Query 011908
Match_columns 475
No_of_seqs 311 out of 2893
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 17:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.9E-56 2.7E-60 443.7 42.8 350 95-449 52-408 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 5.4E-54 1.8E-58 429.6 37.6 361 95-457 11-392 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 5.7E-53 1.9E-57 421.3 38.2 362 97-471 35-402 (410)
4 1s2m_A Putative ATP-dependent 100.0 1.3E-51 4.5E-56 410.0 39.6 347 96-452 18-369 (400)
5 1xti_A Probable ATP-dependent 100.0 7.9E-51 2.7E-55 403.1 40.6 344 99-450 8-359 (391)
6 3eiq_A Eukaryotic initiation f 100.0 1E-51 3.4E-56 412.7 34.1 362 94-468 35-403 (414)
7 1hv8_A Putative ATP-dependent 100.0 1.5E-50 5.1E-55 397.5 37.6 350 97-466 4-359 (367)
8 3sqw_A ATP-dependent RNA helic 100.0 2.9E-50 1E-54 418.1 34.5 344 106-451 28-401 (579)
9 3fht_A ATP-dependent RNA helic 100.0 1.1E-49 3.6E-54 397.8 36.5 342 96-449 22-380 (412)
10 3i5x_A ATP-dependent RNA helic 100.0 4.3E-50 1.5E-54 416.5 34.1 345 106-452 79-453 (563)
11 3pey_A ATP-dependent RNA helic 100.0 4.2E-49 1.4E-53 391.1 38.3 340 98-450 4-358 (395)
12 1fuu_A Yeast initiation factor 100.0 3.6E-51 1.2E-55 405.9 22.1 347 97-453 19-371 (394)
13 2z0m_A 337AA long hypothetical 100.0 3.7E-48 1.3E-52 375.9 34.8 321 106-451 1-325 (337)
14 1gm5_A RECG; helicase, replica 100.0 3.2E-51 1.1E-55 430.5 14.1 381 32-447 285-696 (780)
15 3fmp_B ATP-dependent RNA helic 100.0 7.9E-50 2.7E-54 406.2 18.8 341 98-450 91-448 (479)
16 2v1x_A ATP-dependent DNA helic 100.0 2.2E-47 7.7E-52 393.3 32.0 334 101-453 23-379 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 2.2E-46 7.5E-51 382.2 32.5 331 100-453 3-348 (523)
18 3fho_A ATP-dependent RNA helic 100.0 2.4E-47 8.2E-52 389.4 21.3 337 100-449 120-471 (508)
19 3oiy_A Reverse gyrase helicase 100.0 7.2E-45 2.5E-49 363.0 28.1 311 108-446 8-363 (414)
20 2zj8_A DNA helicase, putative 100.0 3.6E-44 1.2E-48 381.4 29.3 331 100-450 2-389 (720)
21 2p6r_A Afuhel308 helicase; pro 100.0 1.5E-44 5E-49 383.3 25.4 336 100-451 2-391 (702)
22 2va8_A SSO2462, SKI2-type heli 100.0 1.6E-43 5.5E-48 376.5 33.2 336 98-449 7-409 (715)
23 3l9o_A ATP-dependent RNA helic 100.0 1E-43 3.5E-48 388.1 26.9 327 100-448 163-597 (1108)
24 4a2p_A RIG-I, retinoic acid in 100.0 3E-43 1E-47 364.8 26.3 328 118-451 4-511 (556)
25 2eyq_A TRCF, transcription-rep 100.0 6.2E-42 2.1E-46 376.3 33.7 321 103-449 585-923 (1151)
26 2ykg_A Probable ATP-dependent 100.0 5.9E-43 2E-47 371.9 22.9 334 112-451 4-519 (696)
27 3tbk_A RIG-I helicase domain; 100.0 3.4E-42 1.2E-46 356.8 25.7 326 120-452 3-511 (555)
28 2xgj_A ATP-dependent RNA helic 100.0 3.9E-41 1.3E-45 364.7 34.0 307 120-448 85-499 (1010)
29 4a2q_A RIG-I, retinoic acid in 100.0 1.1E-41 3.7E-46 365.8 27.5 330 116-451 243-752 (797)
30 4gl2_A Interferon-induced heli 100.0 1.6E-42 5.3E-47 368.9 19.7 326 120-449 6-519 (699)
31 1wp9_A ATP-dependent RNA helic 100.0 3.1E-40 1.1E-44 336.2 33.7 318 121-451 9-478 (494)
32 4ddu_A Reverse gyrase; topoiso 100.0 5.1E-41 1.8E-45 366.8 27.0 284 110-422 67-388 (1104)
33 4a2w_A RIG-I, retinoic acid in 100.0 2E-40 6.9E-45 359.5 27.1 330 116-451 243-752 (936)
34 4a4z_A Antiviral helicase SKI2 100.0 4.9E-40 1.7E-44 356.2 28.7 307 119-446 37-490 (997)
35 1tf5_A Preprotein translocase 100.0 1.2E-39 4.1E-44 336.1 25.6 319 116-450 79-547 (844)
36 1gku_B Reverse gyrase, TOP-RG; 100.0 2.2E-40 7.4E-45 362.1 19.1 279 112-421 48-352 (1054)
37 4f92_B U5 small nuclear ribonu 100.0 4.9E-39 1.7E-43 362.8 28.8 336 106-455 911-1315(1724)
38 2oca_A DAR protein, ATP-depend 100.0 3.2E-38 1.1E-42 323.4 27.6 309 119-446 111-453 (510)
39 4f92_B U5 small nuclear ribonu 100.0 7.4E-39 2.5E-43 361.3 23.3 330 118-454 76-479 (1724)
40 2fsf_A Preprotein translocase 100.0 1.8E-38 6.2E-43 326.4 23.3 319 117-451 71-586 (853)
41 2fwr_A DNA repair protein RAD2 100.0 1.9E-38 6.6E-43 321.8 18.3 295 120-450 92-456 (472)
42 1nkt_A Preprotein translocase 100.0 8.9E-37 3.1E-41 314.1 27.0 317 117-450 108-619 (922)
43 2jlq_A Serine protease subunit 100.0 1.9E-37 6.5E-42 311.2 20.5 285 118-448 1-311 (451)
44 1yks_A Genome polyprotein [con 100.0 4.3E-38 1.5E-42 314.4 12.7 266 132-451 4-305 (440)
45 2whx_A Serine protease/ntpase/ 100.0 1.3E-37 4.4E-42 321.6 15.5 297 104-446 155-476 (618)
46 3o8b_A HCV NS3 protease/helica 100.0 8E-37 2.7E-41 312.8 18.9 277 120-452 216-518 (666)
47 2wv9_A Flavivirin protease NS2 100.0 8.4E-37 2.9E-41 317.4 19.1 281 121-446 215-531 (673)
48 2xau_A PRE-mRNA-splicing facto 100.0 1.9E-36 6.4E-41 320.6 21.7 331 98-450 71-445 (773)
49 2v6i_A RNA helicase; membrane, 100.0 1.6E-35 5.4E-40 295.3 25.5 267 135-446 1-288 (431)
50 3h1t_A Type I site-specific re 100.0 1.5E-35 5E-40 308.6 22.7 313 121-447 178-557 (590)
51 3fe2_A Probable ATP-dependent 100.0 8.7E-35 3E-39 268.1 23.5 213 94-307 24-238 (242)
52 3iuy_A Probable ATP-dependent 100.0 8.7E-35 3E-39 265.8 22.0 212 94-305 14-227 (228)
53 2z83_A Helicase/nucleoside tri 100.0 1.2E-34 4.3E-39 291.2 19.6 270 130-448 15-313 (459)
54 1vec_A ATP-dependent RNA helic 100.0 1.9E-33 6.6E-38 252.7 24.9 200 99-304 3-205 (206)
55 2gxq_A Heat resistant RNA depe 100.0 1E-33 3.5E-38 254.7 22.7 204 100-306 2-205 (207)
56 3dmq_A RNA polymerase-associat 100.0 3.5E-34 1.2E-38 311.0 23.5 317 120-446 152-611 (968)
57 1q0u_A Bstdead; DEAD protein, 100.0 6.7E-34 2.3E-38 258.2 19.1 202 99-306 4-211 (219)
58 3ber_A Probable ATP-dependent 100.0 4.8E-33 1.6E-37 257.1 23.7 204 97-306 41-247 (249)
59 2oxc_A Probable ATP-dependent 100.0 3.5E-33 1.2E-37 255.4 21.8 206 94-306 19-228 (230)
60 2pl3_A Probable ATP-dependent 100.0 1E-32 3.5E-37 253.4 24.6 209 95-306 21-232 (236)
61 3bor_A Human initiation factor 100.0 2.8E-33 9.7E-38 257.1 20.8 205 96-306 27-234 (237)
62 3ly5_A ATP-dependent RNA helic 100.0 5.3E-33 1.8E-37 258.9 22.3 204 98-303 51-259 (262)
63 1qde_A EIF4A, translation init 100.0 1.1E-32 3.6E-37 251.3 22.6 204 96-306 11-216 (224)
64 1z63_A Helicase of the SNF2/RA 100.0 3.1E-32 1.1E-36 278.2 27.4 308 120-448 36-453 (500)
65 1wrb_A DJVLGB; RNA helicase, D 100.0 6.8E-33 2.3E-37 257.4 19.4 210 97-306 21-239 (253)
66 3rc3_A ATP-dependent RNA helic 100.0 3.5E-32 1.2E-36 281.8 25.9 270 134-448 153-445 (677)
67 3fmo_B ATP-dependent RNA helic 100.0 1.5E-32 5.2E-37 260.4 21.3 201 97-306 90-297 (300)
68 1t6n_A Probable ATP-dependent 100.0 3.8E-32 1.3E-36 246.9 22.8 202 98-305 13-219 (220)
69 3dkp_A Probable ATP-dependent 100.0 2.9E-31 9.9E-36 245.2 18.4 209 95-308 21-242 (245)
70 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 7.9E-30 2.7E-34 274.9 25.1 312 120-447 270-708 (1038)
71 3jux_A Protein translocase sub 100.0 6.6E-29 2.3E-33 250.5 30.0 312 118-450 73-589 (822)
72 1z3i_X Similar to RAD54-like; 100.0 1.5E-28 5E-33 256.9 31.0 320 121-448 55-528 (644)
73 3mwy_W Chromo domain-containin 100.0 4.4E-29 1.5E-33 267.2 27.4 318 120-450 235-686 (800)
74 2ipc_A Preprotein translocase 99.9 1.8E-25 6.2E-30 229.6 28.4 128 117-258 76-215 (997)
75 1c4o_A DNA nucleotide excision 99.9 4E-25 1.4E-29 230.7 28.2 165 276-450 380-552 (664)
76 2d7d_A Uvrabc system protein B 99.9 1.5E-24 5E-29 226.3 25.8 166 275-450 385-558 (661)
77 3b6e_A Interferon-induced heli 99.9 5.2E-24 1.8E-28 192.4 12.4 166 117-285 29-216 (216)
78 2hjv_A ATP-dependent RNA helic 99.9 9.5E-23 3.3E-27 175.3 17.7 136 316-452 8-146 (163)
79 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.1E-23 2.1E-27 180.1 14.0 141 315-455 17-160 (185)
80 1t5i_A C_terminal domain of A 99.9 1.2E-22 4.1E-27 176.1 15.1 132 317-449 5-139 (172)
81 1fuk_A Eukaryotic initiation f 99.9 2.1E-22 7.1E-27 173.7 16.2 134 318-452 4-141 (165)
82 3eaq_A Heat resistant RNA depe 99.9 3.3E-22 1.1E-26 179.5 17.1 131 320-451 8-141 (212)
83 2rb4_A ATP-dependent RNA helic 99.9 2.6E-22 9E-27 174.8 15.6 136 316-452 6-151 (175)
84 2p6n_A ATP-dependent RNA helic 99.9 1.2E-22 4.2E-27 178.9 13.6 150 295-448 9-161 (191)
85 3i32_A Heat resistant RNA depe 99.9 9.7E-22 3.3E-26 184.7 16.4 133 318-451 3-138 (300)
86 3llm_A ATP-dependent RNA helic 99.9 2.2E-21 7.5E-26 177.4 17.3 180 107-301 47-231 (235)
87 1rif_A DAR protein, DNA helica 99.9 9.2E-22 3.2E-26 185.2 12.4 153 120-290 112-266 (282)
88 2vl7_A XPD; helicase, unknown 99.9 2.8E-20 9.5E-25 190.3 24.0 126 118-258 5-188 (540)
89 2yjt_D ATP-dependent RNA helic 99.7 3.4E-22 1.2E-26 173.2 0.0 134 321-455 7-144 (170)
90 2fz4_A DNA repair protein RAD2 99.8 2.5E-19 8.5E-24 163.5 16.2 138 120-288 92-230 (237)
91 3crv_A XPD/RAD3 related DNA he 99.8 2.1E-17 7.2E-22 169.6 29.0 127 121-259 3-187 (551)
92 4a15_A XPD helicase, ATP-depen 99.7 6.7E-16 2.3E-20 159.7 23.0 80 120-207 2-87 (620)
93 1z5z_A Helicase of the SNF2/RA 99.6 2.2E-15 7.5E-20 139.7 12.5 124 326-449 93-225 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 1.3E-08 4.4E-13 105.2 10.2 143 123-285 151-298 (608)
95 3upu_A ATP-dependent DNA helic 98.5 9.1E-06 3.1E-10 81.1 19.7 70 116-193 20-94 (459)
96 4b3f_X DNA-binding protein smu 98.5 3.1E-07 1.1E-11 95.9 9.3 68 121-197 189-257 (646)
97 3e1s_A Exodeoxyribonuclease V, 98.4 1.7E-06 5.8E-11 88.5 12.8 121 120-282 188-312 (574)
98 2gk6_A Regulator of nonsense t 98.3 6.2E-06 2.1E-10 85.6 15.1 69 120-196 179-247 (624)
99 2xzl_A ATP-dependent helicase 98.3 8.5E-06 2.9E-10 86.5 15.1 69 120-196 359-427 (802)
100 2wjy_A Regulator of nonsense t 98.2 1.4E-05 4.8E-10 84.8 14.5 69 120-196 355-423 (800)
101 3lfu_A DNA helicase II; SF1 he 98.2 6.8E-05 2.3E-09 78.3 18.7 71 120-197 8-78 (647)
102 2o0j_A Terminase, DNA packagin 97.6 4.1E-05 1.4E-09 73.7 3.9 71 120-197 162-232 (385)
103 3cpe_A Terminase, DNA packagin 97.3 0.00071 2.4E-08 69.6 9.5 72 120-198 162-233 (592)
104 3vkw_A Replicase large subunit 97.1 0.0024 8.2E-08 62.2 10.3 103 139-282 164-266 (446)
105 3hgt_A HDA1 complex subunit 3; 97.1 0.0026 8.7E-08 59.1 10.0 120 326-450 106-239 (328)
106 3ec2_A DNA replication protein 97.1 0.0042 1.4E-07 53.0 10.7 19 135-153 37-55 (180)
107 2orw_A Thymidine kinase; TMTK, 97.0 0.0007 2.4E-08 58.3 4.9 39 136-183 3-41 (184)
108 1xx6_A Thymidine kinase; NESG, 96.8 0.0022 7.6E-08 55.3 6.6 38 137-183 9-46 (191)
109 2kjq_A DNAA-related protein; s 96.8 0.0016 5.6E-08 53.8 5.6 19 135-153 35-53 (149)
110 2chg_A Replication factor C sm 96.6 0.029 9.8E-07 49.0 13.1 40 244-284 101-140 (226)
111 1l8q_A Chromosomal replication 96.6 0.0097 3.3E-07 56.1 10.3 25 136-161 37-61 (324)
112 1uaa_A REP helicase, protein ( 96.6 0.0041 1.4E-07 65.1 8.4 71 121-198 2-72 (673)
113 2b8t_A Thymidine kinase; deoxy 96.6 0.0012 4.1E-08 58.4 3.7 90 137-258 13-102 (223)
114 3te6_A Regulatory protein SIR3 96.5 0.0097 3.3E-07 55.6 9.5 25 137-162 46-70 (318)
115 2j9r_A Thymidine kinase; TK1, 96.4 0.0031 1.1E-07 55.0 4.7 38 138-184 30-67 (214)
116 1pjr_A PCRA; DNA repair, DNA r 96.4 0.0079 2.7E-07 63.4 8.7 71 120-197 10-80 (724)
117 3h4m_A Proteasome-activating n 96.4 0.016 5.3E-07 53.4 9.8 55 97-153 12-68 (285)
118 3u4q_A ATP-dependent helicase/ 96.3 0.0075 2.6E-07 67.4 8.5 106 121-236 10-116 (1232)
119 2z4s_A Chromosomal replication 96.3 0.021 7.3E-07 56.2 10.8 24 137-161 131-154 (440)
120 1w4r_A Thymidine kinase; type 96.2 0.0045 1.5E-07 53.1 4.9 37 137-182 21-57 (195)
121 1gm5_A RECG; helicase, replica 96.2 0.02 6.8E-07 60.4 10.7 103 325-427 397-506 (780)
122 1a5t_A Delta prime, HOLB; zinc 96.2 0.0083 2.9E-07 56.8 7.2 39 122-161 3-48 (334)
123 2zpa_A Uncharacterized protein 96.2 0.011 3.8E-07 60.5 8.2 114 121-288 175-290 (671)
124 3n70_A Transport activator; si 96.1 0.024 8.3E-07 46.3 8.6 20 134-153 22-41 (145)
125 4b4t_J 26S protease regulatory 96.0 0.019 6.4E-07 55.3 8.3 56 95-153 141-199 (405)
126 3kl4_A SRP54, signal recogniti 96.0 0.084 2.9E-06 51.4 13.1 55 244-298 178-235 (433)
127 2v1u_A Cell division control p 95.9 0.052 1.8E-06 52.1 11.4 18 136-153 44-61 (387)
128 1d2n_A N-ethylmaleimide-sensit 95.9 0.052 1.8E-06 49.5 10.8 17 137-153 65-81 (272)
129 2orv_A Thymidine kinase; TP4A 95.9 0.012 4E-07 51.9 5.8 40 136-184 19-58 (234)
130 4b4t_H 26S protease regulatory 95.7 0.027 9.1E-07 55.0 8.4 57 95-153 202-260 (467)
131 3bos_A Putative DNA replicatio 95.7 0.022 7.5E-07 50.7 7.2 18 136-153 52-69 (242)
132 2w58_A DNAI, primosome compone 95.6 0.059 2E-06 46.6 9.5 24 137-161 55-78 (202)
133 3e2i_A Thymidine kinase; Zn-bi 95.6 0.012 4.2E-07 51.2 4.8 39 137-184 29-67 (219)
134 3eie_A Vacuolar protein sortin 95.4 0.02 6.7E-07 53.9 6.2 51 97-153 13-68 (322)
135 3u61_B DNA polymerase accessor 95.2 0.022 7.5E-07 53.5 5.7 38 244-281 104-141 (324)
136 2p65_A Hypothetical protein PF 95.2 0.057 1.9E-06 45.6 7.9 18 136-153 43-60 (187)
137 1iqp_A RFCS; clamp loader, ext 95.2 0.088 3E-06 49.2 9.9 39 244-283 109-147 (327)
138 3cf0_A Transitional endoplasmi 95.2 0.031 1.1E-06 52.0 6.5 56 97-153 10-66 (301)
139 1jbk_A CLPB protein; beta barr 95.0 0.54 1.9E-05 39.5 13.6 17 137-153 44-60 (195)
140 1fnn_A CDC6P, cell division co 94.8 0.048 1.6E-06 52.5 7.2 16 138-153 46-61 (389)
141 3pvs_A Replication-associated 94.8 0.076 2.6E-06 52.3 8.6 17 137-153 51-67 (447)
142 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.23 7.8E-06 44.7 11.2 18 136-153 39-56 (262)
143 1g5t_A COB(I)alamin adenosyltr 94.7 0.087 3E-06 45.1 7.6 140 137-294 29-171 (196)
144 2qby_B CDC6 homolog 3, cell di 94.7 0.068 2.3E-06 51.3 7.9 24 137-161 46-69 (384)
145 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.064 2.2E-06 50.4 7.3 51 97-153 7-62 (322)
146 3pfi_A Holliday junction ATP-d 94.6 0.096 3.3E-06 49.4 8.6 17 137-153 56-72 (338)
147 3vfd_A Spastin; ATPase, microt 94.6 0.086 3E-06 50.9 8.3 18 136-153 148-165 (389)
148 3syl_A Protein CBBX; photosynt 94.5 0.057 1.9E-06 50.2 6.6 17 137-153 68-84 (309)
149 3oiy_A Reverse gyrase helicase 94.5 0.13 4.5E-06 49.9 9.4 95 326-420 45-148 (414)
150 1njg_A DNA polymerase III subu 94.4 0.3 1E-05 42.9 10.9 16 138-153 47-62 (250)
151 1hqc_A RUVB; extended AAA-ATPa 94.3 0.14 4.7E-06 47.9 8.9 17 137-153 39-55 (324)
152 2qby_A CDC6 homolog 1, cell di 94.3 0.14 4.7E-06 49.0 9.1 18 136-153 45-62 (386)
153 2zan_A Vacuolar protein sortin 94.3 0.057 2E-06 53.2 6.4 17 137-153 168-184 (444)
154 1sxj_D Activator 1 41 kDa subu 94.2 0.33 1.1E-05 45.8 11.4 39 244-283 132-170 (353)
155 2qp9_X Vacuolar protein sortin 94.2 0.15 5.3E-06 48.4 9.0 17 137-153 85-101 (355)
156 1sxj_C Activator 1 40 kDa subu 94.1 0.19 6.7E-06 47.3 9.3 39 244-283 109-147 (340)
157 3uk6_A RUVB-like 2; hexameric 94.0 0.37 1.3E-05 45.8 11.2 24 137-161 71-94 (368)
158 3dm5_A SRP54, signal recogniti 93.9 0.78 2.7E-05 44.7 13.2 131 138-298 102-236 (443)
159 3hjh_A Transcription-repair-co 93.8 0.26 9E-06 48.8 10.0 54 135-200 13-66 (483)
160 2q6t_A DNAB replication FORK h 93.8 0.21 7.3E-06 49.1 9.3 114 135-259 199-324 (444)
161 1sxj_B Activator 1 37 kDa subu 93.8 0.2 6.9E-06 46.5 8.8 38 245-283 107-144 (323)
162 3t15_A Ribulose bisphosphate c 93.5 0.099 3.4E-06 48.3 6.0 17 137-153 37-53 (293)
163 1sxj_A Activator 1 95 kDa subu 93.4 0.25 8.5E-06 49.6 9.2 41 244-286 147-189 (516)
164 2w0m_A SSO2452; RECA, SSPF, un 93.4 0.44 1.5E-05 41.7 9.9 24 133-156 20-43 (235)
165 3hu3_A Transitional endoplasmi 93.4 0.35 1.2E-05 48.1 10.0 42 247-288 299-350 (489)
166 2gno_A DNA polymerase III, gam 93.2 0.62 2.1E-05 43.1 11.0 40 243-283 80-119 (305)
167 2r6a_A DNAB helicase, replicat 93.1 0.34 1.1E-05 47.8 9.4 50 135-193 202-251 (454)
168 2eyq_A TRCF, transcription-rep 92.9 0.33 1.1E-05 53.7 9.9 104 324-427 631-741 (1151)
169 2chq_A Replication factor C sm 92.7 0.16 5.3E-06 47.3 6.2 16 138-153 40-55 (319)
170 1jr3_A DNA polymerase III subu 92.7 0.47 1.6E-05 45.1 9.6 16 138-153 40-55 (373)
171 4b4t_M 26S protease regulatory 92.6 0.11 3.8E-06 50.6 5.0 56 95-153 174-232 (434)
172 1sxj_E Activator 1 40 kDa subu 92.4 0.36 1.2E-05 45.6 8.4 42 244-286 133-174 (354)
173 2ce7_A Cell division protein F 92.3 0.25 8.5E-06 48.8 7.1 52 97-153 11-66 (476)
174 4ddu_A Reverse gyrase; topoiso 91.9 0.39 1.3E-05 52.8 8.9 96 325-420 101-205 (1104)
175 2p6n_A ATP-dependent RNA helic 91.9 1.6 5.6E-05 37.1 11.2 73 173-253 54-130 (191)
176 1w5s_A Origin recognition comp 91.9 0.26 8.9E-06 47.6 6.8 17 137-153 51-69 (412)
177 1n0w_A DNA repair protein RAD5 91.8 1 3.4E-05 39.7 10.2 25 134-158 22-46 (243)
178 4a1f_A DNAB helicase, replicat 91.5 0.24 8.2E-06 46.6 5.7 53 133-195 43-95 (338)
179 3co5_A Putative two-component 91.3 0.15 5E-06 41.4 3.6 20 134-153 25-44 (143)
180 4b4t_L 26S protease subunit RP 91.2 0.15 5.2E-06 49.7 4.1 55 96-153 175-232 (437)
181 3io5_A Recombination and repai 91.1 0.82 2.8E-05 42.3 8.6 90 138-258 30-124 (333)
182 4b4t_K 26S protease regulatory 91.0 0.19 6.6E-06 48.8 4.7 56 95-153 165-223 (428)
183 2l8b_A Protein TRAI, DNA helic 90.6 0.45 1.5E-05 40.0 5.9 121 122-285 35-158 (189)
184 2hjv_A ATP-dependent RNA helic 90.3 1.8 6.3E-05 35.5 9.6 74 173-254 35-112 (163)
185 2fna_A Conserved hypothetical 90.2 7.8 0.00027 36.0 15.3 52 229-285 124-178 (357)
186 2ehv_A Hypothetical protein PH 90.0 0.41 1.4E-05 42.6 5.7 24 132-155 26-49 (251)
187 3cmu_A Protein RECA, recombina 89.6 0.85 2.9E-05 52.7 8.9 43 136-187 1427-1469(2050)
188 4b4t_I 26S protease regulatory 89.6 0.28 9.4E-06 47.5 4.3 56 95-153 175-233 (437)
189 1fuk_A Eukaryotic initiation f 89.4 3.1 0.00011 34.2 10.4 73 173-253 30-106 (165)
190 2dr3_A UPF0273 protein PH0284; 89.4 0.49 1.7E-05 41.9 5.8 53 134-196 21-73 (247)
191 2z43_A DNA repair and recombin 89.3 1.7 5.7E-05 40.6 9.6 58 136-196 107-165 (324)
192 3m6a_A ATP-dependent protease 89.2 0.6 2E-05 47.2 6.8 19 135-153 107-125 (543)
193 3fe2_A Probable ATP-dependent 88.8 5.4 0.00018 35.0 12.3 75 343-421 101-186 (242)
194 3pxi_A Negative regulator of g 88.5 0.29 1E-05 51.7 4.1 16 138-153 523-538 (758)
195 1t6n_A Probable ATP-dependent 88.5 6.7 0.00023 33.7 12.5 75 344-421 82-168 (220)
196 2zts_A Putative uncharacterize 88.3 0.41 1.4E-05 42.5 4.5 53 136-197 30-82 (251)
197 2qgz_A Helicase loader, putati 88.2 0.79 2.7E-05 42.5 6.4 25 136-161 152-176 (308)
198 3hws_A ATP-dependent CLP prote 87.7 0.65 2.2E-05 44.1 5.7 18 136-153 51-68 (363)
199 1u94_A RECA protein, recombina 87.5 2.3 7.8E-05 40.2 9.2 40 135-183 62-101 (356)
200 2rb4_A ATP-dependent RNA helic 87.4 2.5 8.7E-05 35.1 8.6 73 173-253 34-110 (175)
201 2zr9_A Protein RECA, recombina 87.4 2.2 7.5E-05 40.2 9.0 40 134-182 59-98 (349)
202 3eaq_A Heat resistant RNA depe 87.0 3.1 0.00011 35.9 9.2 71 173-251 31-105 (212)
203 2jgn_A DBX, DDX3, ATP-dependen 86.8 1.8 6.3E-05 36.5 7.4 73 172-252 45-121 (185)
204 3b85_A Phosphate starvation-in 86.5 0.8 2.7E-05 39.7 5.0 33 121-153 7-39 (208)
205 3ber_A Probable ATP-dependent 86.4 4.8 0.00016 35.7 10.4 75 343-421 110-196 (249)
206 1t5i_A C_terminal domain of A 86.2 3.2 0.00011 34.4 8.6 74 173-254 31-108 (172)
207 3bor_A Human initiation factor 85.6 2.9 0.0001 36.7 8.5 75 343-420 97-182 (237)
208 1ls1_A Signal recognition part 85.4 5.2 0.00018 36.6 10.3 21 135-155 97-117 (295)
209 1qvr_A CLPB protein; coiled co 85.3 1.5 5.2E-05 46.9 7.5 17 137-153 192-208 (854)
210 2pl3_A Probable ATP-dependent 85.2 5.9 0.0002 34.5 10.3 74 343-421 96-181 (236)
211 1e9r_A Conjugal transfer prote 85.2 0.92 3.2E-05 44.3 5.4 44 135-187 52-95 (437)
212 2i1q_A DNA repair and recombin 84.8 2.4 8.1E-05 39.4 7.8 24 136-159 98-121 (322)
213 1ofh_A ATP-dependent HSL prote 84.7 1.5 5.2E-05 40.2 6.4 18 136-153 50-67 (310)
214 2v1x_A ATP-dependent DNA helic 84.4 3.3 0.00011 42.1 9.2 59 343-401 83-144 (591)
215 2gxq_A Heat resistant RNA depe 84.3 11 0.00036 31.9 11.4 93 325-421 46-154 (207)
216 3i5x_A ATP-dependent RNA helic 84.3 6.4 0.00022 39.6 11.4 78 172-255 338-420 (563)
217 1p9r_A General secretion pathw 83.8 1.3 4.4E-05 43.0 5.6 37 124-161 153-191 (418)
218 2oxc_A Probable ATP-dependent 83.7 3.1 0.00011 36.3 7.7 72 343-419 91-174 (230)
219 2x8a_A Nuclear valosin-contain 83.6 0.27 9.3E-06 44.8 0.6 54 97-153 5-61 (274)
220 2i4i_A ATP-dependent RNA helic 83.5 5 0.00017 38.4 9.8 72 172-251 275-350 (417)
221 1vec_A ATP-dependent RNA helic 83.3 5.2 0.00018 34.0 8.9 72 344-419 71-154 (206)
222 1oyw_A RECQ helicase, ATP-depe 83.2 3.7 0.00013 41.1 8.9 75 343-417 64-145 (523)
223 3iuy_A Probable ATP-dependent 83.1 3 0.0001 36.2 7.4 75 343-421 93-177 (228)
224 3nbx_X ATPase RAVA; AAA+ ATPas 83.1 1.4 4.7E-05 43.9 5.5 30 124-153 29-58 (500)
225 3hr8_A Protein RECA; alpha and 83.1 3.1 0.00011 39.3 7.7 42 136-186 61-102 (356)
226 1gku_B Reverse gyrase, TOP-RG; 83.1 3 0.0001 45.7 8.7 77 342-420 97-184 (1054)
227 2d7d_A Uvrabc system protein B 82.8 12 0.00042 38.5 12.8 77 173-257 445-525 (661)
228 2bjv_A PSP operon transcriptio 82.4 0.94 3.2E-05 40.7 3.8 19 135-153 28-46 (265)
229 1wrb_A DJVLGB; RNA helicase, D 82.4 5 0.00017 35.5 8.7 73 344-420 100-183 (253)
230 3bh0_A DNAB-like replicative h 82.1 2.3 7.8E-05 39.4 6.4 54 133-196 65-118 (315)
231 3ly5_A ATP-dependent RNA helic 82.0 6 0.0002 35.3 9.1 74 343-420 125-210 (262)
232 1um8_A ATP-dependent CLP prote 82.0 2.1 7E-05 40.8 6.2 18 136-153 72-89 (376)
233 1xti_A Probable ATP-dependent 81.8 5.5 0.00019 37.7 9.3 74 344-420 76-161 (391)
234 4ag6_A VIRB4 ATPase, type IV s 81.5 1.6 5.5E-05 41.8 5.3 41 135-184 34-74 (392)
235 3sqw_A ATP-dependent RNA helic 81.3 10 0.00035 38.3 11.5 77 173-255 288-369 (579)
236 3u4q_B ATP-dependent helicase/ 80.9 3.6 0.00012 45.7 8.5 53 139-198 4-56 (1166)
237 3vaa_A Shikimate kinase, SK; s 80.2 0.81 2.8E-05 39.2 2.4 19 135-153 24-42 (199)
238 2r44_A Uncharacterized protein 80.1 0.7 2.4E-05 43.2 2.1 23 131-153 41-63 (331)
239 2oap_1 GSPE-2, type II secreti 80.1 1.9 6.5E-05 43.0 5.4 40 111-152 236-276 (511)
240 3e70_C DPA, signal recognition 79.8 36 0.0012 31.5 13.7 54 245-298 211-265 (328)
241 2r8r_A Sensor protein; KDPD, P 79.7 2.1 7.4E-05 37.4 4.9 24 138-161 8-31 (228)
242 3jvv_A Twitching mobility prot 79.6 1.7 5.7E-05 41.1 4.6 26 135-161 122-147 (356)
243 1qhx_A CPT, protein (chloramph 79.2 0.9 3.1E-05 37.9 2.3 17 137-153 4-20 (178)
244 3trf_A Shikimate kinase, SK; a 79.1 0.91 3.1E-05 38.2 2.3 18 136-153 5-22 (185)
245 1tue_A Replication protein E1; 79.0 2.4 8E-05 36.5 4.8 51 108-161 28-82 (212)
246 3lw7_A Adenylate kinase relate 78.9 0.87 3E-05 37.6 2.2 16 138-153 3-18 (179)
247 3i32_A Heat resistant RNA depe 78.9 5.1 0.00017 36.8 7.5 74 173-254 28-105 (300)
248 1qde_A EIF4A, translation init 78.9 8.3 0.00028 33.2 8.7 92 324-420 58-164 (224)
249 1ojl_A Transcriptional regulat 78.8 1.3 4.5E-05 40.9 3.5 19 135-153 24-42 (304)
250 3b9p_A CG5977-PA, isoform A; A 78.6 0.88 3E-05 41.7 2.3 53 98-153 17-71 (297)
251 3iij_A Coilin-interacting nucl 78.5 0.96 3.3E-05 37.9 2.3 19 135-153 10-28 (180)
252 1kgd_A CASK, peripheral plasma 78.1 1.3 4.4E-05 37.2 3.0 19 135-153 4-22 (180)
253 3a8t_A Adenylate isopentenyltr 78.0 1.2 3.9E-05 41.7 2.8 17 137-153 41-57 (339)
254 2qmh_A HPR kinase/phosphorylas 78.0 1.2 4E-05 38.2 2.6 18 136-153 34-51 (205)
255 2eyu_A Twitching motility prot 77.8 1.1 3.8E-05 40.3 2.6 21 133-153 22-42 (261)
256 3fht_A ATP-dependent RNA helic 77.7 6.2 0.00021 37.6 8.2 73 173-253 266-342 (412)
257 2j41_A Guanylate kinase; GMP, 77.5 1 3.6E-05 38.5 2.3 20 134-153 4-23 (207)
258 1ixz_A ATP-dependent metallopr 77.5 0.98 3.3E-05 40.3 2.2 54 97-153 11-66 (254)
259 3lda_A DNA repair protein RAD5 77.5 12 0.00042 35.7 10.0 19 137-155 179-197 (400)
260 2r2a_A Uncharacterized protein 77.5 1.5 5E-05 37.7 3.2 18 138-155 7-24 (199)
261 2gza_A Type IV secretion syste 77.4 1.4 4.9E-05 41.7 3.4 21 132-152 171-191 (361)
262 1lv7_A FTSH; alpha/beta domain 77.2 1 3.4E-05 40.3 2.2 17 137-153 46-62 (257)
263 1zp6_A Hypothetical protein AT 77.0 0.81 2.8E-05 38.7 1.4 20 134-153 7-26 (191)
264 1hv8_A Putative ATP-dependent 77.0 9.7 0.00033 35.4 9.2 74 172-253 237-314 (367)
265 1y63_A LMAJ004144AAA protein; 76.9 1.2 4E-05 37.6 2.4 19 135-153 9-27 (184)
266 1c4o_A DNA nucleotide excision 76.8 14 0.00049 38.0 11.0 77 173-257 439-519 (664)
267 1kht_A Adenylate kinase; phosp 76.7 1.2 4E-05 37.6 2.3 18 136-153 3-20 (192)
268 1kag_A SKI, shikimate kinase I 76.4 1.3 4.4E-05 36.7 2.5 18 136-153 4-21 (173)
269 2cvh_A DNA repair and recombin 76.4 2.8 9.4E-05 36.1 4.8 24 134-157 18-41 (220)
270 3exa_A TRNA delta(2)-isopenten 76.4 1.4 4.7E-05 40.8 2.8 16 138-153 5-20 (322)
271 1sky_E F1-ATPase, F1-ATP synth 76.3 15 0.00052 35.8 10.3 26 130-155 145-170 (473)
272 3pey_A ATP-dependent RNA helic 76.1 7.8 0.00027 36.6 8.4 77 172-256 242-322 (395)
273 3foz_A TRNA delta(2)-isopenten 76.1 1.4 4.8E-05 40.6 2.8 15 139-153 13-27 (316)
274 3cf2_A TER ATPase, transitiona 76.0 2.3 7.9E-05 44.8 4.8 57 96-153 471-528 (806)
275 2j37_W Signal recognition part 75.7 34 0.0012 33.8 12.9 18 138-155 103-120 (504)
276 2ze6_A Isopentenyl transferase 75.5 1.5 5.1E-05 39.2 2.8 16 138-153 3-18 (253)
277 3kb2_A SPBC2 prophage-derived 75.5 1.2 4.2E-05 36.7 2.1 16 138-153 3-18 (173)
278 3cmw_A Protein RECA, recombina 75.4 8 0.00027 44.2 9.1 53 137-201 1432-1484(1706)
279 1w36_B RECB, exodeoxyribonucle 75.2 4.4 0.00015 45.0 7.0 60 138-197 18-80 (1180)
280 2px0_A Flagellar biosynthesis 75.0 3.1 0.00011 38.1 4.9 20 136-155 105-124 (296)
281 3nwn_A Kinesin-like protein KI 74.9 1.9 6.5E-05 40.7 3.4 25 129-153 96-122 (359)
282 2ffh_A Protein (FFH); SRP54, s 74.9 55 0.0019 31.5 13.8 19 137-155 99-117 (425)
283 1ly1_A Polynucleotide kinase; 74.8 1.3 4.5E-05 36.8 2.1 16 138-153 4-19 (181)
284 3tau_A Guanylate kinase, GMP k 74.8 1.8 6.2E-05 37.3 3.1 18 136-153 8-25 (208)
285 1cr0_A DNA primase/helicase; R 74.6 3.2 0.00011 37.9 4.9 23 133-155 32-54 (296)
286 2pt7_A CAG-ALFA; ATPase, prote 74.5 1.4 4.8E-05 41.2 2.4 19 133-151 168-186 (330)
287 1bg2_A Kinesin; motor protein, 74.2 2.1 7.3E-05 39.8 3.6 25 129-153 69-95 (325)
288 1f9v_A Kinesin-like protein KA 74.0 2.3 8E-05 39.9 3.8 25 129-153 76-102 (347)
289 1xp8_A RECA protein, recombina 74.0 3 0.0001 39.5 4.6 40 135-183 73-112 (366)
290 1yks_A Genome polyprotein [con 74.0 5.3 0.00018 38.9 6.5 68 173-250 177-245 (440)
291 2qor_A Guanylate kinase; phosp 73.9 1.7 5.6E-05 37.3 2.6 20 134-153 10-29 (204)
292 3fb4_A Adenylate kinase; psych 73.9 1.4 4.9E-05 38.0 2.2 16 138-153 2-17 (216)
293 1lvg_A Guanylate kinase, GMP k 73.6 2 6.9E-05 36.7 3.1 19 135-153 3-21 (198)
294 3dc4_A Kinesin-like protein NO 73.5 2.1 7.1E-05 40.2 3.3 24 130-153 87-112 (344)
295 1u0j_A DNA replication protein 73.5 2.9 9.8E-05 37.6 4.1 44 108-154 73-122 (267)
296 3t0q_A AGR253WP; kinesin, alph 73.4 2.3 7.9E-05 40.0 3.6 25 129-153 77-103 (349)
297 3dl0_A Adenylate kinase; phosp 73.3 1.5 5.1E-05 37.9 2.2 16 138-153 2-17 (216)
298 4fcw_A Chaperone protein CLPB; 73.3 1.4 4.7E-05 40.6 2.0 16 138-153 49-64 (311)
299 3tr0_A Guanylate kinase, GMP k 73.3 2 6.9E-05 36.6 3.0 19 135-153 6-24 (205)
300 1zuh_A Shikimate kinase; alpha 72.9 1.6 5.5E-05 36.0 2.2 17 137-153 8-24 (168)
301 3dkp_A Probable ATP-dependent 72.9 3.1 0.00011 36.7 4.2 76 343-421 97-185 (245)
302 1v8k_A Kinesin-like protein KI 72.7 2.3 7.9E-05 40.8 3.4 24 130-153 147-172 (410)
303 3crm_A TRNA delta(2)-isopenten 72.6 1.9 6.5E-05 40.0 2.8 16 138-153 7-22 (323)
304 2h58_A Kinesin-like protein KI 72.5 2.5 8.5E-05 39.4 3.6 26 128-153 71-98 (330)
305 1goj_A Kinesin, kinesin heavy 72.4 2.5 8.4E-05 39.9 3.5 24 130-153 73-98 (355)
306 1fuu_A Yeast initiation factor 72.4 12 0.00042 35.2 8.7 72 343-419 88-170 (394)
307 3b6u_A Kinesin-like protein KI 72.3 2.4 8.2E-05 40.2 3.4 25 129-153 93-119 (372)
308 2r62_A Cell division protease 72.3 0.88 3E-05 41.0 0.5 17 137-153 45-61 (268)
309 2vvg_A Kinesin-2; motor protei 72.3 2.5 8.6E-05 39.7 3.6 24 130-153 82-107 (350)
310 4etp_A Kinesin-like protein KA 72.3 2.6 8.9E-05 40.5 3.7 25 129-153 132-158 (403)
311 1nlf_A Regulatory protein REPA 72.1 6.3 0.00022 35.5 6.2 27 131-157 25-51 (279)
312 3bgw_A DNAB-like replicative h 72.1 5.5 0.00019 38.8 6.1 51 135-195 196-246 (444)
313 4gp7_A Metallophosphoesterase; 72.0 1.3 4.4E-05 36.9 1.4 19 135-153 8-26 (171)
314 1t5c_A CENP-E protein, centrom 72.0 2.5 8.4E-05 39.8 3.4 25 129-153 69-95 (349)
315 3cm0_A Adenylate kinase; ATP-b 72.0 1.3 4.4E-05 37.2 1.4 18 136-153 4-21 (186)
316 4a14_A Kinesin, kinesin-like p 72.0 2.6 8.8E-05 39.6 3.6 25 129-153 75-101 (344)
317 2c9o_A RUVB-like 1; hexameric 72.0 2 6.9E-05 42.2 3.0 18 136-153 63-80 (456)
318 3lre_A Kinesin-like protein KI 71.9 2.6 8.8E-05 39.8 3.5 24 130-153 98-123 (355)
319 2y65_A Kinesin, kinesin heavy 71.8 2.6 8.9E-05 39.9 3.6 25 129-153 76-102 (365)
320 3a00_A Guanylate kinase, GMP k 71.7 2 6.7E-05 36.2 2.5 16 138-153 3-18 (186)
321 2j0s_A ATP-dependent RNA helic 71.7 11 0.00039 35.8 8.3 73 173-253 276-352 (410)
322 2nr8_A Kinesin-like protein KI 71.6 2.5 8.7E-05 39.8 3.4 25 129-153 95-121 (358)
323 1s2m_A Putative ATP-dependent 71.6 9.4 0.00032 36.2 7.7 73 173-253 258-334 (400)
324 2zfi_A Kinesin-like protein KI 71.6 2.6 9E-05 39.9 3.6 25 129-153 81-107 (366)
325 4eun_A Thermoresistant glucoki 71.6 1.9 6.5E-05 36.8 2.4 19 135-153 28-46 (200)
326 2db3_A ATP-dependent RNA helic 71.6 15 0.00051 35.5 9.2 69 175-251 302-374 (434)
327 3gbj_A KIF13B protein; kinesin 71.5 2.5 8.7E-05 39.8 3.4 25 129-153 84-110 (354)
328 1iy2_A ATP-dependent metallopr 71.5 2.1 7.2E-05 38.8 2.8 54 97-153 35-90 (278)
329 1knq_A Gluconate kinase; ALFA/ 71.5 1.6 5.4E-05 36.3 1.8 18 136-153 8-25 (175)
330 2pt5_A Shikimate kinase, SK; a 71.4 1.8 6.2E-05 35.5 2.2 17 137-153 1-17 (168)
331 3d8b_A Fidgetin-like protein 1 71.3 2.1 7.1E-05 40.5 2.8 18 136-153 117-134 (357)
332 1x88_A Kinesin-like protein KI 71.1 2.5 8.5E-05 39.9 3.2 25 129-153 80-106 (359)
333 3d3q_A TRNA delta(2)-isopenten 71.0 2.2 7.6E-05 39.9 2.8 16 138-153 9-24 (340)
334 2ewv_A Twitching motility prot 70.8 1.9 6.6E-05 41.1 2.4 20 134-153 134-153 (372)
335 1z6g_A Guanylate kinase; struc 70.8 2.7 9.4E-05 36.5 3.3 20 134-153 21-40 (218)
336 1m7g_A Adenylylsulfate kinase; 70.8 2.8 9.6E-05 36.1 3.3 31 122-153 12-42 (211)
337 1via_A Shikimate kinase; struc 70.7 2 6.9E-05 35.6 2.3 16 138-153 6-21 (175)
338 3sr0_A Adenylate kinase; phosp 70.7 2.4 8.4E-05 36.5 2.9 17 137-153 1-17 (206)
339 1g8p_A Magnesium-chelatase 38 70.5 1.5 5E-05 41.2 1.5 18 136-153 45-62 (350)
340 3ney_A 55 kDa erythrocyte memb 70.5 2.6 9E-05 36.0 3.0 19 135-153 18-36 (197)
341 1wp9_A ATP-dependent RNA helic 70.5 18 0.00063 34.9 9.7 75 173-255 361-447 (494)
342 2wbe_C Bipolar kinesin KRP-130 70.2 2.7 9.2E-05 39.9 3.3 25 129-153 92-118 (373)
343 3t61_A Gluconokinase; PSI-biol 70.2 1.9 6.5E-05 36.8 2.1 17 137-153 19-35 (202)
344 2heh_A KIF2C protein; kinesin, 70.1 2.8 9.6E-05 39.9 3.4 24 130-153 127-152 (387)
345 1vma_A Cell division protein F 69.9 4.7 0.00016 37.1 4.8 17 138-154 106-122 (306)
346 1rj9_A FTSY, signal recognitio 69.8 5.2 0.00018 36.8 5.1 18 136-153 102-119 (304)
347 2iyv_A Shikimate kinase, SK; t 69.7 2.3 8E-05 35.5 2.5 17 137-153 3-19 (184)
348 1ex7_A Guanylate kinase; subst 69.5 2.3 7.8E-05 36.0 2.4 16 137-152 2-17 (186)
349 3bfn_A Kinesin-like protein KI 69.5 2.7 9.3E-05 40.0 3.1 22 132-153 93-116 (388)
350 1tev_A UMP-CMP kinase; ploop, 69.3 1.9 6.3E-05 36.4 1.8 17 137-153 4-20 (196)
351 1e6c_A Shikimate kinase; phosp 69.3 2.3 7.8E-05 35.1 2.4 17 137-153 3-19 (173)
352 3cob_A Kinesin heavy chain-lik 69.2 2.6 8.8E-05 40.0 2.9 25 129-153 71-97 (369)
353 2ius_A DNA translocase FTSK; n 69.2 5.5 0.00019 39.5 5.4 20 135-154 166-185 (512)
354 2rhm_A Putative kinase; P-loop 69.0 2 6.9E-05 36.1 2.0 17 137-153 6-22 (193)
355 2c95_A Adenylate kinase 1; tra 69.0 2.3 8E-05 35.8 2.4 19 135-153 8-26 (196)
356 1ye8_A Protein THEP1, hypothet 68.9 2.9 9.8E-05 35.1 2.9 16 138-153 2-17 (178)
357 2bdt_A BH3686; alpha-beta prot 68.8 2.2 7.4E-05 36.0 2.1 16 138-153 4-19 (189)
358 3u06_A Protein claret segregat 68.8 2.9 0.0001 40.2 3.2 26 128-153 129-156 (412)
359 2owm_A Nckin3-434, related to 68.8 3.2 0.00011 40.3 3.6 24 130-153 129-154 (443)
360 1e4v_A Adenylate kinase; trans 68.7 2.1 7.2E-05 37.0 2.1 16 138-153 2-17 (214)
361 1zd8_A GTP:AMP phosphotransfer 68.6 2.2 7.5E-05 37.2 2.2 18 136-153 7-24 (227)
362 2yvu_A Probable adenylyl-sulfa 68.6 5.3 0.00018 33.3 4.6 18 136-153 13-30 (186)
363 1znw_A Guanylate kinase, GMP k 68.5 3.1 0.00011 35.7 3.1 22 132-153 16-37 (207)
364 2rep_A Kinesin-like protein KI 68.5 3.5 0.00012 39.2 3.6 25 129-153 107-133 (376)
365 4akg_A Glutathione S-transfera 68.4 4.7 0.00016 48.4 5.4 48 106-154 890-941 (2695)
366 2cdn_A Adenylate kinase; phosp 68.3 2.5 8.4E-05 36.0 2.4 17 137-153 21-37 (201)
367 2fsf_A Preprotein translocase 68.3 14 0.00047 38.9 8.3 70 342-417 113-200 (853)
368 1gvn_B Zeta; postsegregational 68.3 2.2 7.4E-05 39.0 2.2 16 138-153 35-50 (287)
369 2v54_A DTMP kinase, thymidylat 68.2 2.5 8.5E-05 36.0 2.4 19 135-153 3-21 (204)
370 1aky_A Adenylate kinase; ATP:A 68.0 2.5 8.5E-05 36.6 2.4 18 136-153 4-21 (220)
371 3pxg_A Negative regulator of g 67.5 3.1 0.00011 41.0 3.3 17 137-153 202-218 (468)
372 3eph_A TRNA isopentenyltransfe 67.3 2.8 9.4E-05 40.2 2.7 15 139-153 5-19 (409)
373 1g41_A Heat shock protein HSLU 67.2 9.6 0.00033 37.0 6.5 17 137-153 51-67 (444)
374 2jaq_A Deoxyguanosine kinase; 67.1 2.5 8.4E-05 35.9 2.2 16 138-153 2-17 (205)
375 2bwj_A Adenylate kinase 5; pho 67.1 2.3 8E-05 35.9 2.0 19 135-153 11-29 (199)
376 1nks_A Adenylate kinase; therm 67.0 2.3 8E-05 35.7 2.0 16 138-153 3-18 (194)
377 1in4_A RUVB, holliday junction 66.7 3.2 0.00011 38.7 3.1 17 137-153 52-68 (334)
378 2qt1_A Nicotinamide riboside k 66.5 2.2 7.5E-05 36.6 1.7 22 132-153 17-38 (207)
379 3b5x_A Lipid A export ATP-bind 66.3 11 0.00037 38.2 7.1 40 243-283 496-535 (582)
380 3f9v_A Minichromosome maintena 66.1 3.2 0.00011 42.2 3.1 16 138-153 329-344 (595)
381 1qf9_A UMP/CMP kinase, protein 66.1 2.5 8.6E-05 35.4 2.0 16 138-153 8-23 (194)
382 2yjt_D ATP-dependent RNA helic 69.4 1.2 4.3E-05 36.9 0.0 72 173-252 30-105 (170)
383 2vli_A Antibiotic resistance p 65.9 2.3 8E-05 35.4 1.7 18 136-153 5-22 (183)
384 1zak_A Adenylate kinase; ATP:A 65.8 2.9 0.0001 36.2 2.4 17 137-153 6-22 (222)
385 3be4_A Adenylate kinase; malar 65.5 2.9 9.8E-05 36.2 2.3 18 136-153 5-22 (217)
386 3nwj_A ATSK2; P loop, shikimat 65.5 4.6 0.00016 36.0 3.6 19 135-153 47-65 (250)
387 3uie_A Adenylyl-sulfate kinase 65.5 3.2 0.00011 35.3 2.6 19 135-153 24-42 (200)
388 3eiq_A Eukaryotic initiation f 65.5 32 0.0011 32.5 10.1 92 326-420 86-192 (414)
389 2plr_A DTMP kinase, probable t 65.4 2.4 8.3E-05 36.2 1.8 18 136-153 4-21 (213)
390 1zu4_A FTSY; GTPase, signal re 65.3 6.6 0.00022 36.4 4.8 18 137-154 106-123 (320)
391 2pez_A Bifunctional 3'-phospho 65.3 2.6 8.9E-05 35.1 1.9 18 136-153 5-22 (179)
392 1cke_A CK, MSSA, protein (cyti 65.2 2.7 9.4E-05 36.4 2.1 17 137-153 6-22 (227)
393 1tf5_A Preprotein translocase 65.0 21 0.00072 37.5 8.9 69 343-417 123-209 (844)
394 2pbr_A DTMP kinase, thymidylat 65.0 2.9 9.9E-05 35.1 2.2 16 138-153 2-17 (195)
395 2if2_A Dephospho-COA kinase; a 64.9 2.8 9.5E-05 35.7 2.1 16 138-153 3-18 (204)
396 3lnc_A Guanylate kinase, GMP k 64.6 2.4 8.3E-05 37.1 1.6 21 133-153 24-44 (231)
397 2v6i_A RNA helicase; membrane, 64.5 9.3 0.00032 37.0 6.0 67 173-249 171-238 (431)
398 2wv9_A Flavivirin protease NS2 64.5 12 0.00042 38.5 7.1 68 173-250 410-478 (673)
399 3tlx_A Adenylate kinase 2; str 64.4 3.1 0.00011 36.8 2.4 18 136-153 29-46 (243)
400 1v5w_A DMC1, meiotic recombina 64.4 3.8 0.00013 38.5 3.0 57 137-196 123-180 (343)
401 2iut_A DNA translocase FTSK; n 64.3 7.8 0.00027 38.9 5.4 25 137-161 215-239 (574)
402 1ukz_A Uridylate kinase; trans 64.3 3 0.0001 35.5 2.1 16 138-153 17-32 (203)
403 2wwf_A Thymidilate kinase, put 64.3 3.1 0.00011 35.6 2.2 19 135-153 9-27 (212)
404 1ak2_A Adenylate kinase isoenz 64.2 3.3 0.00011 36.3 2.4 18 136-153 16-33 (233)
405 3c8u_A Fructokinase; YP_612366 64.1 2.8 9.6E-05 36.0 1.9 18 136-153 22-39 (208)
406 1jjv_A Dephospho-COA kinase; P 64.1 3 0.0001 35.6 2.1 16 138-153 4-19 (206)
407 2xb4_A Adenylate kinase; ATP-b 63.7 3.1 0.00011 36.2 2.2 16 138-153 2-17 (223)
408 2v3c_C SRP54, signal recogniti 63.7 6.1 0.00021 38.3 4.4 21 137-157 100-120 (432)
409 2jlq_A Serine protease subunit 63.5 14 0.00049 35.9 7.2 68 173-250 188-256 (451)
410 1f2t_A RAD50 ABC-ATPase; DNA d 63.5 3.3 0.00011 33.5 2.1 15 138-152 25-39 (149)
411 1s96_A Guanylate kinase, GMP k 63.2 3.5 0.00012 35.9 2.4 19 135-153 15-33 (219)
412 3asz_A Uridine kinase; cytidin 63.2 3 0.0001 35.7 2.0 17 137-153 7-23 (211)
413 1nn5_A Similar to deoxythymidy 63.0 3.4 0.00012 35.4 2.3 18 136-153 9-26 (215)
414 2oca_A DAR protein, ATP-depend 62.9 97 0.0033 30.2 13.4 77 173-256 347-427 (510)
415 1xjc_A MOBB protein homolog; s 62.2 9.8 0.00033 31.5 4.8 23 138-161 6-28 (169)
416 3a4m_A L-seryl-tRNA(SEC) kinas 62.0 3.4 0.00012 37.0 2.1 16 138-153 6-21 (260)
417 4a74_A DNA repair and recombin 61.7 3.3 0.00011 35.9 2.0 20 134-153 23-42 (231)
418 2z0h_A DTMP kinase, thymidylat 61.7 3.6 0.00012 34.7 2.1 15 139-153 3-17 (197)
419 3b9q_A Chloroplast SRP recepto 61.7 7.8 0.00027 35.5 4.6 19 135-153 99-117 (302)
420 3k1j_A LON protease, ATP-depen 61.6 6.2 0.00021 40.3 4.3 23 131-153 55-77 (604)
421 1nij_A Hypothetical protein YJ 61.5 7.6 0.00026 35.9 4.5 13 139-151 7-19 (318)
422 3o8b_A HCV NS3 protease/helica 61.1 14 0.00048 37.9 6.7 67 172-250 395-461 (666)
423 2v9p_A Replication protein E1; 61.0 4.7 0.00016 37.1 2.9 20 134-153 124-143 (305)
424 3vkg_A Dynein heavy chain, cyt 61.0 20 0.00067 43.9 8.7 46 107-153 874-923 (3245)
425 1c9k_A COBU, adenosylcobinamid 60.6 6 0.00021 33.2 3.3 34 139-185 2-35 (180)
426 1j8m_F SRP54, signal recogniti 60.6 9.3 0.00032 34.9 4.9 19 137-155 99-117 (297)
427 3cmw_A Protein RECA, recombina 60.4 9.8 0.00034 43.5 5.8 42 134-184 32-73 (1706)
428 3kta_A Chromosome segregation 60.3 5.1 0.00017 33.3 2.9 16 138-153 28-43 (182)
429 3tif_A Uncharacterized ABC tra 60.1 3.7 0.00013 36.1 2.0 17 135-151 30-46 (235)
430 3pxi_A Negative regulator of g 60.0 4.9 0.00017 42.3 3.3 24 137-161 202-225 (758)
431 3fmo_B ATP-dependent RNA helic 60.0 12 0.0004 34.2 5.5 89 326-421 140-245 (300)
432 4a2p_A RIG-I, retinoic acid in 60.0 15 0.0005 36.6 6.7 73 344-420 55-139 (556)
433 1uf9_A TT1252 protein; P-loop, 59.9 3.7 0.00013 34.7 2.0 16 138-153 10-25 (203)
434 1nkt_A Preprotein translocase 59.5 28 0.00097 36.8 8.6 69 343-417 151-237 (922)
435 2xau_A PRE-mRNA-splicing facto 59.4 34 0.0012 35.9 9.5 73 173-251 303-393 (773)
436 2bbw_A Adenylate kinase 4, AK4 59.4 4 0.00014 36.0 2.1 18 136-153 27-44 (246)
437 3umf_A Adenylate kinase; rossm 59.3 5.4 0.00018 34.6 2.8 17 137-153 30-46 (217)
438 3cmu_A Protein RECA, recombina 59.3 7.5 0.00026 45.2 4.7 48 133-190 1078-1125(2050)
439 2vhj_A Ntpase P4, P4; non- hyd 59.2 4.3 0.00015 37.6 2.3 23 135-157 122-144 (331)
440 2p5t_B PEZT; postsegregational 59.0 3.1 0.00011 37.0 1.4 16 138-153 34-49 (253)
441 1q0u_A Bstdead; DEAD protein, 58.6 7.6 0.00026 33.4 3.8 73 344-420 72-159 (219)
442 3bs4_A Uncharacterized protein 58.6 13 0.00043 33.3 5.2 51 137-197 22-72 (260)
443 1ry6_A Internal kinesin; kines 58.5 6.2 0.00021 37.2 3.3 19 135-153 82-102 (360)
444 1q57_A DNA primase/helicase; d 58.5 5.9 0.0002 39.3 3.4 54 133-195 239-292 (503)
445 2grj_A Dephospho-COA kinase; T 58.4 4.4 0.00015 34.4 2.1 15 139-153 15-29 (192)
446 1ypw_A Transitional endoplasmi 58.3 3.9 0.00013 43.3 2.1 57 97-153 472-528 (806)
447 2cbz_A Multidrug resistance-as 58.1 4.2 0.00015 35.8 2.0 18 134-151 29-46 (237)
448 2i3b_A HCR-ntpase, human cance 58.0 6.6 0.00023 33.2 3.2 41 243-286 103-145 (189)
449 4a2q_A RIG-I, retinoic acid in 57.7 21 0.00071 37.7 7.6 73 344-420 296-380 (797)
450 4akg_A Glutathione S-transfera 57.6 4.3 0.00015 48.7 2.4 21 133-153 1264-1284(2695)
451 2va8_A SSO2462, SKI2-type heli 57.4 31 0.0011 35.7 8.9 73 173-251 252-362 (715)
452 2ipc_A Preprotein translocase 57.4 25 0.00086 37.3 7.8 53 343-401 119-176 (997)
453 3tbk_A RIG-I helicase domain; 57.2 13 0.00046 36.8 5.9 73 344-420 52-136 (555)
454 4f4c_A Multidrug resistance pr 57.1 8.1 0.00028 43.4 4.5 38 243-280 570-607 (1321)
455 3ice_A Transcription terminati 57.0 16 0.00053 34.9 5.7 27 127-153 162-191 (422)
456 1vht_A Dephospho-COA kinase; s 56.7 4.8 0.00016 34.7 2.1 16 138-153 6-21 (218)
457 3qf7_A RAD50; ABC-ATPase, ATPa 56.6 6.5 0.00022 37.2 3.2 16 138-153 25-40 (365)
458 1htw_A HI0065; nucleotide-bind 56.5 4.3 0.00015 33.2 1.6 18 134-151 31-48 (158)
459 2og2_A Putative signal recogni 56.5 11 0.00039 35.4 4.8 16 138-153 159-174 (359)
460 4e22_A Cytidylate kinase; P-lo 56.3 6.7 0.00023 34.8 3.1 18 136-153 27-44 (252)
461 1sgw_A Putative ABC transporte 56.1 5.1 0.00017 34.7 2.1 18 134-151 33-50 (214)
462 1rz3_A Hypothetical protein rb 55.9 4.9 0.00017 34.2 2.0 16 138-153 24-39 (201)
463 3qks_A DNA double-strand break 55.8 8 0.00027 33.0 3.4 16 138-153 25-40 (203)
464 1np6_A Molybdopterin-guanine d 55.7 8.3 0.00028 32.1 3.3 15 138-152 8-22 (174)
465 2xxa_A Signal recognition part 55.7 10 0.00035 36.8 4.4 20 138-157 102-121 (433)
466 3gk5_A Uncharacterized rhodane 55.6 12 0.0004 28.1 3.9 45 334-378 45-90 (108)
467 2z0m_A 337AA long hypothetical 55.4 56 0.0019 29.6 9.6 87 325-418 39-136 (337)
468 3auy_A DNA double-strand break 55.2 4.8 0.00016 38.2 2.0 16 138-153 27-42 (371)
469 3zq6_A Putative arsenical pump 55.2 12 0.00041 34.6 4.7 33 139-180 17-49 (324)
470 1odf_A YGR205W, hypothetical 3 55.2 5.2 0.00018 36.5 2.1 15 139-153 34-48 (290)
471 2woo_A ATPase GET3; tail-ancho 55.2 13 0.00043 34.6 4.9 33 139-180 22-54 (329)
472 2pze_A Cystic fibrosis transme 54.9 5 0.00017 35.1 2.0 18 134-151 32-49 (229)
473 1uj2_A Uridine-cytidine kinase 54.8 5.3 0.00018 35.4 2.1 16 138-153 24-39 (252)
474 2ff7_A Alpha-hemolysin translo 54.7 5.1 0.00017 35.6 2.0 18 134-151 33-50 (247)
475 3gfo_A Cobalt import ATP-bindi 54.6 5 0.00017 36.3 1.9 17 135-151 33-49 (275)
476 2dhr_A FTSH; AAA+ protein, hex 54.5 5.1 0.00018 39.7 2.1 54 97-153 26-81 (499)
477 2jeo_A Uridine-cytidine kinase 54.4 4.8 0.00016 35.5 1.8 17 137-153 26-42 (245)
478 3tqf_A HPR(Ser) kinase; transf 54.4 6.7 0.00023 32.7 2.4 19 135-153 15-33 (181)
479 2ghi_A Transport protein; mult 54.0 5.4 0.00018 35.7 2.0 18 134-151 44-61 (260)
480 1ltq_A Polynucleotide kinase; 53.7 5.5 0.00019 36.3 2.1 16 138-153 4-19 (301)
481 2pcj_A ABC transporter, lipopr 53.6 5.2 0.00018 34.9 1.8 17 135-151 29-45 (224)
482 2whx_A Serine protease/ntpase/ 53.4 26 0.0009 35.6 7.3 68 173-250 355-423 (618)
483 1ypw_A Transitional endoplasmi 53.4 4.6 0.00016 42.8 1.7 19 135-153 237-255 (806)
484 1tf7_A KAIC; homohexamer, hexa 53.3 13 0.00044 37.1 4.9 52 133-194 278-329 (525)
485 3ake_A Cytidylate kinase; CMP 53.1 6 0.00021 33.6 2.1 16 138-153 4-19 (208)
486 3cf2_A TER ATPase, transitiona 53.1 5.5 0.00019 41.9 2.2 17 137-153 239-255 (806)
487 4g1u_C Hemin import ATP-bindin 52.9 5.6 0.00019 35.8 1.9 17 135-151 36-52 (266)
488 1byi_A Dethiobiotin synthase; 52.6 16 0.00056 31.3 4.9 33 140-181 6-38 (224)
489 2f6r_A COA synthase, bifunctio 52.5 5.7 0.0002 36.0 2.0 17 138-154 77-93 (281)
490 1g6h_A High-affinity branched- 52.4 5.8 0.0002 35.4 2.0 17 135-151 32-48 (257)
491 2f1r_A Molybdopterin-guanine d 52.4 4 0.00014 33.9 0.8 16 138-153 4-19 (171)
492 1tf7_A KAIC; homohexamer, hexa 52.3 11 0.00037 37.7 4.1 31 132-162 35-65 (525)
493 2yhs_A FTSY, cell division pro 52.2 12 0.00041 36.8 4.3 15 139-153 296-310 (503)
494 3r20_A Cytidylate kinase; stru 52.1 6.4 0.00022 34.6 2.1 17 137-153 10-26 (233)
495 1b0u_A Histidine permease; ABC 52.1 6 0.00021 35.4 2.0 17 135-151 31-47 (262)
496 1ji0_A ABC transporter; ATP bi 52.0 6 0.0002 34.9 2.0 17 135-151 31-47 (240)
497 3ug7_A Arsenical pump-driving 52.0 14 0.00048 34.6 4.7 33 139-180 29-61 (349)
498 1r6b_X CLPA protein; AAA+, N-t 51.7 5.7 0.00019 41.8 2.0 16 138-153 490-505 (758)
499 3tqc_A Pantothenate kinase; bi 51.6 9.8 0.00033 35.2 3.4 15 139-153 95-109 (321)
500 1mv5_A LMRA, multidrug resista 51.5 5.3 0.00018 35.3 1.5 17 135-151 27-43 (243)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.9e-56 Score=443.69 Aligned_cols=350 Identities=33% Similarity=0.514 Sum_probs=308.8
Q ss_pred CccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCc
