 0125677777765543333333
Q ss_pred hcCCCcEEEeecCCcccccCCeEEEEEeccCcchh-hHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeec
Q 011908 297 YLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLH 374 (475)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh 374 (475)
| +..++.+..... ......+. .+..+..+|. .++..+.+.+..+.|+||.|.|++.+|.++..|. .+++..+++
T Consensus 380 Y--~l~vv~IPtnkp-~~R~d~~d-~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLN 455 (870)
T CHL00122 380 Y--NLEVVCIPTHRP-MLRKDLPD-LIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLN 455 (870)
T ss_pred h--CCCEEECCCCCC-ccceeCCC-eEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceee
Confidence 3 222332222111 11111111 1222333333 4566667777889999999999999999999995 468888999
Q ss_pred CCCCHHHH-HHHHHHHhcCC-CcEEEEecccccCCCCC
Q 011908 375 GDISQSQR-ERTLSAFRDGR-FNILIATDVAARGLDVP 410 (475)
Q Consensus 375 ~~~~~~~r-~~~~~~F~~g~-~~vLvaT~~l~~GiDip 410 (475)
++-...++ .+++.. .|+ -.|.|||++++||.||.
T Consensus 456 Ak~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 456 AKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 87422222 233332 454 46999999999999984
No 133
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.74 E-value=1.1e-16 Score=134.82 Aligned_cols=143 Identities=42% Similarity=0.586 Sum_probs=109.4
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQM 215 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~ 215 (475)
+++++.++||+|||.+++..+...... ....++++++|+..++.|+.+.+..... +..+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 368999999999999998887776643 2356799999999999999999988875 46666666666555544
Q ss_pred HHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
.......+|+++|++.+...+.........++++|+||+|.+....................+++++||||
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 44456689999999999888776655566789999999999876544443222344456778899999996
No 134
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.74 E-value=1.5e-15 Score=154.72 Aligned_cols=318 Identities=19% Similarity=0.209 Sum_probs=192.9
Q ss_pred CCcHHHHHHhhhhhcC---C-------cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHH
Q 011908 121 KLFPIQKAVLEPAMQG---R-------DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~---~-------~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 190 (475)
.++|+|++.+.-+.++ . .+++.-.+|+|||+.. ++.++.+++...... ..-.+.+|++|. .|...|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~-~~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAK-PLINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCcc-ccccccEEEccH-HHHHHHH
Confidence 5789999999866532 2 3788899999999876 556666555321110 012568999995 6789999
Q ss_pred HHHHHhCC--CCceEEEEcCCChhHH--HHHh-----hCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccC
Q 011908 191 KEFHESAP--SLDTICVYGGTPISHQ--MRAL-----DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261 (475)
Q Consensus 191 ~~l~~~~~--~~~~~~~~g~~~~~~~--~~~~-----~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~ 261 (475)
++|.+|.. .+....+++..+..+. ...+ .....|++-+.+.+...... +....++++|+||.|++-+.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch-
Confidence 99999986 4556666666653111 1111 11256778888887655443 23567899999999997664
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeeecChh----------------------------------------------------
Q 011908 262 FAEDVEVILERLPQNRQSMMFSATMPPW---------------------------------------------------- 289 (475)
Q Consensus 262 ~~~~~~~il~~~~~~~~~l~~SAT~~~~---------------------------------------------------- 289 (475)
...+...|..+ +-.+.|++|+||..+
T Consensus 392 -~s~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 33445556666 445688899996311
Q ss_pred HHHHHHHhc------------CCCcEEEeecC-C----------ccc----------cc---------------------
Q 011908 290 IRSLTNKYL------------KNPLTVDLVGD-S----------DQK----------LA--------------------- 315 (475)
Q Consensus 290 ~~~~~~~~~------------~~~~~~~~~~~-~----------~~~----------~~--------------------- 315 (475)
+..+...++ .......+.-. . ... ..
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 111111111 00000000000 0 000 00
Q ss_pred ---------------CCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEE---eCChHHHHHHHHHHH--ccCCeeeecC
Q 011908 316 ---------------DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVF---TQTKRDADRLAHAMA--KSYNCEPLHG 375 (475)
Q Consensus 316 ---------------~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf---~~~~~~~~~l~~~l~--~~~~~~~lh~ 375 (475)
..............+...|..++... ..++++| .....+...+.+.+. +++.+..+||
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~--~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI--REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH--hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 00000000001112333444554322 2233333 333444444444442 3789999999
Q ss_pred CCCHHHHHHHHHHHhcCC---CcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEE--eeChh
Q 011908 376 DISQSQRERTLSAFRDGR---FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSE--MLDAD 448 (475)
Q Consensus 376 ~~~~~~r~~~~~~F~~g~---~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~--~~~~~ 448 (475)
.|+..+|+.+++.|.+.. .-.|.+|.+.++|+++-+++.||++|.++||.... +.|+.|.|+...|+. ++..+
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 999999999999998754 33677788999999999999999999999998766 999999999876644 44443
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=4e-16 Score=159.36 Aligned_cols=312 Identities=17% Similarity=0.144 Sum_probs=197.8
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|. .+++.|.-.--.+.. ..+..+.||-|||+++.+|++-..+. |..|-|++...-||..=++++..++
T Consensus 76 G~-r~ydVQliGglvLh~--G~IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDL--GSVAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CC-CcCchHHHHHHHHhc--CCeeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhhHHHHHHHH
Confidence 44 577777555444444 46899999999999999888655544 6678899999999987666655544
Q ss_pred C--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHH-HHHHhCC------CCCCCccEEEEecccccccc--------
Q 011908 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQMLSV-------- 260 (475)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~l~~~~------~~~~~l~~vIiDE~H~~~~~-------- 260 (475)
. |+.+.+...+.....+...+ .++|.+||...|- ++|+... .....+.++||||+|.++-.
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLII 221 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLII 221 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccc
Confidence 3 78888877777766655555 4799999998773 4444321 12456889999999986411
Q ss_pred --------CcHHHHHHHHHhCCC---------------------------------------------------------
Q 011908 261 --------GFAEDVEVILERLPQ--------------------------------------------------------- 275 (475)
Q Consensus 261 --------~~~~~~~~il~~~~~--------------------------------------------------------- 275 (475)
.....+..+...+..
T Consensus 222 Sg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~ 301 (925)
T PRK12903 222 SGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDV 301 (925)
T ss_pred cCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 011111122221100
Q ss_pred -----------------------------------------------------------CCcEEEEeeecChhHHHHHHH
Q 011908 276 -----------------------------------------------------------NRQSMMFSATMPPWIRSLTNK 296 (475)
Q Consensus 276 -----------------------------------------------------------~~~~l~~SAT~~~~~~~~~~~ 296 (475)
..++.+||+|.......+...
T Consensus 302 dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~i 381 (925)
T PRK12903 302 EYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDI 381 (925)
T ss_pred ceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHH
Confidence 014556666654433333333
Q ss_pred hcCCCcEEEeecCCcccccCCeEEEEEeccCcchhh-HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeec
Q 011908 297 YLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLH 374 (475)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh 374 (475)
| +..++.+...... .....+. .+..+..+|.. ++..+.+.+..+.|+||.|.|++.++.++..|.+ +++..+++
T Consensus 382 Y--~l~Vv~IPTnkP~-~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 382 Y--NMRVNVVPTNKPV-IRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred h--CCCEEECCCCCCe-eeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 3 2222222111110 0000111 12223333433 4455555677899999999999999999999964 68888888
Q ss_pred CCCCHHHHHHHHHHHhcCC-CcEEEEecccccCCCCCCCC--------EEEecCCCCCh--hHHHhhccCCCCCCCcEEE
Q 011908 375 GDISQSQRERTLSAFRDGR-FNILIATDVAARGLDVPNVD--------LVELVVLERKE--VQFLSTQISRPGKSRVLSE 443 (475)
Q Consensus 375 ~~~~~~~r~~~~~~F~~g~-~~vLvaT~~l~~GiDip~~~--------~vI~~~~~~~~--~~~~~gR~gR~g~~~~~~~ 443 (475)
++.. +++..+-. ..|+ -.|.|||+++.+|.||.--. +||....+.|. ..|+.||+||-|.+|.+-+
T Consensus 458 Ak~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 458 AKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 8744 33322222 4564 56999999999999996322 77776666554 5566999999999999988
Q ss_pred eeChhhh
Q 011908 444 MLDADLL 450 (475)
Q Consensus 444 ~~~~~~~ 450 (475)
+++-+|.
T Consensus 535 ~lSLeD~ 541 (925)
T PRK12903 535 FISLDDQ 541 (925)
T ss_pred EEecchH
Confidence 8887655
No 136
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.69 E-value=2.4e-14 Score=155.10 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=63.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHccCC---eeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC--CCEEEe
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAKSYN---CEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN--VDLVEL 417 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~~~~---~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~--~~~vI~ 417 (475)
.+++++|+++|.+..+.+++.|..... ...+.-+++...|.++++.|++++-.||++|..+.+|||+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 467999999999999999999964322 233333444456788999999998899999999999999996 588988
Q ss_pred cCCCC
Q 011908 418 VVLER 422 (475)
Q Consensus 418 ~~~~~ 422 (475)
...|.
T Consensus 831 ~kLPF 835 (928)
T PRK08074 831 VRLPF 835 (928)
T ss_pred ecCCC
Confidence 77664
No 137
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.68 E-value=3.6e-15 Score=154.22 Aligned_cols=322 Identities=19% Similarity=0.231 Sum_probs=211.2
Q ss_pred CCcHHHHHHhhhhhc----CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.|+.||++-++++.- +-+.|++.+.|-|||+..+-.+.....+.......-.....||+||+ .|+--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 578999999988642 23789999999999997754444433332111112234448999995 6889999999999
Q ss_pred CCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCC
Q 011908 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~ 276 (475)
++-+++....|+...+...+...+.++|+|++++.+.+-+.. +.-....|+|+||.|-+-+. ...+.+..+.+. .
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~-a 1128 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR-A 1128 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh-h
Confidence 998888887887766666555555689999999988643321 00123557999999987653 334444455553 3
Q ss_pred CcEEEEeeecChh-HH-------------------------------------------------------------HHH
Q 011908 277 RQSMMFSATMPPW-IR-------------------------------------------------------------SLT 294 (475)
Q Consensus 277 ~~~l~~SAT~~~~-~~-------------------------------------------------------------~~~ 294 (475)
.+.+.+|+||..+ +. .+.
T Consensus 1129 ~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlK 1208 (1549)
T KOG0392|consen 1129 NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLK 1208 (1549)
T ss_pred cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4578899997411 00 000
Q ss_pred HHhcCC--CcEE----------------------------EeecCCcccccC----------------CeEEEEEe----
Q 011908 295 NKYLKN--PLTV----------------------------DLVGDSDQKLAD----------------GISLYSIA---- 324 (475)
Q Consensus 295 ~~~~~~--~~~~----------------------------~~~~~~~~~~~~----------------~~~~~~~~---- 324 (475)
...+.+ |..| .+.+.. ..... ..+-....
T Consensus 1209 edVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~-~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp 1287 (1549)
T KOG0392|consen 1209 EDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGE-ESLGTDKTHVFQALQYLRKLCNHPALVLTPVHP 1287 (1549)
T ss_pred HHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccch-hccCcchHHHHHHHHHHHHhcCCcceeeCCCcc
Confidence 000000 0000 000000 00000 00000000
Q ss_pred ------------------ccCcchhhHHHHHHHhhc---------------CCCcEEEEeCChHHHHHHHHHHHcc----
Q 011908 325 ------------------TSMYEKPSIIGQLITEHA---------------KGGKCIVFTQTKRDADRLAHAMAKS---- 367 (475)
Q Consensus 325 ------------------~~~~~k~~~l~~~~~~~~---------------~~~~~lVf~~~~~~~~~l~~~l~~~---- 367 (475)
....-|..++.+++.+.. .+++++|||.-+...+.+.+-|.+.
T Consensus 1288 ~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mps 1367 (1549)
T KOG0392|consen 1288 DLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPS 1367 (1549)
T ss_pred hHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCc
Confidence 012236667777776542 2468999999999999998887442
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcC-CCcEEEEe-cccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCC--cE
Q 011908 368 YNCEPLHGDISQSQRERTLSAFRDG-RFNILIAT-DVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSR--VL 441 (475)
Q Consensus 368 ~~~~~lh~~~~~~~r~~~~~~F~~g-~~~vLvaT-~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~--~~ 441 (475)
.....+.|..++.+|.++.++|.++ .++||+-| -+...|+|+.+++.||+++.++||-..+ +-||-|.|++. .+
T Consensus 1368 VtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNV 1447 (1549)
T KOG0392|consen 1368 VTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNV 1447 (1549)
T ss_pred eeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeee
Confidence 2344789999999999999999998 57776655 6888999999999999999999998877 88999999865 34
Q ss_pred EEeeChhh
Q 011908 442 SEMLDADL 449 (475)
Q Consensus 442 ~~~~~~~~ 449 (475)
+-+++..-
T Consensus 1448 yRlItrGT 1455 (1549)
T KOG0392|consen 1448 YRLITRGT 1455 (1549)
T ss_pred eeehhccc
Confidence 55666543
No 138
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.68 E-value=1.4e-15 Score=151.31 Aligned_cols=319 Identities=18% Similarity=0.272 Sum_probs=209.4
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
+|-+||.--++++. ++.+.|+..+.|-|||..+ ++.+..+.+.+ ..|| -|||||...| +.|.++|.+|
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g-----~~gp-HLVVvPsSTl-eNWlrEf~kw 470 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIG-----NPGP-HLVVVPSSTL-ENWLREFAKW 470 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcC-----CCCC-cEEEecchhH-HHHHHHHHHh
Confidence 58899999988764 4567899999999999544 66666665422 1244 5999999886 6699999999
Q ss_pred CCCCceEEEEcCCChhHHHHHhh----CCCCEEEEccHHHHHHH-HhCCCCCCCccEEEEeccccccccCcHHHHHHHHH
Q 011908 197 APSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLI-KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271 (475)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~l-~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~ 271 (475)
+|.+.+...+|+...+.+.+..- .+.+|+++|+.....-- .+..+.-.++.++|+||.|.+-+. ....++.++.
T Consensus 471 CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~-~SeRy~~LM~ 549 (941)
T KOG0389|consen 471 CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNR-TSERYKHLMS 549 (941)
T ss_pred CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhcc-chHHHHHhcc
Confidence 99999999999876555443322 24899999987653111 111112346788999999987665 3444454443
Q ss_pred hCCCCCcEEEEeeecChh-HH----------------------------------------------------------H
Q 011908 272 RLPQNRQSMMFSATMPPW-IR----------------------------------------------------------S 292 (475)
Q Consensus 272 ~~~~~~~~l~~SAT~~~~-~~----------------------------------------------------------~ 292 (475)
+ +....+++|+||-.+ +. .
T Consensus 550 -I-~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 -I-NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred -c-cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3 245688999996211 00 0
Q ss_pred HHHHhcC----CCcEEEeecCCc----------------------c-cccCC----------------------------
Q 011908 293 LTNKYLK----NPLTVDLVGDSD----------------------Q-KLADG---------------------------- 317 (475)
Q Consensus 293 ~~~~~~~----~~~~~~~~~~~~----------------------~-~~~~~---------------------------- 317 (475)
.....+. ....+....... . .....
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 0000000 000110000000 0 00000
Q ss_pred ---------------------------------------eEEE---EEeccCcchhhHHHHHHHhh-cCCCcEEEEeCCh
Q 011908 318 ---------------------------------------ISLY---SIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTK 354 (475)
Q Consensus 318 ---------------------------------------~~~~---~~~~~~~~k~~~l~~~~~~~-~~~~~~lVf~~~~ 354 (475)
+..+ .-.+-...|...|..++... .+|.++++|..--
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 0000 00001122555666666554 3468999998877
Q ss_pred HHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCC--CcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--h
Q 011908 355 RDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR--FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--S 429 (475)
Q Consensus 355 ~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~--~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~ 429 (475)
...+.+...|. .++....+.|...-.+|+.++..|...+ .-+|++|.+...||++..+++||++|...+|-... -
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 77777777774 3688889999999999999999998765 35799999999999999999999999999987666 7
Q ss_pred hccCCCCCCC--cEEEeeChhhh
Q 011908 430 TQISRPGKSR--VLSEMLDADLL 450 (475)
Q Consensus 430 gR~gR~g~~~--~~~~~~~~~~~ 450 (475)
-|+-|+|+.. .++.+++.+-.
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcH
Confidence 7999999865 55667776544
No 139
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=5.1e-16 Score=148.82 Aligned_cols=262 Identities=18% Similarity=0.223 Sum_probs=164.9
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (475)
++-+|||.||||. .+++.+.. ....++.-|.+.||.++++++++. ++...+++|........+
T Consensus 194 i~H~GPTNSGKTy----~ALqrl~~---------aksGvycGPLrLLA~EV~~r~na~--gipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTY----RALQRLKS---------AKSGVYCGPLRLLAHEVYDRLNAL--GIPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred EEEeCCCCCchhH----HHHHHHhh---------hccceecchHHHHHHHHHHHhhhc--CCCccccccceeeecCCC--
Confidence 6779999999996 44555533 455899999999999999999998 566666666443211100
Q ss_pred hCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHH-HHhCCCCCcEEEEeeecChhHHHHHHHh
Q 011908 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI-LERLPQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~i-l~~~~~~~~~l~~SAT~~~~~~~~~~~~ 297 (475)
...+..+-||-++.. + -..+++.||||.+.|.+.+.|-.+... |.......++.+ - |.+..+....
T Consensus 257 ~~~a~hvScTVEM~s-------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG---e--psvldlV~~i 323 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVS-------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG---E--PSVLDLVRKI 323 (700)
T ss_pred CCcccceEEEEEEee-------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---C--chHHHHHHHH
Confidence 112566666644321 1 235789999999999888776655544 333333333332 1 2223333333
Q ss_pred cC---CCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc--cCCeee
Q 011908 298 LK---NPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--SYNCEP 372 (475)
Q Consensus 298 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~--~~~~~~ 372 (475)
+. +...+.. |....+.. -.+.+..-+..+.+| .++ +|-|+++...+...+.+ ..++.+
T Consensus 324 ~k~TGd~vev~~--------------YeRl~pL~-v~~~~~~sl~nlk~G-DCv-V~FSkk~I~~~k~kIE~~g~~k~aV 386 (700)
T KOG0953|consen 324 LKMTGDDVEVRE--------------YERLSPLV-VEETALGSLSNLKPG-DCV-VAFSKKDIFTVKKKIEKAGNHKCAV 386 (700)
T ss_pred HhhcCCeeEEEe--------------ecccCcce-ehhhhhhhhccCCCC-CeE-EEeehhhHHHHHHHHHHhcCcceEE
Confidence 22 1111111 10000000 011122223344344 333 36678888888888854 356999
Q ss_pred ecCCCCHHHHHHHHHHHhc--CCCcEEEEecccccCCCCCCCCEEEecCCCCC-----------hhHHHhhccCCCCC--
Q 011908 373 LHGDISQSQRERTLSAFRD--GRFNILIATDVAARGLDVPNVDLVELVVLERK-----------EVQFLSTQISRPGK-- 437 (475)
Q Consensus 373 lh~~~~~~~r~~~~~~F~~--g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~-----------~~~~~~gR~gR~g~-- 437 (475)
++|.++++.|.+.-..|.+ ++++|||||+++.+|+|+ +++.||+++.-.. ...|+.||+||.|.
T Consensus 387 IYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 387 IYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 9999999999999999988 899999999999999999 9999999876532 22333788888774
Q ss_pred -CCcEEEeeChh
Q 011908 438 -SRVLSEMLDAD 448 (475)
Q Consensus 438 -~~~~~~~~~~~ 448 (475)
.|.+.++..+|
T Consensus 466 ~~G~vTtl~~eD 477 (700)
T KOG0953|consen 466 PQGEVTTLHSED 477 (700)
T ss_pred cCceEEEeeHhh
Confidence 35555555544
No 140
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.67 E-value=5.8e-14 Score=143.01 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=61.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHccCC-eeeecCCCCHHHHHHHHHHHhc----CCCcEEEEecccccCCCC--------
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAKSYN-CEPLHGDISQSQRERTLSAFRD----GRFNILIATDVAARGLDV-------- 409 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~~~~-~~~lh~~~~~~~r~~~~~~F~~----g~~~vLvaT~~l~~GiDi-------- 409 (475)
.+++++|.+.|....+.+++.+...+. ...+.|..+ .+...+++|++ |...||++|..+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 467999999999999999999976543 344555432 35667888887 478999999999999999
Q ss_pred --CCCCEEEecCCC
Q 011908 410 --PNVDLVELVVLE 421 (475)
Q Consensus 410 --p~~~~vI~~~~~ 421 (475)
..+++||+...|
T Consensus 547 ~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 547 KDNLLTDLIITCAP 560 (636)
T ss_pred CCCcccEEEEEeCC
Confidence 259999998777
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=1.1e-14 Score=149.49 Aligned_cols=125 Identities=18% Similarity=0.259 Sum_probs=92.1
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-- 198 (475)
.+++.| .+..+.-.+..+..+.||-|||+++.+|++-..+. |..+-|++++.-||..=++++..++.
T Consensus 85 r~ydVQ--liGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 85 RHFDVQ--LIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CcchhH--HHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 466666 44444445568999999999999999888876654 77799999999999987777666543
Q ss_pred CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHh------CCCCCCCccEEEEecccccc
Q 011908 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKR------NALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~------~~~~~~~l~~vIiDE~H~~~ 258 (475)
|+.+.+..++.+...+...+ .++|++||+..+ .++|+. .......+.++||||+|.++
T Consensus 154 GLtvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 154 GLSVGLIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CCeEEEECCCCChHHHHHhc--CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 78888887777665554443 589999999877 233322 12234678899999999864
No 142
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.66 E-value=1.8e-15 Score=125.82 Aligned_cols=115 Identities=38% Similarity=0.575 Sum_probs=101.3
Q ss_pred chhhHHHHHHHhhc-CCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q 011908 329 EKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 329 ~k~~~l~~~~~~~~-~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~G 406 (475)
.|...+..++.... .++++||||++.+.++.+++.|.+ ...+..+||+++..+|..+++.|.+|...+|++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 56666777776553 578999999999999999999965 6789999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEE
Q 011908 407 LDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSE 443 (475)
Q Consensus 407 iDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~ 443 (475)
+|+|++++||+++.+++...+. .||++|.|+.|.+.+
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 9999999999999999988877 788888877666654
No 143
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.66 E-value=2.2e-14 Score=147.95 Aligned_cols=281 Identities=11% Similarity=0.063 Sum_probs=167.9
Q ss_pred EEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH---
Q 011908 141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA--- 217 (475)
Q Consensus 141 i~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~--- 217 (475)
..+.+|||||.+|+-.+-..+.. |.++|+++|...|..|+.+.|++.|++..+..++++.+..++.+.
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHH
Confidence 34446999999998877777733 889999999999999999999999975678888888776655332
Q ss_pred -hhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc--c-C---cHHHHHHHHHhCCCCCcEEEEeeecChhH
Q 011908 218 -LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS--V-G---FAEDVEVILERLPQNRQSMMFSATMPPWI 290 (475)
Q Consensus 218 -~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~--~-~---~~~~~~~il~~~~~~~~~l~~SAT~~~~~ 290 (475)
......|+|||-..+ ...+.++++||+||-|.-.- . . ...++.. ++....+..+++.||||.-+.
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~-~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVAL-LRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHH-HHHHHcCCcEEEECCCCCHHH
Confidence 233489999992211 23578999999999995331 1 1 1222322 333336778999999977554
Q ss_pred HHHHHHhcCCCcEEEeecCCcccccCCeEEEEEec-----cC-c----chhhHHHHHHHhhcCCCcEEEEeCChHHH---
Q 011908 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-----SM-Y----EKPSIIGQLITEHAKGGKCIVFTQTKRDA--- 357 (475)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~----~k~~~l~~~~~~~~~~~~~lVf~~~~~~~--- 357 (475)
........... +.............+....... +. . --...+..+.+.+.++ ++|||.|.+..+
T Consensus 308 ~~~~~~g~~~~--~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l 384 (665)
T PRK14873 308 QALVESGWAHD--LVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSL 384 (665)
T ss_pred HHHHhcCccee--eccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCee
Confidence 43332211110 1000000000111111111100 00 0 0123555555666667 999998875422
Q ss_pred --------------------------------------------------------HHHHHHHHccC---CeeeecCCCC
Q 011908 358 --------------------------------------------------------DRLAHAMAKSY---NCEPLHGDIS 378 (475)
Q Consensus 358 --------------------------------------------------------~~l~~~l~~~~---~~~~lh~~~~ 378 (475)
+++.+.|++.+ ++..+.
T Consensus 385 ~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d---- 460 (665)
T PRK14873 385 ACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG---- 460 (665)
T ss_pred EhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC----
Confidence 45555554433 222222
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCC--------h-hHH--H---hhccCCCCCCCcEEEe
Q 011908 379 QSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERK--------E-VQF--L---STQISRPGKSRVLSEM 444 (475)
Q Consensus 379 ~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~--------~-~~~--~---~gR~gR~g~~~~~~~~ 444 (475)
+..+++.|. ++.+|||+|+.++.=+. ++++.|+++|++.. . ..| + .||+||..++|.+++.
T Consensus 461 ---~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 461 ---GDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred ---hHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 234788886 58999999993222222 47788887766421 1 111 1 7888888888988887
Q ss_pred eChhhh
Q 011908 445 LDADLL 450 (475)
Q Consensus 445 ~~~~~~ 450 (475)
..+++.
T Consensus 536 ~~p~~~ 541 (665)
T PRK14873 536 AESSLP 541 (665)
T ss_pred eCCCCH
Confidence 766643
No 144
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.63 E-value=1.4e-13 Score=130.52 Aligned_cols=316 Identities=16% Similarity=0.197 Sum_probs=201.1
Q ss_pred CCCCcHHHHHHhhhh-hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 119 ISKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i-~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
+..|.|+|++-+... ..|..+++..+.|-|||+.++. +.....+ ....+|+||. .+-..|.+.+..|+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyra---------EwplliVcPA-svrftWa~al~r~l 264 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRA---------EWPLLIVCPA-SVRFTWAKALNRFL 264 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhh---------cCcEEEEecH-HHhHHHHHHHHHhc
Confidence 345779999988764 4667899999999999998844 3333322 3347999995 55688999999999
Q ss_pred CCCce-EEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCC
Q 011908 198 PSLDT-ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 198 ~~~~~-~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~ 276 (475)
+.+.. .++.++.+.-. .+.....|.|.+++.+.++-.. +.-..++++|+||.|.+-+. -....+.++..+..-
T Consensus 265 ps~~pi~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 265 PSIHPIFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVA 338 (689)
T ss_pred ccccceEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhcc-chhhhhhhhhHHHHh
Confidence 85543 33444333111 1112247889999988665332 12334788999999987665 344466666666667
Q ss_pred CcEEEEeeecC-------------------hhHHHHHHHhcCCCc---EEEeecCCc----------------------c
Q 011908 277 RQSMMFSATMP-------------------PWIRSLTNKYLKNPL---TVDLVGDSD----------------------Q 312 (475)
Q Consensus 277 ~~~l~~SAT~~-------------------~~~~~~~~~~~~~~~---~~~~~~~~~----------------------~ 312 (475)
.++|++|+||. |+...+...|..... .....|... .
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999972 112222223321110 000000000 0
Q ss_pred cccCCeEEEEEecc-------------------------------------CcchhhHHHHHHHh-----hcCCCcEEEE
Q 011908 313 KLADGISLYSIATS-------------------------------------MYEKPSIIGQLITE-----HAKGGKCIVF 350 (475)
Q Consensus 313 ~~~~~~~~~~~~~~-------------------------------------~~~k~~~l~~~~~~-----~~~~~~~lVf 350 (475)
..+.......+... ...|...+.+.+.. ...+.+.+||
T Consensus 419 qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 419 QLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred hCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 00000001111100 01122222222222 2346789999
Q ss_pred eCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCC-Cc-EEEEecccccCCCCCCCCEEEecCCCCChhHH
Q 011908 351 TQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR-FN-ILIATDVAARGLDVPNVDLVELVVLERKEVQF 427 (475)
Q Consensus 351 ~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~-~~-vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~ 427 (475)
|......+.+...+. +++....+.|..++.+|....+.|...+ .+ -+++.++..+|+++..++.||+...++++.-.
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvL 578 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVL 578 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceE
Confidence 999999999999985 4688899999999999999999998654 33 35666888999999999999999999998777
Q ss_pred H--hhccCCCCCCCcE--EEeeChhhhh
Q 011908 428 L--STQISRPGKSRVL--SEMLDADLLS 451 (475)
Q Consensus 428 ~--~gR~gR~g~~~~~--~~~~~~~~~~ 451 (475)
+ --|+-|.|++..+ ++++-.+-.+
T Consensus 579 lQAEDRaHRiGQkssV~v~ylvAKgT~D 606 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSVFVQYLVAKGTAD 606 (689)
T ss_pred EechhhhhhccccceeeEEEEEecCchH
Confidence 6 6788899987644 3444444443
No 145
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.58 E-value=6.4e-15 Score=110.41 Aligned_cols=73 Identities=30% Similarity=0.564 Sum_probs=66.8
Q ss_pred ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccCCCCCCC
Q 011908 366 KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKSR 439 (475)
Q Consensus 366 ~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g~~~ 439 (475)
.++.+..+||+++..+|..+++.|.+|+.+|||||+++++|+|+|++++||++++|++...+. |+.||+||.|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~-Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYI-QRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHH-HHHTTSSTTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHH-HHhhcCCCCC
Confidence 368999999999999999999999999999999999999999999999999999999999988 6666666544
No 146
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.55 E-value=7.1e-12 Score=131.80 Aligned_cols=77 Identities=22% Similarity=0.385 Sum_probs=59.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHccC-CeeeecCCCCHHHHHHHHHHHh----cCCCcEEEEecccccCCCCCC--CCEE
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAKSY-NCEPLHGDISQSQRERTLSAFR----DGRFNILIATDVAARGLDVPN--VDLV 415 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~~~-~~~~lh~~~~~~~r~~~~~~F~----~g~~~vLvaT~~l~~GiDip~--~~~v 415 (475)
.++.++|+++|.+..+.++..+.... .....+|. ..+.++++.|+ +|+..||++|..+.+|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 35568999999999999999986432 23344564 24677887776 467789999999999999986 7999
Q ss_pred EecCCCC
Q 011908 416 ELVVLER 422 (475)
Q Consensus 416 I~~~~~~ 422 (475)
|+...|.
T Consensus 610 II~kLPF 616 (697)
T PRK11747 610 IITKIPF 616 (697)
T ss_pred EEEcCCC
Confidence 9877664
No 147
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=1.2e-13 Score=143.50 Aligned_cols=312 Identities=17% Similarity=0.226 Sum_probs=202.4
Q ss_pred CcHHHHHHhhhhhcC-CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--
Q 011908 122 LFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-- 198 (475)
..++|.++++.+.+. .++++.+|+|||||.|+-++++.. .+..++++++|..+.+...++.+.+.+.
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~----------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP----------DTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC----------ccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 467888888887755 469999999999999998887761 3456799999999999888777766554
Q ss_pred -CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHH------HHHHHHH
Q 011908 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE------DVEVILE 271 (475)
Q Consensus 199 -~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~------~~~~il~ 271 (475)
|..+..++|......+ .+. ..+|+|+||+++..+ . ...++++.|.||.|.+.+. ++. .++.+-.
T Consensus 1214 ~G~~~~~l~ge~s~~lk--l~~-~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLK--LLQ-KGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccchH--Hhh-hcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHH
Confidence 5555555555443332 222 259999999999655 2 4678899999999987743 221 2677777
Q ss_pred hCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcc------hhhHHHHHHHhhcCCC
Q 011908 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYE------KPSIIGQLITEHAKGG 345 (475)
Q Consensus 272 ~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------k~~~l~~~~~~~~~~~ 345 (475)
++.++.+++.+|..+.+. +++ .+........+.. .....+..+....+.....+ -...+..+.+....+.
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p-~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k 1360 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSP-SVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRK 1360 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhh--ccccccceeecCc-ccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCC
Confidence 777888899998886652 222 1111112222211 12222222333322222211 1223445555556788
Q ss_pred cEEEEeCChHHHHHHHHHH-----------------------HccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 011908 346 KCIVFTQTKRDADRLAHAM-----------------------AKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (475)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~l-----------------------~~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~ 402 (475)
+.+||+|+++++..++.-+ ++.++.++=|.++++.+..-+-.-|..|.++|+|...-
T Consensus 1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred CeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 9999999999887665432 11234444599999999999999999999999999877
Q ss_pred cccCCCCCCCCEEEecC-----CCCC-----hhHHHhhccCCCCCCCcEEEeeChhhhhhcCCCch
Q 011908 403 AARGLDVPNVDLVELVV-----LERK-----EVQFLSTQISRPGKSRVLSEMLDADLLSSQGSPLK 458 (475)
Q Consensus 403 l~~GiDip~~~~vI~~~-----~~~~-----~~~~~~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~ 458 (475)
..|+-. .++.||.++ -... +..-+.|..|++.+.|+|++++...+...+++.+.
T Consensus 1441 -~~~~~~-~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1441 -CYGTKL-KAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred -cccccc-cceEEEEecceeecccccccccCchhHHHHHhhhhcCCccEEEEecCchHHHHHHhcc
Confidence 778776 444555432 1111 11112456666666899999998877755554443
No 148
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.54 E-value=2.9e-12 Score=124.29 Aligned_cols=279 Identities=20% Similarity=0.208 Sum_probs=188.5
Q ss_pred CCceEEEEeCCHHhHHHHHHHHHHhCCCC-ceE------EEEc---------------CCChhHHHHHhh----------
Q 011908 172 RNPLCLVLAPTRELAKQVEKEFHESAPSL-DTI------CVYG---------------GTPISHQMRALD---------- 219 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~l~~~~~~~-~~~------~~~g---------------~~~~~~~~~~~~---------- 219 (475)
..|+|||++|++..|.++.+.+.++.+.- .+. --+| +...........
