Query 011909
Match_columns 475
No_of_seqs 94 out of 103
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0964 Structural maintenance 99.8 3.4E-16 7.4E-21 173.6 28.8 318 111-446 263-603 (1200)
2 TIGR02169 SMC_prok_A chromosom 98.9 7.3E-06 1.6E-10 93.8 35.7 12 410-421 572-583 (1164)
3 TIGR02168 SMC_prok_B chromosom 98.8 1.2E-05 2.7E-10 91.5 33.6 13 410-422 570-582 (1179)
4 TIGR02169 SMC_prok_A chromosom 98.8 1.5E-05 3.3E-10 91.2 33.5 47 153-199 306-352 (1164)
5 TIGR02168 SMC_prok_B chromosom 98.8 2.6E-05 5.6E-10 88.9 34.8 44 173-216 320-363 (1179)
6 PF07888 CALCOCO1: Calcium bin 98.7 0.00022 4.8E-09 77.9 38.6 37 301-337 422-458 (546)
7 COG1196 Smc Chromosome segrega 98.7 6.9E-05 1.5E-09 88.2 36.2 228 109-337 691-925 (1163)
8 COG1196 Smc Chromosome segrega 98.7 1.2E-05 2.7E-10 94.3 29.3 189 149-338 296-495 (1163)
9 PF00038 Filament: Intermediat 98.4 0.0012 2.6E-08 66.2 32.1 218 108-329 49-288 (312)
10 PF15070 GOLGA2L5: Putative go 98.4 0.00028 6E-09 78.4 29.8 170 90-270 2-184 (617)
11 PF07888 CALCOCO1: Calcium bin 98.4 0.00081 1.7E-08 73.6 31.5 66 99-164 150-215 (546)
12 PF00261 Tropomyosin: Tropomyo 98.3 0.0005 1.1E-08 67.5 25.6 221 95-324 4-225 (237)
13 PRK02224 chromosome segregatio 98.3 0.0019 4E-08 73.5 33.6 84 174-258 312-396 (880)
14 TIGR00606 rad50 rad50. This fa 98.3 0.00087 1.9E-08 80.0 30.6 161 111-276 749-925 (1311)
15 KOG0161 Myosin class II heavy 98.3 0.0024 5.2E-08 78.4 34.4 98 90-187 906-1003(1930)
16 KOG0977 Nuclear envelope prote 98.2 0.00088 1.9E-08 73.4 27.0 82 70-153 33-132 (546)
17 PRK02224 chromosome segregatio 98.2 0.0015 3.2E-08 74.4 30.0 44 236-279 596-639 (880)
18 KOG0161 Myosin class II heavy 98.2 0.0038 8.2E-08 76.7 34.8 81 112-192 949-1029(1930)
19 PHA02562 46 endonuclease subun 98.2 0.0013 2.8E-08 70.7 27.2 168 156-331 214-393 (562)
20 PF00038 Filament: Intermediat 98.2 0.0067 1.5E-07 60.9 30.0 97 86-185 48-151 (312)
21 TIGR00606 rad50 rad50. This fa 98.1 0.0033 7.1E-08 75.2 32.0 38 297-334 1055-1092(1311)
22 KOG0971 Microtubule-associated 98.1 0.0037 8.1E-08 71.3 29.2 116 111-226 229-354 (1243)
23 PHA02562 46 endonuclease subun 98.1 0.0027 5.8E-08 68.3 27.2 8 441-448 499-506 (562)
24 PF09726 Macoilin: Transmembra 98.0 0.0064 1.4E-07 68.7 30.2 100 81-180 414-513 (697)
25 PF10174 Cast: RIM-binding pro 98.0 0.0051 1.1E-07 70.2 29.0 194 87-280 109-335 (775)
26 PF15070 GOLGA2L5: Putative go 98.0 0.013 2.9E-07 65.4 31.6 197 77-279 23-235 (617)
27 KOG0250 DNA repair protein RAD 98.0 0.0049 1.1E-07 71.6 28.6 102 175-277 280-382 (1074)