Q 011908 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 174 (475)
+.+..+|+++++++.+++.+.+.|+.+||++|.++|+.++++++++++++||||||++|+++++..+...... ....++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~ 130 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRP 130 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCC
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCc
Confidence 3455679999999999999999999999999999999999999999999999999999999999998764321 123477
Q ss_pred eEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEe
Q 011908 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (475)
Q Consensus 175 ~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiD 252 (475)
+++|++||++|+.|+++.++++.. ++.+.+++||.....+...+..+++|+|+||++|.+.+.+....+.+++++|+|
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 899999999999999999999875 567788899999888888888889999999999999999888889999999999
Q ss_pred ccccccccCcHHHHHHHHHhC--CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcch
Q 011908 253 EADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (475)
Q Consensus 253 E~H~~~~~~~~~~~~~il~~~--~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (475)
|+|++.+++|...+..++..+ +++.|++++|||+++.+..+...++.++..+..... ......+...........|
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k 288 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV--GGACSDVKQTIYEVNKYAK 288 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST--TCCCTTEEEEEEECCGGGH
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc--cccccccceEEEEeCcHHH
Confidence 999999999999999999875 578899999999999999999999988877765332 2233445555666667778
Q ss_pred hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCC
Q 011908 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDV 409 (475)
Q Consensus 331 ~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDi 409 (475)
...+..++.... .++||||++++.++.+++.|.+ ++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+
T Consensus 289 ~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi 366 (434)
T 2db3_A 289 RSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI 366 (434)
T ss_dssp HHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCC
T ss_pred HHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCc
Confidence 888888887753 4599999999999999999954 6899999999999999999999999999999999999999999
Q ss_pred CCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhh
Q 011908 410 PNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADL 449 (475)
Q Consensus 410 p~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~ 449 (475)
|++++||+||.|.+...|+ +||+||.|+.|.+++|+++++
T Consensus 367 ~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 367 KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred ccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 9999999999999999999 999999999999999999653
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-54 Score=429.62 Aligned_cols=361 Identities=32% Similarity=0.504 Sum_probs=309.2
Q ss_pred CccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhc-------
Q 011908 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK------- 167 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~------- 167 (475)
+.+..+|+++++++.+.+.|...++.+||++|.++++.+..++++++++|||||||++|++++++.+......
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 3445679999999999999999999999999999999999999999999999999999999999988653211
Q ss_pred -----cCCCCCceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC
Q 011908 168 -----HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240 (475)
Q Consensus 168 -----~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~ 240 (475)
.....+++++|++||++|+.|+++.++++.. ++.+..++|+.........+..+++|+|+||++|.+.+....
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC
Confidence 0112347899999999999999999998764 567788889988887777777889999999999999998888
Q ss_pred CCCCCccEEEEeccccccccCcHHHHHHHHHhC--CC--CCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccC
Q 011908 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316 (475)
Q Consensus 241 ~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~--~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (475)
+.+.+++++|+||+|++.+++|...+..++... +. ..|+++||||+++.+..+...++.++..+..... .....
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 248 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV--GSTSE 248 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCS
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC--CCCcc
Confidence 888999999999999999999999999988743 32 5789999999999999888889888877654322 22334
Q ss_pred CeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCc
Q 011908 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (475)
Q Consensus 317 ~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~ 395 (475)
.+..........++...+..+++....++++||||+++++++.+++.|.+ ++.+..+||+++.++|.++++.|++|+.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 45556666677778888889998877788999999999999999999954 68999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCc
Q 011908 396 ILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPL 457 (475)
Q Consensus 396 vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~ 457 (475)
|||||+++++|+|+|++++||++++|.+...|+ +||+||.|+.|.|++++++.+........
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 392 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 392 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHH
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHH
Confidence 999999999999999999999999999999998 89999999999999999998886544433
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.7e-53 Score=421.26 Aligned_cols=362 Identities=32% Similarity=0.528 Sum_probs=310.7
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceE
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 176 (475)
...+|+++++++.+.+.+.+.|+.+|+++|.++++.+++++++++++|||||||++|++++++.+.. ...+.++
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 108 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQA 108 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCCE
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCCceE
Confidence 3457999999999999999999999999999999999999999999999999999999999887632 1346789
Q ss_pred EEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011908 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 177 lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~ 254 (475)
+|++||++|+.|+++.+.++.. ++.+..+.|+.........+..+++|+|+||+++.+.+.+....+.+++++|+||+
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence 9999999999999999999875 45677778888888777777778999999999999999888888889999999999
Q ss_pred ccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccC-cchhhH
Q 011908 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM-YEKPSI 333 (475)
Q Consensus 255 H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~ 333 (475)
|++.++++...+..++..+++..|++++|||+++.+..+...++.++..+.... .......+......... ..+...
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKR--DELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCG--GGCSCTTEEEEEEEESSTTHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecC--ccccCCCceEEEEEeCcHHhHHHH
Confidence 999999999999999999999999999999999988888888888887665422 22223334444444433 337777
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~ 412 (475)
+..++... ..+++||||++++.++.+++.|.+ ++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 267 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 267 LCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp HHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccC
Confidence 88887776 456999999999999999999954 6899999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhhhhhhhccC
Q 011908 413 DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETCTMTWVAGL 471 (475)
Q Consensus 413 ~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (475)
++||+++.|.+...|+ +||+||.|+.|.|+.++++++.. .+++++++....+..+
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~----~~~~i~~~~~~~~~~~ 402 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR----ILRDIEQYYSTQIDEM 402 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH----HHHHHHHHTTCCCEEC
T ss_pred CEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHH----HHHHHHHHhCCCceec
Confidence 9999999999999988 89999999999999999998876 4566777665554443
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.3e-51 Score=410.01 Aligned_cols=347 Identities=29% Similarity=0.494 Sum_probs=302.1
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCce
Q 011908 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 175 (475)
....+|+++++++.+.+.+.+.|+.+|+++|.++++.+.+++++++++|||||||++|+++++..+.. ...+.+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 91 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQ 91 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh------ccCCcc
Confidence 34567999999999999999999999999999999999999999999999999999999999887632 124668
Q ss_pred EEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011908 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE 253 (475)
++|++|+++|+.|+++.+.+++. ++.+..+.|+............+++|+|+||+++.+.+......+.+++++|+||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999876 5667778888887766666677799999999999998888777789999999999
Q ss_pred cccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhH
Q 011908 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (475)
+|++.+.++...+..++..+++..++++||||+++.+......++..+..+..... .....+..+........+...
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~ 248 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVEERQKLHC 248 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS---CBCTTEEEEEEECCGGGHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc---cccCCceeEEEEechhhHHHH
Confidence 99998888888899999888889999999999999998888888888776644322 223344555566666677778
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~ 412 (475)
+..+++.. .++++||||+++++++.+++.|.+ ++.+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 249 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~ 327 (400)
T 1s2m_A 249 LNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 327 (400)
T ss_dssp HHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTE
T ss_pred HHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCC
Confidence 88887765 567999999999999999999964 6899999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhh
Q 011908 413 DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 413 ~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~ 452 (475)
++||++++|.+...|+ +||+||.|+.|.|+.++++++...
T Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 328 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp EEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred CEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 9999999999999988 899999999999999999988764
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.9e-51 Score=403.14 Aligned_cols=344 Identities=24% Similarity=0.413 Sum_probs=298.7
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
.+|+++++++.+.+.|.+.|+.+|+++|.++++.+..++++++++|||+|||++|+++++..+.. ...+.+++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~li 81 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLV 81 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC------CTTCCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc------cCCCeeEEE
Confidence 45888999999999999999999999999999999999999999999999999999999877632 123568999
Q ss_pred EeCCHHhHHHHHHHHHHhCC---CCceEEEEcCCChhHHHHHhhCC-CCEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011908 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 179 l~Pt~~La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~ 254 (475)
++||++|+.|+++.+.++.. ++.+..+.|+.........+..+ ++|+|+||+++...+......+.+++++|+||+
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 99999999999999998763 67788888888876665555444 799999999999999888888899999999999
Q ss_pred cccccc-CcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhH
Q 011908 255 DQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (475)
Q Consensus 255 H~~~~~-~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (475)
|++.++ ++...+..++...++..|++++|||+++........++.++..+...... ......+...........+...
T Consensus 162 H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 162 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET-KLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC-CCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc-ccCcccceEEEEEcCchhHHHH
Confidence 999874 67788888898888899999999999999999999999888877653322 2223345556666667777888
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~ 412 (475)
+..+++.. .++++||||+++++++.+++.|.. ++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 241 l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 241 LFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred HHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 88888776 678999999999999999999954 6889999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhh
Q 011908 413 DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 413 ~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
++||++++|.+...|+ +||+||.|+.|.|++++++++.
T Consensus 320 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 320 NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp EEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred CEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 9999999999999998 8999999999999999997654
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1e-51 Score=412.72 Aligned_cols=362 Identities=30% Similarity=0.479 Sum_probs=293.1
Q ss_pred CCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCC
Q 011908 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 173 (475)
+.....+|+++++++.+.+.+.+.++.+|+++|.++++.++.++++++++|||||||++|+++++..+.. ...+
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~ 108 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKA 108 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------TSCS
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------cCCc
Confidence 3344567889999999999999999999999999999999999999999999999999999999987633 1246
Q ss_pred ceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhh-CCCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 174 ~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
.+++|++||++|+.|+++.+.+++. +..+..+.|+.........+. .+++|+|+||+++.+.+....+.+.+++++|
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 7899999999999999999999864 556677778877766665555 5689999999999999988888888999999
Q ss_pred EeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEe-ccCcc
Q 011908 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYE 329 (475)
Q Consensus 251 iDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 329 (475)
+||+|++.++++...+..++..++++.|+++||||+++........++.++..+..... ......+...... .....
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 266 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE--ELTLEGIRQFYINVEREEW 266 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCC--CCCTTSCCEEEEECSSSTT
T ss_pred EECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCC--ccCCCCceEEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999888877654322 2222333333333 33444
Q ss_pred hhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCC
Q 011908 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (475)
Q Consensus 330 k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiD 408 (475)
+...+..+++.. ..+++||||+++++++.+++.|.. ++.+..+||+|++.+|.++++.|++|+.+|||||+++++|+|
T Consensus 267 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 267 KLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp HHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred HHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 777888887766 567999999999999999999965 689999999999999999999999999999999999999999
Q ss_pred CCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhhhhhhh
Q 011908 409 VPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETCTMTWV 468 (475)
Q Consensus 409 ip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
+|++++||+++.|.+...|+ +||+||.|+.|.|+.++++++... ++.++++...-+
T Consensus 346 ip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~----~~~~~~~~~~~~ 403 (414)
T 3eiq_A 346 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRT----LRDIETFYNTSI 403 (414)
T ss_dssp GGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHH----HHHHHHHTTCCC
T ss_pred ccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHH----HHHHHHHHcCCc
Confidence 99999999999999999998 888888888899999999988764 445555544433
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-50 Score=397.47 Aligned_cols=350 Identities=33% Similarity=0.540 Sum_probs=298.9
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC-CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCce
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 175 (475)
+..+|+++++++.+.+.|.+.|+.+|+++|.++++.++++ +++++++|||||||++++++++..+.. ..+.+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~ 76 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIE 76 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCC
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCc
Confidence 3456889999999999999999999999999999999988 689999999999999999998877633 34678
Q ss_pred EEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011908 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE 253 (475)
++|++|+++|+.|+++.+.++++ ++.+..+.|+.........+. +++|+|+||+++.+.+......+.+++++|+||
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 99999999999999999999865 566777788877665555444 579999999999999988877889999999999
Q ss_pred cccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhH
Q 011908 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSI 333 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (475)
+|++.++++...+..++..+++..++++||||+++........++.++..+.... ...+..........++...
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 229 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI------NANIEQSYVEVNENERFEA 229 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS------SSSSEEEEEECCGGGHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC------CCCceEEEEEeChHHHHHH
Confidence 9999999999999999999989999999999999988888888887766554321 1234455555566667777
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~ 412 (475)
+..+++ ..+.+++|||+++++++.+++.|.+ ++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 230 l~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~ 307 (367)
T 1hv8_A 230 LCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDL 307 (367)
T ss_dssp HHHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCC
T ss_pred HHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccC
Confidence 777765 3577999999999999999999964 6899999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCCCchhhhhhhhh
Q 011908 413 DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGSPLKEVETCTMT 466 (475)
Q Consensus 413 ~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
++||+++.|.+...|+ .||+||.|+.|.++.++++.+... +..+++....
T Consensus 308 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~----~~~i~~~~~~ 359 (367)
T 1hv8_A 308 NCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKK----LRYIERAMKL 359 (367)
T ss_dssp SEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH----HHHHHHHHTC
T ss_pred CEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHH----HHHHHHHhCC
Confidence 9999999999999988 888888888899999999988763 4445554433
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.9e-50 Score=418.07 Aligned_cols=344 Identities=28% Similarity=0.447 Sum_probs=283.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhh--cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
+++.+.+.+.+.|+.+||++|.++++.++ .++++++++|||||||++|++|++..+...... ...+++++|++||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTR 105 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--ccCCCeEEEEcchH
Confidence 89999999999999999999999999999 678999999999999999999999988764321 13367899999999
Q ss_pred HhHHHHHHHHHHhC------CCCceEEEEcCCChhHHHHHhh-CCCCEEEEccHHHHHHHHhC-CCCCCCccEEEEeccc
Q 011908 184 ELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEAD 255 (475)
Q Consensus 184 ~La~Q~~~~l~~~~------~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~-~~~~~~l~~vIiDE~H 255 (475)
+|+.|+++.+.+++ +...+..+.|+.........+. .+++|+|+||++|.+.+.+. ...+.+++++|+||+|
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 185 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 185 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChH
Confidence 99999999999864 3456777888888776666554 36899999999999888664 3457889999999999
Q ss_pred cccccCcHHHHHHHHHhCC-------CCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCC--cccccCCeEEEEEecc
Q 011908 256 QMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS--DQKLADGISLYSIATS 326 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~~-------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 326 (475)
++.+++|...+..++..++ .++|+++||||+++.+..+...++..+..+.+.... .......+........
T Consensus 186 ~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (579)
T 3sqw_A 186 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 265 (579)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEec
Confidence 9999999999988876653 367999999999999999988888887766543321 1222233333333333
Q ss_pred C-cc-hhhHHHH---HHHhhcCCCcEEEEeCChHHHHHHHHHHHc----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEE
Q 011908 327 M-YE-KPSIIGQ---LITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (475)
Q Consensus 327 ~-~~-k~~~l~~---~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vL 397 (475)
. .. ....+.. .+.....+.++||||++++.++.++..|.+ ++.+..+||+|++.+|.++++.|++|+.+||
T Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vL 345 (579)
T 3sqw_A 266 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 345 (579)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred chhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEE
Confidence 2 21 2223333 333334578999999999999999999964 6889999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 398 IATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 398 vaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
|||+++++|+|+|++++||++++|.+...|+ +||+||.|+.|.|++++.+++..
T Consensus 346 VaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 346 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred EEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHH
Confidence 9999999999999999999999999999999 89999999999999999998875
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.1e-49 Score=397.79 Aligned_cols=342 Identities=27% Similarity=0.418 Sum_probs=285.7
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCC
Q 011908 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 173 (475)
....+|+++++++.+.+.+.+.|+..|+++|.++++.++.+ +++++++|||||||++|+++++..+.. ...+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~ 95 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKY 95 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCS
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh------cCCC
Confidence 34567899999999999999999999999999999999987 899999999999999999999987643 1335
Q ss_pred ceEEEEeCCHHhHHHHHHHHHHhCC---CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh-CCCCCCCccEE
Q 011908 174 PLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFV 249 (475)
Q Consensus 174 ~~~lil~Pt~~La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~l~~v 249 (475)
++++|++||++|+.|+++.+.++.. ++.+....++...... ....++|+|+||+++.+.+.. ..+.+.+++++
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 6899999999999999998888754 5666666666553322 133479999999999998865 55667899999
Q ss_pred EEeccccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEec-cC
Q 011908 250 VLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SM 327 (475)
Q Consensus 250 IiDE~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 327 (475)
|+||+|++.+ .++...+..++..++.+.|+++||||+++....+...++.++..+..... ......+....... ..
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGG--GSSCTTEEEEEEECSSH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccc--cccccCceEEEEEcCCh
Confidence 9999999886 67888888999999999999999999999999999999988887755332 22233344444333 33
Q ss_pred cchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q 011908 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 328 ~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~G 406 (475)
..+...+..++... .++++||||+++++++.+++.|.. ++.+..+||+|+..+|.++++.|++|+.+|||||+++++|
T Consensus 251 ~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 329 (412)
T 3fht_A 251 DEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 329 (412)
T ss_dssp HHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSS
T ss_pred HHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccC
Confidence 45666777777665 567999999999999999999964 6899999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEecCCCCC------hhHHH--hhccCCCCCCCcEEEeeChhh
Q 011908 407 LDVPNVDLVELVVLERK------EVQFL--STQISRPGKSRVLSEMLDADL 449 (475)
Q Consensus 407 iDip~~~~vI~~~~~~~------~~~~~--~gR~gR~g~~~~~~~~~~~~~ 449 (475)
+|+|++++||+++.|.+ ...|+ +||+||.|+.|.|++++++++
T Consensus 330 idip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 330 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp CCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 99999999999999954 45666 888888888999999998765
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.3e-50 Score=416.46 Aligned_cols=345 Identities=28% Similarity=0.445 Sum_probs=282.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhh--cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
+++.+.+.+.+.|+.+||++|.++++.++ .++++++++|||||||++|+++++..+...... ...+++++|++||+
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTR 156 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCeeEEEEcCcH
Confidence 99999999999999999999999999999 668999999999999999999999998764322 12356899999999
Q ss_pred HhHHHHHHHHHHhC------CCCceEEEEcCCChhHHHHHh-hCCCCEEEEccHHHHHHHHhC-CCCCCCccEEEEeccc
Q 011908 184 ELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEAD 255 (475)
Q Consensus 184 ~La~Q~~~~l~~~~------~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~-~~~~~~l~~vIiDE~H 255 (475)
+|+.|+++.+++++ ....+..+.|+.........+ ..+++|+|+||+++.+.+.+. ...+++++++|+||+|
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH
Confidence 99999999999853 245577778888766665555 346899999999999888664 3357889999999999
Q ss_pred cccccCcHHHHHHHHHhC-------CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCC--cccccCCeEEEEEecc
Q 011908 256 QMLSVGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS--DQKLADGISLYSIATS 326 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 326 (475)
++.+++|...+..++..+ +.++|+++||||+++.+..+...++..+..+.+.... .......+........
T Consensus 237 ~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (563)
T 3i5x_A 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 316 (563)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECc
Confidence 999999999988887665 2367899999999999999888888887766543222 1222233333333332
Q ss_pred C-cch-hhHHH---HHHHhhcCCCcEEEEeCChHHHHHHHHHHHc----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEE
Q 011908 327 M-YEK-PSIIG---QLITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (475)
Q Consensus 327 ~-~~k-~~~l~---~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vL 397 (475)
. ..+ ...+. ..+.....+.++||||+++..++.++..|.+ ++.+..+||+|++.+|.++++.|++|+.+||
T Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 317 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGIL 396 (563)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEE
T ss_pred hhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEE
Confidence 2 222 22222 2333335678999999999999999999964 6889999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhh
Q 011908 398 IATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 398 vaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~ 452 (475)
|||+++++|+|+|++++||+++.|.+...|+ +||+||.|+.|.|++++.+++...
T Consensus 397 vaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~ 453 (563)
T 3i5x_A 397 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 453 (563)
T ss_dssp EECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHH
T ss_pred EEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHH
Confidence 9999999999999999999999999999998 899999999999999999988753
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.2e-49 Score=391.10 Aligned_cols=340 Identities=27% Similarity=0.458 Sum_probs=285.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCce
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 175 (475)
..+|+++++++.+.+.+.+.++.+|+++|.++++.++.+ +++++++|||||||++|+++++..+.. ...+++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 77 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------EDASPQ 77 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TCCSCC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------CCCCcc
Confidence 356889999999999999999999999999999999988 899999999999999999999887633 134678
Q ss_pred EEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011908 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE 253 (475)
++|++||++|+.|+++.++++.. ++.+....++...... ..+++|+|+||+++.+.+.+....+.+++++|+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999764 4455555555432221 23589999999999999988888889999999999
Q ss_pred cccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEec-cCcchh
Q 011908 254 ADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKP 331 (475)
Q Consensus 254 ~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~ 331 (475)
+|++.+ .++...+..+...++++.|++++|||+++.+..+...++.++..+..... .............. ....+.
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN--EVNVDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG--GCSCTTEEEEEEECSSHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc--ccccccccEEEEEcCchHHHH
Confidence 999887 67888888999999899999999999999999999888888777654322 22223333333333 334556
Q ss_pred hHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC
Q 011908 332 SIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVP 410 (475)
Q Consensus 332 ~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip 410 (475)
..+..++... .++++||||+++++++.+++.|.. +..+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|
T Consensus 232 ~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 232 DVLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIP 310 (395)
T ss_dssp HHHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcc
Confidence 6666666554 567999999999999999999964 68999999999999999999999999999999999999999999
Q ss_pred CCCEEEecCCCC------ChhHHH--hhccCCCCCCCcEEEeeChhhh
Q 011908 411 NVDLVELVVLER------KEVQFL--STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 411 ~~~~vI~~~~~~------~~~~~~--~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
++++||+++.|. +...|+ +||+||.|+.|.|++++.+++.
T Consensus 311 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp TEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred cCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 999999999998 778887 8889998889999999987554
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.6e-51 Score=405.92 Aligned_cols=347 Identities=29% Similarity=0.478 Sum_probs=179.6
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceE
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 176 (475)
....|+++++++.+.+.+.+.|+.+|+++|.++++.+..++++++++|||+|||++|+++++..+.. ...++++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 92 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 92 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------cCCCCCE
Confidence 3456889999999999999999999999999999999999999999999999999999999887633 1346789
Q ss_pred EEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011908 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 177 lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~ 254 (475)
+|++|+++|+.|+++.+.++.. ++.+..+.|+.........+. +++|+|+||+++...+......+.+++++|+||+
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEa 171 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 171 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEECh
Confidence 9999999999999999999875 567777888877665544444 5799999999999999887777889999999999
Q ss_pred ccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEec-cCcchhhH
Q 011908 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT-SMYEKPSI 333 (475)
Q Consensus 255 H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~ 333 (475)
|++.++++...+..++..+++..++++||||+++........++..+..+....... ....+....... ....+...
T Consensus 172 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 172 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL--TLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------
T ss_pred HHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc--cCCCceEEEEEcCchhhHHHH
Confidence 999988899999999999999999999999999998888888888887776533211 112222222222 22235566
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~ 412 (475)
+..+++.. .+++++|||+++++++.+++.|.+ ++.+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 250 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~ 328 (394)
T 1fuu_A 250 LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccC
Confidence 66666554 467999999999999999999954 5789999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhc
Q 011908 413 DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQ 453 (475)
Q Consensus 413 ~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~ 453 (475)
++||++++|.+...|+ +||+||.|+.|.|+.++++++...+
T Consensus 329 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 371 (394)
T 1fuu_A 329 SLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAM 371 (394)
T ss_dssp -------------------------------------------
T ss_pred CEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHH
Confidence 9999999999998888 8888888889999999999887643
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.7e-48 Score=375.94 Aligned_cols=321 Identities=31% Similarity=0.516 Sum_probs=271.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
+++.+.+.+.+.|+.+|+++|.++++.+.+++++++++|||+|||++|+++++.. +.+++|++|+++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHH
Confidence 4789999999999999999999999999999999999999999999998888753 5679999999999
Q ss_pred HHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcH
Q 011908 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 186 a~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~ 263 (475)
+.|+++.++++.. +..+..+.|+.........+. .++|+|+||+++.+.+......+.+++++|+||+|++.++++.
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 9999999998765 566777788877666555544 3899999999999988887777889999999999999999999
Q ss_pred HHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcC
Q 011908 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAK 343 (475)
Q Consensus 264 ~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 343 (475)
..+..++...+...+++++|||+++........++.++..+... .................+ ..+ ..+.. ..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~~ 219 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWR-SKV-QALRE-NK 219 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSH-HHH-HHHHT-CC
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHH-HHH-HHHHh-CC
Confidence 99999999999899999999999999988888888877665421 111223333333332222 222 33333 35
Q ss_pred CCcEEEEeCChHHHHHHHHHHHccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCC
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERK 423 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~ 423 (475)
++++||||+++++++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.+
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s 296 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQD 296 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCC
Confidence 7899999999999999998885 6889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 424 EVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 424 ~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
...|+ +||+||.|+.|.|+.++. .+..
T Consensus 297 ~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~ 325 (337)
T 2z0m_A 297 LRTYIHRIGRTGRMGRKGEAITFIL-NEYW 325 (337)
T ss_dssp HHHHHHHHTTBCGGGCCEEEEEEES-SCHH
T ss_pred HHHhhHhcCccccCCCCceEEEEEe-CcHH
Confidence 99888 899999999999999998 4443
No 14
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-51 Score=430.45 Aligned_cols=381 Identities=18% Similarity=0.249 Sum_probs=281.3
Q ss_pred hhhhhh--hhcCCCCCCCcccccccCCccccccccccCCCCCCcchhhhhhhhccc-cccccCCCCCccCCCccCCCCC-
Q 011908 32 HSHLAA--AKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVD-DYVAYDDSSKDEGLDISKLDIS- 107 (475)
Q Consensus 32 ~~~~~~--~~~~~~~~~~~~~~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~- 107 (475)
.+++|. .....|++..+|++.+|||++.++...+++++.|+|++.++....... ..... .+.. +..+
T Consensus 285 ~e~lp~~~~~~~~l~~~~~al~~iH~P~~~~~~~~a~~rl~~eEl~~~ql~l~~~r~~~~~~------~~~~---~~~~~ 355 (780)
T 1gm5_A 285 KETLPERILEKRKLLGVKDAYYGMHFPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREKH------GGIP---KKIEG 355 (780)
T ss_dssp CCCSCHHHHHHHCCCCSHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCC---CCCCT
T ss_pred CCcCCHHHHHHcCCCcHHHHHHhCCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc------cCCC---CCCch
Confidence 344444 445678899999999999999999988999999999999997642111 11111 1111 1223
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHhhhhhcC------CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeC
Q 011908 108 QDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~------~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~P 181 (475)
+.+.+.+...+| +||++|.++++.+.++ ++++++||||||||++|+++++..+.. +.+++|++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaP 425 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECS
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeC
Confidence 344444556677 9999999999999876 689999999999999999999998854 788999999
Q ss_pred CHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHH---HHhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 182 TRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 182 t~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~---~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
|++||.|+++.+.+++. ++++..++|+.....+. ..+.. .++|+||||+.+.+ .+.+.+++++|+||+|
T Consensus 426 tr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQH 500 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCC
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccc
Confidence 99999999999999876 67888889988766543 23334 49999999987743 4568899999999999
Q ss_pred cccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHH
Q 011908 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (475)
++ +...+..+.....++++++|||||++...... ++.+.....+..... .................++.
T Consensus 501 r~-----g~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~----~r~~i~~~~~~~~~~~~l~~ 569 (780)
T 1gm5_A 501 RF-----GVKQREALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPP----GRKEVQTMLVPMDRVNEVYE 569 (780)
T ss_dssp CC----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCS----SCCCCEECCCCSSTHHHHHH
T ss_pred hh-----hHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCC----CCcceEEEEeccchHHHHHH
Confidence 94 44444444445567899999999988654433 333322222211111 11111122223334445556
Q ss_pred HHHHhhcCCCcEEEEeCChHH--------HHHHHHHHHc----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 011908 336 QLITEHAKGGKCIVFTQTKRD--------ADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 336 ~~~~~~~~~~~~lVf~~~~~~--------~~~l~~~l~~----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l 403 (475)
.+.+....+++++|||+++++ ++.+++.|.+ ++.+..+||+|++++|.++++.|++|+.+|||||+++
T Consensus 570 ~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vi 649 (780)
T 1gm5_A 570 FVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVI 649 (780)
T ss_dssp HHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCC
T ss_pred HHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 666667778999999997754 6777777765 4689999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEecCCCCChhHHH---hhccCCCCCCCcEEEeeCh
Q 011908 404 ARGLDVPNVDLVELVVLERKEVQFL---STQISRPGKSRVLSEMLDA 447 (475)
Q Consensus 404 ~~GiDip~~~~vI~~~~~~~~~~~~---~gR~gR~g~~~~~~~~~~~ 447 (475)
++|+|+|++++||++++|+++.+++ +||+||.|+.|.|++++++
T Consensus 650 e~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 650 EVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 9999999999999999998766555 7777777788999999984
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.9e-50 Score=406.23 Aligned_cols=341 Identities=27% Similarity=0.430 Sum_probs=169.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCce
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 175 (475)
..+|+++++++.+++.+.+.++..|+++|.++++.++.+ +++++++|||||||++|+++++..+.. ...+++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~~~~~~ 164 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYPQ 164 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------TSCSCC
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------cCCCCc
Confidence 457889999999999999999999999999999999987 899999999999999999999877633 123568
Q ss_pred EEEEeCCHHhHHHHHHHHHHhC---CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh-CCCCCCCccEEEE
Q 011908 176 CLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVL 251 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~l~~vIi 251 (475)
++|++||++|+.|+++.+.++. +++.+....++...... ...+++|+|+||+++.+.+.+ ..+.+.++++||+
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999988877754 35666666666543222 123479999999999998865 4556789999999
Q ss_pred eccccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEe-ccCcc
Q 011908 252 DEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMYE 329 (475)
Q Consensus 252 DE~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 329 (475)
||+|++.+ .++......+++.++.++|++++|||+++....+...++.++..+.+..... ....+...... .....
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 319 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE--TLDTIKQYYVLCSSRDE 319 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc--CcCCceEEEEEeCCHHH
Confidence 99999986 5788888888888889999999999999999999999998888776643321 12222222222 22345
Q ss_pred hhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCC
Q 011908 330 KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLD 408 (475)
Q Consensus 330 k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiD 408 (475)
+...+..++... ..++++|||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 320 ~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlD 398 (479)
T 3fmp_B 320 KFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 398 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCc
Confidence 566666666554 457999999999999999999954 688999999999999999999999999999999999999999
Q ss_pred CCCCCEEEecCCCCCh------hHHH--hhccCCCCCCCcEEEeeChhhh
Q 011908 409 VPNVDLVELVVLERKE------VQFL--STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 409 ip~~~~vI~~~~~~~~------~~~~--~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
+|++++||++++|.+. ..|+ +||+||.|+.|.|++++++.+.