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 47899999999999999998887776531 100 0001 001111111111
Q ss_pred --------------CCCCEEEEccHHHHHHHHh------CCCCCCCccEEEEeccccccccCcHHHHHHHHHhCC---C-
Q 011908 220 --------------YGVDAVVGTPGRVIDLIKR------NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP---Q- 275 (475)
Q Consensus 220 --------------~~~~Ilv~T~~~l~~~l~~------~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~---~- 275 (475)
..+||||++|=-|...+.. ..-.++++.++|+|.+|.+. ++...++..++..++ +
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCC
Confidence 1379999999999887764 23357889999999999654 334555666655552 2
Q ss_pred --------------------CCcEEEEeeecChhHHHHHHHhcCCCc-EEEeecCCc-----ccccCCeEEEEEecc---
Q 011908 276 --------------------NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSD-----QKLADGISLYSIATS--- 326 (475)
Q Consensus 276 --------------------~~~~l~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~--- 326 (475)
-+|++++|+...|++..+.+..+.+.. .+.+..... ..+...+.+.....+
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 259999999999999999888554322 222211111 112222222222111
Q ss_pred ----Ccchhh-----HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcE
Q 011908 327 ----MYEKPS-----IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (475)
Q Consensus 327 ----~~~k~~-----~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~v 396 (475)
.+.+.+ ++..+.+ ....+++|||+||.-+--++.++|++ +.....+|...+..+..+.-..|..|+.++
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 111222 2222322 22467899999999999999999964 688999999999999999999999999999
Q ss_pred EEEecccc--cCCCCCCCCEEEecCCCCChhHHH--hhccCCCC------CCCcEEEeeChhhhhh
Q 011908 397 LIATDVAA--RGLDVPNVDLVELVVLERKEVQFL--STQISRPG------KSRVLSEMLDADLLSS 452 (475)
Q Consensus 397 LvaT~~l~--~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g------~~~~~~~~~~~~~~~~ 452 (475)
|+.|.-+. +-..+.++++||+|.+|.++..|. ....+... ....|.++++.-|...
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 99998766 788899999999999999999887 33222222 2478888998877653
No 149
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.50 E-value=1.7e-12 Score=135.69 Aligned_cols=88 Identities=15% Similarity=0.067 Sum_probs=62.1
Q ss_pred EEEEeCChHHHHHHHHHHHc-------cCCeeeecCCCCHHHHHHHHHHH----------------------hc----CC
Q 011908 347 CIVFTQTKRDADRLAHAMAK-------SYNCEPLHGDISQSQRERTLSAF----------------------RD----GR 393 (475)
Q Consensus 347 ~lVf~~~~~~~~~l~~~l~~-------~~~~~~lh~~~~~~~r~~~~~~F----------------------~~----g~ 393 (475)
.+|-.++++.+-.++..|.. .+.+.++|+..+...|..+++.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 46667778888888877743 23477889999888887766553 12 46
Q ss_pred CcEEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccCCCCCC
Q 011908 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438 (475)
Q Consensus 394 ~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g~~ 438 (475)
..|+|+|+++|.|+|+ +.+.+|..-+|. .-++||+||..|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~~~~~~---~sliQ~aGR~~R~ 879 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIADPSSM---RSIIQLAGRVNRH 879 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeeeccCcH---HHHHHHhhccccc
Confidence 7899999999999999 888887654443 3334555555543
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.50 E-value=6.4e-12 Score=133.00 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=60.0
Q ss_pred CCcEEEEeCChHHHHHHHHHHHccCC--eeeecCCCCHHHHHHHHHHHhcCCC-cEEEEecccccCCCCCC--CCEEEec
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAKSYN--CEPLHGDISQSQRERTLSAFRDGRF-NILIATDVAARGLDVPN--VDLVELV 418 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~~~~--~~~lh~~~~~~~r~~~~~~F~~g~~-~vLvaT~~l~~GiDip~--~~~vI~~ 418 (475)
+++++||++|.+.++.+.+.+..... ....+|..+ +...++.|.++.- -++|+|..+.+|||+|+ ...||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 55899999999999999999976432 345555544 4478888877655 89999999999999985 5788887
Q ss_pred CCCC
Q 011908 419 VLER 422 (475)
Q Consensus 419 ~~~~ 422 (475)
..|.
T Consensus 556 ~lPf 559 (654)
T COG1199 556 GLPF 559 (654)
T ss_pred ecCC
Confidence 7764
No 151
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.46 E-value=5.1e-13 Score=136.45 Aligned_cols=310 Identities=19% Similarity=0.258 Sum_probs=200.7
Q ss_pred CCcHHHHHHhhhhhc---C-CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 121 KLFPIQKAVLEPAMQ---G-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~---~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
++.+||.+.+.+... + -+.++...+|-|||..- ++++..+.+... ..|| -+|+||+..|.. |..+|..|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~----~~GP-~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQ----MQGP-FLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcc----cCCC-eEEeccccccCC-chhhcccc
Confidence 688999999887542 2 36899999999999654 555555554321 2244 699999999865 89999999
Q ss_pred CCCCceEEEEcCCChhHHH--HHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCC
Q 011908 197 APSLDTICVYGGTPISHQM--RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (475)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~--~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~ 274 (475)
.+.+..+...|........ .......+|+++|++.+.. .+..+.--+..++||||.|+|.+. .-.+...+....
T Consensus 467 aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y 542 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHY 542 (1157)
T ss_pred ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhccc
Confidence 9988888777665433321 2222348999999887754 111111224568999999998653 222223333233
Q ss_pred CCCcEEEEeeecChh---------------H------------------------------------HHHHHHhcC----
Q 011908 275 QNRQSMMFSATMPPW---------------I------------------------------------RSLTNKYLK---- 299 (475)
Q Consensus 275 ~~~~~l~~SAT~~~~---------------~------------------------------------~~~~~~~~~---- 299 (475)
...+.+++|+||..+ + ...++-++-
T Consensus 543 ~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlK 622 (1157)
T KOG0386|consen 543 RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLK 622 (1157)
T ss_pred cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhh
Confidence 344566777775210 0 000000000
Q ss_pred ------CCcEEEe-------------------------ec---CCc-cccc---------CCeE-----------EE---
Q 011908 300 ------NPLTVDL-------------------------VG---DSD-QKLA---------DGIS-----------LY--- 321 (475)
Q Consensus 300 ------~~~~~~~-------------------------~~---~~~-~~~~---------~~~~-----------~~--- 321 (475)
.|..+.. .+ ... ..+. +..+ ..
T Consensus 623 keVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 623 KEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 0000000 00 000 0000 0000 00
Q ss_pred EEeccCcchhhHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCC---CcE
Q 011908 322 SIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR---FNI 396 (475)
Q Consensus 322 ~~~~~~~~k~~~l~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~---~~v 396 (475)
........|..++..++-.+ ..+++++.||....-...+..+|. ++++...+.|....++|-..++.|.... ..+
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 01112345667777777554 348899999998888888888884 5688999999999999999999998765 458
Q ss_pred EEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcE
Q 011908 397 LIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVL 441 (475)
Q Consensus 397 LvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~ 441 (475)
|.+|.+...|+|+-.++.||+||..+++...+ .-|+-|.|....+
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~ev 829 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEV 829 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhhe
Confidence 89999999999999999999999999998887 6688888876544
No 152
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=3.7e-12 Score=132.58 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=86.3
Q ss_pred hHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCC-CcEEEEecccccCCCC
Q 011908 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR-FNILIATDVAARGLDV 409 (475)
Q Consensus 332 ~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~-~~vLvaT~~l~~GiDi 409 (475)
.++..+.+.+..|.|+||-|.|++.+|.++..|. ++++..+|+++....|-+-+-+ .|+ -.|-|||+++.+|.||
T Consensus 616 Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAGRGTDI 692 (1112)
T PRK12901 616 AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAGRGTDI 692 (1112)
T ss_pred HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcCCCcCc
Confidence 3455556667789999999999999999999995 4677778888755443333322 344 4699999999999999
Q ss_pred C--------CCCEEEecCCCCC--hhHHHhhccCCCCCCCcEEEeeChhhh
Q 011908 410 P--------NVDLVELVVLERK--EVQFLSTQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 410 p--------~~~~vI~~~~~~~--~~~~~~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
. +=-+||--..+.| ...|+.||+||-|.+|.+-+|++-+|.
T Consensus 693 kLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 693 KLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred ccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 6 3345665545544 345569999999999999888887655
No 153
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.44 E-value=8.7e-12 Score=128.67 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=99.7
Q ss_pred cchhhHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCC--CcEEEEeccc
Q 011908 328 YEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR--FNILIATDVA 403 (475)
Q Consensus 328 ~~k~~~l~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~--~~vLvaT~~l 403 (475)
..|...|..+++++ ..|+++|||..-....+-+..+|.- ++....+.|....++|+..|++|.... ...+++|..-
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 34667777777664 4588999999999999988888854 577888999999999999999999865 4678899999
Q ss_pred ccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCC--cEEEeeChhhh
Q 011908 404 ARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSR--VLSEMLDADLL 450 (475)
Q Consensus 404 ~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~--~~~~~~~~~~~ 450 (475)
..|||+-+++.||+||.++|+.-.- .-|+-|.|+.. ..+-+++....
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchH
Confidence 9999999999999999999986444 56778888754 45666665544
No 154
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=5.4e-12 Score=120.80 Aligned_cols=333 Identities=20% Similarity=0.240 Sum_probs=215.3
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEE-ccCCCCh--hHHhHHHHHHHHHhhhhc----------------------cCCCC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGR-ARTGTGK--TLAFGIPILDKIIKFNEK----------------------HGRGR 172 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~-~~tGsGK--T~~~~~~~l~~~~~~~~~----------------------~~~~~ 172 (475)
.-.++|+.|.+.+....+.+|++.. +..+.|+ +-+|.+.+++++++.+.. ...-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3357999999999999888887653 2334555 567888999998774431 01124
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCce----E-----------------------------EEEcCCC--------h
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDT----I-----------------------------CVYGGTP--------I 211 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~----~-----------------------------~~~g~~~--------~ 211 (475)
.|+|||+||+++.|..+.+.+..++.|..- + ++.|+.+ .
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 689999999999999999888877433221 0 0111111 1
Q ss_pred hHHHHHhh---CCCCEEEEccHHHHHHHHhC------CCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCC------
Q 011908 212 SHQMRALD---YGVDAVVGTPGRVIDLIKRN------ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN------ 276 (475)
Q Consensus 212 ~~~~~~~~---~~~~Ilv~T~~~l~~~l~~~------~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~------ 276 (475)
..+...+. ...+|+||+|-.|..++... .-.++.+.++|||.+|-++.. ....+..++..++..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q-NwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ-NWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh-hHHHHHHHHHHhhcCcccccC
Confidence 11111111 13799999999998888632 224678999999999976543 455556666655321
Q ss_pred ------------------CcEEEEeeecChhHHHHHHHhcCCCcEE----EeecC-C----ccccc---CCeEEEEEecc
Q 011908 277 ------------------RQSMMFSATMPPWIRSLTNKYLKNPLTV----DLVGD-S----DQKLA---DGISLYSIATS 326 (475)
Q Consensus 277 ------------------~~~l~~SAT~~~~~~~~~~~~~~~~~~~----~~~~~-~----~~~~~---~~~~~~~~~~~ 326 (475)
+|.+++|+--.+....+.+.++.+-.-. .+.+. . ..++. ..+....+...
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 3788888888888888777765432111 01000 0 00001 11111111122
Q ss_pred Ccchhh-HHHHHHHhhcC--CCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 011908 327 MYEKPS-IIGQLITEHAK--GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (475)
Q Consensus 327 ~~~k~~-~l~~~~~~~~~--~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~ 402 (475)
...+.. ....++-+..+ ...++||.|+.-+--++.+++++ .+....+|...+.+.-.+.-+-|..|+.+||+.|..
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 222222 22233323222 35789999999999999999965 577778888888888888889999999999999987
Q ss_pred cc--cCCCCCCCCEEEecCCCCChhHHH-----hhccCCCCC----CCcEEEeeChhhhh
Q 011908 403 AA--RGLDVPNVDLVELVVLERKEVQFL-----STQISRPGK----SRVLSEMLDADLLS 451 (475)
Q Consensus 403 l~--~GiDip~~~~vI~~~~~~~~~~~~-----~gR~gR~g~----~~~~~~~~~~~~~~ 451 (475)
+. +-.++.++..||+|.+|.+|..|. .+|..--|+ .-.|.++++.-|.-
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i 671 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRI 671 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhH
Confidence 66 788999999999999999999887 333332232 24777777765553
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=1.3e-10 Score=123.28 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=59.0
Q ss_pred CCCCCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHH
Q 011908 118 GISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l 193 (475)
.+..+++.|.+.+..+. .+.+.++.+|||+|||++.+.+++...... +...++++.+.|..-..|..+++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHHHH
Confidence 34445999999887654 567899999999999999999998876431 22367999999999999999999
Q ss_pred HHh
Q 011908 194 HES 196 (475)
Q Consensus 194 ~~~ 196 (475)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 884
No 156
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.39 E-value=1.6e-12 Score=98.21 Aligned_cols=79 Identities=39% Similarity=0.681 Sum_probs=68.6
Q ss_pred HHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHHhhccCCCCCC
Q 011908 360 LAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFLSTQISRPGKS 438 (475)
Q Consensus 360 l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~~gR~gR~g~~ 438 (475)
+++.|. .++.+..+||++++.+|..+++.|.+|...|||+|+++++|+|+|++++||+++++.+...+. |+.||++|.
T Consensus 3 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~-Q~~gR~~R~ 81 (82)
T smart00490 3 LAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYI-QRIGRAGRA 81 (82)
T ss_pred HHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHH-HhhcccccC
Confidence 445553 368899999999999999999999999999999999999999999999999999999988877 666666654
Q ss_pred C
Q 011908 439 R 439 (475)
Q Consensus 439 ~ 439 (475)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 3
No 157
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.38 E-value=1.5e-12 Score=105.61 Aligned_cols=134 Identities=19% Similarity=0.155 Sum_probs=80.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (475)
++-.++...+|+|||--.+..++....+ .+.++|++.||+.++..+++.++.. .+..- ......
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~-t~~~~~--- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFH-TNARMR--- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----SEEEE-STTSS----
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----CcccC-ceeeec---
Confidence 3446889999999998766655554333 3778999999999999999988754 22221 111101
Q ss_pred HHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC--CCCCcEEEEeeecChh
Q 011908 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPW 289 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~--~~~~~~l~~SAT~~~~ 289 (475)
....+..|-+.|+..+.+.+.. .....+++++|+||+|-.-..+ -..+..+..+ .....+++||||||-.
T Consensus 68 -~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 68 -THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred -cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 1123467889999998887766 5557899999999999632221 1111122221 1335799999999864
No 158
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.37 E-value=5.9e-11 Score=112.87 Aligned_cols=153 Identities=22% Similarity=0.258 Sum_probs=100.4
Q ss_pred CCCcHHHHHHhhhhhcCC-----cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEPAMQGR-----DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~-----~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
..|-++|.+.+-.+.... ..++....|-|||...+..+++. -.+.+.|+++|+-+| .||.+++.
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae----------~~ra~tLVvaP~VAl-mQW~nEI~ 251 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE----------VDRAPTLVVAPTVAL-MQWKNEIE 251 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc----------cccCCeeEEccHHHH-HHHHHHHH
Confidence 457799999987765432 36888999999998765544442 235569999999886 68999999
Q ss_pred HhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCC-------------CCC--ccEEEEeccccccc
Q 011908 195 ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN-------------LSE--VQFVVLDEADQMLS 259 (475)
Q Consensus 195 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~-------------~~~--l~~vIiDE~H~~~~ 259 (475)
....+--.+.++-|.......+.+ .+++++.+|+..+-+..++.... +.+ +--+|+||+|.+-+
T Consensus 252 ~~T~gslkv~~YhG~~R~~nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 252 RHTSGSLKVYIYHGAKRDKNIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKD 330 (791)
T ss_pred HhccCceEEEEEecccccCCHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccc
Confidence 987654444444444433333333 34799999999887766553221 122 34699999998866
Q ss_pred cCcHHHHHHHHHhCCCCCcEEEEeeecC
Q 011908 260 VGFAEDVEVILERLPQNRQSMMFSATMP 287 (475)
Q Consensus 260 ~~~~~~~~~il~~~~~~~~~l~~SAT~~ 287 (475)
.. ....+.+.. + ...+.+++|+||-
T Consensus 331 R~-snTArAV~~-L-~tt~rw~LSGTPL 355 (791)
T KOG1002|consen 331 RQ-SNTARAVFA-L-ETTYRWCLSGTPL 355 (791)
T ss_pred cc-ccHHHHHHh-h-HhhhhhhccCCcc
Confidence 42 222233222 1 2345788899973
No 159
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.37 E-value=5e-11 Score=117.76 Aligned_cols=124 Identities=16% Similarity=0.298 Sum_probs=102.4
Q ss_pred CcchhhHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCC-CcEEEEeccc
Q 011908 327 MYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR-FNILIATDVA 403 (475)
Q Consensus 327 ~~~k~~~l~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~-~~vLvaT~~l 403 (475)
...|...|..++..+ +.++++++|..--+..+.+.++|. +++....+.|.....+|..+..+|...+ .-+|++|.+.
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 345667777777664 457899999999999999999984 5789999999999999999999999865 4578899999
Q ss_pred ccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCC--cEEEeeChhhh
Q 011908 404 ARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSR--VLSEMLDADLL 450 (475)
Q Consensus 404 ~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~--~~~~~~~~~~~ 450 (475)
.-||++..++.||+|+.++++.... .-|+-|.|++. .++-++...-.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 9999999999999999999997766 88999999765 45555554433
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.33 E-value=1.9e-10 Score=117.58 Aligned_cols=258 Identities=17% Similarity=0.203 Sum_probs=160.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMR 216 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~ 216 (475)
-.++.+|.|||||... +..+...+. ..+..+++++..+.|+.+.+.+|+...- ++....-.++....
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~---- 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALK-------NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIID---- 118 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhcc-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccccc----
Confidence 3689999999999644 333333221 2367799999999999999999987632 22211111111000
Q ss_pred HhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHH-------HHHhCCCCCcEEEEeeecChh
Q 011908 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV-------ILERLPQNRQSMMFSATMPPW 289 (475)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~-------il~~~~~~~~~l~~SAT~~~~ 289 (475)
....+-++.+.+.|.... ...+.++++||+||+-..+..-|...+++ +...+.+...+|+|-||+...
T Consensus 119 --~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred --ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 012466777777665443 22367799999999987655423222221 233345677899999999999
Q ss_pred HHHHHHHhcCCCcEEEeecCCccc-ccCCeEEE---------------------------------EEeccCcchhhHHH
Q 011908 290 IRSLTNKYLKNPLTVDLVGDSDQK-LADGISLY---------------------------------SIATSMYEKPSIIG 335 (475)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------------~~~~~~~~k~~~l~ 335 (475)
+.++.....++..+..+.++.... ...+.... .......+....+.
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 888888876554433332221100 00000000 00000123456777
Q ss_pred HHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC--C
Q 011908 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN--V 412 (475)
Q Consensus 336 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~--~ 412 (475)
.+..++..|.++-|||.|...++.+++.... ..++..++|.-+..+ + +. =++.+|++.|+++..|+++.. .
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhc
Confidence 8888888899999999999999999988755 456777777766552 2 22 256899999999999999853 3
Q ss_pred CEEEec
Q 011908 413 DLVELV 418 (475)
Q Consensus 413 ~~vI~~ 418 (475)
+.|.-|
T Consensus 348 ~~~f~y 353 (824)
T PF02399_consen 348 DSMFAY 353 (824)
T ss_pred eEEEEE
Confidence 444433
No 161
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.30 E-value=6.9e-11 Score=116.89 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=79.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhc--CCCcE-EEEecccccCCCCCCCCEEEec
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRD--GRFNI-LIATDVAARGLDVPNVDLVELV 418 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~--g~~~v-LvaT~~l~~GiDip~~~~vI~~ 418 (475)
...+++|+.........+...+++ +.....+||.....+|+.+++.|.. |..+| |++-.+..+|+|+-+++|+|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 355777777666666777777755 5778899999999999999999975 43444 5555788899999999999999
Q ss_pred CCCCChhHHH--hhccCCCCCCCcEE
Q 011908 419 VLERKEVQFL--STQISRPGKSRVLS 442 (475)
Q Consensus 419 ~~~~~~~~~~--~gR~gR~g~~~~~~ 442 (475)
|+.+++.--. .-|..|.|+...++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceE
Confidence 9999985333 78999999877554
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.28 E-value=3.2e-11 Score=115.29 Aligned_cols=144 Identities=20% Similarity=0.154 Sum_probs=83.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ 214 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~ 214 (475)
+..++..++|+|||+.++..+ ..+...... .....+||+||. .+..||.+++.+++. .+++....|+......
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~-~~l~~~~~~---~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALI-SYLKNEFPQ---RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRL 100 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHH-HHHHHCCTT---SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHT
T ss_pred CCEEEEECCCCCchhhhhhhh-hhhhhcccc---ccccceeEeecc-chhhhhhhhhccccccccccccccccccccccc
Confidence 458999999999998775444 333331110 111249999999 788999999999984 4555554444312222
Q ss_pred HHHhhCCCCEEEEccHHHHHHHH---hCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 215 MRALDYGVDAVVGTPGRVIDLIK---RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~---~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
........+++|+|++.+...-. ...+.-.+.++||+||+|.+.+. .......+..+. ...++++||||.+
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccccccc-cceEEeecccccc
Confidence 22223347999999998881100 00111134889999999998543 333344455554 6778999999854
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.27 E-value=7.4e-10 Score=119.77 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=97.3
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (475)
+..+|.--+|||||++.+..+-..+.. ...+.++|||.++.|-.|..+.|..+........ ...+...-.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~ 344 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKE 344 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHH
Confidence 358999999999999886665544432 4478899999999999999999999865433322 3334444444
Q ss_pred HhhCC-CCEEEEccHHHHHHHHhCC-C-CCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 217 ALDYG-VDAVVGTPGRVIDLIKRNA-L-NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 217 ~~~~~-~~Ilv~T~~~l~~~l~~~~-~-~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
.+..+ -.|+|+|.++|........ . .-.+--+||+|||||- ++|.....+-..+ ++...+++|+||.-
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~-~~a~~~gFTGTPi~ 415 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKAL-KKAIFIGFTGTPIF 415 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHh-ccceEEEeeCCccc
Confidence 45544 4899999999987775531 1 1222347999999983 3555555554555 44789999999863
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.15 E-value=7.4e-10 Score=114.12 Aligned_cols=310 Identities=19% Similarity=0.177 Sum_probs=184.8
Q ss_pred CcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--C
Q 011908 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S 199 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~--~ 199 (475)
++++-.+.+..+.-...-+..+-||-|||+++.+|+.-..+. |..+.+++...-||..-++++..++. +
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 334444466666655678999999999999999988766544 66688999999999877776666554 6
Q ss_pred CceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhC------CCCCCCccEEEEecccccccc------------
Q 011908 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLSV------------ 260 (475)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~l~~vIiDE~H~~~~~------------ 260 (475)
+.+.+...++...++...+. ++|.++|...| .+++..+ ......+.+.|+||++.++-.
T Consensus 150 lsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 77888888887766666554 79999998766 2233211 112346888999999975411
Q ss_pred ----CcHHHHHHHHHhCCCC--------C---------------------------------------------------
Q 011908 261 ----GFAEDVEVILERLPQN--------R--------------------------------------------------- 277 (475)
Q Consensus 261 ----~~~~~~~~il~~~~~~--------~--------------------------------------------------- 277 (475)
.....+..+...+... .
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 1122223332222110 0
Q ss_pred ----------------------------------------------------------cEEEEeeecChhHHHHHHHhcC
Q 011908 278 ----------------------------------------------------------QSMMFSATMPPWIRSLTNKYLK 299 (475)
Q Consensus 278 ----------------------------------------------------------~~l~~SAT~~~~~~~~~~~~~~ 299 (475)
...+||+|.......+...|.
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~- 386 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYG- 386 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccC-
Confidence 111222221111111111111
Q ss_pred CCcEEEeecCCcccccCCeEEE-EEeccCcch-hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCC
Q 011908 300 NPLTVDLVGDSDQKLADGISLY-SIATSMYEK-PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGD 376 (475)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k-~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~ 376 (475)
...+.+.. ..+..+.+.. .+.....+| ..++..+...+..+.|+||-+.+++.+|.+.+.|. .+++-..+..+
T Consensus 387 -l~vv~iPT---nrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk 462 (822)
T COG0653 387 -LDVVVIPT---NRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAK 462 (822)
T ss_pred -CceeeccC---CCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccc
Confidence 11111100 0001111111 112222233 34566677778889999999999999999999995 46777788877
Q ss_pred CCHHHHHHHHHHHhcCC-CcEEEEecccccCCCCCCCCE---E------EecCCC----CChhHHHhhccCCCCCCCcEE
Q 011908 377 ISQSQRERTLSAFRDGR-FNILIATDVAARGLDVPNVDL---V------ELVVLE----RKEVQFLSTQISRPGKSRVLS 442 (475)
Q Consensus 377 ~~~~~r~~~~~~F~~g~-~~vLvaT~~l~~GiDip~~~~---v------I~~~~~----~~~~~~~~gR~gR~g~~~~~~ 442 (475)
....+-+.+ .+ .|+ --|-|||+++.+|-||.--.. | ...+-. +-...|+.||+||-|.+|...
T Consensus 463 ~h~~EA~Ii--a~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~ 539 (822)
T COG0653 463 NHAREAEII--AQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSR 539 (822)
T ss_pred cHHHHHHHH--hh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhh
Confidence 664333333 22 343 358999999999999852221 1 112222 223446699999999999888
Q ss_pred EeeChhhh
Q 011908 443 EMLDADLL 450 (475)
Q Consensus 443 ~~~~~~~~ 450 (475)
++++-+|.
T Consensus 540 F~lSleD~ 547 (822)
T COG0653 540 FYLSLEDD 547 (822)
T ss_pred hhhhhHHH
Confidence 77776554
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.15 E-value=2.8e-09 Score=108.69 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=92.8
Q ss_pred hhhHHHHHHHhhc-CCCcEEEEeCChHHHHHHHHHHHc-----------------------cCCeeeecCCCCHHHHHHH
Q 011908 330 KPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAK-----------------------SYNCEPLHGDISQSQRERT 385 (475)
Q Consensus 330 k~~~l~~~~~~~~-~~~~~lVf~~~~~~~~~l~~~l~~-----------------------~~~~~~lh~~~~~~~r~~~ 385 (475)
|.-+|..|++... -|.++|||..+....+.+..+|.. +.....+.|.....+|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 4556666665433 378999999999988888887742 1235568899999999999
Q ss_pred HHHHhcCC----CcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEe
Q 011908 386 LSAFRDGR----FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEM 444 (475)
Q Consensus 386 ~~~F~~g~----~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~ 444 (475)
.+.|.+-. .-.||+|.+.+-|||+-.++.||++|..|+|.-.. +=|+.|.|+...|+.+
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99998742 24899999999999999999999999999987665 7899999998776554
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.15 E-value=7.5e-10 Score=104.27 Aligned_cols=75 Identities=25% Similarity=0.234 Sum_probs=58.0
Q ss_pred CCCCcHHHHHHhhh----hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 119 ISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~----i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
++++++.|.+.+.. +..+.++++.+|||+|||++++.+++..+...... ..+.++++.++|..+..|...+++
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHHH
Confidence 34789999996554 45678899999999999999999998776542111 023479999999999999877776
Q ss_pred Hh
Q 011908 195 ES 196 (475)
Q Consensus 195 ~~ 196 (475)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 64
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.15 E-value=7.5e-10 Score=104.27 Aligned_cols=75 Identities=25% Similarity=0.234 Sum_probs=58.0
Q ss_pred CCCCcHHHHHHhhh----hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 119 ISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~----i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
++++++.|.+.+.. +..+.++++.+|||+|||++++.+++..+...... ..+.++++.++|..+..|...+++
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHHH
Confidence 34789999996554 45678899999999999999999998776542111 023479999999999999877776
Q ss_pred Hh
Q 011908 195 ES 196 (475)
Q Consensus 195 ~~ 196 (475)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 64
No 168
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.04 E-value=1.1e-08 Score=112.60 Aligned_cols=321 Identities=18% Similarity=0.187 Sum_probs=200.8
Q ss_pred CCCcHHHHHHhhhhh-----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEPAM-----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~-----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
.++.++|.+.++.+. ...+.++..+.|.|||+..+..+.. +..... ...+.+++++|+. +..+|.+++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~----~~~~~~liv~p~s-~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK----VYLGPALIVVPAS-LLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhccc----CCCCCeEEEecHH-HHHHHHHHHh
Confidence 467899999987755 2457899999999999876444443 222110 1134689999974 5688999999
Q ss_pred HhCCCCc-eEEEEcCCCh----hHHHHHhhCC-----CCEEEEccHHHHHHH-HhCCCCCCCccEEEEeccccccccCcH
Q 011908 195 ESAPSLD-TICVYGGTPI----SHQMRALDYG-----VDAVVGTPGRVIDLI-KRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 195 ~~~~~~~-~~~~~g~~~~----~~~~~~~~~~-----~~Ilv~T~~~l~~~l-~~~~~~~~~l~~vIiDE~H~~~~~~~~ 263 (475)
++.+.++ +....|.... .......... .+++++|.+.+.... ....+.-...+.+|+||+|++.+.. .
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 9988888 6666665541 2222222221 689999999887632 1222334467899999999976542 2
Q ss_pred HHHHHHHHhCCCCCcEEEEeeecChh-HH---HHHH-Hh---------------cCCCcEE-------------------
Q 011908 264 EDVEVILERLPQNRQSMMFSATMPPW-IR---SLTN-KY---------------LKNPLTV------------------- 304 (475)
Q Consensus 264 ~~~~~il~~~~~~~~~l~~SAT~~~~-~~---~~~~-~~---------------~~~~~~~------------------- 304 (475)
.....+. .+. ....+.+|+||.++ +. .+.. .. +..+...
T Consensus 490 ~~~~~l~-~~~-~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLK-ALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHh-hcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 2222222 332 22246667776211 00 0000 00 0000000
Q ss_pred ------------E--eecCCc-----------------------c----------c---c--------------------
Q 011908 305 ------------D--LVGDSD-----------------------Q----------K---L-------------------- 314 (475)
Q Consensus 305 ------------~--~~~~~~-----------------------~----------~---~-------------------- 314 (475)
. +..... . . .
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 0 000000 0 0 0
Q ss_pred ---cCCeEEEEEe-----c---------------------cCc-chhhHHHHHH-H-hhcCCC--cEEEEeCChHHHHHH
Q 011908 315 ---ADGISLYSIA-----T---------------------SMY-EKPSIIGQLI-T-EHAKGG--KCIVFTQTKRDADRL 360 (475)
Q Consensus 315 ---~~~~~~~~~~-----~---------------------~~~-~k~~~l~~~~-~-~~~~~~--~~lVf~~~~~~~~~l 360 (475)
....+..... . ... .|...+..++ . ....+. ++++|++.......+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 0000000000 0 001 4556666666 2 334566 899999999999999
Q ss_pred HHHHHcc-CCeeeecCCCCHHHHHHHHHHHhcC--CCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCC
Q 011908 361 AHAMAKS-YNCEPLHGDISQSQRERTLSAFRDG--RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRP 435 (475)
Q Consensus 361 ~~~l~~~-~~~~~lh~~~~~~~r~~~~~~F~~g--~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~ 435 (475)
...+... +....++|.++..+|...++.|.++ ...+++++.+...|+++-.+++||++|+.+++.... ..|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 9999654 5899999999999999999999986 456777778999999999999999999999998887 8899999
Q ss_pred CCCCcE--EEeeChhh
Q 011908 436 GKSRVL--SEMLDADL 449 (475)
Q Consensus 436 g~~~~~--~~~~~~~~ 449 (475)
|+...+ +-++..+.
