BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011909
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D952|EVPL_MOUSE Envoplakin OS=Mus musculus GN=Evpl PE=2 SV=3
Length = 2035
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 49/255 (19%)
Query: 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQ 148
I+EE VK ++K+ LE + + L+ E D K +V L Q LQ Q DL +Q
Sbjct: 1462 IMEEVVK---------LEKDPDLERSTEALRRELDQEKNRVTELHRECQGLQVQVDL-LQ 1511
Query: 149 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW--LQKEAALEQKISQLRDES 206
K + E+TI + + ++++ LE A + W L +E A + R+E
Sbjct: 1512 KTKSQEKTI----YKEVIRVEKDPVLEGERARV------WEILNRERAARKG----REED 1557
Query: 207 AALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL 266
SL+ER+ EA + SW++ E+ + S D +L+ Q+ ELE+ +
Sbjct: 1558 VR------SLQERIDRAEALRRSWSREEAELQRARDQASQDCGRLQRQLRELEQQKQ--- 1608
Query: 267 QENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEK- 325
Q+ RQL+E L + S+ K Q + + TQ+EAA ++ E ++ EK
Sbjct: 1609 QKARQLQEEGRLLSQKTESERQKAAQRSQA-----VTQLEAA------ILQEKDKIYEKE 1657
Query: 326 --VNDLSVKLDRQSV 338
+ DL K+ R+ +
Sbjct: 1658 RTLRDLHTKVSREEL 1672
>sp|Q09778|TSC1_SCHPO Tuberous sclerosis 1 protein homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tsc1 PE=1 SV=1
Length = 899
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 34/234 (14%)
Query: 47 ASEPADI---QNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILE--ETVKHLRNER 101
ASEP I QN + H + + A L+ E + + E ++ ++ ER
Sbjct: 469 ASEPFSISWPQNPSISGSVHSATTFDKAQLSNTEDSYDNISHGTSYSEGVSSIHMVKGER 528
Query: 102 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR 161
S N +L E +++ +TI++LQR + L +Q E E+ ++Q
Sbjct: 529 GS----------------NNLELTSESLSSTNDTIRRLQR-DLLFLQNELRFEKFVRQQH 571
Query: 162 NQNDLHIQREGGLEMNIAN-----LQSEKEFWLQKEAALEQKISQLRDES-AALNMKRAS 215
QN + RE L+M + + L + K + Q E L +I + R ES AALN +R
Sbjct: 572 LQNIGKLHREHILDMAVESERQKLLLTNKRYKAQIEL-LNSEIDKHRSESQAALN-RRVK 629
Query: 216 LEE----RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNL 265
E ++K L +K +W ES K +I L + +R +++ S+N L
Sbjct: 630 WENDFNNKIKALREEKKAWKSEESELKSSIESLISQLESIRNSQIDIAFSKNQL 683
>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium falciparum (isolate
3D7) GN=PFB0145c PE=2 SV=1
Length = 1979
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 18/200 (9%)
Query: 237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD---ESKKLQH 293
S+ + L +I L +V+EL +N L++EN +L V + +L D + K+++
Sbjct: 1143 SRSNLFQLKNEICSLTTEVMELNNKKNELIEENNKLNL-VDQGKKKLKKDVEKQKKEIEK 1201
Query: 294 ATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTA 353
+ + QI+ ++KL ENIEL+ NDL+ K D + + D +
Sbjct: 1202 LNKQLTKCNKQIDELNEEVEKLNNENIELITYSNDLNNKFDMKENNLMMKLDENEDNIKK 1261
Query: 354 LTSDTEPM--------SESSDNMSSLNNRLETQGVVAVKEDRNGINGVHAD----PPPLV 401
+ S + M E N++ +NN + + +K N +N + D +
Sbjct: 1262 MKSKIDDMEKEIKYREDEKKRNLNEINNLKKKNEDMCIK--YNEMNIKYGDICVKYEEMS 1319
Query: 402 LSSSEAEYSGEIVQIPLDDK 421
L+ E E +++ D+K
Sbjct: 1320 LTYKETSLKYEQIKVKYDEK 1339
>sp|P51834|SMC_BACSU Chromosome partition protein Smc OS=Bacillus subtilis (strain 168)
GN=smc PE=1 SV=3
Length = 1186
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 127 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR-NQNDLHIQREGGLEMNIA--NLQS 183
EK A LE+ ++ L+ +K A L ET + LR Q D+ Q E+ +A N+ +
Sbjct: 691 EKTALLEQEVKTLKHSIQDMEKKLADLRETGEGLRLKQQDVKGQL---YELQVAEKNINT 747
Query: 184 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG 243
E + Q+++AL + + + L + +++ E++K LE D D T+ + T
Sbjct: 748 HLELYDQEKSALSESDEERKVRKRKLEEELSAVSEKMKQLEEDIDRLTKQKQTQSSTKES 807
Query: 244 LSVDITQLRMQVVELEES----RNNLLQENRQL----------KENVSSLRSQLSSDES- 288
LS ++T+L++ + E++ +NL + ++L KE++S L S++SS S
Sbjct: 808 LSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSEMSSSTSG 867
Query: 289 -KKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333
+KL+ A A L DK T+ IEL+ D +KL
Sbjct: 868 EEKLEEA------------AKHKLNDK--TKTIELIALRRDQRIKL 899
>sp|O00291|HIP1_HUMAN Huntingtin-interacting protein 1 OS=Homo sapiens GN=HIP1 PE=1 SV=5
Length = 1037
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 15/199 (7%)
Query: 43 VRSQASEPADIQNVQVDADRHQSNGAESA--NLAEAERQHLLQREAMAILEETVKHLRNE 100
+R QA++ + ++D R Q E A +L+E ER+ + + L+E L
Sbjct: 422 LRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSELVQN 481
Query: 101 RESHIQKEATLEGTVQQL-QNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ 159
++K A + V Q + DL +EK LE++++++ Q + Q++ + E++KQ
Sbjct: 482 HADLLRKNAEVTKQVSMARQAQVDLEREK-KELEDSLERISDQGQRKTQEQLEVLESLKQ 540
Query: 160 --LRNQNDLHI---------QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 208
+Q +L + Q E A L+ E++ + A E+++S LR E
Sbjct: 541 ELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVSGAAHREEELSALRKELQD 600
Query: 209 LNMKRASLEERLKLLEADK 227
+K AS EE + L D+
Sbjct: 601 TQLKLASTEESMCQLAKDQ 619
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.123 0.314
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,603,480
Number of Sequences: 539616
Number of extensions: 6176737
Number of successful extensions: 38555
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 2620
Number of HSP's that attempted gapping in prelim test: 29222
Number of HSP's gapped (non-prelim): 7410
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 63 (28.9 bits)