T Consensus 399 ip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~ 448 (479)
T 3fmp_B 399 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 448 (479)
T ss_dssp --------------------------------------------------
T ss_pred cccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcch
Confidence 9999999999999643 4565 7888888888999999987653
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-47 Score=393.32 Aligned_cols=334 Identities=16% Similarity=0.234 Sum_probs=267.1
Q ss_pred ccCCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEE
Q 011908 101 ISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 101 ~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil 179 (475)
+.++++++.+.+.|++ .|+.+|+++|.++++.+++++++++.+|||+|||++|++|++.. +.+++|+
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~lVi 90 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTLVI 90 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEEEE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEEEE
Confidence 3467889999999998 59999999999999999999999999999999999999998742 4579999
Q ss_pred eCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH------hhCCCCEEEEccHHHH------HHHHhCCCCCCCcc
Q 011908 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA------LDYGVDAVVGTPGRVI------DLIKRNALNLSEVQ 247 (475)
Q Consensus 180 ~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~Ilv~T~~~l~------~~l~~~~~~~~~l~ 247 (475)
+|+++|+.|+.+.+.++ ++.+..+.|+......... ....++|+|+||++|. +.+. ....+.+++
T Consensus 91 sP~~~L~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~~~~~i~ 167 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL--GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KAYEARRFT 167 (591)
T ss_dssp CSCHHHHHHHHHHHHHH--TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HHHHTTCEE
T ss_pred eCHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hhhhccCCc
Confidence 99999999999999998 6778888888775544322 1345899999999874 2222 233467899
Q ss_pred EEEEeccccccccC--cHHHHHH--HHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEE
Q 011908 248 FVVLDEADQMLSVG--FAEDVEV--ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323 (475)
Q Consensus 248 ~vIiDE~H~~~~~~--~~~~~~~--il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (475)
++||||+|++.+|+ |...+.. .+....++.++++||||+++.+......++..+....+....... .+ .+.+
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~---nl-~~~v 243 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP---NL-YYEV 243 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT---TE-EEEE
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc---cc-EEEE
Confidence 99999999999887 6555443 344444678999999999998888777777655444333222211 11 2222
Q ss_pred eccCcch---hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011908 324 ATSMYEK---PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (475)
Q Consensus 324 ~~~~~~k---~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 399 (475)
......+ ...+..+++....++++||||+++++++.++..|. .++.+..+||+|++++|.++++.|.+|+.+||||
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVA 323 (591)
T 2v1x_A 244 RQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVA 323 (591)
T ss_dssp EECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEE
T ss_pred EeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 2222222 33444444443467899999999999999999995 4689999999999999999999999999999999
Q ss_pred ecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhc
Q 011908 400 TDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQ 453 (475)
Q Consensus 400 T~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~ 453 (475)
|+++++|||+|++++||++++|.+...|+ +||+||.|+.|.|++++++.|....
T Consensus 324 T~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~ 379 (591)
T 2v1x_A 324 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI 379 (591)
T ss_dssp CTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHH
T ss_pred echhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHH
Confidence 99999999999999999999999999999 8999999999999999999887544
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.2e-46 Score=382.23 Aligned_cols=331 Identities=18% Similarity=0.279 Sum_probs=263.6
Q ss_pred CccCCCCCHHHHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 100 DISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
+|+++++++.+.+.|++ .|+.+|+++|.++++.+++++++++.+|||+|||++|++|++.. +..++|
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~lv 70 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVV 70 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEE
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEEE
Confidence 57789999999999998 79999999999999999999999999999999999999998742 356999
Q ss_pred EeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHH----HhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecc
Q 011908 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (475)
Q Consensus 179 l~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~ 254 (475)
++|+++|+.|+.+.+.++ ++....+.++........ .....++|+|+||+++........+...+++++||||+
T Consensus 71 i~P~~aL~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN--GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEA 148 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSG
T ss_pred ECChHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCc
Confidence 999999999999999987 567777777766544322 22345899999999985322222233578999999999
Q ss_pred ccccccC--cHHHHH---HHHHhCCCCCcEEEEeeecChhHHHHHHHhc--CCCcEEEeecCCcccccCCeEEEEEeccC
Q 011908 255 DQMLSVG--FAEDVE---VILERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSM 327 (475)
Q Consensus 255 H~~~~~~--~~~~~~---~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (475)
|++.+|+ |...+. .+...+ ++.+++++|||+++.........+ .++... ..+ ... ..+ .+.....
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~-~~r---~~l--~~~v~~~ 220 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS-FDR---PNI--RYMLMEK 220 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC-CCC---TTE--EEEEEEC
T ss_pred cccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC-CCC---Cce--EEEEEeC
Confidence 9999876 544443 344555 568899999999987765444433 333332 221 111 111 2223333
Q ss_pred cchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q 011908 328 YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARG 406 (475)
Q Consensus 328 ~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~G 406 (475)
..+...+..+++.. .++++||||+++++++.+++.|.. ++.+..+||+|+.++|.++++.|.+|+.+|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~G 299 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299 (523)
T ss_dssp SSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTT
T ss_pred CCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCC
Confidence 45566666666654 567999999999999999999964 6899999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhc
Q 011908 407 LDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQ 453 (475)
Q Consensus 407 iDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~ 453 (475)
+|+|++++||++++|.+...|+ +||+||.|+.|.|++++++.|....
T Consensus 300 iD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~ 348 (523)
T 1oyw_A 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWL 348 (523)
T ss_dssp TCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHH
T ss_pred CCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHH
Confidence 9999999999999999999998 8999999999999999999887543
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-47 Score=389.36 Aligned_cols=337 Identities=27% Similarity=0.420 Sum_probs=235.4
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~l 177 (475)
.+...++++.+.+.+.+.++..|+++|.++++.+.++ +++++++|||||||++|+++++..+.. ...+++++
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~------~~~~~~vL 193 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA------SVPKPQAI 193 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT------TCCSCCEE
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh------CCCCceEE
Confidence 3556678889999999999999999999999999998 899999999999999999999988743 13356899
Q ss_pred EEeCCHHhHHHHHHHHHHhCCCCc--eEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 178 VLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
|++|+++|+.|+++.+++++.... .....++... .....+++|+|+||+++.+.+.+....+.++++||+||+|
T Consensus 194 vl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH 269 (508)
T 3fho_A 194 CLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEAD 269 (508)
T ss_dssp EECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHH
T ss_pred EEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc----ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechh
Confidence 999999999999999999876443 3333333221 1122358999999999999998888888999999999999
Q ss_pred cccc-cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEE-EEEeccCcchhhH
Q 011908 256 QMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL-YSIATSMYEKPSI 333 (475)
Q Consensus 256 ~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~ 333 (475)
++.+ .++...+..++..++++.|+++||||+++....+...+..++..+........ ...+.. .........+...
T Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~k~~~ 347 (508)
T 3fho_A 270 NMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELS--VEGIKQLYMDCQSEEHKYNV 347 (508)
T ss_dssp HHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC------CCCCEEEEC--CHHHHHH
T ss_pred hhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCC--cccceEEEEECCchHHHHHH
Confidence 9887 56889999999999999999999999999999999998888877654332211 112222 2222234455666
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV 412 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~ 412 (475)
+..+++.. .++++||||+++++++.++..|.+ +..+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 348 l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v 426 (508)
T 3fho_A 348 LVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQV 426 (508)
T ss_dssp HHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTC
T ss_pred HHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCC
Confidence 66666554 567999999999999999999954 6889999999999999999999999999999999999999999999
Q ss_pred CEEEecCCC------CChhHHH--hhccCCCCCCCcEEEeeChhh
Q 011908 413 DLVELVVLE------RKEVQFL--STQISRPGKSRVLSEMLDADL 449 (475)
Q Consensus 413 ~~vI~~~~~------~~~~~~~--~gR~gR~g~~~~~~~~~~~~~ 449 (475)
++||+++.| .+...|+ +||+||.|+.|.|++++.+.+
T Consensus 427 ~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 427 NLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp CEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred CEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 999999999 6677777 777788788899999998643
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=7.2e-45 Score=362.96 Aligned_cols=311 Identities=20% Similarity=0.245 Sum_probs=243.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHH
Q 011908 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
+.+.+.+++...++|+++|.++++.+++++++++++|||||||++|+++++... ..+++++|++||++|+.
T Consensus 8 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---------~~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 8 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---------TTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---------cCCCEEEEEECCHHHHH
Confidence 345566666444589999999999999999999999999999999988888766 34788999999999999
Q ss_pred HHHHHHHHhCC-CCceEEEEcCCCh---hHHHHHhhCC-CCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc---
Q 011908 188 QVEKEFHESAP-SLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS--- 259 (475)
Q Consensus 188 Q~~~~l~~~~~-~~~~~~~~g~~~~---~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~--- 259 (475)
|+++.+++++. ++++..++|+... ......+..+ ++|+|+||+++.+.+.. +.+.+++++|+||+|++..
T Consensus 79 q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 79 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 99999999876 7788888999887 3444555555 89999999999887764 5567899999999997654
Q ss_pred --------cCcHHH-HHHHHHhCC-----------CCCcEEEEeee-cChhHH-HHHHHhcCCCcEEEeecCCcccccCC
Q 011908 260 --------VGFAED-VEVILERLP-----------QNRQSMMFSAT-MPPWIR-SLTNKYLKNPLTVDLVGDSDQKLADG 317 (475)
Q Consensus 260 --------~~~~~~-~~~il~~~~-----------~~~~~l~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (475)
.+|... +..++..++ ...|++++||| +++.+. .+...+.. +.. .........
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~ 230 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTV--GRLVSVARN 230 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCS--SCCCCCCCS
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCc--Ccccccccc
Confidence 456666 777777765 78899999999 454433 22333322 110 111122223
Q ss_pred eEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCee-eecCCCCHHHHHHHHHHHhcCCCc
Q 011908 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCE-PLHGDISQSQRERTLSAFRDGRFN 395 (475)
Q Consensus 318 ~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~-~lh~~~~~~~r~~~~~~F~~g~~~ 395 (475)
+....... ++...+..+++.. ++++||||++++.++.++..|.. ++.+. .+||+ +|. ++.|++|+.+
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred chheeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 33333322 4566677777774 58999999999999999999964 68888 89985 344 9999999999
Q ss_pred EEEE----ecccccCCCCCC-CCEEEecCCC--CChhHHH--hhccCCCC----CCCcEEEeeC
Q 011908 396 ILIA----TDVAARGLDVPN-VDLVELVVLE--RKEVQFL--STQISRPG----KSRVLSEMLD 446 (475)
Q Consensus 396 vLva----T~~l~~GiDip~-~~~vI~~~~~--~~~~~~~--~gR~gR~g----~~~~~~~~~~ 446 (475)
|||| |+++++|+|+|+ +++||+++.| .+...|+ +||+||.| +.|.+++++.
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 9999 999999999999 9999999999 8999998 88888877 4788999883
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.6e-44 Score=381.37 Aligned_cols=331 Identities=18% Similarity=0.257 Sum_probs=257.9
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
+|+++++++.+.+.+++.|+.+|+++|.++++. +..++++++++|||||||++|.++++..+... +.+++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~l~ 73 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKAVY 73 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEEEE
Confidence 478899999999999999999999999999998 88899999999999999999999999887631 678999
Q ss_pred EeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc
Q 011908 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (475)
Q Consensus 179 l~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~ 257 (475)
++|+++|+.|++++++++.. ++++..++|+.....+ ....++|+|+||+++...+.+....++++++||+||+|.+
T Consensus 74 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred EcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 99999999999999975543 6788888887664432 1235899999999999988876666889999999999999
Q ss_pred cccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEE----EEecc-----Cc
Q 011908 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY----SIATS-----MY 328 (475)
Q Consensus 258 ~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~ 328 (475)
.+++++..+..++..++++.|+++||||+++ ...+. .++... .+.... .......... ..... ..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~-~~l~~~-~~~~~~---rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELA-EWLNAE-LIVSDW---RPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHH-HHTTEE-EEECCC---CSSEEEEEEEETTEEEETTSCEEECS
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHH-HHhCCc-ccCCCC---CCCcceEEEEeCCeeeccccchhhhh
Confidence 9888999999999888778999999999976 23333 344321 111100 0000000000 00011 12
Q ss_pred chhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHcc----------------------------------CCeeeec
Q 011908 329 EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS----------------------------------YNCEPLH 374 (475)
Q Consensus 329 ~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----------------------------------~~~~~lh 374 (475)
.+...+.. .+.+++++||||+++++++.++..|.+. ..+..+|
T Consensus 225 ~~~~~~~~---~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYD---AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHH---HHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHH---HHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 22333333 3346789999999999999999888531 2488999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe----cC----CCCChhHHH--hhccCCCC--CCCcEE
Q 011908 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL----VV----LERKEVQFL--STQISRPG--KSRVLS 442 (475)
Q Consensus 375 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~----~~----~~~~~~~~~--~gR~gR~g--~~~~~~ 442 (475)
|+|++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.+...++ +||+||.| ..|.|+
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 66 466766666 66666666 357899
Q ss_pred EeeChhhh
Q 011908 443 EMLDADLL 450 (475)
Q Consensus 443 ~~~~~~~~ 450 (475)
.++++++.
T Consensus 382 ~l~~~~~~ 389 (720)
T 2zj8_A 382 IVSTSDDP 389 (720)
T ss_dssp EECSSSCH
T ss_pred EEecCccH
Confidence 99987763
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.5e-44 Score=383.31 Aligned_cols=336 Identities=21% Similarity=0.266 Sum_probs=254.6
Q ss_pred CccCCC--CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEE
Q 011908 100 DISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 100 ~~~~~~--l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~l 177 (475)
+|++++ +++.+.+.+++.|+.+|+++|.++++.+..++++++++|||||||+++.++++..+.. +.+++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l 72 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSL 72 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEE
Confidence 466677 8999999999999999999999999999999999999999999999999999988743 56899
Q ss_pred EEeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccc
Q 011908 178 VLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~ 256 (475)
|++|+++|+.|+++.++.+.. ++++..++|+...... ....++|+|+||+++...+.+....++++++||+||+|+
T Consensus 73 ~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 73 YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 999999999999999965543 6778888887654332 123589999999999998888666688999999999999
Q ss_pred ccccCcHHHHHHHHHhC---CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCccc---ccCCeEEEEEeccCc--
Q 011908 257 MLSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK---LADGISLYSIATSMY-- 328 (475)
Q Consensus 257 ~~~~~~~~~~~~il~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-- 328 (475)
+.+++++..+..++..+ +++.|+++||||+++ ...+.. ++..+ .+......... ........ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r~~~l~~~~~~~~~~~-~~~~~~~~ 225 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDAD-YYVSDWRPVPLVEGVLCEGTLE-LFDGAFST 225 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCE-EEECCCCSSCEEEEEECSSEEE-EEETTEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCC-cccCCCCCccceEEEeeCCeee-ccCcchhh
Confidence 99888888888776655 578999999999985 344443 44322 12111110000 00000000 111000
Q ss_pred -chhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHcc-------------------------------CCeeeecCC
Q 011908 329 -EKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-------------------------------YNCEPLHGD 376 (475)
Q Consensus 329 -~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-------------------------------~~~~~lh~~ 376 (475)
.....+..+.+...+++++||||+++++++.++..|.+. ..+..+||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 226 SRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp EEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 111133333344456889999999999999999888531 358899999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe----cC---CCCChhHHH--hhccCCCC--CCCcEEEee
Q 011908 377 ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL----VV---LERKEVQFL--STQISRPG--KSRVLSEML 445 (475)
Q Consensus 377 ~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~----~~---~~~~~~~~~--~gR~gR~g--~~~~~~~~~ 445 (475)
|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..++. .||+||.| ..|.|+.++
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 385 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998 66 567777776 67777766 367899999
Q ss_pred Chhhhh
Q 011908 446 DADLLS 451 (475)
Q Consensus 446 ~~~~~~ 451 (475)
++++..
T Consensus 386 ~~~~~~ 391 (702)
T 2p6r_A 386 GKRDRE 391 (702)
T ss_dssp CGGGHH
T ss_pred cCccHH
Confidence 987743
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-43 Score=376.52 Aligned_cols=336 Identities=21% Similarity=0.294 Sum_probs=255.2
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh-hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceE
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~-i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 176 (475)
..+|+++++++.+.+.+.+.|+.+|+++|.++++. +..++++++++|||||||+++.++++..+.. .+.++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~i 78 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGKA 78 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCeE
Confidence 45688999999999999999999999999999999 7788999999999999999999999988753 26789
Q ss_pred EEEeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 177 LVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 177 lil~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
+|++|+++|+.|+++.++.+.. ++.+..++|+...... .. ..++|+|+||+++...+.+....++++++||+||+|
T Consensus 79 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 9999999999999999965443 6777777887654432 12 258999999999999888876668899999999999
Q ss_pred cccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCe--------EEEEEeccC
Q 011908 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI--------SLYSIATSM 327 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 327 (475)
++.+..++..++.++..++ +.++++||||+++ ...+.. ++..+. +...... ......+ .......+.
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~-~~l~~~~~~~~~~~~~~~~~~~~~ 230 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEP-VATNWRP-VPLIEGVIYPERKKKEYNVIFKDN 230 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEE-EECCCCS-SCEEEEEEEECSSTTEEEEEETTS
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCc-cCCCCCC-CCceEEEEecCCcccceeeecCcc
Confidence 9988789999998888775 7899999999975 234443 333221 1111000 0000000 000000110
Q ss_pred -----cchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHcc-----------------------------------
Q 011908 328 -----YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS----------------------------------- 367 (475)
Q Consensus 328 -----~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----------------------------------- 367 (475)
......+..+.+.+..++++||||+++++++.++..|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 231 TTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp CEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 0012233344444557889999999999999999998642
Q ss_pred --CCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe----cC-------CCCChhHHH--hhcc
Q 011908 368 --YNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL----VV-------LERKEVQFL--STQI 432 (475)
Q Consensus 368 --~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~----~~-------~~~~~~~~~--~gR~ 432 (475)
..+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..++. .||+
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24889999999999999999999999999999999999999999999999 88 677777777 6666
Q ss_pred CCCCC--CCcEEEeeChhh
Q 011908 433 SRPGK--SRVLSEMLDADL 449 (475)
Q Consensus 433 gR~g~--~~~~~~~~~~~~ 449 (475)
||.|. .|.|+.++++.+
T Consensus 391 GR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CCTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCCceEEEEeCCch
Confidence 66663 578999998765
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-43 Score=388.11 Aligned_cols=327 Identities=21% Similarity=0.248 Sum_probs=253.8
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil 179 (475)
.|+.+++++.+...+...++++|+++|.++++.+..+++++++||||||||++|.++++..+.. +.+++|+
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvlvl 233 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYT 233 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEE
Confidence 4555666666666666777889999999999999999999999999999999999999988743 7789999
Q ss_pred eCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011908 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 180 ~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~ 259 (475)
+||++|+.|+++.+.+.+. .+.+++|+... ..+++|+|+||++|.+.+.+....+.++++||+||+|++.+
T Consensus 234 ~PtraLa~Q~~~~l~~~~~--~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG--DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS--SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred cCcHHHHHHHHHHHHHHhC--CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 9999999999999999886 56667777663 24589999999999999988777788999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCCcEEEEeeecChh--HHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccC---------c
Q 011908 260 VGFAEDVEVILERLPQNRQSMMFSATMPPW--IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM---------Y 328 (475)
Q Consensus 260 ~~~~~~~~~il~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 328 (475)
++++..+..++..++++.|+++||||+++. +..+.......+..+......... ...+...... .
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p----l~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP----LQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC----EEEEEEETTSSCCEEEEETT
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc----ceEEEeecCCcceeeeeccc
Confidence 999999999999999999999999998764 334555555555444332211111 1111110000 0
Q ss_pred c----------------------------------------h---hhHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHH
Q 011908 329 E----------------------------------------K---PSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHA 363 (475)
Q Consensus 329 ~----------------------------------------k---~~~l~~~~~~~--~~~~~~lVf~~~~~~~~~l~~~ 363 (475)
. + ...+..+++.+ ...+++||||++++.++.++..
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHH
Confidence 0 0 22222333322 2356999999999999999988
Q ss_pred HHc-cC---------------------------------------CeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 011908 364 MAK-SY---------------------------------------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 364 l~~-~~---------------------------------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l 403 (475)
|.. ++ .+..+||+|++.+|..+++.|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 743 11 17889999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEecCCCCC--------hhHHH--hhccCCCC--CCCcEEEeeChh
Q 011908 404 ARGLDVPNVDLVELVVLERK--------EVQFL--STQISRPG--KSRVLSEMLDAD 448 (475)
Q Consensus 404 ~~GiDip~~~~vI~~~~~~~--------~~~~~--~gR~gR~g--~~~~~~~~~~~~ 448 (475)
++|+|+|++++||+++.+.+ ...|+ +||+||.| ..|.|++++++.
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999998776544 34466 88888888 568888888765
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3e-43 Score=364.85 Aligned_cols=328 Identities=18% Similarity=0.208 Sum_probs=198.3
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
+..+|+++|.++++.++.++++++++|||||||++|+++++..+.... ...+.+++|++||++|+.|+++.+.+++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc----ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 446899999999999999999999999999999999999998875521 1226789999999999999999999987
Q ss_pred C--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCC-CCCCccEEEEeccccccccCcHHHHH-HHHHh-
Q 011908 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDVE-VILER- 272 (475)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~l~~vIiDE~H~~~~~~~~~~~~-~il~~- 272 (475)
+ ++.+..++|+.........+..+++|+|+||+++.+.+....+ .+.+++++|+||+|++.+++....+. ..+..
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 6 7788888888876665555556689999999999999988776 78899999999999998876433332 22222
Q ss_pred C---CCCCcEEEEeeecChh-----------HHHHHH------------------HhcCCCcEEEeecCC--cccccC--
Q 011908 273 L---PQNRQSMMFSATMPPW-----------IRSLTN------------------KYLKNPLTVDLVGDS--DQKLAD-- 316 (475)
Q Consensus 273 ~---~~~~~~l~~SAT~~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~-- 316 (475)
+ ++.+++++|||||+.. +..+.. .+...+......... ......
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 239 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHH
Confidence 1 3568999999999531 111111 111122211110000 000000
Q ss_pred ---------------CeE-EEEE---------------------------------------------------------
Q 011908 317 ---------------GIS-LYSI--------------------------------------------------------- 323 (475)
Q Consensus 317 ---------------~~~-~~~~--------------------------------------------------------- 323 (475)
... ....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (556)
T 4a2p_A 240 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 319 (556)
T ss_dssp HHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 0000
Q ss_pred -----------------------------------------------eccCcchhhHHHHHHHhh---cCCCcEEEEeCC
Q 011908 324 -----------------------------------------------ATSMYEKPSIIGQLITEH---AKGGKCIVFTQT 353 (475)
Q Consensus 324 -----------------------------------------------~~~~~~k~~~l~~~~~~~---~~~~~~lVf~~~ 353 (475)
......|...+..++.+. ..+.++||||++
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~ 399 (556)
T 4a2p_A 320 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 399 (556)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 000123444555555443 467899999999
Q ss_pred hHHHHHHHHHHHc-------------cCCeeeecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCCCCCCEEEecC
Q 011908 354 KRDADRLAHAMAK-------------SYNCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLVELVV 419 (475)
Q Consensus 354 ~~~~~~l~~~l~~-------------~~~~~~lh~~~~~~~r~~~~~~F~~-g~~~vLvaT~~l~~GiDip~~~~vI~~~ 419 (475)
++.++.+++.|.+ +.....+||+|++++|.+++++|++ |+.+|||||+++++|+|+|++++||+||
T Consensus 400 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d 479 (556)
T 4a2p_A 400 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 479 (556)
T ss_dssp HHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEET
T ss_pred HHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeC
Confidence 9999999999954 2234456788999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHhhccCC--CCCCCcEEEeeChhhhh
Q 011908 420 LERKEVQFLSTQISR--PGKSRVLSEMLDADLLS 451 (475)
Q Consensus 420 ~~~~~~~~~~gR~gR--~g~~~~~~~~~~~~~~~ 451 (475)
+|+++..|+ ||+|| . +.|.++.++++++..
T Consensus 480 ~p~s~~~~~-Qr~GRgR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 480 YSGNVTKMI-QVRGRGRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CCSCHHHHH-HC---------CCEEEEESCHHHH
T ss_pred CCCCHHHHH-HhcCCCCC-CCceEEEEEeCcchH
Confidence 999999998 45555 4 568999999987664
No 25
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.2e-42 Score=376.30 Aligned_cols=321 Identities=15% Similarity=0.214 Sum_probs=251.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhc----CC--cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceE
Q 011908 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ----GR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 103 ~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~----~~--~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 176 (475)
.++.++...+.+.+...+++|++|.++++.+.+ ++ +++++++||+|||++|+.+++..+. .+.++
T Consensus 585 ~~~~~~~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---------~g~~v 655 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQV 655 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---------TTCEE
T ss_pred CCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---------hCCeE
Confidence 345777888888776556799999999999886 44 8999999999999999988887763 37799
Q ss_pred EEEeCCHHhHHHHHHHHHHhCCC--CceEEEEcCCChhHHH---HHhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 177 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 177 lil~Pt~~La~Q~~~~l~~~~~~--~~~~~~~g~~~~~~~~---~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
+|++||++|+.||++.+.+.+.+ +++..+.+........ ..+.. .++|+||||+.+ ...+.+++++++|
T Consensus 656 lvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 656 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLI 730 (1151)
T ss_dssp EEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEE
T ss_pred EEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccccccceEE
Confidence 99999999999999999998864 5566666665544432 23334 489999999755 3456789999999
Q ss_pred EeccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcch
Q 011908 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (475)
Q Consensus 251 iDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (475)
+||+|+ |+......+..++.+.++++|||||++.........+.++..+.. .... ...+..+.. ...+
T Consensus 731 iDEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~--~~~~--r~~i~~~~~---~~~~ 798 (1151)
T 2eyq_A 731 VDEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT--PPAR--RLAVKTFVR---EYDS 798 (1151)
T ss_dssp EESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC--CCCB--CBCEEEEEE---ECCH
T ss_pred EechHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec--CCCC--ccccEEEEe---cCCH
Confidence 999999 566667777777788999999999998777666555544333221 1111 111222222 2234
Q ss_pred hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc---cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCC
Q 011908 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGL 407 (475)
Q Consensus 331 ~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~Gi 407 (475)
......+++....+++++|||+++++++.+++.|.+ +..+..+||+|++.+|+++++.|++|+.+|||||+++++|+
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 556667777777899999999999999999999965 56899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEecCCCCChhHHH---hhccCCCCCCCcEEEeeChhh
Q 011908 408 DVPNVDLVELVVLERKEVQFL---STQISRPGKSRVLSEMLDADL 449 (475)
Q Consensus 408 Dip~~~~vI~~~~~~~~~~~~---~gR~gR~g~~~~~~~~~~~~~ 449 (475)
|+|++++||+++++..+..++ +||+||.|+.|.|++++.+++
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999999999999976554444 677777777889999988754
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.9e-43 Score=371.94 Aligned_cols=334 Identities=18% Similarity=0.178 Sum_probs=217.2
Q ss_pred HHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHH
Q 011908 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 112 ~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 191 (475)
..+...|+.+|+++|.++++.++.++++++++|||+|||++|+++++..+.... .+.+.+++|++||++|+.|+++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~lvl~Pt~~L~~Q~~~ 79 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPVYEQNKS 79 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----TTCCCCEEEECSSHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc----cCCCCeEEEEECCHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999998875521 1224679999999999999999
Q ss_pred HHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCC-CCCCccEEEEeccccccccCc-HHHHH
Q 011908 192 EFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGF-AEDVE 267 (475)
Q Consensus 192 ~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~l~~vIiDE~H~~~~~~~-~~~~~ 267 (475)
.++++++ ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.+++++|+||+|++.+... ...+.
T Consensus 80 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 80 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 9999986 6788888888866555555556789999999999999988766 688899999999999876542 22222
Q ss_pred HHHHh-----CCCCCcEEEEeeecCh-------h-HHHHHH---------------------HhcCCCcEEEeecCCccc
Q 011908 268 VILER-----LPQNRQSMMFSATMPP-------W-IRSLTN---------------------KYLKNPLTVDLVGDSDQK 313 (475)
Q Consensus 268 ~il~~-----~~~~~~~l~~SAT~~~-------~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 313 (475)
..+.. .++.+++++|||||.. . ...+.. .+...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22322 2467899999999961 1 111111 111112111000000000
Q ss_pred c--------------------cC---------------------------------------------------------
Q 011908 314 L--------------------AD--------------------------------------------------------- 316 (475)
Q Consensus 314 ~--------------------~~--------------------------------------------------------- 316 (475)
. ..
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 0 00
Q ss_pred --------------------------------CeEEEEE----------------eccCcchhhHHHHHHHhh---cCCC
Q 011908 317 --------------------------------GISLYSI----------------ATSMYEKPSIIGQLITEH---AKGG 345 (475)
Q Consensus 317 --------------------------------~~~~~~~----------------~~~~~~k~~~l~~~~~~~---~~~~ 345 (475)
.+..... ......|...+..++... ..++
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 0000000 001334566667777654 3567
Q ss_pred cEEEEeCChHHHHHHHHHHHcc-----CCeeee--------cCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCCCC
Q 011908 346 KCIVFTQTKRDADRLAHAMAKS-----YNCEPL--------HGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 346 ~~lVf~~~~~~~~~l~~~l~~~-----~~~~~l--------h~~~~~~~r~~~~~~F~~-g~~~vLvaT~~l~~GiDip~ 411 (475)
++||||++++.++.+++.|... +++..+ ||+|++++|.+++++|++ |+.+|||||+++++|+|+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 9999999999999999999653 778888 559999999999999998 99999999999999999999
Q ss_pred CCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 412 VDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 412 ~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
+++||+||+|.+...|+ +|| ||. ++|.|+.+++.++..
T Consensus 480 v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 480 CNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVI 519 (696)
T ss_dssp CSEEEEESCC--CCCC-----------CCCEEEEEESCHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHH
Confidence 99999999999999988 555 554 568999999987763
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.4e-42 Score=356.77 Aligned_cols=326 Identities=20% Similarity=0.199 Sum_probs=220.2
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC-
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~- 198 (475)
++|+++|.++++.++.++++++++|||||||++|+++++..+.... ...+.+++|++||++|+.|+++.+.++++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----CGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----cCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999999998886521 12367899999999999999999999875
Q ss_pred -CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCC-CCCCccEEEEeccccccccCc-HHHHHHHHHhC--
Q 011908 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGF-AEDVEVILERL-- 273 (475)
Q Consensus 199 -~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~l~~vIiDE~H~~~~~~~-~~~~~~il~~~-- 273 (475)
++.+..++|+.........+..+++|+|+||+++...+....+ .+.+++++|+||+|++.+.+. ...+...+...
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 6788888898876666555666689999999999999988766 688899999999999987643 22222333322
Q ss_pred ---CCCCcEEEEeeecChhH--------HHHH--HHhcCCCcEEEeecCCcccc----cCCeEEEE-Ee-----------
Q 011908 274 ---PQNRQSMMFSATMPPWI--------RSLT--NKYLKNPLTVDLVGDSDQKL----ADGISLYS-IA----------- 324 (475)
Q Consensus 274 ---~~~~~~l~~SAT~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~----------- 324 (475)
.+.+++++|||||+... ..+. ...+ +...+.......... ........ ..
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAAL-DASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCII 237 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHT-TCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhc-CCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHH
Confidence 25579999999995421 1110 1111 111111111000000 00000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 011908 325 -------------------------------------------------------------------------------- 324 (475)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (475)
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred -------------------------------------------------ccCcchhhHHHHHHHhh---cCCCcEEEEeC
Q 011908 325 -------------------------------------------------TSMYEKPSIIGQLITEH---AKGGKCIVFTQ 352 (475)
Q Consensus 325 -------------------------------------------------~~~~~k~~~l~~~~~~~---~~~~~~lVf~~ 352 (475)
.....|...+..++... ..++++||||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 00123444555555443 34689999999
Q ss_pred ChHHHHHHHHHHHcc-----CCe--------eeecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCCCCCCEEEec
Q 011908 353 TKRDADRLAHAMAKS-----YNC--------EPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLVELV 418 (475)
Q Consensus 353 ~~~~~~~l~~~l~~~-----~~~--------~~lh~~~~~~~r~~~~~~F~~-g~~~vLvaT~~l~~GiDip~~~~vI~~ 418 (475)
+++.++.++..|... +.+ ..+||+|++++|.+++++|++ |+++|||||+++++|+|+|++++||+|
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~ 477 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILY 477 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEE
T ss_pred cHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEe
Confidence 999999999999642 333 445669999999999999999 999999999999999999999999999
Q ss_pred CCCCChhHHHhhccCC--CCCCCcEEEeeChhhhhh
Q 011908 419 VLERKEVQFLSTQISR--PGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 419 ~~~~~~~~~~~gR~gR--~g~~~~~~~~~~~~~~~~ 452 (475)
|+|+++..|+ ||+|| . +.|.++.++++++...
T Consensus 478 d~p~s~~~~~-Qr~GRgR~-~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 478 EYVGNVIKMI-QTRGRGRA-RDSKCFLLTSSADVIE 511 (555)
T ss_dssp SCCSSCCCEE-CSSCCCTT-TSCEEEEEESCHHHHH
T ss_pred CCCCCHHHHH-HhcCcCcC-CCceEEEEEcCCCHHH
Confidence 9999999998 55555 4 5789999999887653
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-41 Score=364.74 Aligned_cols=307 Identities=21% Similarity=0.245 Sum_probs=241.1
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~ 199 (475)
++|+++|.++++.+.+++++++++|||||||++|.++++..+.. +.+++|++||++|+.|+++.+.+.+.
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 47999999999999999999999999999999999999887733 67899999999999999999999876
Q ss_pred CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcE
Q 011908 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (475)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~ 279 (475)
.+.+++|+.... ..++|+|+||++|.+.+.+....+.++++||+||+|++.+++++..+..++..++.++++
T Consensus 155 -~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 667777776543 247999999999999888877778999999999999999999999999999999999999
Q ss_pred EEEeeecChhHH--HHHHHhcCCCcEEEeecCCcccccCCeEEEEEec---------cCcc-------------------
Q 011908 280 MMFSATMPPWIR--SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT---------SMYE------------------- 329 (475)
Q Consensus 280 l~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~------------------- 329 (475)
++||||+++... .+.......+..+....... ..+..+.... +...
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS----SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc----ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 999999876422 23332333343332221111 0111111110 0000
Q ss_pred ----------------h--------hhHHHHHHHhhc--CCCcEEEEeCChHHHHHHHHHHHc-cC--------------
Q 011908 330 ----------------K--------PSIIGQLITEHA--KGGKCIVFTQTKRDADRLAHAMAK-SY-------------- 368 (475)
Q Consensus 330 ----------------k--------~~~l~~~~~~~~--~~~~~lVf~~~~~~~~~l~~~l~~-~~-------------- 368 (475)
+ ...+..+++.+. ...++||||+++..++.++..|.. ++
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 0 222333333221 345899999999999999988854 11
Q ss_pred -------------------------CeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe----cC
Q 011908 369 -------------------------NCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL----VV 419 (475)
Q Consensus 369 -------------------------~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~----~~ 419 (475)
.+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ||
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 2788999999999999999999999999999999999999999999999 98
Q ss_pred C----CCChhHHH--hhccCCCCC--CCcEEEeeChh
Q 011908 420 L----ERKEVQFL--STQISRPGK--SRVLSEMLDAD 448 (475)
Q Consensus 420 ~----~~~~~~~~--~gR~gR~g~--~~~~~~~~~~~ 448 (475)
. |.++..|+ +||+||.|. .|.|++++++.
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 8 77888888 888888886 48999999865
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-41 Score=365.76 Aligned_cols=330 Identities=18% Similarity=0.197 Sum_probs=204.7
Q ss_pred HCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
..++.+|+++|.++++.++.++++++++|||||||++|+++++..+.... ...+.+++|++||++|+.|+++.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999998886521 12367899999999999999999999
Q ss_pred hCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCC-CCCCccEEEEeccccccccCcHHHH-HHHHH
Q 011908 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDV-EVILE 271 (475)
Q Consensus 196 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~l~~vIiDE~H~~~~~~~~~~~-~~il~ 271 (475)
+++ ++.+..++|+.........+..+++|+|+||+++.+.+....+ .+.++++||+||+|++.+.+....+ ...+.
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 886 7888888998876666666667799999999999999987766 6888999999999998876533322 23332
Q ss_pred h----CCCCCcEEEEeeecCh-----------hHHHHH------------------HHhcCCCcEEEeecCC--ccccc-
Q 011908 272 R----LPQNRQSMMFSATMPP-----------WIRSLT------------------NKYLKNPLTVDLVGDS--DQKLA- 315 (475)
Q Consensus 272 ~----~~~~~~~l~~SAT~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~- 315 (475)
. ..+.+++++|||||+. .+..+. ..+...+......... .....
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 2 1466899999999852 111111 1111222211110000 00000
Q ss_pred --------------CC--------eEEEEE--------------------------------------------------
Q 011908 316 --------------DG--------ISLYSI-------------------------------------------------- 323 (475)
Q Consensus 316 --------------~~--------~~~~~~-------------------------------------------------- 323 (475)
.. ......
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 000000
Q ss_pred -------------------------------------------------eccCcchhhHHHHHHHhh---cCCCcEEEEe
Q 011908 324 -------------------------------------------------ATSMYEKPSIIGQLITEH---AKGGKCIVFT 351 (475)
Q Consensus 324 -------------------------------------------------~~~~~~k~~~l~~~~~~~---~~~~~~lVf~ 351 (475)
......|...+..++.+. ..+.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 000122444455555432 4568999999
Q ss_pred CChHHHHHHHHHHHc-------------cCCeeeecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCCCCCCEEEe
Q 011908 352 QTKRDADRLAHAMAK-------------SYNCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLVEL 417 (475)
Q Consensus 352 ~~~~~~~~l~~~l~~-------------~~~~~~lh~~~~~~~r~~~~~~F~~-g~~~vLvaT~~l~~GiDip~~~~vI~ 417 (475)
+++..++.++..|.. +.....+||+|++.+|.+++++|++ |+.+|||||+++++|+|+|++++||+
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE
Confidence 999999999999964 2345567899999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 418 VVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 418 ~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
||+|+++..|+ +|| ||. +.|.++.++++.+..
T Consensus 719 yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp ESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999998 555 554 578999999987653
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=368.88 Aligned_cols=326 Identities=21% Similarity=0.262 Sum_probs=227.8
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHH-HHHHHHhCC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EKEFHESAP 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~-~~~l~~~~~ 198 (475)
.+|+++|.++++.++.++++++.+|||+|||++|+++++..+...... +.+.++||++|+++|+.|+ +++++++++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~---~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH---TCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc---CCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999999999999887663321 2246799999999999999 999999987
Q ss_pred C-CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHH------HhCCCCCCCccEEEEeccccccccC-cHHHHHHHH
Q 011908 199 S-LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI------KRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVIL 270 (475)
Q Consensus 199 ~-~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l------~~~~~~~~~l~~vIiDE~H~~~~~~-~~~~~~~il 270 (475)
. +.+..++|+.........+...++|+|+||++|...+ ....+.+.++++|||||+|++.... +...+...+
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 5 8888888888766555555567899999999999887 3445677889999999999986543 222222222
Q ss_pred Hh----C---------CCCCcEEEEeeecChh-----------HHHHHHHhc------------------CCCcEEEe-e
Q 011908 271 ER----L---------PQNRQSMMFSATMPPW-----------IRSLTNKYL------------------KNPLTVDL-V 307 (475)
Q Consensus 271 ~~----~---------~~~~~~l~~SAT~~~~-----------~~~~~~~~~------------------~~~~~~~~-~ 307 (475)
.. . .+.+++++|||||+.. +..+..... ..|..... .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 21 1 1567999999999862 121211111 11111110 0
Q ss_pred cCCcc-c-------------------ccCCeE------------------------------------------------
Q 011908 308 GDSDQ-K-------------------LADGIS------------------------------------------------ 319 (475)
Q Consensus 308 ~~~~~-~-------------------~~~~~~------------------------------------------------ 319 (475)
..... . ......
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 000000
Q ss_pred -----------------------E--E------------------------EEeccCcchhhHHHHHHHhh-c--C-CCc
Q 011908 320 -----------------------L--Y------------------------SIATSMYEKPSIIGQLITEH-A--K-GGK 346 (475)
Q Consensus 320 -----------------------~--~------------------------~~~~~~~~k~~~l~~~~~~~-~--~-~~~ 346 (475)
. . ........|...+..++... . . +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0 0 00000112333333344332 1 2 789
Q ss_pred EEEEeCChHHHHHHHHHHHc-------cCCeeeecCC--------CCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCC
Q 011908 347 CIVFTQTKRDADRLAHAMAK-------SYNCEPLHGD--------ISQSQRERTLSAFRDGRFNILIATDVAARGLDVPN 411 (475)
Q Consensus 347 ~lVf~~~~~~~~~l~~~l~~-------~~~~~~lh~~--------~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~ 411 (475)
+||||++++.++.+++.|.. ++.+..+||+ |++.+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 99999999999999999975 5889999999 99999999999999999999999999999999999
Q ss_pred CCEEEecCCCCChhHHHhhccCCCCCCCcEEEeeChhh
Q 011908 412 VDLVELVVLERKEVQFLSTQISRPGKSRVLSEMLDADL 449 (475)
Q Consensus 412 ~~~vI~~~~~~~~~~~~~gR~gR~g~~~~~~~~~~~~~ 449 (475)
+++||+||+|+++..|+ ||+||+|+.|.+++++.+.+
T Consensus 483 v~~VI~~d~p~s~~~~~-Qr~GRArr~g~~~~l~~~~~ 519 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMV-QARGRARADESTYVLVAHSG 519 (699)
T ss_dssp CCCCEEESCCCCHHHHH-HHHTTSCSSSCEEEEEEESS
T ss_pred CCEEEEeCCCCCHHHHH-HHcCCCCCCCceEEEEEeCC
Confidence 99999999999999998 88888888888877776544
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.1e-40 Score=336.16 Aligned_cols=318 Identities=20% Similarity=0.263 Sum_probs=242.0
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC--C
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--P 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~--~ 198 (475)
+|+++|.++++.+..+ ++++.+|||+|||++++.+++..+.. .+.+++|++|+++|+.||++++.+++ +
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 7999999999999998 99999999999999999988877641 25679999999999999999999997 3
Q ss_pred CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCc
Q 011908 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~ 278 (475)
...+..+.|+........ ....++|+|+||+.+...+....+.+.++++||+||+|++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 447788788776554433 2335799999999999988887778889999999999999866555555555555567889
Q ss_pred EEEEeeecChhHH---HHHHHhcCCCcEEEeecCCcccc---cCCeEEEEE--e--------------------------
Q 011908 279 SMMFSATMPPWIR---SLTNKYLKNPLTVDLVGDSDQKL---ADGISLYSI--A-------------------------- 324 (475)
Q Consensus 279 ~l~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~-------------------------- 324 (475)
+++|||||+.... .+....... ............ ......... .
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIE--HIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCC--EEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCcHHHHHHHHhcChh--eeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999974332 233222111 111111100000 000000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 011908 325 -------------------------------------------------------------------------------- 324 (475)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (475)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence
Q ss_pred ----------------------ccCcchhhHHHHHHHhh---cCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecC---
Q 011908 325 ----------------------TSMYEKPSIIGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHG--- 375 (475)
Q Consensus 325 ----------------------~~~~~k~~~l~~~~~~~---~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~--- 375 (475)
.....|...+..++.+. ..++++||||++++.++.+++.|.. ++.+..+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 02233455566666654 4688999999999999999999965 689999999
Q ss_pred -----CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChh
Q 011908 376 -----DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDAD 448 (475)
Q Consensus 376 -----~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~ 448 (475)
+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|+++..+. +||+||.|+ |.++.++.++
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 99999999999999999999999999999999999999999999999998888 788888887 8999999887
Q ss_pred hhh
Q 011908 449 LLS 451 (475)
Q Consensus 449 ~~~ 451 (475)
+.+
T Consensus 476 t~e 478 (494)
T 1wp9_A 476 TRD 478 (494)
T ss_dssp SHH
T ss_pred CHH
Confidence 654
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.1e-41 Score=366.76 Aligned_cols=284 Identities=20% Similarity=0.263 Sum_probs=223.4
Q ss_pred HHHHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH
Q 011908 110 IVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (475)
Q Consensus 110 l~~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 188 (475)
+.+.+.. .++ +||++|.++++.+++++++++++|||||||++++++++..+ ..+++++|++||++||.|
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---------~~~~~~Lil~PtreLa~Q 136 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLVKQ 136 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---------TTTCCEEEEESSHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------hcCCeEEEEechHHHHHH
Confidence 3344444 455 79999999999999999999999999999998888888776 347889999999999999
Q ss_pred HHHHHHHhC-CCCceEEEEcCCCh---hHHHHHhhCC-CCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc----
Q 011908 189 VEKEFHESA-PSLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS---- 259 (475)
Q Consensus 189 ~~~~l~~~~-~~~~~~~~~g~~~~---~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~---- 259 (475)
+++.++++. .++.+..++|+.+. ......+..+ ++|+|+||++|.+.+.. +.+.+++++|+||+|++..
T Consensus 137 ~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~ 214 (1104)
T 4ddu_A 137 TLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 214 (1104)
T ss_dssp HHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHH
T ss_pred HHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCcccccccc
Confidence 999999965 36788889999887 4455666665 99999999999887764 5577899999999987654
Q ss_pred -------cCcHHH-HHHHHHhCC-----------CCCcEEEEeeec-ChhHHH-HHHHhcCCCcEEEeecCCcccccCCe
Q 011908 260 -------VGFAED-VEVILERLP-----------QNRQSMMFSATM-PPWIRS-LTNKYLKNPLTVDLVGDSDQKLADGI 318 (475)
Q Consensus 260 -------~~~~~~-~~~il~~~~-----------~~~~~l~~SAT~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (475)
++|... +..++..++ .+.|++++|||+ +..+.. +....+. +.+.. .......+
T Consensus 215 ~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~--~~~~~~~i 288 (1104)
T 4ddu_A 215 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR--LVSVARNI 288 (1104)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB--CCCCCCCE
T ss_pred chhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc--CCCCcCCc
Confidence 667777 788888776 789999999994 444332 2233322 11111 11122333
Q ss_pred EEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCee-eecCCCCHHHHHHHHHHHhcCCCcE
Q 011908 319 SLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCE-PLHGDISQSQRERTLSAFRDGRFNI 396 (475)
Q Consensus 319 ~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~-~lh~~~~~~~r~~~~~~F~~g~~~v 396 (475)
....... ++...+..+++.. ++++||||++++.++.++..|.. ++.+. .+||. |++ ++.|++|+.+|
T Consensus 289 ~~~~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~V 357 (1104)
T 4ddu_A 289 THVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINI 357 (1104)
T ss_dssp EEEEESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSE
T ss_pred eeEEEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCE
Confidence 4443333 4666777777774 58999999999999999999954 68888 99993 555 99999999999
Q ss_pred EEE----ecccccCCCCCC-CCEEEecCCCC
Q 011908 397 LIA----TDVAARGLDVPN-VDLVELVVLER 422 (475)
Q Consensus 397 Lva----T~~l~~GiDip~-~~~vI~~~~~~ 422 (475)
||| |+++++|+|+|+ +++||+||+|.
T Consensus 358 LVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 358 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp EEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred EEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999 999999999999 99999999998
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2e-40 Score=359.52 Aligned_cols=330 Identities=18% Similarity=0.201 Sum_probs=203.9
Q ss_pred HCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
-.++.+|+++|.++++.++.++++++++|||+|||++|+++++..+... ..+.+.+++|++||++|+.|+++.+++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~----~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC----CSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc----cccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3467799999999999999999999999999999999999988776442 112267799999999999999999999
Q ss_pred hCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCC-CCCCccEEEEeccccccccCcHH-HHHHHHH
Q 011908 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAE-DVEVILE 271 (475)
Q Consensus 196 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~-~~~~l~~vIiDE~H~~~~~~~~~-~~~~il~ 271 (475)
+++ ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.+++++|+||+|++...+... .+..++.
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 876 7888888888865554445555689999999999999987766 67889999999999988764322 2223333
Q ss_pred h----CCCCCcEEEEeeecCh-----------hHHHHH------------------HHhcCCCcEEEeecCC--ccccc-
Q 011908 272 R----LPQNRQSMMFSATMPP-----------WIRSLT------------------NKYLKNPLTVDLVGDS--DQKLA- 315 (475)
Q Consensus 272 ~----~~~~~~~l~~SAT~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~- 315 (475)
. ..+.+++++|||||.. .+..+. ..+...+......... .....
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1456899999999852 111111 1122222222111100 00000
Q ss_pred -------------CC---------eEEEEE--------------------------------------------------
Q 011908 316 -------------DG---------ISLYSI-------------------------------------------------- 323 (475)
Q Consensus 316 -------------~~---------~~~~~~-------------------------------------------------- 323 (475)
.. ......