T Consensus 808 gQ~~~v~v~r~i~~~t 823 (866)
T COG0553 808 GQKRPVKVYRLITRGT 823 (866)
T ss_pred cCcceeEEEEeecCCc
Confidence 987644 44555444
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.93 E-value=6.5e-09 Score=105.68 Aligned_cols=310 Identities=15% Similarity=0.223 Sum_probs=178.9
Q ss_pred HHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC-CCceEEE
Q 011908 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICV 205 (475)
Q Consensus 127 ~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-~~~~~~~ 205 (475)
..++..+..+.-+++.+.||+|||.-+..-+|+.++.. ..+.-..+.+..|++..+..+++++..--. .....+
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~n----s~g~~~na~v~qprrisaisiaerva~er~e~~g~tv- 458 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLEN----SNGASFNAVVSQPRRISAISLAERVANERGEEVGETC- 458 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhc----cccccccceeccccccchHHHHHHHHHhhHHhhcccc-
Confidence 33444555556689999999999999988888888662 222234577778999988888877654321 111111
Q ss_pred EcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC---CCCCcEEEE
Q 011908 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQNRQSMMF 282 (475)
Q Consensus 206 ~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~---~~~~~~l~~ 282 (475)
+.+.+.....-...-.|.++|-+-++..+... +..+.++|+||.|...- -++.+..+++.+ ....++++|
T Consensus 459 --gy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv--~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 459 --GYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDV--DTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred --cccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhcc--chHHHHHHHHhhhccchhhhhhhh
Confidence 11111111111112368899988888777653 34577899999997432 233344444333 345566777
Q ss_pred eeecChhH--------------------HHHHHHhcCCCcEEE----------eecCCcccccCCe-EEEEEec------
Q 011908 283 SATMPPWI--------------------RSLTNKYLKNPLTVD----------LVGDSDQKLADGI-SLYSIAT------ 325 (475)
Q Consensus 283 SAT~~~~~--------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~------ 325 (475)
|||+..+. ..+....+..+.... ...+......+.. ......+
T Consensus 532 satIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~ 611 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNE 611 (1282)
T ss_pred hcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcc
Confidence 77753211 111111111100000 0000000000000 0000000
Q ss_pred ----------cCcchhhHHHHHHHhh---cCCCcEEEEeCChHHHHHHHHHHHc--------cCCeeeecCCCCHHHHHH
Q 011908 326 ----------SMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK--------SYNCEPLHGDISQSQRER 384 (475)
Q Consensus 326 ----------~~~~k~~~l~~~~~~~---~~~~~~lVf~~~~~~~~~l~~~l~~--------~~~~~~lh~~~~~~~r~~ 384 (475)
+...-..+++.++... .-.+-++||.+.....-.+..++.. .+.+...|+.....+..+
T Consensus 612 ~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrk 691 (1282)
T KOG0921|consen 612 STRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRK 691 (1282)
T ss_pred hhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhh
Confidence 0000112233333222 1246799999999988888877743 367888999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCC--------CChh--------HHH-hhccCCCCC--CCcEEEee
Q 011908 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLE--------RKEV--------QFL-STQISRPGK--SRVLSEML 445 (475)
Q Consensus 385 ~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~--------~~~~--------~~~-~gR~gR~g~--~~~~~~~~ 445 (475)
+.+.-..|..+++++|.+.+..+.+.++..||+.+.- .+.. .+- .||.||+|+ .|.|+.++
T Consensus 692 vf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lc 771 (1282)
T KOG0921|consen 692 VFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLC 771 (1282)
T ss_pred ccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceeccccccccc
Confidence 9999999999999999999999999888888753321 1111 111 678888774 68888777
Q ss_pred Chh
Q 011908 446 DAD 448 (475)
Q Consensus 446 ~~~ 448 (475)
+.-
T Consensus 772 s~a 774 (1282)
T KOG0921|consen 772 SRA 774 (1282)
T ss_pred HHH
Confidence 643
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.88 E-value=3.6e-08 Score=90.43 Aligned_cols=127 Identities=21% Similarity=0.270 Sum_probs=91.6
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|. .|++.|.-++=.+.. ..+.++.||-|||+++.+++.-..+. |..|=|++.+..||..=++++..++
T Consensus 75 g~-~p~~vQll~~l~L~~--G~laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 75 GL-RPYDVQLLGALALHK--GRLAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp S-----HHHHHHHHHHHT--TSEEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred CC-cccHHHHhhhhhccc--ceeEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 44 688888877766655 45999999999999988877766644 7789999999999998887777765
Q ss_pred C--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHH-HHHHhCC------CCCCCccEEEEecccccc
Q 011908 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQML 258 (475)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~l~~~~------~~~~~l~~vIiDE~H~~~ 258 (475)
. ++.+.+..++.+...+...+. ++|++||...+. ++++... .....+.++||||+|.++
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 4 788888888887665555554 589999999885 3443311 124678999999999765
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.68 E-value=2e-07 Score=98.57 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=84.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH-----HhC----CC--CceEEE
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH-----ESA----PS--LDTICV 205 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~-----~~~----~~--~~~~~~ 205 (475)
.++.+.++||||||.+|+-.++..... ..-.+++|+||+.++-+.+.+.+. .+| .+ +....+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~-------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~ 132 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK-------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVI 132 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH-------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEE
Confidence 368999999999999998888766543 224569999999998887776554 222 22 223333
Q ss_pred EcCCC-------hhHHHHHhh-------CCCCEEEEccHHHHHHHH-hCC----------CCCCC----ccEEEEecccc
Q 011908 206 YGGTP-------ISHQMRALD-------YGVDAVVGTPGRVIDLIK-RNA----------LNLSE----VQFVVLDEADQ 256 (475)
Q Consensus 206 ~g~~~-------~~~~~~~~~-------~~~~Ilv~T~~~l~~~l~-~~~----------~~~~~----l~~vIiDE~H~ 256 (475)
.++.+ .-.....+. +..+|+|.|.+.|..-.. ... ..+.. --+||+||.|+
T Consensus 133 ~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~ 212 (986)
T PRK15483 133 NAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHR 212 (986)
T ss_pred ecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCC
Confidence 33220 011111111 147899999988854221 100 11111 13899999999
Q ss_pred ccccCcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 257 ~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
+... ...+..+ ..+++.. ++.+|||.+.
T Consensus 213 ~~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 213 FPRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCcc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 7542 3344444 5665544 6779999876
No 172
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.63 E-value=2.8e-07 Score=81.16 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=73.1
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHH-------HHH
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-------EKE 192 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~-------~~~ 192 (475)
...+..|..+++.+....-+++.||.|||||+.++..+++.+.+ +.-.+++++-|.....+.. .+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--TT----SS-------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 45789999999999977779999999999999999999888865 3345688888877542221 111
Q ss_pred HHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHh
Q 011908 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (475)
Q Consensus 193 l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~ 272 (475)
+.-+...+.-. ..........+.+.....|-+..+. +.+.. .++ -.+||+||++.+ ...+++.++.+
T Consensus 76 ~~p~~~p~~d~--l~~~~~~~~~~~~~~~~~Ie~~~~~-----~iRGr-t~~-~~~iIvDEaQN~----t~~~~k~ilTR 142 (205)
T PF02562_consen 76 MEPYLRPIYDA--LEELFGKEKLEELIQNGKIEIEPLA-----FIRGR-TFD-NAFIIVDEAQNL----TPEELKMILTR 142 (205)
T ss_dssp --TTTHHHHHH--HTTTS-TTCHHHHHHTTSEEEEEGG-----GGTT---B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHH--HHHHhChHhHHHHhhcCeEEEEehh-----hhcCc-ccc-ceEEEEecccCC----CHHHHHHHHcc
Confidence 11111000000 0000000111111122344444422 11211 132 378999999986 56778889999
Q ss_pred CCCCCcEEEEee
Q 011908 273 LPQNRQSMMFSA 284 (475)
Q Consensus 273 ~~~~~~~l~~SA 284 (475)
++.+.+++++.-
T Consensus 143 ~g~~skii~~GD 154 (205)
T PF02562_consen 143 IGEGSKIIITGD 154 (205)
T ss_dssp B-TT-EEEEEE-
T ss_pred cCCCcEEEEecC
Confidence 988887776543
No 173
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.59 E-value=3.1e-07 Score=81.56 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=71.5
Q ss_pred CCcHHHHHHhhhhhcCC--cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 121 KLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~--~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
+|++.|.+++..++... -.+++|+.|||||.+. ..+...+.. .+.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~~~---- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--------AGKRVIGLAPTNKAAKELREKTG---- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--------TT--EEEEESSHHHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--------CCCeEEEECCcHHHHHHHHHhhC----
Confidence 47899999999997554 4788999999999753 344444433 26789999999998888666631
Q ss_pred CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC----CCCCCccEEEEeccccccccCcHHHHHHHHHhCC
Q 011908 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA----LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (475)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~----~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~ 274 (475)
+. ..|...++....... ..+...+++||||+-.+ -...+..++...+
T Consensus 68 -~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~ 118 (196)
T PF13604_consen 68 -IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAK 118 (196)
T ss_dssp -S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-
T ss_pred -cc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHH
Confidence 11 122221111111100 01456679999999986 3456677777776
Q ss_pred C-CCcEEEE
Q 011908 275 Q-NRQSMMF 282 (475)
Q Consensus 275 ~-~~~~l~~ 282 (475)
. +.+++++
T Consensus 119 ~~~~klilv 127 (196)
T PF13604_consen 119 KSGAKLILV 127 (196)
T ss_dssp T-T-EEEEE
T ss_pred hcCCEEEEE
Confidence 6 4444443
No 174
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.58 E-value=1.5e-08 Score=104.96 Aligned_cols=256 Identities=19% Similarity=0.239 Sum_probs=148.4
Q ss_pred cHHHHHHhhhhhc-CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC--CC
Q 011908 123 FPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PS 199 (475)
Q Consensus 123 ~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~--~~ 199 (475)
.+.|.+.+..+.. +.+.++-+|||+|||++|.+++...+.. ..+.++++++|-.+|...-.+...... ++
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~-------~p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY-------YPGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc-------CCCccEEEEcCCchhhcccccchhhhcccCC
Confidence 3455555544432 3468889999999999999999888765 446789999999999987666665543 36
Q ss_pred CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh--CCCCCCCccEEEEeccccccccCcHHHHHHHHHhC----
Q 011908 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---- 273 (475)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~--~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~---- 273 (475)
++++-++|...... ... ..++++|+||+++...... ....+.+++++|+||.|.+.+. ++..++.+....
T Consensus 1002 ~k~ie~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCc
Confidence 77887887776552 222 2369999999999877663 3345788999999999976544 444333332222
Q ss_pred ---CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCccccc-----CCeEEEEEeccCcchhhHHHHHHHhhcCCC
Q 011908 274 ---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA-----DGISLYSIATSMYEKPSIIGQLITEHAKGG 345 (475)
Q Consensus 274 ---~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~ 345 (475)
++..+.+++|--+ .+...+..+.-..+. ... .....+++ ..++..........+.....+.++...+..
T Consensus 1078 ~~t~~~vr~~glsta~-~na~dla~wl~~~~~-~nf-~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~ 1154 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTAL-ANANDLADWLNIKDM-YNF-RPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIK 1154 (1230)
T ss_pred cccCcchhhhhHhhhh-hccHHHHHHhCCCCc-CCC-CcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCC
Confidence 2334455554332 222333333221111 110 00111111 111111111111223344556677777889
Q ss_pred cEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCC
Q 011908 346 KCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRF 394 (475)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~ 394 (475)
+++||+.++++....+.-|-. .-+...++- +..+-+.++...++...
T Consensus 1155 p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1155 PVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNL 1206 (1230)
T ss_pred ceEEEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccch
Confidence 999999998876655544421 122233333 35555666666555443
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.54 E-value=2.6e-07 Score=84.79 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=51.0
Q ss_pred CCcHHHHHHhhhhhcCCc-EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
+|.+.|.+|+..++.... .+++||+|||||.+..- ++..+...........+.++++++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999998888 99999999999965543 333331100000114477899999999999999999888
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.46 E-value=5.2e-06 Score=87.97 Aligned_cols=67 Identities=7% Similarity=-0.028 Sum_probs=59.3
Q ss_pred CCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 222 ~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
..|++.||..+..-+..+.+.++.+..+||||||++.+..-...+..+++..++..-+.+|||.|..
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 5899999999988888888999999999999999998776777778888888888899999999853
No 177
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.46 E-value=4.5e-06 Score=83.06 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=65.0
Q ss_pred HHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHH
Q 011908 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l 193 (475)
+...+..+|..-|..|+..+++..-.|||||+|+|||++..-.+++.+.. .+..+|+++|+.....|.++.+
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--------cCCceEEEcccchhHHHHHHHH
Confidence 33345568899999999999998889999999999999886555544432 2556999999999999999999
Q ss_pred HHhCCCCceEEEE
Q 011908 194 HESAPSLDTICVY 206 (475)
Q Consensus 194 ~~~~~~~~~~~~~ 206 (475)
.+- +++++-++
T Consensus 475 h~t--gLKVvRl~ 485 (935)
T KOG1802|consen 475 HKT--GLKVVRLC 485 (935)
T ss_pred Hhc--CceEeeee
Confidence 876 35554433
No 178
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.38 E-value=8.6e-06 Score=75.12 Aligned_cols=168 Identities=16% Similarity=0.175 Sum_probs=105.9
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhc----------CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCC
Q 011908 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ----------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~----------~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~ 172 (475)
.+.+++.+++ .| .|+..|.+++-...+ ..-.++-..||.||--...-.+++..++ +
T Consensus 25 ~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------G- 90 (303)
T PF13872_consen 25 RLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------G- 90 (303)
T ss_pred ccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-------C-
Confidence 4456665443 33 478999998865542 1236777779999998776667766654 1
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCC-CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC---CC------
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPS-LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LN------ 242 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~---~~------ 242 (475)
..+++++..+..|-.+..+.++..... +.+..+. ..+.. ....-...|+++|+..|........ ..
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~-~~~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLN-KFKYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCCcccceech-hhccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 345999999999999999999987642 2222221 11111 0011235799999998876543211 00
Q ss_pred ---CCCccEEEEeccccccccCc--------HHHHHHHHHhCCCCCcEEEEeeecChh
Q 011908 243 ---LSEVQFVVLDEADQMLSVGF--------AEDVEVILERLPQNRQSMMFSATMPPW 289 (475)
Q Consensus 243 ---~~~l~~vIiDE~H~~~~~~~--------~~~~~~il~~~~~~~~~l~~SAT~~~~ 289 (475)
-+.-++||+||+|...+..- +.....+-+++ ++.+++.+|||...+
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgase 223 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASE 223 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCC
Confidence 11235999999998765422 23444455566 455699999997653
No 179
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.36 E-value=2.3e-05 Score=79.36 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=86.6
Q ss_pred CCcEEEEeCChHHHHHHHHHHHc-c------------------CCeeeecCCCCHHHHHHHHHHHhcCC---CcEEEEec
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAK-S------------------YNCEPLHGDISQSQRERTLSAFRDGR---FNILIATD 401 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~-~------------------~~~~~lh~~~~~~~r~~~~~~F~~g~---~~vLvaT~ 401 (475)
+.++|||..+......+.+.+.+ . ....-+.|..+..+|++.+++|.+.- .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 56899999998888888888854 1 12335788889999999999998642 35899999
Q ss_pred ccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhh
Q 011908 402 VAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 402 ~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
...-||++-.++.+|++++.+++.-.. .-|+.|.|+...|+++=.--|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 999999999999999999999987666 6799999999999876544333
No 180
>PRK10536 hypothetical protein; Provisional
Probab=98.34 E-value=1.9e-05 Score=71.64 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=80.3
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH-------H
Q 011908 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ-------V 189 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q-------~ 189 (475)
.++...+..|...+..+.+...+++.|++|||||+.+...+++.+.. +.-.++++.=|+....+. .
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 35567889999999999887789999999999999887777766643 112234444455432211 1
Q ss_pred HHHHHHhCC----CCceEEEEcCCChhHHHH-Hhh-CCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcH
Q 011908 190 EKEFHESAP----SLDTICVYGGTPISHQMR-ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 190 ~~~l~~~~~----~~~~~~~~g~~~~~~~~~-~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~ 263 (475)
.+.+..|+. .+.. +.+.. ... .+. ..-.|-|... .+++... + +-++||+||++.+ -.
T Consensus 128 ~eK~~p~~~pi~D~L~~--~~~~~----~~~~~~~~~~~~Iei~~l----~ymRGrt--l-~~~~vIvDEaqn~----~~ 190 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVR--RLGAS----FMQYCLRPEIGKVEIAPF----AYMRGRT--F-ENAVVILDEAQNV----TA 190 (262)
T ss_pred HHHHHHHHHHHHHHHHH--HhChH----HHHHHHHhccCcEEEecH----HHhcCCc--c-cCCEEEEechhcC----CH
Confidence 122221111 0000 01111 111 111 1123444441 2222222 2 3378999999986 35
Q ss_pred HHHHHHHHhCCCCCcEEEE
Q 011908 264 EDVEVILERLPQNRQSMMF 282 (475)
Q Consensus 264 ~~~~~il~~~~~~~~~l~~ 282 (475)
..++.++.+++.+.+++++
T Consensus 191 ~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 191 AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHhhcCCCCEEEEe
Confidence 7788889999888766653
No 181
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.25 E-value=6.5e-06 Score=81.53 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=54.8
Q ss_pred CCCcHHHHHHhhhhhcCCc-EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
..+.+-|..|+......++ .+++||+|+|||.+....+.+.+.+ +.++|+++||.+-...+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 3577889999998888765 7899999999999887777777644 7889999999998888887644
No 182
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.23 E-value=6.4e-06 Score=80.41 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=61.1
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC-CCCceEEEEcCCChhHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMR 216 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~-~~~~~~~~~g~~~~~~~~~ 216 (475)
-++|.|..|||||++++-.+... .. ...+..++++++...|....++.+.... +..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~---------------- 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QN------SEEGKKVLYLCGNHPLRNKLREQLAKKYNPKL---------------- 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hc------cccCCceEEEEecchHHHHHHHHHhhhcccch----------------
Confidence 37899999999998775444433 10 1346779999999999998888887653 100
Q ss_pred HhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011908 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~ 259 (475)
....+..+..+...+.........+++|||||||++..
T Consensus 60 -----~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 -----KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred -----hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 01222233333222222223467899999999999876
No 183
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.21 E-value=2.3e-05 Score=80.97 Aligned_cols=143 Identities=20% Similarity=0.223 Sum_probs=89.1
Q ss_pred CcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCc
Q 011908 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~ 201 (475)
..++|+.|+.....++-.+|.|++|||||.+. ..++..+.+.. ......+++++||---|....+.+......+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 35899999999888888999999999999764 33333333211 12245789999999999988887765433221
Q ss_pred eEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHH------hCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCC
Q 011908 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~------~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~ 275 (475)
. .. .. ......-..|..+++.... ....+...++++||||+-++ -...+..+++.+++
T Consensus 228 ~---~~-----~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~ 291 (615)
T PRK10875 228 L---TD-----EQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPP 291 (615)
T ss_pred c---ch-----hh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhccc
Confidence 1 00 00 0001112344444432211 11112335689999999975 25566778888888
Q ss_pred CCcEEEEeee
Q 011908 276 NRQSMMFSAT 285 (475)
Q Consensus 276 ~~~~l~~SAT 285 (475)
+.++|++.=.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8887776544
No 184
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.15 E-value=3.7e-05 Score=79.37 Aligned_cols=142 Identities=19% Similarity=0.201 Sum_probs=88.0
Q ss_pred cHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCce
Q 011908 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT 202 (475)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~ 202 (475)
.++|+.++..++.++-.++.|+.|||||.+. ..++..+.+.... ..+.++++++||---|..+.+.+......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 3799999999999888999999999999765 3333333321111 11357999999999888888777664332211
Q ss_pred EEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHH------hCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCC
Q 011908 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~------~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~ 276 (475)
. . .. .....+-..|..+++.... ....+...++++||||+-++. ...+..+++.+++.
T Consensus 223 ~-------~-~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~ 286 (586)
T TIGR01447 223 A-------E-AL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPN 286 (586)
T ss_pred c-------h-hh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCC
Confidence 0 0 00 0011222445444443211 111123457899999999763 44567788888888
Q ss_pred CcEEEEee
Q 011908 277 RQSMMFSA 284 (475)
Q Consensus 277 ~~~l~~SA 284 (475)
.++|++.=
T Consensus 287 ~rlIlvGD 294 (586)
T TIGR01447 287 TKLILLGD 294 (586)
T ss_pred CEEEEECC
Confidence 88776543
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.14 E-value=3.7e-05 Score=68.39 Aligned_cols=149 Identities=19% Similarity=0.326 Sum_probs=92.5
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhc---CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ---GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~---~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 176 (475)
+|+....|..++=.+.. ++ -+++.|.++...+.+ +.+.+.|.-+|.|||.|. +|++..+++ +...-+
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LA-------dg~~Lv 73 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALA-------DGSRLV 73 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHc-------CCCcEE
Confidence 35555667777666643 33 589999999998875 468999999999999876 667666665 223456
Q ss_pred EEEeCCHHhHHHHHHHHHHhCCCC---ceEE--EEcCCChhH-H---H----HHhhCCCCEEEEccHHHHHHHHh-----
Q 011908 177 LVLAPTRELAKQVEKEFHESAPSL---DTIC--VYGGTPISH-Q---M----RALDYGVDAVVGTPGRVIDLIKR----- 238 (475)
Q Consensus 177 lil~Pt~~La~Q~~~~l~~~~~~~---~~~~--~~g~~~~~~-~---~----~~~~~~~~Ilv~T~~~l~~~l~~----- 238 (475)
.+++| ++|..|.++.+...+.++ .+.. +.-..+... . . +.....-.|+++||+.++++...
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERL 152 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHH
Confidence 66667 679999998888765432 1222 112222111 1 1 11122358999999988654311
Q ss_pred --CCC-----------CCCCccEEEEeccccccc
Q 011908 239 --NAL-----------NLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 239 --~~~-----------~~~~l~~vIiDE~H~~~~ 259 (475)
... .+..-.-=|+||+|..+.
T Consensus 153 ~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 153 QDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 110 123344568899997654
No 186
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.13 E-value=4.1e-05 Score=81.29 Aligned_cols=132 Identities=22% Similarity=0.226 Sum_probs=81.8
Q ss_pred HHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHH
Q 011908 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l 193 (475)
+.+..-..+++.|++++..+..++-.++.|++|||||.+. -.++..+... +....+++++||-..|..+.+..
T Consensus 316 ~~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e~~ 388 (720)
T TIGR01448 316 VEKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL------GGLLPVGLAAPTGRAAKRLGEVT 388 (720)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc------CCCceEEEEeCchHHHHHHHHhc
Confidence 3343335899999999999988888999999999999754 3444443221 11156889999988877544332
Q ss_pred HHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh-----CCCCCCCccEEEEeccccccccCcHHHHHH
Q 011908 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-----NALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (475)
Q Consensus 194 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-----~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~ 268 (475)
+.. ..|..+++..... ..-.....+++|+||++++. ...+..
T Consensus 389 -----g~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~ 435 (720)
T TIGR01448 389 -----GLT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALS 435 (720)
T ss_pred -----CCc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHH
Confidence 110 0121221111000 00112457899999999863 334567
Q ss_pred HHHhCCCCCcEEEEeee
Q 011908 269 ILERLPQNRQSMMFSAT 285 (475)
Q Consensus 269 il~~~~~~~~~l~~SAT 285 (475)
++..++...+++++.=+
T Consensus 436 Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 436 LLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHhCCCCCEEEEECcc
Confidence 77788877777776433
No 187
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.09 E-value=3.3e-05 Score=80.74 Aligned_cols=67 Identities=24% Similarity=0.204 Sum_probs=54.5
Q ss_pred CCcHHHHHHhhhhhcC-CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 121 KLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.+.+.|.+++..++.. ...+++||+|||||.+..-.+.+.+ + .|.++++++||...+.++.+.+...
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~--------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K--------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H--------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 6799999999998876 5689999999999977654444444 2 2668999999999999999988874
No 188
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.04 E-value=3e-05 Score=66.96 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=57.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHccC---CeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec--ccccCCCCCC--CCEEE
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAKSY---NCEPLHGDISQSQRERTLSAFRDGRFNILIATD--VAARGLDVPN--VDLVE 416 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~~~---~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~--~l~~GiDip~--~~~vI 416 (475)
+++++||++|.+..+.+.+.+.... ...++.. ...+...+++.|++++..||+++. .+.+|+|+|+ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 5899999999999999999986532 2233333 256788899999999999999998 9999999995 78899
Q ss_pred ecCCCC
Q 011908 417 LVVLER 422 (475)
Q Consensus 417 ~~~~~~ 422 (475)
+...|.
T Consensus 87 i~glPf 92 (167)
T PF13307_consen 87 IVGLPF 92 (167)
T ss_dssp EES---
T ss_pred ecCCCC
Confidence 988774
No 189
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.01 E-value=4.6e-05 Score=78.66 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=89.4
Q ss_pred CCCCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhcc-------CC-----------------
Q 011908 119 ISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-------GR----------------- 170 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~-------~~----------------- 170 (475)
+++|++.|...+..++ ..++.++..|||+|||++.+-..+........+. .+
T Consensus 19 P~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~ 98 (945)
T KOG1132|consen 19 PFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSE 98 (945)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchh
Confidence 4689999998887765 3468999999999999987777766654432100 00
Q ss_pred ---------CCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCC---------------ChhHH------------
Q 011908 171 ---------GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT---------------PISHQ------------ 214 (475)
Q Consensus 171 ---------~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~---------------~~~~~------------ 214 (475)
...+.+.+-.-|-.-..|+.+++++.....+..++..-. .....
T Consensus 99 e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 99 EAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred hhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 013567777777777888888888765433333221100 00000
Q ss_pred -------------------------------------HHHhhCCCCEEEEccHHHHHHHHhCCCCCC-CccEEEEecccc
Q 011908 215 -------------------------------------MRALDYGVDAVVGTPGRVIDLIKRNALNLS-EVQFVVLDEADQ 256 (475)
Q Consensus 215 -------------------------------------~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~-~l~~vIiDE~H~ 256 (475)
...+...++|+++-+..|.+-..+....++ .-.+||+||||.
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAHN 258 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAHN 258 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccccEEEEecccc
Confidence 022223478999999988887766553332 346899999998
Q ss_pred cc
Q 011908 257 ML 258 (475)
Q Consensus 257 ~~ 258 (475)
+.
T Consensus 259 iE 260 (945)
T KOG1132|consen 259 IE 260 (945)
T ss_pred HH
Confidence 74
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.99 E-value=2e-05 Score=57.88 Aligned_cols=52 Identities=27% Similarity=0.354 Sum_probs=38.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l 193 (475)
.-++++||+|||||.+.+-.+...+..+ ... +..+++++||+..+.++.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~----~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAAR----ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHh----cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3466699999999977655555444221 112 667999999999999998888
No 191
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.0001 Score=73.01 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=76.3
Q ss_pred EEccCCCChhHHhHHHHHHHHHhhhhccCCCCCc-eEEEEeCCHHhHHHHHHHHHHhCC---CCceEEEEcCCChhH-HH
Q 011908 141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP-LCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH-QM 215 (475)
Q Consensus 141 i~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~-~~lil~Pt~~La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~-~~ 215 (475)
..+.||||||++++-.++.+..+ |+ ..++.|......+.....|..-.. -+.-....++....- ..
T Consensus 2 f~matgsgkt~~ma~lil~~y~k---------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK---------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh---------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee
Confidence 46899999999988888877744 33 367778776666655544432110 000011112221111 01
Q ss_pred ---HHhhCCCCEEEEccHHHHHHHHhCCC------CCCCcc-EEEEeccccccccC---------cHHHHHHH-HHhC--
Q 011908 216 ---RALDYGVDAVVGTPGRVIDLIKRNAL------NLSEVQ-FVVLDEADQMLSVG---------FAEDVEVI-LERL-- 273 (475)
Q Consensus 216 ---~~~~~~~~Ilv~T~~~l~~~l~~~~~------~~~~l~-~vIiDE~H~~~~~~---------~~~~~~~i-l~~~-- 273 (475)
.....+..|.++|.+.|...+.+... ++.+.. +++-||+|++.... -...++.. +..+
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~ 152 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ 152 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc
Confidence 11234578999999999877755332 233344 55679999985431 11122221 1122
Q ss_pred CCCCcEEEEeeecCh
Q 011908 274 PQNRQSMMFSATMPP 288 (475)
Q Consensus 274 ~~~~~~l~~SAT~~~ 288 (475)
+++.-++-+|||.+.
T Consensus 153 nkd~~~lef~at~~k 167 (812)
T COG3421 153 NKDNLLLEFSATIPK 167 (812)
T ss_pred CCCceeehhhhcCCc
Confidence 233446778999884
No 192
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.84 E-value=0.0004 Score=74.21 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=74.7
Q ss_pred CCCcHHHHHHhhhhhcC-CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 120 SKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
..|++.|++++..+..+ +-.+++|+.|+|||.+. -++...+ . ..|..+++++||--.|..+.+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~-~-------~~g~~V~~~ApTg~Aa~~L~~~~----- 416 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAW-E-------AAGYRVIGAALSGKAAEGLQAES----- 416 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHH-H-------hCCCeEEEEeCcHHHHHHHHhcc-----
Confidence 37999999999998874 55899999999999653 3333333 2 23778999999987776554221
Q ss_pred CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC-CCCC
Q 011908 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277 (475)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-~~~~ 277 (475)
++. -.|..++...+......+...+++||||+-.+... .+..++... ....
T Consensus 417 g~~------------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~ 468 (744)
T TIGR02768 417 GIE------------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGA 468 (744)
T ss_pred CCc------------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCC
Confidence 111 11222222112222223567889999999976433 334455432 2455
Q ss_pred cEEEEe
Q 011908 278 QSMMFS 283 (475)
Q Consensus 278 ~~l~~S 283 (475)
+++++.
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 555554
No 193
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.84 E-value=0.00033 Score=75.97 Aligned_cols=126 Identities=18% Similarity=0.130 Sum_probs=77.4
Q ss_pred CCCCCCcHHHHHHhhhhhcCCc-EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 117 RGISKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
.++ .|++-|.+++..+..+.+ .+++|..|+|||.+ +-++...+ + ..|.+++.++||-..|....+.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e-------~~G~~V~~~ApTGkAA~~L~e~--- 409 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-E-------AAGYEVRGAALSGIAAENLEGG--- 409 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-H-------HcCCeEEEecCcHHHHHHHhhc---
Confidence 454 799999999999998654 78999999999975 33333333 2 2378899999998776554321
Q ss_pred hCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC-C
Q 011908 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-P 274 (475)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-~ 274 (475)
. ++. -.|..++..-.......+...+++||||+-.+.. ..+..++... +
T Consensus 410 -t-Gi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~ 459 (988)
T PRK13889 410 -S-GIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAAD 459 (988)
T ss_pred -c-Ccc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhh
Confidence 0 111 1132333222222223355678999999997643 3445555543 3
Q ss_pred CCCcEEEEeee
Q 011908 275 QNRQSMMFSAT 285 (475)
Q Consensus 275 ~~~~~l~~SAT 285 (475)
...++|++.=+
T Consensus 460 ~garvVLVGD~ 470 (988)
T PRK13889 460 AGAKVVLVGDP 470 (988)
T ss_pred CCCEEEEECCH
Confidence 45556655433
No 194
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.81 E-value=0.00016 Score=74.58 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=36.6
Q ss_pred CCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCC
Q 011908 393 RFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRP 435 (475)
Q Consensus 393 ~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~ 435 (475)
..+.+++-.++.+|+|-|||=.++-+....|..+-+ +||..|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 478999999999999999999999888888877666 7777774
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.70 E-value=0.0002 Score=67.13 Aligned_cols=142 Identities=18% Similarity=0.257 Sum_probs=82.0
Q ss_pred CCCCCCcHHHHHHhhhhhcCC--cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHH-----
Q 011908 117 RGISKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV----- 189 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~--~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~----- 189 (475)
.|+......|.-|++.++... =+.+.|..|||||+.|+.+.+.+..... .-.++++.=|+-.+.+++
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~------~y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK------RYRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh------hhceEEEecCCcCcccccCcCCC
Confidence 366666677888888888653 2788999999999999988888876621 123356655766554332
Q ss_pred --HHHHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCC----------ccEEEEeccccc
Q 011908 190 --EKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE----------VQFVVLDEADQM 257 (475)
Q Consensus 190 --~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~----------l~~vIiDE~H~~ 257 (475)
.+.+.-|...+ ....+.+.+.. =++.+.+...+.+..+.+.. -.++|||||+.+
T Consensus 298 ~eEeKm~PWmq~i-----------~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 298 TEEEKMGPWMQAI-----------FDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred chhhhccchHHHH-----------HhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 01111111000 00011111100 01133333444333332211 257999999997
Q ss_pred cccCcHHHHHHHHHhCCCCCcEEEE
Q 011908 258 LSVGFAEDVEVILERLPQNRQSMMF 282 (475)
Q Consensus 258 ~~~~~~~~~~~il~~~~~~~~~l~~ 282 (475)
...+++.++.+.++..+++++
T Consensus 364 ----TpheikTiltR~G~GsKIVl~ 384 (436)
T COG1875 364 ----TPHELKTILTRAGEGSKIVLT 384 (436)
T ss_pred ----CHHHHHHHHHhccCCCEEEEc
Confidence 577889999999888866654
No 196
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.67 E-value=0.00042 Score=72.47 Aligned_cols=137 Identities=16% Similarity=0.122 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCc-EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCC
Q 011908 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt 182 (475)
..+.|...+. -...|...|++|+..++.-+| .+|.|-+|+|||.+....+- .+.. .|.++|+.+-|
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIk-iL~~--------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIK-ILVA--------LGKKVLLTSYT 722 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHH-HHHH--------cCCeEEEEehh
Confidence 3455555543 123688999999998887655 79999999999976644333 3222 27778988888
Q ss_pred HHhHHHHHHHHHHhCCCCceEEE---------------EcCCC--hhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCC
Q 011908 183 RELAKQVEKEFHESAPSLDTICV---------------YGGTP--ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE 245 (475)
Q Consensus 183 ~~La~Q~~~~l~~~~~~~~~~~~---------------~g~~~--~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~ 245 (475)
-.....+.-.++... +...-+ +.+.+ .-...+...+.+.|+.+|--.+-+.+. ....
T Consensus 723 hsAVDNILiKL~~~~--i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~ 796 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGFG--IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQ 796 (1100)
T ss_pred hHHHHHHHHHHhccC--cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccc
Confidence 877777766666542 221111 11111 111122333457788888444433332 2456
Q ss_pred ccEEEEeccccccc
Q 011908 246 VQFVVLDEADQMLS 259 (475)
Q Consensus 246 l~~vIiDE~H~~~~ 259 (475)
++++|||||-.+..
T Consensus 797 FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 797 FDYCIIDEASQILL 810 (1100)
T ss_pred cCEEEEcccccccc
Confidence 89999999998653
No 197
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.64 E-value=0.0012 Score=72.31 Aligned_cols=137 Identities=19% Similarity=0.177 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhc-CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
+++...+.....+ +.|++-|.+++..+.. ++-.+++|+.|+|||.+. -++.... + ..|.+++.++||-.
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~-e-------~~G~~V~g~ApTgk 436 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAW-E-------AAGYRVVGGALAGK 436 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHH-H-------HcCCeEEEEcCcHH
Confidence 4455555444444 4799999999998864 455899999999999644 3333333 2 23788999999987
Q ss_pred hHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHH
Q 011908 185 LAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (475)
Q Consensus 185 La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~ 264 (475)
-|....+.. ++.. -|..++..........+..-+++||||+..+. ..
T Consensus 437 AA~~L~e~~-----Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~ 483 (1102)
T PRK13826 437 AAEGLEKEA-----GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SR 483 (1102)
T ss_pred HHHHHHHhh-----CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----HH
Confidence 776543321 2211 12222211111122335567799999999763 34
Q ss_pred HHHHHHHhCC-CCCcEEEEeee
Q 011908 265 DVEVILERLP-QNRQSMMFSAT 285 (475)
Q Consensus 265 ~~~~il~~~~-~~~~~l~~SAT 285 (475)
.+..++...+ ...+++++.=+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 4556666654 35566665433
No 198
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.58 E-value=0.00021 Score=68.57 Aligned_cols=123 Identities=18% Similarity=0.104 Sum_probs=74.9
Q ss_pred CcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCc
Q 011908 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~ 201 (475)
|++-|.+++.. ...+++|.|..|||||.+.+--+...+.... ....+++++++|+..|.++.+++...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57889999988 5568999999999999988766666554421 2345699999999999999999888543110
Q ss_pred eEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCC--CCccEEEEeccc
Q 011908 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL--SEVQFVVLDEAD 255 (475)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~--~~l~~vIiDE~H 255 (475)
.. .... ..-.........+.|+|.+.+...+.+..... -.-.+-++|+..