28 KOG0612 Rho-associated, coiled 98.0 0.0064 1.4E-07 71.3 29.1 197 86-284 459-660 (1317)
29 KOG0977 Nuclear envelope prote 98.0 0.0019 4.2E-08 70.7 23.9 241 93-333 43-333 (546)
30 PRK11637 AmiB activator; Provi 98.0 0.0072 1.6E-07 64.0 27.4 55 111-165 45-99 (428)
31 KOG0250 DNA repair protein RAD 98.0 0.0061 1.3E-07 70.8 28.3 11 444-454 627-637 (1074)
32 KOG0933 Structural maintenance 97.9 0.029 6.3E-07 65.0 32.8 226 110-339 705-942 (1174)
33 PRK11637 AmiB activator; Provi 97.9 0.019 4.1E-07 60.8 29.6 84 116-199 43-126 (428)
34 PF00261 Tropomyosin: Tropomyo 97.9 0.032 6.9E-07 54.9 28.3 80 113-192 1-80 (237)
35 KOG4674 Uncharacterized conser 97.9 0.037 8E-07 67.8 33.7 196 89-285 56-256 (1822)
36 PRK03918 chromosome segregatio 97.9 0.051 1.1E-06 61.8 33.6 14 440-453 814-827 (880)
37 PRK03918 chromosome segregatio 97.8 0.1 2.2E-06 59.4 35.2 36 301-336 396-431 (880)
38 KOG4643 Uncharacterized coiled 97.8 0.046 1E-06 63.4 31.5 122 85-211 177-336 (1195)
39 PF12128 DUF3584: Protein of u 97.8 0.045 9.7E-07 65.3 32.1 201 90-290 605-825 (1201)
40 KOG0976 Rho/Rac1-interacting s 97.8 0.052 1.1E-06 61.9 30.4 156 65-223 246-405 (1265)
41 PF14915 CCDC144C: CCDC144C pr 97.8 0.069 1.5E-06 54.9 30.5 172 107-285 50-246 (305)
42 KOG4674 Uncharacterized conser 97.7 0.056 1.2E-06 66.2 31.7 245 86-335 547-837 (1822)
43 PF10174 Cast: RIM-binding pro 97.7 0.048 1E-06 62.5 29.2 101 177-278 323-424 (775)
44 PF14662 CCDC155: Coiled-coil 97.6 0.021 4.6E-07 55.3 22.3 35 153-187 65-99 (193)
45 KOG0976 Rho/Rac1-interacting s 97.6 0.17 3.7E-06 57.9 31.9 173 88-260 58-256 (1265)
46 KOG0978 E3 ubiquitin ligase in 97.6 0.14 3.1E-06 57.9 31.2 122 219-341 497-625 (698)
47 KOG0946 ER-Golgi vesicle-tethe 97.6 0.017 3.7E-07 65.7 23.6 97 100-199 654-760 (970)
48 PF14915 CCDC144C: CCDC144C pr 97.6 0.12 2.7E-06 53.1 27.4 116 222-337 120-248 (305)
49 PRK04863 mukB cell division pr 97.5 0.22 4.8E-06 60.9 33.4 140 154-294 354-497 (1486)
50 COG1579 Zn-ribbon protein, pos 97.5 0.021 4.6E-07 57.0 20.8 52 114-165 11-62 (239)
51 KOG0612 Rho-associated, coiled 97.5 0.072 1.6E-06 63.0 27.5 174 87-261 467-652 (1317)
52 PF12128 DUF3584: Protein of u 97.5 0.16 3.5E-06 60.7 31.2 162 120-291 621-795 (1201)
53 KOG0933 Structural maintenance 97.4 0.42 9.1E-06 56.0 32.3 183 87-273 693-891 (1174)
54 PF09730 BicD: Microtubule-ass 97.4 0.21 4.6E-06 56.9 29.8 40 246-285 265-304 (717)
55 PRK09039 hypothetical protein; 97.4 0.014 3E-07 60.8 19.1 121 157-285 62-183 (343)