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 000000
Q ss_pred -------------------------------------------------eccCcchhhHHHHHHHhh---cCCCcEEEEe
Q 011908 324 -------------------------------------------------ATSMYEKPSIIGQLITEH---AKGGKCIVFT 351 (475)
Q Consensus 324 -------------------------------------------------~~~~~~k~~~l~~~~~~~---~~~~~~lVf~ 351 (475)
......|...+..++.+. ..+.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 000122444455555543 3568999999
Q ss_pred CChHHHHHHHHHHHc-------------cCCeeeecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCCCCCCEEEe
Q 011908 352 QTKRDADRLAHAMAK-------------SYNCEPLHGDISQSQRERTLSAFRD-GRFNILIATDVAARGLDVPNVDLVEL 417 (475)
Q Consensus 352 ~~~~~~~~l~~~l~~-------------~~~~~~lh~~~~~~~r~~~~~~F~~-g~~~vLvaT~~l~~GiDip~~~~vI~ 417 (475)
++++.++.++..|.+ +.....+||+|+..+|.+++++|++ |+++|||||+++++|+|+|++++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 999999999999964 2334556899999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHHhhccCCCC--CCCcEEEeeChhhhh
Q 011908 418 VVLERKEVQFLSTQISRPG--KSRVLSEMLDADLLS 451 (475)
Q Consensus 418 ~~~~~~~~~~~~gR~gR~g--~~~~~~~~~~~~~~~ 451 (475)
||+|+++..|+ ||+|| | +.|.++.+++..+..
T Consensus 719 yD~p~s~~~~i-Qr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 719 YEYSGNVTKMI-QVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp ESCCSCSHHHH-CC--------CCCEEEEESCHHHH
T ss_pred eCCCCCHHHHH-HhcCC-CCCCCCEEEEEEeCCCHH
Confidence 99999999998 55555 4 468999999876653
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.9e-40 Score=356.22 Aligned_cols=307 Identities=20% Similarity=0.218 Sum_probs=233.7
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
.++|+++|.++++.+.+++++++++|||||||++|++++..... .+.+++|++|+++|+.|+++.+.+.++
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---------~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---------NMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---------TTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999999999999999998887653 377899999999999999999999988
Q ss_pred CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCc
Q 011908 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~ 278 (475)
++.+..++|+.... ..++|+|+||++|.+.+......+.++++||+||+|++.+++++..+..++..++++.+
T Consensus 108 ~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 108 DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp -CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 88888888877532 34799999999999988887777889999999999999999999999999999999999
Q ss_pred EEEEeeecChhHHHHHHHhc---CCCcEEEeecCCcccccCCeE------EE----------------------------
Q 011908 279 SMMFSATMPPWIRSLTNKYL---KNPLTVDLVGDSDQKLADGIS------LY---------------------------- 321 (475)
Q Consensus 279 ~l~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~---------------------------- 321 (475)
++++|||+++.. .+...+. ..+..+.... .. ..+.... .+
T Consensus 181 iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~-~r-~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 181 FILLSATVPNTY-EFANWIGRTKQKNIYVISTP-KR-PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEEECCCTTHH-HHHHHHHHHHTCCEEEEECS-SC-SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred EEEEcCCCCChH-HHHHHHhcccCCceEEEecC-CC-CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 999999987543 2222221 1111111100 00 0000000 00
Q ss_pred ---------------------------------------------------------EEeccCcchhhHHHHHHHhhcCC
Q 011908 322 ---------------------------------------------------------SIATSMYEKPSIIGQLITEHAKG 344 (475)
Q Consensus 322 ---------------------------------------------------------~~~~~~~~k~~~l~~~~~~~~~~ 344 (475)
........+...+...+... ..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~ 336 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-EL 336 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CC
Confidence 00000111222333344333 45
Q ss_pred CcEEEEeCChHHHHHHHHHHHc-cC---------------------------------------CeeeecCCCCHHHHHH
Q 011908 345 GKCIVFTQTKRDADRLAHAMAK-SY---------------------------------------NCEPLHGDISQSQRER 384 (475)
Q Consensus 345 ~~~lVf~~~~~~~~~l~~~l~~-~~---------------------------------------~~~~lh~~~~~~~r~~ 384 (475)
.++||||++++.++.++..|.. ++ .+..+||+|++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 6999999999999999988843 12 4789999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCC---------ChhHHH--hhccCCCC--CCCcEEEeeC
Q 011908 385 TLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLER---------KEVQFL--STQISRPG--KSRVLSEMLD 446 (475)
Q Consensus 385 ~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~---------~~~~~~--~gR~gR~g--~~~~~~~~~~ 446 (475)
+++.|.+|.++|||||+++++|+|+|+ ..||+++.+. +...|+ +||+||.| ..|.|++++.
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999999999999999999 6666666555 777777 78888877 3567777773
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.2e-39 Score=336.11 Aligned_cols=319 Identities=17% Similarity=0.174 Sum_probs=242.7
Q ss_pred HCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
..|+ .||++|..+++.+++|+ +.+++||+|||++|.+|++...+. |.+++|++||++||.|.++++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 4688 89999999999999988 999999999999999999854432 66899999999999999988887
Q ss_pred hCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhC------CCCCCCccEEEEecccccc-ccC----
Q 011908 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SVG---- 261 (475)
Q Consensus 196 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~l~~vIiDE~H~~~-~~~---- 261 (475)
++. ++.+.+++||.+...+... .+++|+||||++| .+++... ...+..+.++|+||+|+++ +.+
T Consensus 147 l~~~lgl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 147 IFEFLGLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHTTCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHhhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 653 7889999999876544333 3589999999999 6666543 3557889999999999987 553
Q ss_pred -----------cHHHHHHHHHhCC---------CCCcEE-----------------EEeeecChhHHHHH-----HHhc-
Q 011908 262 -----------FAEDVEVILERLP---------QNRQSM-----------------MFSATMPPWIRSLT-----NKYL- 298 (475)
Q Consensus 262 -----------~~~~~~~il~~~~---------~~~~~l-----------------~~SAT~~~~~~~~~-----~~~~- 298 (475)
|...+..++..++ +.+|++ ++|||.+.....+. ..++
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 6788889999886 367777 88999764333321 1122
Q ss_pred CCCcEEE------eecCCc----------------------------cc-------------------------------
Q 011908 299 KNPLTVD------LVGDSD----------------------------QK------------------------------- 313 (475)
Q Consensus 299 ~~~~~~~------~~~~~~----------------------------~~------------------------------- 313 (475)
.+...+. +..... ..
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 1111110 000000 00
Q ss_pred ----------ccC-----CeE-EEEEeccCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecC
Q 011908 314 ----------LAD-----GIS-LYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHG 375 (475)
Q Consensus 314 ----------~~~-----~~~-~~~~~~~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~ 375 (475)
++. ... ...+..+..+|...+...+.+ +..+.++||||+|++.++.++..|. .++++..+||
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg 464 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA 464 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 000 000 012233445666667666654 3467899999999999999999996 4799999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCC--------CCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEee
Q 011908 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVP--------NVDLVELVVLERKEVQFL--STQISRPGKSRVLSEML 445 (475)
Q Consensus 376 ~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip--------~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~ 445 (475)
++...++..+.+.|+.| .|+|||+++++|+||+ ++.+||+++.|.+...|. +||+||.|++|.+++|+
T Consensus 465 ~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 465 KNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp SCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 99888887666666555 6999999999999999 788999999999999998 99999999999999999
Q ss_pred Chhhh
Q 011908 446 DADLL 450 (475)
Q Consensus 446 ~~~~~ 450 (475)
+.+|.
T Consensus 543 s~eD~ 547 (844)
T 1tf5_A 543 SMEDE 547 (844)
T ss_dssp ETTSS
T ss_pred cHHHH
Confidence 98774
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.2e-40 Score=362.13 Aligned_cols=279 Identities=19% Similarity=0.298 Sum_probs=214.5
Q ss_pred HHHHH-CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHH
Q 011908 112 AALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 112 ~~l~~-~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 190 (475)
+.+.+ .|+. | ++|.++++.+++++++++++|||||||+ +.++++..+.. .+++++|++||++||.|++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q~~ 116 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQAA 116 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHHHH
Confidence 34443 6887 9 9999999999999999999999999998 77887776643 3678999999999999999
Q ss_pred HHHHHhCC--CC----ceEEEEcCCChhHH---HHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccC
Q 011908 191 KEFHESAP--SL----DTICVYGGTPISHQ---MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261 (475)
Q Consensus 191 ~~l~~~~~--~~----~~~~~~g~~~~~~~---~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~ 261 (475)
+.+++++. ++ .+..++|+.....+ ...+.. ++|+|+||++|.+.+.+ +++++++|+||+|++++
T Consensus 117 ~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~-- 189 (1054)
T 1gku_B 117 ETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK-- 189 (1054)
T ss_dssp HHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--
T ss_pred HHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--
Confidence 99998876 44 67788888876653 344445 89999999999987665 67899999999999988
Q ss_pred cHHHHHHHHHhCC-----------CCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcch
Q 011908 262 FAEDVEVILERLP-----------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK 330 (475)
Q Consensus 262 ~~~~~~~il~~~~-----------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (475)
++..++.++..++ ...|++++|||+++. ..+...++.++..+.+. ........+..... ..++
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEE---SCCC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEe---chhH
Confidence 5778888887773 567899999999886 43222222222222211 11111222333333 3556
Q ss_pred hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEE----ecccccC
Q 011908 331 PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFNILIA----TDVAARG 406 (475)
Q Consensus 331 ~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva----T~~l~~G 406 (475)
...+..+++.. ++++||||++++.++.+++.|...+.+..+||++ .++++.|++|+.+|||| |+++++|
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 77777777665 5789999999999999999996558999999998 37789999999999999 8999999
Q ss_pred CCCCCC-CEEEecCCC
Q 011908 407 LDVPNV-DLVELVVLE 421 (475)
Q Consensus 407 iDip~~-~~vI~~~~~ 421 (475)
+|+|+| ++||+++.|
T Consensus 337 IDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCP 352 (1054)
T ss_dssp SCCTTTCCEEEEESCC
T ss_pred cccCCcccEEEEeCCC
Confidence 999995 999999999
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.9e-39 Score=362.81 Aligned_cols=336 Identities=16% Similarity=0.202 Sum_probs=246.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHhhhhhc-CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
+.+...+.+...+|..++|+|.++++.++. ++|+++++|||||||++|.++++..+.+ ..+.+++|++|+++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-------~~~~kavyi~P~ra 983 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPMEA 983 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChHH
Confidence 345566777777888999999999999975 4679999999999999999999999876 34667999999999
Q ss_pred hHHHHHHHHHHhCC---CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC--CCCCCccEEEEeccccccc
Q 011908 185 LAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 185 La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~l~~vIiDE~H~~~~ 259 (475)
||.|.++.+.+.+. ++++..++|+.....+ . ...++|+|+||+++..++.+.. ..+.+++++|+||+|.+.+
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~--~-~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK--L-LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH--H-HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcchh--h-cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 99999999987543 5677777776553322 2 2347999999999977776532 2367899999999998876
Q ss_pred cCcHHHHHHHHH-------hCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcch--
Q 011908 260 VGFAEDVEVILE-------RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEK-- 330 (475)
Q Consensus 260 ~~~~~~~~~il~-------~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-- 330 (475)
. .+..++.++. ..+++.|+++||||+++ ...+..+....+..+........++ .+..+.........
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPv--pL~~~i~~~~~~~~~~ 1136 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPV--PLELHIQGFNISHTQT 1136 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSS--CEEEEEEEECCCSHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCC--CeEEEEEeccCCCchh
Confidence 5 6766665554 34678999999999975 3455544433332222122111111 12222222222111
Q ss_pred -----hhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-----------------------------------cCCe
Q 011908 331 -----PSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----------------------------------SYNC 370 (475)
Q Consensus 331 -----~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-----------------------------------~~~~ 370 (475)
...+...+.....+++++|||+++..++.++..+.. ...+
T Consensus 1137 ~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GI 1216 (1724)
T 4f92_B 1137 RLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGV 1216 (1724)
T ss_dssp HHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTE
T ss_pred hhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCE
Confidence 223444556667788999999999999988776632 1347
Q ss_pred eeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe----cC------CCCChhHHH--hhccCCCCC-
Q 011908 371 EPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL----VV------LERKEVQFL--STQISRPGK- 437 (475)
Q Consensus 371 ~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~----~~------~~~~~~~~~--~gR~gR~g~- 437 (475)
+.+||+|++++|..+++.|++|.++|||||+++++|||+|+.++||. |+ .|.+..+|+ +||+||.|.
T Consensus 1217 a~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d 1296 (1724)
T 4f92_B 1217 GYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD 1296 (1724)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC
Confidence 88999999999999999999999999999999999999999888873 22 245666776 888888886
Q ss_pred -CCcEEEeeChhhhhhcCC
Q 011908 438 -SRVLSEMLDADLLSSQGS 455 (475)
Q Consensus 438 -~~~~~~~~~~~~~~~~~~ 455 (475)
.|.|++++.+.+...+..
T Consensus 1297 ~~G~avll~~~~~~~~~~~ 1315 (1724)
T 4f92_B 1297 DEGRCVIMCQGSKKDFFKK 1315 (1724)
T ss_dssp SCEEEEEEEEGGGHHHHHH
T ss_pred CceEEEEEecchHHHHHHH
Confidence 588999998877654433
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.2e-38 Score=323.39 Aligned_cols=309 Identities=15% Similarity=0.171 Sum_probs=225.1
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh--
Q 011908 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-- 196 (475)
Q Consensus 119 ~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~-- 196 (475)
..+|+++|.++++.+.+++++++++|||+|||++++.++...+.. .+.+++|++||++|+.||++++.++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 348999999999999999999999999999999998888877643 1348999999999999999999988
Q ss_pred CCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCC
Q 011908 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (475)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~ 276 (475)
+++..+..+.++.....+ ...+.+|+|+||+.+.. .....+.++++||+||+|++.. ..+..++..+++.
T Consensus 183 ~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~ 252 (510)
T 2oca_A 183 FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (510)
T ss_dssp SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTC
T ss_pred CCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccC
Confidence 445677777777665443 34568999999996543 2334577899999999999754 5567778888888
Q ss_pred CcEEEEeeecChhHHHHH-HHhcCCCcEEEeecCC--cccccCCeEEEE--Eecc---------------------Ccch
Q 011908 277 RQSMMFSATMPPWIRSLT-NKYLKNPLTVDLVGDS--DQKLADGISLYS--IATS---------------------MYEK 330 (475)
Q Consensus 277 ~~~l~~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~---------------------~~~k 330 (475)
.++++|||||++...... ...+..+......... ............ .... ...+
T Consensus 253 ~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 253 MFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp CEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred cEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 899999999976532211 1111122222111100 000000011111 1000 0112
Q ss_pred hhHHHHHHHhh-cCCC-cEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccC
Q 011908 331 PSIIGQLITEH-AKGG-KCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT-DVAARG 406 (475)
Q Consensus 331 ~~~l~~~~~~~-~~~~-~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT-~~l~~G 406 (475)
...+..++.+. ..++ +++|||+ .++++.+++.|.+ +..+..+||+|+..+|+++++.|++|+.+||||| +++++|
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G 411 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG 411 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc
Confidence 23344444332 2334 4555555 9999999999965 3689999999999999999999999999999999 999999
Q ss_pred CCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeC
Q 011908 407 LDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLD 446 (475)
Q Consensus 407 iDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~ 446 (475)
+|+|++++||+++++.+...++ +||+||.|+++.++.+++
T Consensus 412 iDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 412 ISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999988887 899999998886666665
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.4e-39 Score=361.35 Aligned_cols=330 Identities=18% Similarity=0.224 Sum_probs=239.3
Q ss_pred CCCCCcHHHHHHhhhhh-cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhcc--CCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 118 GISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~-~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~--~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
|+.+|+++|.++++.++ .++|+++++|||||||++|.++++..+.+..... ....+.+++|++|+++||.|.++.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 67889999999999877 4689999999999999999999999997643321 12357789999999999999999998
Q ss_pred HhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC--CCCCCccEEEEeccccccccCcHHHHHHHH
Q 011908 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (475)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~--~~~~~l~~vIiDE~H~~~~~~~~~~~~~il 270 (475)
+.+. ++.+..++|+.....+ ...+++|+|+||+++..++.+.. ..++++++||+||+|.+.+ .+|..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8765 5678888888764432 12348999999999866654432 1367899999999997766 5888777665
Q ss_pred Hh-------CCCCCcEEEEeeecChhHHHHHHHhcCCCc-EEEeecCCcccccCCeEEEEEeccCcchh-------hHHH
Q 011908 271 ER-------LPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMYEKP-------SIIG 335 (475)
Q Consensus 271 ~~-------~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-------~~l~ 335 (475)
.+ .+++.|+++||||+++ ...++.+....+. .....+....+ ..+....+........ ..+.
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RP--vpL~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRP--VPLEQTYVGITEKKAIKRFQIMNEIVY 308 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCS--SCEEEECCEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCcc--CccEEEEeccCCcchhhhhHHHHHHHH
Confidence 43 4678999999999876 3444443322211 11111111111 1122222222222211 1233
Q ss_pred HHHHhhcCCCcEEEEeCChHHHHHHHHHHHc--------------------------------------cCCeeeecCCC
Q 011908 336 QLITEHAKGGKCIVFTQTKRDADRLAHAMAK--------------------------------------SYNCEPLHGDI 377 (475)
Q Consensus 336 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~--------------------------------------~~~~~~lh~~~ 377 (475)
..+.+...++++||||+++..++.++..|.+ ...++++||+|
T Consensus 309 ~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 309 EKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 3344455678999999999999988887742 12378899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe----cCCC------CChhHHH--hhccCCCCC--CCcEEE
Q 011908 378 SQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL----VVLE------RKEVQFL--STQISRPGK--SRVLSE 443 (475)
Q Consensus 378 ~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~----~~~~------~~~~~~~--~gR~gR~g~--~~~~~~ 443 (475)
+.++|..+++.|++|.++|||||++++.|||+|..++||. |++. .+..+|+ .||+||.|. .|.+++
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 9999999999999999999999999999999999998884 5443 3556666 777777764 588899
Q ss_pred eeChhhhhhcC
Q 011908 444 MLDADLLSSQG 454 (475)
Q Consensus 444 ~~~~~~~~~~~ 454 (475)
++.+++...+.
T Consensus 469 ~~~~~~~~~~~ 479 (1724)
T 4f92_B 469 ITSHGELQYYL 479 (1724)
T ss_dssp EEESTTCCHHH
T ss_pred EecchhHHHHH
Confidence 98887765443
No 40
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.8e-38 Score=326.38 Aligned_cols=319 Identities=18% Similarity=0.173 Sum_probs=218.4
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.|. .|+++|..+++.++.|+ +.+++||||||++|++|++...+. +++++|++||++||.|+++.+..+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHH
Confidence 354 89999999999999987 999999999999999999865532 678999999999999999998886
Q ss_pred CC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhC------CCCCCCccEEEEecccccc-cc------
Q 011908 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SV------ 260 (475)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~l~~vIiDE~H~~~-~~------ 260 (475)
+. ++++.+++||.+...+ ....+++|+||||++| .+++... ...+++++++|+||+|+++ +.
T Consensus 139 ~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 54 7889999999886533 3334589999999999 6877654 2557899999999999998 43
Q ss_pred ---------CcHHHHHHHHHhCCC--------------------CCcEE------------------------EEeeecC
Q 011908 261 ---------GFAEDVEVILERLPQ--------------------NRQSM------------------------MFSATMP 287 (475)
Q Consensus 261 ---------~~~~~~~~il~~~~~--------------------~~~~l------------------------~~SAT~~ 287 (475)
+|...+..++..+++ .+|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 255677777777753 44543 7899875
Q ss_pred hhHHHHH-----HHhcC--------CCcEEEee---cC------------------------CcccccCCeE--------
Q 011908 288 PWIRSLT-----NKYLK--------NPLTVDLV---GD------------------------SDQKLADGIS-------- 319 (475)
Q Consensus 288 ~~~~~~~-----~~~~~--------~~~~~~~~---~~------------------------~~~~~~~~~~-------- 319 (475)
+....+. ..++. ++..+.+. +. ........+.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 4222211 11110 00000000 00 0000000000
Q ss_pred ---------------------------------------EEEEeccCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHH
Q 011908 320 ---------------------------------------LYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADR 359 (475)
Q Consensus 320 ---------------------------------------~~~~~~~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~ 359 (475)
...+..+..+|...+...+.. +..+.++||||+|++.++.
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 001233445567677766654 4567899999999999999
Q ss_pred HHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC--------------------------
Q 011908 360 LAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV-------------------------- 412 (475)
Q Consensus 360 l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~-------------------------- 412 (475)
++..|. .++++..+||++...++..+.+.|+.| .|+|||+++++|+||+..
T Consensus 457 Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~ 534 (853)
T 2fsf_A 457 VSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 534 (853)
T ss_dssp HHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhh
Confidence 999995 579999999999888888888888888 699999999999999974
Q ss_pred -----------CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 413 -----------DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 413 -----------~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
.+||+++.|.+...|. +||+||.|++|.+++|++.+|..
T Consensus 535 ~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 535 VRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred hhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 5999999999999998 99999999999999999987753
No 41
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.9e-38 Score=321.84 Aligned_cols=295 Identities=19% Similarity=0.211 Sum_probs=218.0
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~ 199 (475)
.+|+++|.++++.+.+++++++++|||+|||++|+.++... +.+++|++|+++|+.||++++.++ +
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 48999999999999999899999999999999998877643 557999999999999999999994 6
Q ss_pred Cc-eEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCc
Q 011908 200 LD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 200 ~~-~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~ 278 (475)
+. +..+.|+... ..+|+|+|++.+...+..- ..++++||+||+|++.+.++.. ++..+ +..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 77 7766665542 3699999999987665421 2468999999999998877643 44444 5678
Q ss_pred EEEEeeecChh-------------------HHHHHHHhcCCCcEEEeecCCccc---c---------------------c
Q 011908 279 SMMFSATMPPW-------------------IRSLTNKYLKNPLTVDLVGDSDQK---L---------------------A 315 (475)
Q Consensus 279 ~l~~SAT~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~---~---------------------~ 315 (475)
++++||||.+. ...+...++..+....+..+.... . .
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 99999999731 222222222222111110000000 0 0
Q ss_pred CCeEEE---------------------EEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHccCCeeeec
Q 011908 316 DGISLY---------------------SIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLH 374 (475)
Q Consensus 316 ~~~~~~---------------------~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~lh 374 (475)
..+... .+......|...+..+++.. .++++||||++.+.++.+++.| .+..+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l----~~~~~~ 375 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVF----LIPAIT 375 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHT----TCCBCC
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHh----Ccceee
Confidence 000000 00012233556677777763 6789999999999999999887 477899
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCC-CcE--EEeeChhh
Q 011908 375 GDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS-RVL--SEMLDADL 449 (475)
Q Consensus 375 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~-~~~--~~~~~~~~ 449 (475)
|+++..+|+++++.|++|+.+|||||+++++|+|+|++++||++++|+++..+. .||+||.|.+ +.+ +.+++.+.
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999998887 8888888865 443 44555443
Q ss_pred h
Q 011908 450 L 450 (475)
Q Consensus 450 ~ 450 (475)
.
T Consensus 456 ~ 456 (472)
T 2fwr_A 456 G 456 (472)
T ss_dssp C
T ss_pred c
Confidence 3
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=8.9e-37 Score=314.14 Aligned_cols=317 Identities=17% Similarity=0.173 Sum_probs=242.4
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.|+ .|+++|..+++.+..|+ +.+++||+|||++|.+|++...+. |.+++|++||++||.|.++++..+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 577 89999999999999986 999999999999999999755533 667999999999999999888876
Q ss_pred CC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhC------CCCCCCccEEEEecccccc-cc------
Q 011908 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SV------ 260 (475)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~------~~~~~~l~~vIiDE~H~~~-~~------ 260 (475)
+. ++.+.+++||.+...+... .+++|+||||++| .+++... ...+..+.++|+||+|+++ +.
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r~~~--y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDERRVA--YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 54 7889999999886544333 3589999999999 6777653 3567889999999999998 32
Q ss_pred ---------CcHHHHHHHHHhCC---------CCCcEE-----------------EEeeecChhHHHHH-----HHhcC-
Q 011908 261 ---------GFAEDVEVILERLP---------QNRQSM-----------------MFSATMPPWIRSLT-----NKYLK- 299 (475)
Q Consensus 261 ---------~~~~~~~~il~~~~---------~~~~~l-----------------~~SAT~~~~~~~~~-----~~~~~- 299 (475)
+|...+..++..++ +.+|++ ++|||.++....+. ..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 47788999999997 677888 88999875433321 11221
Q ss_pred CC-------cEEEeecCCcccc----------------------cCC------eE-------------------------
Q 011908 300 NP-------LTVDLVGDSDQKL----------------------ADG------IS------------------------- 319 (475)
Q Consensus 300 ~~-------~~~~~~~~~~~~~----------------------~~~------~~------------------------- 319 (475)
+. ..+.+. ..-..+ ... +.
T Consensus 334 d~dYiV~dg~vviVD-e~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVD-EFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp TTTEEECSSCEEEBC-SSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred ccceeeecCceEEEe-cccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 11 111111 000000 000 00
Q ss_pred ----------------------EEEEeccCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecC
Q 011908 320 ----------------------LYSIATSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHG 375 (475)
Q Consensus 320 ----------------------~~~~~~~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~ 375 (475)
...+..+..+|...+...+.+ +..+.++||||+|++.++.++..|. .++++..+||
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLna 492 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA 492 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECS
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecC
Confidence 001222334466666655544 4567899999999999999999995 4799999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCC-------------------------------------------
Q 011908 376 DISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNV------------------------------------------- 412 (475)
Q Consensus 376 ~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~------------------------------------------- 412 (475)
++...++..+.+.|+.| .|+|||+++++|+||+..
T Consensus 493 k~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (922)
T 1nkt_A 493 KYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKE 570 (922)
T ss_dssp SCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 98877777777788777 699999999999999975
Q ss_pred ---------CEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhh
Q 011908 413 ---------DLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 413 ---------~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
.+||+++.|.+...|. +||+||.|++|.+.+|++.+|.
T Consensus 571 ~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 571 AKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999988 9999999999999999987765
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.9e-37 Score=311.21 Aligned_cols=285 Identities=15% Similarity=0.104 Sum_probs=206.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcE-EEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 118 GISKLFPIQKAVLEPAMQGRDM-IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~-li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
|+.++++.|+ +++.++++++. ++++|||||||++|+++++..+.. .+.+++|++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~-- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALR-- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhc--
Confidence 5678899985 89999988876 999999999999999999877654 25789999999999999999886
Q ss_pred CCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHH-hCCC
Q 011908 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-RLPQ 275 (475)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~-~~~~ 275 (475)
+..+......... ....+..|.++|++.+.+.+... ..+.+++++|+||+|++ +..+......+.. ..++
T Consensus 70 --g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 70 --GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp --TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred --Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 3333221111110 11234679999999998877654 45789999999999986 3323332222222 2346
Q ss_pred CCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChH
Q 011908 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355 (475)
Q Consensus 276 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~ 355 (475)
++|+++||||+++..... +..++..+....... ......+...+.+ .++++||||++++
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p----------------~~~~~~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIP----------------ERSWNTGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCC----------------SSCCSSSCHHHHH--CCSCEEEECSSHH
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCccCC----------------chhhHHHHHHHHh--CCCCEEEEcCCHH
Confidence 789999999998743221 222333332211000 0000111222333 3569999999999
Q ss_pred HHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecC---------------
Q 011908 356 DADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVV--------------- 419 (475)
Q Consensus 356 ~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~--------------- 419 (475)
+++.+++.|.+ ++.+..+||++. +++++.|++|+.+|||||+++++|+|+|+ ++||+++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 99999999964 688999999864 57899999999999999999999999999 9999998
Q ss_pred -----CCCChhHHH--hhccCCCCC-CCcEEEeeChh
Q 011908 420 -----LERKEVQFL--STQISRPGK-SRVLSEMLDAD 448 (475)
Q Consensus 420 -----~~~~~~~~~--~gR~gR~g~-~~~~~~~~~~~ 448 (475)
.|.+..+|+ +||+||.|+ .|.|++++..+
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 888888888 788888887 77888776543
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4.3e-38 Score=314.44 Aligned_cols=266 Identities=18% Similarity=0.164 Sum_probs=181.4
Q ss_pred hhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCCh
Q 011908 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~ 211 (475)
.+.+++++++++|||||||++|++++++.+.. .+++++|++||++||.|+++.+..+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~----~v~~~~~~~~- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFS- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcC----CeEEecccce-
Confidence 46678999999999999999999999987754 2678999999999999999998854 2222111110
Q ss_pred hHHHHHhhCCCCEEEEccHHH---------HHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC-CCCCcEEE
Q 011908 212 SHQMRALDYGVDAVVGTPGRV---------IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMM 281 (475)
Q Consensus 212 ~~~~~~~~~~~~Ilv~T~~~l---------~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-~~~~~~l~ 281 (475)
.++||+++ ...+. ....+.+++++|+||+|++ +.++...+..+.... +.++|+++
T Consensus 71 -------------~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 71 -------------AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -------------CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -------------eccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 24555433 22222 3345889999999999997 332333323222222 36789999
Q ss_pred EeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHH
Q 011908 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA 361 (475)
Q Consensus 282 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~ 361 (475)
||||+++.+..+... .. .+...........+...+..+.+ .++++||||++++.++.++
T Consensus 136 ~SAT~~~~~~~~~~~---~~---------------~~~~~~~~~~~~~~~~~~~~l~~---~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 136 MTATPPGTSDEFPHS---NG---------------EIEDVQTDIPSEPWNTGHDWILA---DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp ECSSCTTCCCSSCCC---SS---------------CEEEEECCCCSSCCSSSCHHHHH---CCSCEEEECSCHHHHHHHH
T ss_pred EeCCCCchhhhhhhc---CC---------------CeeEeeeccChHHHHHHHHHHHh---cCCCEEEEeCCHHHHHHHH
Confidence 999998754322110 00 01111111122222333333333 3679999999999999999
Q ss_pred HHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe-------------------cCCC
Q 011908 362 HAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL-------------------VVLE 421 (475)
Q Consensus 362 ~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~-------------------~~~~ 421 (475)
+.|.. ++.+..+|| ++|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 99964 689999999 4688999999999999999999999999999 999996 7888
Q ss_pred CChhHHH--hhccCCC-CCCCcEEEee---Chhhhh
Q 011908 422 RKEVQFL--STQISRP-GKSRVLSEML---DADLLS 451 (475)
Q Consensus 422 ~~~~~~~--~gR~gR~-g~~~~~~~~~---~~~~~~ 451 (475)
.+..+|+ +||+||. |+.|.|++++ ++++..
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~ 305 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAH 305 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTT
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhh
Confidence 8888888 8888886 5789999997 454443
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.3e-37 Score=321.64 Aligned_cols=297 Identities=15% Similarity=0.124 Sum_probs=215.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 104 ~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
+++++.+.+.+... ...++|+|+.+++.+.++++++++++||||||++|+++++..+.. .+.+++|++||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~Ptr 225 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTR 225 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChH
Confidence 45666655555442 356788888889999999999999999999999999999988754 257899999999
Q ss_pred HhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcH
Q 011908 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 184 ~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~ 263 (475)
+||.|+++.+.. ..+. +.+.. .. .....+..+.+.|.+.+.+.+... ..+++++++|+||+|++ +.++.
T Consensus 226 eLa~Qi~~~l~~----~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 226 VVAAEMEEALRG----LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHHHHTTT----SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHHHHhcC----Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHH
Confidence 999999998873 2332 11111 00 011123567788888887766554 34789999999999998 55577
Q ss_pred HHHHHHHHhCC-CCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhc
Q 011908 264 EDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHA 342 (475)
Q Consensus 264 ~~~~~il~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~ 342 (475)
..+..++..++ ++.|+++||||+++....+.. .++..+.+.... ........+..+. +
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~---------------~~~~~~~ll~~l~-~-- 353 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI---------------PERSWNTGFDWIT-D-- 353 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSSCCSSSCHHHH-H--
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC---------------CHHHHHHHHHHHH-h--
Confidence 77777776664 678999999999875432211 122222221110 1111122233333 2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEE------
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLV------ 415 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~v------ 415 (475)
.++++||||+++++++.+++.|.+ ++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 367999999999999999999954 6899999985 688899999999999999999999999997 9988
Q ss_pred --------------EecCCCCChhHHH--hhccCCCCC-CCcEEEeeC
Q 011908 416 --------------ELVVLERKEVQFL--STQISRPGK-SRVLSEMLD 446 (475)
Q Consensus 416 --------------I~~~~~~~~~~~~--~gR~gR~g~-~~~~~~~~~ 446 (475)
|+++.|.+..+|+ +||+||.|. .|.|+++++
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 6666788888888 888888864 789999997
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8e-37 Score=312.76 Aligned_cols=277 Identities=17% Similarity=0.192 Sum_probs=208.3
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~ 199 (475)
..++.+|..+++.+..+++++++||||||||+++.+++++. +.+++|++||++||.|+++.+.+.+ +
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~-g 282 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAH-G 282 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHH-S
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHh-C
Confidence 35677788888888888899999999999999998877641 5689999999999999999887765 3
Q ss_pred CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCc-
Q 011908 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ- 278 (475)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~- 278 (475)
..+....|+.. ...+.+|+|+||++| +....+.+++++++|+||+|.+ +.+|...+..++..++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCc
Confidence 45555666643 345689999999997 4566677889999999999854 45577788889998887776
Q ss_pred -EEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHH
Q 011908 279 -SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDA 357 (475)
Q Consensus 279 -~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~ 357 (475)
+++||||+++.+. ...+....+.-... ...... ..+.. + ...+++++||||++++++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~~~----~~i~~~------~~~~~-----l-~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALSNT----GEIPFY------GKAIP-----I-EAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECBSC----SSEEET------TEEEC-----G-GGSSSSEEEEECSCHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeeccc----chhHHH------Hhhhh-----h-hhccCCcEEEEeCCHHHH
Confidence 7888999987321 11222211110000 001000 00000 1 122578999999999999
Q ss_pred HHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEE----------ecC-------
Q 011908 358 DRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVE----------LVV------- 419 (475)
Q Consensus 358 ~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI----------~~~------- 419 (475)
+.+++.|.+ ++.+..+||+|++++ |.++..+|||||+++++|||+| +++|| +||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 999999964 689999999999875 4566679999999999999997 99998 566
Q ss_pred ----CCCChhHHH--hhccCCCCCCCcEEEeeChhhhhh
Q 011908 420 ----LERKEVQFL--STQISRPGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 420 ----~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~ 452 (475)
.|.+...|+ +||+|| |+.|. +.|+++++...
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 788888888 788888 77888 99999887654
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=8.4e-37 Score=317.38 Aligned_cols=281 Identities=16% Similarity=0.149 Sum_probs=198.4
Q ss_pred CCcHHHH-----HHhhhhh------cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHH
Q 011908 121 KLFPIQK-----AVLEPAM------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (475)
Q Consensus 121 ~l~~~Q~-----~~i~~i~------~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 189 (475)
.||++|+ ++++.++ +++++++++|||||||++|+++++..+.. .+.+++|++||++||.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHH
Confidence 7999999 9999888 88999999999999999999999988654 267899999999999999
Q ss_pred HHHHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHH
Q 011908 190 EKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (475)
Q Consensus 190 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~i 269 (475)
++.+..+. +....+... ..-..+.-+-+.+.+.+.+.+... ..+++++++|+||+|++ +..+...+..+
T Consensus 287 ~~~l~~~~----i~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l 355 (673)
T 2wv9_A 287 AEALRGLP----VRYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYI 355 (673)
T ss_dssp HHHTTTSC----CEECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHH
T ss_pred HHHHhcCC----eeeeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHH
Confidence 99988652 111111000 001112234455656666655543 56889999999999997 22122223333
Q ss_pred HHhC-CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEE
Q 011908 270 LERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCI 348 (475)
Q Consensus 270 l~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~l 348 (475)
...+ +.++|+++||||+++.+..+... ......+ ............+..+.+ .++++|
T Consensus 356 ~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v---------------~~~~~~~~~~~~l~~l~~---~~~~~l 414 (673)
T 2wv9_A 356 ATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDV---------------SSEIPDRAWSSGFEWITD---YAGKTV 414 (673)
T ss_dssp HHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEE---------------ECCCCSSCCSSCCHHHHS---CCSCEE
T ss_pred HHhccccCCcEEEEcCCCChhhhhhccc---CCceEEE---------------eeecCHHHHHHHHHHHHh---CCCCEE
Confidence 3333 26789999999998753321110 1111111 001111222233333332 478999
Q ss_pred EEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe----------
Q 011908 349 VFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL---------- 417 (475)
Q Consensus 349 Vf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~---------- 417 (475)
|||+++++++.+++.|.. ++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 415 VF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi 489 (673)
T 2wv9_A 415 WFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTIL 489 (673)
T ss_dssp EECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEE
T ss_pred EEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceee
Confidence 999999999999999965 6899999994 789999999999999999999999999999 999997
Q ss_pred ----------cCCCCChhHHH--hhccCCC-CCCCcEEEeeC
Q 011908 418 ----------VVLERKEVQFL--STQISRP-GKSRVLSEMLD 446 (475)
Q Consensus 418 ----------~~~~~~~~~~~--~gR~gR~-g~~~~~~~~~~ 446 (475)
++.|.+...|+ +||+||. |+.|.|++++.
T Consensus 490 ~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 490 DEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred ecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 45777878887 8888888 67889999963
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.9e-36 Score=320.55 Aligned_cols=331 Identities=16% Similarity=0.193 Sum_probs=236.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhc-CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceE
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~-~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 176 (475)
..+|+++++++.+.+.+...+ ..|++.|++++..++. +++++++||||||||+ +++++....... .+.+.++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~----~~~g~~i 143 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP----HLENTQV 143 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG----GGGTCEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc----cCCCceE
Confidence 346889999999999999988 5789999999888775 4679999999999998 344442111110 1225679
Q ss_pred EEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCC-ChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGT-PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 177 lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
++++|+++|+.|+++.+.+.+. ..+....|.. ... .......+|+++||+++...+.... .+.+++++|+||+|
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~-~~v~~~vG~~i~~~---~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlDEah 218 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMD-VKLGEEVGYSIRFE---NKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAH 218 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTT-CCBTTTEEEEETTE---EECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEECSGG
T ss_pred EecCchHHHHHHHHHHHHHHhC-Cchhheecceeccc---cccCCCCCEEEECHHHHHHHHhhCc-cccCCCEEEecCcc
Confidence 9999999999999998876552 2211111111 100 0112347999999999998776643 48899999999999
Q ss_pred c-ccccCc-HHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhh-
Q 011908 256 Q-MLSVGF-AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPS- 332 (475)
Q Consensus 256 ~-~~~~~~-~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~- 332 (475)
. .++..+ ...+..+.... ++.++++||||++. ..+ ..++.+...+.+.+... .+..++......+...
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l-~~~~~~~~vi~v~gr~~-----pv~~~~~~~~~~~~~~~ 289 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKF-QRYFNDAPLLAVPGRTY-----PVELYYTPEFQRDYLDS 289 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHH-HHHTTSCCEEECCCCCC-----CEEEECCSSCCSCHHHH
T ss_pred ccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHH-HHHhcCCCcccccCccc-----ceEEEEecCCchhHHHH
Confidence 5 444222 23334444443 67899999999965 333 34555555555433321 2334433333333322
Q ss_pred HHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHHc------------cCCeeeecCCCCHHHHHHHHHHHh-----cCC
Q 011908 333 IIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMAK------------SYNCEPLHGDISQSQRERTLSAFR-----DGR 393 (475)
Q Consensus 333 ~l~~~~~~~--~~~~~~lVf~~~~~~~~~l~~~l~~------------~~~~~~lh~~~~~~~r~~~~~~F~-----~g~ 393 (475)
.+..+++.+ ..++++||||+++++++.++..|.+ ++.+..+||+|++++|.++++.|. +|+
T Consensus 290 ~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~ 369 (773)
T 2xau_A 290 AIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG 369 (773)
T ss_dssp HHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc
Confidence 233333221 2478999999999999999999863 467899999999999999999999 999
Q ss_pred CcEEEEecccccCCCCCCCCEEEecCC------------------CCChhHHH--hhccCCCCCCCcEEEeeChhhh
Q 011908 394 FNILIATDVAARGLDVPNVDLVELVVL------------------ERKEVQFL--STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 394 ~~vLvaT~~l~~GiDip~~~~vI~~~~------------------~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
.+|||||+++++|+|+|++++||+++. |.+..+|+ +||+||. +.|.|+.++++++.
T Consensus 370 ~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 370 RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred eEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999999999999999877 66777777 6666666 67999999999877
No 49
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.6e-35 Score=295.31 Aligned_cols=267 Identities=14% Similarity=0.122 Sum_probs=184.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~ 214 (475)
+++++++++|||||||++|+++++..+.. .+.+++|++||++||.|+++.+. ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~--- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQS--- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT----TSCEEEC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccc---
Confidence 36789999999999999999999966543 26789999999999999998886 4555554443221
Q ss_pred HHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC-CCCCcEEEEeeecChhHHHH
Q 011908 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 215 ~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-~~~~~~l~~SAT~~~~~~~~ 293 (475)
.-..+..+.+.|.+.+.+.+.. ...+.+++++|+||+|++ +..+......+.... +.++++++||||+++.+..+
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred --cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1122356777898888877766 556899999999999996 322222323332221 46899999999998742211
Q ss_pred HHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeee
Q 011908 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEP 372 (475)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~ 372 (475)
... .+..... ............+ ..+.+ .++++||||+++++++.+++.|.+ ++.+..
T Consensus 142 ~~~---~~~i~~~---------------~~~~~~~~~~~~~-~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 142 PPS---NSPIIDE---------------ETRIPDKAWNSGY-EWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CCC---SSCCEEE---------------ECCCCSSCCSSCC-HHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCC---CCceeec---------------cccCCHHHHHHHH-HHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 100 0000110 0011111112222 23333 366999999999999999999964 688999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCE-----------------EEecCCCCChhHHH--hhccC
Q 011908 373 LHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDL-----------------VELVVLERKEVQFL--STQIS 433 (475)
Q Consensus 373 lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~-----------------vI~~~~~~~~~~~~--~gR~g 433 (475)
+||+ +|+++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+ +||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 655 56677888877777 77777
Q ss_pred CCCCCCcEEEeeC
Q 011908 434 RPGKSRVLSEMLD 446 (475)
Q Consensus 434 R~g~~~~~~~~~~ 446 (475)
|.|..+.|++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 7775444555554
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.5e-35 Score=308.62 Aligned_cols=313 Identities=18% Similarity=0.195 Sum_probs=189.8
Q ss_pred CCcHHHHHHhhhhhc----C-CcEEEEccCCCChhHHhHHHHHHHHHhhh-hccCCCCCceEEEEeCCHHhHHHHH-HHH
Q 011908 121 KLFPIQKAVLEPAMQ----G-RDMIGRARTGTGKTLAFGIPILDKIIKFN-EKHGRGRNPLCLVLAPTRELAKQVE-KEF 193 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~----~-~~~li~~~tGsGKT~~~~~~~l~~~~~~~-~~~~~~~~~~~lil~Pt~~La~Q~~-~~l 193 (475)
.|+++|.++++.+.. + ++++++++||||||++++..+. .+.... ...+...+.++||++||++|+.|++ +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~-~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISW-KLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH-HHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHH-HHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998875 4 5689999999999999755444 443321 1111124678999999999999999 777
Q ss_pred HHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh----CCCCCCCccEEEEeccccccccCcHHHHHHH
Q 011908 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR----NALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (475)
Q Consensus 194 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~----~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~i 269 (475)
+.+.. ....+.++ ....+.+|+|+||+++...... ..+....+++||+||||++...+ ...+..+
T Consensus 257 ~~~~~--~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~i 325 (590)
T 3h1t_A 257 TPFGD--ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREI 325 (590)
T ss_dssp TTTCS--SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHH
T ss_pred Hhcch--hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHH
Confidence 76643 22222222 1234579999999999876542 23456679999999999986542 3456777
Q ss_pred HHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecC-CcccccCCeEEEEEecc----------------------
Q 011908 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD-SDQKLADGISLYSIATS---------------------- 326 (475)
Q Consensus 270 l~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------------- 326 (475)
+..++ +.++++|||||..........++..+........ .............+...
T Consensus 326 l~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (590)
T 3h1t_A 326 LEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD 404 (590)
T ss_dssp HHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------------
T ss_pred HHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccc
Confidence 77774 5789999999885443333333333222110000 00000000000000000
Q ss_pred ----Cc---------chhh----HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHccC---------CeeeecCCCCHH
Q 011908 327 ----MY---------EKPS----IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSY---------NCEPLHGDISQS 380 (475)
Q Consensus 327 ----~~---------~k~~----~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~---------~~~~lh~~~~~~ 380 (475)
.. .+.. .+...++....++++||||+++++++.+++.|.+.. .+..+||.++ +
T Consensus 405 ~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~ 483 (590)
T 3h1t_A 405 GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-K 483 (590)
T ss_dssp ----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-H
T ss_pred ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-H
Confidence 00 0111 133334444556899999999999999999996421 2678899876 4
Q ss_pred HHHHHHHHHhcCCCc---EEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCC--CCcEEEeeCh
Q 011908 381 QRERTLSAFRDGRFN---ILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGK--SRVLSEMLDA 447 (475)
Q Consensus 381 ~r~~~~~~F~~g~~~---vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~--~~~~~~~~~~ 447 (475)
+|++++++|++|+.+ |||||+++++|+|+|++++||+++++.+...|+ +||+||.|. ++..+++++.
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 799999999998866 889999999999999999999999999999887 667776664 4444555543
No 51
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=8.7e-35 Score=268.13 Aligned_cols=213 Identities=36% Similarity=0.648 Sum_probs=191.6
Q ss_pred CCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCC
Q 011908 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 173 (475)
.+.+..+|+++++++.+.+.+.+.|+.+|+++|.++++.+.+++++++++|||||||++|+++++..+..... .....+
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~~ 102 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGDG 102 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-cccCCC
Confidence 4456678999999999999999999999999999999999999999999999999999999999998864321 122347
Q ss_pred ceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011908 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 174 ~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIi 251 (475)
++++|++||++|+.|+++.++++.. ++.+..++||.........+..+++|+|+||+++.+.+......+.+++++|+
T Consensus 103 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 103 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 7899999999999999999988754 67788889999888888888888999999999999999888888999999999
Q ss_pred eccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEee
Q 011908 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 307 (475)
||+|++.+++|...+..++..+++++|+++||||+++.+..+...++.+|..+.+.
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999988764
No 52
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.7e-35 Score=265.78 Aligned_cols=212 Identities=36% Similarity=0.552 Sum_probs=180.4
Q ss_pred CCccCCCccC-CCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCC
Q 011908 94 SKDEGLDISK-LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (475)
Q Consensus 94 ~~~~~~~~~~-~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~ 172 (475)
.+.+..+|++ +++++.+.+.+.+.|+.+|+++|.++++.+.+++++++++|||||||++|+++++..+...........
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 3445556777 789999999999999999999999999999999999999999999999999999988765333333345
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhC-CCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIi 251 (475)
+++++|++||++|+.|+++.+.++. .++.+..++|+.........+..+++|+|+||+++.+.+......+.+++++|+
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 7889999999999999999999975 377888888888877777777888999999999999999888888999999999
Q ss_pred eccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEE
Q 011908 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 305 (475)
||+|++.+++|...+..++..++++.|+++||||+++.+..+...++.+|..+.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999887764
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.2e-34 Score=291.19 Aligned_cols=270 Identities=16% Similarity=0.136 Sum_probs=189.1
Q ss_pred hhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCC
Q 011908 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209 (475)
Q Consensus 130 i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~ 209 (475)
...+.+++++++++|||||||++|+++++..+.. .+.+++|++||++||.|+++.+.. ..+....+..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g----~~v~~~~~~~ 82 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRG----LPVRYQTSAV 82 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTT----SCEEECC---
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcC----ceEeEEeccc
Confidence 4446677899999999999999999999988754 267899999999999999999873 3332211111
Q ss_pred ChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc-----cccCcHHHHHHHHHhCCCCCcEEEEee
Q 011908 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-----LSVGFAEDVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 210 ~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~-----~~~~~~~~~~~il~~~~~~~~~l~~SA 284 (475)
.. .-..+..+.+.|.+.+.+.+... ..++++++||+||+|++ ...++... .. ..++.|+++|||
T Consensus 83 ~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~----~~-~~~~~~~il~SA 151 (459)
T 2z83_A 83 QR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT----KV-ELGEAAAIFMTA 151 (459)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH----HH-HTTSCEEEEECS
T ss_pred cc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH----Hh-ccCCccEEEEEc
Confidence 10 01223467788888887766554 45789999999999984 22222111 11 136789999999
Q ss_pred ecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHH
Q 011908 285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM 364 (475)
Q Consensus 285 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l 364 (475)
|+++.+..+... ..|... +.. ......... +...+.+ .++++||||+++++++.+++.|
T Consensus 152 T~~~~~~~~~~~--~~pi~~-~~~---------------~~~~~~~~~-~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHD-LQD---------------EIPDRAWSS-GYEWITE--YAGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEE-EEC---------------CCCSSCCSS-CCHHHHH--CCSCEEEECSCHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEE-ecc---------------cCCcchhHH-HHHHHHh--cCCCEEEEeCChHHHHHHHHHH
Confidence 998753221110 111111 100 001111111 1222333 2679999999999999999999
Q ss_pred Hc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEe--------------------cCCCCC
Q 011908 365 AK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVEL--------------------VVLERK 423 (475)
Q Consensus 365 ~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~--------------------~~~~~~ 423 (475)
.. ++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.+
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 64 6899999995 6788999999999999999999999999999 99998 679999
Q ss_pred hhHHH--hhccCCCCC-CCcEEEeeChh
Q 011908 424 EVQFL--STQISRPGK-SRVLSEMLDAD 448 (475)
Q Consensus 424 ~~~~~--~gR~gR~g~-~~~~~~~~~~~ 448 (475)
..+|+ +||+||.|+ .|.|++++.+.