T Consensus 74 ~~---~~~~-~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QE---SSDN-ERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HC---CTT--HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc---cccc-ccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 0000 01111122235788999888765443221111 122356677766
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.52 E-value=0.00028 Score=62.36 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=23.7
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeC
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~P 181 (475)
-.++.|++|+|||..++-.+.... ..+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~---------~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYE---------ERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH---------HcCCeEEEEec
Confidence 368899999999976544443333 22667888766
No 200
>PRK06526 transposase; Provisional
Probab=97.41 E-value=0.0012 Score=60.89 Aligned_cols=30 Identities=17% Similarity=-0.017 Sum_probs=21.5
Q ss_pred hhhhcCCcEEEEccCCCChhHHhHHHHHHH
Q 011908 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDK 160 (475)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~~~~~l~~ 160 (475)
+.+..+.++++.||+|+|||..+.......
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 344456789999999999998764433333
No 201
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.39 E-value=0.00054 Score=62.35 Aligned_cols=86 Identities=24% Similarity=0.360 Sum_probs=70.4
Q ss_pred CCCceEEEEeCCHHhHHHHHHHHHHhC-CCCceEEEEcCC-ChhHHHHHhhC-CCCEEEEccHHHHHHHHhCCCCCCCcc
Q 011908 171 GRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGT-PISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~Q~~~~l~~~~-~~~~~~~~~g~~-~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~ 247 (475)
...|.++|++.+-.=|.++.+.++.+- .+..+.-++.-. ...++...+.. ..+|.||||+++..++..+.+.++++.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 346889999999998999999998874 345555555554 66777777775 489999999999999999999999999
Q ss_pred EEEEecccc
Q 011908 248 FVVLDEADQ 256 (475)
Q Consensus 248 ~vIiDE~H~ 256 (475)
+||+|--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998874
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.37 E-value=0.0028 Score=52.90 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.|++|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999644
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.34 E-value=0.00064 Score=55.98 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=13.4
Q ss_pred CCcEEEEccCCCChhHHhHH
Q 011908 136 GRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~ 155 (475)
++.+++.|++|+|||.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 34689999999999976533
No 204
>PHA02533 17 large terminase protein; Provisional
Probab=97.31 E-value=0.0019 Score=66.09 Aligned_cols=126 Identities=16% Similarity=0.114 Sum_probs=76.6
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~ 199 (475)
+.|.++|...+..+..++-.++..+=..|||.++...++..... ..+.++++++|+..-|..+++.++.....
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 57999999999887656667888999999998876544444332 23568999999999999998888765432
Q ss_pred CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011908 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~ 259 (475)
+....-.+-.........+.++..|.+.|.. .....-.+..++|+||+|.+.+
T Consensus 131 ~P~l~~~~i~~~~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 131 LPDFLQPGIVEWNKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred CHHHhhcceeecCccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC
Confidence 2110000000000011112344555454411 1111123567899999997644
No 205
>PRK08181 transposase; Validated
Probab=97.29 E-value=0.0038 Score=58.04 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=33.8
Q ss_pred CcHHHHHHhh----hhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHH
Q 011908 122 LFPIQKAVLE----PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 122 l~~~Q~~~i~----~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 189 (475)
+...|..++. .+..++++++.||+|+|||-.+. ++...+.. .|..++++. ...|..+.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--------~g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIE--------NGWRVLFTR-TTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHH--------cCCceeeee-HHHHHHHH
Confidence 3445555542 23466789999999999997553 33333322 255565554 44555544
No 206
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.26 E-value=0.0012 Score=64.72 Aligned_cols=121 Identities=20% Similarity=0.283 Sum_probs=70.9
Q ss_pred CCcHHHHHHhhhh------hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHH--HHH
Q 011908 121 KLFPIQKAVLEPA------MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV--EKE 192 (475)
Q Consensus 121 ~l~~~Q~~~i~~i------~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~--~~~ 192 (475)
+|+.-|+++++.+ ..+.++.+.|+-|+|||.++ -.+...+ . ..+..+++++||-..|..+ -..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~-~-------~~~~~~~~~a~tg~AA~~i~~G~T 71 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYL-R-------SRGKKVLVTAPTGIAAFNIPGGRT 71 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHh-c-------cccceEEEecchHHHHHhccCCcc
Confidence 3678899998888 55677999999999999754 2222222 2 2356799999999888765 334
Q ss_pred HHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHh
Q 011908 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (475)
Q Consensus 193 l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~ 272 (475)
+..++. +.... .. . ... .+.+- ......+...+++|+||+-.+... .-..+...++.
T Consensus 72 ~hs~f~-i~~~~----~~---~-------~~~---~~~~~----~~~~~~l~~~~~lIiDEism~~~~-~l~~i~~~lr~ 128 (364)
T PF05970_consen 72 IHSFFG-IPINN----NE---K-------SQC---KISKN----SRLRERLRKADVLIIDEISMVSAD-MLDAIDRRLRD 128 (364)
T ss_pred hHHhcC-ccccc----cc---c-------ccc---ccccc----chhhhhhhhheeeecccccchhHH-HHHHHHHhhhh
Confidence 444442 22110 00 0 000 11110 011123677889999999976544 34444444554
Q ss_pred C
Q 011908 273 L 273 (475)
Q Consensus 273 ~ 273 (475)
+
T Consensus 129 i 129 (364)
T PF05970_consen 129 I 129 (364)
T ss_pred h
Confidence 4
No 207
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0058 Score=59.83 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=69.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe--CCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~--Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~ 214 (475)
..+++.||||+|||.++.-.+........ ..+..+.+++ +.+.-+..+...+.+.. ++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~-----~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-gvpv~~---------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD-----DKSLNIKIITIDNYRIGAKKQIQTYGDIM-GIPVKA---------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc-----cCCCeEEEEeccCccHHHHHHHHHHhhcC-CcceEe----------
Confidence 35889999999999877543332221100 1234444444 33444444433333322 222211
Q ss_pred HHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccC-cHHHHHHHHHhCCCC-CcEEEEeeecChh-HH
Q 011908 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQN-RQSMMFSATMPPW-IR 291 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~-~~~~~~~il~~~~~~-~~~l~~SAT~~~~-~~ 291 (475)
+-+++.+...+.. +.+.++|+||++.+..... ....+..++...... -..+++|||.... +.
T Consensus 239 -----------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 239 -----------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred -----------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 1233444444443 4578899999999865321 224555566655433 3578999998643 33
Q ss_pred HHHHHh
Q 011908 292 SLTNKY 297 (475)
Q Consensus 292 ~~~~~~ 297 (475)
.....|
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 334444
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=97.24 E-value=0.007 Score=58.08 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=72.3
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCC---HHhHHHHHHHHHHhCCCCceEEEEcCCChhHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT---RELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt---~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~ 214 (475)
-+++.|++|+|||.+..-.+. .+.. .+..++++... .....|+......+ ++.+.....+..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~-~l~~--------~g~~V~li~~Dt~R~~a~eqL~~~a~~l--gv~v~~~~~g~d---- 206 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAY-YLKK--------NGFSVVIAAGDTFRAGAIEQLEEHAERL--GVKVIKHKYGAD---- 206 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HHHH--------cCCeEEEecCCcCcHHHHHHHHHHHHHc--CCceecccCCCC----
Confidence 378899999999986544332 3322 24556555432 33445554444433 232221111111
Q ss_pred HHHhhCCCCEEEEccHH-HHHHHHhCCCCCCCccEEEEecccccc-ccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHH
Q 011908 215 MRALDYGVDAVVGTPGR-VIDLIKRNALNLSEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~-l~~~l~~~~~~~~~l~~vIiDE~H~~~-~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~ 292 (475)
|.. +.+.+.... ..+.++|+||.+.++. +......++.+.+...++..+++++||...+...
T Consensus 207 --------------p~~v~~~ai~~~~--~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~ 270 (336)
T PRK14974 207 --------------PAAVAYDAIEHAK--ARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE 270 (336)
T ss_pred --------------HHHHHHHHHHHHH--hCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH
Confidence 111 112222111 2356789999999875 2335566777777777777789999998766555
Q ss_pred HHHHhc
Q 011908 293 LTNKYL 298 (475)
Q Consensus 293 ~~~~~~ 298 (475)
.+..+.
T Consensus 271 ~a~~f~ 276 (336)
T PRK14974 271 QAREFN 276 (336)
T ss_pred HHHHHH
Confidence 555543
No 209
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.16 E-value=0.048 Score=64.48 Aligned_cols=237 Identities=14% Similarity=0.147 Sum_probs=123.7
Q ss_pred CCCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
+.|++.|.+++..++.. +-.+++|+.|+|||.+. -.++... + ..|..++.++||-.-+.+..+......
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~-~-------~~G~~V~~lAPTgrAA~~L~e~~g~~A 498 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLA-S-------EQGYEIQIITAGSLSAQELRQKIPRLA 498 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHH-H-------hcCCeEEEEeCCHHHHHHHHHHhcchh
Confidence 36899999999999876 45899999999999643 3333333 2 347889999999987776655432110
Q ss_pred CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC-CCC
Q 011908 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQN 276 (475)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-~~~ 276 (475)
. ........+.. ..-..|...++ .....+..-+++||||+-.+. ...+..++... +.+
T Consensus 499 ~-----------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 499 S-----------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred h-----------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 0 00001111111 11122222222 222334567899999999763 44556666655 356
Q ss_pred CcEEEEeee--cCh----hHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchh-hHHHHHHHhhcCCCcEEE
Q 011908 277 RQSMMFSAT--MPP----WIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKP-SIIGQLITEHAKGGKCIV 349 (475)
Q Consensus 277 ~~~l~~SAT--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~~~~~~~~~~~~lV 349 (475)
.+++++.=+ +++ .....+.... ...+.+...... ...+ .....+..++. .+...++........++|
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~g--v~t~~l~~i~rq--~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tli 631 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGG--VTTYAWVDTKQQ--KASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQV 631 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCC--CcEEEeeccccc--Ccce--eeeccCchHHHHHHHHHHHhcccccCceEE
Confidence 777776544 111 2222222221 122222111111 1111 11111111222 233344433334446899
Q ss_pred EeCChHHHHHHHHHHHccC-----------Ceeee-cCCCCHHHHHHHHHHHhcCC
Q 011908 350 FTQTKRDADRLAHAMAKSY-----------NCEPL-HGDISQSQRERTLSAFRDGR 393 (475)
Q Consensus 350 f~~~~~~~~~l~~~l~~~~-----------~~~~l-h~~~~~~~r~~~~~~F~~g~ 393 (475)
+.++.++...+.......+ ....+ -..|+..++.. -..|+.|.
T Consensus 632 v~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~-~~~Yr~Gd 686 (1960)
T TIGR02760 632 LATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN-AAHYKQGM 686 (1960)
T ss_pred EcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh-HhhcCCCC
Confidence 9999888887777764321 12222 23566666663 36666664
No 210
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.11 E-value=0.0043 Score=65.54 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=58.6
Q ss_pred HHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHH
Q 011908 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 191 (475)
..+....-..|++-|++++..- ..+++|.|..|||||.+.+--+...+... ...+.++++++.|+..|..+.+
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~-----~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARG-----QAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhC-----CCCHHHeEEEeccHHHHHHHHH
Confidence 4444444468999999998643 34689999999999988765554444321 1235579999999999999999
Q ss_pred HHHHhCC
Q 011908 192 EFHESAP 198 (475)
Q Consensus 192 ~l~~~~~ 198 (475)
++.+..+
T Consensus 260 RL~~~lg 266 (684)
T PRK11054 260 RIRERLG 266 (684)
T ss_pred HHHHhcC
Confidence 9987653
No 211
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.01 E-value=0.0022 Score=53.00 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.||+|||||..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 356899999999999755
No 212
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.95 E-value=0.0022 Score=69.21 Aligned_cols=154 Identities=18% Similarity=0.100 Sum_probs=93.5
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhh---------ccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCC-ceEEE
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNE---------KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-DTICV 205 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~---------~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~-~~~~~ 205 (475)
|+.+++.-..|.|||..-+...+....+... ..+....+-+||++|. ++..||.+++....... ++...
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 3557888889999998776555443211100 1111123458999996 55689999999988755 66555
Q ss_pred EcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCC--------------CCC-C-----ccEEEEeccccccccCcHHH
Q 011908 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--------------NLS-E-----VQFVVLDEADQMLSVGFAED 265 (475)
Q Consensus 206 ~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~--------------~~~-~-----l~~vIiDE~H~~~~~~~~~~ 265 (475)
.|-.+...-.......+||+++|+..|...+..... ..+ . +=-|++||++.+-. ....
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~ 530 (1394)
T KOG0298|consen 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSA 530 (1394)
T ss_pred echhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHH
Confidence 553332222222223489999999998765533210 010 0 11478999996544 3444
Q ss_pred HHHHHHhCCCCCcEEEEeeecChhHHHH
Q 011908 266 VEVILERLPQNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 266 ~~~il~~~~~~~~~l~~SAT~~~~~~~~ 293 (475)
..+.+..+ ......++|+||...+.++
T Consensus 531 ~a~M~~rL-~~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 531 AAEMVRRL-HAINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHh-hhhceeeecCCchhhhhhh
Confidence 45555555 4566899999987765543
No 213
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.95 E-value=0.0095 Score=67.62 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=47.0
Q ss_pred CCCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHH
Q 011908 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 190 (475)
..|++.|++++..++.. +-++|+|..|+|||.+. -.++..+.... ...+..++.++||-.-+....
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~----e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLP----ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHh----hccCceEEEEechHHHHHHHH
Confidence 37999999999999855 56899999999999753 22333221110 133677999999988776653
No 214
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.94 E-value=0.0072 Score=53.48 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=68.7
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe--CCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHH
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~--Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (475)
+++.||||+|||.+..--+.....+ +.++.+++ ..|.=|.++.+.+.+.. ++.+.. .....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---------~~~v~lis~D~~R~ga~eQL~~~a~~l-~vp~~~--~~~~~----- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---------GKKVALISADTYRIGAVEQLKTYAEIL-GVPFYV--ARTES----- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---------T--EEEEEESTSSTHHHHHHHHHHHHH-TEEEEE--SSTTS-----
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---------cccceeecCCCCCccHHHHHHHHHHHh-ccccch--hhcch-----
Confidence 6789999999998775444333322 33444444 34555555555554433 222221 11100
Q ss_pred HhhCCCCEEEEccHH-HHHHHHhCCCCCCCccEEEEeccccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHH
Q 011908 217 ALDYGVDAVVGTPGR-VIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 217 ~~~~~~~Ilv~T~~~-l~~~l~~~~~~~~~l~~vIiDE~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~ 294 (475)
.|.. +.+.+... .-++.++|+||-+-+... .....+++.++....+..-.+++|||.........
T Consensus 67 -----------~~~~~~~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 67 -----------DPAEIAREALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp -----------CHHHHHHHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred -----------hhHHHHHHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 1111 11223221 124577899999976432 22355667777777666678999999877654444
Q ss_pred HHh
Q 011908 295 NKY 297 (475)
Q Consensus 295 ~~~ 297 (475)
..+
T Consensus 134 ~~~ 136 (196)
T PF00448_consen 134 LAF 136 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 215
>PRK08116 hypothetical protein; Validated
Probab=96.91 E-value=0.029 Score=52.35 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=27.9
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 192 (475)
.+++.|++|+|||..+ .++.+.+.+ .+..++++ +...+..++...
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~--------~~~~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIE--------KGVPVIFV-NFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHH--------cCCeEEEE-EHHHHHHHHHHH
Confidence 4899999999999766 455555544 14445544 445555544433
No 216
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.89 E-value=0.0073 Score=59.26 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=32.6
Q ss_pred CCCCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhh
Q 011908 119 ISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~ 165 (475)
+...+|-|.+-+.++. ++.+.++.+|+|+|||++.+-.++......+
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p 64 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP 64 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC
Confidence 4456788877766554 4568999999999999766555555444433
No 217
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.86 E-value=0.0039 Score=57.40 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=32.7
Q ss_pred CCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecC
Q 011908 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (475)
Q Consensus 240 ~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~ 287 (475)
......++++|+||||.|... -...+++.+........+++.+..+.
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChh
Confidence 344667899999999988544 34555666666666677777777653
No 218
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.84 E-value=0.062 Score=53.65 Aligned_cols=128 Identities=15% Similarity=0.156 Sum_probs=64.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe--CCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~--Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~ 214 (475)
+.+++.||||+|||.+....+...... ..+.++.++. |.+.-+.+....+.+.. ++.+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~-------~~g~~V~li~~D~~r~~a~eqL~~~a~~~-~vp~~----------- 282 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALL-------YGKKKVALITLDTYRIGAVEQLKTYAKIM-GIPVE----------- 282 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEECCccHHHHHHHHHHHHHHh-CCceE-----------
Confidence 457899999999997765433333211 1244455544 22332222222222211 22211
Q ss_pred HHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccc-CcHHHHHHHHHhC-CCCCcEEEEeeecChh-HH
Q 011908 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSATMPPW-IR 291 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~-~~~~~~~~il~~~-~~~~~~l~~SAT~~~~-~~ 291 (475)
.+.++..+...+.. +.+.++|+||.+-+.... .....+..++... .+....+++|||..+. +.
T Consensus 283 ----------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 283 ----------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred ----------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 12344444454543 346799999998653221 1233455555522 2334578899998753 34
Q ss_pred HHHHHh
Q 011908 292 SLTNKY 297 (475)
Q Consensus 292 ~~~~~~ 297 (475)
.....|
T Consensus 349 ~~~~~f 354 (424)
T PRK05703 349 DIYKHF 354 (424)
T ss_pred HHHHHh
Confidence 444444
No 219
>PRK06921 hypothetical protein; Provisional
Probab=96.78 E-value=0.025 Score=52.66 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=27.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 188 (475)
+.++++.|++|+|||..+ .++...+.+ ..+..++++.. ..+..+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~-------~~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMR-------KKGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhh-------hcCceEEEEEH-HHHHHH
Confidence 467999999999999755 444454433 11455666553 344343
No 220
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.73 E-value=0.003 Score=55.56 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=34.2
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
+++.|++|+|||..++-.+...+. .|..++++. +.+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---------~g~~v~~~s-~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------RGEPGLYVT-LEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---------CCCcEEEEE-CCCCHHHHHHHHHHc
Confidence 688999999999877655555552 256677775 456677777777665
No 221
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.096 Score=52.97 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=61.0
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe-C-CHHhHHHHHHHHHHhCCCCceEEEEcCCChhH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA-P-TRELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~-P-t~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~ 213 (475)
++.+.+.|++|+|||.++...+...... ..+.++.++. . .+.-+.++ ++.+...+.+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~-------~~gkkVaLIdtDtyRigA~EQ---Lk~ya~iLgv~v~-------- 411 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ-------HAPRDVALVTTDTQRVGGREQ---LHSYGRQLGIAVH-------- 411 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCceEEEecccccccHHHH---HHHhhcccCceeE--------
Confidence 4568889999999998764333322211 1123344443 2 34333322 2222111111110
Q ss_pred HHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccC-cHHHHHHHHHhCCCCCcEEEEeeecCh-hHH
Q 011908 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP-WIR 291 (475)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~-~~~~~~~il~~~~~~~~~l~~SAT~~~-~~~ 291 (475)
.+.+++.+...+.. +.+.++|+||..=+..... ....+..+ ........+++++++... .+.
T Consensus 412 -----------~a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L-~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 412 -----------EADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----------ecCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHH-HHhhcCCcEEEEECCCChhHHH
Confidence 01133344455543 3467899999997642211 11122222 222234567888888653 334
Q ss_pred HHHHHh
Q 011908 292 SLTNKY 297 (475)
Q Consensus 292 ~~~~~~ 297 (475)
.....|
T Consensus 476 eii~~f 481 (559)
T PRK12727 476 EVVRRF 481 (559)
T ss_pred HHHHHH
Confidence 444443
No 222
>PRK12377 putative replication protein; Provisional
Probab=96.71 E-value=0.011 Score=54.22 Aligned_cols=47 Identities=11% Similarity=0.329 Sum_probs=29.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l 193 (475)
.++++.|++|+|||-.+ .++...+.. .+..+ +.++..+|..++...+
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~--------~g~~v-~~i~~~~l~~~l~~~~ 148 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLA--------KGRSV-IVVTVPDVMSRLHESY 148 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH--------cCCCe-EEEEHHHHHHHHHHHH
Confidence 56899999999999755 444445433 14444 4445566666554443
No 223
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.71 E-value=0.0047 Score=64.56 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=68.7
Q ss_pred cEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCC--cEEEEecccccCCCCCCCCEEEecCCCC
Q 011908 346 KCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF--NILIATDVAARGLDVPNVDLVELVVLER 422 (475)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~--~vLvaT~~l~~GiDip~~~~vI~~~~~~ 422 (475)
+++||+.-..-+..+...+. .++....+.|.|+...|.+.+..|.++.. -.+++..+...|+++-.+.+|+..|+-+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 45555554444444444442 24556667899999999999999986542 2466778889999999999999999988
Q ss_pred ChhHH--HhhccCCCCCCCcE
Q 011908 423 KEVQF--LSTQISRPGKSRVL 441 (475)
Q Consensus 423 ~~~~~--~~gR~gR~g~~~~~ 441 (475)
++..- -+=|+-|.|+...+
T Consensus 621 np~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred ChHHHHHHHHHHHHhccccee
Confidence 87543 37888888876544
No 224
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.68 E-value=0.0094 Score=63.49 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=81.8
Q ss_pred ccCcchhh-HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011908 325 TSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 325 ~~~~~k~~-~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLv 398 (475)
.....|.. ++..++.....+.+++|.+|+++-+++.++.+.+ ++++..+||+++..+|.++++...+|+.+|+|
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvV 369 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVI 369 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 34445544 3334445556788999999999999988887754 47899999999999999999999999999999
Q ss_pred Eec-ccccCCCCCCCCEEEecCCCCChhHHH
Q 011908 399 ATD-VAARGLDVPNVDLVELVVLERKEVQFL 428 (475)
Q Consensus 399 aT~-~l~~GiDip~~~~vI~~~~~~~~~~~~ 428 (475)
+|. .+...+.++++.+||+-...+.+..+.
T Consensus 370 gT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr 400 (681)
T PRK10917 370 GTHALIQDDVEFHNLGLVIIDEQHRFGVEQR 400 (681)
T ss_pred chHHHhcccchhcccceEEEechhhhhHHHH
Confidence 996 455678899999999877776655544
No 225
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.0068 Score=57.99 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=23.7
Q ss_pred cEEEEeccccccccCcHHHH-HHHHHhCCCCCcEEEEeeec
Q 011908 247 QFVVLDEADQMLSVGFAEDV-EVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 247 ~~vIiDE~H~~~~~~~~~~~-~~il~~~~~~~~~l~~SAT~ 286 (475)
.++++||+||+ ...+ ..+|-.+ .+-.++++.||-
T Consensus 106 tiLflDEIHRf-----nK~QQD~lLp~v-E~G~iilIGATT 140 (436)
T COG2256 106 TILFLDEIHRF-----NKAQQDALLPHV-ENGTIILIGATT 140 (436)
T ss_pred eEEEEehhhhc-----Chhhhhhhhhhh-cCCeEEEEeccC
Confidence 46899999994 4444 4445555 566688889984
No 226
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.66 E-value=0.021 Score=65.89 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=75.4
Q ss_pred CCCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
..|++.|++++..++.. +-.+|+|..|+|||.+. -.++..+... ....+..++.++||---+.+..+ .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l----~~~~~~~V~glAPTgrAAk~L~e----~- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL----PESERPRVVGLGPTHRAVGEMRS----A- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh----hcccCceEEEECCcHHHHHHHHh----c-
Confidence 47999999999999975 45899999999999643 3333333210 11235678999999887765432 1
Q ss_pred CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHH----hCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC
Q 011908 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK----RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~----~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~ 273 (475)
++.. .|..+++.... ........-+++||||+=++. ...+..++..+
T Consensus 1036 -Gi~A------------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~~ 1086 (1747)
T PRK13709 1036 -GVDA------------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALI 1086 (1747)
T ss_pred -Ccch------------------------hhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHhh
Confidence 2211 12222221110 011112345799999999764 33455666665
Q ss_pred CC-CCcEEEEeee
Q 011908 274 PQ-NRQSMMFSAT 285 (475)
Q Consensus 274 ~~-~~~~l~~SAT 285 (475)
+. +.++|++.=+
T Consensus 1087 ~~~garvVLVGD~ 1099 (1747)
T PRK13709 1087 AAGGGRAVSSGDT 1099 (1747)
T ss_pred hcCCCEEEEecch
Confidence 53 5666665443
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.63 E-value=0.04 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=17.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
..+++.|++|+|||..+ .++...+
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l 123 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNEL 123 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHH
Confidence 36899999999999765 3444444
No 228
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.029 Score=54.50 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe-CC-HHhHHHHHHHHHHhCCCCceEEEEcCCChhH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA-PT-RELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~-Pt-~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~ 213 (475)
+..+++.||||+|||.+....+...... ....++.+++ .+ +.-+.+....+.+.. ++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~-------~G~~~V~lit~D~~R~ga~EqL~~~a~~~-gv~~~~--------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR-------FGASKVALLTTDSYRIGGHEQLRIFGKIL-GVPVHA--------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEecccccccHHHHHHHHHHHc-CCceEe---------
Confidence 3468999999999998764444333322 1112344443 22 222333344433333 222222
Q ss_pred HHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCc-HHHHHHHHHhCCCCCcEEEEeeecChhH-H
Q 011908 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILERLPQNRQSMMFSATMPPWI-R 291 (475)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~-~~~~~~il~~~~~~~~~l~~SAT~~~~~-~ 291 (475)
+-++..+...+.+ +.+.++++||++=+.....+ ...+..+.....+...++++|||..... .
T Consensus 200 ------------~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 200 ------------VKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ------------cCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 2233333333332 45668899999975321112 2222222121222335888999976544 3
Q ss_pred HHHHHh
Q 011908 292 SLTNKY 297 (475)
Q Consensus 292 ~~~~~~ 297 (475)
.....|
T Consensus 264 evi~~f 269 (374)
T PRK14722 264 EVVQAY 269 (374)
T ss_pred HHHHHH
Confidence 344444
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.09 Score=51.17 Aligned_cols=128 Identities=13% Similarity=0.176 Sum_probs=67.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe--CCHH-hHHHHHHHHHHhCCCCceEEEEcCCChhH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRE-LAKQVEKEFHESAPSLDTICVYGGTPISH 213 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~--Pt~~-La~Q~~~~l~~~~~~~~~~~~~g~~~~~~ 213 (475)
+.+.+.|++|+|||.++...+.... ..+..+.++. |.+. ...|+....... ++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~---------~~GkkVglI~aDt~RiaAvEQLk~yae~l--gi------------- 297 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH---------GKKKTVGFITTDHSRIGTVQQLQDYVKTI--GF------------- 297 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH---------HcCCcEEEEecCCcchHHHHHHHHHhhhc--CC-------------
Confidence 3578999999999987654443322 1244455444 2332 333433222211 12
Q ss_pred HHHHhhCCCCEE-EEccHHHHHHHHhCCCCCCCccEEEEecccccccc-CcHHHHHHHHHhCCCCCcEEEEeeecCh-hH
Q 011908 214 QMRALDYGVDAV-VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP-WI 290 (475)
Q Consensus 214 ~~~~~~~~~~Il-v~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~-~~~~~~~~il~~~~~~~~~l~~SAT~~~-~~ 290 (475)
.+. +.+|..+.+.+....- -.++++|+||-+=+.... .....+..++....+..-.+++|||... .+
T Consensus 298 ---------pv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 298 ---------EVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred ---------cEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 222 3356666555543110 125789999998764322 1234445555544444446779998654 44
Q ss_pred HHHHHHhc
Q 011908 291 RSLTNKYL 298 (475)
Q Consensus 291 ~~~~~~~~ 298 (475)
......|-
T Consensus 368 ~~i~~~F~ 375 (436)
T PRK11889 368 IEIITNFK 375 (436)
T ss_pred HHHHHHhc
Confidence 55555553
No 230
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.52 E-value=0.019 Score=52.19 Aligned_cols=43 Identities=14% Similarity=0.353 Sum_probs=24.5
Q ss_pred ccEEEEeccccccccC-cHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 246 VQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 246 l~~vIiDE~H~~~~~~-~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
.+++||||+|.+.... ....+..++.........+++|++.++
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 4689999999876431 234455555443222235666666443
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=96.52 E-value=0.01 Score=54.27 Aligned_cols=45 Identities=20% Similarity=0.438 Sum_probs=28.2
Q ss_pred CCccEEEEecccccccc-CcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~-~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
.+.+++|+|+.|.+... .....+-.+++.+..+...+++|++.+|
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 34568999999976533 2334455666655444456777777554
No 232
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.50 E-value=0.0079 Score=59.89 Aligned_cols=143 Identities=13% Similarity=0.242 Sum_probs=79.7
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH-hHHHHHHHHHHhCCCCce--EEEEcCCChhHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~-La~Q~~~~l~~~~~~~~~--~~~~g~~~~~~~ 214 (475)
-.++.|..|||||.++...++..+... ..+.+++++-|+.. |..-++..+......++. ..-....+. .
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~ 74 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--E 74 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--E
Confidence 367899999999999888777776552 13567898989887 666667777654432221 111111100 0
Q ss_pred HHHhhC-CCCEEEEcc-HHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCC--CCCcEEEEeeecChhH
Q 011908 215 MRALDY-GVDAVVGTP-GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNRQSMMFSATMPPWI 290 (475)
Q Consensus 215 ~~~~~~-~~~Ilv~T~-~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~--~~~~~l~~SAT~~~~~ 290 (475)
. .+.. +..|++..- +...+ ++ ....++++.+||+..+... .+..++..+. .....+++|.||+...
T Consensus 75 i-~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~ 144 (396)
T TIGR01547 75 I-KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPL 144 (396)
T ss_pred E-EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCc
Confidence 0 0111 334555543 21111 11 1334689999999987433 3444444443 2222588999987544
Q ss_pred HHHHHHhc
Q 011908 291 RSLTNKYL 298 (475)
Q Consensus 291 ~~~~~~~~ 298 (475)
..+...+.
T Consensus 145 ~w~~~~f~ 152 (396)
T TIGR01547 145 HWVKKRFI 152 (396)
T ss_pred cHHHHHHH
Confidence 44444444
No 233
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.50 E-value=0.013 Score=59.66 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=81.2
Q ss_pred HHHHHHhhhhhc-----C----CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 124 PIQKAVLEPAMQ-----G----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 124 ~~Q~~~i~~i~~-----~----~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
|+|+-++..+.. + +.+++.-+=|.|||......++..+.-. ...+.+++++++++.-|...++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 567777776652 1 2478889999999987665555555331 1347889999999999999999888
Q ss_pred HhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHH--hCCCCCCCccEEEEeccccccccCcHHHHHHHHHh
Q 011908 195 ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK--RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (475)
Q Consensus 195 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~--~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~ 272 (475)
.+............. +..... ...|..-..+.....+- .....-.+.+++|+||+|.+.+......+..-...
T Consensus 76 ~~i~~~~~l~~~~~~----~~~~~~-~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~ 150 (477)
T PF03354_consen 76 KMIEASPELRKRKKP----KIIKSN-KKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA 150 (477)
T ss_pred HHHHhChhhccchhh----hhhhhh-ceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc
Confidence 876432111100000 000000 01222111111111111 12222335789999999997654344444443444
Q ss_pred CCCCCcEEEEe
Q 011908 273 LPQNRQSMMFS 283 (475)
Q Consensus 273 ~~~~~~~l~~S 283 (475)
.++++++.+|
T Consensus 151 -r~~pl~~~IS 160 (477)
T PF03354_consen 151 -RPNPLIIIIS 160 (477)
T ss_pred -CCCceEEEEe
Confidence 3456555553
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=96.50 E-value=0.0098 Score=54.25 Aligned_cols=45 Identities=16% Similarity=0.370 Sum_probs=27.8
Q ss_pred CCccEEEEeccccccccC-cHHHHHHHHHhCCC-CCcEEEEeeecCh
Q 011908 244 SEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPP 288 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~-~~~~~~~il~~~~~-~~~~l~~SAT~~~ 288 (475)
.+.+++++||+|.+.... +...+..++..... ..+++++|++.+|
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 466889999999875321 23344455544433 3456778887655
No 235
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.47 E-value=0.012 Score=53.95 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.6
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||-.+
T Consensus 46 ~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL 62 (235)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999644
No 236
>PRK08727 hypothetical protein; Validated
Probab=96.43 E-value=0.023 Score=51.99 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=13.8
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|++|+|||-.+
T Consensus 43 ~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 43 WLYLSGPAGTGKTHLA 58 (233)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999644
No 237
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.37 E-value=0.024 Score=51.65 Aligned_cols=43 Identities=12% Similarity=0.303 Sum_probs=25.1
Q ss_pred CccEEEEeccccccccCcHHHHHHHHHhCCCCCc-EEEEeeecCh
Q 011908 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ-SMMFSATMPP 288 (475)
Q Consensus 245 ~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~-~l~~SAT~~~ 288 (475)
+.+++|+||+|.+... ....+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4567999999987543 23344444544333333 5667776543
No 238
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.34 E-value=0.05 Score=44.47 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.8
Q ss_pred EEEEccCCCChhHHh
Q 011908 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 588999999999754
No 239
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.32 E-value=0.084 Score=50.71 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=27.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 189 (475)
+.++++.|+||+|||..+ .++...+.. .|..|+++. ...|..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa-~aIa~~l~~--------~g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLS-NCIAKELLD--------RGKSVIYRT-ADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHH-HHHHHHHHH--------CCCeEEEEE-HHHHHHHH
Confidence 467999999999999755 344444433 255566654 44554444
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.30 E-value=0.095 Score=52.29 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=33.0
Q ss_pred ccEEEEeccccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhc
Q 011908 246 VQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (475)
Q Consensus 246 l~~vIiDE~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 298 (475)
.++||||.+-+... ...-.++..+.....++.-++.++||...+....+..+.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 37899999955321 113344555555555666688889988766555555543
No 241
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.29 E-value=0.018 Score=60.78 Aligned_cols=103 Identities=14% Similarity=0.198 Sum_probs=80.9
Q ss_pred cCcchhhH-HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011908 326 SMYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (475)
Q Consensus 326 ~~~~k~~~-l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 399 (475)
....|..+ +..++.....+.+++|.+|+++-+++.++.+.+ ++++..+||+++..+|...++...+|+.+|+|+
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVg 344 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVG 344 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEe
Confidence 34455443 344555556788999999999999988877643 478999999999999999999999999999999
Q ss_pred ec-ccccCCCCCCCCEEEecCCCCChhHHH
Q 011908 400 TD-VAARGLDVPNVDLVELVVLERKEVQFL 428 (475)
Q Consensus 400 T~-~l~~GiDip~~~~vI~~~~~~~~~~~~ 428 (475)
|. .+...+++.++.+||+-...+.+..+.