56 PF08317 Spc7: Spc7 kinetochor 97.4 0.099 2.2E-06 53.8 25.1 150 134-287 114-264 (325)
57 KOG4643 Uncharacterized coiled 97.4 0.079 1.7E-06 61.6 26.1 42 297-338 409-450 (1195)
58 PF09726 Macoilin: Transmembra 97.4 0.085 1.8E-06 59.9 26.2 40 236-275 542-581 (697)
59 PF05667 DUF812: Protein of un 97.4 0.079 1.7E-06 59.2 25.5 93 112-204 327-422 (594)
60 PF14662 CCDC155: Coiled-coil 97.4 0.16 3.5E-06 49.3 25.5 48 114-161 9-56 (193)
61 PRK01156 chromosome segregatio 97.3 0.49 1.1E-05 54.5 34.3 110 75-188 148-268 (895)
62 COG4372 Uncharacterized protei 97.3 0.26 5.7E-06 52.5 27.4 199 117-316 78-279 (499)
63 PRK01156 chromosome segregatio 97.3 0.55 1.2E-05 54.1 33.6 12 447-458 801-812 (895)
64 KOG0996 Structural maintenance 97.3 0.29 6.3E-06 57.9 29.5 41 91-131 305-345 (1293)
65 KOG4673 Transcription factor T 97.3 0.51 1.1E-05 53.5 30.3 169 114-282 475-677 (961)
66 PRK04863 mukB cell division pr 97.3 0.76 1.7E-05 56.4 34.0 128 140-267 347-477 (1486)
67 KOG4673 Transcription factor T 97.3 0.51 1.1E-05 53.5 29.5 240 76-318 364-659 (961)
68 COG1579 Zn-ribbon protein, pos 97.2 0.07 1.5E-06 53.4 21.0 38 183-220 45-82 (239)
69 PF08317 Spc7: Spc7 kinetochor 97.2 0.024 5.1E-07 58.4 18.3 56 110-165 146-201 (325)
70 PF15066 CAGE1: Cancer-associa 97.2 0.14 3E-06 55.5 24.2 162 77-261 304-475 (527)
71 KOG1029 Endocytic adaptor prot 97.2 0.12 2.6E-06 58.9 23.7 128 155-282 437-578 (1118)
72 KOG0996 Structural maintenance 97.1 0.96 2.1E-05 53.8 33.2 24 410-433 666-689 (1293)
73 KOG0995 Centromere-associated 97.1 0.24 5.1E-06 54.9 25.4 65 142-206 260-324 (581)
74 PF05483 SCP-1: Synaptonemal c 97.1 0.72 1.6E-05 52.2 33.1 169 109-277 446-625 (786)
75 COG1340 Uncharacterized archae 97.1 0.41 8.8E-06 49.4 29.5 70 93-162 14-83 (294)
76 COG1340 Uncharacterized archae 97.1 0.45 9.7E-06 49.1 26.8 103 114-223 14-119 (294)
77 PF12718 Tropomyosin_1: Tropom 97.1 0.061 1.3E-06 49.6 17.3 123 97-230 5-127 (143)
78 COG5185 HEC1 Protein involved 97.0 0.53 1.1E-05 51.4 26.4 247 93-339 272-573 (622)
79 PRK04778 septation ring format 97.0 0.8 1.7E-05 50.7 31.8 157 174-333 254-427 (569)
80 KOG0971 Microtubule-associated 97.0 1.1 2.3E-05 52.4 29.5 120 115-234 306-447 (1243)
81 PF13851 GAS: Growth-arrest sp 97.0 0.24 5.1E-06 48.1 21.6 61 92-152 27-87 (201)
82 PF01576 Myosin_tail_1: Myosin 97.0 0.00017 3.7E-09 82.8 0.0 182 103-285 114-310 (859)
83 PF05701 WEMBL: Weak chloropla 97.0 0.81 1.7E-05 50.3 33.2 117 64-180 43-183 (522)
84 PRK11281 hypothetical protein; 97.0 0.093 2E-06 62.4 22.2 37 295-331 284-320 (1113)