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99888 888888886 88999999875
No 54
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-33 Score=252.70 Aligned_cols=200 Identities=35% Similarity=0.578 Sum_probs=180.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
.+|+++++++.+++.+.+.|+.+|+++|.++++.+.+++++++++|||||||++|+++++..+.. ...+++++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~li 76 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQAMV 76 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc------cCCCeeEEE
Confidence 46889999999999999999999999999999999999999999999999999999999887632 134678999
Q ss_pred EeCCHHhHHHHHHHHHHhCC---CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccc
Q 011908 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (475)
Q Consensus 179 l~Pt~~La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H 255 (475)
++||++|+.|+++.+.++.. +..+..+.|+.........+..+++|+|+||+++.+.+.+....+.+++++|+||+|
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 99999999999999998865 567788888888777777777789999999999999998877788999999999999
Q ss_pred cccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEE
Q 011908 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (475)
Q Consensus 256 ~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 304 (475)
++.+.+|...+..++..++++.|+++||||+++.+..+...++.+|..+
T Consensus 157 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 157 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999889999999999998899999999999999999999999888654
No 55
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1e-33 Score=254.72 Aligned_cols=204 Identities=48% Similarity=0.834 Sum_probs=184.5
Q ss_pred CccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEE
Q 011908 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (475)
Q Consensus 100 ~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil 179 (475)
+|+++++++.+.+.+.+.++.+|+++|.++++.+.+++++++++|||||||++|+++++..+.... ....+++++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRALVL 78 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC---CTTCCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc---ccCCCCcEEEE
Confidence 478899999999999999999999999999999999999999999999999999999988874311 12346789999
Q ss_pred eCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011908 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 180 ~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~ 259 (475)
+||++|+.|+++.+.++++++++..++|+.........+..+++|+|+||+++.+.+......+.+++++|+||+|++.+
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 99999999999999999988888888998887777777777899999999999999988888889999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEe
Q 011908 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 260 ~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
+++...+..++..++++.|++++|||+++.+..+...++.+|..+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999989999999999999999999999999987754
No 56
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.5e-34 Score=311.02 Aligned_cols=317 Identities=14% Similarity=0.141 Sum_probs=218.2
Q ss_pred CCCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 120 SKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
.+|+++|.+++..+... .+++++++||+|||++++..+...+.. +...++||+||+ .|+.||.+++.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 57999999999988864 478999999999999997777666543 334579999999 99999999998887
Q ss_pred CCCceEEEEcCCChhHHHH--HhhCCCCEEEEccHHHHHHHHh-CCCCCCCccEEEEeccccccccCcH--HHHHHHHHh
Q 011908 198 PSLDTICVYGGTPISHQMR--ALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFA--EDVEVILER 272 (475)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~--~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~l~~vIiDE~H~~~~~~~~--~~~~~il~~ 272 (475)
++.+..+.++........ ......+|+|+|++.+...... ..+...++++||+||+|++.+.+.. .....+...
T Consensus 224 -~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 224 -NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp -CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred -CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 566666544332111111 1112379999999887532111 1123457899999999999754321 112222222
Q ss_pred CCCCCcEEEEeeecChh----HHHHHHHh----------------------------cCC--------------------
Q 011908 273 LPQNRQSMMFSATMPPW----IRSLTNKY----------------------------LKN-------------------- 300 (475)
Q Consensus 273 ~~~~~~~l~~SAT~~~~----~~~~~~~~----------------------------~~~-------------------- 300 (475)
....+++++|||||.++ +..+.... ...
T Consensus 303 ~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~ 382 (968)
T 3dmq_A 303 AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDI 382 (968)
T ss_dssp HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCS
T ss_pred hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhh
Confidence 23456799999998531 11111000 000
Q ss_pred --------------------------------CcEEEeecCCcccccC-CeEEEE-------------------------
Q 011908 301 --------------------------------PLTVDLVGDSDQKLAD-GISLYS------------------------- 322 (475)
Q Consensus 301 --------------------------------~~~~~~~~~~~~~~~~-~~~~~~------------------------- 322 (475)
...+..........+. ......
T Consensus 383 ~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (968)
T 3dmq_A 383 EPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAED 462 (968)
T ss_dssp STTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGG
T ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHH
Confidence 0000000000000000 000000
Q ss_pred --------------------EeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc--cCCeeeecCCCCHH
Q 011908 323 --------------------IATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQS 380 (475)
Q Consensus 323 --------------------~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~--~~~~~~lh~~~~~~ 380 (475)
.......|...+..+++. ..++++||||+++..++.++..|.. ++.+..+||+|++.
T Consensus 463 ~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 463 RARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 011223456677777776 3678999999999999999999974 78999999999999
Q ss_pred HHHHHHHHHhcCC--CcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeC
Q 011908 381 QRERTLSAFRDGR--FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLD 446 (475)
Q Consensus 381 ~r~~~~~~F~~g~--~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~ 446 (475)
+|.++++.|++|+ ++|||||+++++|+|+|++++||++++|+++..|. +||+||.|+.+.++++..
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 9999999999998 99999999999999999999999999999999988 999999999887665543
No 57
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6.7e-34 Score=258.17 Aligned_cols=202 Identities=34% Similarity=0.587 Sum_probs=179.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEE
Q 011908 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (475)
Q Consensus 99 ~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~li 178 (475)
.+|+++++++.+.+.+.+.|+.+|+++|.++++.+.+++++++++|||||||++|+++++..+.. ...+.+++|
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~li 77 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQAVI 77 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh------CcCCceEEE
Confidence 45888999999999999999999999999999999999999999999999999999999988643 123678999
Q ss_pred EeCCHHhHHHHHHHHHHhCC------CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEe
Q 011908 179 LAPTRELAKQVEKEFHESAP------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (475)
Q Consensus 179 l~Pt~~La~Q~~~~l~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiD 252 (475)
++||++|+.|+++.++++.. ++.+..+.|+.........+..+++|+|+||+++.+.+......+.+++++|+|
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999988765 456777788876655545555578999999999999998877778899999999
Q ss_pred ccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEe
Q 011908 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 253 E~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
|+|++.++++...+..++..+++++|++++|||+++.+..+...++.+|..+.+
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999999989999999999999999999999999988765
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=257.14 Aligned_cols=204 Identities=35% Similarity=0.587 Sum_probs=183.4
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceE
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 176 (475)
...+|+++++++.+.+.+.+.|+.+|+++|.++++.+.+++++++++|||||||++|+++++..+... ..+.++
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~ 114 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFA 114 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceE
Confidence 34568899999999999999999999999999999999999999999999999999999999887652 235689
Q ss_pred EEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh-CCCCCCCccEEEEec
Q 011908 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDE 253 (475)
Q Consensus 177 lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~l~~vIiDE 253 (475)
+|++||++|+.|+++.++++.. ++.+..++|+.....+...+..+++|+|+||+++.+.+.. ..+.+.+++++|+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999998765 5678888898887777777777899999999999998876 456788999999999
Q ss_pred cccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEe
Q 011908 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
+|++.+++|...+..++..++++.|+++||||+++.+..+...++.+|..+.+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999989999999999999999999999999987754
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.5e-33 Score=255.36 Aligned_cols=206 Identities=33% Similarity=0.516 Sum_probs=178.9
Q ss_pred CCccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCC
Q 011908 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (475)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 173 (475)
...+..+|+++++++.+.+.+.+.|+.+|+++|.++++.+.+++++++++|||||||++|+++++..+... ..+
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------~~~ 92 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------NLS 92 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------SCS
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCC
Confidence 34455679999999999999999999999999999999999999999999999999999999998876431 336
Q ss_pred ceEEEEeCCHHhHHHHHHHHHHhCC---CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 174 PLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 174 ~~~lil~Pt~~La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
.+++|++||++|+.|+++.++++.. ++.+..+.|+.........+ .+++|+|+||+++.+.+....+.+.+++++|
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEE
Confidence 7899999999999999999999864 67788888888766655544 4689999999999999988777788999999
Q ss_pred EeccccccccC-cHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEe
Q 011908 251 LDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 251 iDE~H~~~~~~-~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
+||+|++.+++ |...+..++..+++.+|++++|||+++.+..+...++.+|..+.+
T Consensus 172 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 172 LDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp ESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred eCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999887 999999999999989999999999999999999999988877643
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=253.39 Aligned_cols=209 Identities=31% Similarity=0.537 Sum_probs=181.1
Q ss_pred CccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCc
Q 011908 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 174 (475)
.....+|+++++++.+.+.|.+.++..|+++|.++++.+.+++++++++|||||||++|+++++..+..... ....++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGL 98 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCc
Confidence 345567999999999999999999999999999999999999999999999999999999999988765321 112367
Q ss_pred eEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC-CCCCCCccEEEE
Q 011908 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVL 251 (475)
Q Consensus 175 ~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~l~~vIi 251 (475)
+++|++||++|+.|+++.+++++. ++.+..++|+.........+ .+++|+|+||+++.+.+... ...+.+++++|+
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 899999999999999999999875 46777788887766555544 46899999999999888764 466789999999
Q ss_pred eccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEe
Q 011908 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
||+|++.+++|...+..++..+++.+|+++||||+++.+..+...++.+|..+.+
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999988765
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.8e-33 Score=257.09 Aligned_cols=205 Identities=33% Similarity=0.551 Sum_probs=173.0
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCce
Q 011908 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 175 (475)
....+|+++++++.+.+.+.+.|+..|+++|.++++.+++++++++++|||||||++|+++++..+.. ...+.+
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------~~~~~~ 100 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKETQ 100 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------TSCSCC
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCce
Confidence 44567999999999999999999999999999999999999999999999999999999999987632 124678
Q ss_pred EEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCC-CCEEEEccHHHHHHHHhCCCCCCCccEEEEe
Q 011908 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~-~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiD 252 (475)
++|++||++|+.|+++.++++.. ++.+..+.|+.........+..+ ++|+|+||+++.+.+.+....+.+++++|+|
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViD 180 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD 180 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEEC
Confidence 99999999999999999999875 45667777877766655555555 8999999999999998877788999999999
Q ss_pred ccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEe
Q 011908 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 253 E~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
|+|++.+++|...+..++..++...|++++|||+++.+..+...++.+|..+.+
T Consensus 181 Eah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 181 EADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999998887754
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=258.90 Aligned_cols=204 Identities=33% Similarity=0.536 Sum_probs=176.1
Q ss_pred CCCccCCC--CCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCce
Q 011908 98 GLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 98 ~~~~~~~~--l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 175 (475)
...|++++ +++.+++.+.+.|+.+|+++|.++++.+..++++++++|||||||++|+++++..+.+.... ...+.+
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~ 128 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTG 128 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCC
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCce
Confidence 34566666 99999999999999999999999999999999999999999999999999999988653211 123678
Q ss_pred EEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhC-CCCCCCccEEEEe
Q 011908 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLD 252 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~-~~~~~~l~~vIiD 252 (475)
++|++||++|+.|+++.+++++. +..+..++|+.........+..+++|+|+||+++.+.+... .+.+.+++++|+|
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 99999999999999999999876 45677788888877777777778999999999999888764 4678899999999
Q ss_pred ccccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcE
Q 011908 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT 303 (475)
Q Consensus 253 E~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~ 303 (475)
|+|++.+++|...+..++..+++.+|+++||||+++.+..+...++.++..
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 999999999999999999999999999999999999999999988876543
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.1e-32 Score=251.26 Aligned_cols=204 Identities=33% Similarity=0.556 Sum_probs=174.1
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCce
Q 011908 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 175 (475)
....+|+++++++.+.+.+.+.|+.+|+++|.++++.+.+++++++++|||||||++|+++++..+.. ...+++
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------~~~~~~ 84 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQ 84 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------cCCCce
Confidence 34457899999999999999999999999999999999999999999999999999999999987633 134678
Q ss_pred EEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011908 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 176 ~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE 253 (475)
++|++||++|+.|+++.+.++.. ++.+..+.|+.........+.. ++|+|+||+++.+.+.+....+.+++++|+||
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 99999999999999999999875 5667777787766555544444 89999999999999988888889999999999
Q ss_pred cccccccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEe
Q 011908 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 254 ~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
+|++.++++...+..++..++++.|+++||||+++.+..+...++.+|..+.+
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~ 216 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999988765
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.1e-32 Score=278.20 Aligned_cols=308 Identities=18% Similarity=0.196 Sum_probs=212.0
Q ss_pred CCCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
.+|+++|.++++.+. .+.+.++..+||+|||++++..+ ..+... +...++||+||+ .|+.||.+++.+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~------~~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKE------NELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHT------TCCSSEEEEECS-TTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHhc------CCCCCEEEEccH-HHHHHHHHHHHH
Confidence 379999999998763 46789999999999999875444 343321 234579999995 688999999999
Q ss_pred hCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCC
Q 011908 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~ 275 (475)
++++..+..+.|+... ......+|+|+|++.+..... +....+++||+||+|++.+.. ......+..+ +
T Consensus 108 ~~~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l-~ 176 (500)
T 1z63_A 108 FAPHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL-K 176 (500)
T ss_dssp HCTTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS-C
T ss_pred HCCCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh-c
Confidence 9988887776655421 112347999999998865433 223467899999999987653 2334455556 4
Q ss_pred CCcEEEEeeecChhH-HHH---H---------------------------------HHhcCCCcEEEeecCC---ccccc
Q 011908 276 NRQSMMFSATMPPWI-RSL---T---------------------------------NKYLKNPLTVDLVGDS---DQKLA 315 (475)
Q Consensus 276 ~~~~l~~SAT~~~~~-~~~---~---------------------------------~~~~~~~~~~~~~~~~---~~~~~ 315 (475)
..+.+++||||..+- .++ . ...+ .+..+.-.... ....+
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSC
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCC
Confidence 567899999985421 111 1 1111 12222110000 00011
Q ss_pred CCeEEEEEec---------------------------------------------------------cCcchhhHHHHHH
Q 011908 316 DGISLYSIAT---------------------------------------------------------SMYEKPSIIGQLI 338 (475)
Q Consensus 316 ~~~~~~~~~~---------------------------------------------------------~~~~k~~~l~~~~ 338 (475)
.... ..+.. ....|...+..++
T Consensus 256 ~~~~-~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 256 DKIE-TNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp SEEE-EEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCeE-EEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 1111 11111 1122334444555
Q ss_pred Hhh-cCCCcEEEEeCChHHHHHHHHHHHc--cCCeeeecCCCCHHHHHHHHHHHhcC-CCc-EEEEecccccCCCCCCCC
Q 011908 339 TEH-AKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDG-RFN-ILIATDVAARGLDVPNVD 413 (475)
Q Consensus 339 ~~~-~~~~~~lVf~~~~~~~~~l~~~l~~--~~~~~~lh~~~~~~~r~~~~~~F~~g-~~~-vLvaT~~l~~GiDip~~~ 413 (475)
++. ..+.+++|||++.+.++.+...|.. +..+..+||+++..+|.++++.|++| ..+ +|++|+++++|+|+|+++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 543 4678999999999999999999964 68899999999999999999999998 454 899999999999999999
Q ss_pred EEEecCCCCChhHHH--hhccCCCCCCCcE--EEeeChh
Q 011908 414 LVELVVLERKEVQFL--STQISRPGKSRVL--SEMLDAD 448 (475)
Q Consensus 414 ~vI~~~~~~~~~~~~--~gR~gR~g~~~~~--~~~~~~~ 448 (475)
+||++++|+++..+. +||++|.|+.+.+ +.++..+
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999888 8999999987755 4455544
No 65
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=6.8e-33 Score=257.35 Aligned_cols=210 Identities=36% Similarity=0.603 Sum_probs=183.5
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhc---cCCCCC
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRN 173 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~---~~~~~~ 173 (475)
+..+|+++++++.+.+.|.+.|+.+|+++|.++++.+++++++++++|||||||++|+++++..+...... .....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 44568999999999999999999999999999999999999999999999999999999999988653211 112335
Q ss_pred ceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011908 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 174 ~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIi 251 (475)
++++|++||++|+.|+++.++++.. ++.+..+.|+.....+...+..+++|+|+||+++.+.+......+++++++|+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 7899999999999999999998765 46677788888877777777788999999999999999888888899999999
Q ss_pred eccccccccCcHHHHHHHHHhC--CC--CCcEEEEeeecChhHHHHHHHhcCCCcEEEe
Q 011908 252 DEADQMLSVGFAEDVEVILERL--PQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 252 DE~H~~~~~~~~~~~~~il~~~--~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
||+|++.+++|+..+..++..+ +. +.|+++||||+++.+..+...++.+|..+.+
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999999853 43 6799999999999999999999999888865
No 66
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.5e-32 Score=281.83 Aligned_cols=270 Identities=15% Similarity=0.125 Sum_probs=193.9
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhH
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~ 213 (475)
+++++++++||||||||+. ++..+.. ...++|++||++||.|+++.+.+. ++.+..++|+.....
T Consensus 153 l~rk~vlv~apTGSGKT~~----al~~l~~---------~~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~iv 217 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYH----AIQKYFS---------AKSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERVTV 217 (677)
T ss_dssp SCCEEEEEECCTTSSHHHH----HHHHHHH---------SSSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEECC
T ss_pred cCCCEEEEEcCCCCCHHHH----HHHHHHh---------cCCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeEEe
Confidence 4667899999999999983 3334433 233699999999999999999987 677788888765310
Q ss_pred HHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCC-CCCcEEEEeeecChhHHH
Q 011908 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRS 292 (475)
Q Consensus 214 ~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~-~~~~~l~~SAT~~~~~~~ 292 (475)
.......+++++|++.+. ....++++|+||+|++.+.+++..+..++..++ ...+++++|||. +.+..
T Consensus 218 --~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~ 286 (677)
T 3rc3_A 218 --QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVME 286 (677)
T ss_dssp --STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHH
T ss_pred --cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHH
Confidence 000112688899975442 246789999999999999999999999998887 678999999995 33444
Q ss_pred HHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCee
Q 011908 293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCE 371 (475)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~ 371 (475)
+.... .....+...... . ... ..... .. .+... ..+.+|||+++++++.+++.|.+ ++.+.
T Consensus 287 l~~~~-~~~~~v~~~~r~-----~--~l~-~~~~~---l~----~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~~v~ 348 (677)
T 3rc3_A 287 LMYTT-GEEVEVRDYKRL-----T--PIS-VLDHA---LE----SLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGLESA 348 (677)
T ss_dssp HHHHH-TCCEEEEECCCS-----S--CEE-ECSSC---CC----SGGGC--CTTEEEECSSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHhc-CCceEEEEeeec-----c--hHH-HHHHH---HH----HHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCCCee
Confidence 44333 233333211100 0 000 00000 00 11112 33458899999999999999964 68999
Q ss_pred eecCCCCHHHHHHHHHHHhc--CCCcEEEEecccccCCCCCCCCEEEecCC--------------CCChhHHH--hhccC
Q 011908 372 PLHGDISQSQRERTLSAFRD--GRFNILIATDVAARGLDVPNVDLVELVVL--------------ERKEVQFL--STQIS 433 (475)
Q Consensus 372 ~lh~~~~~~~r~~~~~~F~~--g~~~vLvaT~~l~~GiDip~~~~vI~~~~--------------~~~~~~~~--~gR~g 433 (475)
.+||+|++++|.++++.|++ |+.+|||||+++++|+|+ ++++||+++. |.+...|+ +||+|
T Consensus 349 ~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAG 427 (677)
T 3rc3_A 349 VIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAG 427 (677)
T ss_dssp EECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBT
T ss_pred eeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCC
Confidence 99999999999999999999 889999999999999999 9999999999 44566666 67777
Q ss_pred CCCCC---CcEEEeeChh
Q 011908 434 RPGKS---RVLSEMLDAD 448 (475)
Q Consensus 434 R~g~~---~~~~~~~~~~ 448 (475)
|.|+. |.|+.++..+
T Consensus 428 R~g~~g~~G~v~~l~~~d 445 (677)
T 3rc3_A 428 RFSSRFKEGEVTTMNHED 445 (677)
T ss_dssp CTTSSCSSEEEEESSTTH
T ss_pred CCCCCCCCEEEEEEecch
Confidence 77653 5666665544
No 67
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=260.44 Aligned_cols=201 Identities=27% Similarity=0.448 Sum_probs=176.1
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCc
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 174 (475)
...+|+++++++.+++.|.+.|+..||++|.++++.++.+ +++++++|||||||++|+++++..+.. ...++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------~~~~~ 163 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYP 163 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc------cCCCc
Confidence 3467999999999999999999999999999999999987 899999999999999999999988743 23467
Q ss_pred eEEEEeCCHHhHHHHHHHHHHhCC---CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHh-CCCCCCCccEEE
Q 011908 175 LCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (475)
Q Consensus 175 ~~lil~Pt~~La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~-~~~~~~~l~~vI 250 (475)
+++|++||++||.|+++.+..+.. ++.+..+.|+....... ..+++|+||||++|.+++.+ ..+.+++++++|
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 899999999999999999988764 56777777776543321 34589999999999999866 556788999999
Q ss_pred Eeccccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEEe
Q 011908 251 LDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (475)
Q Consensus 251 iDE~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 306 (475)
+||+|++.+ .+|...+..++..+++++|++++|||+++.+..++..++.+|..+.+
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 999999997 68999999999999999999999999999999999999999998876
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.8e-32 Score=246.88 Aligned_cols=202 Identities=29% Similarity=0.510 Sum_probs=176.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEE
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~l 177 (475)
..+|+++++++.+.+.+.+.++.+|+++|.++++.+.+++++++++|||+|||++|+++++..+.. ...+.+++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~l 86 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVL 86 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEE
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEEE
Confidence 346889999999999999999999999999999999999999999999999999999999887632 12356899
Q ss_pred EEeCCHHhHHHHHHHHHHhCC---CCceEEEEcCCChhHHHHHhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEEEec
Q 011908 178 VLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (475)
Q Consensus 178 il~Pt~~La~Q~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE 253 (475)
|++||++|+.|+++.++++.. ++.+..+.|+.........+.. .++|+|+||+++.+.+......+.+++++|+||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 87 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 999999999999999998864 6778888888876666555554 479999999999999988878889999999999
Q ss_pred cccccc-cCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCCcEEE
Q 011908 254 ADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (475)
Q Consensus 254 ~H~~~~-~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 305 (475)
+|++.+ .++...+..++..+++++|++++|||+++.+..+...++.+|..+.
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999986 4688888899999988999999999999999999999999887764
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=245.16 Aligned_cols=209 Identities=27% Similarity=0.454 Sum_probs=170.3
Q ss_pred CccCCCccCC----CCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCC
Q 011908 95 KDEGLDISKL----DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (475)
Q Consensus 95 ~~~~~~~~~~----~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~ 170 (475)
+.+..+|+++ ++++.+.+.+.+.|+..|+++|.++++.+.+++++++++|||||||++|+++++..+.. ..
T Consensus 21 p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-----~~ 95 (245)
T 3dkp_A 21 PDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-----PA 95 (245)
T ss_dssp CCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS-----CC
T ss_pred CCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh-----cc
Confidence 3444566665 89999999999999999999999999999999999999999999999999999988743 11
Q ss_pred CCCceEEEEeCCHHhHHHHHHHHHHhCC--CCceEEEEcCCChhHHH-HHhhCCCCEEEEccHHHHHHHHhC--CCCCCC
Q 011908 171 GRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM-RALDYGVDAVVGTPGRVIDLIKRN--ALNLSE 245 (475)
Q Consensus 171 ~~~~~~lil~Pt~~La~Q~~~~l~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~Ilv~T~~~l~~~l~~~--~~~~~~ 245 (475)
..+++++|++||++|+.|+++.+++++. ++.+..+.|+....... .....+++|+|+||+++.+.+... ...+.+
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 3467899999999999999999999876 34444444433222111 112345899999999999998776 467889
Q ss_pred ccEEEEeccccccc---cCcHHHHHHHHHhC-CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeec
Q 011908 246 VQFVVLDEADQMLS---VGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (475)
Q Consensus 246 l~~vIiDE~H~~~~---~~~~~~~~~il~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 308 (475)
++++|+||+|++.+ .+|...+..++..+ +.+.|+++||||+++.+..+...++.+|..+.+..
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999987 46888888888776 45789999999999999999999999999887643
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=7.9e-30 Score=274.89 Aligned_cols=312 Identities=15% Similarity=0.119 Sum_probs=204.4
Q ss_pred CCCcHHHHHHhhhhhc--------------CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 120 SKLFPIQKAVLEPAMQ--------------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~--------------~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
..|+++|.++++.++. +++.+++++||||||+++ ++++..+.. .+...++||+||+++|
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL 342 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDL 342 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHH
Confidence 3599999999998865 257999999999999997 555544421 1224689999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhh-CCCCEEEEccHHHHHHHHhCC--CCCCCccEEEEeccccccccCc
Q 011908 186 AKQVEKEFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGF 262 (475)
Q Consensus 186 a~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~--~~~~~l~~vIiDE~H~~~~~~~ 262 (475)
+.|+.+.+..+.++. +.++.+.......+. .+.+|+|+|++++...+.... ..+....+||+||||++. +
T Consensus 343 ~~Q~~~~f~~f~~~~----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~---~ 415 (1038)
T 2w00_A 343 DYQTMKEYQRFSPDS----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ---F 415 (1038)
T ss_dssp CHHHHHHHHTTSTTC----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH---H
T ss_pred HHHHHHHHHHhcccc----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc---c
Confidence 999999999887531 224444444444443 458999999999998876532 135578899999999964 3
Q ss_pred HHHHHHHHHhCCCCCcEEEEeeecChhHH----HHHHHhcCCCcEEEeecC-CcccccCCeEEEEEe-------------
Q 011908 263 AEDVEVILERLPQNRQSMMFSATMPPWIR----SLTNKYLKNPLTVDLVGD-SDQKLADGISLYSIA------------- 324 (475)
Q Consensus 263 ~~~~~~il~~~~~~~~~l~~SAT~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------- 324 (475)
+.....+...++ +.++++|||||..... .....+++.+........ ........+...+..
T Consensus 416 ~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 416 GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCC
T ss_pred hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccccc
Confidence 344566777774 5789999999975321 011122222111100000 000000000000000
Q ss_pred ------------ccCcchh-hHHHHHHHhh----------cCCCcEEEEeCChHHHHHHHHHHHcc-------------C
Q 011908 325 ------------TSMYEKP-SIIGQLITEH----------AKGGKCIVFTQTKRDADRLAHAMAKS-------------Y 368 (475)
Q Consensus 325 ------------~~~~~k~-~~l~~~~~~~----------~~~~~~lVf~~~~~~~~~l~~~l~~~-------------~ 368 (475)
.....+. .++..+++.. ..+.+++|||++++.|..+++.|.+. +
T Consensus 495 ~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~ 574 (1038)
T 2w00_A 495 EKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPL 574 (1038)
T ss_dssp HHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccC
Confidence 0000111 2233333321 13468999999999999999988531 3
Q ss_pred Cee-eecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEEE
Q 011908 369 NCE-PLHGD----------I----------SQ-----------------------------SQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 369 ~~~-~lh~~----------~----------~~-----------------------------~~r~~~~~~F~~g~~~vLv 398 (475)
++. ++||. + ++ .+|..++++|++|+++|||
T Consensus 575 k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILI 654 (1038)
T 2w00_A 575 RIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLI 654 (1038)
T ss_dssp CEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEE
T ss_pred cEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 454 45542 2 22 1478899999999999999
Q ss_pred EecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCC----CcEEEeeCh
Q 011908 399 ATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKS----RVLSEMLDA 447 (475)
Q Consensus 399 aT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~----~~~~~~~~~ 447 (475)
+|+++.+|+|+|.+ +++.+|.|.++..++ +||++|.+++ |..+.++..
T Consensus 655 vvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 655 VVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp ESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred EcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 99999999999999 677889999988887 7888887764 556666553
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=6.6e-29 Score=250.47 Aligned_cols=312 Identities=18% Similarity=0.107 Sum_probs=223.3
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|. .+++.|.-..-.+..|+ +.++.||+|||+++.+|++-..+. |..+.|++|+..||.|-++++..++
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 54 68889987777777654 999999999999999998855544 7789999999999999888877765
Q ss_pred C--CCceEEEEcC--------------------------------------------------CChhHHHHHhhCCCCEE
Q 011908 198 P--SLDTICVYGG--------------------------------------------------TPISHQMRALDYGVDAV 225 (475)
Q Consensus 198 ~--~~~~~~~~g~--------------------------------------------------~~~~~~~~~~~~~~~Il 225 (475)
. |+.+.+++.. .+..++...+ .++|.
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCE
Confidence 4 7888888772 2222223333 27999
Q ss_pred EEccHHHH-HHHHhC------CCCCCCccEEEEecccccccc-------------C---cHHHHHHHHHhC---------
Q 011908 226 VGTPGRVI-DLIKRN------ALNLSEVQFVVLDEADQMLSV-------------G---FAEDVEVILERL--------- 273 (475)
Q Consensus 226 v~T~~~l~-~~l~~~------~~~~~~l~~vIiDE~H~~~~~-------------~---~~~~~~~il~~~--------- 273 (475)
+||...+- ++|..+ ......+.++||||+|.++-. . ....+..+...+
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 99998873 555432 222456889999999975311 0 000001110000
Q ss_pred --------------------------------------------------------------------------------
Q 011908 274 -------------------------------------------------------------------------------- 273 (475)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (475)
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence
Q ss_pred ----------------------------CCCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEE-EEEe
Q 011908 274 ----------------------------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL-YSIA 324 (475)
Q Consensus 274 ----------------------------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 324 (475)
....++.+||+|.......+...|. ...+.+..... ...... ..+.
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~--l~vv~IPtnkp---~~R~d~~d~vy 453 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG--MEVVVIPTHKP---MIRKDHDDLVF 453 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC--CCEEECCCSSC---CCCEECCCEEE
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC--CeEEEECCCCC---cceeecCcEEE
Confidence 0013689999999887766665553 33444322211 112222 2234
Q ss_pred ccCcchhhHHHHHHHh-hcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 011908 325 TSMYEKPSIIGQLITE-HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV 402 (475)
Q Consensus 325 ~~~~~k~~~l~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~ 402 (475)
.+..+|...+...+.+ ...+.++||||+|++.++.++..|.+ ++++..+||++...++..+...|+.| .|+|||++
T Consensus 454 ~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdm 531 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNM 531 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETT
T ss_pred ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcch
Confidence 4556677776666654 34678999999999999999999964 79999999996655655555566555 69999999
Q ss_pred cccCCCCC--------CCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhh
Q 011908 403 AARGLDVP--------NVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 403 l~~GiDip--------~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
+++|+||+ +..+||+++.|.+...|. +||+||.|++|.+++|++.+|.
T Consensus 532 AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 532 AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99999998 667999999999999998 9999999999999999998774
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.5e-28 Score=256.87 Aligned_cols=320 Identities=13% Similarity=0.162 Sum_probs=211.9
Q ss_pred CCcHHHHHHhhhhh---------cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHH
Q 011908 121 KLFPIQKAVLEPAM---------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~---------~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 191 (475)
.|+|||.+++..+. .+...++..+||+|||++++..+...+..... .......+||++|+ .|..||.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~--~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD--CKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT--SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc--ccCCCCcEEEEecH-HHHHHHHH
Confidence 69999999998874 34568999999999999886555544332111 11123468999996 88899999
Q ss_pred HHHHhCCC-CceEEEEcCCChhHHH--HHh-h-----CCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCc
Q 011908 192 EFHESAPS-LDTICVYGGTPISHQM--RAL-D-----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (475)
Q Consensus 192 ~l~~~~~~-~~~~~~~g~~~~~~~~--~~~-~-----~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~ 262 (475)
++.++++. +.+..+.+|....... ... . ...+|+|+|++.+.... ..+....+++||+||+|++.+..
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh-
Confidence 99999764 5555555654322211 111 1 13689999999886543 23334568899999999987653
Q ss_pred HHHHHHHHHhCCCCCcEEEEeeecChhH----HH---------------HHHHhc-------------------------
Q 011908 263 AEDVEVILERLPQNRQSMMFSATMPPWI----RS---------------LTNKYL------------------------- 298 (475)
Q Consensus 263 ~~~~~~il~~~~~~~~~l~~SAT~~~~~----~~---------------~~~~~~------------------------- 298 (475)
. .....+..+ ...+.+++||||..+- .. +...|.
T Consensus 209 ~-~~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 N-QTYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp H-HHHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred h-HHHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2 223334444 4567999999985421 00 000000
Q ss_pred ----CCCcEEEee-cCCcccccCCeEEEE---------------------------------------------------
Q 011908 299 ----KNPLTVDLV-GDSDQKLADGISLYS--------------------------------------------------- 322 (475)
Q Consensus 299 ----~~~~~~~~~-~~~~~~~~~~~~~~~--------------------------------------------------- 322 (475)
-.+..+.-. .......+.......
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 000000000 000000000000000
Q ss_pred --------------------------EeccCcchhhHHHHHHHhh--cCCCcEEEEeCChHHHHHHHHHHH-ccCCeeee
Q 011908 323 --------------------------IATSMYEKPSIIGQLITEH--AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPL 373 (475)
Q Consensus 323 --------------------------~~~~~~~k~~~l~~~~~~~--~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~l 373 (475)
.......|...+..++... ..+.++||||+....++.+...|. .++.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 0001123444555555543 247899999999999999999995 47899999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCc---EEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcE--EEeeC
Q 011908 374 HGDISQSQRERTLSAFRDGRFN---ILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVL--SEMLD 446 (475)
Q Consensus 374 h~~~~~~~r~~~~~~F~~g~~~---vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~--~~~~~ 446 (475)
||+++..+|.+++++|++|... +|++|++.++|+|++++++||++|+++++..+. +||++|.|+...+ +.++.
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 9999999999999999998754 899999999999999999999999999999888 8899998877644 44555
Q ss_pred hh
Q 011908 447 AD 448 (475)
Q Consensus 447 ~~ 448 (475)
.+
T Consensus 527 ~~ 528 (644)
T 1z3i_X 527 TG 528 (644)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-29 Score=267.22 Aligned_cols=318 Identities=19% Similarity=0.253 Sum_probs=220.5
Q ss_pred CCCcHHHHHHhhhhh----cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~----~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
.+|++||.+++..+. .+.+.++..+||+|||++++..+...+... .....+||+|| ..|..||.+++.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHH
Confidence 379999999998765 678899999999999998755554443221 22445899999 7788999999999
Q ss_pred hCCCCceEEEEcCCChhHHHHHh------------hCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcH
Q 011908 196 SAPSLDTICVYGGTPISHQMRAL------------DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (475)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~~------------~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~ 263 (475)
+++++.+.++.|+.......... ....+|+|+|++.+...... +....+++||+||+|++.+..
T Consensus 308 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~-- 383 (800)
T 3mwy_W 308 WAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE-- 383 (800)
T ss_dssp HSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--
T ss_pred HCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--
Confidence 99999988877766544433221 12478999999998654322 112357899999999986542
Q ss_pred HHHHHHHHhCCCCCcEEEEeeecChh----HHHHHHHhcCC-----------------------------CcEEEeec-C
Q 011908 264 EDVEVILERLPQNRQSMMFSATMPPW----IRSLTNKYLKN-----------------------------PLTVDLVG-D 309 (475)
Q Consensus 264 ~~~~~il~~~~~~~~~l~~SAT~~~~----~~~~~~~~~~~-----------------------------~~~~~~~~-~ 309 (475)
......+..+ ...+.+++||||..+ +..++...... |..+.-.. +
T Consensus 384 s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 2334445555 455689999998421 22222211111 11111000 0
Q ss_pred CcccccCCeEEEEEec----------------------------------------------------------------
Q 011908 310 SDQKLADGISLYSIAT---------------------------------------------------------------- 325 (475)
Q Consensus 310 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 325 (475)
.....+.... ..+..
T Consensus 463 v~~~LP~k~~-~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 541 (800)
T 3mwy_W 463 VEKSLPSKTE-RILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGK 541 (800)
T ss_dssp GTTTSCCEEE-EEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----
T ss_pred hhhccCCcEE-EEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccc
Confidence 0000000000 00000
Q ss_pred -----------cCcchhhHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcC
Q 011908 326 -----------SMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 392 (475)
Q Consensus 326 -----------~~~~k~~~l~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g 392 (475)
....|...+..++..+ ..+.++||||.....++.+...|. .++.+..+||+++..+|.++++.|++|
T Consensus 542 ~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 542 MTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred ccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 0123455566666654 357799999999999999999995 578999999999999999999999986
Q ss_pred CC---cEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcE--EEeeChhhh
Q 011908 393 RF---NILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVL--SEMLDADLL 450 (475)
Q Consensus 393 ~~---~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~--~~~~~~~~~ 450 (475)
.. .+|++|.++++|+|++.+++||++|+++++..+. +||++|.|+...+ +.++..+..
T Consensus 622 ~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 622 DSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp TCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred CCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 54 4999999999999999999999999999999888 8888888876544 555655433
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=1.8e-25 Score=229.60 Aligned_cols=128 Identities=21% Similarity=0.291 Sum_probs=108.3
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
.|+ .|+++|..+++.+++|+ +.++.||+|||++|.+|++...+. |.+++||+||++||.|+++.+..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 577 89999999999999987 999999999999999999755533 678999999999999999998887
Q ss_pred CC--CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHH-HHHHHhCC------CCCC---CccEEEEecccccc
Q 011908 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLS---EVQFVVLDEADQML 258 (475)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~l~~~~------~~~~---~l~~vIiDE~H~~~ 258 (475)
+. ++.+.+++||.+...+... .+++|+||||+.| .+++.... +.++ +++++|+||+|+++
T Consensus 144 ~~~lGLsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 54 7888889999885444333 3589999999999 78876652 4577 89999999999976
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=4e-25 Score=230.66 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=120.7
Q ss_pred CCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChH
Q 011908 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKR 355 (475)
Q Consensus 276 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~ 355 (475)
..|++++|||+++..... ....+...... .... .+...+.........++..+.+....+.++||||+++.
T Consensus 380 ~~q~i~~SAT~~~~~~~~------~~~~~~~~~r~-~~l~--~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH------SGRVVEQIIRP-TGLL--DPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp CSEEEEEESSCCHHHHHH------CSEEEEECSCT-TCCC--CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred cCCEEEEecCCCHHHHHh------hhCeeeeeecc-CCCC--CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 578999999988643211 01112211111 0011 11122222222233344555444556889999999999
Q ss_pred HHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCC-----CCChhHHH-
Q 011908 356 DADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVL-----ERKEVQFL- 428 (475)
Q Consensus 356 ~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~-----~~~~~~~~- 428 (475)
.++.+++.|.+ ++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++. |.+...|+
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 99999999964 688999999999999999999999999999999999999999999999999998 77777887
Q ss_pred -hhccCCCCCCCcEEEeeChhhh
Q 011908 429 -STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 429 -~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
+||+||.| .|.+++++++.+.
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCH
T ss_pred HHCccCcCC-CCEEEEEEcCCCH
Confidence 77777774 6899999987654
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=1.5e-24 Score=226.33 Aligned_cols=166 Identities=19% Similarity=0.277 Sum_probs=121.9
Q ss_pred CCCcEEEEeeecChhHHHHHHHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCCh
Q 011908 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTK 354 (475)
Q Consensus 275 ~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~ 354 (475)
...|++++|||+++..... .... +...... .... .+...+.........++..+.+....+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~--~~~~~r~-~~l~--~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEM--VEQIIRP-TGLL--DPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSC--EEECCCT-TCCC--CCEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCe--eeeeecc-cCCC--CCeEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 3578999999987643221 0111 1111110 0001 1112222222233444455555555678999999999
Q ss_pred HHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCC-----CCChhHHH
Q 011908 355 RDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVL-----ERKEVQFL 428 (475)
Q Consensus 355 ~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~-----~~~~~~~~ 428 (475)
..++.+++.|.+ ++++..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++. |.+...|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 999999999965 688999999999999999999999999999999999999999999999999998 77888887
Q ss_pred --hhccCCCCCCCcEEEeeChhhh
Q 011908 429 --STQISRPGKSRVLSEMLDADLL 450 (475)
Q Consensus 429 --~gR~gR~g~~~~~~~~~~~~~~ 450 (475)
+||+||. +.|.|++++++.+.
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITK 558 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCH
Confidence 7777776 57999999987654
No 77
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=5.2e-24 Score=192.39 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=119.4
Q ss_pred CCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHH-HHHHHHH
Q 011908 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ-VEKEFHE 195 (475)
Q Consensus 117 ~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q-~~~~l~~ 195 (475)
....+|+++|.++++.+..++++++.+|||+|||++++.+++..+...... ..+.+++|++|+++|+.| +.+.+.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999988776543211 236679999999999999 7788888
Q ss_pred hCC-CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCC------CCCCCccEEEEeccccccccCcHHHHH-
Q 011908 196 SAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA------LNLSEVQFVVLDEADQMLSVGFAEDVE- 267 (475)
Q Consensus 196 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~------~~~~~l~~vIiDE~H~~~~~~~~~~~~- 267 (475)
+.. ++.+..+.|+............+++|+|+||+.+...+.... ..+.+++++|+||+|++.+.++...+.
T Consensus 106 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 106 FLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred HhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 765 567777777765544444444458999999999998887643 557789999999999998765544442
Q ss_pred HHHHhC-------------CCCCcEEEEeee
Q 011908 268 VILERL-------------PQNRQSMMFSAT 285 (475)
Q Consensus 268 ~il~~~-------------~~~~~~l~~SAT 285 (475)
.++... .+.+++++||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 322211 157899999998
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.90 E-value=9.5e-23 Score=175.34 Aligned_cols=136 Identities=26% Similarity=0.450 Sum_probs=124.3
Q ss_pred CCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCC
Q 011908 316 DGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRF 394 (475)
Q Consensus 316 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~ 394 (475)
..+.+.++..+..+|...+..+++.. .++++||||++++.++.+++.|.. ++.+..+||+|++.+|..+++.|++|+.
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred ccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 34667777778888999999998876 567999999999999999999954 6899999999999999999999999999
Q ss_pred cEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhh
Q 011908 395 NILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 395 ~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~ 452 (475)
+|||||+++++|+|+|++++||++++|.+...|+ .||+||.|+.|.+++++++.+...
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 146 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRF 146 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHH
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHH
Confidence 9999999999999999999999999999999998 899999999999999999988764
No 79
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.89 E-value=6.1e-23 Score=180.09 Aligned_cols=141 Identities=30% Similarity=0.454 Sum_probs=113.9
Q ss_pred cCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCC
Q 011908 315 ADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393 (475)
Q Consensus 315 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~ 393 (475)
...+.+.++..+..+|...+..+++....++++||||+++..++.++..|.. ++.+..+||+|++.+|.++++.|++|+
T Consensus 17 ~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC
Confidence 4456777777888889999999998876788999999999999999999954 689999999999999999999999999
Q ss_pred CcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCC
Q 011908 394 FNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGS 455 (475)
Q Consensus 394 ~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~ 455 (475)
.+|||||+++++|+|+|++++||++++|++...|+ +||+||.|+.|.|++++++.+...+..
T Consensus 97 ~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 160 (185)
T 2jgn_A 97 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 160 (185)
T ss_dssp SSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHH
T ss_pred CeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHH
Confidence 99999999999999999999999999999999998 899999999999999999988765444
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.89 E-value=1.2e-22 Score=176.14 Aligned_cols=132 Identities=18% Similarity=0.306 Sum_probs=121.8
Q ss_pred CeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCc
Q 011908 317 GISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (475)
Q Consensus 317 ~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~ 395 (475)
.+.++++..+..+|...+..+++.. .++++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+.+
T Consensus 5 ~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 4567777778888999999999876 567999999999999999999954 68999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhh
Q 011908 396 ILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADL 449 (475)
Q Consensus 396 vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~ 449 (475)
|||||+++++|+|+|++++||++++|++...|+ +||+||.|+.|.+++++++.+
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 999999999999999999999999999999998 999999999999999998754
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.89 E-value=2.1e-22 Score=173.66 Aligned_cols=134 Identities=23% Similarity=0.392 Sum_probs=115.5
Q ss_pred eEEEEEeccCcc-hhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCc
Q 011908 318 ISLYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (475)
Q Consensus 318 ~~~~~~~~~~~~-k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~ 395 (475)
+.++++..+..+ |...+..+++.. .++++||||++++.++.++..|.. ++.+..+||+|++.+|.++++.|++|+.+
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred cEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 345555555555 899999998876 567999999999999999999964 68999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhh
Q 011908 396 ILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 396 vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~ 452 (475)
|||||+++++|+|+|++++||+++.|.+...|+ +||+||.|+.|.|++++++++...
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 141 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 141 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHH
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHH
Confidence 999999999999999999999999999999998 788888888899999999887763
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=3.3e-22 Score=179.52 Aligned_cols=131 Identities=31% Similarity=0.513 Sum_probs=118.5
Q ss_pred EEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011908 320 LYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 320 ~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLv 398 (475)
...+......|...+..+++.. .++++||||+++++++.++..|. .++.+..+||+|++.+|.++++.|++|+.+|||
T Consensus 8 ~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 8 EEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 3455667788999999999876 47899999999999999999995 478999999999999999999999999999999
Q ss_pred EecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 399 ATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 399 aT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
||+++++|+|+|++++||+++.|.+...|+ +||+||.|+.|.|++++++.+..
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~ 141 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 141 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHH
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHH
Confidence 999999999999999999999999999998 89999999999999999998765
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.6e-22 Score=174.79 Aligned_cols=136 Identities=29% Similarity=0.433 Sum_probs=117.7
Q ss_pred CCeEEEEEeccCcc-hhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCC
Q 011908 316 DGISLYSIATSMYE-KPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 393 (475)
Q Consensus 316 ~~~~~~~~~~~~~~-k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~ 393 (475)
..+.++++..+..+ |...+..+++.. .++++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 44666677666554 888898888776 567999999999999999999964 688999999999999999999999999
Q ss_pred CcEEEEecccccCCCCCCCCEEEecCCC------CChhHHH--hhccCCCCCCCcEEEeeChhhhhh
Q 011908 394 FNILIATDVAARGLDVPNVDLVELVVLE------RKEVQFL--STQISRPGKSRVLSEMLDADLLSS 452 (475)
Q Consensus 394 ~~vLvaT~~l~~GiDip~~~~vI~~~~~------~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~ 452 (475)
.+|||||+++++|+|+|++++||+++.| .+...|+ +||+||.|+.|.+++++++++...
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 151 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPS 151 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHH
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHH
Confidence 9999999999999999999999999999 7888888 888888888999999999988764
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=178.90 Aligned_cols=150 Identities=17% Similarity=0.269 Sum_probs=116.8
Q ss_pred HHhcCCCcEEEeecCCcccccCCeEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeee
Q 011908 295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPL 373 (475)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~l 373 (475)
..|+.+|..+.+... ......+.+.+...+..+|...+..++... ++++||||++++.++.+++.|. .++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSM--GAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp ---------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCC--CCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 346667776665322 233455667777777788888888888764 5689999999999999999995 47899999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChh
Q 011908 374 HGDISQSQRERTLSAFRDGRFNILIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDAD 448 (475)
Q Consensus 374 h~~~~~~~r~~~~~~F~~g~~~vLvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~ 448 (475)
||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+ +||+||.|+.|.+++++++.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999999998 89999999999999999976
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=9.7e-22 Score=184.72 Aligned_cols=133 Identities=29% Similarity=0.500 Sum_probs=118.4
Q ss_pred eEEEEEeccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcE
Q 011908 318 ISLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (475)
Q Consensus 318 ~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~v 396 (475)
+.++++.....+|...+..+++... ++++||||+++++++.++..|. .++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4566777888899999999998774 7899999999999999999995 4789999999999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhh
Q 011908 397 LIATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLS 451 (475)
Q Consensus 397 LvaT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~ 451 (475)
||||+++++|+|+|++++||+++.|.+...|+ +||+||.|+.|.|++++++.+..