T Consensus 345 T~~ll~~~~~~~~l~lvVIDEaH~fg~~qr 374 (630)
T TIGR00643 345 THALIQEKVEFKRLALVIIDEQHRFGVEQR 374 (630)
T ss_pred cHHHHhccccccccceEEEechhhccHHHH
Confidence 96 444678888999999877777665543
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.25 E-value=0.058 Score=45.83 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=23.7
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
+++.|++|+|||..+...+.... . .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-~--------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-T--------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-h--------cCCEEEEEECCcch
Confidence 57899999999975544333332 1 25556766654443
No 243
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.21 E-value=0.027 Score=56.63 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=58.0
Q ss_pred HHHHHHHHHCCCCCCc-------HHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe
Q 011908 108 QDIVAALARRGISKLF-------PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~-------~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~ 180 (475)
+-|...|.+..-.+++ +-|.++|.. -+++-+++||..|||||.+++--+...+..++.... +..++++.
T Consensus 192 EvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~---~k~vlvl~ 267 (747)
T COG3973 192 EVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ---AKPVLVLG 267 (747)
T ss_pred HHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc---cCceEEEc
Confidence 3455666665433333 334443321 123458999999999999998777777766554332 44599999
Q ss_pred CCHHhHHHHHHHHHHhCC
Q 011908 181 PTRELAKQVEKEFHESAP 198 (475)
Q Consensus 181 Pt~~La~Q~~~~l~~~~~ 198 (475)
|.+.++.-+.+.+-+++.
T Consensus 268 PN~vFleYis~VLPeLGe 285 (747)
T COG3973 268 PNRVFLEYISRVLPELGE 285 (747)
T ss_pred CcHHHHHHHHHhchhhcc
Confidence 999999888877777653
No 244
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.20 E-value=0.034 Score=53.96 Aligned_cols=40 Identities=13% Similarity=0.299 Sum_probs=24.9
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
...++||+||+|.+... ....+..++...+....+++ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 45679999999987543 33445555655555555544 444
No 245
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.20 E-value=0.023 Score=61.11 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=55.2
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
..|++-|++++... ..+++|.|..|||||.+...-+...+.... -...++|+++-|+..|.++.+++.++.+
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-----v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-----ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 36899999998753 358999999999999887555544442211 1245799999999999999999998764
No 246
>PRK09183 transposase/IS protein; Provisional
Probab=96.19 E-value=0.066 Score=49.72 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=19.1
Q ss_pred hhcCCcEEEEccCCCChhHHhHHH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~ 156 (475)
+..+.++++.||+|+|||..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 456778999999999999766433
No 247
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.18 E-value=0.041 Score=54.45 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=26.7
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
-+-......+..+..++++++.|++|+|||..+
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 345556667777778899999999999999866
No 248
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.16 E-value=0.013 Score=62.26 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=54.2
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
.|++-|++++... ..+++|.|..|||||.+...-+...+.... -...++++++.|+..|.++.+++....+
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999998763 357899999999999887665555543211 1245699999999999999999987653
No 249
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.16 E-value=0.018 Score=65.39 Aligned_cols=124 Identities=20% Similarity=0.198 Sum_probs=78.5
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCC
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~ 200 (475)
++|+.|.++|.. .+.++++.|..|||||.+..--++..+... ....++++++=|+..|..+.+++.+.....
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 368999999973 577899999999999998877777766441 112459999999999999988887754311
Q ss_pred ceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCc--cEEEEecccc
Q 011908 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV--QFVVLDEADQ 256 (475)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l--~~vIiDE~H~ 256 (475)
- ........-.+.+..-...-|+|.+.+...+.+.....-++ .+=|.||...
T Consensus 73 ~----~~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 L----QQEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred H----hcCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 00001111112222224667999998875554432211122 3456887764
No 250
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.15 E-value=0.048 Score=54.94 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=30.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
+.+++.|++|+|||-.+ .++.+.+... ..+.+++++.+ ..+..++...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHH
Confidence 35889999999999543 4444444321 22455666554 566666555554
No 251
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.12 E-value=0.027 Score=60.14 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=53.9
Q ss_pred CcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
|++-|++++... ..+++|.|..|||||.+..--+...+.... .....+++++.|+..|.++.+++.+..+
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCG-----YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 788999998753 458999999999999877666655553211 1245699999999999999999988654
No 252
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.12 E-value=0.038 Score=55.95 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=28.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l 193 (475)
..+++.|++|+|||..+ .++.+.+.+. ..+..++++ +...+..+....+
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~------~~~~~v~yi-~~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK------NPNAKVVYV-TSEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh------CCCCeEEEE-EHHHHHHHHHHHH
Confidence 35899999999999654 4444444331 124445555 4445554443333
No 253
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.11 E-value=0.16 Score=49.28 Aligned_cols=132 Identities=16% Similarity=0.200 Sum_probs=72.8
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCC-HHhHHHHHHHHHHhCCCCceEEEEcCCChhHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT-RELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt-~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~ 214 (475)
++.+.+.||||.|||.+.+-.+....... +....++|.+.| |.=|....+.+.+.. ++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~------~~~kVaiITtDtYRIGA~EQLk~Ya~im-~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK------KKKKVAIITTDTYRIGAVEQLKTYADIM-GVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc------cCcceEEEEeccchhhHHHHHHHHHHHh-CCce------------
Confidence 56689999999999987543333222110 223334555544 444444444444433 2332
Q ss_pred HHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc-cccCcHHHHHHHHHhCCCCCcEEEEeeecCh-hHHH
Q 011908 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-LSVGFAEDVEVILERLPQNRQSMMFSATMPP-WIRS 292 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~-~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~-~~~~ 292 (475)
.++-+|.-|...+.. +.+.++|.||=+=+= .+......++.++....+..-.+.+|||-.. .+..
T Consensus 264 ---------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 264 ---------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 234455555555543 566788999977652 1222445556666655455557889999653 4455
Q ss_pred HHHHhcC
Q 011908 293 LTNKYLK 299 (475)
Q Consensus 293 ~~~~~~~ 299 (475)
....|-.
T Consensus 331 i~~~f~~ 337 (407)
T COG1419 331 IIKQFSL 337 (407)
T ss_pred HHHHhcc
Confidence 5555543
No 254
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.10 E-value=0.027 Score=60.54 Aligned_cols=71 Identities=17% Similarity=0.082 Sum_probs=54.7
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
.|++-|++++... ..+++|.|..|||||.+...-+...+.... -...++|+++-|+..|.++.+++.++.+
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999998754 358999999999999887555544442211 1245699999999999999999998764
No 255
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.021 Score=54.83 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=28.0
Q ss_pred CCcHHHHHHhhhhhcCC----cEEEEccCCCChhHHhHH
Q 011908 121 KLFPIQKAVLEPAMQGR----DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~----~~li~~~tGsGKT~~~~~ 155 (475)
.++|||...+..+.+.. ..++.||.|+|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 35799999999887653 378999999999976644
No 256
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.08 E-value=0.023 Score=53.32 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=35.9
Q ss_pred HhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 129 VLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 129 ~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.+.-+..+.-+++.|++|+|||..+...+.+.... .+..++++. .+.-..++..++...
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS-~E~~~~~~~~r~~~~ 81 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTIS-LEEPVVRTARRLLGQ 81 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEE-cccCHHHHHHHHHHH
Confidence 33445556678999999999997665444444321 255677765 344455555555443
No 257
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.08 E-value=0.025 Score=51.17 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=55.5
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (475)
.+.+.|++|+|||- .+.++.+.+.+. ..+.+++++.. .+......+.+..
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~------~~~~~v~y~~~-~~f~~~~~~~~~~---------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQ------HPGKRVVYLSA-EEFIREFADALRD---------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHH------CTTS-EEEEEH-HHHHHHHHHHHHT----------------------
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhc------cccccceeecH-HHHHHHHHHHHHc----------------------
Confidence 48999999999996 234444444331 22445666543 3444443333332
Q ss_pred hhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccC-cHHHHHHHHHhCC-CCCcEEEEeeecChh
Q 011908 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPW 289 (475)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~-~~~~~~~il~~~~-~~~~~l~~SAT~~~~ 289 (475)
+..+.+.+. +...+++++|..|.+.... ....+-.++..+. .+.++++.|..+|..
T Consensus 86 ---------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 ---------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ---------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ---------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 011111111 3467889999999876532 2233334444432 345666666566654
No 258
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.05 E-value=0.035 Score=55.44 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=25.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 188 (475)
.+++.|++|+|||..+ .++.+.+.+. ..+..++++.. ..+..+
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~------~~~~~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN------NPNAKVVYVSS-EKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh------CCCCcEEEEEH-HHHHHH
Confidence 4789999999999755 4455554331 12445666643 344333
No 259
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.03 E-value=0.05 Score=57.86 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=71.3
Q ss_pred cchhhHHHHHHH-hhcCCCcEEEEeCChHHHHHHHHHHHc--cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 011908 328 YEKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAA 404 (475)
Q Consensus 328 ~~k~~~l~~~~~-~~~~~~~~lVf~~~~~~~~~l~~~l~~--~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~ 404 (475)
..|...+..++. ....+.+++|.+|+++.+.++.+.+.+ +..+..+||+++..+|.+.+.+..+|+.+|+|+|...-
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 345554444333 344578999999999999999998865 35788999999999999999999999999999996322
Q ss_pred cCCCCCCCCEEEecCCC
Q 011908 405 RGLDVPNVDLVELVVLE 421 (475)
Q Consensus 405 ~GiDip~~~~vI~~~~~ 421 (475)
-..+.++..||+-+..
T Consensus 253 -~~p~~~l~liVvDEeh 268 (679)
T PRK05580 253 -FLPFKNLGLIIVDEEH 268 (679)
T ss_pred -cccccCCCEEEEECCC
Confidence 2456788888765543
No 260
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.02 E-value=0.047 Score=54.79 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=86.1
Q ss_pred CCCCcHHHHHHhhhhhc------C----CcEEEEccCCCChhHHhH-HHHHHHHHhhhhccCCCCCceEEEEeCCHHhHH
Q 011908 119 ISKLFPIQKAVLEPAMQ------G----RDMIGRARTGTGKTLAFG-IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~------~----~~~li~~~tGsGKT~~~~-~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
++.+-|||.-++-.+.. + +..+|..|-+-|||..+. +.....+..+ ..+....|++|+.+-+.
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~------~~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW------RSGAGIYILAPSVEQAA 132 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh------hcCCcEEEEeccHHHHH
Confidence 34788999999988872 1 247999999999997665 4444444443 34677999999999999
Q ss_pred HHHHHHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH---HHHHH--hCCCCCCCccEEEEeccccccccCc
Q 011908 188 QVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV---IDLIK--RNALNLSEVQFVVLDEADQMLSVGF 262 (475)
Q Consensus 188 Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l---~~~l~--~~~~~~~~l~~vIiDE~H~~~~~~~ 262 (475)
+.++.++....... ........ ..+-...+...- ...+- ....+-.+..+.|+||.|.+...+
T Consensus 133 ~~F~~ar~mv~~~~--------~l~~~~~~---q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~- 200 (546)
T COG4626 133 NSFNPARDMVKRDD--------DLRDLCNV---QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE- 200 (546)
T ss_pred HhhHHHHHHHHhCc--------chhhhhcc---ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-
Confidence 98888777654222 00000000 012222222211 11111 123334467799999999854431
Q ss_pred HHHHHHHHHhC--CCCCcEEEEeee
Q 011908 263 AEDVEVILERL--PQNRQSMMFSAT 285 (475)
Q Consensus 263 ~~~~~~il~~~--~~~~~~l~~SAT 285 (475)
..+..+..-+ .++.++++.|-.
T Consensus 201 -~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 201 -DMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred -HHHHHHHhhhccCcCceEEEEecC
Confidence 2333333322 356667777654
No 261
>PLN03025 replication factor C subunit; Provisional
Probab=96.00 E-value=0.1 Score=50.21 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
...+++|+||+|.+... -...+...+...++... ++++++.
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~-~il~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTR-FALACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCce-EEEEeCC
Confidence 35789999999997543 23333444444444444 4444443
No 262
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.00 E-value=0.029 Score=60.46 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=25.9
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
...+++||||+|+|... -...+.+++...+.+..+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 56889999999998654 3344555566655555555544
No 263
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.99 E-value=0.057 Score=63.85 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=45.9
Q ss_pred CCCcHHHHHHhhhhhcCC--cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHH
Q 011908 120 SKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~--~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 190 (475)
..|++.|++++..++.+. -++++|..|+|||.+. ..++..+..... ..+..++.++||-.-+.+..
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l-~~~~~~i~~~~~----~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML-ESRYKPVLQAFE----SEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH-HHHHHHHHHHHH----hcCCeEEEEeChHHHHHHHH
Confidence 379999999999988654 4788999999999644 222222221110 23678999999977766553
No 264
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.98 E-value=0.077 Score=44.95 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=37.2
Q ss_pred CCCccEEEEeccccccccC--cHHHHHHHHHhCCCCCcEEEEeeecChhHHHHH
Q 011908 243 LSEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~--~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~ 294 (475)
...++++|+||.=.....+ -...+..+++..|....+++.+-.+|+++...+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 4568999999998765554 355677788888777777776666777665544
No 265
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.91 E-value=0.038 Score=49.24 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=14.3
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.||+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5899999999999755
No 266
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.90 E-value=0.034 Score=52.55 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=25.2
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
.+-.++.+||+|| |...+..++--.-.+-.++++.||-
T Consensus 221 krkTilFiDEiHR-----FNksQQD~fLP~VE~G~I~lIGATT 258 (554)
T KOG2028|consen 221 KRKTILFIDEIHR-----FNKSQQDTFLPHVENGDITLIGATT 258 (554)
T ss_pred cceeEEEeHHhhh-----hhhhhhhcccceeccCceEEEeccc
Confidence 4445689999999 6655555543333455688888884
No 267
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.88 E-value=0.068 Score=54.72 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=71.6
Q ss_pred CcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHHcc--CCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 011908 327 MYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 327 ~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l 403 (475)
...|..++..++.. ...+++++|.+|++.-+.++.+.|.+. ..+..+||+++..+|.+.+.+..+|+.+|+|+|...
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 44566655544433 445789999999999999999888653 568899999999999999999999999999999643
Q ss_pred ccCCCCCCCCEEEecCC
Q 011908 404 ARGLDVPNVDLVELVVL 420 (475)
Q Consensus 404 ~~GiDip~~~~vI~~~~ 420 (475)
- =..++++..||+-..
T Consensus 87 l-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 87 L-FLPFKNLGLIIVDEE 102 (505)
T ss_pred H-cCcccCCCEEEEECC
Confidence 2 235678887876543
No 268
>PF13173 AAA_14: AAA domain
Probab=95.86 E-value=0.096 Score=42.81 Aligned_cols=37 Identities=8% Similarity=0.353 Sum_probs=24.7
Q ss_pred CccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 245 ~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
.-.++++||+|.+.+ +...++.+.... ++.+++ +|++
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii-~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKII-LTGS 97 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEE-EEcc
Confidence 556799999999865 566677776654 445444 4444
No 269
>PRK04195 replication factor C large subunit; Provisional
Probab=95.83 E-value=0.07 Score=54.54 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999755
No 270
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.81 E-value=0.049 Score=59.59 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=80.6
Q ss_pred ccCcchhhH-HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011908 325 TSMYEKPSI-IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 325 ~~~~~k~~~-l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLv 398 (475)
.....|..+ +..++.....+.+++|.+||..-|++.++.+.+ ..++..++|..+..++.++++.+.+|+.+|+|
T Consensus 480 dTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVI 559 (926)
T TIGR00580 480 DVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILI 559 (926)
T ss_pred CCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEE
Confidence 344555543 333445555678999999999999998887754 35678899999999999999999999999999
Q ss_pred Eec-ccccCCCCCCCCEEEecCCCCChhHHH
Q 011908 399 ATD-VAARGLDVPNVDLVELVVLERKEVQFL 428 (475)
Q Consensus 399 aT~-~l~~GiDip~~~~vI~~~~~~~~~~~~ 428 (475)
+|. .+...+.+.++.++|+-...+.+..+.
T Consensus 560 GTp~ll~~~v~f~~L~llVIDEahrfgv~~~ 590 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIIDEEQRFGVKQK 590 (926)
T ss_pred chHHHhhCCCCcccCCEEEeecccccchhHH
Confidence 996 555678889999999877777655444
No 271
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.79 E-value=0.047 Score=46.73 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=28.5
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
...+++||||+|.|... -...+.+.+..-+.+..++++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 56889999999998554 4556666666666667666665554
No 272
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.79 E-value=0.11 Score=48.46 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=15.0
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|||||.++
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46899999999999866
No 273
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.77 E-value=0.058 Score=54.52 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.5
Q ss_pred cEEEEccCCCChhHHhHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~ 157 (475)
..|+.||.|+|||.++.+.+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 37 SILLVGASGVGKTTCARIIS 56 (491)
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 58999999999998775443
No 274
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.76 E-value=0.046 Score=57.58 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=73.4
Q ss_pred CcchhhHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHHccC---CeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 011908 327 MYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAKSY---NCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (475)
Q Consensus 327 ~~~k~~~l~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~---~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~ 402 (475)
...|.+.+..++++. ..|+++||.+|.+..+..+...|...+ .+..+|+++++.+|.+.+.+..+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 357888888877654 568899999999999999999997644 5889999999999999999999999999999964
Q ss_pred cccCCCCCCCCEEEec
Q 011908 403 AARGLDVPNVDLVELV 418 (475)
Q Consensus 403 l~~GiDip~~~~vI~~ 418 (475)
+- =.-+++...||+.
T Consensus 250 Av-FaP~~~LgLIIvd 264 (665)
T PRK14873 250 AV-FAPVEDLGLVAIW 264 (665)
T ss_pred eE-EeccCCCCEEEEE
Confidence 22 2345566666654
No 275
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.097 Score=45.35 Aligned_cols=113 Identities=17% Similarity=0.114 Sum_probs=60.9
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (475)
=.++.||..||||.-.+..+.... ..|.++++..|-.. ..+ +.+.+.-..|..
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~---------~~g~~v~vfkp~iD----------~R~-~~~~V~Sr~G~~------- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYK---------EAGMKVLVFKPAID----------TRY-GVGKVSSRIGLS------- 58 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHH---------HcCCeEEEEecccc----------ccc-ccceeeeccCCc-------
Confidence 367899999999974444433333 23677888888432 111 111111111111
Q ss_pred hhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
..-++|-.+..+.+.+......+ ..++|.|||++- |...+-..+..+....-+-++-+.+
T Consensus 59 ---~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF-----~~~~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 59 ---SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQF-----FDEELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ---ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHh-----CCHHHHHHHHHHHhhcCCEEEEecc
Confidence 12455666666666665533322 288999999996 3444444444443332344444443
No 276
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.69 E-value=0.081 Score=52.92 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=23.0
Q ss_pred CccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 245 ~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
.-.++++||+|++. ...+..++..+. +..++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~----~~~q~~LL~~le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFN----KAQQDALLPHVE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhC----HHHHHHHHHHhh-cCcEEEEEeCC
Confidence 45689999999963 233444555553 34566666653
No 277
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.67 E-value=0.094 Score=52.76 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=23.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeC
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~P 181 (475)
+.+++.|++|+|||-.+ .++.+.+.+. ..+..++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~------~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQN------EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH
Confidence 35899999999999654 3444444331 12445666653
No 278
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.67 E-value=0.065 Score=51.52 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=25.9
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
...+++|+||+|.+........+..++...+.+.++++ +++
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Il-t~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFII-TAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEE-EcC
Confidence 35678999999987333234455566666666665554 444
No 279
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.66 E-value=0.052 Score=58.53 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=55.3
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
..|++-|.+++... ..+++|.|..|||||.+...-+...+.... -...++|+++-|+..|..+.+++.++.+
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999999764 458999999999999877665555443211 1235699999999999999999988754
No 280
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.064 Score=55.61 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
...+++||||+|++.... ...+.+.+...+....+| +++|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FI-LaTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFL-FATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEE-EEEC
Confidence 457899999999875442 334444555544444444 4444
No 281
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.64 E-value=0.19 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=16.6
Q ss_pred EEEEccCCCChhHHhHHHHHHHHH
Q 011908 139 MIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~ 162 (475)
+.|.|+||+|||++.-. ++..+.
T Consensus 784 LYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHH
Confidence 35999999999987633 445543
No 282
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.63 E-value=0.12 Score=46.97 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=34.0
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
..+.-.++.|++|+|||..++..+...+ + .+..+++++ +.+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~--------~g~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL-Q--------NGYSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-h--------CCCcEEEEe-CCCCHHHHHHHHHHh
Confidence 3455689999999999986544444433 2 255678887 444445656655544
No 283
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.077 Score=54.26 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=24.1
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
.+.+++||||+|++.... ...+.+.+...+++..+++.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 467899999999886543 233444555555555454433
No 284
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.60 E-value=0.081 Score=55.63 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
...+++||||+|+|.... ...+.+++..-+.+..+| +++|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FI-LaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFI-LATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEE-EEEC
Confidence 457899999999986543 233444455544444333 3444
No 285
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.016 Score=55.55 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=31.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCC--cHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 98 GLDISKLDISQDIVAALARRGISKL--FPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l--~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..++...-|++.|.+.+...-..+- -.+|. . -+|+++-||+|+|||+++
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNTK~h~a-----p--fRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANTKKHQA-----P--FRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhcccccccc-----h--hhheeeeCCCCCCchHHH
Confidence 3447777789998888775422110 01110 0 147999999999999754
No 286
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.58 E-value=0.066 Score=50.01 Aligned_cols=119 Identities=16% Similarity=0.238 Sum_probs=62.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHh-hhhcc--CCCCCceEEEEeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChh
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIK-FNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPIS 212 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~-~~~~~--~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~ 212 (475)
.+.++.|+||.|||.+. ..+.. ++... ....-+.+++-+|...-....|..+-..+. ..+ ......
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~-----~~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR-----PRDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC-----CCCCHH
Confidence 36999999999999733 33332 22111 111235566667877777777776655432 111 111111
Q ss_pred HHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHH---HHHhCCCCCcE-EEEeee
Q 011908 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV---ILERLPQNRQS-MMFSAT 285 (475)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~---il~~~~~~~~~-l~~SAT 285 (475)
... .+..+++.. -+++++||||.|.++..+ ...++. .++.+.+..++ ++.-+|
T Consensus 132 ~~~--------------~~~~~llr~-----~~vrmLIIDE~H~lLaGs-~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 132 KLE--------------QQVLRLLRR-----LGVRMLIIDEFHNLLAGS-YRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HHH--------------HHHHHHHHH-----cCCcEEEeechHHHhccc-HHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 100 011244443 356789999999987653 333443 34445444432 333455
No 287
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.51 E-value=0.079 Score=53.25 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=26.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 189 (475)
+.+++.|++|+|||-.+ .++.+.+.. .+..++++.. ..+..+.
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~--------~~~~v~yi~~-~~f~~~~ 184 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRE--------SGGKILYVRS-ELFTEHL 184 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCEEEeeH-HHHHHHH
Confidence 35899999999999644 344444432 1455666653 4444433
No 288
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.49 E-value=0.27 Score=51.05 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=47.8
Q ss_pred CcHHHHHHhhhhh---cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 122 LFPIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 122 l~~~Q~~~i~~i~---~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
+.|.=.+-|+++. +.+-.++.+|=|.|||.+..+.+...+.. .+..+++.+|...-+.++++.++..+.
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 4444444455444 34567889999999998776555544321 267799999999999998877666553
No 289
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.16 Score=52.73 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=15.0
Q ss_pred EEEEccCCCChhHHhHHH
Q 011908 139 MIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~ 156 (475)
.|+.|+.|+|||.++.+.
T Consensus 41 ~LFtGP~GvGKTTLAriL 58 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRIL 58 (700)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999876443
No 290
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.081 Score=54.81 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=23.8
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
....+++||||+|++... -...+.+.+...+.+..+|+.|
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 357889999999988543 2233344444444444444444
No 291
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.072 Score=53.86 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=36.9
Q ss_pred CCCccCCCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 93 SSKDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
....+..+|++.+--.++...|+.. .+. +|.+.+++-- ..-..+|++||+|||||+.+
T Consensus 502 F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK--~pd~~k~lGi-~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLELNMAILAPIK--RPDLFKALGI-DAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred ceecCCCChhhcccHHHHHHHHHHHHhhhcc--CHHHHHHhCC-CCCCceEEeCCCCccHHHHH
Confidence 3445677788888777777776543 222 3334444422 12346999999999999854
No 292
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.42 E-value=0.3 Score=45.62 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=23.6
Q ss_pred CCcHHHHHHhhhhh----cCC-cEEEEccCCCChhHHh
Q 011908 121 KLFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAF 153 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~-~~li~~~tGsGKT~~~ 153 (475)
-+++.+.+++..+. .+. .+++.|++|+|||..+
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 46677777776553 223 4889999999999754
No 293
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.47 Score=46.13 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=59.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe--CCHHh-HHHHHHHHHHhCCCCceEEEEcCCChhH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTREL-AKQVEKEFHESAPSLDTICVYGGTPISH 213 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~--Pt~~L-a~Q~~~~l~~~~~~~~~~~~~g~~~~~~ 213 (475)
+.+++.||+|+|||.++.-.+.... . .+.++.+++ |.+.- ..|+....... ++.+.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~-~--------~g~~V~lItaDtyR~gAveQLk~yae~l--gvpv~---------- 265 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLL-K--------QNRTVGFITTDTFRSGAVEQFQGYADKL--DVELI---------- 265 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-H--------cCCeEEEEeCCccCccHHHHHHHHhhcC--CCCEE----------
Confidence 4578999999999987655443332 2 144454444 23332 33443332221 12111
Q ss_pred HHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
...+|+.+...+.... ...+.++|+||=+=+... ......+..+.....+..-.+++|||...
T Consensus 266 -----------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~ 329 (407)
T PRK12726 266 -----------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS 329 (407)
T ss_pred -----------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH
Confidence 1234555555444311 124578899998865321 11233344444444333335677776543
No 294
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.39 E-value=0.031 Score=52.72 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=43.3
Q ss_pred CCCCcHHHHHHhhhhhcCC-cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHH
Q 011908 119 ISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~-~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 189 (475)
+..+++.|...+..+...+ +.+++|.||||||... -++...+ ...-+++.+-.|.+|.-++
T Consensus 155 ~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i---------~~~eRvItiEDtaELql~~ 216 (355)
T COG4962 155 FGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFI---------DSDERVITIEDTAELQLAH 216 (355)
T ss_pred cCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcC---------CCcccEEEEeehhhhccCC
Confidence 3468899999988877665 9999999999999622 2333222 2233788888888876553
No 295
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.38 E-value=0.095 Score=54.58 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=25.4
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
+...+++||||+|.+... -...+.+.+...+.+..+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 567899999999998543 2333444455555555555544
No 296
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.023 Score=56.87 Aligned_cols=18 Identities=33% Similarity=0.187 Sum_probs=15.1
Q ss_pred EEEEccCCCChhHHhHHH
Q 011908 139 MIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~ 156 (475)
.++.||.|+|||.++-+.
T Consensus 43 ~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 43 YIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 799999999999876443
No 297
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.34 E-value=0.17 Score=50.92 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=52.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (475)
+.-+++.|++|+|||...+..+.... + .+.+++++. +++-..|+..+...+..+.....+...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a-~--------~g~~vlYvs-~Ees~~qi~~ra~rlg~~~~~l~~~~e------- 142 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA-A--------AGGKVLYVS-GEESASQIKLRAERLGLPSDNLYLLAE------- 142 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEE-ccccHHHHHHHHHHcCCChhcEEEeCC-------
Confidence 34589999999999976654444332 1 255688877 455567777776665322221111110
Q ss_pred HHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011908 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~ 259 (475)
...+.+...+.. .+.+++|||+.+.+..
T Consensus 143 -----------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 -----------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred -----------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 112333333332 3567899999997653
No 298
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.33 E-value=0.12 Score=54.08 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=24.3
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
+...+++||||+|.+... -...+.+.+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 356789999999987543 2233444555545555455443
No 299
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.32 E-value=0.41 Score=47.53 Aligned_cols=130 Identities=9% Similarity=0.082 Sum_probs=64.0
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe--CCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~--Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (475)
-+++.|++|+|||.++.-.+. .+.+ .|.++++++ |.+.-|.++.+.+.+.. ++.+.....+...
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~--------~G~kV~lV~~D~~R~aA~eQLk~~a~~~-~vp~~~~~~~~dp---- 167 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR--------KGFKPCLVCADTFRAGAFDQLKQNATKA-RIPFYGSYTESDP---- 167 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--------CCCCEEEEcCcccchhHHHHHHHHhhcc-CCeEEeecCCCCH----
Confidence 378999999999976644333 2221 244566554 34555555444443331 3333322221111
Q ss_pred HHhhCCCCEEEEccHHH-HHHHHhCCCCCCCccEEEEecccccccc-CcHHHHHHHHHhCCCCCcEEEEeeecChhHHHH
Q 011908 216 RALDYGVDAVVGTPGRV-IDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l-~~~l~~~~~~~~~l~~vIiDE~H~~~~~-~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~ 293 (475)
..+ .+.+.... -..+++||||=+-+.-.. .....+..+.....+.--+++++||........
T Consensus 168 --------------~~i~~~~l~~~~--~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 168 --------------VKIASEGVEKFK--KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred --------------HHHHHHHHHHHH--hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 011 01111100 134677888877654321 133444444444545555777888876555555
Q ss_pred HHHh
Q 011908 294 TNKY 297 (475)
Q Consensus 294 ~~~~ 297 (475)
+..|
T Consensus 232 a~~F 235 (429)
T TIGR01425 232 AKAF 235 (429)
T ss_pred HHHH
Confidence 5444
No 300
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.29 E-value=0.12 Score=55.00 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=24.8
Q ss_pred CccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 245 ~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
+..++|+||+|++.. ..+..++..+ .+.+++++++|-.+
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~l-E~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWV-ENGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHh-cCceEEEEEecCCC
Confidence 456899999999632 2334444444 34567788877543
No 301
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.29 E-value=0.07 Score=50.96 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=42.6
Q ss_pred HHHHHCCCCCCcHHHHHHhhhhh-cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhH
Q 011908 112 AALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
+.+.+.+. +++.|.+.+..+. .+++++++|+||||||. ++-+++..+... ....+++.+-.+.+|.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~------~~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVAS------APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcC------CCCceEEEecCCcccc
Confidence 34555554 5677887776654 55789999999999996 445666655321 1134567766666663
No 302
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.28 E-value=0.12 Score=43.06 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCC---cEEEEecc--cccCCCCCC--CCEEEecCCCC
Q 011908 379 QSQRERTLSAFRDGRF---NILIATDV--AARGLDVPN--VDLVELVVLER 422 (475)
Q Consensus 379 ~~~r~~~~~~F~~g~~---~vLvaT~~--l~~GiDip~--~~~vI~~~~~~ 422 (475)
..+...+++.|++... .||+++.- +.+|||+|+ ++.||+.+.|.
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3455788889987543 69999976 999999997 67899887764
No 303
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.28 E-value=0.16 Score=51.04 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=82.9
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHH---
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM--- 215 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~--- 215 (475)
.+-|.-+++||+...++++.+.+.. +-.|.++|.+-+.+-|.|.+.++. .++++++.+.+|........
T Consensus 360 ~V~QelvF~gse~~K~lA~rq~v~~-------g~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 360 TVDQELVFCGSEKGKLLALRQLVAS-------GFKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred hhhhhheeeecchhHHHHHHHHHhc-------cCCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHH
Confidence 4456678999999998888888755 457789999999999999999997 67789999999987655543
Q ss_pred HHhhCC-CCEEEEccHHHHHHHHhCCCCCCCccEEEEecccc
Q 011908 216 RALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (475)
Q Consensus 216 ~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~ 256 (475)
..++.+ ..++||| +.+.++ ++|.++.+||-+..-.
T Consensus 432 ~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 432 ERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 333334 8999999 888765 7899999999976664
No 304
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.28 E-value=0.055 Score=56.98 Aligned_cols=93 Identities=20% Similarity=0.237 Sum_probs=74.6
Q ss_pred eccCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHHc--cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 011908 324 ATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (475)
Q Consensus 324 ~~~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~--~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT 400 (475)
..+.+.|.+++..++.+ +.+|+++||.+|.+.....+.+.|.. +.++..+|+++++.+|.+...+..+|+.+|+|.|
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 34566788888887765 56688999999999988888888865 4689999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEe
Q 011908 401 DVAARGLDVPNVDLVEL 417 (475)
Q Consensus 401 ~~l~~GiDip~~~~vI~ 417 (475)
..+- =.-+++.-.+|+
T Consensus 304 RSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 304 RSAL-FLPFKNLGLIIV 319 (730)
T ss_pred chhh-cCchhhccEEEE
Confidence 5321 223456666664
No 305
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.26 E-value=0.15 Score=50.72 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
.++++.|++|+|||.+. ..++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999754 3344443
No 306
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.1 Score=51.14 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.3
Q ss_pred EEEEccCCCChhHHhHH
Q 011908 139 MIGRARTGTGKTLAFGI 155 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~ 155 (475)
+++.||.|+|||..+..