85 PF13851 GAS: Growth-arrest sp 97.0 0.2 4.3E-06 48.7 20.9 136 113-266 27-163 (201)
86 KOG0963 Transcription factor/C 97.0 0.57 1.2E-05 52.4 26.5 187 102-290 134-353 (629)
87 COG4942 Membrane-bound metallo 96.9 0.63 1.4E-05 50.1 25.5 174 112-291 58-241 (420)
88 PF10473 CENP-F_leu_zip: Leuci 96.9 0.076 1.7E-06 49.2 16.3 86 233-322 52-138 (140)
89 PF01576 Myosin_tail_1: Myosin 96.9 0.00026 5.7E-09 81.2 0.0 191 148-338 264-482 (859)
90 KOG0999 Microtubule-associated 96.9 1.1 2.4E-05 49.8 27.1 40 297-337 202-246 (772)
91 KOG0980 Actin-binding protein 96.8 0.62 1.3E-05 53.9 26.0 142 137-278 389-533 (980)
92 PRK10929 putative mechanosensi 96.8 0.68 1.5E-05 55.3 27.3 37 295-331 264-300 (1109)
93 COG4942 Membrane-bound metallo 96.8 1 2.2E-05 48.6 26.0 31 300-330 214-244 (420)
94 PRK09039 hypothetical protein; 96.8 0.3 6.5E-06 51.0 21.8 123 89-225 43-165 (343)
95 PF05701 WEMBL: Weak chloropla 96.8 1.2 2.5E-05 49.0 33.0 144 140-287 210-357 (522)
96 KOG0946 ER-Golgi vesicle-tethe 96.8 0.9 2E-05 52.3 26.6 72 108-179 645-716 (970)
97 PF05557 MAD: Mitotic checkpoi 96.7 0.0016 3.5E-08 73.3 5.0 141 89-229 261-417 (722)
98 PF05483 SCP-1: Synaptonemal c 96.7 1.6 3.4E-05 49.7 28.3 187 92-282 450-651 (786)
99 PRK04778 septation ring format 96.7 0.75 1.6E-05 50.9 25.1 42 236-277 459-500 (569)
100 TIGR03185 DNA_S_dndD DNA sulfu 96.6 1.8 3.8E-05 48.6 29.4 77 114-193 210-286 (650)
101 PF05622 HOOK: HOOK protein; 96.6 0.00058 1.3E-08 76.7 0.0 30 130-159 328-357 (713)
102 PF05667 DUF812: Protein of un 96.5 2.1 4.5E-05 48.2 30.4 125 154-279 393-531 (594)
103 PF09789 DUF2353: Uncharacteri 96.5 0.51 1.1E-05 49.2 20.7 140 130-279 75-222 (319)
104 KOG0963 Transcription factor/C 96.5 2.1 4.6E-05 48.1 31.7 229 107-336 60-343 (629)
105 KOG0964 Structural maintenance 96.4 0.67 1.4E-05 54.3 23.0 50 236-285 443-492 (1200)
106 PRK10929 putative mechanosensi 96.4 0.89 1.9E-05 54.4 24.5 104 222-333 177-281 (1109)
107 KOG1029 Endocytic adaptor prot 96.4 1.8 3.9E-05 49.9 25.4 23 93-115 373-395 (1118)
108 KOG1899 LAR transmembrane tyro 96.4 0.77 1.7E-05 51.6 22.3 41 297-337 268-308 (861)
109 PF15619 Lebercilin: Ciliary p 96.3 1.1 2.5E-05 43.4 22.2 68 262-333 120-187 (194)
110 PF04849 HAP1_N: HAP1 N-termin 96.3 0.54 1.2E-05 48.7 19.7 40 116-155 93-135 (306)
111 smart00787 Spc7 Spc7 kinetocho 96.3 0.33 7.2E-06 50.3 18.3 56 110-165 141-196 (312)
112 PF12718 Tropomyosin_1: Tropom 96.3 0.78 1.7E-05 42.4 18.9 43 237-279 99-141 (143)
113 TIGR03007 pepcterm_ChnLen poly 96.3 1.6 3.4E-05 46.9 24.1 177 135-317 162-376 (498)