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~ 138 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 138 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHH
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHH
Confidence 99999999999999999999999999999998 89999999999999999998764
No 86
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=177.38 Aligned_cols=180 Identities=19% Similarity=0.215 Sum_probs=129.1
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhH
Q 011908 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
++.+.+.+.......++++|.++++.+..+++++++|+||||||.++.++++....... ...+.++++++|+++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----~~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----RAAECNIVVTQPRRISA 122 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----CGGGCEEEEEESSHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----CCCceEEEEeccchHHH
Confidence 34444444455556789999999999999999999999999999988888887665421 12245899999999999
Q ss_pred HHHHHHHHHhCC-C--CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccc-cccCc
Q 011908 187 KQVEKEFHESAP-S--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-LSVGF 262 (475)
Q Consensus 187 ~Q~~~~l~~~~~-~--~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~-~~~~~ 262 (475)
.|+++.+...+. . ..+..-... .......+++|+|+||+++.+.+.. .+++++++|+||+|++ .+.++
T Consensus 123 ~q~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 123 VSVAERVAFERGEEPGKSCGYSVRF-----ESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp HHHHHHHHHTTTCCTTSSEEEEETT-----EEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHH
T ss_pred HHHHHHHHHHhccccCceEEEeech-----hhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHH
Confidence 999999987654 1 122211111 0001113478999999999998876 3789999999999985 55555
Q ss_pred H-HHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhcCCC
Q 011908 263 A-EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301 (475)
Q Consensus 263 ~-~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~ 301 (475)
. ..++.++... ++.|+++||||++... +...+...|
T Consensus 195 ~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 195 LLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred HHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 5 3556666665 5789999999999765 444443333
No 87
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=9.2e-22 Score=185.16 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=120.1
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC-
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~- 198 (475)
.+|+++|.++++.++.+.+.+++++||+|||++++.++...+.. .+.+++|++||++|+.|+++++.+++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 48999999999999988889999999999999998877765533 134799999999999999999999864
Q ss_pred -CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCC
Q 011908 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (475)
Q Consensus 199 -~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~ 277 (475)
...+..+.++..... ....+.+|+|+||+.+... ....+.+++++|+||+|++. +..+..++..+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~ 253 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCC
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCC
Confidence 345556666654322 2224579999999876432 22346788999999999985 446778888887789
Q ss_pred cEEEEeeecChhH
Q 011908 278 QSMMFSATMPPWI 290 (475)
Q Consensus 278 ~~l~~SAT~~~~~ 290 (475)
+++++||||++..
T Consensus 254 ~~l~lSATp~~~~ 266 (282)
T 1rif_A 254 FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEECSSCCTTS
T ss_pred eEEEEeCCCCCcc
Confidence 9999999997643
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.86 E-value=2.8e-20 Score=190.35 Aligned_cols=126 Identities=21% Similarity=0.205 Sum_probs=86.9
Q ss_pred CCCCCcHHHHHHhhh----hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHH
Q 011908 118 GISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 118 ~~~~l~~~Q~~~i~~----i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l 193 (475)
++ +++++|.+++.. +..++++++++|||+|||++|++|++.. +.+++|++||++|+.|+.+++
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHHH
Confidence 44 799999998765 4577899999999999999999998653 567999999999999999999
Q ss_pred HHhCCCCceEEEEcCCChhH-----------------------------------------------HHHHhhCCCCEEE
Q 011908 194 HESAPSLDTICVYGGTPISH-----------------------------------------------QMRALDYGVDAVV 226 (475)
Q Consensus 194 ~~~~~~~~~~~~~g~~~~~~-----------------------------------------------~~~~~~~~~~Ilv 226 (475)
..+ ++++..+.|..+... ..+.....++|+|
T Consensus 72 ~~l--~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 72 KLL--GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp GGG--TCCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred Hhc--CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 885 344444333221000 0001123479999
Q ss_pred EccHHHHHHHHhCCC-------CCCCccEEEEecccccc
Q 011908 227 GTPGRVIDLIKRNAL-------NLSEVQFVVLDEADQML 258 (475)
Q Consensus 227 ~T~~~l~~~l~~~~~-------~~~~l~~vIiDE~H~~~ 258 (475)
+|+..+.+...+..+ .+....++||||||++.
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999999864433221 24567899999999983
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.72 E-value=3.4e-22 Score=173.17 Aligned_cols=134 Identities=25% Similarity=0.422 Sum_probs=117.6
Q ss_pred EEEeccC-cchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011908 321 YSIATSM-YEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 321 ~~~~~~~-~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLv 398 (475)
.+...+. ..|...+..+++.. .++++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|++|+.+|||
T Consensus 7 ~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLv 85 (170)
T 2yjt_D 7 WYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 85 (170)
Confidence 3344444 67788888888764 567999999999999999999954 68899999999999999999999999999999
Q ss_pred EecccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcEEEeeChhhhhhcCC
Q 011908 399 ATDVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVLSEMLDADLLSSQGS 455 (475)
Q Consensus 399 aT~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~~~~~~~~~~~~~~~ 455 (475)
||+++++|+|+|++++||+++.|++...|+ +||+||.|+.|.+++++++.+...+..
T Consensus 86 aT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 144 (170)
T 2yjt_D 86 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 144 (170)
Confidence 999999999999999999999999999998 888999998999999999887764433
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=2.5e-19 Score=163.54 Aligned_cols=138 Identities=17% Similarity=0.082 Sum_probs=109.5
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~ 199 (475)
.+|+++|.++++.+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.|+++.+.++ +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~--~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG--C
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC--C
Confidence 48999999999999998899999999999999887665432 456999999999999999999994 5
Q ss_pred Cc-eEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCc
Q 011908 200 LD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 200 ~~-~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~ 278 (475)
+. +..+.|+.. ...+|+|+|++.+......- ..+++++|+||+|++.+..+ ..++..+ +..+
T Consensus 158 ~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~----~~i~~~~-~~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQMS-IAPF 220 (237)
T ss_dssp GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHTC-CCSE
T ss_pred CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHH----HHHHHhc-cCCE
Confidence 66 666655543 24699999999987655421 24589999999999977654 3455555 4678
Q ss_pred EEEEeeecCh
Q 011908 279 SMMFSATMPP 288 (475)
Q Consensus 279 ~l~~SAT~~~ 288 (475)
++++||||+.
T Consensus 221 ~l~LSATp~r 230 (237)
T 2fz4_A 221 RLGLTATFER 230 (237)
T ss_dssp EEEEEESCC-
T ss_pred EEEEecCCCC
Confidence 9999999876
No 91
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.80 E-value=2.1e-17 Score=169.65 Aligned_cols=127 Identities=18% Similarity=0.129 Sum_probs=96.8
Q ss_pred CCcHHHHHHhhhh----hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 121 KLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 121 ~l~~~Q~~~i~~i----~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
+++++|.+++..+ ..++++++++|||+|||++|++|++.. +.+++|++||++|+.|+.+++..+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 7999999987754 467899999999999999999999872 678999999999999999999887
Q ss_pred CC--CCceEEEEcCCCh---------------------------------hHHH------------------HHhhCCCC
Q 011908 197 AP--SLDTICVYGGTPI---------------------------------SHQM------------------RALDYGVD 223 (475)
Q Consensus 197 ~~--~~~~~~~~g~~~~---------------------------------~~~~------------------~~~~~~~~ 223 (475)
.. ++++..+.|..+. .... +.....++
T Consensus 71 ~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 71 REKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 54 4566665553221 0000 22234589
Q ss_pred EEEEccHHHHHHHHhCCCCC-CCccEEEEeccccccc
Q 011908 224 AVVGTPGRVIDLIKRNALNL-SEVQFVVLDEADQMLS 259 (475)
Q Consensus 224 Ilv~T~~~l~~~l~~~~~~~-~~l~~vIiDE~H~~~~ 259 (475)
|+|+|+..|.+...+..+.+ ....++||||||++.+
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999999987665544333 4678999999999765
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.71 E-value=6.7e-16 Score=159.73 Aligned_cols=80 Identities=21% Similarity=0.164 Sum_probs=63.2
Q ss_pred CCCcHHHHHHhhh----hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 120 SKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 120 ~~l~~~Q~~~i~~----i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
++|++.|.+.+.. +.+++++++++|||+|||++|++|++..+.. .+.+++|++||++|+.|+.+++..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHH
Confidence 4789999999875 4578899999999999999999999988754 256899999999999999999887
Q ss_pred hCC--CCceEEEEc
Q 011908 196 SAP--SLDTICVYG 207 (475)
Q Consensus 196 ~~~--~~~~~~~~g 207 (475)
+.. ++++..+.|
T Consensus 74 l~~~~~~~~~~l~g 87 (620)
T 4a15_A 74 LSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHSCCCEEECCC
T ss_pred HhhccCeEEEEEEC
Confidence 542 455554443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.62 E-value=2.2e-15 Score=139.74 Aligned_cols=124 Identities=17% Similarity=0.240 Sum_probs=97.5
Q ss_pred cCcchhhHHHHHHHhh-cCCCcEEEEeCChHHHHHHHHHHHc--cCCeeeecCCCCHHHHHHHHHHHhcC-CCc-EEEEe
Q 011908 326 SMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAMAK--SYNCEPLHGDISQSQRERTLSAFRDG-RFN-ILIAT 400 (475)
Q Consensus 326 ~~~~k~~~l~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~--~~~~~~lh~~~~~~~r~~~~~~F~~g-~~~-vLvaT 400 (475)
....|...+..+++.. ..+.++||||++...++.+...|.. ++.+..+||+++..+|.++++.|++| +.+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3456888888888765 3578999999999999999999964 78899999999999999999999999 677 79999
Q ss_pred cccccCCCCCCCCEEEecCCCCChhHHH--hhccCCCCCCCcE--EEeeChhh
Q 011908 401 DVAARGLDVPNVDLVELVVLERKEVQFL--STQISRPGKSRVL--SEMLDADL 449 (475)
Q Consensus 401 ~~l~~GiDip~~~~vI~~~~~~~~~~~~--~gR~gR~g~~~~~--~~~~~~~~ 449 (475)
+++++|+|++++++||+||+|+++..+. +||++|.|+.+.+ +.++..+.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999999999999999999999988 8888888887654 55666543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.79 E-value=1.3e-08 Score=105.19 Aligned_cols=143 Identities=20% Similarity=0.227 Sum_probs=85.7
Q ss_pred cHHHHHHhhhhhcCCcEEEEccCCCChhH--HhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCC
Q 011908 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTL--AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (475)
Q Consensus 123 ~~~Q~~~i~~i~~~~~~li~~~tGsGKT~--~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~ 200 (475)
++.|+.+++.++.++.++++|++|||||. .++++.+..+. ...+.++++++||..+|.++.+.+......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~-------~~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-------DGERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------hcCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999994 34444443321 1235689999999999999988776532211
Q ss_pred ce--EEEEcCCChhHHHHHhhCCC-CEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCC
Q 011908 201 DT--ICVYGGTPISHQMRALDYGV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (475)
Q Consensus 201 ~~--~~~~g~~~~~~~~~~~~~~~-~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~ 277 (475)
.+ ... .+.+. . .... .++-.+|+.. .+.........++++||||++.+ + ...+..++..++...
T Consensus 224 ~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~ 290 (608)
T 1w36_D 224 PLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHA 290 (608)
T ss_dssp SCCSCCC-CSCSC--C----CBTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTC
T ss_pred CCCHHHH-hccch--h----hhhhHhhhccCCCch--HHHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCC
Confidence 10 000 00000 0 0001 1111122211 11111222337899999999954 3 456778888898888
Q ss_pred cEEEEeee
Q 011908 278 QSMMFSAT 285 (475)
Q Consensus 278 ~~l~~SAT 285 (475)
|++++.=.
T Consensus 291 ~liLvGD~ 298 (608)
T 1w36_D 291 RVIFLGDR 298 (608)
T ss_dssp EEEEEECT
T ss_pred EEEEEcch
Confidence 88877543
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.47 E-value=9.1e-06 Score=81.13 Aligned_cols=70 Identities=21% Similarity=0.184 Sum_probs=51.4
Q ss_pred HCCCCCCcHHHHHHhhhhhcC-----CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHH
Q 011908 116 RRGISKLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 116 ~~~~~~l~~~Q~~~i~~i~~~-----~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 190 (475)
-..+..|++.|++++..+... ..+++.|+.|||||.+. ..++..+... ....+++++||...|..+.
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHAAKKILS 91 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHHHHHHHH
Confidence 345678999999999977532 37999999999999755 4455555431 1236999999999888776
Q ss_pred HHH
Q 011908 191 KEF 193 (475)
Q Consensus 191 ~~l 193 (475)
+.+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 655
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.47 E-value=3.1e-07 Score=95.88 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCcHHHHHHhhhhhcCCc-EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~-~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
.|.+.|.+|+..++..++ .+|+||+|||||.+..-.+.+.+ + .+.++|+++||...+.++.+++....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~--------~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-K--------QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-H--------TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-h--------CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 578999999999887654 79999999999988765555444 2 26679999999999999999987653
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.41 E-value=1.7e-06 Score=88.48 Aligned_cols=121 Identities=19% Similarity=0.212 Sum_probs=79.9
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~ 199 (475)
..+++.|.+++..+..+..+++.|++|||||.+. ..++..+.. .+..+++++||...+....+.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~~----- 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEVTG----- 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHHT-----
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhhc-----
Confidence 4799999999999998888999999999999764 334443322 26779999999998887766542
Q ss_pred CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHH----HHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCC
Q 011908 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL----IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (475)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~----l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~ 275 (475)
... .|..+++.. +..........+++||||++.+. ...+..++..++.
T Consensus 254 ~~a------------------------~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 254 RTA------------------------STVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPP 305 (574)
T ss_dssp SCE------------------------EEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCT
T ss_pred ccH------------------------HHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcC
Confidence 111 111111100 01111223467899999999763 4456677777776
Q ss_pred CCcEEEE
Q 011908 276 NRQSMMF 282 (475)
Q Consensus 276 ~~~~l~~ 282 (475)
..+++++
T Consensus 306 ~~~lilv 312 (574)
T 3e1s_A 306 GARVLLV 312 (574)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 6666554
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.34 E-value=6.2e-06 Score=85.57 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=55.8
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
..+++.|.+++..++.+...+++||+|||||.+..- ++..+.. ..+.++++++||...+.++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 468999999999988777789999999999987643 3344432 13667999999999999999998765
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=8.5e-06 Score=86.52 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=55.6
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
..+++.|.+|+..++.+...+|+||+|||||.+..-.+ ..+.+. .+.++++++||...+.++.+++.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 46889999999999877678999999999998764433 333321 2567999999999999999999875
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.21 E-value=1.4e-05 Score=84.77 Aligned_cols=69 Identities=23% Similarity=0.281 Sum_probs=55.8
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
..+++.|.+|+..++.+...+++||+|||||.+.. .++..+.+ ..+.++++++||...+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHT-------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHH-------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 46899999999998887778999999999998764 34444433 13667999999999999999988765
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.16 E-value=6.8e-05 Score=78.34 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=54.8
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
..|++.|.+++... +..++|.|+.|||||.+..--+...+.... ....+++++++|+..+.++.+++.+..
T Consensus 8 ~~Ln~~Q~~av~~~--~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAAP--RSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhCC--CCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 47899999999843 557999999999999877655554443211 123579999999999999999998764
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.55 E-value=4.1e-05 Score=73.71 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=55.6
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
+.|+++|...+..+...+.+++..+-+.|||.+....++..+.. ..+..+++++|++..|..+.+.++.+.
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 47899999999877555668999999999998776666554433 236689999999999998887776643
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.28 E-value=0.00071 Score=69.58 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=56.9
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
+.|+++|...+..+...+..++.++-|+|||.+....++..+.. ..+..++++.|+...|..+.+.++.+..
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 36899999999887555679999999999998776555554443 2356799999999999999888877654
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.08 E-value=0.0024 Score=62.22 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=60.1
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (475)
.++.|+.|||||... .+.+ . ....++++||++++.++.+.+.+... .
T Consensus 164 ~~I~G~aGsGKTt~I----~~~~-~---------~~~~lVlTpT~~aa~~l~~kl~~~~~----------~--------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI----LSRV-N---------FEEDLILVPGRQAAEMIRRRANASGI----------I--------- 210 (446)
T ss_dssp EEEEECTTSCHHHHH----HHHC-C---------TTTCEEEESCHHHHHHHHHHHTTTSC----------C---------
T ss_pred EEEEcCCCCCHHHHH----HHHh-c---------cCCeEEEeCCHHHHHHHHHHhhhcCc----------c---------
Confidence 689999999999633 1111 1 12369999999999999988864311 0
Q ss_pred hCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEE
Q 011908 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (475)
Q Consensus 219 ~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~ 282 (475)
.....-|.|.++++. ..........+++||||+-.+ . ...+..++...+. .+++++
T Consensus 211 -~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilv 266 (446)
T 3vkw_A 211 -VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVY 266 (446)
T ss_dssp -CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEE
T ss_pred -ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEe
Confidence 001223667664432 112222234789999999854 2 2333444455433 444443
No 105
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.08 E-value=0.0026 Score=59.13 Aligned_cols=120 Identities=12% Similarity=0.072 Sum_probs=83.6
Q ss_pred cCcchhhHHHHHHHhhc-CCCcEEEEeCChHHHHHHHHHHH-ccCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 011908 326 SMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDVA 403 (475)
Q Consensus 326 ~~~~k~~~l~~~~~~~~-~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~l 403 (475)
....|..++..++.... .+.+++||++.....+.+..++. +++++..+.|.....+ ++ -.+....+.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCC
Confidence 35678999999988754 47799999999999999999984 5688888998855432 21 124556666667766
Q ss_pred ccCCC-----CCCCCEEEecCCCCChhHH-H--hhccCCCC----CCCcEEEeeChhhh
Q 011908 404 ARGLD-----VPNVDLVELVVLERKEVQF-L--STQISRPG----KSRVLSEMLDADLL 450 (475)
Q Consensus 404 ~~GiD-----ip~~~~vI~~~~~~~~~~~-~--~gR~gR~g----~~~~~~~~~~~~~~ 450 (475)
.-|++ ...++.||.||..+++..- + +-|+.|.| +.-..+.+++....
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 66775 6799999999999998865 3 45666663 33466777765544
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.05 E-value=0.0042 Score=52.99 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.||+|+|||..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999755
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.96 E-value=0.0007 Score=58.25 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
++-.++.|++|+|||..++-.+..... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~---------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL---------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH---------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEeecc
Confidence 445789999999999766444433331 256788888874
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.79 E-value=0.0022 Score=55.32 Aligned_cols=38 Identities=13% Similarity=-0.093 Sum_probs=26.8
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
+=.++.|++|||||..++-.+.... ..+.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~---------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAK---------IAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH---------HTTCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH---------HCCCEEEEEEecc
Confidence 3478899999999976654444433 2377899999874
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.79 E-value=0.0016 Score=53.77 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+.+.|++|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999644
No 110
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.029 Score=49.05 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=25.0
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEee
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SA 284 (475)
..-.++|+||+|.+... ....+..++...+.+..+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45678999999987543 34445555666555554554443
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.61 E-value=0.0097 Score=56.07 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+..+++.||+|+|||..+ -.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 357999999999999755 3344443
No 112
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.61 E-value=0.0041 Score=65.11 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=55.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
.|++-|++++... +.+++|.|..|||||.+..--+...+.... -...++++++.|+..|.++.+++.+..+
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5889999999864 568999999999999877655555543311 1245699999999999999999988754
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.61 E-value=0.0012 Score=58.44 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=50.2
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 216 (475)
.-.++.|++|+|||..++-.+.... ..+.+++++.|...- . ........+ |...
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~---------~~g~kVli~~~~~d~-r----~~~~i~srl-------G~~~----- 66 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLE---------YADVKYLVFKPKIDT-R----SIRNIQSRT-------GTSL----- 66 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH---------HTTCCEEEEEECCCG-G----GCSSCCCCC-------CCSS-----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH---------hcCCEEEEEEeccCc-h----HHHHHHHhc-------CCCc-----
Confidence 3478899999999976654444433 236678988876531 0 000111111 1000
Q ss_pred HhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEecccccc
Q 011908 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 217 ~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~ 258 (475)
..+-+.+...+...+.... .-...++|||||++.+.
T Consensus 67 -----~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 -----PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -----CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred -----cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1233455566666555422 22457899999999743
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0097 Score=55.62 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=18.8
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~ 162 (475)
.++++.||+|+|||.++ -.++..+.
T Consensus 46 ~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 46 KLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 56999999999999765 44445543
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.37 E-value=0.0031 Score=55.02 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=26.9
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
=.++.|+.|||||..++-.+.... ..+.+++++.|...
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~---------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQ---------FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH---------HTTCCEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH---------HCCCEEEEEEeccC
Confidence 357899999999976655555544 23778999999764
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.35 E-value=0.0079 Score=63.40 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 120 ~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
..|++.|++++... +..++|.|..|||||.+..--+...+.... -...++++++.|+..|.++.+++....
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 46899999999763 458999999999999877655555543211 124579999999999999998887753
No 117
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.35 E-value=0.016 Score=53.42 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=31.7
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh--hhcCCcEEEEccCCCChhHHh
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.+..++.+.+.-...+ ...+.+.. +.....+++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPL--KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHH--HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHh--hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34556677666777777665321000 01112222 233467999999999999755
No 118
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.29 E-value=0.0075 Score=67.42 Aligned_cols=106 Identities=19% Similarity=0.104 Sum_probs=69.5
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCC
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~ 200 (475)
++|+-|.++|..- +.+++|.|..|||||.+.+--++..+..... .-...+++++++|+..|.++.+++.+.....
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 6899999999765 6799999999999998876666666643110 0124579999999999999999888743210
Q ss_pred -ceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHH
Q 011908 201 -DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI 236 (475)
Q Consensus 201 -~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l 236 (475)
.. .... ..-...+..-..+-|+|.+.+...+
T Consensus 85 ~~~----~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~ 116 (1232)
T 3u4q_A 85 LVQ----RPGS-LHIRRQLSLLNRASISTLHSFCLQV 116 (1232)
T ss_dssp HHH----STTC-HHHHHHHHHTTTSEEECHHHHHHHH
T ss_pred hhc----Ccch-HHHHHHHhccCCCeEEeHHHHHHHH
Confidence 00 0000 1111111112356789988876544
No 119
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.27 E-value=0.021 Score=56.22 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=17.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
..+++.||+|+|||..+ -++...+
T Consensus 131 ~~lll~Gp~G~GKTtLa-~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL-QSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999755 3333333
No 120
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.23 E-value=0.0045 Score=53.12 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=26.1
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCC
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt 182 (475)
+=.++.|++|||||.-.+-.+-+...+ +.+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~---------~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEccc
Confidence 347889999999996554444444322 5679999886
No 121
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.21 E-value=0.02 Score=60.44 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=78.1
Q ss_pred ccCcchhh-HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011908 325 TSMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILI 398 (475)
Q Consensus 325 ~~~~~k~~-~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLv 398 (475)
.....|.. .+..++.....+.+++|.+|++.-+++.++.+.+ ++++..+||+++..++...++.+.+|+.+|+|
T Consensus 397 ~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvV 476 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVI 476 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 33445543 3334444445678999999999988888777643 57899999999999999999999999999999
Q ss_pred Eec-ccccCCCCCCCCEEEecCCCCChhHH
Q 011908 399 ATD-VAARGLDVPNVDLVELVVLERKEVQF 427 (475)
Q Consensus 399 aT~-~l~~GiDip~~~~vI~~~~~~~~~~~ 427 (475)
+|. .+...+++.++..||+-...+.+..+
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESCCCC----
T ss_pred ECHHHHhhhhhccCCceEEecccchhhHHH
Confidence 995 45567888999999987777765544
No 122
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.20 E-value=0.0083 Score=56.83 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=26.7
Q ss_pred CcHHHHHHhhhhh----cCC---cEEEEccCCCChhHHhHHHHHHHH
Q 011908 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 122 l~~~Q~~~i~~i~----~~~---~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+.|+|.+++..+. +++ ..++.||.|+|||..+. .+...+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHH
Confidence 4678888876554 333 38999999999997663 333444
No 123
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.16 E-value=0.011 Score=60.52 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~--~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
.+|..|.+++..+..- ...++.|+-|.|||.+.-+++. .+ ...++|.+|+.+-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~-----------~~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RI-----------AGRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HS-----------SSCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HH-----------HhCcEEECCCHHHHHHHHHHhhC---
Confidence 5799999999988763 3479999999999955444333 22 11369999998876654443321
Q ss_pred CCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhCCCCCc
Q 011908 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (475)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~ 278 (475)
.|-+..|+.+. . ...+.+++|||||=.+ -...+..++.. ..
T Consensus 240 ------------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaI----p~pll~~ll~~----~~ 280 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAI----PAPLLHQLVSR----FP 280 (671)
T ss_dssp ------------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGS----CHHHHHHHHTT----SS
T ss_pred ------------------------CeEEeCchhhh---h----CcccCCEEEEEchhcC----CHHHHHHHHhh----CC
Confidence 12233454432 1 1345889999999986 34555555542 34
Q ss_pred EEEEeeecCh
Q 011908 279 SMMFSATMPP 288 (475)
Q Consensus 279 ~l~~SAT~~~ 288 (475)
.++||.|+..
T Consensus 281 ~v~~~tTv~G 290 (671)
T 2zpa_A 281 RTLLTTTVQG 290 (671)
T ss_dssp EEEEEEEBSS
T ss_pred eEEEEecCCc
Confidence 6888999743
No 124
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.09 E-value=0.024 Score=46.28 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..+.++++.|++|+|||.++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34568999999999999765
No 125
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.019 Score=55.27 Aligned_cols=56 Identities=16% Similarity=0.004 Sum_probs=35.4
Q ss_pred CccCCCccCCCCCHHHHHHHHHCCC---CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 95 KDEGLDISKLDISQDIVAALARRGI---SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~---~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
+.+..+|++++=-+..++.+.+.=. ..|--++..- +..-+.+|+.||+|||||+.+
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 3456788888766777777776422 1121222211 222367999999999999865
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.97 E-value=0.084 Score=51.45 Aligned_cols=55 Identities=11% Similarity=0.274 Sum_probs=38.3
Q ss_pred CCccEEEEecccccc---ccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhc
Q 011908 244 SEVQFVVLDEADQML---SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~---~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 298 (475)
.+.+++|+|++-+.. +..+...+..+.....+..-+++++|+........+..+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 468899999998753 3335566777777776666788899987666555555443
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.89 E-value=0.052 Score=52.11 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
...+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999755
No 128
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.88 E-value=0.052 Score=49.53 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.8
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999765
No 129
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.85 E-value=0.012 Score=51.94 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=29.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
++=.++.|+.|||||..++-.+.... ..|.+++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~---------~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ---------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH---------TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCeEEEEeecCC
Confidence 34468899999999976655555544 44778999998753
No 130
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.027 Score=55.05 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=35.9
Q ss_pred CccCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhh--hhcCCcEEEEccCCCChhHHh
Q 011908 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~--i~~~~~~li~~~tGsGKT~~~ 153 (475)
+.+..+|++++--+..++.|.+.-...+.. .+.+.. +..-+.+|+.||+|||||+.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~--pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLS--PERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHC--HHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcC--HHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 356678999887788888887642211111 111211 223357999999999999755
No 131
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.67 E-value=0.022 Score=50.68 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.||+|+|||..+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999755
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.58 E-value=0.059 Score=46.56 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=17.8
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
..+++.|++|+|||..+ .++...+
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 67999999999999755 3344433
No 133
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.57 E-value=0.012 Score=51.18 Aligned_cols=39 Identities=13% Similarity=-0.015 Sum_probs=25.7
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
+=.++.|+.|||||...+-.+.... ..+.+++++.|...
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~---------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGI---------YAKQKVVVFKPAID 67 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH---------HTTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---------HcCCceEEEEeccC
Confidence 3468899999999965544443332 22667999999654
No 134
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.44 E-value=0.02 Score=53.93 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=31.0
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhh-----cCCcEEEEccCCCChhHHh
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM-----QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~-----~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.+..++.+.+.-. .+. ..+.+. ..+.+++.||+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44557777666777777765321 111 111111 2346999999999999765
No 135
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.19 E-value=0.022 Score=53.53 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=22.6
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEE
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~ 281 (475)
...+++++||+|.+........+...+...+.+..+++
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 46789999999997511133344444554444454444
No 136
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.19 E-value=0.057 Score=45.63 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.|++|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356999999999999755
No 137
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.17 E-value=0.088 Score=49.18 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=24.1
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
....++|+||+|.+... ....+...+...+.+..+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999987543 2344455555555555444433
No 138
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.15 E-value=0.031 Score=52.00 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=30.6
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhh-hhhcCCcEEEEccCCCChhHHh
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLE-PAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~-~i~~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.+..++.+.+.-. .+..+...... .+..++.+++.||+|+|||..+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 34556666656666666654311 00000111111 1233467999999999999755
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.95 E-value=0.54 Score=39.46 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.|++|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 56999999999999755
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.84 E-value=0.048 Score=52.47 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.3
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999755
No 141
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.83 E-value=0.076 Score=52.25 Aligned_cols=17 Identities=41% Similarity=0.388 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999755
No 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.78 E-value=0.23 Score=44.69 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999755
No 143
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.74 E-value=0.087 Score=45.15 Aligned_cols=140 Identities=16% Similarity=0.081 Sum_probs=70.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH-hHHHHHHHHHHhCCCCceEEEEcCCChhHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~-La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (475)
..+++-.++|.|||.+++-.++.++ +.|.+++|+.=.+. ...--.+.+..+ ++. ....|.......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~---------g~G~rV~~vQF~Kg~~~~gE~~~l~~L--~v~--~~~~g~gf~~~~ 95 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV---------GHGKNVGVVQFIKGTWPNGERNLLEPH--GVE--FQVMATGFTWET 95 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH---------HTTCCEEEEESSCCSSCCHHHHHHGGG--TCE--EEECCTTCCCCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---------HCCCeEEEEEeeCCCCCccHHHHHHhC--CcE--EEEcccccccCC
Confidence 3689999999999998887777777 44888999853331 000001222222 122 222221110000
Q ss_pred HHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccC--cHHHHHHHHHhCCCCCcEEEEeeecChhHHHH
Q 011908 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~--~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~ 293 (475)
..... +.. .--..|..... .+.-..+++||+||.-.....+ -...+..++...+....+|+.+--+|+.+...
T Consensus 96 ~~~~~--~~~-~a~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 96 QNREA--DTA-ACMAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp GGHHH--HHH-HHHHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred CCcHH--HHH-HHHHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 00000 000 00111111111 1222568999999996533222 24556667777766666666555566655544
Q ss_pred H
Q 011908 294 T 294 (475)
Q Consensus 294 ~ 294 (475)
+
T Consensus 171 A 171 (196)
T 1g5t_A 171 A 171 (196)
T ss_dssp C
T ss_pred C
Confidence 3
No 144
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.73 E-value=0.068 Score=51.32 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=17.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
..+++.||+|+|||..+ ..+...+
T Consensus 46 ~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999765 3344443
No 145
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.66 E-value=0.064 Score=50.37 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=30.0
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhh-----cCCcEEEEccCCCChhHHh
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM-----QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~-----~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.+..++.+.+.-. .+.+ .+.+. ..+.+++.||+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 34567777666777766654210 0110 11111 2256999999999999755
No 146
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.64 E-value=0.096 Score=49.36 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.0
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 47999999999999755
No 147
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.59 E-value=0.086 Score=50.91 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+++++.||+|+|||.++
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999765
No 148
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.54 E-value=0.057 Score=50.19 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=15.0
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||.++
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999765
No 149
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.47 E-value=0.13 Score=49.92 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=71.3
Q ss_pred cCcchhh-HHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 011908 326 SMYEKPS-IIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIAT 400 (475)
Q Consensus 326 ~~~~k~~-~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT 400 (475)
....|.. .+..++.....+.+++|.+|+++-+.++++.+.. ++.+..+||+.+..++....+.+.+|+.+|+|+|
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~T 124 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFS 124 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEEC
Confidence 3344443 2233333445678999999999999999988865 6789999999999999999999999999999999
Q ss_pred cc-cc---cCCCCCCCCEEEecCC
Q 011908 401 DV-AA---RGLDVPNVDLVELVVL 420 (475)
Q Consensus 401 ~~-l~---~GiDip~~~~vI~~~~ 420 (475)
.- +. .-++..+++++|+-.+
T Consensus 125 p~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 125 TQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp HHHHHHCHHHHTTCCCSEEEESCH
T ss_pred HHHHHHHHHHhccccccEEEEeCh
Confidence 52 21 1255668888887555
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.39 E-value=0.3 Score=42.90 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|++|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 151
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.35 E-value=0.14 Score=47.86 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=15.0
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999755
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.35 E-value=0.14 Score=49.04 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+++.|++|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999754
No 153
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.31 E-value=0.057 Score=53.18 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.0
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|+|||..+
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999755
No 154
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.24 E-value=0.33 Score=45.84 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=24.3
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
...+++++||+|.+... ....+...+...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35679999999987543 3344555566655555455544
No 155
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.23 E-value=0.15 Score=48.45 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=15.0
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|+|||..+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999765
No 156
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.05 E-value=0.19 Score=47.35 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=25.3
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
...+++|+||+|.+... ....+...+...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987543 3444556666665555555443
No 157
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.95 E-value=0.37 Score=45.84 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=17.8
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+.+++.||+|+|||..+ ..+...+
T Consensus 71 ~~vLl~GppGtGKT~la-~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA-MGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHHh
Confidence 57999999999999765 3343333
No 158
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.88 E-value=0.78 Score=44.68 Aligned_cols=131 Identities=11% Similarity=0.069 Sum_probs=66.3
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe--CCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~--Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~ 215 (475)
-+++.|++|+|||.++.-.+ ..+. ..|.+++++. |.+.-+.+....+.+.. ++. +......
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~--------~~G~kVllv~~D~~R~aa~eqL~~~~~~~-gvp--v~~~~~~----- 164 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQ--------KRGYKVGVVCSDTWRPGAYHQLRQLLDRY-HIE--VFGNPQE----- 164 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHH--------TTTCCEEEEECCCSSTHHHHHHHHHHGGG-TCE--EECCTTC-----
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHH--------HCCCeEEEEeCCCcchhHHHHHHHHHHhc-CCc--EEecCCC-----
Confidence 47889999999998764333 2222 2355676666 45554443333333321 222 2211111
Q ss_pred HHhhCCCCEEEEccHHHH-HHHHhCCCCCCCccEEEEecccccccc-CcHHHHHHHHHhCCCCCcEEEEeeecChhHHHH
Q 011908 216 RALDYGVDAVVGTPGRVI-DLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (475)
Q Consensus 216 ~~~~~~~~Ilv~T~~~l~-~~l~~~~~~~~~l~~vIiDE~H~~~~~-~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~ 293 (475)
..|..+. +.+.... -.+++++|||.+=+.... .....+..+.....++.-++++.||........
T Consensus 165 -----------~dp~~i~~~al~~a~--~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~ 231 (443)
T 3dm5_A 165 -----------KDAIKLAKEGVDYFK--SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ 231 (443)
T ss_dssp -----------CCHHHHHHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH
T ss_pred -----------CCHHHHHHHHHHHHH--hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH
Confidence 1122221 2222110 124678999988654321 133445555555555656788888876655555
Q ss_pred HHHhc
Q 011908 294 TNKYL 298 (475)
Q Consensus 294 ~~~~~ 298 (475)
+..+.
T Consensus 232 a~~f~ 236 (443)
T 3dm5_A 232 ALAFK 236 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 159
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.84 E-value=0.26 Score=48.77 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=40.8
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCC
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~ 200 (475)
.+....+.|-+|||||+++.- ++.. .+..+++|+|+...|.|+++.++.++++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~-----------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~ 66 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER-----------HAGPVVLIAPDMQNALRLHDEISQFTDQM 66 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH-----------SSSCEEEEESSHHHHHHHHHHHHHTCSSC
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH-----------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc
Confidence 345688999999999975422 2211 13348999999999999999999988653
No 160
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.78 E-value=0.21 Score=49.06 Aligned_cols=114 Identities=18% Similarity=0.063 Sum_probs=55.6
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEE-EcCCChhH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISH 213 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~-~g~~~~~~ 213 (475)
.|.-+++.|++|+|||..++-.+.+.... .+..++++.. +.-..|+..++.....++...-+ .|......
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g~~vl~~sl-E~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~ 269 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--------EGVGVGIYSL-EMPAAQLTLRMMCSEARIDMNRVRLGQLTDRD 269 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCCEEEEES-SSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEEC-CCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHH
Confidence 33458999999999997665544444321 1445777654 33345555554332112211101 12222111
Q ss_pred H------HHHhhCCCCEEEE-----ccHHHHHHHHhCCCCCCCccEEEEeccccccc
Q 011908 214 Q------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (475)
Q Consensus 214 ~------~~~~~~~~~Ilv~-----T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~ 259 (475)
. ...+.. ..+.+- |.+.+...+.+-.. -..+++||||..+.+..
T Consensus 270 ~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 270 FSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 1 111222 345553 33444433322100 12578999999998764
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.76 E-value=0.2 Score=46.55 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=23.3
Q ss_pred CccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 245 ~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
...++|+||+|.+... ....+...+...+.+..+++.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4789999999987543 2333445555555555555544
No 162
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.52 E-value=0.099 Score=48.31 Aligned_cols=17 Identities=18% Similarity=0.095 Sum_probs=14.4
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999755
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.39 E-value=0.25 Score=49.65 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=25.9
Q ss_pred CCccEEEEeccccccccC--cHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 244 SEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~--~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
..-.+++|||+|.+.... ....+..++... ...+++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 345789999999986532 224445555542 44577777764
No 164
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.38 E-value=0.44 Score=41.74 Aligned_cols=24 Identities=29% Similarity=0.074 Sum_probs=17.7
Q ss_pred hhcCCcEEEEccCCCChhHHhHHH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIP 156 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~ 156 (475)
+..|.-+++.|++|+|||..+...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHF 43 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHH
Confidence 334566899999999999755433
No 165
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.35 E-value=0.35 Score=48.07 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=27.0
Q ss_pred cEEEEeccccccccC----------cHHHHHHHHHhCCCCCcEEEEeeecCh
Q 011908 247 QFVVLDEADQMLSVG----------FAEDVEVILERLPQNRQSMMFSATMPP 288 (475)
Q Consensus 247 ~~vIiDE~H~~~~~~----------~~~~~~~il~~~~~~~~~l~~SAT~~~ 288 (475)
+++++||+|.+.... ....+...+........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 579999999876421 123344445555566678888888544
No 166
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.62 Score=43.11 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
....+++||||+|.+... -...+.+.+..-+++..+++.|
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEE
Confidence 356889999999998543 2233444455444444444433
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.10 E-value=0.34 Score=47.80 Aligned_cols=50 Identities=20% Similarity=0.070 Sum_probs=30.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l 193 (475)
.|.-+++.|++|+|||..++..+...... .|..++++..- .-..|+..++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~E-~s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSLE-MSAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEESS-SCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEECC-CCHHHHHHHH
Confidence 44558999999999997665544444322 14457776642 2234555544
No 168
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.91 E-value=0.33 Score=53.69 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=79.0
Q ss_pred eccCcchhhHHH-HHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEE
Q 011908 324 ATSMYEKPSIIG-QLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNIL 397 (475)
Q Consensus 324 ~~~~~~k~~~l~-~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vL 397 (475)
......|..... .+......+.+++|.||+..-+++.++.+.+ ...+..+++..+..++...++.+.+|+.+|+
T Consensus 631 ~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIv 710 (1151)
T 2eyq_A 631 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 710 (1151)
T ss_dssp CCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 344455554332 3333445678999999999999888888754 3578899999999999999999999999999
Q ss_pred EEe-cccccCCCCCCCCEEEecCCCCChhHH
Q 011908 398 IAT-DVAARGLDVPNVDLVELVVLERKEVQF 427 (475)
Q Consensus 398 vaT-~~l~~GiDip~~~~vI~~~~~~~~~~~ 427 (475)
|+| ..+...+.+.++.+||+-...+.+..+
T Consensus 711 V~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~ 741 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 741 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEEESGGGSCHHH
T ss_pred EECHHHHhCCccccccceEEEechHhcChHH
Confidence 999 456667888899888876666655443
No 169
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.72 E-value=0.16 Score=47.26 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.3
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999755
No 170
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.65 E-value=0.47 Score=45.10 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.||.|+|||..+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999755
No 171
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.11 Score=50.56 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=37.1
Q ss_pred CccCCCccCCCCCHHHHHHHHHCC---CCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 95 KDEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
+.+..+|++++--+..++.+.+.- ...|--++..-+ ..-+.+|+.||+|||||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 456678999988888888887542 122323332222 12357999999999999865
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.41 E-value=0.36 Score=45.64 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=27.1
Q ss_pred CCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 244 ~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
.+.+++|+||+|.+ +......+...+...+.+..+++.|-.+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 46779999999984 3334556666777766665555555443
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.26 E-value=0.25 Score=48.84 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=29.0
Q ss_pred cCCCccCCCCCHHHHHHHHHCC--CCCCcHHHHHHhhhhh--cCCcEEEEccCCCChhHHh
Q 011908 97 EGLDISKLDISQDIVAALARRG--ISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~--~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (475)
...+|+++.-.+..++.+.+.- +..+ ..+..+- -.+.+++.||+|+|||..+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~-----~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDP-----SKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCT-----HHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhCh-----HHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3455666665566666665421 0011 1111111 1246999999999999755
No 174
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.94 E-value=0.39 Score=52.82 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=72.1
Q ss_pred ccCcchhhHH-HHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011908 325 TSMYEKPSII-GQLITEHAKGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (475)
Q Consensus 325 ~~~~~k~~~l-~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 399 (475)
.....|..+. ..++.....+.+++|.+|+++-+.++++.+.. ++.+..+||+++..++....+.+.+|+.+|+|+
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~ 180 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVF 180 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 3444554433 23333445678999999999999999999976 468999999999988899999999999999999
Q ss_pred ec-cccc---CCCCCCCCEEEecCC
Q 011908 400 TD-VAAR---GLDVPNVDLVELVVL 420 (475)
Q Consensus 400 T~-~l~~---GiDip~~~~vI~~~~ 420 (475)
|. .+.. -++..++.++|+-.+
T Consensus 181 Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 181 STQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp EHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred CHHHHHHHHHhhcccCcCEEEEeCC
Confidence 95 2211 255678888887554
No 175
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.90 E-value=1.6 Score=37.06 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=55.4
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---h-CCCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++++.-+..+++.|... ++.+..+.|+.+..++...+ . ....|+|+| +.+.. .+++.++++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v~~ 125 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAIQH 125 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccCCE
Confidence 457999999999999999999887 67788889988766554333 2 348999999 55543 566788888
Q ss_pred EEEec
Q 011908 249 VVLDE 253 (475)
Q Consensus 249 vIiDE 253 (475)
||.-+
T Consensus 126 VI~~d 130 (191)
T 2p6n_A 126 VINYD 130 (191)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 87633
No 176
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.87 E-value=0.26 Score=47.65 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=14.0
Q ss_pred CcEEE--EccCCCChhHHh
Q 011908 137 RDMIG--RARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li--~~~tGsGKT~~~ 153 (475)
..+++ .|+.|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35788 899999999755
No 177
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.80 E-value=1 Score=39.74 Aligned_cols=25 Identities=20% Similarity=-0.043 Sum_probs=18.5
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHH
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPIL 158 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l 158 (475)
..+.-+.+.||+|+|||..+...+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456689999999999976644433
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.47 E-value=0.24 Score=46.58 Aligned_cols=53 Identities=21% Similarity=0.090 Sum_probs=33.4
Q ss_pred hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
+..|.-+++.|++|+|||..++-.+..... .+..++|+.. +.-..|+..++..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g~~Vl~fSl-Ems~~ql~~Rlls 95 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DDRGVAVFSL-EMSAEQLALRALS 95 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TTCEEEEEES-SSCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeC-CCCHHHHHHHHHH
Confidence 344456899999999999766554444432 2556777664 4445666655543
No 179
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.29 E-value=0.15 Score=41.38 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..+.++++.|++|+|||.++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34568999999999999744
No 180
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.16 E-value=0.15 Score=49.69 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=33.8
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCC---CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 96 DEGLDISKLDISQDIVAALARRGI---SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~---~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+|++++--+..++.+.+.-. ..|--++..- +..-+.+|+.||+|||||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 566778888766777777765311 1111122111 122357999999999999865
No 181
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.07 E-value=0.82 Score=42.33 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=50.9
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 217 (475)
-.++.||+|+|||..++..+.+.... +.+..++++..-..+... ..+.+.-+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-------g~g~~vlyId~E~s~~~~---ra~~lGvd~d---------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-------YPDAVCLFYDSEFGITPA---YLRSMGVDPE---------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-------CTTCEEEEEESSCCCCHH---HHHHTTCCGG----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEeccchhhHH---HHHHhCCCHH----------------
Confidence 47899999999998776655554422 225678888765555432 2444433322
Q ss_pred hhCCCCEEEEcc---HHH-HHHHHh-CCCCCCCccEEEEecccccc
Q 011908 218 LDYGVDAVVGTP---GRV-IDLIKR-NALNLSEVQFVVLDEADQML 258 (475)
Q Consensus 218 ~~~~~~Ilv~T~---~~l-~~~l~~-~~~~~~~l~~vIiDE~H~~~ 258 (475)
++++..| +.+ +..+.. ..+.-...++||||-+..+.
T Consensus 84 -----~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 -----RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 2333333 222 222211 11222468899999998775
No 182
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.04 E-value=0.19 Score=48.83 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=34.3
Q ss_pred CccCCCccCCCCCHHHHHHHHHCCC---CCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 95 KDEGLDISKLDISQDIVAALARRGI---SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~~---~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
+.+..+|++++=-+..++.+.+.-. ..+--++..- +...+.+|+.||+|||||+.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 3556778888766777777765311 1111122111 122356999999999999865
No 183
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.63 E-value=0.45 Score=39.97 Aligned_cols=121 Identities=10% Similarity=0.076 Sum_probs=72.8
Q ss_pred CcHHHHHHhhhhhcCC--cEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCC
Q 011908 122 LFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~--~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~ 199 (475)
-.+-|..++..+.... -.++++.-|++||...+..++... + ..|.++.+++|+..-+....+...--..-
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a-~-------~~Gr~V~vLAp~~~s~~~l~~~~~l~~~t 106 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA-R-------EQGREVQIIAADRRSQMNMKQDERLSGEL 106 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH-H-------HTTCCEEEECSTTHHHHHHSCTTTCSSCS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH-H-------hcCeEEEEEcCchHHHHHHHhhcCcCcce
Confidence 3467899999887554 478899999999976533333322 2 34888999999987665543332211100
Q ss_pred CceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEEEeccccccccCcHHHHHHHHHhC-CCCCc
Q 011908 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQ 278 (475)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~-~~~~~ 278 (475)
++. +.+......|..=+++||||+-.+. ..++..++..- ..+.|
T Consensus 107 --------------------------~t~-----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 107 --------------------------ITG-----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp --------------------------SST-----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred --------------------------eeh-----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 011 2222333334556689999999874 33444444332 34567
Q ss_pred EEEEeee
Q 011908 279 SMMFSAT 285 (475)
Q Consensus 279 ~l~~SAT 285 (475)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 7776544
No 184
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.26 E-value=1.8 Score=35.53 Aligned_cols=74 Identities=15% Similarity=0.306 Sum_probs=55.5
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++++.-+..+++.+.+. ++.+..++|+.+...+...+ .. ...|+|+| +.+. ..+++.++++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gld~~~~~~ 106 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAA-RGIDIENISL 106 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGT-TTCCCSCCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhh-cCCchhcCCE
Confidence 457999999999999999999886 67788889988766554333 23 48999999 4433 4566778888
Q ss_pred EEEecc
Q 011908 249 VVLDEA 254 (475)
Q Consensus 249 vIiDE~ 254 (475)
||.-+.