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 68999999999976633
No 307
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.21 E-value=0.014 Score=50.35 Aligned_cols=123 Identities=19% Similarity=0.178 Sum_probs=53.0
Q ss_pred EEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhH-H-HHH
Q 011908 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH-Q-MRA 217 (475)
Q Consensus 140 li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~-~-~~~ 217 (475)
++.|+-|-|||.+.-+++...+.. ....+++.+|+.+-++..++.+...+..+.... ...... . ...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~---~~~~~~~~~~~~ 69 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKE---EKKKRIGQIIKL 69 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccc---cccccccccccc
Confidence 478999999997654444333311 124699999999988887776655433221111 000000 0 000
Q ss_pred hhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
...+..|-+..|+.+... ....+++|||||=.+ -...+..++ .....++||.|...
T Consensus 70 ~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll----~~~~~vv~stTi~G 125 (177)
T PF05127_consen 70 RFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLL----RRFPRVVFSTTIHG 125 (177)
T ss_dssp ---CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHH----CCSSEEEEEEEBSS
T ss_pred ccccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHH----hhCCEEEEEeeccc
Confidence 011245556666544322 123478999999985 333444443 33457788888753
No 308
>PTZ00293 thymidine kinase; Provisional
Probab=95.20 E-value=0.17 Score=45.01 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=24.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
=-++.||++||||.-.+-.+.... ..+..++++-|..
T Consensus 6 i~vi~GpMfSGKTteLLr~i~~y~---------~ag~kv~~~kp~~ 42 (211)
T PTZ00293 6 ISVIIGPMFSGKTTELMRLVKRFT---------YSEKKCVVIKYSK 42 (211)
T ss_pred EEEEECCCCChHHHHHHHHHHHHH---------HcCCceEEEEecc
Confidence 357899999999964444433333 2266688888854
No 309
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.20 E-value=0.22 Score=43.41 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=73.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHH-HHHHHHHHhCCCCceEEEEcCCChhH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK-QVEKEFHESAPSLDTICVYGGTPISH 213 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~-Q~~~~l~~~~~~~~~~~~~g~~~~~~ 213 (475)
....+++-+++|.|||.+++--++.++ +.|.+++++.=.+--.. --...+.. .+++... ..|.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~---------g~G~~V~ivQFlKg~~~~GE~~~l~~-l~~v~~~--~~g~~~~~ 88 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV---------GHGKKVGVVQFIKGAWSTGERNLLEF-GGGVEFH--VMGTGFTW 88 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH---------HCCCeEEEEEEecCCCccCHHHHHhc-CCCcEEE--ECCCCCcc
Confidence 345789999999999998877777776 44788888763332100 01122222 2222222 22221110
Q ss_pred HHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCc--HHHHHHHHHhCCCCCcEEEEeeecChhHH
Q 011908 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIR 291 (475)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~--~~~~~~il~~~~~~~~~l~~SAT~~~~~~ 291 (475)
.. ....--.......+.... ..+.-..+++||+||.-...+.++ ...+..++...|....+|+.--.+|+++.
T Consensus 89 ~~----~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Li 163 (191)
T PRK05986 89 ET----QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELI 163 (191)
T ss_pred cC----CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 00 000000000011111111 112235688999999998777664 45666777777666655555555566555
Q ss_pred HHH
Q 011908 292 SLT 294 (475)
Q Consensus 292 ~~~ 294 (475)
..+
T Consensus 164 e~A 166 (191)
T PRK05986 164 EAA 166 (191)
T ss_pred HhC
Confidence 544
No 310
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.17 E-value=0.057 Score=54.93 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.9
Q ss_pred cEEEEccCCCChhHHhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
..++.||.|+|||.++-+.
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999877443
No 311
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.14 E-value=0.1 Score=49.89 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=27.8
Q ss_pred CCCcHHHHHHhhhhhc----CC---cEEEEccCCCChhHHhHH
Q 011908 120 SKLFPIQKAVLEPAMQ----GR---DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~----~~---~~li~~~tGsGKT~~~~~ 155 (475)
..++|||..++..+.. ++ -.++.||.|+||+..+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 3578999999987663 32 389999999999986644
No 312
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.11 E-value=0.61 Score=43.41 Aligned_cols=130 Identities=12% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeC-C-H-HhHHHHHHHHHHhCCCCceEEEEcCCChh
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-T-R-ELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~P-t-~-~La~Q~~~~l~~~~~~~~~~~~~g~~~~~ 212 (475)
+..+.+.|++|+|||..+...+.... . .+..+.++.- + + ....|+....... ++.+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~-~--------~~~~v~~i~~D~~ri~~~~ql~~~~~~~--~~~~~--------- 134 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFH-G--------KKKTVGFITTDHSRIGTVQQLQDYVKTI--GFEVI--------- 134 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-H--------cCCeEEEEecCCCCHHHHHHHHHHhhhc--CceEE---------
Confidence 35689999999999986654433321 1 1334444442 2 2 4555554433322 11111
Q ss_pred HHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecCh-hH
Q 011908 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPP-WI 290 (475)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~-~~ 290 (475)
...+++.+...+..-. ...+++++|||-+=+... ......+..++....+..-.+++|||... .+
T Consensus 135 ------------~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 135 ------------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred ------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 1123444444433211 123578999999976432 11334445555555455457789998654 55
Q ss_pred HHHHHHhc
Q 011908 291 RSLTNKYL 298 (475)
Q Consensus 291 ~~~~~~~~ 298 (475)
...+..|-
T Consensus 202 ~~~~~~f~ 209 (270)
T PRK06731 202 IEIITNFK 209 (270)
T ss_pred HHHHHHhC
Confidence 56665553
No 313
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.08 E-value=0.08 Score=54.64 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=26.3
Q ss_pred CCCccEEEEeccccccccC-cHHHHHHHHHhCCC-CCcEEEEeeecCh
Q 011908 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPP 288 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~-~~~~~~~il~~~~~-~~~~l~~SAT~~~ 288 (475)
+.+++++|||++|.+.... ....+-.+++.+.. +.++|+.|-..|.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~ 422 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPK 422 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChH
Confidence 3457889999999875432 22334445544433 4556654444443
No 314
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.07 E-value=0.037 Score=56.45 Aligned_cols=46 Identities=26% Similarity=0.319 Sum_probs=39.0
Q ss_pred CCCCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhh
Q 011908 119 ISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKF 164 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~ 164 (475)
+++|+++|.+.+.++. +|+-.++..|||+|||+..+-+++.++..+
T Consensus 13 Py~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 13 PYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 4589999999988765 578889999999999999888888887654
No 315
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.05 E-value=0.14 Score=52.82 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=23.2
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
....+++||||+|++.... ...+.+.+...+.+..+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3567899999999975432 223334444444444444443
No 316
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.03 E-value=0.22 Score=45.75 Aligned_cols=39 Identities=23% Similarity=0.081 Sum_probs=26.4
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~ 180 (475)
..|.-.++.|++|+|||..++-.+.+.+.. .+..++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEe
Confidence 345568999999999997665555544422 155577777
No 317
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.01 E-value=0.087 Score=50.38 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=43.4
Q ss_pred HHHHHHCCCCCCcHHHHHHhhhh-hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 111 VAALARRGISKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 111 ~~~l~~~~~~~l~~~Q~~~i~~i-~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
++.|.+.|. +++.|.+.+..+ ..++++++.|+||||||. ++.+++..+... ....+++++-.+.++
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 445555565 457788888754 456789999999999994 445565554221 123457777777766
No 318
>PRK06620 hypothetical protein; Validated
Probab=95.00 E-value=0.078 Score=47.69 Aligned_cols=39 Identities=3% Similarity=0.202 Sum_probs=22.7
Q ss_pred ccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 246 VQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 246 l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
.+++++||+|++- ...+-.+++.+..+...+++|||-+|
T Consensus 86 ~d~lliDdi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p 124 (214)
T PRK06620 86 YNAFIIEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKS 124 (214)
T ss_pred CCEEEEeccccch----HHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 4679999999642 23444555555444445666666443
No 319
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.18 Score=48.72 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=26.6
Q ss_pred CcHHHHHHhhhhhcC--C---cEEEEccCCCChhHHhHHHH
Q 011908 122 LFPIQKAVLEPAMQG--R---DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~--~---~~li~~~tGsGKT~~~~~~~ 157 (475)
++|||...+..+... + ..++.||.|+||+..+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 367888888877643 2 37899999999998774433
No 320
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.96 E-value=0.53 Score=47.24 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=59.6
Q ss_pred hhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEE-cCCC
Q 011908 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTP 210 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~-g~~~ 210 (475)
-+..|.-+++.|++|+|||..++-.+.+.... .+..++++. .+.-..|+..++.....++....+. |...
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~~a~~--------~g~~v~~fS-lEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~ 260 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAENVALR--------EGKPVLFFS-LEMSAEQLGERLLASKSGINTGNIRTGRFN 260 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEE-CCCCHHHHHHHHHHHHcCCCHHHHhcCCCC
Confidence 33344558999999999997665444444322 244566665 4555666666654433333322222 2222
Q ss_pred hhHH------HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011908 211 ISHQ------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 211 ~~~~------~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~ 259 (475)
.... ...+. +.++.|. |.+.+.....+-......+++||||=.|.+..
T Consensus 261 ~~~~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 261 DSDFNRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 1111 11122 2344543 33344443332111123588999999887653
No 321
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.95 E-value=0.53 Score=44.04 Aligned_cols=131 Identities=14% Similarity=0.154 Sum_probs=65.3
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe-C-CHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA-P-TRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~-P-t~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (475)
-+++.|++|+|||.++.-.+.... ..+.+++++. . .+.-+.+....+.+.. ++.++..+...
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~---------~~g~~V~li~~D~~r~~a~~ql~~~~~~~---~i~~~~~~~~~---- 137 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLK---------KQGKSVLLAAGDTFRAAAIEQLEEWAKRL---GVDVIKQKEGA---- 137 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH---------hcCCEEEEEeCCCCCHHHHHHHHHHHHhC---CeEEEeCCCCC----
Confidence 467789999999987655443332 2255566655 3 3443333333332222 22222222110
Q ss_pred HHhhCCCCEEEEccHH-HHHHHHhCCCCCCCccEEEEecccccccc-CcHHHHHHHHHhCC------CCCcEEEEeeecC
Q 011908 216 RALDYGVDAVVGTPGR-VIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLP------QNRQSMMFSATMP 287 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~-l~~~l~~~~~~~~~l~~vIiDE~H~~~~~-~~~~~~~~il~~~~------~~~~~l~~SAT~~ 287 (475)
.|.. ....+... ...+++++|||=+-+.... .....+..+.+..+ ++--+++++||..
T Consensus 138 ------------dp~~~~~~~l~~~--~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 138 ------------DPAAVAFDAIQKA--KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred ------------CHHHHHHHHHHHH--HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 0111 11222111 1245788999988775421 12334555554443 4556889999976
Q ss_pred hhHHHHHHHhc
Q 011908 288 PWIRSLTNKYL 298 (475)
Q Consensus 288 ~~~~~~~~~~~ 298 (475)
.........+.
T Consensus 204 ~~~~~~~~~f~ 214 (272)
T TIGR00064 204 QNALEQAKVFN 214 (272)
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 322
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.93 E-value=0.1 Score=49.56 Aligned_cols=67 Identities=27% Similarity=0.411 Sum_probs=42.2
Q ss_pred HHHHHHCCCCCCcHHHHHHhhhhh-cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhH
Q 011908 111 VAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 111 ~~~l~~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
++.|.+.|. +++.|.+.+..+. .+++++++|+||||||. ++-+++..+... ....+++.+-.+.++.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~------~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKN------DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhcc------CCCceEEEECCchhhc
Confidence 344555554 4566666666544 55789999999999996 435565555321 1134577777777763
No 323
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.19 Score=51.61 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=23.8
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
....+++||||+|++... -...+.+.+...+....+++.|
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 456789999999997543 2233444445444445444444
No 324
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.12 Score=55.48 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.4
Q ss_pred EEEEccCCCChhHHhHH
Q 011908 139 MIGRARTGTGKTLAFGI 155 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~ 155 (475)
.|+.||.|+|||.++-+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999986643
No 325
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.87 E-value=0.16 Score=52.96 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=23.7
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
....+++||||+|++... -...+.+.+..-+.+..+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 457899999999987543 2234444454444444444333
No 326
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.84 E-value=0.13 Score=53.16 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=76.3
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC----CCceEEEEcCCChh
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPIS 212 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~----~~~~~~~~g~~~~~ 212 (475)
+..++..|=-.|||.... +++..+... -.|.++++.+|.+.-++.+++++...+. +-.+....| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE-
Confidence 457888999999998655 555544321 2378899999999999999988877432 212222222 110
Q ss_pred HHHHHhhCC--CCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 213 HQMRALDYG--VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 213 ~~~~~~~~~--~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
.-.+.++ ..|.+++ . -..+..--..++++|+|||+.+.+..+.. +.-.+.. .+++++++|.|-
T Consensus 326 --~i~f~nG~kstI~FaS-----a-rntNsiRGqtfDLLIVDEAqFIk~~al~~-ilp~l~~--~n~k~I~ISS~N 390 (738)
T PHA03368 326 --SFSFPDGSRSTIVFAS-----S-HNTNGIRGQDFNLLFVDEANFIRPDAVQT-IMGFLNQ--TNCKIIFVSSTN 390 (738)
T ss_pred --EEEecCCCccEEEEEe-----c-cCCCCccCCcccEEEEechhhCCHHHHHH-HHHHHhc--cCccEEEEecCC
Confidence 0011112 2455553 1 11122223468999999999875542222 2233332 378899999883
No 327
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.82 E-value=0.076 Score=53.90 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|||||..+
T Consensus 217 ~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIA 233 (512)
T ss_pred cceEEECCCCCcHHHHH
Confidence 56999999999999754
No 328
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.80 E-value=0.23 Score=42.62 Aligned_cols=51 Identities=25% Similarity=0.420 Sum_probs=35.6
Q ss_pred CCccEEEEeccccccccCc--HHHHHHHHHhCCCCCcEEEEeeecChhHHHHH
Q 011908 244 SEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~--~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~ 294 (475)
..+++||+||+-...+.++ ...+..++...|++..+++..-.+|+.+...+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 5688999999997766553 44666778877777766665555666555544
No 329
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.79 E-value=0.16 Score=53.08 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=15.4
Q ss_pred EEEEccCCCChhHHhHHHH
Q 011908 139 MIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~ 157 (475)
.|+.|+.|+|||.++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998774443
No 330
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.79 E-value=0.077 Score=54.70 Aligned_cols=19 Identities=32% Similarity=0.172 Sum_probs=15.5
Q ss_pred cEEEEccCCCChhHHhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
..|+.||.|+|||..+...
T Consensus 40 A~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999866443
No 331
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.76 E-value=0.54 Score=45.11 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
...+++++||+|.+... ....+..++...+....+++.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 34679999999987543 2334455555555555555443
No 332
>PRK05973 replicative DNA helicase; Provisional
Probab=94.75 E-value=0.12 Score=47.01 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHCCCC----------CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCC
Q 011908 103 KLDISQDIVAALARRGIS----------KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~----------~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~ 172 (475)
.+++++.+-+.-.+.||. ..|| ..+...-+..|.-++|.|++|+|||..++..+.+.+. +
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---------~ 91 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK---------S 91 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---------c
Confidence 345555555555555553 2344 2224444555666899999999999877666665552 2
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHh
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
|..++|++- ++-..|+.+++..+
T Consensus 92 Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 92 GRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCeEEEEEE-eCCHHHHHHHHHHc
Confidence 566777753 44467777777765
No 333
>PHA00350 putative assembly protein
Probab=94.70 E-value=0.33 Score=47.63 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=17.7
Q ss_pred EEEEccCCCChhHHhHH-HHHHHH
Q 011908 139 MIGRARTGTGKTLAFGI-PILDKI 161 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~-~~l~~~ 161 (475)
.++.|..|||||+.++. .++.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 57899999999998775 355454
No 334
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.70 E-value=0.1 Score=50.20 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=29.4
Q ss_pred hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
+..+++++++|+||||||. ++-+++..+ ....+++.+=.+.+|.
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~i---------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREI---------PAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhC---------CCCCeEEEecCCCccc
Confidence 3456899999999999995 445666555 2244566655555543
No 335
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.67 E-value=1.2 Score=45.03 Aligned_cols=20 Identities=25% Similarity=0.089 Sum_probs=16.0
Q ss_pred cEEEEccCCCChhHHhHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~ 157 (475)
-+.+.||||+|||.+....+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 47899999999998765444
No 336
>PRK06904 replicative DNA helicase; Validated
Probab=94.65 E-value=0.68 Score=47.01 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=61.2
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcC--CCh
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG--TPI 211 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~--~~~ 211 (475)
..|.-+++.|.+|.|||..++-.+.+.... .+..++|+ ..+.-..|+..++-....++....+..| .+.
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a~~--------~g~~Vl~f-SlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~ 289 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAAMA--------SEKPVLVF-SLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQ 289 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHh--------cCCeEEEE-eccCCHHHHHHHHHHhhCCCCHHHhccCCCCCH
Confidence 334447889999999997554344333322 14445554 5566677877776665544443322222 222
Q ss_pred hHH------HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 212 SHQ------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 212 ~~~------~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
.+. ...+....++.|- |+..+.....+-......+++||||=.+.+.
T Consensus 290 ~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 290 QDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 211 1122223445552 4455543332211112357899999888664
No 337
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.64 E-value=0.16 Score=53.47 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=37.7
Q ss_pred ccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 246 VQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 246 l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
--++|+|..|++.+......++.+++..|++.+.++.|=+-|+
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3589999999999988888899999999999999998888654
No 338
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.63 E-value=0.064 Score=46.69 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=27.1
Q ss_pred hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 189 (475)
+.+++++++.|++|+|||..+... ...+.. .|..++++ +...|..+.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai-~~~~~~--------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAI-ANEAIR--------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHH-HHHHHH--------TT--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHH-HHHhcc--------CCcceeEe-ecCceeccc
Confidence 345678999999999999876444 433333 25556665 444555443
No 339
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.61 E-value=0.17 Score=56.82 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=78.2
Q ss_pred eccCcchhhHHH-HHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEE
Q 011908 324 ATSMYEKPSIIG-QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (475)
Q Consensus 324 ~~~~~~k~~~l~-~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vL 397 (475)
......|..+.. .+......+.+++|.+|+.+-+.++++.+.+ .+.+..++|..+..++.++++...+|..+|+
T Consensus 628 a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIV 707 (1147)
T PRK10689 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDIL 707 (1147)
T ss_pred cCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEE
Confidence 344455654322 2223344678999999999999999888754 2467789999999999999999999999999
Q ss_pred EEec-ccccCCCCCCCCEEEecCCCCChhHHH
Q 011908 398 IATD-VAARGLDVPNVDLVELVVLERKEVQFL 428 (475)
Q Consensus 398 vaT~-~l~~GiDip~~~~vI~~~~~~~~~~~~ 428 (475)
|+|. .+...+++.++..+|+-...+.+..+.
T Consensus 708 VgTp~lL~~~v~~~~L~lLVIDEahrfG~~~~ 739 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHK 739 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEEechhhcchhHH
Confidence 9995 455567778999988766666654443
No 340
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.59 E-value=0.29 Score=47.81 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=26.0
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
....++||||+|.+... -...+.+.+...+.+..++++|..
T Consensus 140 ~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 140 GGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred CCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 46789999999987543 344455555555555555555544
No 341
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.12 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=16.4
Q ss_pred EEEEccCCCChhHHhHHHHHHHH
Q 011908 139 MIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
.++.||+|+|||.++.. +...+
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 59999999999987643 33333
No 342
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.57 E-value=0.27 Score=47.30 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=23.5
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
...+++|+||++.|... -...+...+..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 57899999999997542 3344444444444444444443
No 343
>CHL00181 cbbX CbbX; Provisional
Probab=94.56 E-value=0.54 Score=44.38 Aligned_cols=20 Identities=35% Similarity=0.230 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCChhHHhHH
Q 011908 136 GRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~ 155 (475)
+.++++.||+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34689999999999987743
No 344
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.53 E-value=0.21 Score=47.59 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=18.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
++.+++.|++|+|||..+. ++...+
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 3579999999999997653 444444
No 345
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.37 Score=46.33 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=26.5
Q ss_pred cHHHHHHhhhhhcC--C---cEEEEccCCCChhHHhHHHH
Q 011908 123 FPIQKAVLEPAMQG--R---DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 123 ~~~Q~~~i~~i~~~--~---~~li~~~tGsGKT~~~~~~~ 157 (475)
+|||...|..+... + ..++.||.|+|||..+...+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 68888888887743 2 37899999999998764443
No 346
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.52 E-value=1.2 Score=44.06 Aligned_cols=125 Identities=13% Similarity=0.129 Sum_probs=63.2
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe--CCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~--Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (475)
-+++.||+|+|||.++.-.+...... .|..+.++. +.+..+..+.....+.. ++....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~--------~G~~V~Lit~Dt~R~aA~eQLk~yAe~l-gvp~~~----------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH--------MGKSVSLYTTDNYRIAAIEQLKRYADTM-GMPFYP----------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh--------cCCeEEEecccchhhhHHHHHHHHHHhc-CCCeee-----------
Confidence 37889999999998775554433222 244454444 33444444333332221 221110
Q ss_pred HHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc-ccCcHHHHHHHHHhCC---CCCcEEEEeeecCh-hH
Q 011908 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFAEDVEVILERLP---QNRQSMMFSATMPP-WI 290 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~-~~~~~~~~~~il~~~~---~~~~~l~~SAT~~~-~~ 290 (475)
+..+..+...+.. .+.++|+||=+-+.. +......+..++.... +.-.++++|||..+ .+
T Consensus 285 ----------~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~ 349 (432)
T PRK12724 285 ----------VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT 349 (432)
T ss_pred ----------hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH
Confidence 0112223333331 456889999765532 2223344455555442 22357899999876 44
Q ss_pred HHHHHHh
Q 011908 291 RSLTNKY 297 (475)
Q Consensus 291 ~~~~~~~ 297 (475)
......|
T Consensus 350 ~~~~~~f 356 (432)
T PRK12724 350 LTVLKAY 356 (432)
T ss_pred HHHHHHh
Confidence 4444444
No 347
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.50 E-value=0.057 Score=52.10 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=30.4
Q ss_pred hhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhH
Q 011908 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
.+..++++++.|+||||||. ++-+++..+ ....+++.+-.+.+|.
T Consensus 158 ~v~~~~nilI~G~tGSGKTT-ll~aLl~~i---------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTT-MSKTLISAI---------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHH-HHHHHHccc---------CCCCCEEEECCCcccc
Confidence 34467899999999999995 435555544 2234566676776653
No 348
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.44 Score=50.63 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=36.6
Q ss_pred ccHHHHHHHHhCCCCCCCccEEEEecccccccc-CcHHHHHHHHHhCCCCCcEEEEeeecChh-HHHHHHHh
Q 011908 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPW-IRSLTNKY 297 (475)
Q Consensus 228 T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~-~~~~~~~~il~~~~~~~~~l~~SAT~~~~-~~~~~~~~ 297 (475)
+|+.+.+.+.. +.+.++|+||=+=+.... .....+..+.....+...+++++||.... +......|
T Consensus 250 ~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 250 DAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 56666565553 445688999988764321 12223333333334455688889986543 33444444
No 349
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.42 E-value=0.098 Score=55.97 Aligned_cols=61 Identities=21% Similarity=0.376 Sum_probs=51.4
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----c-CCeee-ecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----S-YNCEP-LHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~-~~~~~-lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l 403 (475)
++.++++.+||..-+.++++.|.. + ..+.. +||.|+..+++..+++|.+|..+|||+|+.+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 578999999999988888888753 1 22222 9999999999999999999999999999754
No 350
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.35 E-value=0.41 Score=46.87 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=50.8
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (475)
+.-+++.|++|+|||..++..+.... . .+.+++++.- ++-..|+..+..++.-......+...
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a-~--------~g~~VlYvs~-EEs~~qi~~Ra~rlg~~~~~l~l~~e------- 144 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA-K--------RGGKVLYVSG-EESPEQIKLRADRLGISTENLYLLAE------- 144 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEEC-CcCHHHHHHHHHHcCCCcccEEEEcc-------
Confidence 34589999999999976644443332 1 2456788765 34456776666554322111111111
Q ss_pred HHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
...+.+...+.. .+.+++|||+++.+.
T Consensus 145 -----------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 -----------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred -----------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 112334444432 256789999999774
No 351
>PRK10867 signal recognition particle protein; Provisional
Probab=94.33 E-value=0.93 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=16.3
Q ss_pred cEEEEccCCCChhHHhHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPIL 158 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l 158 (475)
-+++.|++|+|||.++.-.+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 378899999999987754443
No 352
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.32 E-value=0.23 Score=49.24 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|||||..+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 56999999999999755
No 353
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.28 E-value=0.19 Score=41.82 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=39.4
Q ss_pred eecCCCCHHHHHHHHHHHhcCC-CcEEEEecccccCCCCCC--CCEEEecCCCC
Q 011908 372 PLHGDISQSQRERTLSAFRDGR-FNILIATDVAARGLDVPN--VDLVELVVLER 422 (475)
Q Consensus 372 ~lh~~~~~~~r~~~~~~F~~g~-~~vLvaT~~l~~GiDip~--~~~vI~~~~~~ 422 (475)
++..+....+...+++.|++.. ..||+++..+.+|+|+|+ ++.||+...|.
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444455556788999998754 379999988999999996 57888877664
No 354
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.26 Score=49.95 Aligned_cols=17 Identities=41% Similarity=0.360 Sum_probs=14.5
Q ss_pred EEEEccCCCChhHHhHH
Q 011908 139 MIGRARTGTGKTLAFGI 155 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~ 155 (475)
.++.||+|+|||..+-+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999986643
No 355
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.27 E-value=0.74 Score=41.84 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=32.3
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.+..+++.|++|+|||..+...+.+.+.+ +..++++.- .....++.+....+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 35668999999999997665444444422 445666653 44555655554443
No 356
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.1 Score=54.17 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=16.3
Q ss_pred cEEEEccCCCChhHHhHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~ 157 (475)
.+|+.||.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999998775443
No 357
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.22 E-value=0.22 Score=47.59 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=26.5
Q ss_pred CCcHHHHHHhhhhh----cCC---cEEEEccCCCChhHHhHHHH
Q 011908 121 KLFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~----~~~---~~li~~~tGsGKT~~~~~~~ 157 (475)
.++|||...+..+. .++ -.++.||.|.||+..+...+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a 46 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFS 46 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 45678888877665 332 38999999999997664433
No 358
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.20 E-value=0.31 Score=50.30 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=80.8
Q ss_pred hHHHHHHHhhcCCCcEEEEeCChHHHHH----HHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cccc
Q 011908 332 SIIGQLITEHAKGGKCIVFTQTKRDADR----LAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VAAR 405 (475)
Q Consensus 332 ~~l~~~~~~~~~~~~~lVf~~~~~~~~~----l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~l~~ 405 (475)
-++..++.....|.|+..-.||.=-|++ +.++|.. ++.+..+.|.++...|.++++...+|+++++|.|- .+..
T Consensus 299 VA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 299 VALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 3455666677789999999999655554 4444432 67899999999999999999999999999999995 5568
Q ss_pred CCCCCCCCEEEecCCCCChhHHH
Q 011908 406 GLDVPNVDLVELVVLERKEVQFL 428 (475)
Q Consensus 406 GiDip~~~~vI~~~~~~~~~~~~ 428 (475)
.+++.+.-.||+-.-.+++..|.
T Consensus 379 ~V~F~~LgLVIiDEQHRFGV~QR 401 (677)
T COG1200 379 KVEFHNLGLVIIDEQHRFGVHQR 401 (677)
T ss_pred ceeecceeEEEEeccccccHHHH
Confidence 99999999999988899988886
No 359
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.19 E-value=0.19 Score=49.90 Aligned_cols=18 Identities=33% Similarity=0.233 Sum_probs=15.3
Q ss_pred EEEEccCCCChhHHhHHH
Q 011908 139 MIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~ 156 (475)
.++.||.|+|||.++.+.
T Consensus 41 ~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVF 58 (397)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 889999999999877443
No 360
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.18 E-value=0.22 Score=51.90 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=15.2
Q ss_pred EEEEccCCCChhHHhHHH
Q 011908 139 MIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~ 156 (475)
+|+.|+.|+|||.++.+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999877543
No 361
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.16 E-value=0.47 Score=46.11 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=26.5
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
....++||||+|.|... -...+.+.+...+.+..++++|..
T Consensus 140 g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEECC
Confidence 46789999999998543 344455566665555555555533
No 362
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.14 E-value=0.53 Score=49.67 Aligned_cols=138 Identities=21% Similarity=0.243 Sum_probs=78.1
Q ss_pred CcHHHHH---HhhhhhcCC--cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 122 LFPIQKA---VLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 122 l~~~Q~~---~i~~i~~~~--~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.|..|.+ .+..++... -+++.|+-|=|||.+.-+++. .+... .....+++.+|+.+-.+..++.+.+-
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~------~~~~~iiVTAP~~~nv~~Lf~fa~~~ 284 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARL------AGSVRIIVTAPTPANVQTLFEFAGKG 284 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHh------cCCceEEEeCCCHHHHHHHHHHHHHh
Confidence 3455555 555555543 488999999999988776663 33221 11357999999999888777665553
Q ss_pred CCCC--ceEEEEcC-CChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC
Q 011908 197 APSL--DTICVYGG-TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (475)
Q Consensus 197 ~~~~--~~~~~~g~-~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~ 273 (475)
+..+ +..+.... ... .....+...|-+-+|.... ..-+++|||||=.+ -...+..++...
T Consensus 285 l~~lg~~~~v~~d~~g~~---~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l~~~~ 347 (758)
T COG1444 285 LEFLGYKRKVAPDALGEI---REVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKLLRRF 347 (758)
T ss_pred HHHhCCccccccccccce---eeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHHHhhc
Confidence 3211 11110000 000 0000111234455554322 11567999999976 345555555443
Q ss_pred CCCCcEEEEeeecC
Q 011908 274 PQNRQSMMFSATMP 287 (475)
Q Consensus 274 ~~~~~~l~~SAT~~ 287 (475)
+.++||.|+.
T Consensus 348 ----~rv~~sTTIh 357 (758)
T COG1444 348 ----PRVLFSTTIH 357 (758)
T ss_pred ----CceEEEeeec
Confidence 5788999974
No 363
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.11 E-value=0.13 Score=54.13 Aligned_cols=18 Identities=33% Similarity=0.239 Sum_probs=15.0
Q ss_pred EEEEccCCCChhHHhHHH
Q 011908 139 MIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~ 156 (475)
.|+.||.|+|||.++-+.
T Consensus 43 YLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 689999999999877443
No 364
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.11 E-value=0.46 Score=47.01 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=51.7
Q ss_pred HHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH
Q 011908 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 109 ~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 188 (475)
.+++.+++ .+..+-..|.++.-..-.|.- -++|=.|||||.+.+.-+.. + +.+....++++.+-|+.|+.+
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-l------h~knPd~~I~~Tfftk~L~s~ 221 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-L------HSKNPDSRIAFTFFTKILAST 221 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-H------hcCCCCceEEEEeehHHHHHH
Confidence 34444443 233455667777655555544 67899999999755333222 2 223457789999999999999
Q ss_pred HHHHHHHhC
Q 011908 189 VEKEFHESA 197 (475)
Q Consensus 189 ~~~~l~~~~ 197 (475)
+.....+++
T Consensus 222 ~r~lv~~F~ 230 (660)
T COG3972 222 MRTLVPEFF 230 (660)
T ss_pred HHHHHHHHH
Confidence 887766644
No 365
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.10 E-value=0.61 Score=46.06 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
...+++||||+|+|... ....+.+.+..-+++. ++++++|
T Consensus 116 ~~~kViiIDead~m~~~-aanaLLk~LEep~~~~-~fIL~a~ 155 (394)
T PRK07940 116 GRWRIVVIEDADRLTER-AANALLKAVEEPPPRT-VWLLCAP 155 (394)
T ss_pred CCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCC-eEEEEEC
Confidence 56789999999998543 2333444444443344 4555555
No 366
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.10 E-value=0.21 Score=51.07 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=25.3
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
....+++||||+|++... -...+.+.+...++...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 457889999999998543 2334445555555555555544
No 367
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.04 E-value=0.2 Score=44.52 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=22.8
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEE
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~ 281 (475)
.-+.+.+|+||+|.|.+. -...++..+.-..+.+++.+
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhh
Confidence 356889999999987543 34444444444444444433
No 368
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.02 E-value=0.13 Score=47.67 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=35.6
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
++.++++.|++|+|||..+. ++...+.+ ...-++.+++.+|..++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~-Ai~~~l~~---------~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAI-AIGNELLK---------AGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH---------cCCeEEEEEHHHHHHHHHHHHhc
Confidence 56789999999999998774 34444433 23346667788888877666654
No 369
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.01 E-value=0.13 Score=51.29 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=30.2
Q ss_pred CcHHHHHHhhhhhcCCc--EEEEccCCCChhHHhHHHHHHHHH
Q 011908 122 LFPIQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~--~li~~~tGsGKT~~~~~~~l~~~~ 162 (475)
+.+.|.+.+..+++..+ +|+.||||||||.+ +.++++.+.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 36788888888776654 78999999999964 466666653
No 370
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.01 E-value=0.99 Score=38.79 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=62.4
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH-hHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~-La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (475)
+.+-...|-|||.+++=-++.++ +.|.+|+++.=.+- -..-=...++.+ +++.... .+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~---------G~G~rV~ivQFlKg~~~~GE~~~l~~l-~~~~~~~--~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA---------GHGMRVLIVQFLKGGRYSGELKALKKL-PNVEIER--FGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH---------CTT--EEEEESS--SS--HHHHHHGGG-T--EEEE----TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH---------hCCCEEEEEEEecCCCCcCHHHHHHhC-CeEEEEE--cCCcccccCCC
Confidence 34455678899998877777776 66888999875554 111112223332 3332221 11111100000
Q ss_pred hhCCCCEEEEccHHHHHHHHh--CCCCCCCccEEEEeccccccccCc--HHHHHHHHHhCCCCCcEEEEeeecChhHHHH
Q 011908 218 LDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~--~~~~~~~l~~vIiDE~H~~~~~~~--~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~ 293 (475)
.. .+ .......+.. ..+.-..+++||+||+-...+.++ ...+..++...|....+++.--.+|+.+...