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 886443
No 185
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.17 E-value=7.8 Score=35.96 Aligned_cols=52 Identities=15% Similarity=0.342 Sum_probs=28.6
Q ss_pred cHHHHHHHHhCCCCCCCccEEEEeccccccc---cCcHHHHHHHHHhCCCCCcEEEEeee
Q 011908 229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLS---VGFAEDVEVILERLPQNRQSMMFSAT 285 (475)
Q Consensus 229 ~~~l~~~l~~~~~~~~~l~~vIiDE~H~~~~---~~~~~~~~~il~~~~~~~~~l~~SAT 285 (475)
...+...+..... .--++|+||+|.+.. ..+...+..+.... .+. .++++++
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~i~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRI-KFIMSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTE-EEEEEES
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCe-EEEEEcC
Confidence 3445555543211 234799999998764 34555666665554 233 3444554
No 186
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.99 E-value=0.41 Score=42.56 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=18.2
Q ss_pred hhhcCCcEEEEccCCCChhHHhHH
Q 011908 132 PAMQGRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~~~ 155 (475)
.+..|.-+.+.||+|||||..+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 344566789999999999975543
No 187
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.56 E-value=0.85 Score=52.75 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=31.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
+..+++.||+|+|||..+...+.+.. ..|.+++|+..-..+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~---------~~G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ---------REGKTCAFIDAEHALDP 1469 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH---------TTTCCEEEECTTSCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---------HcCCcEEEEEcccccCH
Confidence 56899999999999988766555554 23777888876544433
No 188
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.55 E-value=0.28 Score=47.46 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=35.3
Q ss_pred CccCCCccCCCCCHHHHHHHHHCC---CCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 95 KDEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+..+|++++=-+..++.+.+.- +..+--++..-+ ..-+.+|+.||+|||||+.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 456678888876677777776531 222322332222 12356999999999999855
No 189
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.41 E-value=3.1 Score=34.18 Aligned_cols=73 Identities=12% Similarity=0.320 Sum_probs=54.4
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++++.-+..+++.+.+. ++.+..++|+.+...+...+ .. ...|+|+| +.+. ..+++.++++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~G~d~~~~~~ 101 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLA-RGIDVQQVSL 101 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGT-TTCCCCSCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhh-cCCCcccCCE
Confidence 567999999999999999999886 56788888988766554333 23 48999999 4333 4566778888
Q ss_pred EEEec
Q 011908 249 VVLDE 253 (475)
Q Consensus 249 vIiDE 253 (475)
||.-+
T Consensus 102 Vi~~~ 106 (165)
T 1fuk_A 102 VINYD 106 (165)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 87644
No 190
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.38 E-value=0.49 Score=41.90 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=33.0
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
..|.-+++.|++|+|||..++..+...... +..++++.- ..-..++.+.+...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---------~~~v~~~~~-e~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---------GEPGIYVAL-EEHPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---------TCCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEEc-cCCHHHHHHHHHHc
Confidence 345668999999999998654444443321 445677663 33456666666543
No 191
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.29 E-value=1.7 Score=40.56 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=31.7
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh-HHHHHHHHHHh
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL-AKQVEKEFHES 196 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L-a~Q~~~~l~~~ 196 (475)
+.-+++.|++|+|||..++..+...... ...+ +.+..++++.--..+ ..++.+.+..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~--~~~g-g~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLP--PEKG-GLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSC--GGGT-CCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcc--cccC-CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999997665444332211 0011 114567777644332 44555555443
No 192
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.18 E-value=0.6 Score=47.15 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999755
No 193
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=88.82 E-value=5.4 Score=35.04 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=55.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc-cCCCCCC
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA-RGLDVPN 411 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~l~-~GiDip~ 411 (475)
.+.+++|.||+++-++++.+.+.+ ++.+..++|+.+..+....+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999999888777754 5788899999987766554432 478999995 222 3457888
Q ss_pred CCEEEecCCC
Q 011908 412 VDLVELVVLE 421 (475)
Q Consensus 412 ~~~vI~~~~~ 421 (475)
++++|+-.+.
T Consensus 177 ~~~lViDEah 186 (242)
T 3fe2_A 177 TTYLVLDEAD 186 (242)
T ss_dssp CCEEEETTHH
T ss_pred ccEEEEeCHH
Confidence 9888865443
No 194
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.52 E-value=0.29 Score=51.70 Aligned_cols=16 Identities=38% Similarity=0.281 Sum_probs=14.4
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.||+|+|||.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999866
No 195
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.48 E-value=6.7 Score=33.70 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=55.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHc------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----ccCCCCCC
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----ARGLDVPN 411 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~-l-----~~GiDip~ 411 (475)
+.+++|.||+++-++++++.+.+ +..+..++|+.+..+... .+.++..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 34899999999999888877643 567889999988765543 345577899999951 1 23467888
Q ss_pred CCEEEecCCC
Q 011908 412 VDLVELVVLE 421 (475)
Q Consensus 412 ~~~vI~~~~~ 421 (475)
++++|+-.+.
T Consensus 159 ~~~lViDEah 168 (220)
T 1t6n_A 159 IKHFILDECD 168 (220)
T ss_dssp CCEEEEESHH
T ss_pred CCEEEEcCHH
Confidence 8888875444
No 196
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.33 E-value=0.41 Score=42.49 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=33.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
|.-+++.|++|+|||..++-.+.+...+. +..++++. ++.-..++.+.+....
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--------~~~v~~~s-~E~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--------GEPGVFVT-LEERARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--------CCCEEEEE-SSSCHHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--------CCCceeec-ccCCHHHHHHHHHHcC
Confidence 35589999999999976655454443321 33466655 3444666666666543
No 197
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.16 E-value=0.79 Score=42.48 Aligned_cols=25 Identities=12% Similarity=0.293 Sum_probs=18.6
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+.++++.||+|+|||..+. ++...+
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHH
Confidence 4689999999999997653 344444
No 198
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.71 E-value=0.65 Score=44.15 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.||+|+|||.++
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999865
No 199
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.48 E-value=2.3 Score=40.24 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=27.3
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
.+.-+++.|++|+|||..++..+...... +..++++..-.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeCCC
Confidence 44568999999999998775555444322 44577777543
No 200
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.39 E-value=2.5 Score=35.12 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=54.8
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++++.-+..+++.+.+. ++.+..++|+.+...+...+ .. ...|+|+| +.+ ...+++..+++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~Gid~~~~~~ 105 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVC-ARGIDVKQVTI 105 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSC-CTTTCCTTEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cch-hcCCCcccCCE
Confidence 568999999999999999999876 57788888988766654333 33 48999999 333 24566778888
Q ss_pred EEEec
Q 011908 249 VVLDE 253 (475)
Q Consensus 249 vIiDE 253 (475)
||.-+
T Consensus 106 Vi~~d 110 (175)
T 2rb4_A 106 VVNFD 110 (175)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88533
No 201
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.36 E-value=2.2 Score=40.21 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=26.6
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCC
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt 182 (475)
..+.-+++.|++|+|||..++..+...... +..++++.--
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyi~~E 98 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAA---------GGIAAFIDAE 98 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECC
Confidence 345668999999999998665554444321 4557777643
No 202
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.04 E-value=3.1 Score=35.95 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=54.4
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++++.-+..+++.+.+. ++.+..++|+.+...+...+ .. ..+|+|+| +.+. .++++.++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidi~~v~~ 102 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAA-RGLDIPQVDL 102 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTT-CSSSCCCBSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhh-cCCCCccCcE
Confidence 557999999999999999999887 67788889998866654333 33 38899999 4443 4567788888
Q ss_pred EEE
Q 011908 249 VVL 251 (475)
Q Consensus 249 vIi 251 (475)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 203
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.76 E-value=1.8 Score=36.50 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=45.4
Q ss_pred CCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHH---HHhh-CCCCEEEEccHHHHHHHHhCCCCCCCcc
Q 011908 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM---RALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~ 247 (475)
.+.+++|.++++.-+..+++.|... ++.+..+.|+.+...+. ..+. ....|+|+| +.+. .++++.+++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gldi~~~~ 116 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISNVK 116 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSBS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhh-cCCCcccCC
Confidence 3567999999999999999999886 67788888887654432 2222 348999999 4443 345677788
Q ss_pred EEEEe
Q 011908 248 FVVLD 252 (475)
Q Consensus 248 ~vIiD 252 (475)
+||.=
T Consensus 117 ~VI~~ 121 (185)
T 2jgn_A 117 HVINF 121 (185)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 87763
No 204
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.52 E-value=0.8 Score=39.72 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=27.2
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 121 ~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.-+..|..++..+..|.-+.+.||.|||||...
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 345567788999988888999999999999743
No 205
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=86.38 E-value=4.8 Score=35.68 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=53.8
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-c----cc--cCCCCC
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-V----AA--RGLDVP 410 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~----l~--~GiDip 410 (475)
.+.+++|.+|+++-++.+++.+.+ +..+..++|+.+..+....+ .+..+|+|+|. . +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 345799999999999888877643 57888999998866544332 25679999994 1 22 457788
Q ss_pred CCCEEEecCCC
Q 011908 411 NVDLVELVVLE 421 (475)
Q Consensus 411 ~~~~vI~~~~~ 421 (475)
+++++|+-.+.
T Consensus 186 ~~~~lViDEah 196 (249)
T 3ber_A 186 ALKYLVMDEAD 196 (249)
T ss_dssp TCCEEEECSHH
T ss_pred ccCEEEEcChh
Confidence 88888864443
No 206
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.17 E-value=3.2 Score=34.41 Aligned_cols=74 Identities=11% Similarity=0.200 Sum_probs=54.7
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++++.-+..+++.+... ++.+..++|+.+..++...+ .. ...|+|+| +.+. ..+++.++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gldi~~~~~ 102 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLFG-RGMDIERVNI 102 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-----SCCS-TTCCGGGCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC-----Cchh-cCcchhhCCE
Confidence 557999999999999999999886 67788888988766554333 23 48999999 3332 3556777888
Q ss_pred EEEecc
Q 011908 249 VVLDEA 254 (475)
Q Consensus 249 vIiDE~ 254 (475)
||.-+.
T Consensus 103 Vi~~d~ 108 (172)
T 1t5i_A 103 AFNYDM 108 (172)
T ss_dssp EEESSC
T ss_pred EEEECC
Confidence 886443
No 207
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.61 E-value=2.9 Score=36.71 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=46.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc-CCCCCC
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR-GLDVPN 411 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~l~~-GiDip~ 411 (475)
.+.+++|.+|+++-+..+.+.+.+ +..+..++|+..... ....+..+..+|+|+|. .+.. .++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 456899999999999988888754 356777788765332 33455667789999993 3333 366778
Q ss_pred CCEEEecCC
Q 011908 412 VDLVELVVL 420 (475)
Q Consensus 412 ~~~vI~~~~ 420 (475)
++++|+-.+
T Consensus 174 ~~~lViDEa 182 (237)
T 3bor_A 174 IKMFVLDEA 182 (237)
T ss_dssp CCEEEEESH
T ss_pred CcEEEECCc
Confidence 888876433
No 208
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.42 E-value=5.2 Score=36.60 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCChhHHhHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~ 155 (475)
.++-+.+.|+.|+|||.++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 344567789999999976533
No 209
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.28 E-value=1.5 Score=46.92 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.8
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||.++
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 46999999999999755
No 210
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.21 E-value=5.9 Score=34.52 Aligned_cols=74 Identities=14% Similarity=0.248 Sum_probs=51.0
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----cc--CCCCC
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VA----AR--GLDVP 410 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~l----~~--GiDip 410 (475)
.+.+++|.+|+++-++.+.+.+.+ ++.+..++|+.+..+....+ +..+|+|+|. .+ .. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 467899999999999988888754 36788899987655443322 4678999995 22 22 36777
Q ss_pred CCCEEEecCCC
Q 011908 411 NVDLVELVVLE 421 (475)
Q Consensus 411 ~~~~vI~~~~~ 421 (475)
+++++|+-.+.
T Consensus 171 ~~~~lViDEah 181 (236)
T 2pl3_A 171 DLQMLVLDEAD 181 (236)
T ss_dssp TCCEEEETTHH
T ss_pred cccEEEEeChH
Confidence 88888764443
No 211
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.18 E-value=0.92 Score=44.31 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=30.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 187 (475)
...++++.|+||||||... ..++..+.. .+..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~--------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL--------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH--------CCCcEEEEeCCCchhH
Confidence 3468999999999999864 444444443 1556777788777754
No 212
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.81 E-value=2.4 Score=39.40 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILD 159 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~ 159 (475)
+.-+++.|++|+|||..++..+.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999766544443
No 213
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.69 E-value=1.5 Score=40.16 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.||+|+|||.++
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999755
No 214
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.35 E-value=3.3 Score=42.13 Aligned_cols=59 Identities=8% Similarity=0.145 Sum_probs=51.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHH--hcCCCcEEEEec
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAF--RDGRFNILIATD 401 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F--~~g~~~vLvaT~ 401 (475)
..+.+||++|+++-++.....+.. ++.+..++|+++..++..++..+ ..+..+|+++|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 467999999999999888888854 68899999999999999988888 578899999997
No 215
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=84.32 E-value=11 Score=31.91 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=60.6
Q ss_pred ccCcchhhH-HHHHHHhh------cCCCcEEEEeCChHHHHHHHHHHHc---cCCeeeecCCCCHHHHHHHHHHHhcCCC
Q 011908 325 TSMYEKPSI-IGQLITEH------AKGGKCIVFTQTKRDADRLAHAMAK---SYNCEPLHGDISQSQRERTLSAFRDGRF 394 (475)
Q Consensus 325 ~~~~~k~~~-l~~~~~~~------~~~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~lh~~~~~~~r~~~~~~F~~g~~ 394 (475)
.....|... +..++... ..+.+++|.||+++-++.+.+.+.+ ...+..++|+.+..+....+. +..
T Consensus 46 ~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 121 (207)
T 2gxq_A 46 RTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGA 121 (207)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCC
T ss_pred CCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCC
Confidence 344555543 33344433 2456899999999999999888854 367888999887654443332 247
Q ss_pred cEEEEec-----ccc-cCCCCCCCCEEEecCCC
Q 011908 395 NILIATD-----VAA-RGLDVPNVDLVELVVLE 421 (475)
Q Consensus 395 ~vLvaT~-----~l~-~GiDip~~~~vI~~~~~ 421 (475)
+|+|+|. .+. ..+++.+++.+|+-.+.
T Consensus 122 ~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 122 DAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp SEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred CEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 8999995 222 34677888888864443
No 216
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.25 E-value=6.4 Score=39.59 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=59.5
Q ss_pred CCceEEEEeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHHHHHh---h-CCCCEEEEccHHHHHHHHhCCCCCCCc
Q 011908 172 RNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNALNLSEV 246 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~---~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l 246 (475)
.+.+++|.++|+.-+..+++.+.+.++ ++.+..++|+.....+...+ . ...+|+|+| +.+. ..+++.++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~-~GiDip~v 411 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGA-RGMDFPNV 411 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGT-SSCCCTTC
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhh-cCCCcccC
Confidence 366899999999999999999998765 78888889988866654333 2 348999999 4443 56778889
Q ss_pred cEEEEeccc
Q 011908 247 QFVVLDEAD 255 (475)
Q Consensus 247 ~~vIiDE~H 255 (475)
++||.-..-
T Consensus 412 ~~VI~~~~p 420 (563)
T 3i5x_A 412 HEVLQIGVP 420 (563)
T ss_dssp CEEEEESCC
T ss_pred CEEEEECCC
Confidence 888865543
No 217
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.80 E-value=1.3 Score=42.96 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=23.2
Q ss_pred HHHHHHhhhhhc--CCcEEEEccCCCChhHHhHHHHHHHH
Q 011908 124 PIQKAVLEPAMQ--GRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 124 ~~Q~~~i~~i~~--~~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
+.+..++..+.. +.-+++.||||||||... .+++..+
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l 191 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 191 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhc
Confidence 445555655543 334789999999999643 4444443
No 218
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.74 E-value=3.1 Score=36.29 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----ccCCCCC
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----ARGLDVP 410 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~-l-----~~GiDip 410 (475)
.+.+++|.||+++-++++.+.+.+ +..+..++|+.+..++...+ ...+|+|+|.- + ...++..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 356899999999999988887753 46788899998876654433 35789999962 2 2345677
Q ss_pred CCCEEEecC
Q 011908 411 NVDLVELVV 419 (475)
Q Consensus 411 ~~~~vI~~~ 419 (475)
+++++|+-.
T Consensus 166 ~~~~lViDE 174 (230)
T 2oxc_A 166 SIRLFILDE 174 (230)
T ss_dssp GCCEEEESS
T ss_pred cCCEEEeCC
Confidence 888887643
No 219
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.59 E-value=0.27 Score=44.81 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=27.8
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHH-HHHhhhhh--cCCcEEEEccCCCChhHHh
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (475)
+..+|++++-.+.+++.+.+.-. .++. .+++..+- -.+.+++.||+|||||..+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567777766777777765321 1111 22333221 1234999999999999744
No 220
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.48 E-value=5 Score=38.38 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=55.7
Q ss_pred CCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---h-CCCCEEEEccHHHHHHHHhCCCCCCCcc
Q 011908 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~ 247 (475)
.+.+++|.++++.-+..+++.+.+. ++.+..++|+.+..++...+ . ...+|+|+| +.+. ..+++.+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidip~v~ 346 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISNVK 346 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-TTSCCCCEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-cCCCcccCC
Confidence 4678999999999999999999886 57788888988866554333 2 348999999 6554 466788888
Q ss_pred EEEE
Q 011908 248 FVVL 251 (475)
Q Consensus 248 ~vIi 251 (475)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 221
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.35 E-value=5.2 Score=33.95 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=51.2
Q ss_pred CCcEEEEeCChHHHHHHHHHHHc------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-c----ccc-CCCCCC
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-V----AAR-GLDVPN 411 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~----l~~-GiDip~ 411 (475)
+.+++|.||+++-++.+.+.+.+ +..+..++|+.+..+.... ..+..+|+|+|. . +.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 45899999999999888887743 4678889999876554322 235678999996 2 222 346778
Q ss_pred CCEEEecC
Q 011908 412 VDLVELVV 419 (475)
Q Consensus 412 ~~~vI~~~ 419 (475)
++++|+-.
T Consensus 147 ~~~lViDE 154 (206)
T 1vec_A 147 VQMIVLDE 154 (206)
T ss_dssp CCEEEEET
T ss_pred CCEEEEEC
Confidence 88887643
No 222
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.22 E-value=3.7 Score=41.09 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc-cc-----cCCCCCCCCEE
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-AA-----RGLDVPNVDLV 415 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~-l~-----~GiDip~~~~v 415 (475)
..+.++|++|+++-++.....+.. +..+..+||..+..++..++..+..|..+|+++|.- +. ..++..++..+
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 357899999999999988888854 688999999999999999999999999999999952 21 12333456666
Q ss_pred Ee
Q 011908 416 EL 417 (475)
Q Consensus 416 I~ 417 (475)
|+
T Consensus 144 Vi 145 (523)
T 1oyw_A 144 AV 145 (523)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 223
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.14 E-value=3 Score=36.24 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-c-----cccCCCCCCC
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-V-----AARGLDVPNV 412 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~-----l~~GiDip~~ 412 (475)
.+.+++|.+|+++-++++.+.+.+ +..+..++|+.+..++... +. ...+|+|+|. . ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 467899999999999998888854 5678888888765544332 23 3478999995 1 1235678889
Q ss_pred CEEEecCCC
Q 011908 413 DLVELVVLE 421 (475)
Q Consensus 413 ~~vI~~~~~ 421 (475)
+++|+-.+.
T Consensus 169 ~~lViDEah 177 (228)
T 3iuy_A 169 TYLVIDEAD 177 (228)
T ss_dssp CEEEECCHH
T ss_pred eEEEEECHH
Confidence 988864443
No 224
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=83.11 E-value=1.4 Score=43.86 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=22.4
Q ss_pred HHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 124 ~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..-..+...+..+.++++.||+|+|||..+
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 333444555667889999999999999754
No 225
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=83.09 E-value=3.1 Score=39.25 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhH
Q 011908 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 186 (475)
+.-+++.||+|+|||..++..+.... . .+..++++..-..+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~-~--------~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ-K--------MGGVAAFIDAEHALD 102 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESSCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEecccccc
Confidence 45689999999999975544333322 2 245577876654443
No 226
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=83.05 E-value=3 Score=45.73 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=58.0
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHc-----cC----CeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCCC-CC
Q 011908 342 AKGGKCIVFTQTKRDADRLAHAMAK-----SY----NCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VAARGLD-VP 410 (475)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~l~~-----~~----~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~l~~GiD-ip 410 (475)
..+.+++|.+|+++-+.++++.+.. +. .+..+||+.+..++.+..+.+.+ .+|+|+|. .+..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 3567999999999999988888753 34 78899999999888777777776 89999995 2222222 56
Q ss_pred CCCEEEecCC
Q 011908 411 NVDLVELVVL 420 (475)
Q Consensus 411 ~~~~vI~~~~ 420 (475)
+++++|+-.+
T Consensus 175 ~l~~lViDEa 184 (1054)
T 1gku_B 175 HFDFIFVDDV 184 (1054)
T ss_dssp CCSEEEESCH
T ss_pred cCCEEEEeCh
Confidence 7888876443
No 227
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=82.85 E-value=12 Score=38.49 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=59.9
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH---hh-CCCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---LD-YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++|+.-+..+++.|.+. ++.+..++|+....++... +. ...+|+||| +.+ ..++++.++++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l-~~GlDip~v~l 516 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLL-REGLDIPEVSL 516 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCC-STTCCCTTEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chh-hCCcccCCCCE
Confidence 678999999999999999999987 5677777888776555443 23 348999999 433 35677889999
Q ss_pred EEEeccccc
Q 011908 249 VVLDEADQM 257 (475)
Q Consensus 249 vIiDE~H~~ 257 (475)
||+-+.+..
T Consensus 517 Vi~~d~d~~ 525 (661)
T 2d7d_A 517 VAILDADKE 525 (661)
T ss_dssp EEETTTTCC
T ss_pred EEEeCcccc
Confidence 999998764
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.40 E-value=0.94 Score=40.73 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+.++++.|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3568999999999999755
No 229
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.37 E-value=5 Score=35.49 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=51.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCCCCCCC
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VA-----ARGLDVPNV 412 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~l-----~~GiDip~~ 412 (475)
+.+++|.||+++-++++.+.+.. ...+..++|+.+..+....+ ....+|+|+|. .+ ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 46899999999999988877743 36677888888755443322 34678999995 22 124677888
Q ss_pred CEEEecCC
Q 011908 413 DLVELVVL 420 (475)
Q Consensus 413 ~~vI~~~~ 420 (475)
+++|+-.+
T Consensus 176 ~~lViDEa 183 (253)
T 1wrb_A 176 KYIVLDEA 183 (253)
T ss_dssp CEEEEETH
T ss_pred CEEEEeCH
Confidence 88876443
No 230
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.05 E-value=2.3 Score=39.43 Aligned_cols=54 Identities=13% Similarity=-0.068 Sum_probs=34.1
Q ss_pred hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHh
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~ 196 (475)
+..|.-+++.|++|+|||..++..+.+.... +..++++. .+.-..|+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---------g~~vl~~s-lE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHS-LEMGKKENIKRLIVT 118 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---------TCEEEEEE-SSSCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEE-CCCCHHHHHHHHHHH
Confidence 3445568999999999997665555444422 34566665 345556666666544
No 231
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=82.00 E-value=6 Score=35.34 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=53.1
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc--cCCCCC
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAA--RGLDVP 410 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~l~--~GiDip 410 (475)
.+.+++|.+|+++-++++.+.+.+ +..+..+.|+......... +..| .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 467899999999999998888854 3567788888876554433 3334 78999994 122 257788
Q ss_pred CCCEEEecCC
Q 011908 411 NVDLVELVVL 420 (475)
Q Consensus 411 ~~~~vI~~~~ 420 (475)
++.++|+-.+
T Consensus 201 ~l~~lViDEa 210 (262)
T 3ly5_A 201 NLQCLVIDEA 210 (262)
T ss_dssp TCCEEEECSH
T ss_pred cCCEEEEcCh
Confidence 8988876433
No 232
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=81.98 E-value=2.1 Score=40.80 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.||+|+|||.++
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 357999999999999765
No 233
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=81.81 E-value=5.5 Score=37.69 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=54.9
Q ss_pred CCcEEEEeCChHHHHHHHHHHHc------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCCCCCC
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VA-----ARGLDVPN 411 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~l-----~~GiDip~ 411 (475)
+.+++|.||+++-++++++.+.+ +..+..++|+.+..+... .+.++..+|+|+|. .+ ...++..+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 55899999999999988877743 577889999988765544 34557789999995 22 23467788
Q ss_pred CCEEEecCC
Q 011908 412 VDLVELVVL 420 (475)
Q Consensus 412 ~~~vI~~~~ 420 (475)
+++||+-.+
T Consensus 153 ~~~vViDEa 161 (391)
T 1xti_A 153 IKHFILDEC 161 (391)
T ss_dssp CSEEEECSH
T ss_pred cCEEEEeCH
Confidence 888886443
No 234
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.45 E-value=1.6 Score=41.84 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=28.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
.+.+.++.|+||||||...-..+.... ..+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---------~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---------MQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---------TTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---------HCCCEEEEEeCCcC
Confidence 456899999999999975544333332 22566888888765
No 235
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=81.26 E-value=10 Score=38.35 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=59.3
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCC-CCceEEEEcCCChhHHHHHh---h-CCCCEEEEccHHHHHHHHhCCCCCCCcc
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~---~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~ 247 (475)
+.+++|.++|+.-+..+++.+.+.++ ++.+..++|+.....+...+ . ....|+|+| +.+. ..+++.+++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~-~GiDip~v~ 361 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGA-RGMDFPNVH 361 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGT-SSCCCTTCC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhh-cCCCcccCC
Confidence 66899999999999999999998765 77888889988766554333 2 348999999 4443 467788899
Q ss_pred EEEEeccc
Q 011908 248 FVVLDEAD 255 (475)
Q Consensus 248 ~vIiDE~H 255 (475)
+||.-..-
T Consensus 362 ~VI~~~~p 369 (579)
T 3sqw_A 362 EVLQIGVP 369 (579)
T ss_dssp EEEEESCC
T ss_pred EEEEcCCC
Confidence 88876544
No 236
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=80.88 E-value=3.6 Score=45.67 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=36.6
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCC
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~ 198 (475)
.+|.|..|||||.+.+--+...+.+. ..+.+++++||.. +..+..+++....+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~------~~~~~il~lVP~q-~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA------PFGKPIIFLVPDQ-MTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC------TTSSCEEEECCGG-GHHHHHHHHTCCSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC------CCCCcEEEEecCc-ccHHHHHHHHHhhh
Confidence 47899999999987766665555331 2356799999976 45556666666543
No 237
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.19 E-value=0.81 Score=39.19 Aligned_cols=19 Identities=21% Similarity=0.051 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.|++|||||.++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567999999999999865
No 238
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=80.14 E-value=0.7 Score=43.20 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.5
Q ss_pred hhhhcCCcEEEEccCCCChhHHh
Q 011908 131 EPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+..+.++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456789999999999999755
No 239
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=80.08 E-value=1.9 Score=42.98 Aligned_cols=40 Identities=23% Similarity=0.091 Sum_probs=26.2
Q ss_pred HHHHHHCCCCCCcHHHHHHhh-hhhcCCcEEEEccCCCChhHH
Q 011908 111 VAALARRGISKLFPIQKAVLE-PAMQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 111 ~~~l~~~~~~~l~~~Q~~~i~-~i~~~~~~li~~~tGsGKT~~ 152 (475)
...|.+.|. +++.+...+. .+..+..+++.||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555553 3444444444 345677899999999999963
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.78 E-value=36 Score=31.50 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=34.5
Q ss_pred CccEEEEecccccc-ccCcHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHHhc
Q 011908 245 EVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (475)
Q Consensus 245 ~l~~vIiDE~H~~~-~~~~~~~~~~il~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 298 (475)
..+++++|.+-+.. +......+..+.+.+.++..++++.++........+..+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 34568899887643 2234555666666666677788888887766666555543
No 241
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=79.68 E-value=2.1 Score=37.38 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=18.2
Q ss_pred cEEEEccCCCChhHHhHHHHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
++++.++.|+|||..++-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 588999999999987755444443
No 242
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.65 E-value=1.7 Score=41.15 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
.+..+++.||||||||... -.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL-~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL-AAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhcc
Confidence 3446899999999999643 3444443
No 243
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=79.20 E-value=0.9 Score=37.90 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.6
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-+++.|++|||||.++
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999765
No 244
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=79.06 E-value=0.91 Score=38.16 Aligned_cols=18 Identities=22% Similarity=0.050 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.|++|||||.++
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346899999999999866
No 245
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=78.95 E-value=2.4 Score=36.54 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHhhhhhcC----CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 108 QDIVAALARRGISKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~----~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
..+.+.|+-.++ .+... ...+..+..+ +.+++.||+|+|||..+ .+++..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 456666665554 33333 3444444444 35899999999999755 4444443
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=78.94 E-value=0.87 Score=37.63 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.8
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||.++
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999865
No 247
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=78.91 E-value=5.1 Score=36.79 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=55.6
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---h-CCCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++++.-+..+++.+.+. ++.+..++|+.+...+...+ . ...+|+|+| +.+. ..+++.++++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~-~Gidi~~v~~ 99 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAA-RGLDIPQVDL 99 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTT-CSTTCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhh-cCccccceeE
Confidence 567999999999999999999876 67888889998866654333 2 348999999 4443 4567788888
Q ss_pred EEEecc
Q 011908 249 VVLDEA 254 (475)
Q Consensus 249 vIiDE~ 254 (475)
||.=+.
T Consensus 100 VI~~d~ 105 (300)
T 3i32_A 100 VVHYRM 105 (300)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 885343
No 248
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.90 E-value=8.3 Score=33.16 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=54.3
Q ss_pred eccCcchhhH-HHHHHHhh---cCCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCC
Q 011908 324 ATSMYEKPSI-IGQLITEH---AKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRF 394 (475)
Q Consensus 324 ~~~~~~k~~~-l~~~~~~~---~~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~ 394 (475)
......|... +..++... ..+.+++|.+|+++-++++.+.+.. +..+..++|+.+..+....+ .+.
T Consensus 58 ~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~ 132 (224)
T 1qde_A 58 AQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----RDA 132 (224)
T ss_dssp CCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----TTC
T ss_pred CCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----CCC
Confidence 3444555543 33444433 3456899999999999988887753 46788889987655443322 237
Q ss_pred cEEEEeccc------ccCCCCCCCCEEEecCC
Q 011908 395 NILIATDVA------ARGLDVPNVDLVELVVL 420 (475)
Q Consensus 395 ~vLvaT~~l------~~GiDip~~~~vI~~~~ 420 (475)
+|+|+|.-. ...++..+++++|+-.+
T Consensus 133 ~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 133 QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred CEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 899999521 24567778888876443
No 249
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.79 E-value=1.3 Score=40.87 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+.++++.|++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3467999999999999755
No 250
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.64 E-value=0.88 Score=41.71 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=29.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCCcHHH-HHHhhhh-hcCCcEEEEccCCCChhHHh
Q 011908 98 GLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPA-MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 98 ~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q-~~~i~~i-~~~~~~li~~~tGsGKT~~~ 153 (475)
...|+++.-.+..++.+.+.-. .+.. .+.+..+ ...+.+++.||+|+|||..+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4456666556666666654311 0000 0001111 12467999999999999755
No 251
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.48 E-value=0.96 Score=37.86 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
..+.+++.|++|||||.++
T Consensus 10 ~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 4567999999999999765
No 252
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.12 E-value=1.3 Score=37.18 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++-+.+.||+|||||..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3556889999999999744
No 253
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.00 E-value=1.2 Score=41.73 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.5
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-++|.||||||||.++
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999755
No 254
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=77.99 E-value=1.2 Score=38.23 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++-+++.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345899999999999644
No 255
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.80 E-value=1.1 Score=40.35 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.8
Q ss_pred hhcCCcEEEEccCCCChhHHh
Q 011908 133 AMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~ 153 (475)
+..+.-+.+.||+|||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 445667899999999999643
No 256
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.70 E-value=6.2 Score=37.56 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=55.8
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++++.-+..+++.+.+. +..+..++|+.+..++...+ .. ...|+|+| +.+ ..++++.++++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gidip~~~~ 337 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVC-ARGIDVEQVSV 337 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TSSCCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccc-ccCCCccCCCE
Confidence 567999999999999999999987 56788889988766654333 33 48999999 443 35677888998
Q ss_pred EEEec
Q 011908 249 VVLDE 253 (475)
Q Consensus 249 vIiDE 253 (475)
||.-.
T Consensus 338 Vi~~~ 342 (412)
T 3fht_A 338 VINFD 342 (412)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88433
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=77.55 E-value=1 Score=38.50 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..++-+.+.|++|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667899999999999754
No 258
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.54 E-value=0.98 Score=40.32 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=30.4
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhh--cCCcEEEEccCCCChhHHh
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (475)
+..+|+++.-.+.....+++.... .. ...++..+- -.+.+++.||+|+|||..+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 445677776666666666543110 00 112333321 1234899999999999744
No 259
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.51 E-value=12 Score=35.75 Aligned_cols=19 Identities=16% Similarity=-0.155 Sum_probs=15.2
Q ss_pred CcEEEEccCCCChhHHhHH
Q 011908 137 RDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~ 155 (475)
.-+.|.|++|||||..+..
T Consensus 179 ei~~I~G~sGsGKTTLl~~ 197 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHT 197 (400)
T ss_dssp SEEEEEESTTSSHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHH
Confidence 4478999999999975543
No 260
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=77.46 E-value=1.5 Score=37.71 Aligned_cols=18 Identities=28% Similarity=0.266 Sum_probs=14.9
Q ss_pred cEEEEccCCCChhHHhHH
Q 011908 138 DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~ 155 (475)
-.++.|++|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 478999999999986543
No 261
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=77.37 E-value=1.4 Score=41.73 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.5
Q ss_pred hhhcCCcEEEEccCCCChhHH
Q 011908 132 PAMQGRDMIGRARTGTGKTLA 152 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~ 152 (475)
.+..|..+++.|+||||||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 345778899999999999963
No 262
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.24 E-value=1 Score=40.34 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|+|||..+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999755
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.99 E-value=0.81 Score=38.69 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..+.-+.+.|++|||||..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34556899999999999744
No 264
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.97 E-value=9.7 Score=35.43 Aligned_cols=74 Identities=14% Similarity=0.297 Sum_probs=54.6
Q ss_pred CCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCcc
Q 011908 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~ 247 (475)
.+.+++|.++++.-+..+++.+.+. +..+..++|+.+...+...+ .. ..+|+|+| +.+.. .+++.+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~-Gid~~~~~ 308 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMSR-GIDVNDLN 308 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHHH-HCCCSCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCCcccCC
Confidence 3567999999999999999999887 56788888888766554332 23 47999999 44433 45677788
Q ss_pred EEEEec
Q 011908 248 FVVLDE 253 (475)
Q Consensus 248 ~vIiDE 253 (475)
+||.-.
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 887543
No 265
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.90 E-value=1.2 Score=37.62 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.|++|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3467999999999999865
No 266
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=76.81 E-value=14 Score=38.02 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=59.1
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH---hhC-CCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---LDY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++|+.-+..+++.|.+. ++.+..++|+.....+... +.. ..+|+||| +.+ ..++++.++++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~v~l 510 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPEVSL 510 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTTEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCCCCE
Confidence 668999999999999999999987 5677777888776555443 333 38999999 444 34667888999
Q ss_pred EEEeccccc
Q 011908 249 VVLDEADQM 257 (475)
Q Consensus 249 vIiDE~H~~ 257 (475)
||+=+++..
T Consensus 511 VI~~d~d~~ 519 (664)
T 1c4o_A 511 VAILDADKE 519 (664)
T ss_dssp EEETTTTSC
T ss_pred EEEeCCccc
Confidence 998888653
No 267
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=76.70 E-value=1.2 Score=37.60 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.|+.|||||.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999755
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=76.40 E-value=1.3 Score=36.68 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+.+.|+.|||||.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346899999999999754
No 269
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=76.39 E-value=2.8 Score=36.13 Aligned_cols=24 Identities=17% Similarity=-0.155 Sum_probs=17.8
Q ss_pred hcCCcEEEEccCCCChhHHhHHHH
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~ 157 (475)
..+.-+++.|++|+|||..+...+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHH
Confidence 344568999999999997654433
No 270
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.38 E-value=1.4 Score=40.75 Aligned_cols=16 Identities=25% Similarity=0.021 Sum_probs=13.6
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-++|.||||||||..+
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 3688999999999755
No 271
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=76.34 E-value=15 Score=35.84 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=20.1
Q ss_pred hhhhhcCCcEEEEccCCCChhHHhHH
Q 011908 130 LEPAMQGRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 130 i~~i~~~~~~li~~~tGsGKT~~~~~ 155 (475)
+..+.+|+..++.|+.|+|||..+..
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHHHHH
Confidence 33455788899999999999975543
No 272
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=76.15 E-value=7.8 Score=36.55 Aligned_cols=77 Identities=10% Similarity=0.186 Sum_probs=58.2
Q ss_pred CCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCcc
Q 011908 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~ 247 (475)
.+.+++|.++++.-+..+++.+++. +..+..++|+.+..++...+ .. ..+|+|+| +.+ ..++++.+++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gidip~~~ 313 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVL-ARGIDIPTVS 313 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGG-SSSCCCTTEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chh-hcCCCcccCC
Confidence 3568999999999999999999887 56788888988766554333 33 47999999 433 3567788899
Q ss_pred EEEEecccc
Q 011908 248 FVVLDEADQ 256 (475)
Q Consensus 248 ~vIiDE~H~ 256 (475)
+||.-....
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 998765543
No 273
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=76.12 E-value=1.4 Score=40.59 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=13.2
Q ss_pred EEEEccCCCChhHHh
Q 011908 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+++.||||||||..+
T Consensus 13 i~i~GptgsGKt~la 27 (316)
T 3foz_A 13 IFLMGPTASGKTALA 27 (316)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 688999999999755
No 274
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=76.05 E-value=2.3 Score=44.75 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=33.5
Q ss_pred ccCCCccCCCCCHHHHHHHHHCCCCCCc-HHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 96 DEGLDISKLDISQDIVAALARRGISKLF-PIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~l~~~~~~~l~-~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+...|++++.-++.++.|.+.-...+. +.+..-+ .+...+.+|+.||+|||||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 3456688887778888888765322111 1100000 0112246999999999999755
No 275
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=75.70 E-value=34 Score=33.77 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=14.5
Q ss_pred cEEEEccCCCChhHHhHH
Q 011908 138 DMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~ 155 (475)
.+++.|++|+|||.++.-
T Consensus 103 vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478889999999976633
No 276
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=75.50 E-value=1.5 Score=39.22 Aligned_cols=16 Identities=25% Similarity=-0.037 Sum_probs=13.6
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3688999999999765
No 277
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=75.48 E-value=1.2 Score=36.66 Aligned_cols=16 Identities=13% Similarity=-0.172 Sum_probs=13.8
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|+.|||||.++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999865
No 278
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.39 E-value=8 Score=44.22 Aligned_cols=53 Identities=15% Similarity=0.059 Sum_probs=37.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhCCCCc
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~ 201 (475)
+-+.+.||.|||||..++..+.++.. .|..++++.+-.+|.... ++++.-++.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~---------~g~~~~~i~~e~~~~~~~---~~~~Gv~~~ 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHALDPIY---ARKLGVDID 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEECTTSCCCHHH---HHHTTCCGG
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh---------cCCeEEEEecCCCCCHHH---HHHcCCCHH
Confidence 45899999999999887655555442 377789998877766654 555544444
No 279
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=75.19 E-value=4.4 Score=45.02 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=43.5
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHHhhhhc---cCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~~~~~~~---~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
..+|.|..|||||.+..--++..+...... ...-...++|+|+=|+.-|.++.+++.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 469999999999998877777777542100 001123579999999999999988887643
No 280
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=74.98 E-value=3.1 Score=38.11 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCChhHHhHH
Q 011908 136 GRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~~~ 155 (475)
++.+.+.|++|+|||.++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688899999999976543
No 281
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=74.95 E-value=1.9 Score=40.73 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=19.2
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.+++|.| ++.-|.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556667776 566899999999865
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=74.93 E-value=55 Score=31.47 Aligned_cols=19 Identities=21% Similarity=0.073 Sum_probs=14.6
Q ss_pred CcEEEEccCCCChhHHhHH
Q 011908 137 RDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~ 155 (475)
.-+.+.|+.|+|||.++..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3467789999999976543
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=74.84 E-value=1.3 Score=36.84 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.6
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3688999999999755
No 284
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=74.80 E-value=1.8 Score=37.28 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+.-+++.||+|+|||.++
T Consensus 8 g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 445889999999999754
No 285
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=74.64 E-value=3.2 Score=37.90 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=17.7
Q ss_pred hhcCCcEEEEccCCCChhHHhHH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~ 155 (475)
+..|.-+++.|++|+|||..+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 44566789999999999975543
No 286
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=74.52 E-value=1.4 Score=41.21 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.6
Q ss_pred hhcCCcEEEEccCCCChhH
Q 011908 133 AMQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~ 151 (475)
+..+..+.+.|+||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4567889999999999996
No 287
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=74.24 E-value=2.1 Score=39.78 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=18.8
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.+++|.+ ++.-|.||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445567776 677899999999865
No 288
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=74.02 E-value=2.3 Score=39.92 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=20.3
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5667778877 566899999999876
No 289
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=73.97 E-value=3 Score=39.52 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=26.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 183 (475)
.+.-+++.|++|+|||..++..+...... +..++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---------g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---------GGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---------CCeEEEEECCC
Confidence 34568999999999997665544443321 44577776543
No 290
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=73.96 E-value=5.3 Score=38.94 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=46.7
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
+.+++|.+|++.-+.++++.+++. ++++..++|... ......+.. ..+|+|+| +.+. ..+++. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~R-~~~~~~F~~g~~~vLVaT-----~v~e-~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA--GKSVVVLNRKTF-EREYPTIKQKKPDFILAT-----DIAE-MGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT--TCCEEECCSSSC-C--------CCCSEEEES-----SSTT-CCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecchhH-HHHHhhhcCCCceEEEEC-----Chhh-eeeccC-ceEEE
Confidence 567999999999999999999987 577788777433 223333333 48999999 5443 355677 88877
No 291
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=73.86 E-value=1.7 Score=37.34 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..++-+++.|++|||||..+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 34567899999999999754
No 292
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.86 E-value=1.4 Score=38.03 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|+.|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999866
No 293
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.60 E-value=2 Score=36.66 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=14.6
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999744
No 294
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=73.54 E-value=2.1 Score=40.20 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=18.1
Q ss_pred hhhhhcCCc--EEEEccCCCChhHHh
Q 011908 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 130 i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
+..+++|.+ ++.-|.||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344566766 567899999999865
No 295
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=73.50 E-value=2.9 Score=37.61 Aligned_cols=44 Identities=20% Similarity=0.106 Sum_probs=29.9
Q ss_pred HHHHHHHHHCCCCCCcHHH-HHHhhhhhcCC-----cEEEEccCCCChhHHhH
Q 011908 108 QDIVAALARRGISKLFPIQ-KAVLEPAMQGR-----DMIGRARTGTGKTLAFG 154 (475)
Q Consensus 108 ~~l~~~l~~~~~~~l~~~Q-~~~i~~i~~~~-----~~li~~~tGsGKT~~~~ 154 (475)
..+.+.|+-.++. +.+ ..++..+++++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4677778777763 444 33355555543 48999999999998663
No 296
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=73.39 E-value=2.3 Score=39.99 Aligned_cols=25 Identities=24% Similarity=0.624 Sum_probs=20.4
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6677778877 566899999999876
No 297
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=73.33 E-value=1.5 Score=37.92 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|+.|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999865
No 298
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=73.32 E-value=1.4 Score=40.62 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=14.4
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.||+|+|||.++
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5899999999999765
No 299
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=73.30 E-value=2 Score=36.61 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|.-+.+.||+|||||..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4556889999999999754
No 300
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=72.93 E-value=1.6 Score=35.97 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=15.1
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+++++.|..|||||.++
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47899999999999866
No 301
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=72.92 E-value=3.1 Score=36.68 Aligned_cols=76 Identities=17% Similarity=0.380 Sum_probs=49.7
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc---CCCC
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR---GLDV 409 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~l~~---GiDi 409 (475)
.+.+++|.+|+++-+..+.+.+.+ +..+..++|+..... .......+..+|+|+|. .+.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 355899999999999999888854 355666665532211 11122346678999994 1112 4788
Q ss_pred CCCCEEEecCCC
Q 011908 410 PNVDLVELVVLE 421 (475)
Q Consensus 410 p~~~~vI~~~~~ 421 (475)
.++.++|+-.+.
T Consensus 174 ~~~~~lViDEah 185 (245)
T 3dkp_A 174 ASVEWLVVDESD 185 (245)
T ss_dssp TTCCEEEESSHH
T ss_pred ccCcEEEEeChH
Confidence 899988875443
No 302
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=72.66 E-value=2.3 Score=40.85 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=18.1
Q ss_pred hhhhhcCCc--EEEEccCCCChhHHh
Q 011908 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 130 i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
+..++.|.+ ++.-|.||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345567766 566899999999865
No 303
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.63 E-value=1.9 Score=40.02 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.||||||||..+
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999765
No 304
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=72.48 E-value=2.5 Score=39.42 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=20.3
Q ss_pred HHhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
..+..+++|.+ ++.-|.||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666778877 567899999999865
No 305
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=72.41 E-value=2.5 Score=39.89 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=18.3
Q ss_pred hhhhhcCCc--EEEEccCCCChhHHh
Q 011908 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 130 i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
+..++.|.+ ++.-|.||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445567776 567899999999865
No 306
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=72.36 E-value=12 Score=35.18 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=51.9
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc-----c-ccCCCCCC
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-----A-ARGLDVPN 411 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~-----l-~~GiDip~ 411 (475)
.+.+++|.||+++-++++.+.+.+ +..+..++|+.+..+....+. ..+|+|+|.- + ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456999999999999888887743 467888999988766554443 3679999941 1 22455677
Q ss_pred CCEEEecC
Q 011908 412 VDLVELVV 419 (475)
Q Consensus 412 ~~~vI~~~ 419 (475)
+++||+-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 88887643
No 307
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=72.34 E-value=2.4 Score=40.22 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=18.6
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445567776 566899999999865
No 308
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=72.32 E-value=0.88 Score=40.95 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.8
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.||+|+|||..+
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46899999999999765
No 309
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=72.28 E-value=2.5 Score=39.72 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=18.2
Q ss_pred hhhhhcCCc--EEEEccCCCChhHHh
Q 011908 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 130 i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
+..+++|.+ ++.-|.||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344567776 567899999999865
No 310
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=72.27 E-value=2.6 Score=40.52 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=20.2
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667778877 566899999999876
No 311
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=72.11 E-value=6.3 Score=35.53 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=20.1
Q ss_pred hhhhcCCcEEEEccCCCChhHHhHHHH
Q 011908 131 EPAMQGRDMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~~~~~ 157 (475)
..+..+.-+++.|++|+|||..+...+
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 345566779999999999997654443
No 312
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=72.10 E-value=5.5 Score=38.84 Aligned_cols=51 Identities=14% Similarity=-0.059 Sum_probs=32.0
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
.|.-+++.|++|+|||..++-.+.+.... |..++++. .+.-..|+..++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---------g~~vl~fS-lEms~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHS-LEMGKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---------TCEEEEEC-SSSCTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---------CCEEEEEE-CCCCHHHHHHHHHH
Confidence 44558999999999997665555554422 44566665 34444555555543
No 313
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=72.00 E-value=1.3 Score=36.86 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|.-+.+.|++|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445789999999999744
No 314
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=71.99 E-value=2.5 Score=39.78 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=18.8
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3445567776 567899999999875
No 315
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=71.99 E-value=1.3 Score=37.23 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.|+.|||||.++
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446889999999999865
No 316
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=71.98 E-value=2.6 Score=39.60 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=18.6
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.+++|.+ ++.-|.||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445567776 567899999999865
No 317
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.96 E-value=2 Score=42.15 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+++++.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 357999999999999766
No 318
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=71.91 E-value=2.6 Score=39.79 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=18.2
Q ss_pred hhhhhcCCc--EEEEccCCCChhHHh
Q 011908 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 130 i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
+..+++|.+ ++.-|.||||||.+.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 445567776 567899999999865
No 319
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=71.84 E-value=2.6 Score=39.88 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=18.6
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445567776 567899999999865
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=71.74 E-value=2 Score=36.23 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.3
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+.+.||+|||||.+.
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999744
No 321
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=71.70 E-value=11 Score=35.78 Aligned_cols=73 Identities=11% Similarity=0.256 Sum_probs=55.0
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---h-CCCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
..+++|.++++.-+..+++.+.+. ++.+..++|+.+..++...+ . ....|+|+| +.+ ..++++.++++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gidi~~v~~ 347 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVW-ARGLDVPQVSL 347 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGG-SSSCCCTTEEE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chh-hCcCCcccCCE
Confidence 457999999999999999999886 56788888988766554333 2 348899999 433 35677888888
Q ss_pred EEEec
Q 011908 249 VVLDE 253 (475)
Q Consensus 249 vIiDE 253 (475)
||.-.
T Consensus 348 Vi~~~ 352 (410)
T 2j0s_A 348 IINYD 352 (410)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88533
No 322
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=71.64 E-value=2.5 Score=39.83 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=18.9
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
++..+++|.+ ++.-|.||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4555667777 566799999999865
No 323
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=71.63 E-value=9.4 Score=36.19 Aligned_cols=73 Identities=10% Similarity=0.177 Sum_probs=54.5
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++++.-+..+++.+.+. +..+..++|+.+...+...+ .. ...|+|+| +.+ ...+++.++++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-----~~~-~~Gidip~~~~ 329 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-----DLL-TRGIDIQAVNV 329 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-----SCS-SSSCCCTTEEE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-----Ccc-ccCCCccCCCE
Confidence 568999999999999999999887 56778888888766554333 23 47999999 333 34567788888
Q ss_pred EEEec
Q 011908 249 VVLDE 253 (475)
Q Consensus 249 vIiDE 253 (475)
||.-+
T Consensus 330 Vi~~~ 334 (400)
T 1s2m_A 330 VINFD 334 (400)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88543
No 324
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=71.61 E-value=2.6 Score=39.88 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=18.9
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4455667776 566899999999865
No 325
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=71.59 E-value=1.9 Score=36.82 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+.+.|+.|||||.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556899999999999754
No 326
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=71.57 E-value=15 Score=35.52 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=53.2
Q ss_pred eEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 175 LCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 175 ~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
+++|.++++.-+..+++.+.+. ++.+..++|+....++...+ .. ...|+|+| +.+ ...+++.++++||
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~v~-~rGlDi~~v~~VI 373 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-----SVA-SRGLDIKNIKHVI 373 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-----GGG-TSSCCCTTCCEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc-----hhh-hCCCCcccCCEEE
Confidence 3999999999999999999886 67788888888766554333 23 48999999 443 3567788888888
Q ss_pred E
Q 011908 251 L 251 (475)
Q Consensus 251 i 251 (475)
.
T Consensus 374 ~ 374 (434)
T 2db3_A 374 N 374 (434)
T ss_dssp E
T ss_pred E
Confidence 5
No 327
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=71.55 E-value=2.5 Score=39.79 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=19.4
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.++.+++|.+ ++.-|.||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556677877 566799999999875
No 328
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=71.48 E-value=2.1 Score=38.76 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=31.0
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhh--cCCcEEEEccCCCChhHHh
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (475)
+..+|+++.-.+..+..+.+.... .. ...++..+- -.+.+++.||+|||||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 455677776667777666643110 00 112233221 1234899999999999744
No 329
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.46 E-value=1.6 Score=36.26 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+.+.|+.|||||.++
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345889999999999755
No 330
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=71.42 E-value=1.8 Score=35.55 Aligned_cols=17 Identities=12% Similarity=-0.113 Sum_probs=14.3
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.|+.|||||.++
T Consensus 1 m~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVG 17 (168)
T ss_dssp CEEEEESCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35789999999999765
No 331
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.33 E-value=2.1 Score=40.51 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999765
No 332
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=71.08 E-value=2.5 Score=39.94 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=18.9
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455667776 567899999999865
No 333
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=70.96 E-value=2.2 Score=39.90 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-++|.||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999765
No 334
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=70.83 E-value=1.9 Score=41.05 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..+..+++.||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35566899999999999643
No 335
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=70.79 E-value=2.7 Score=36.46 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..|.-+.+.||+|||||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45667899999999999643
No 336
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=70.75 E-value=2.8 Score=36.07 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=21.4
Q ss_pred CcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 122 l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+..++... .+..++.+++.|+.|||||..+
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 345555542 3445667889999999999755
No 337
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=70.73 E-value=2 Score=35.63 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=14.2
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|+.|||||.++
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6889999999999865
No 338
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=70.68 E-value=2.4 Score=36.51 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.3
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
|.+++.||+||||+..+
T Consensus 1 M~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQA 17 (206)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999765
No 339
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=70.53 E-value=1.5 Score=41.20 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 346999999999999755
No 340
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=70.52 E-value=2.6 Score=35.99 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 4566899999999999743
No 341
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=70.52 E-value=18 Score=34.86 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=52.8
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEc--------CCChhHHHHHh---h-CCCCEEEEccHHHHHHHHhCC
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG--------GTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNA 240 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g--------~~~~~~~~~~~---~-~~~~Ilv~T~~~l~~~l~~~~ 240 (475)
+.+++|.++++.-+..+++.+.+. ++.+..+.| +.+..++...+ . ....|+|+| +.+ ..+
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T-----~~~-~~G 432 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT-----SVG-EEG 432 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-----GGG-GGG
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC-----Ccc-ccC
Confidence 667999999999999999999987 677788888 55544443222 2 347999999 433 345
Q ss_pred CCCCCccEEEEeccc
Q 011908 241 LNLSEVQFVVLDEAD 255 (475)
Q Consensus 241 ~~~~~l~~vIiDE~H 255 (475)
+++..+++||+-+..
T Consensus 433 ldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 433 LDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGSTTCCEEEESSCC
T ss_pred CCchhCCEEEEeCCC
Confidence 677788888865544
No 342
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=70.25 E-value=2.7 Score=39.92 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=18.4
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445567776 567899999999865
No 343
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=70.21 E-value=1.9 Score=36.79 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.6
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-+++.|+.|||||.++
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999755
No 344
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=70.11 E-value=2.8 Score=39.92 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=18.2
Q ss_pred hhhhhcCCc--EEEEccCCCChhHHh
Q 011908 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 130 i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
+..+++|.+ ++.-|.||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 445567766 567899999999875
No 345
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=69.93 E-value=4.7 Score=37.11 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.1
Q ss_pred cEEEEccCCCChhHHhH
Q 011908 138 DMIGRARTGTGKTLAFG 154 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~ 154 (475)
-+++.|++|+|||.++.
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 47889999999997653
No 346
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=69.79 E-value=5.2 Score=36.78 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+.-+.+.||+|||||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345788999999999754
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=69.74 E-value=2.3 Score=35.54 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.6
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.|++|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999866
No 348
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=69.53 E-value=2.3 Score=36.04 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.6
Q ss_pred CcEEEEccCCCChhHH
Q 011908 137 RDMIGRARTGTGKTLA 152 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~ 152 (475)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999974
No 349
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=69.48 E-value=2.7 Score=40.05 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=16.9
Q ss_pred hhhcCCc--EEEEccCCCChhHHh
Q 011908 132 PAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 132 ~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+++|.+ ++.-|.||||||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 3456766 566899999999865
No 350
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=69.31 E-value=1.9 Score=36.38 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.4
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.|++|||||.++
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999865
No 351
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=69.30 E-value=2.3 Score=35.06 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.5
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.|+.|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999865
No 352
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=69.22 E-value=2.6 Score=39.96 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=19.6
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..++.|.+ ++.-|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566677877 566899999999875
No 353
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=69.21 E-value=5.5 Score=39.51 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 011908 135 QGRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~ 154 (475)
++.++++.|.||||||.+.-
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHH
Confidence 34689999999999997543
No 354
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=69.02 E-value=2 Score=36.13 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=14.4
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-+++.|+.|||||.++
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999865
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=68.95 E-value=2.3 Score=35.84 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.|+.|||||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456899999999999865
No 356
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=68.93 E-value=2.9 Score=35.08 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.3
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+.+.||.|||||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999743
No 357
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=68.85 E-value=2.2 Score=35.96 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3678999999999754
No 358
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.77 E-value=2.9 Score=40.24 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=20.4
Q ss_pred HHhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 128 ~~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
..+..++.|.+ ++.-|.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35667778877 566899999999865
No 359
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=68.76 E-value=3.2 Score=40.35 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=18.3
Q ss_pred hhhhhcCCc--EEEEccCCCChhHHh
Q 011908 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 130 i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
+..+++|.| ++.-|.||||||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 444567776 566899999999876
No 360
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=68.73 E-value=2.1 Score=36.98 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|+.|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999765
No 361
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=68.61 E-value=2.2 Score=37.23 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.|++|||||.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999755
No 362
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=68.58 E-value=5.3 Score=33.35 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.|+.|||||..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 445889999999999765
No 363
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=68.52 E-value=3.1 Score=35.68 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=16.3
Q ss_pred hhhcCCcEEEEccCCCChhHHh
Q 011908 132 PAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+..|.-+.+.||+|||||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5667777899999999999743
No 364
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=68.49 E-value=3.5 Score=39.18 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=19.5
Q ss_pred HhhhhhcCCc--EEEEccCCCChhHHh
Q 011908 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 129 ~i~~i~~~~~--~li~~~tGsGKT~~~ 153 (475)
.+..+++|.+ ++.-|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5566677877 566799999999865
No 365
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.37 E-value=4.7 Score=48.37 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHh----hhhhcCCcEEEEccCCCChhHHhH
Q 011908 106 ISQDIVAALARRGISKLFPIQKAVL----EPAMQGRDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 106 l~~~l~~~l~~~~~~~l~~~Q~~~i----~~i~~~~~~li~~~tGsGKT~~~~ 154 (475)
+.+.+.+.+.+.++ .+++.+..-+ +.+.....+++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34456666666776 5666653322 233445679999999999998763
No 366
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=68.33 E-value=2.5 Score=36.04 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=14.6
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.|+.|||||.++
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999865
No 367
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=68.32 E-value=14 Score=38.92 Aligned_cols=70 Identities=11% Similarity=-0.006 Sum_probs=51.7
Q ss_pred cCCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----ccC----
Q 011908 342 AKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATDV-A-----ARG---- 406 (475)
Q Consensus 342 ~~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~~-l-----~~G---- 406 (475)
..+.+++|.|||++-|.+.++.+.. ++.+..+.|+++..++.... ..+|+|+|+- + ..+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~ 186 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFS 186 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhcc
Confidence 3577899999999999888877743 58899999999987555432 2789999962 2 222
Q ss_pred ---CCCCCCCEEEe
Q 011908 407 ---LDVPNVDLVEL 417 (475)
Q Consensus 407 ---iDip~~~~vI~ 417 (475)
++..++.++|.
T Consensus 187 ~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 187 PEERVQRKLHYALV 200 (853)
T ss_dssp GGGCCCCSCCEEEE
T ss_pred HhHhcccCCcEEEE
Confidence 45677887775
No 368
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=68.29 E-value=2.2 Score=39.00 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999755
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=68.20 E-value=2.5 Score=35.97 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++.+++.|+.|||||.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999865
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=68.00 E-value=2.5 Score=36.64 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.|+.|||||.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999865
No 371
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.53 E-value=3.1 Score=40.96 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=15.1
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.++++.||+|+|||.++
T Consensus 202 ~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp CEEEEESCTTTTTHHHH
T ss_pred CCeEEECCCCCCHHHHH
Confidence 57999999999999765
No 372
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=67.32 E-value=2.8 Score=40.20 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.2
Q ss_pred EEEEccCCCChhHHh
Q 011908 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
++|.||||||||..+
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 678999999999765
No 373
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=67.17 E-value=9.6 Score=37.03 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=15.1
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+++++.||+|+|||..+
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 57999999999999765
No 374
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=67.14 E-value=2.5 Score=35.93 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|+.|||||..+
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999755
No 375
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=67.08 E-value=2.3 Score=35.94 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
..+-+++.|++|||||.++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456899999999999765
No 376
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=67.02 E-value=2.3 Score=35.67 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|+.|||||..+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999755
No 377
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=66.68 E-value=3.2 Score=38.72 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46999999999999754
No 378
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=66.48 E-value=2.2 Score=36.58 Aligned_cols=22 Identities=18% Similarity=-0.068 Sum_probs=16.5
Q ss_pred hhhcCCcEEEEccCCCChhHHh
Q 011908 132 PAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+.-+.+.|++|||||.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 3444456789999999999754
No 379
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=66.30 E-value=11 Score=38.25 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=26.0
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEEEEe
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l~~S 283 (475)
..+-+++++||.=.-+|......+.+.+..+.++. .+++.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~i 535 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVI 535 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEE
Confidence 34567899999987777666666677776664433 33333
No 380
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=66.08 E-value=3.2 Score=42.23 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=14.3
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999744
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=66.06 E-value=2.5 Score=35.44 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|+.|||||.++
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999865
No 382
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=69.44 E-value=1.2 Score=36.88 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=49.2
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh---hC-CCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+++|.++++.-+..+++.+... ++.+..++|+.+...+...+ .. ...|+|+| +.+. .++++.++++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gid~~~~~~ 101 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAA-RGIDIPDVSH 101 (170)
Confidence 457999999999999999888876 56677778887655443332 22 37899999 4433 3445666666
Q ss_pred EEEe
Q 011908 249 VVLD 252 (475)
Q Consensus 249 vIiD 252 (475)
||.-
T Consensus 102 Vi~~ 105 (170)
T 2yjt_D 102 VFNF 105 (170)
Confidence 6653
No 383
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=65.85 E-value=2.3 Score=35.38 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=11.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++-+++.|+.|||||.++
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999865
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=65.84 E-value=2.9 Score=36.25 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=14.8
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+++.|+.|||||.++
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999865
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=65.52 E-value=2.9 Score=36.22 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+++.|++|||||.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356899999999999765
No 386
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=65.46 E-value=4.6 Score=35.96 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+.+.|++|||||.++
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3788999999999999765
No 387
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=65.46 E-value=3.2 Score=35.30 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+.-+.+.|+.|||||.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4456889999999999755
No 388
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=65.46 E-value=32 Score=32.51 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=59.1
Q ss_pred cCcchhhH-HHHHHHhhc---CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcE
Q 011908 326 SMYEKPSI-IGQLITEHA---KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNI 396 (475)
Q Consensus 326 ~~~~k~~~-l~~~~~~~~---~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~v 396 (475)
....|... +..++.... .+.+++|.+|+++-++.+.+.+.. +..+...+|+..... ..+.+..+..+|
T Consensus 86 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i 162 (414)
T 3eiq_A 86 SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHI 162 (414)
T ss_dssp SCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSE
T ss_pred CCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCE
Confidence 33445433 333443332 467899999999999988888754 356677777765443 344556678899
Q ss_pred EEEec-----ccc-cCCCCCCCCEEEecCC
Q 011908 397 LIATD-----VAA-RGLDVPNVDLVELVVL 420 (475)
Q Consensus 397 LvaT~-----~l~-~GiDip~~~~vI~~~~ 420 (475)
+|+|. .+. ..++..++++||+-.+
T Consensus 163 iv~T~~~l~~~l~~~~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 163 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 192 (414)
T ss_dssp EEECHHHHHHHHHHTSSCSTTCCEEEECSH
T ss_pred EEECHHHHHHHHHcCCcccccCcEEEEECH
Confidence 99994 222 2356677887776433
No 389
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=65.42 E-value=2.4 Score=36.21 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++-+++.|+.|||||..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 345889999999999765
No 390
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=65.34 E-value=6.6 Score=36.40 Aligned_cols=18 Identities=28% Similarity=0.315 Sum_probs=14.4
Q ss_pred CcEEEEccCCCChhHHhH
Q 011908 137 RDMIGRARTGTGKTLAFG 154 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~ 154 (475)
+-+.+.|+.|+|||.++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347888999999997653
No 391
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=65.25 E-value=2.6 Score=35.09 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++.+.+.|+.|||||.++
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 455789999999999755
No 392
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=65.23 E-value=2.7 Score=36.44 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.4
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+.+.|++|||||.++
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999765
No 393
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=65.01 E-value=21 Score=37.53 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=52.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----c-------
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VA-----A------- 404 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~l-----~------- 404 (475)
.+.+++|.|++++-|.+.++.+.. ++.+..+.|+++..+|.... ..+|+++|+ -+ .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 567899999999999988887744 68899999999987665442 268999995 22 1
Q ss_pred cCCCCCCCCEEEe
Q 011908 405 RGLDVPNVDLVEL 417 (475)
Q Consensus 405 ~GiDip~~~~vI~ 417 (475)
..++...++++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 2356678888875
No 394
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=64.97 E-value=2.9 Score=35.13 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.6
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+.+.|+.|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999765
No 395
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=64.91 E-value=2.8 Score=35.75 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+.+.|+.|||||.++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999755
No 396
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=64.59 E-value=2.4 Score=37.08 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=12.6
Q ss_pred hhcCCcEEEEccCCCChhHHh
Q 011908 133 AMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~ 153 (475)
+..|.-+.+.||+|||||.++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345566889999999999754
No 397
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=64.48 E-value=9.3 Score=37.01 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=46.8
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHh-hCCCCEEEEccHHHHHHHHhCCCCCCCccEE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~v 249 (475)
+.+++|.+|++.-++.+++.+.+. +..+..++|+... .....+ ....+|+|+| +.+.. .+++. ...|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~r~-~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRKTFE-SEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTTHH-HHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCccHH-HHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 457999999999999999999987 6778887776332 222223 3348999999 55544 44554 4444
No 398
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=64.47 E-value=12 Score=38.55 Aligned_cols=68 Identities=10% Similarity=0.146 Sum_probs=48.6
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
+.+++|.+|++.-++++++.|++. ++.+..++|.. .......+.. ..+|+|+| +.+.. .+++. +++||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRKS-YDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSSS-HHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChHH-HHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcEEE
Confidence 568999999999999999999887 67788887742 2222333333 48999999 55543 45566 77766
No 399
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=64.39 E-value=3.1 Score=36.78 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.|+.|||||.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346899999999999865
No 400
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=64.39 E-value=3.8 Score=38.46 Aligned_cols=57 Identities=9% Similarity=-0.038 Sum_probs=30.8
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh-HHHHHHHHHHh
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL-AKQVEKEFHES 196 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L-a~Q~~~~l~~~ 196 (475)
.-+++.|++|+|||..++..+...... . ...+.+..++++.-...+ ..++.+.+..+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~--~-~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLP--G-AGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSC--B-TTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcc--c-ccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 457999999999997664444332211 0 000135567777654432 34444444443
No 401
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=64.33 E-value=7.8 Score=38.91 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=18.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
.++++.|.||||||.+.-..++..+
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999975544344333
No 402
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=64.31 E-value=3 Score=35.52 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.8
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|+.|||||.++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999755
No 403
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=64.29 E-value=3.1 Score=35.62 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++-+++.|+.|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3456899999999999865
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=64.23 E-value=3.3 Score=36.33 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
.+.+++.|++|||||.++
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999765
No 405
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=64.10 E-value=2.8 Score=36.00 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+.-+.|.|++|||||..+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999643
No 406
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=64.08 E-value=3 Score=35.63 Aligned_cols=16 Identities=25% Similarity=0.077 Sum_probs=13.5
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+.+.|+.|||||.++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999755
No 407
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=63.71 E-value=3.1 Score=36.21 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.8
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|+.|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999765
No 408
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=63.70 E-value=6.1 Score=38.35 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=16.1
Q ss_pred CcEEEEccCCCChhHHhHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~ 157 (475)
..+++.|++|+|||.++.-.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368899999999997664433
No 409
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=63.52 E-value=14 Score=35.93 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=48.1
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhhC-CCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
+.+++|.+|++.-++++++.+.+. ++.+..+.+.... .....+.. ..+|+|+| +.+. ..+++.+ .+||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~-~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISE-MGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGG-SSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc--CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHH-hCcCCCC-CEEE
Confidence 447999999999999999999886 5677777765542 22333333 48999999 5554 4556666 6665
No 410
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.51 E-value=3.3 Score=33.51 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=12.9
Q ss_pred cEEEEccCCCChhHH
Q 011908 138 DMIGRARTGTGKTLA 152 (475)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (475)
-.++.||+|+|||.+
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999975
No 411
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=63.21 E-value=3.5 Score=35.87 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.|.-+.+.||.|||||...
T Consensus 15 ~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556889999999999743
No 412
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=63.19 E-value=3 Score=35.71 Aligned_cols=17 Identities=24% Similarity=-0.031 Sum_probs=13.8
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.-+.+.|++|||||..+
T Consensus 7 ~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34778999999999754
No 413
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=63.01 E-value=3.4 Score=35.39 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
++-+++.|+.|||||.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999865
No 414
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=62.91 E-value=97 Score=30.23 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=52.7
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHH---h-hCCCCEEEEccHHHHHHHHhCCCCCCCccE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---L-DYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~ 248 (475)
+.+.++++.+..-+..+++.|.+.. .++..+.|+.+....... + ....+|+|+|+..+ ..++++.++++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~--~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~-----~~GiDip~v~~ 419 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEY--DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF-----STGISVKNLHH 419 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTC--SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH-----HHSCCCCSEEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcC--CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh-----hcccccccCcE
Confidence 4455666666777777888887764 377778888875554332 2 23479999995544 44677889999
Q ss_pred EEEecccc
Q 011908 249 VVLDEADQ 256 (475)
Q Consensus 249 vIiDE~H~ 256 (475)
||+.....
T Consensus 420 vi~~~~~~ 427 (510)
T 2oca_A 420 VVLAHGVK 427 (510)
T ss_dssp EEESSCCC
T ss_pred EEEeCCCC
Confidence 99988773
No 415
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=62.17 E-value=9.8 Score=31.48 Aligned_cols=23 Identities=13% Similarity=-0.078 Sum_probs=15.7
Q ss_pred cEEEEccCCCChhHHhHHHHHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
-+.+.|+.|||||... ..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhh
Confidence 3678999999999643 3344443
No 416
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=61.95 E-value=3.4 Score=36.99 Aligned_cols=16 Identities=25% Similarity=0.164 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 6 lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5789999999999765
No 417
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=61.68 E-value=3.3 Score=35.89 Aligned_cols=20 Identities=20% Similarity=-0.051 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..|.-+.+.||+|||||..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 34556899999999999744
No 418
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=61.68 E-value=3.6 Score=34.68 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.2
Q ss_pred EEEEccCCCChhHHh
Q 011908 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+.+.|+.|||||.++
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999866
No 419
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=61.66 E-value=7.8 Score=35.53 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+.-+.+.|++|||||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3445789999999999754
No 420
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=61.63 E-value=6.2 Score=40.26 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=18.8
Q ss_pred hhhhcCCcEEEEccCCCChhHHh
Q 011908 131 EPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 131 ~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
..+..+..+++.||+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34556788999999999999755
No 421
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=61.45 E-value=7.6 Score=35.88 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=11.9
Q ss_pred EEEEccCCCChhH
Q 011908 139 MIGRARTGTGKTL 151 (475)
Q Consensus 139 ~li~~~tGsGKT~ 151 (475)
+++.|+.|||||.
T Consensus 7 ~~i~G~~GaGKTT 19 (318)
T 1nij_A 7 TLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEESSSSSCHH
T ss_pred EEEEecCCCCHHH
Confidence 6889999999996
No 422
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=61.14 E-value=14 Score=37.92 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=50.7
Q ss_pred CCceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhhCCCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
.+.+++|.++|+.-++++++.|++. ++.+..++|+....+. ...+.+|+|+| +.+.+. +++. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~VI 461 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEEE
Confidence 3668999999999999999999886 6788888998875542 23446999999 666553 3354 77766
No 423
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=60.98 E-value=4.7 Score=37.11 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 011908 134 MQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~ 153 (475)
..|.-+.|.||+|||||...
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35677899999999999643
No 424
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.96 E-value=20 Score=43.85 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=30.2
Q ss_pred CHHHHHHHHHCCCCCCcHHHHH-Hhh---hhhcCCcEEEEccCCCChhHHh
Q 011908 107 SQDIVAALARRGISKLFPIQKA-VLE---PAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 107 ~~~l~~~l~~~~~~~l~~~Q~~-~i~---~i~~~~~~li~~~tGsGKT~~~ 153 (475)
...+.+.+.+.+. ++.+.+.. ++. .+.....+++.||||||||.++
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~ 923 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW 923 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH
Confidence 4556666667777 56666533 322 2223345899999999999876
No 425
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=60.61 E-value=6 Score=33.17 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHh
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 185 (475)
+++.|++|||||.-+.- +.. . +..+++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~-------~-~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIG-------D-APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHC-------S-CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHH-----HHh-------c-CCCeEEEecCCCC
Confidence 58899999999964421 211 1 3347788775543
No 426
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=60.57 E-value=9.3 Score=34.94 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=14.6
Q ss_pred CcEEEEccCCCChhHHhHH
Q 011908 137 RDMIGRARTGTGKTLAFGI 155 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~ 155 (475)
.-+.+.|++|+|||.++..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEEECSSCSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3467789999999976543
No 427
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=60.43 E-value=9.8 Score=43.52 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=30.2
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHH
Q 011908 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 184 (475)
-.+..+++.|++|||||..++..+.+.+.. +..++|+.-...
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~---------G~~vlYI~te~~ 73 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEHA 73 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhC---------CCceEEEEecCc
Confidence 345679999999999998776666665533 556888775443
No 428
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=60.35 E-value=5.1 Score=33.29 Aligned_cols=16 Identities=19% Similarity=-0.031 Sum_probs=13.3
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-.++.|++|||||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4688999999999643
No 429
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=60.08 E-value=3.7 Score=36.13 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCChhH
Q 011908 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45668899999999996
No 430
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.03 E-value=4.9 Score=42.27 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=17.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~ 161 (475)
.++++.||+|+|||.++ -.+...+
T Consensus 202 ~~vLL~G~pGtGKT~la-~~la~~l 225 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIA-EGLAQQI 225 (758)
T ss_dssp CEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCeEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999866 3333333
No 431
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=60.03 E-value=12 Score=34.23 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=55.7
Q ss_pred cCcchhhH-HHHHHHhhc---CCCcEEEEeCChHHHHHHHHHHHc------cCCeeeecCCCCHHHHHHHHHHHhcCCCc
Q 011908 326 SMYEKPSI-IGQLITEHA---KGGKCIVFTQTKRDADRLAHAMAK------SYNCEPLHGDISQSQRERTLSAFRDGRFN 395 (475)
Q Consensus 326 ~~~~k~~~-l~~~~~~~~---~~~~~lVf~~~~~~~~~l~~~l~~------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~ 395 (475)
....|... +..++.... .+.+++|.+|+++-+.++...+.. +..+...+|+....... ....+
T Consensus 140 TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 212 (300)
T 3fmo_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQ 212 (300)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCS
T ss_pred CCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCC
Confidence 44455433 334444432 234799999999999988777643 35666777765432211 35568
Q ss_pred EEEEecc-c-----c-cCCCCCCCCEEEecCCC
Q 011908 396 ILIATDV-A-----A-RGLDVPNVDLVELVVLE 421 (475)
Q Consensus 396 vLvaT~~-l-----~-~GiDip~~~~vI~~~~~ 421 (475)
|+|+|.- + . ..+++.++.++|+-.++
T Consensus 213 IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 213 IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp EEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred EEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 9999952 1 2 35778899988875443
No 432
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=59.97 E-value=15 Score=36.61 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----ccC-C-CCCC
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VA----ARG-L-DVPN 411 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~l----~~G-i-Dip~ 411 (475)
+.+++|.||+++-+......+.+ ++.+..+||+.+..++...+. +..+|+|+|. .+ ..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999988888777744 688999999987655433222 1368999995 22 223 3 6778
Q ss_pred CCEEEecCC
Q 011908 412 VDLVELVVL 420 (475)
Q Consensus 412 ~~~vI~~~~ 420 (475)
+++||+-.+
T Consensus 131 ~~~vViDEa 139 (556)
T 4a2p_A 131 FTLMIFDEC 139 (556)
T ss_dssp CSEEEEETG
T ss_pred CCEEEEECC
Confidence 888876443
No 433
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=59.93 E-value=3.7 Score=34.74 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+.+.|++|||||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999855
No 434
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=59.46 E-value=28 Score=36.82 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=52.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----c-------
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VA-----A------- 404 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~l-----~------- 404 (475)
.+.+++|.|++.+-|.+.++.+.. ++.+.++.|+++..+|.... ..+|+++|+ -+ .
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~ 224 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSL 224 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccH
Confidence 567899999999999888877754 68899999999987665543 268999995 22 1
Q ss_pred cCCCCCCCCEEEe
Q 011908 405 RGLDVPNVDLVEL 417 (475)
Q Consensus 405 ~GiDip~~~~vI~ 417 (475)
..++..+++++|+
T Consensus 225 ~~l~lr~l~~lIV 237 (922)
T 1nkt_A 225 DDLVQRGHHYAIV 237 (922)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhccCCCCEEEE
Confidence 1356677887775
No 435
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=59.44 E-value=34 Score=35.94 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=54.0
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHh---------CCCCceEEEEcCCChhHHHHHhh--------C-CCCEEEEccHHHHH
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHES---------APSLDTICVYGGTPISHQMRALD--------Y-GVDAVVGTPGRVID 234 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~---------~~~~~~~~~~g~~~~~~~~~~~~--------~-~~~Ilv~T~~~l~~ 234 (475)
+.++||.+|++.-+.+.++.+.+. ..++.+..++|+.+..++...+. . ...|+|+| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 568999999999999999888752 24677888899988766654442 2 36899999 6
Q ss_pred HHHhCCCCCCCccEEEE
Q 011908 235 LIKRNALNLSEVQFVVL 251 (475)
Q Consensus 235 ~l~~~~~~~~~l~~vIi 251 (475)
.+.. .+++.++.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 5554 456778887763
No 436
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=59.41 E-value=4 Score=36.05 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
...+.+.|+.|||||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346899999999999744
No 437
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=59.35 E-value=5.4 Score=34.64 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.1
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+-+++.||+||||+..+
T Consensus 30 kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEEEECCTTCCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34788999999999765
No 438
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=59.28 E-value=7.5 Score=45.17 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=33.8
Q ss_pred hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 190 (475)
+..+.++++.|++|||||..+...+.+.+ ..|..++|+. ..++..+.+
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~---------k~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ---------REGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH---------TTTCCEEEEC-TTSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH---------HcCCeEEEEE-ccccHHHHH
Confidence 33557899999999999988766666665 2367788876 444445555
No 439
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=59.23 E-value=4.3 Score=37.60 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=17.2
Q ss_pred cCCcEEEEccCCCChhHHhHHHH
Q 011908 135 QGRDMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~~~~~ 157 (475)
.+..+++.||+|+|||..+...+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 44557999999999997664433
No 440
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=59.04 E-value=3.1 Score=37.01 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+++.|++|||||..+
T Consensus 34 ~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEESCGGGTTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999755
No 441
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=58.63 E-value=7.6 Score=33.37 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=48.7
Q ss_pred CCcEEEEeCChHHHHHHHHHHHc---------cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc-CCC
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAK---------SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-----VAAR-GLD 408 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~---------~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~l~~-GiD 408 (475)
+.+++|.||+++-++++.+.+.+ +..+..++|+.+..+..+. + .+..+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 56899999999999888877643 3567788888754432211 1 24578999994 2222 356
Q ss_pred CCCCCEEEecCC
Q 011908 409 VPNVDLVELVVL 420 (475)
Q Consensus 409 ip~~~~vI~~~~ 420 (475)
..+++++|+-.+
T Consensus 148 ~~~~~~lViDEa 159 (219)
T 1q0u_A 148 VHTAHILVVDEA 159 (219)
T ss_dssp GGGCCEEEECSH
T ss_pred cCcceEEEEcCc
Confidence 778888776433
No 442
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=58.56 E-value=13 Score=33.27 Aligned_cols=51 Identities=6% Similarity=-0.063 Sum_probs=32.1
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHHhC
Q 011908 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~~~ 197 (475)
..+++.|++|+|||..++..+.+.+.+ |-.+++++- .+-..++.+.+..+.
T Consensus 22 s~~li~g~p~~~~~~l~~qfl~~g~~~---------Ge~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 22 LILIHEEDASSRGKDILFYILSRKLKS---------DNLVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp EEEEEECSGGGCHHHHHHHHHHHHHHT---------TCEEEEEEC-SSCHHHHHHHHHHTT
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHHC---------CCcEEEEEE-eCCHHHHHHHHHHcC
Confidence 457888899999995444444444422 666777665 444566666766654
No 443
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=58.53 E-value=6.2 Score=37.21 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=15.2
Q ss_pred cCCc--EEEEccCCCChhHHh
Q 011908 135 QGRD--MIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~--~li~~~tGsGKT~~~ 153 (475)
.|.+ ++.-|.||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3666 577899999999865
No 444
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=58.51 E-value=5.9 Score=39.34 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=32.8
Q ss_pred hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHHH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~~ 195 (475)
+..+.-+++.|++|+|||..++-.+.+.. . ..+..++++.- +.-..|+..++..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a-~-------~~g~~vl~~s~-E~s~~~l~~r~~~ 292 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWG-T-------AMGKKVGLAML-EESVEETAEDLIG 292 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHT-T-------TSCCCEEEEES-SSCHHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHH-H-------hcCCcEEEEec-cCCHHHHHHHHHH
Confidence 33445689999999999976654444433 1 11445666653 4445666666543
No 445
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=58.44 E-value=4.4 Score=34.38 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.3
Q ss_pred EEEEccCCCChhHHh
Q 011908 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+.+.|..|||||.++
T Consensus 15 IgltG~~GSGKSTva 29 (192)
T 2grj_A 15 IGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999866
No 446
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=58.28 E-value=3.9 Score=43.32 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=29.2
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhhcCCcEEEEccCCCChhHHh
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~~~~~~li~~~tGsGKT~~~ 153 (475)
+...|+++.-.+.+++.+.+.-.......+.-.-..+..+..+++.||+|+|||..+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHH
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHH
Confidence 344555555555566666543211111000000001223467999999999999754
No 447
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=58.09 E-value=4.2 Score=35.82 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.0
Q ss_pred hcCCcEEEEccCCCChhH
Q 011908 134 MQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (475)
..|.-+.+.||.|||||.
T Consensus 29 ~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 345668899999999996
No 448
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=58.04 E-value=6.6 Score=33.18 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=24.9
Q ss_pred CCCccEEEEeccccc--cccCcHHHHHHHHHhCCCCCcEEEEeeec
Q 011908 243 LSEVQFVVLDEADQM--LSVGFAEDVEVILERLPQNRQSMMFSATM 286 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~--~~~~~~~~~~~il~~~~~~~~~l~~SAT~ 286 (475)
..+.+++|+||+..+ .+..|...+..++... ..+++-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 456789999997666 3334666666666532 2244445664
No 449
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=57.69 E-value=21 Score=37.69 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=47.8
Q ss_pred CCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----ccC-C-CCCC
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VA----ARG-L-DVPN 411 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~l----~~G-i-Dip~ 411 (475)
+++++|.||+++-+......+.+ ++.+..+||+.+...+...+. +..+|+|+|. .+ ..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 67999999999988887776643 688999999987655433222 2478999994 22 222 3 5667
Q ss_pred CCEEEecCC
Q 011908 412 VDLVELVVL 420 (475)
Q Consensus 412 ~~~vI~~~~ 420 (475)
+++||+-.+
T Consensus 372 ~~~iViDEa 380 (797)
T 4a2q_A 372 FTLMIFDEC 380 (797)
T ss_dssp CSEEEETTG
T ss_pred CCEEEEECc
Confidence 788886444
No 450
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.58 E-value=4.3 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.6
Q ss_pred hhcCCcEEEEccCCCChhHHh
Q 011908 133 AMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~ 153 (475)
+..++++++.||||||||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 345688999999999999755
No 451
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=57.40 E-value=31 Score=35.71 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=52.6
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCC----------------------------------CceEEEEcCCChhHHHHHh
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPS----------------------------------LDTICVYGGTPISHQMRAL 218 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~----------------------------------~~~~~~~g~~~~~~~~~~~ 218 (475)
+.+++|.+|++.-+.+.++.+.+.... ..+..++|+.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 567999999999999999888875432 2477788888876654333
Q ss_pred h----CCCCEEEEccHHHHHHHHhCCCCCCCccEEEE
Q 011908 219 D----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (475)
Q Consensus 219 ~----~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vIi 251 (475)
. ....|+|+| +.+. ..+++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT-----~~l~-~Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVAT-----PTLA-AGVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEEC-----GGGG-GSSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEEC-----hHHh-cccCCCceEEEEe
Confidence 2 348999999 5444 4566777777654
No 452
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=57.35 E-value=25 Score=37.34 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=43.5
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 011908 343 KGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD 401 (475)
Q Consensus 343 ~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~ 401 (475)
.+.+++|.+++..-|.+.++.+.. ++.+..+.|+++..+|.... ..+|+++|.
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 577899999999999888877754 57899999999987766553 378999995
No 453
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=57.16 E-value=13 Score=36.84 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=50.5
Q ss_pred CCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----ccC-C-CCCC
Q 011908 344 GGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIATD-VA----ARG-L-DVPN 411 (475)
Q Consensus 344 ~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLvaT~-~l----~~G-i-Dip~ 411 (475)
+.+++|+||+++-+......+.+ ++.+..++|+.+...+...+. +..+|+|+|. .+ ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999988887777743 678999999986554432222 2368999995 22 222 3 5667
Q ss_pred CCEEEecCC
Q 011908 412 VDLVELVVL 420 (475)
Q Consensus 412 ~~~vI~~~~ 420 (475)
+++||+-.+
T Consensus 128 ~~~vViDEa 136 (555)
T 3tbk_A 128 FTLMIFDEC 136 (555)
T ss_dssp CSEEEETTG
T ss_pred CCEEEEECc
Confidence 888876443
No 454
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=57.11 E-value=8.1 Score=43.43 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=25.0
Q ss_pred CCCccEEEEeccccccccCcHHHHHHHHHhCCCCCcEE
Q 011908 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280 (475)
Q Consensus 243 ~~~l~~vIiDE~H~~~~~~~~~~~~~il~~~~~~~~~l 280 (475)
+++-+++|+||+=.-+|......+.+.+..+.+++-++
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~i 607 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTI 607 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 45667899999987777665666666665554444333
No 455
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=57.03 E-value=16 Score=34.89 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHhhh---hhcCCcEEEEccCCCChhHHh
Q 011908 127 KAVLEP---AMQGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 127 ~~~i~~---i~~~~~~li~~~tGsGKT~~~ 153 (475)
.++|+. +-.|+.+.+.|++|+|||..+
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 445544 446889999999999999755
No 456
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=56.72 E-value=4.8 Score=34.70 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.8
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+.+.|+.|||||.++
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999755
No 457
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=56.60 E-value=6.5 Score=37.21 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-.++.||+|||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999754
No 458
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=56.49 E-value=4.3 Score=33.24 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=14.6
Q ss_pred hcCCcEEEEccCCCChhH
Q 011908 134 MQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (475)
..|.-+.+.||.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 345568899999999995
No 459
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=56.45 E-value=11 Score=35.37 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.6
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+.+.|++|||||...
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4788999999999754
No 460
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=56.32 E-value=6.7 Score=34.83 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCChhHHh
Q 011908 136 GRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 136 ~~~~li~~~tGsGKT~~~ 153 (475)
+..+.+.|+.|||||.++
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999755
No 461
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=56.06 E-value=5.1 Score=34.70 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.1
Q ss_pred hcCCcEEEEccCCCChhH
Q 011908 134 MQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (475)
..|.-+.+.||.|||||.
T Consensus 33 ~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp ETTCCEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 356678899999999996
No 462
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=55.91 E-value=4.9 Score=34.23 Aligned_cols=16 Identities=19% Similarity=-0.031 Sum_probs=13.6
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+.+.|+.|||||..+
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999754
No 463
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=55.81 E-value=8 Score=33.02 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=13.2
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-.++.|++|+|||.+.
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3688999999999653
No 464
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=55.72 E-value=8.3 Score=32.06 Aligned_cols=15 Identities=40% Similarity=0.299 Sum_probs=12.7
Q ss_pred cEEEEccCCCChhHH
Q 011908 138 DMIGRARTGTGKTLA 152 (475)
Q Consensus 138 ~~li~~~tGsGKT~~ 152 (475)
-+.+.|+.|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 378899999999963
No 465
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=55.71 E-value=10 Score=36.81 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=15.2
Q ss_pred cEEEEccCCCChhHHhHHHH
Q 011908 138 DMIGRARTGTGKTLAFGIPI 157 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~~~~ 157 (475)
.+++.|+.|+|||.++.-.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46778999999998764433
No 466
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=55.62 E-value=12 Score=28.11 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-cCCeeeecCCCC
Q 011908 334 IGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDIS 378 (475)
Q Consensus 334 l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~lh~~~~ 378 (475)
+...+..+.+..++++||.+-..+...+..|.. ++++..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 333444555678999999998888899888854 678889999853
No 467
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=55.41 E-value=56 Score=29.57 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=56.7
Q ss_pred ccCcchhhHHHHHHHhhcCCCcEEEEeCChHHHHHHHHHHHc-----cCCeeeecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011908 325 TSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-----SYNCEPLHGDISQSQRERTLSAFRDGRFNILIA 399 (475)
Q Consensus 325 ~~~~~k~~~l~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-----~~~~~~lh~~~~~~~r~~~~~~F~~g~~~vLva 399 (475)
.....|.......+.. .+.+++|.+|+++-++.+++.+.+ +..+..++|+.+..+.... +. ..+|+|+
T Consensus 39 ~TGsGKT~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~ 111 (337)
T 2z0m_A 39 KTGSGKTAAYAIPILE--LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVA 111 (337)
T ss_dssp CTTSSHHHHHHHHHHH--HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEE
T ss_pred CCCCcHHHHHHHHHHh--hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEE
Confidence 3444554433333322 267999999999999998888864 3678889999887654432 22 3789999
Q ss_pred ecc-c----c-cCCCCCCCCEEEec
Q 011908 400 TDV-A----A-RGLDVPNVDLVELV 418 (475)
Q Consensus 400 T~~-l----~-~GiDip~~~~vI~~ 418 (475)
|.- + . ..++..++++||+-
T Consensus 112 T~~~l~~~~~~~~~~~~~~~~iViD 136 (337)
T 2z0m_A 112 TPGRLLDLWSKGVIDLSSFEIVIID 136 (337)
T ss_dssp CHHHHHHHHHTTSCCGGGCSEEEEE
T ss_pred CHHHHHHHHHcCCcchhhCcEEEEE
Confidence 942 1 2 23456677777753
No 468
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=55.23 E-value=4.8 Score=38.20 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-.++.|+||+|||.+.
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3689999999999753
No 469
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=55.21 E-value=12 Score=34.64 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=22.7
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~ 180 (475)
.+..+..|.|||.++...+..... .|.+++++-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~---------~G~rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMAR---------SGKKTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---------TTCCEEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHH---------CCCcEEEEe
Confidence 577899999999887655544432 266677665
No 470
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=55.17 E-value=5.2 Score=36.52 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=13.0
Q ss_pred EEEEccCCCChhHHh
Q 011908 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+.|.|++|||||..+
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999755
No 471
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=55.16 E-value=13 Score=34.56 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=23.2
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~ 180 (475)
.++.+..|.|||.++...+.... ..|.+++++-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA---------~~G~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMS---------KVRSSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH---------TSSSCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHH---------HCCCeEEEEE
Confidence 67789999999988755554443 2367777764
No 472
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=54.89 E-value=5 Score=35.10 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.1
Q ss_pred hcCCcEEEEccCCCChhH
Q 011908 134 MQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (475)
..|.-+.+.||.|||||.
T Consensus 32 ~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 356678899999999996
No 473
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=54.81 E-value=5.3 Score=35.41 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+.|.|+.|||||.++
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999865
No 474
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=54.67 E-value=5.1 Score=35.56 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.1
Q ss_pred hcCCcEEEEccCCCChhH
Q 011908 134 MQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (475)
..|.-+.+.||.|||||.
T Consensus 33 ~~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKST 50 (247)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 355668899999999996
No 475
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=54.61 E-value=5 Score=36.31 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCChhH
Q 011908 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999996
No 476
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=54.52 E-value=5.1 Score=39.68 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=29.0
Q ss_pred cCCCccCCCCCHHHHHHHHHCCCCCCcHHHHHHhhhhh--cCCcEEEEccCCCChhHHh
Q 011908 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 97 ~~~~~~~~~l~~~l~~~l~~~~~~~l~~~Q~~~i~~i~--~~~~~li~~~tGsGKT~~~ 153 (475)
+..+|+++.-.+..+..+.+.-.. +. ....+..+- -.+.+++.||+|+|||..+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~--~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LK--NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HH--CGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hh--chhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 345677776566666666542110 00 001111111 1235899999999999755
No 477
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=54.41 E-value=4.8 Score=35.53 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=14.0
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
.-+-+.||.|||||.++
T Consensus 26 ~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34778999999999755
No 478
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=54.36 E-value=6.7 Score=32.68 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.++-+++.|+.|+|||..+
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 3456899999999999755
No 479
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=53.99 E-value=5.4 Score=35.71 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.2
Q ss_pred hcCCcEEEEccCCCChhH
Q 011908 134 MQGRDMIGRARTGTGKTL 151 (475)
Q Consensus 134 ~~~~~~li~~~tGsGKT~ 151 (475)
..|.-+.+.||.|||||.
T Consensus 44 ~~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKST 61 (260)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 356678999999999996
No 480
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=53.74 E-value=5.5 Score=36.28 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999855
No 481
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=53.60 E-value=5.2 Score=34.89 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.3
Q ss_pred cCCcEEEEccCCCChhH
Q 011908 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45567899999999996
No 482
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=53.42 E-value=26 Score=35.65 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=47.2
Q ss_pred CceEEEEeCCHHhHHHHHHHHHHhCCCCceEEEEcCCChhHHHHHhh-CCCCEEEEccHHHHHHHHhCCCCCCCccEEE
Q 011908 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (475)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~l~~~~~~~~~l~~vI 250 (475)
+.+++|.++|+.-++.+++.|.+. ++++..++|... ....+.+. ...+|+|+| +.+.+ .+++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~R-~~~l~~F~~g~~~VLVaT-----dv~~r-GiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS--GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DISEM-GANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTTH-HHHTTHHHHSCCSEEEEC-----GGGGT-TCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc--CCcEEEEChHHH-HHHHHhhcCCCcEEEEEC-----cHHHc-CcccC-ceEEE
Confidence 457999999999999999999987 567777776432 22222232 348999999 55544 44554 66664
No 483
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=53.37 E-value=4.6 Score=42.78 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCChhHHh
Q 011908 135 QGRDMIGRARTGTGKTLAF 153 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~~~ 153 (475)
.+..+++.||+|||||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3467999999999999754
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=53.32 E-value=13 Score=37.11 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=30.4
Q ss_pred hhcCCcEEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeCCHHhHHHHHHHHH
Q 011908 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (475)
Q Consensus 133 i~~~~~~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~l~ 194 (475)
+..|.-+++.|++|+|||..+...+ .... ..|..++++++... ..|+.....
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~-g~~~--------~~G~~vi~~~~ee~-~~~l~~~~~ 329 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFV-ENAC--------ANKERAILFAYEES-RAQLLRNAY 329 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHH-HHHH--------TTTCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH-HHHH--------hCCCCEEEEEEeCC-HHHHHHHHH
Confidence 4455668999999999997543322 2221 12445677776443 345555543
No 485
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=53.12 E-value=6 Score=33.56 Aligned_cols=16 Identities=13% Similarity=0.055 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
.+.+.|+.|||||.++
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999865
No 486
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=53.06 E-value=5.5 Score=41.92 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
+.+|+.||+|||||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999755
No 487
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=52.88 E-value=5.6 Score=35.77 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCChhH
Q 011908 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45568899999999996
No 488
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=52.57 E-value=16 Score=31.25 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=20.5
Q ss_pred EEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEeC
Q 011908 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (475)
Q Consensus 140 li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~P 181 (475)
+.....|+|||.++.--+.... + .|.+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la-~--------~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAK-A--------AGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHH-H--------TTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHH-H--------CCCCEEEEcc
Confidence 4455689999987754443332 1 2667887644
No 489
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=52.55 E-value=5.7 Score=35.99 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=14.4
Q ss_pred cEEEEccCCCChhHHhH
Q 011908 138 DMIGRARTGTGKTLAFG 154 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~~ 154 (475)
-+.+.|+.|||||.++-
T Consensus 77 iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998663
No 490
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=52.42 E-value=5.8 Score=35.42 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCChhH
Q 011908 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999996
No 491
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=52.41 E-value=4 Score=33.93 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=13.0
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
-+.+.|++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999754
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=52.35 E-value=11 Score=37.66 Aligned_cols=31 Identities=32% Similarity=0.294 Sum_probs=21.8
Q ss_pred hhhcCCcEEEEccCCCChhHHhHHHHHHHHH
Q 011908 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKII 162 (475)
Q Consensus 132 ~i~~~~~~li~~~tGsGKT~~~~~~~l~~~~ 162 (475)
.+..|.-+++.|++|||||..+...++..+.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3445677999999999999866554344443
No 493
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=52.20 E-value=12 Score=36.85 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=13.0
Q ss_pred EEEEccCCCChhHHh
Q 011908 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+.+.|++|||||...
T Consensus 296 I~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCcccHHHHH
Confidence 688999999999754
No 494
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=52.13 E-value=6.4 Score=34.58 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.5
Q ss_pred CcEEEEccCCCChhHHh
Q 011908 137 RDMIGRARTGTGKTLAF 153 (475)
Q Consensus 137 ~~~li~~~tGsGKT~~~ 153 (475)
..+.+.||+|||||.++
T Consensus 10 ~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999765
No 495
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=52.07 E-value=6 Score=35.44 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.3
Q ss_pred cCCcEEEEccCCCChhH
Q 011908 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45567899999999996
No 496
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=52.02 E-value=6 Score=34.91 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCChhH
Q 011908 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999996
No 497
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=52.01 E-value=14 Score=34.58 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=22.6
Q ss_pred EEEEccCCCChhHHhHHHHHHHHHhhhhccCCCCCceEEEEe
Q 011908 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (475)
Q Consensus 139 ~li~~~tGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~lil~ 180 (475)
.+..+..|.|||.++...+..... .|.+++++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~---------~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAE---------KGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHH---------SSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHH---------CCCeEEEEe
Confidence 577899999999887554444332 266677766
No 498
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=51.66 E-value=5.7 Score=41.77 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=0.0
Q ss_pred cEEEEccCCCChhHHh
Q 011908 138 DMIGRARTGTGKTLAF 153 (475)
Q Consensus 138 ~~li~~~tGsGKT~~~ 153 (475)
++++.||+|+|||.++
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
No 499
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=51.59 E-value=9.8 Score=35.22 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=12.9
Q ss_pred EEEEccCCCChhHHh
Q 011908 139 MIGRARTGTGKTLAF 153 (475)
Q Consensus 139 ~li~~~tGsGKT~~~ 153 (475)
+-+.|++|||||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999754
No 500
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=51.47 E-value=5.3 Score=35.35 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=14.4
Q ss_pred cCCcEEEEccCCCChhH
Q 011908 135 QGRDMIGRARTGTGKTL 151 (475)
Q Consensus 135 ~~~~~li~~~tGsGKT~ 151 (475)
.|.-+.+.||.|||||.
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45568899999999996
Done!