T Consensus 74 ~~--~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 74 EE--ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp HH--HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred cH--HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 00 01 1111122221 122235689999999987776664 4566677777777776666555566665554
Q ss_pred H
Q 011908 294 T 294 (475)
Q Consensus 294 ~ 294 (475)
+
T Consensus 147 A 147 (172)
T PF02572_consen 147 A 147 (172)
T ss_dssp -
T ss_pred C
Confidence 4
No 371
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.99 E-value=0.28 Score=50.93 Aligned_cols=20 Identities=35% Similarity=0.235 Sum_probs=15.9
Q ss_pred cEEEEccCCCChhHHhHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~ 157 (475)
..|+.||.|+|||.++-+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999998774443
No 372
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.95 E-value=0.44 Score=46.78 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=18.1
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
.++++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999754 4455444
No 373
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.92 E-value=0.14 Score=46.99 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=37.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
+..+++.|++|||||..++..+...+. .|..+++++ +.+-..|+.+.+..+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~---------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH---------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 456899999999999877666665552 256678877 5566777777776653
No 374
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.87 E-value=0.33 Score=44.35 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=33.5
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
+.-+++.|++|+|||..+...+...+. ++..++++.-- +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~---------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK---------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh---------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 345899999999999766555544442 25567776653 4446666666665
No 375
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.85 E-value=0.42 Score=41.94 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=16.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
..++.||.|+|||..+ ..+...+
T Consensus 16 ~~L~~G~~G~gkt~~a-~~~~~~l 38 (188)
T TIGR00678 16 AYLFAGPEGVGKELLA-LALAKAL 38 (188)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 4899999999999755 3333444
No 376
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.73 E-value=0.18 Score=52.25 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=84.3
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHH-HHHHHhC
Q 011908 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE-KEFHESA 197 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~-~~l~~~~ 197 (475)
..+|+|.+.++.+... +.+.+..++-+|||.+.+..+...+ . .....++++.||..+|.++. .+|..++
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i-~-------~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI-D-------QDPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE-E-------eCCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 6789999999988765 4689999999999986544443333 2 22455899999999999987 4565554
Q ss_pred CCCce--EEEEc----CCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccc--CcHHHHHHH
Q 011908 198 PSLDT--ICVYG----GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV--GFAEDVEVI 269 (475)
Q Consensus 198 ~~~~~--~~~~g----~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~--~~~~~~~~i 269 (475)
..... ..+.. ........+.+. +..+.++.... ...+.-..++++++||++.+... +-++-+...
T Consensus 88 ~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la 160 (557)
T PF05876_consen 88 RASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANS------PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELA 160 (557)
T ss_pred HhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCC------CcccccCCcCEEEEechhhccccCccCCCHHHHH
Confidence 32221 01111 011111111222 22333333110 11222345789999999998432 122222222
Q ss_pred H---HhCCCCCcEEEEeeecCh
Q 011908 270 L---ERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 270 l---~~~~~~~~~l~~SAT~~~ 288 (475)
. ..+ .....+++..||..
T Consensus 161 ~~R~~tf-~~~~K~~~~STPt~ 181 (557)
T PF05876_consen 161 EKRTKTF-GSNRKILRISTPTI 181 (557)
T ss_pred HHHHhhh-ccCcEEEEeCCCCC
Confidence 2 222 23446667777654
No 377
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.70 E-value=0.43 Score=50.00 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=15.2
Q ss_pred cEEEEccCCCChhHHhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
..|+.||.|+|||.++...
T Consensus 40 a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999876443
No 378
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.68 E-value=0.73 Score=39.72 Aligned_cols=52 Identities=25% Similarity=0.420 Sum_probs=38.0
Q ss_pred CccEEEEeccccccccC--cHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHH
Q 011908 245 EVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296 (475)
Q Consensus 245 ~l~~vIiDE~H~~~~~~--~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~ 296 (475)
.+++||+||.-..+..+ -...+..++...|.+.++|+..-..|+.+...+..
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 58899999998766554 35677788888888887777666677776665543
No 379
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.66 E-value=0.33 Score=52.09 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=26.0
Q ss_pred ccEEEEeccccccccCc----HHHHHHHHHhCCCCCcEEEEeeecChh
Q 011908 246 VQFVVLDEADQMLSVGF----AEDVEVILERLPQNRQSMMFSATMPPW 289 (475)
Q Consensus 246 l~~vIiDE~H~~~~~~~----~~~~~~il~~~~~~~~~l~~SAT~~~~ 289 (475)
-.+++|||+|.+...+- ......++..+-....+.++.||-+++
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E 326 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHH
Confidence 35799999999864431 223334444333445577777775544
No 380
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=93.65 E-value=0.37 Score=46.96 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=20.4
Q ss_pred hhcCCcEEEEccCCCChhHHhHHHHHHHH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
|-.|+..+|.||.|+|||..+ ..+.+.+
T Consensus 166 IGkGQR~lIvgppGvGKTTLa-K~Ian~I 193 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLL-QNIANSI 193 (416)
T ss_pred cccCceEEEeCCCCCChhHHH-HHHHHHH
Confidence 446788999999999999633 3444444
No 381
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.64 E-value=0.3 Score=51.05 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=15.7
Q ss_pred cEEEEccCCCChhHHhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
..|+.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3889999999999877443
No 382
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.35 Score=49.58 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCccCCCccCCCCCHHHHHHHHHC---CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 94 SKDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+.+..+|++++=-+++++.|++. ....+-.+.+-.+ ..-+.+|+-||+|||||+++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 455677888888667887777643 2223333332221 22356999999999999866
No 383
>PRK07004 replicative DNA helicase; Provisional
Probab=93.54 E-value=0.57 Score=47.46 Aligned_cols=114 Identities=15% Similarity=0.085 Sum_probs=56.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEE-EcCCChhH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISH 213 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~-~g~~~~~~ 213 (475)
.|.-+++.|.+|+|||..++-.+.+...+ .+..+++. -.+.-..|+..++-....++....+ .|..+..+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~--------~~~~v~~f-SlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e 282 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE--------YGLPVAVF-SMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDED 282 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH--------cCCeEEEE-eCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHH
Confidence 33457899999999997654444433322 14445555 4455556666665443323332212 22222221
Q ss_pred H------HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 214 Q------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 214 ~------~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
. ...+. ...+.|- |+..+....++-......+++||||=.+.+.
T Consensus 283 ~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 283 WPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 1 12222 2455553 4444433332211112357899999988775
No 384
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.53 E-value=2.6 Score=40.45 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCccEEEEecccccccc-CcHHHHHHHHHhC------CCCCcEEEEeeecChhHHHHHHHh
Q 011908 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERL------PQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~-~~~~~~~~il~~~------~~~~~~l~~SAT~~~~~~~~~~~~ 297 (475)
.++++||||=+-++... .....+..+.+.+ .+.-.+++++||........+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 56788999999875422 1234444544322 233357999999765444444444
No 385
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.50 E-value=0.38 Score=52.00 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.6
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|||||..+
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999755
No 386
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.49 E-value=0.42 Score=45.75 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=25.3
Q ss_pred CcHHHHHHhhhhh----cCC---cEEEEccCCCChhHHhHHHH
Q 011908 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 122 l~~~Q~~~i~~i~----~~~---~~li~~~tGsGKT~~~~~~~ 157 (475)
++|||...+..+. .++ -.++.||.|.||+..+...+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 4577777776654 333 37899999999998764443
No 387
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.48 E-value=0.14 Score=53.16 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=88.8
Q ss_pred CCcHHHHHHhhhhhcCCc----------EEEEcc--CCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH
Q 011908 121 KLFPIQKAVLEPAMQGRD----------MIGRAR--TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~----------~li~~~--tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 188 (475)
.+...|.+++-..++..+ .||-.. +|-|.|++. .++...++ ...++|++.-+..|-.+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAg--iIfeNyLk--------GRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAG--IIFENYLK--------GRKRALWFSVSSDLKFD 333 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEE--EEehhhhc--------ccceeEEEEeccccccc
Confidence 577889998876654321 344333 555666543 33444433 25679999999999998
Q ss_pred HHHHHHHhCC-CCceEEEEcCCChhHHHHHhhC--CCCEEEEccHHHHHHHH---------------hCCCCCCCccEEE
Q 011908 189 VEKEFHESAP-SLDTICVYGGTPISHQMRALDY--GVDAVVGTPGRVIDLIK---------------RNALNLSEVQFVV 250 (475)
Q Consensus 189 ~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~~Ilv~T~~~l~~~l~---------------~~~~~~~~l~~vI 250 (475)
..+.+..... ++.+..+.- .+...-...... .-.++++|+..|.-.-. -..-.| -++||
T Consensus 334 AERDL~DigA~~I~V~alnK-~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~f--eGvIv 410 (1300)
T KOG1513|consen 334 AERDLRDIGATGIAVHALNK-FKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDF--EGVIV 410 (1300)
T ss_pred hhhchhhcCCCCccceehhh-cccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcc--ceeEE
Confidence 8888887653 444333210 000000000000 14799999876653221 111111 36899
Q ss_pred Eeccccccc---------cCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 251 LDEADQMLS---------VGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 251 iDE~H~~~~---------~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
+||||+--+ ...+..+..+-.++ ++.+++.-|||-
T Consensus 411 fDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASATG 454 (1300)
T KOG1513|consen 411 FDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASATG 454 (1300)
T ss_pred ehhhhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeeccC
Confidence 999998543 12566677776777 566799999993
No 388
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.44 E-value=0.22 Score=43.70 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=28.0
Q ss_pred HHHCCCCCCcHHHHHHhhhhh-cCCcEEEEccCCCChhHHh
Q 011908 114 LARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 114 l~~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~ 153 (475)
|.+.|. +++.|.+.+.... .+..+++.|+||||||...
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 444444 5677888877654 5678999999999999643
No 389
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.37 E-value=0.79 Score=49.52 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.0
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.+.++.||+|+|||.++
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999765
No 390
>PRK05748 replicative DNA helicase; Provisional
Probab=93.36 E-value=1 Score=45.56 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=58.2
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEE-EcCCChhH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISH 213 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~-~g~~~~~~ 213 (475)
.|.-+++.|.+|.|||..++-.+.+...+ .+..++++ ..+.-..|+..++.....++....+ .|.....+
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~--------~g~~v~~f-SlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e 272 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATK--------TDKNVAIF-SLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDD 272 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHh--------CCCeEEEE-eCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHH
Confidence 33458999999999997655444433322 14445554 5555667777776543333332212 22222111
Q ss_pred H------HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 214 Q------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 214 ~------~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
. ...+. +.++.|- |++.+...+.+-.....++++||||=.|.+.
T Consensus 273 ~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 273 WPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1 11122 2345543 3444544332211111257899999999774
No 391
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.35 E-value=2 Score=42.88 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=17.0
Q ss_pred cEEEEccCCCChhHHhHHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILD 159 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~ 159 (475)
-+++.|++|+|||.++.-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3788999999999877554443
No 392
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.35 E-value=0.39 Score=45.22 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=15.6
Q ss_pred cEEEEccCCCChhHHhHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~ 157 (475)
.+++.||||+|||.+....+
T Consensus 196 vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999998764433
No 393
>PRK08840 replicative DNA helicase; Provisional
Probab=93.32 E-value=1.3 Score=44.82 Aligned_cols=122 Identities=17% Similarity=0.096 Sum_probs=60.4
Q ss_pred HHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEE-
Q 011908 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY- 206 (475)
Q Consensus 128 ~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~- 206 (475)
+.+.-+..|.-+++.|.+|.|||..++-.+.+.... .+..++|.. .+.-..|+..++-....++...-+.
T Consensus 209 ~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--------~~~~v~~fS-lEMs~~ql~~Rlla~~s~v~~~~i~~ 279 (464)
T PRK08840 209 KKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--------QDKPVLIFS-LEMPAEQLMMRMLASLSRVDQTKIRT 279 (464)
T ss_pred HhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--------CCCeEEEEe-ccCCHHHHHHHHHHhhCCCCHHHHhc
Confidence 333334444557889999999997664444443322 144465554 4455677776665543333322222
Q ss_pred cCCChhHH------HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 207 GGTPISHQ------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 207 g~~~~~~~------~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
|..+..+. ...+....++.|- |...+.....+-......+++||||=.|.+.
T Consensus 280 ~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 280 GQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 22222221 1122122344443 3334433322211112257899999988764
No 394
>PRK08506 replicative DNA helicase; Provisional
Probab=93.31 E-value=0.93 Score=46.10 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=59.2
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEE-EcCCChhH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISH 213 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~-~g~~~~~~ 213 (475)
.|.-+++.|.+|.|||..++-.+.+.. . .+..++++ ..+.-..|+..++.....++...-+ .|..+..+
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~-~--------~g~~V~~f-SlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e 260 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKAL-N--------QDKGVAFF-SLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDE 260 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHH-h--------cCCcEEEE-eCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHH
Confidence 334578999999999976655555443 1 24456655 4456667777776554333332211 22222211
Q ss_pred H------HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 214 Q------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 214 ~------~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
. ...+.. ..+.|- |+..+...+++-......+++||||=.+.+.
T Consensus 261 ~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 261 WERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 1 112222 344442 3444544333211112357899999998764
No 395
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.27 E-value=0.27 Score=48.21 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=27.7
Q ss_pred CccEEEEeccccccccC-cHHHHHHHHHhCCCC-CcEEEEeeecChhH
Q 011908 245 EVQFVVLDEADQMLSVG-FAEDVEVILERLPQN-RQSMMFSATMPPWI 290 (475)
Q Consensus 245 ~l~~vIiDE~H~~~~~~-~~~~~~~il~~~~~~-~~~l~~SAT~~~~~ 290 (475)
++++++||.++.+.... .....-.+++.+..+ .|+++.|-.+|..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 78889999999876542 333344455555433 36666665555443
No 396
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=1.9 Score=42.19 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=17.2
Q ss_pred cEEEEccCCCChhHHhHHHHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
++++-|+||+|||.+. -.++..+
T Consensus 44 n~~iyG~~GTGKT~~~-~~v~~~l 66 (366)
T COG1474 44 NIIIYGPTGTGKTATV-KFVMEEL 66 (366)
T ss_pred cEEEECCCCCCHhHHH-HHHHHHH
Confidence 5899999999999765 3344444
No 397
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=93.25 E-value=1.4 Score=37.94 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=72.3
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (475)
+.+--..|-|||.+++=-++.++ +.|.+++|+.=.+--..+=...+.+.++++.... .|..........
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa---------G~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~--~g~~~~~~~~~~ 92 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA---------GQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVR--CDLPRCLDTPHL 92 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh---------cCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEE--CCCCCeeeCCCc
Confidence 44556678899998887777776 6688898887433321111122222333333222 121100000000
Q ss_pred hCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCc--HHHHHHHHHhCCCCCcEEEEeeecChhHHHHH
Q 011908 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (475)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~--~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~ 294 (475)
.. .+. ......+.... ..+.-..++++|+||.-...+.++ ...+..+++..|++..+++.--.+|+++...+
T Consensus 93 ~~-~~~--~~~~~~~~~a~-~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 93 DE-SEK--KALQELWQYTQ-AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CH-HHH--HHHHHHHHHHH-HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 00 000 00011111111 111235688999999998776664 45667778888777766666666666655543
No 398
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=93.25 E-value=0.84 Score=43.08 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=64.6
Q ss_pred CCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCC-ChhHHHHHhhCC-CCEEEEccHHHHHHHHhCCCCCCCccEE
Q 011908 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT-PISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~l~~v 249 (475)
++..+++.+|+.+..+|.+..+++.++......+.... ...++...+++| .+|+|+| ..+++.. -+.+++++
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILERGV-Tfp~vdV~ 377 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILERGV-TFPNVDVF 377 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhhccc-ccccceEE
Confidence 46679999999999999999998888766655555443 445566777776 8999999 7787654 58899999
Q ss_pred EEeccccccc
Q 011908 250 VLDEADQMLS 259 (475)
Q Consensus 250 IiDE~H~~~~ 259 (475)
|++--|++..
T Consensus 378 Vlgaeh~vfT 387 (441)
T COG4098 378 VLGAEHRVFT 387 (441)
T ss_pred EecCCccccc
Confidence 9999998754
No 399
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.21 E-value=0.99 Score=45.52 Aligned_cols=113 Identities=17% Similarity=0.072 Sum_probs=57.2
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEE-cCCChhH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISH 213 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~-g~~~~~~ 213 (475)
.|.-+++.|++|+|||..++-.+.+.... .+..++++. .+.-..|+.+++.....++....+. |.....+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~S-lEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~ 264 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFS-LEMSAEQLAMRMLSSESRVDSQKLRTGKLSDED 264 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEe-CcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHH
Confidence 33457999999999997554444443322 144466554 4555666666665544344322222 2222211
Q ss_pred H------HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 214 Q------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 214 ~------~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
. ...+.+ ..+.|- |++.+...+.+-... ..+++||||=.+.+.
T Consensus 265 ~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 265 WEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 1 112222 334442 344554433321111 247899999888764
No 400
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.15 E-value=0.56 Score=44.42 Aligned_cols=46 Identities=24% Similarity=0.153 Sum_probs=38.2
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHh
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~ 163 (475)
.+...|+.|..-++++....-++..||-|+|||+.+...+..++..
T Consensus 125 ~I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~ 170 (348)
T COG1702 125 SIIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA 170 (348)
T ss_pred ceEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh
Confidence 3556789999999999887678899999999999887777777644
No 401
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.13 E-value=0.65 Score=50.25 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
..+.+++.||+|||||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3467999999999999654
No 402
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.82 Score=42.38 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=58.9
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (475)
.+|+-||+|+||++.+-..+- ..+ ...+-+.+..|...|.-+-.++..
T Consensus 168 giLLyGPPGTGKSYLAKAVAT------------EAn-STFFSvSSSDLvSKWmGESEkLVk------------------- 215 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVAT------------EAN-STFFSVSSSDLVSKWMGESEKLVK------------------- 215 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHh------------hcC-CceEEeehHHHHHHHhccHHHHHH-------------------
Confidence 389999999999974411111 112 367777777777665443333211
Q ss_pred hhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccC---cHHHHHH----HHHhC----CCCCcEEEEeeec
Q 011908 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG---FAEDVEV----ILERL----PQNRQSMMFSATM 286 (475)
Q Consensus 218 ~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~---~~~~~~~----il~~~----~~~~~~l~~SAT~ 286 (475)
.|..+.+. +.-++|.|||++.+.... -...-+. +|-++ +.+-.++++.||-
T Consensus 216 -------------nLFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 216 -------------NLFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred -------------HHHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 01111221 234568999999776432 1122222 22222 2345699999999
Q ss_pred ChhHHHH
Q 011908 287 PPWIRSL 293 (475)
Q Consensus 287 ~~~~~~~ 293 (475)
+||..+-
T Consensus 278 iPw~LDs 284 (439)
T KOG0739|consen 278 IPWVLDS 284 (439)
T ss_pred CchhHHH
Confidence 9987553
No 403
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.09 E-value=0.14 Score=46.58 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=35.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
+..+++.|++|+|||..++..+.+.+.+. |..+++++ +.+-..++.+.++.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~--------ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF--------GEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH--------T--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc--------CCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 45689999999999987766666655321 44477766 4555677777777664
No 404
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.09 E-value=0.57 Score=45.87 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=20.5
Q ss_pred hhhcCCcEEEEccCCCChhHHhHHHHHHHH
Q 011908 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
.+-.|+.+++.||+|+|||..+ ..+...+
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~-~~i~~~I 192 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLL-QKIAQAI 192 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHH-HHHHHhh
Confidence 3456788999999999999643 3344433
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.07 E-value=2.2 Score=36.76 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=27.9
Q ss_pred CCccEEEEeccccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHh
Q 011908 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~ 297 (475)
.+.+++|+|....... ......+..+........-++.++|.-..........+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 3567799999886421 11233333333333344456677776544444444333
No 406
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.01 E-value=0.13 Score=46.99 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=11.5
Q ss_pred EEEEccCCCChhH
Q 011908 139 MIGRARTGTGKTL 151 (475)
Q Consensus 139 ~li~~~tGsGKT~ 151 (475)
+++.|+.|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 3789999999996
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.93 E-value=1.5 Score=43.56 Aligned_cols=129 Identities=13% Similarity=0.144 Sum_probs=60.4
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH-HhHHHHHHHHHHhCCCCceEEEEcCCChhHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR-ELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~-~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (475)
.-+.+.|++|+|||.+....+...+... +.....++.+.+. .=+.+....+.+.. ++.+..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~------~~~~v~~i~~d~~rigalEQL~~~a~il-Gvp~~~----------- 253 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRH------GADKVALLTTDSYRIGGHEQLRIYGKLL-GVSVRS----------- 253 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEecCCcchhHHHHHHHHHHHc-CCceec-----------
Confidence 4488999999999986643333222211 1122345555542 32333333333333 232221
Q ss_pred HHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccc-CcHHHHHHHHHhCCCCCcEEEEeeecChh-HHHH
Q 011908 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPW-IRSL 293 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~-~~~~~~~~il~~~~~~~~~l~~SAT~~~~-~~~~ 293 (475)
+.++..+...+.. +.+.++++||.+=+.-.. .....+..+.....+...++++|||.... +...
T Consensus 254 ----------v~~~~dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 254 ----------IKDIADLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ----------CCCHHHHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 1223333233322 566788999986332110 01122222222122334578899997654 3334
Q ss_pred HHHh
Q 011908 294 TNKY 297 (475)
Q Consensus 294 ~~~~ 297 (475)
...|
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 4444
No 408
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.91 E-value=0.28 Score=47.37 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=26.3
Q ss_pred CcHHHHHHhhhhh----cCC---cEEEEccCCCChhHHhHHHH
Q 011908 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 122 l~~~Q~~~i~~i~----~~~---~~li~~~tGsGKT~~~~~~~ 157 (475)
++|||...+..+. +++ -.++.||.|.||+..+...+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 5678888887765 333 37899999999998764433
No 409
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=1.2 Score=44.72 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHhhhh----hc---C-----CcEEEEccCCCChhHHhH
Q 011908 103 KLDISQDIVAALARRGISKLFPIQKAVLEPA----MQ---G-----RDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i----~~---~-----~~~li~~~tGsGKT~~~~ 154 (475)
.++.+++.++.+...|...-.+.-.+.+..- .+ . -.+++.||.|||||..|+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA 556 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA 556 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH
Confidence 4567777777777776654444444444321 11 1 248999999999997543
No 410
>PHA00729 NTP-binding motif containing protein
Probab=92.88 E-value=0.37 Score=43.32 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.3
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999755
No 411
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.78 E-value=0.45 Score=44.22 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=69.0
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~ 214 (475)
.+.-.++.|.+|.|||..++-.+.+.... .+..+++++. +.-..++..++-....++...-+..+.-...+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~--------~~~~vly~Sl-Em~~~~l~~R~la~~s~v~~~~i~~g~l~~~e 88 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALN--------GGYPVLYFSL-EMSEEELAARLLARLSGVPYNKIRSGDLSDEE 88 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHT--------TSSEEEEEES-SS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHh--------cCCeEEEEcC-CCCHHHHHHHHHHHhhcchhhhhhccccCHHH
Confidence 33458999999999998776666555533 1466777774 22233344433332222222111112211121
Q ss_pred H-------HHhhCCCCEE-EE----ccHHHHHHHHhCCCCCCCccEEEEecccccccc----CcHHHHHHHHHhCC----
Q 011908 215 M-------RALDYGVDAV-VG----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP---- 274 (475)
Q Consensus 215 ~-------~~~~~~~~Il-v~----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~----~~~~~~~~il~~~~---- 274 (475)
. ..+.. ..+. .. |++.+...+..-......+++||||=.|.+... +....+..+.+.+.
T Consensus 89 ~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 89 FERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 11222 2333 33 334454444332222267889999999987653 23344444433321
Q ss_pred -CCCcEEEEeee
Q 011908 275 -QNRQSMMFSAT 285 (475)
Q Consensus 275 -~~~~~l~~SAT 285 (475)
.+..++++|..
T Consensus 168 ~~~i~vi~~sQl 179 (259)
T PF03796_consen 168 ELNIPVIALSQL 179 (259)
T ss_dssp HHTSEEEEEEEB
T ss_pred HcCCeEEEcccc
Confidence 24556665554
No 412
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.77 E-value=0.31 Score=51.18 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=15.5
Q ss_pred cEEEEccCCCChhHHhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
.+|+.||.|+|||.++...
T Consensus 40 a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred eEEEECCCCCChHHHHHHH
Confidence 5799999999999876443
No 413
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.70 E-value=1.9 Score=42.10 Aligned_cols=145 Identities=18% Similarity=0.147 Sum_probs=61.2
Q ss_pred EEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH----HHHHHHHhCCC-CceEEEEcCCChhHH
Q 011908 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ----VEKEFHESAPS-LDTICVYGGTPISHQ 214 (475)
Q Consensus 140 li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q----~~~~l~~~~~~-~~~~~~~g~~~~~~~ 214 (475)
++.++.|+|||.+....++..+...+ .+..+++. ||..-+.+ ....+....+. +....-.....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR---- 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC----
Confidence 57899999999988777777665521 12345555 66555554 23344444433 12111100000
Q ss_pred HHHhhCCCCEEEEccHHH--HHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecC--hhH
Q 011908 215 MRALDYGVDAVVGTPGRV--IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP--PWI 290 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l--~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~--~~~ 290 (475)
...+.++..|.+.+.+.- ...+. -..++++++||+-.+.+..+...+......... ...++.|.|+. .+.
T Consensus 70 ~~~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 70 KIILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGWF 143 (384)
T ss_dssp EEEETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHH
T ss_pred cEEecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCce
Confidence 000134445666663221 11122 256778999998876554344433333333322 22224455443 334
Q ss_pred HHHHHHhcCCC
Q 011908 291 RSLTNKYLKNP 301 (475)
Q Consensus 291 ~~~~~~~~~~~ 301 (475)
..+......+.
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 44444444443
No 414
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.64 E-value=0.31 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=19.5
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHh
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~ 163 (475)
+|+.||||||||.+. .++++.+.+
T Consensus 128 ILVTGpTGSGKSTTl-AamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTTL-AAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHHH-HHHHHHHhc
Confidence 899999999999654 677777754
No 415
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.61 E-value=0.21 Score=47.75 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.5
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999654
No 416
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.52 E-value=0.65 Score=48.18 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=14.9
Q ss_pred cEEEEccCCCChhHHhHH
Q 011908 138 DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~ 155 (475)
..|+.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999986643
No 417
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.49 E-value=0.24 Score=50.40 Aligned_cols=18 Identities=39% Similarity=0.281 Sum_probs=14.7
Q ss_pred EEEEccCCCChhHHhHHH
Q 011908 139 MIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~ 156 (475)
.++.||.|+|||.++.+.
T Consensus 41 yLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 41 YIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 688999999999876443
No 418
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.45 E-value=0.42 Score=43.23 Aligned_cols=55 Identities=16% Similarity=0.365 Sum_probs=29.2
Q ss_pred ccHHHHHHHHhCCCCCCCccEEEEecccccc-c----cCcHHHHHHHHHhCCC-CCcEEEEeeec
Q 011908 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQML-S----VGFAEDVEVILERLPQ-NRQSMMFSATM 286 (475)
Q Consensus 228 T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~-~----~~~~~~~~~il~~~~~-~~~~l~~SAT~ 286 (475)
+...+...+...... -++|+||+|.+. . ..+...+..++..... ....++++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 334444555443221 579999999988 2 2244555666665322 23345566664
No 419
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.22 E-value=2.9 Score=40.81 Aligned_cols=109 Identities=18% Similarity=0.222 Sum_probs=57.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (475)
+.+-+.|++|+|||...-+. ++.+ .. ..+.+ ++.-+...++++.+.++. ++.+.-
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f-~~~l-p~------~~k~R----~HFh~Fm~~vh~~l~~~~---------~~~~~l---- 117 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLF-YDSL-PI------KRKRR----VHFHEFMLDVHSRLHQLR---------GQDDPL---- 117 (362)
T ss_pred ceEEEECCCCCchhHHHHHH-HHhC-Cc------ccccc----ccccHHHHHHHHHHHHHh---------CCCccH----
Confidence 56899999999999743221 2221 10 01111 244566777777777654 111100
Q ss_pred HhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC-CCCCcEEEEeeecChhH
Q 011908 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (475)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-~~~~~~l~~SAT~~~~~ 290 (475)
..+.+.+ .....++.+||.| +.+.+-...+..++..+ ....-+++.|-++|.++
T Consensus 118 -------------~~va~~l------~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 118 -------------PQVADEL------AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred -------------HHHHHHH------HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 0111111 2345579999999 44443344455555554 34555666677776543
No 420
>PRK04328 hypothetical protein; Provisional
Probab=92.19 E-value=0.35 Score=44.66 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=35.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
+..+++.|++|+|||..++..+.+.+.+ |..+++++ +.+-..++.+.+..+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~---------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4568999999999998766555555522 55677766 5556666777666653
No 421
>PRK08006 replicative DNA helicase; Provisional
Probab=92.16 E-value=2.5 Score=42.96 Aligned_cols=115 Identities=16% Similarity=0.090 Sum_probs=58.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEE-cCCChhH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISH 213 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~-g~~~~~~ 213 (475)
.|.-+++.|.+|.|||..++-.+.+.... .+..++|.. .+.-..|+..++-....++...-+. |..+..+
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~--------~g~~V~~fS-lEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e 293 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML--------QDKPVLIFS-LEMPGEQIMMRMLASLSRVDQTRIRTGQLDDED 293 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEe-ccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHH
Confidence 33447889999999997655444443322 144466554 4455666666665543333322222 2222222
Q ss_pred HH------HHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 214 QM------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 214 ~~------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
.. ..+.....+.|- |+..+....++-......+++||||=.|.+.
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 11 112122345543 4444443332211112357899999988764
No 422
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.12 E-value=0.38 Score=44.84 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=26.9
Q ss_pred CcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 122 LFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+.+.|.+.+..+... ..+++.|+||||||... .+++..+
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 356677777666543 34899999999999644 5555554
No 423
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.08 E-value=0.37 Score=46.04 Aligned_cols=55 Identities=25% Similarity=0.210 Sum_probs=37.8
Q ss_pred CCcHHHHHH-hhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 121 KLFPIQKAV-LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 121 ~l~~~Q~~~-i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
.+.+.|..- +-.+..+++++++|+||||||. ++.+++..+ ....+++.+--|.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I---------p~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI---------PPEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC---------CchhcEEEEeccccc
Confidence 345666444 4556678899999999999994 557777766 224456666666654
No 424
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.99 E-value=0.24 Score=46.33 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=33.0
Q ss_pred HHHHHHhhh-hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 124 PIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 124 ~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
....+.+.. +..+.++++.|+||||||... .+++..+.. ...+++.+-.+.++
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~--------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPP--------EDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHT--------TTSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH-HHHhhhccc--------cccceEEeccccce
Confidence 334444443 345678999999999999644 555555432 13567777766664
No 425
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.94 E-value=0.85 Score=47.33 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.1
Q ss_pred hhcCCcEEEEccCCCChhH
Q 011908 133 AMQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (475)
+..|+-+.+.|++|||||.
T Consensus 358 i~~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKST 376 (529)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3456779999999999996
No 426
>PHA00012 I assembly protein
Probab=91.93 E-value=1.9 Score=40.79 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=20.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHh
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIK 163 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~ 163 (475)
..++.|..|||||+.++.-+...+.+
T Consensus 3 iylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 3 VYVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHc
Confidence 36889999999999888777776633
No 427
>PRK09354 recA recombinase A; Provisional
Probab=91.91 E-value=0.6 Score=45.01 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=30.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
+.-..+.||+|||||..++..+.+... .+..++|+..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~---------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK---------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEECCccchHH
Confidence 345789999999999888766666542 2666777776555544
No 428
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=0.13 Score=47.97 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=30.9
Q ss_pred CccCCCCCHHHHHHHHHCCCC----------CCcHHHHHHhhh-----h-hcCCcEEEEccCCCChhHHh
Q 011908 100 DISKLDISQDIVAALARRGIS----------KLFPIQKAVLEP-----A-MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~----------~l~~~Q~~~i~~-----i-~~~~~~li~~~tGsGKT~~~ 153 (475)
..+.++-|.++.+.|.+.=+- ..+.+-++.-.. + +...|+++.||||||||+.+
T Consensus 45 ~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 45 ELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred hhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHH
Confidence 344667777777777654221 122222222211 1 11246999999999999855
No 429
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.81 E-value=1.5 Score=48.92 Aligned_cols=43 Identities=21% Similarity=0.445 Sum_probs=34.1
Q ss_pred ccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 246 VQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 246 l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
--++|+|++|.+.+......+..+++..+.+.++++.|-+.++
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 3579999999886555566788888888888988888877554
No 430
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.77 E-value=0.43 Score=46.17 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=40.0
Q ss_pred HHHHHHCCCCCCcHHHHHHhhhhh-cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 111 VAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 111 ~~~l~~~~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
.+.|.+.|. +++.+.+.+..+. .+.++++.|+||||||... .+++..+ ....+.+++-.+.+|
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i---------~~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV---------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC---------CCCCcEEEECCccee
Confidence 455556665 4567777777655 4568999999999999633 4444333 123346666666665
No 431
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.76 E-value=0.32 Score=45.28 Aligned_cols=26 Identities=31% Similarity=0.208 Sum_probs=20.5
Q ss_pred HhhhhhcCCcEEEEccCCCChhHHhH
Q 011908 129 VLEPAMQGRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 129 ~i~~i~~~~~~li~~~tGsGKT~~~~ 154 (475)
++..+..++++++.|++|+|||.++.
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 34445567899999999999998763
No 432
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.67 E-value=0.29 Score=43.42 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=16.5
Q ss_pred EEEEccCCCChhHHhHHHHHHHH
Q 011908 139 MIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+++.||||||||... ..++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 689999999999754 4455554
No 433
>PRK08760 replicative DNA helicase; Provisional
Probab=91.65 E-value=1.3 Score=44.99 Aligned_cols=111 Identities=17% Similarity=0.099 Sum_probs=57.3
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEE-cCCChhHH-
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQ- 214 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~-g~~~~~~~- 214 (475)
.-++|.|.+|.|||..++-.+.+...+ .+..++|.. .+.-..|+..++.....++....+. |..+..+.
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~--------~g~~V~~fS-lEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~ 300 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIK--------SKKGVAVFS-MEMSASQLAMRLISSNGRINAQRLRTGALEDEDWA 300 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHh--------cCCceEEEe-ccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHH
Confidence 347889999999997665444443322 134465554 4455567777766654433322222 22221111
Q ss_pred -----HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 215 -----MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 215 -----~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
...+.. ..+.|- |++.+.....+-.. -..+++||||=.+.+.
T Consensus 301 ~~~~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 301 RVTGAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 112222 344443 34455443332111 1357899999888664
No 434
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.64 E-value=1.9 Score=47.21 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=22.4
Q ss_pred CcHHHHHHhhhhhc------CCcEEEEccCCCChhHHh
Q 011908 122 LFPIQKAVLEPAMQ------GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 122 l~~~Q~~~i~~i~~------~~~~li~~~tGsGKT~~~ 153 (475)
+--.|...+..+.. ..+.++.||+|+|||.++
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 33446666665542 247999999999999755
No 435
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.58 E-value=0.13 Score=44.56 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=28.8
Q ss_pred HHhhCCCCEEEEccHHHHHHHHhCCCC--CCCccEEEEeccccccc
Q 011908 216 RALDYGVDAVVGTPGRVIDLIKRNALN--LSEVQFVVLDEADQMLS 259 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~--~~~l~~vIiDE~H~~~~ 259 (475)
+.....++|+|+++..|++-..+..+. ..+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 333445899999999887654332221 23457899999999765
No 436
>PF12846 AAA_10: AAA-like domain
Probab=91.57 E-value=0.31 Score=46.22 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=29.1
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
.+.++.|+||||||..+...+.+.+ . .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~-~--------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLI-R--------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH-H--------cCCCEEEEcCCchHHH
Confidence 5789999999999977764443443 2 2667788877655444
No 437
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=91.56 E-value=1.3 Score=42.85 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
....+++||||+|++... -...+.+.+..-+++..+++.|
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEe
Confidence 456789999999997543 2334444555544555455433
No 438
>CHL00176 ftsH cell division protein; Validated
Probab=91.56 E-value=0.98 Score=47.59 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999755
No 439
>PF05729 NACHT: NACHT domain
Probab=91.55 E-value=1.8 Score=36.60 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=16.2
Q ss_pred cEEEEccCCCChhHHhHHHHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
-++|.|+.|+|||..+ ..+...+
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHH
Confidence 3689999999999754 3444343
No 440
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.54 E-value=0.49 Score=41.18 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=27.4
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCC-CcEEEEee
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQSMMFSA 284 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~-~~~l~~SA 284 (475)
.+-+++++||...-++......+...+..+... .++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456889999999888776666666666655333 55555543
No 441
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=0.5 Score=45.07 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=34.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCc-HHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 98 GLDISKLDISQDIVAALARRGISKLF-PIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~-~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+|.+++=-+.+++.+.+.-..+++ |-.-.--..+...+.+++-||+|+|||.++
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 44677777667788888765332221 111111112224467999999999999865
No 442
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.49 E-value=0.34 Score=47.36 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=19.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~ 162 (475)
+..++++||||||||... .+++..+.
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 346899999999999643 66666654
No 443
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.45 E-value=1.2 Score=48.34 Aligned_cols=17 Identities=24% Similarity=0.016 Sum_probs=14.5
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 348 ~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLG 364 (775)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999755
No 444
>PRK10436 hypothetical protein; Provisional
Probab=91.43 E-value=0.41 Score=48.27 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=27.6
Q ss_pred CcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 122 LFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+.+.|.+.+..+... .-+++.||||||||.+. .+++..+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 456677777766543 34899999999999755 5556555
No 445
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.42 E-value=1.3 Score=44.69 Aligned_cols=19 Identities=32% Similarity=0.188 Sum_probs=15.4
Q ss_pred cEEEEccCCCChhHHhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~ 156 (475)
..|+.||.|+|||.++...
T Consensus 41 a~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999876443
No 446
>PRK13764 ATPase; Provisional
Probab=91.38 E-value=0.29 Score=50.78 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=19.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
..++++++|+||||||... .+++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 3567999999999999643 5566555
No 447
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.25 E-value=0.5 Score=43.48 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=17.1
Q ss_pred hhhcCCcEEEEccCCCChhH
Q 011908 132 PAMQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~ 151 (475)
.+..|+..++.|+.|+|||.
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred ccCCCCEEEEECCCCCCHHH
Confidence 34578889999999999996
No 448
>PRK14701 reverse gyrase; Provisional
Probab=91.24 E-value=1.2 Score=51.93 Aligned_cols=60 Identities=22% Similarity=0.404 Sum_probs=52.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~ 402 (475)
++.+++|.+|+++-+.++.+.+.. +..+..+||+++..++.++++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 466899999999999988888754 356788999999999999999999999999999973
No 449
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.19 E-value=1.3 Score=48.82 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.+.++.||+|+|||.++
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47899999999999765
No 450
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.16 E-value=2.3 Score=40.74 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=31.7
Q ss_pred ccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEee
Q 011908 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 228 T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SA 284 (475)
....+.+.+..... ....+++|||++|.|... -...+.+.+..-+ +..++++|.
T Consensus 108 ~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 108 QIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 33344455544443 357899999999998543 3444555555554 554444443
No 451
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.99 E-value=0.79 Score=41.50 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
+.-..+.|++|+|||..++..+....... .. .+.+..++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~--~~-~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG--EL-GGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccc--cc-CCCcceEEEEecCC
Confidence 45589999999999987765555443220 00 01125577776543
No 452
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.90 E-value=1.1 Score=49.27 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.+.++.||+|+|||.++
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999766
No 453
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=90.85 E-value=3.6 Score=42.34 Aligned_cols=124 Identities=20% Similarity=0.202 Sum_probs=74.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHH----HHHhCCCCceEEEEcCCChh
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE----FHESAPSLDTICVYGGTPIS 212 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~----l~~~~~~~~~~~~~g~~~~~ 212 (475)
+-.+..-|--.|||. ++.|++..+++. -.|-++-++++-+..++-++++ +++|++.-.+....++
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~---- 271 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDN---- 271 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCc----
Confidence 456777899999995 667777777652 3477899999998877766555 5567764333222111
Q ss_pred HHHHHhhCCCCEEEEccHHH-----HHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC-CCCCcEEEEeee
Q 011908 213 HQMRALDYGVDAVVGTPGRV-----IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSAT 285 (475)
Q Consensus 213 ~~~~~~~~~~~Ilv~T~~~l-----~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-~~~~~~l~~SAT 285 (475)
.|.+.-|+.= ......+..--.+++++++||+|-+. ...+..++..+ .+++.+|+.|.|
T Consensus 272 ----------tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 272 ----------VISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ----------EEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 2222222111 11122233334568899999999652 33344444443 256778888877
No 454
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.84 E-value=8.2 Score=36.72 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=70.0
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeC--CHHhHHHHHHHHHHhCCCCceEEEE---cCCChhH
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICVY---GGTPISH 213 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~P--t~~La~Q~~~~l~~~~~~~~~~~~~---g~~~~~~ 213 (475)
+++.|..|+|||.+..-.+.... ..|..+++.+- -|+-|.++.+.+-+ .+++.++. |+.+..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~---------~~g~~VllaA~DTFRAaAiEQL~~w~e---r~gv~vI~~~~G~DpAa- 208 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLK---------QQGKSVLLAAGDTFRAAAIEQLEVWGE---RLGVPVISGKEGADPAA- 208 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHH---------HCCCeEEEEecchHHHHHHHHHHHHHH---HhCCeEEccCCCCCcHH-
Confidence 68899999999987644333332 33666776663 34555443333333 23333333 222211
Q ss_pred HHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccccc-CcHHHHHHHHHhCCCCC------cEEEEeeec
Q 011908 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNR------QSMMFSATM 286 (475)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~-~~~~~~~~il~~~~~~~------~~l~~SAT~ 286 (475)
-..+.+.... -.++++|++|=+=|+-.. ..-..++++.+-+.+.. -++.+=||.
T Consensus 209 -----------------VafDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 209 -----------------VAFDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred -----------------HHHHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 1123333322 356788999999887543 24556666666654432 244557998
Q ss_pred ChhHHHHHHHh
Q 011908 287 PPWIRSLTNKY 297 (475)
Q Consensus 287 ~~~~~~~~~~~ 297 (475)
..+...-+..|
T Consensus 270 Gqnal~QAk~F 280 (340)
T COG0552 270 GQNALSQAKIF 280 (340)
T ss_pred ChhHHHHHHHH
Confidence 77665555544
No 455
>PRK12608 transcription termination factor Rho; Provisional
Probab=90.79 E-value=1.1 Score=43.65 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=26.0
Q ss_pred HHHHHHhhhhh---cCCcEEEEccCCCChhHHhHHHHHHHH
Q 011908 124 PIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 124 ~~Q~~~i~~i~---~~~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+.-.++|+.+. .|+..+|.|+.|+|||... ..+++.+
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl-~~la~~i 157 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL-QQIAAAV 157 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence 44455776654 6789999999999999644 3344444
No 456
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.78 E-value=1.9 Score=42.14 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=16.5
Q ss_pred cEEEEccCCCChhHHhHHHHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
..++.||.|+|||..+ ..+...+
T Consensus 38 ~~Ll~G~~G~GKt~~a-~~la~~l 60 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA-RIFAKAL 60 (355)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 4789999999999655 3333333
No 457
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.77 E-value=0.86 Score=42.05 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.4
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.||+|.|||..+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 6999999999999755
No 458
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.65 E-value=0.73 Score=42.82 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=25.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~ 180 (475)
+.-.++.|++|+|||..++..+.+.+. .|..++++.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~---------~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS---------RGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh---------CCCcEEEEE
Confidence 345899999999999877655555442 255677777
No 459
>PRK05636 replicative DNA helicase; Provisional
Probab=90.59 E-value=2.6 Score=43.21 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=53.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (475)
.-+++.|.+|.|||..++-.+.....+ .+..++|. ..+.-..|+..++-....++....+..|.-...+..
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~--------~g~~v~~f-SlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~ 336 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIK--------HNKASVIF-SLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWE 336 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEE-EeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHH
Confidence 346889999999997655444333322 13445554 444445555555444332332222222221112211
Q ss_pred -------HhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 217 -------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 217 -------~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
.+. ...+.|- |...+....++-.. -..+++||||=.|.+.
T Consensus 337 ~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 337 KLVQRLGKIA-QAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 122 2345443 23334333322111 1347899999999775
No 460
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.48 E-value=0.39 Score=49.00 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=38.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
.++++.|+||||||..+++|.+- .+ +.-+++.=|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~--------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NY--------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hc--------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 47999999999999999888653 21 2247888888899888777777664
No 461
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.46 E-value=1.3 Score=46.54 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=24.6
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
+...+++||||+|.+... -...+.+.+...+... ++++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCe-EEEEEeC
Confidence 567899999999998543 2334444455544444 3444444
No 462
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.44 E-value=1.2 Score=46.00 Aligned_cols=69 Identities=25% Similarity=0.424 Sum_probs=54.6
Q ss_pred EEEEeCChHHHHHHHHHHHc------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccccC-CCCCCCCE
Q 011908 347 CIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAARG-LDVPNVDL 414 (475)
Q Consensus 347 ~lVf~~~~~~~~~l~~~l~~------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~l~~G-iDip~~~~ 414 (475)
+||++||++-|.++++.+.. ++.+..+.|+++...+...+ +.| .+|+|+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999988887743 36688999999877666444 446 89999997 45566 88999999
Q ss_pred EEecC
Q 011908 415 VELVV 419 (475)
Q Consensus 415 vI~~~ 419 (475)
+|.-.
T Consensus 178 lVlDE 182 (513)
T COG0513 178 LVLDE 182 (513)
T ss_pred EEecc
Confidence 98643
No 463
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.38 E-value=1.5 Score=45.87 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=24.4
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEE
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~ 281 (475)
+.+-.++|+||+..-.|......+.+.+..+.+++.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 344467999999887776666666666655444443333
No 464
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=90.33 E-value=0.29 Score=47.14 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.||.|||||+.+
T Consensus 150 gllL~GPPGcGKTllA 165 (413)
T PLN00020 150 ILGIWGGKGQGKSFQC 165 (413)
T ss_pred EEEeeCCCCCCHHHHH
Confidence 3788999999999855
No 465
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.29 E-value=0.21 Score=49.53 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=35.4
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
++++.|+||||||..+++|.+... +..+++.=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999998877755421 344777778888887776666554
No 466
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.28 E-value=0.55 Score=48.90 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=28.0
Q ss_pred CcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 122 LFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+.+.|.+.+..+... ..++++||||||||.+. .+++..+
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 356777777776543 34789999999999754 5566655
No 467
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.19 E-value=1.7 Score=47.95 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=78.5
Q ss_pred cchhh-HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEe-
Q 011908 328 YEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT- 400 (475)
Q Consensus 328 ~~k~~-~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT- 400 (475)
..|.+ ++....+....|.|+.|.+||-=-|++=.+.+++ .+++..+.--.+..+..++++..++|+++|+|.|
T Consensus 626 FGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH 705 (1139)
T COG1197 626 FGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH 705 (1139)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech
Confidence 34444 3555556667889999999997766665555544 3567788888899999999999999999999999
Q ss_pred cccccCCCCCCCCEEEecCCCCChhHH
Q 011908 401 DVAARGLDVPNVDLVELVVLERKEVQF 427 (475)
Q Consensus 401 ~~l~~GiDip~~~~vI~~~~~~~~~~~ 427 (475)
..++.+|-+.|.-.||+-.-.+++..+
T Consensus 706 rLL~kdv~FkdLGLlIIDEEqRFGVk~ 732 (1139)
T COG1197 706 RLLSKDVKFKDLGLLIIDEEQRFGVKH 732 (1139)
T ss_pred HhhCCCcEEecCCeEEEechhhcCccH
Confidence 788899999999999986666665544
No 468
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=90.19 E-value=0.29 Score=39.53 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=24.9
Q ss_pred hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
+..+.-+++.|+.|+|||. +.-.++..+ |....+-.||-.|++
T Consensus 12 l~~g~vi~L~GdLGaGKTt-f~r~l~~~l-----------g~~~~V~SPTF~l~~ 54 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTT-FVRGLARAL-----------GIDEEVTSPTFSLVN 54 (123)
T ss_dssp HSS-EEEEEEESTTSSHHH-HHHHHHHHT-----------T--S----TTTTSEE
T ss_pred CCCCCEEEEECCCCCCHHH-HHHHHHHHc-----------CCCCCcCCCCeEEEE
Confidence 3344458999999999994 545666554 333367788877653
No 469
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.09 E-value=1.6 Score=45.86 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.||+|+|||.++
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999755
No 470
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.96 E-value=1.1 Score=49.09 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.1
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.+.++.||+|+|||.++
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 47999999999999766
No 471
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.92 E-value=0.5 Score=45.15 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.8
Q ss_pred hhcCCcEEEEccCCCChhHH
Q 011908 133 AMQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~ 152 (475)
+..+.++++.|+||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44667899999999999963
No 472
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=0.78 Score=50.06 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=35.9
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCc-HHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 96 DEGLDISKLDISQDIVAALARRGISKLF-PIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~-~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
+...+|++++.-..++..|+++-.+.+. |-+..-+ .|..-+.+++.||.|+|||+.+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 4456688888778888888876433222 2221111 1223356999999999999865
No 473
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.87 E-value=1.6 Score=44.08 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=51.7
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (475)
+.-+++.|++|+|||..++..+.... + .+.+++++.. ++-..|+..+...+.-......+...
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a-~--------~g~kvlYvs~-EEs~~qi~~ra~rlg~~~~~l~~~~e------- 156 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLA-K--------NQMKVLYVSG-EESLQQIKMRAIRLGLPEPNLYVLSE------- 156 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-h--------cCCcEEEEEC-cCCHHHHHHHHHHcCCChHHeEEcCC-------
Confidence 34589999999999976654443332 1 2446888765 45567777666654322111111110
Q ss_pred HHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
.+.+.+...+.. .+.+++|||....+.
T Consensus 157 -----------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 -----------TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred -----------CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 123444444433 245789999998764
No 474
>PRK09165 replicative DNA helicase; Provisional
Probab=89.85 E-value=3.5 Score=42.32 Aligned_cols=119 Identities=10% Similarity=0.067 Sum_probs=59.8
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhcc------CCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEE-cCC
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKH------GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGT 209 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~------~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~-g~~ 209 (475)
.-+++.|.+|.|||..++-.+.+....+.... ....|..++|+ ..+.-..|+..++.....++...-+. |..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f-SlEMs~~ql~~R~la~~s~v~~~~i~~~~l 296 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFF-SLEMSAEQLATRILSEQSEISSSKIRRGKI 296 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEE-eCcCCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 34789999999999766554444432211000 00124456555 55666677777765554344322222 222
Q ss_pred ChhHH------HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 210 PISHQ------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 210 ~~~~~------~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
...+. ...+. ..++.|- |++.+....++-.. -..+++||||=.|.+.
T Consensus 297 ~~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 297 SEEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred CHHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 21111 11111 2344443 34445444332111 1357899999999664
No 475
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=89.79 E-value=0.27 Score=40.28 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=27.6
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 188 (475)
..+.-+++.|+.|+|||. +.-.+...+ +...-+-.||-.|++.
T Consensus 20 ~~~~~i~l~G~lGaGKTt-l~~~l~~~l-----------g~~~~v~SPTf~lv~~ 62 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTT-LVQGLLQGL-----------GIQGNVTSPTFTLVNE 62 (133)
T ss_pred CCCCEEEEEcCCCCCHHH-HHHHHHHHc-----------CCCCcccCCCeeeeee
Confidence 345568899999999995 434454443 2223466787666554
No 476
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.77 E-value=17 Score=38.07 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=73.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHc--------cCCeeeecCCCCHHHHHHHHHHHh----cCCCcEEEEe--cccccCCCC
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAK--------SYNCEPLHGDISQSQRERTLSAFR----DGRFNILIAT--DVAARGLDV 409 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~--------~~~~~~lh~~~~~~~r~~~~~~F~----~g~~~vLvaT--~~l~~GiDi 409 (475)
.+.+++|.||.+-...+.+.... +.+-.+.-.+-+ -+.+++.+. .|.-.+|+|. ..+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 47899999999988888887753 122223333333 344555553 4555677766 688999999
Q ss_pred CC--CCEEEecCCCCC-----------------------hhHHH-----------hhccCCCCCCCcEEEeeChhhhhhc
Q 011908 410 PN--VDLVELVVLERK-----------------------EVQFL-----------STQISRPGKSRVLSEMLDADLLSSQ 453 (475)
Q Consensus 410 p~--~~~vI~~~~~~~-----------------------~~~~~-----------~gR~gR~g~~~~~~~~~~~~~~~~~ 453 (475)
.+ .++||..+.|.. +..|. +|||-|.-+.=.++++++.+-..
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~~-- 783 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYAR-- 783 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhcC--
Confidence 75 778887777643 11221 78888877766777777654331
Q ss_pred CCCchhhhhhhhhhhcc
Q 011908 454 GSPLKEVETCTMTWVAG 470 (475)
Q Consensus 454 ~~~~~~~~~~~~~~~~~ 470 (475)
.. .+..+.|+..
T Consensus 784 --p~---~RKLp~WI~~ 795 (821)
T KOG1133|consen 784 --PL---SRKLPKWIRK 795 (821)
T ss_pred --ch---hhhccHHHHh
Confidence 11 1255778753
No 477
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.69 E-value=0.39 Score=48.89 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=27.8
Q ss_pred CcHHHHHHhhhhhcCCc--EEEEccCCCChhHHhHHHHHHHH
Q 011908 122 LFPIQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~--~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+.+.|.+.+..+..... +++.||||||||.+. .+++..+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 46778888877665433 789999999999654 4455554
No 478
>COG1485 Predicted ATPase [General function prediction only]
Probab=89.62 E-value=6.5 Score=37.65 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=59.7
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (475)
+.+-+.|++|.|||... .++...+. .+.-.-++.-..+.++++++..+-+ ..+
T Consensus 66 ~GlYl~GgVGrGKT~LM--D~Fy~~lp----------~~~k~R~HFh~FM~~vH~~l~~l~g---------~~d------ 118 (367)
T COG1485 66 RGLYLWGGVGRGKTMLM--DLFYESLP----------GERKRRLHFHRFMARVHQRLHTLQG---------QTD------ 118 (367)
T ss_pred ceEEEECCCCccHHHHH--HHHHhhCC----------ccccccccHHHHHHHHHHHHHHHcC---------CCC------
Confidence 44788999999999632 22222111 0011224666777777888777641 111
Q ss_pred HhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC-CCCCcEEEEeeecChhH
Q 011908 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (475)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-~~~~~~l~~SAT~~~~~ 290 (475)
.+ ..+...+ ..+..++.+||.| +.+-+-...+..+++.+ ...+.++..|-|.|.++
T Consensus 119 -------pl----~~iA~~~------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 119 -------PL----PPIADEL------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred -------cc----HHHHHHH------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 10 0011111 3456779999999 44433233334444443 45677788888887654
No 479
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=89.53 E-value=1.6 Score=46.10 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=36.1
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH--hHHHHHHHHHHhC
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE--LAKQVEKEFHESA 197 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~--La~Q~~~~l~~~~ 197 (475)
.+.++.|+||+|||..+...+.+.+.. |..++++=|--. |...++...+..+
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i~~---------g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDIRR---------GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 579999999999998765555555422 555677667643 7777777766654
No 480
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.51 E-value=1.5 Score=47.99 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=13.7
Q ss_pred EEEEccCCCChhHHh
Q 011908 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+++.||||+|||..+
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999866
No 481
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.49 E-value=1.2 Score=43.90 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.5
Q ss_pred cEEEEccCCCChhHHhH
Q 011908 138 DMIGRARTGTGKTLAFG 154 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~ 154 (475)
.+++.||.|+|||..+.
T Consensus 41 ~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 41 ALLFCGPRGVGKTTCAR 57 (367)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997553
No 482
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=89.45 E-value=0.66 Score=47.07 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCC-CCCcEEEEeee
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSAT 285 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~-~~~~~l~~SAT 285 (475)
..++++.||||+|++....| ..+|+.+. +..+++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~af----NALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAF----NALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHH----HHHhcccccCccCeEEEEec
Confidence 45789999999998754333 55555553 23456666676
No 483
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=0.76 Score=47.72 Aligned_cols=111 Identities=22% Similarity=0.301 Sum_probs=65.0
Q ss_pred CCCcHHHHHHhhhhh--------cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHH
Q 011908 120 SKLFPIQKAVLEPAM--------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~--------~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 191 (475)
.-+-+.-.++++.|. +|+-+.+.||+|-|||-++ ..+++
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~---------------------------------kSIA~ 460 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA---------------------------------KSIAR 460 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH---------------------------------HHHHH
Confidence 356677777777654 2345788999999999644 22223
Q ss_pred HHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEE-ccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHH
Q 011908 192 EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVG-TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (475)
Q Consensus 192 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~-T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il 270 (475)
.+.+.|..+ -.||.... ..+.....-.|| -|+++.+.++.-... --++.+||+|.+.....|+--..+|
T Consensus 461 ALnRkFfRf----SvGG~tDv---AeIkGHRRTYVGAMPGkiIq~LK~v~t~---NPliLiDEvDKlG~g~qGDPasALL 530 (906)
T KOG2004|consen 461 ALNRKFFRF----SVGGMTDV---AEIKGHRRTYVGAMPGKIIQCLKKVKTE---NPLILIDEVDKLGSGHQGDPASALL 530 (906)
T ss_pred HhCCceEEE----eccccccH---HhhcccceeeeccCChHHHHHHHhhCCC---CceEEeehhhhhCCCCCCChHHHHH
Confidence 333322111 13555422 223333333444 599999999874431 2369999999987543455555555
Q ss_pred HhC
Q 011908 271 ERL 273 (475)
Q Consensus 271 ~~~ 273 (475)
..+
T Consensus 531 ElL 533 (906)
T KOG2004|consen 531 ELL 533 (906)
T ss_pred Hhc
Confidence 555
No 484
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.32 E-value=1.3 Score=50.26 Aligned_cols=79 Identities=18% Similarity=0.383 Sum_probs=58.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCC---eeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccc-ccCCC-CC-C
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYN---CEPLHGDISQSQRERTLSAFRDGRFNILIATDVA-ARGLD-VP-N 411 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~---~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l-~~GiD-ip-~ 411 (475)
++.+++|.+|+++-+.++++.+.. ++. +..+||+++..++...++.+.+|..+|||+|+.. ...++ +. .
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~ 199 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPK 199 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCC
Confidence 467899999999999998887753 222 3458999999999999999999999999999632 11111 12 6
Q ss_pred CCEEEecCCC
Q 011908 412 VDLVELVVLE 421 (475)
Q Consensus 412 ~~~vI~~~~~ 421 (475)
++++|.-+++
T Consensus 200 ~~~iVvDEaD 209 (1171)
T TIGR01054 200 FDFIFVDDVD 209 (1171)
T ss_pred CCEEEEeChH
Confidence 7777765443
No 485
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.30 E-value=0.75 Score=47.04 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=42.9
Q ss_pred HHhhhhhcC-----CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 128 AVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 128 ~~i~~i~~~-----~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
..++.++.| .-+++.|++|+|||..++..+.+.+. +|.++++++ ..+-..|+.++...+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~---------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA---------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345555544 45899999999999877666555542 266678766 6777888888887764
No 486
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.20 E-value=0.6 Score=45.38 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=18.6
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+..++++||||||||... .+++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 456899999999999644 4555544
No 487
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.05 E-value=1.2 Score=40.35 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=35.6
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
+.-+++.|++|+|||..++..+...+. .+..++++.- .+-..|+.+.+..+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~---------~g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK---------NGEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---------CCCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 345899999999999766555555442 2556777655 445777777777654
No 488
>PRK09087 hypothetical protein; Validated
Probab=88.95 E-value=1.6 Score=39.59 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=22.0
Q ss_pred cEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 247 ~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
+++++|++|.+.. ....+-.+++.+......+++|++-
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCC
Confidence 3699999997632 2344555555554433445555553
No 489
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.91 E-value=1 Score=41.80 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=35.3
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
.+..+++.|++|||||.-++-.+.+.+. .|..+++++ +.+...++.+.+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~---------~ge~vlyvs-~~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAR---------EGEPVLYVS-TEESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHh---------cCCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 4567999999999999766555554442 255566665 4555666666666543
No 490
>PRK06321 replicative DNA helicase; Provisional
Probab=88.81 E-value=7.9 Score=39.37 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=55.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEE-EcCCChhHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQM 215 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~-~g~~~~~~~~ 215 (475)
.=+++.|.+|.|||..++- +...+.. ..+..+++.. .+.-..|+..++.....++...-+ .+.....+..
T Consensus 227 ~LiiiaarPgmGKTafal~-ia~~~a~-------~~g~~v~~fS-LEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~ 297 (472)
T PRK06321 227 NLMILAARPAMGKTALALN-IAENFCF-------QNRLPVGIFS-LEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQ 297 (472)
T ss_pred cEEEEEeCCCCChHHHHHH-HHHHHHH-------hcCCeEEEEe-ccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHH
Confidence 3478899999999975544 3333211 1134455554 444556666665543333332222 2332222211
Q ss_pred ------HHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 216 ------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 216 ------~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
..+.+ ..+.|- |.+.+.....+-.. -..+++||||=.+.+.
T Consensus 298 ~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 298 RIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 22222 345554 34444443332111 1347899999998764
No 491
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=88.76 E-value=0.63 Score=48.54 Aligned_cols=49 Identities=22% Similarity=0.102 Sum_probs=38.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.++++.||||||||..+++|.+-.. +.-++|+=|--++........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4799999999999999988877542 334777778888888777766665
No 492
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=88.73 E-value=2 Score=44.98 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=38.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH--HhHHHHHHHHHHhCC
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR--ELAKQVEKEFHESAP 198 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~--~La~Q~~~~l~~~~~ 198 (475)
.+.++.|+||+|||..+...+.+.+.. +..++++=|-. ++...++...+....
T Consensus 181 gHtlV~GtTGsGKT~l~~~li~q~i~~---------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 181 GHTLVLGTTRVGKTRLAELLITQDIRR---------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 579999999999998877666666532 56677877865 566666666665543
No 493
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=88.68 E-value=0.68 Score=41.37 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCC
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt 182 (475)
+.-..+.|++|||||..++..+.+... .+..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~---------~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR---------QGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---------CCCeEEEEECC
Confidence 345899999999999877555544431 25567776654
No 494
>PRK05595 replicative DNA helicase; Provisional
Probab=88.58 E-value=1.6 Score=44.07 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=55.8
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEE-cCCChhHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQ 214 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~-g~~~~~~~ 214 (475)
|.-+++.|.||.|||..++-.+.+...+ .|..++++. .+.-..|+..++.....++...-+. |..+..+.
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~--------~g~~vl~fS-lEms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~ 271 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR--------EGKSVAIFS-LEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDW 271 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH--------cCCcEEEEe-cCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH
Confidence 3347889999999997654444332222 245566664 3555666666655543333322222 22221111
Q ss_pred ------HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 215 ------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 215 ------~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
...+.. ..+.|- |++.+.....+-.. -..+++||||=.|.+.
T Consensus 272 ~~~~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~ 324 (444)
T PRK05595 272 ENIARASGPLAA-AKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMS 324 (444)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhcc
Confidence 111111 234332 33444333332111 1347899999999775
No 495
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=88.51 E-value=0.89 Score=42.15 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=30.5
Q ss_pred HhhhhhcC-----CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 129 VLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 129 ~i~~i~~~-----~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
.++.++.| .-.=+.|+.|||||-.++..++...+.. ...+.+..++|+.-..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~---~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPE---EIGGLGGKVVYIDTEG 82 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGG---CTTSSSSEEEEEESSS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhccc---ccccCCCceEEEeCCC
Confidence 55555544 2356799999999976655544443221 1113356688886433
No 496
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.42 E-value=3.3 Score=43.33 Aligned_cols=140 Identities=21% Similarity=0.248 Sum_probs=70.8
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE-EeCCHHhHHHHHHHHHHhCC--------CCceEE
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV-LAPTRELAKQVEKEFHESAP--------SLDTIC 204 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li-l~Pt~~La~Q~~~~l~~~~~--------~~~~~~ 204 (475)
..|+.+.+.||.|+|||.++ .++..+++ ..+.++++ =+|-+.+-.++.+.--..-. .+.-..
T Consensus 492 ~pGe~vALVGPSGsGKSTia--sLL~rfY~-------PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI 562 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIA--SLLLRFYD-------PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENI 562 (716)
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHHHhcC-------CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHH
Confidence 45677999999999999865 44555544 23333332 34666666665553222111 011111
Q ss_pred EEcCCChhH--------------HHHHhhCCCCEEEEccHHHHH------HHHhCCCCCCCccEEEEeccccccccCcHH
Q 011908 205 VYGGTPISH--------------QMRALDYGVDAVVGTPGRVID------LIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (475)
Q Consensus 205 ~~g~~~~~~--------------~~~~~~~~~~Ilv~T~~~l~~------~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~ 264 (475)
.+|-.+... ....+.++++=.||.-+..++ .-.-.. -+.+-.++|+|||-.-+|..-..
T Consensus 563 ~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARA-Llr~P~VLILDEATSALDaeSE~ 641 (716)
T KOG0058|consen 563 AYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARA-LLRNPRVLILDEATSALDAESEY 641 (716)
T ss_pred hcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHH-HhcCCCEEEEechhhhcchhhHH
Confidence 122211111 112223344444444322110 000000 14456789999999888876667
Q ss_pred HHHHHHHhCCCCCcEEEEee
Q 011908 265 DVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 265 ~~~~il~~~~~~~~~l~~SA 284 (475)
.+++.+.++..+. .++.=|
T Consensus 642 lVq~aL~~~~~~r-TVlvIA 660 (716)
T KOG0058|consen 642 LVQEALDRLMQGR-TVLVIA 660 (716)
T ss_pred HHHHHHHHhhcCC-eEEEEe
Confidence 7777777776663 443333
No 497
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=88.39 E-value=3.4 Score=44.09 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhc-------C--------CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH
Q 011908 124 PIQKAVLEPAMQ-------G--------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 124 ~~Q~~~i~~i~~-------~--------~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 188 (475)
-.|..|+..+.. | ..+++.||||.|||..+ -++...+. .+...+|-....+-.+.
T Consensus 494 iGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELA-kaLA~~Lf---------g~e~aliR~DMSEy~Ek 563 (786)
T COG0542 494 IGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELA-KALAEALF---------GDEQALIRIDMSEYMEK 563 (786)
T ss_pred eChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHH-HHHHHHhc---------CCCccceeechHHHHHH
Confidence 347777776542 1 24799999999999876 33333442 23456777776665554
Q ss_pred H
Q 011908 189 V 189 (475)
Q Consensus 189 ~ 189 (475)
|
T Consensus 564 H 564 (786)
T COG0542 564 H 564 (786)
T ss_pred H
Confidence 3
No 498
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.36 E-value=0.86 Score=45.11 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=31.0
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHH
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 191 (475)
...+++++.|.||||||. ++..++..+.+. +.+++|.=|.-+.....++
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~--------g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRAR--------GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT--------T-EEEEEEETTHHHHHH--
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHHc--------CCEEEEEECCchHHHHhcC
Confidence 345789999999999996 556777776552 4456777777666555444
No 499
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.21 E-value=3 Score=42.01 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=26.8
Q ss_pred ccEEEEeccccccccC-------cHHHHHHHHHhC---CCCCcEEEEeeecCh
Q 011908 246 VQFVVLDEADQMLSVG-------FAEDVEVILERL---PQNRQSMMFSATMPP 288 (475)
Q Consensus 246 l~~vIiDE~H~~~~~~-------~~~~~~~il~~~---~~~~~~l~~SAT~~~ 288 (475)
-.+|.|||.|.+.... ....+..+|..+ .++--+|++.||--|
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 4568899999876432 122233343333 456679999999544
No 500
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.12 E-value=0.82 Score=46.75 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=36.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
+...++.|++|||||..++..+.+.+.+ .|..+++++- .+-..++.+....+.-
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~--------~ge~~lyvs~-eE~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIH--------FDEPGVFVTF-EESPQDIIKNARSFGW 74 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEEEE-ecCHHHHHHHHHHcCC
Confidence 4568999999999998776655555422 1445777774 4666777777766543
Done!