114 KOG0980 Actin-binding protein 96.2 3.5 7.6E-05 48.1 27.6 162 112-285 357-519 (980)
115 PF08614 ATG16: Autophagy prot 96.2 0.038 8.3E-07 52.8 10.0 52 178-229 125-176 (194)
116 PF10473 CENP-F_leu_zip: Leuci 96.1 0.9 1.9E-05 42.2 18.4 66 196-262 51-117 (140)
117 PF10168 Nup88: Nuclear pore c 96.1 1.3 2.8E-05 50.7 23.5 174 127-333 536-715 (717)
118 PF09789 DUF2353: Uncharacteri 96.1 2.3 5E-05 44.5 23.6 105 172-277 68-178 (319)
119 PF07111 HCR: Alpha helical co 96.1 3.7 8.1E-05 46.8 29.6 192 87-285 333-553 (739)
120 KOG0018 Structural maintenance 96.0 2.9 6.3E-05 49.6 25.6 111 112-222 226-349 (1141)
121 TIGR01005 eps_transp_fam exopo 96.0 2 4.3E-05 48.8 24.0 37 130-166 190-226 (754)
122 KOG0995 Centromere-associated 95.9 3.7 8.1E-05 45.8 29.6 214 102-315 255-504 (581)
123 TIGR01843 type_I_hlyD type I s 95.9 2.4 5.3E-05 43.6 23.5 31 317-347 253-283 (423)
124 KOG1853 LIS1-interacting prote 95.9 1.8 3.9E-05 44.1 20.6 148 159-335 35-182 (333)
125 PF09730 BicD: Microtubule-ass 95.9 1.5 3.2E-05 50.3 22.3 83 107-210 28-110 (717)
126 PF10168 Nup88: Nuclear pore c 95.9 1 2.3E-05 51.5 21.1 58 83-140 534-592 (717)
127 PF05622 HOOK: HOOK protein; 95.9 0.0022 4.7E-08 72.2 0.0 15 82-96 142-156 (713)
128 COG4372 Uncharacterized protei 95.9 3.3 7.1E-05 44.5 26.4 56 236-291 214-269 (499)
129 KOG0994 Extracellular matrix g 95.8 6.2 0.00013 47.5 27.1 114 113-226 1511-1634(1758)
130 smart00787 Spc7 Spc7 kinetocho 95.8 2.8 6.1E-05 43.5 24.7 111 174-288 149-260 (312)
131 KOG0018 Structural maintenance 95.8 5.9 0.00013 47.2 27.3 241 73-322 649-896 (1141)
132 COG3883 Uncharacterized protei 95.8 2.6 5.7E-05 43.0 22.0 69 136-204 33-101 (265)
133 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 1.4 3.1E-05 39.8 17.9 28 250-277 102-129 (132)
134 PF04849 HAP1_N: HAP1 N-termin 95.8 1.1 2.4E-05 46.5 18.9 33 110-142 164-196 (306)
135 PF09728 Taxilin: Myosin-like 95.8 3 6.4E-05 43.2 30.2 44 89-132 54-97 (309)
136 PRK11281 hypothetical protein; 95.7 2.6 5.7E-05 50.6 24.3 49 84-133 59-107 (1113)
137 PF00769 ERM: Ezrin/radixin/mo 95.7 1.3 2.9E-05 44.2 18.9 106 115-220 21-126 (246)
138 PF10481 CENP-F_N: Cenp-F N-te 95.7 2.1 4.5E-05 44.0 20.2 167 145-333 15-192 (307)
139 PF05911 DUF869: Plant protein 95.7 3.6 7.7E-05 47.7 24.3 96 181-277 83-179 (769)
140 PF04111 APG6: Autophagy prote 95.6 0.17 3.7E-06 52.2 12.7 93 174-280 41-133 (314)
141 PF08614 ATG16: Autophagy prot 95.5 0.11 2.3E-06 49.8 9.8 47 231-277 135-182 (194)
142 PF09728 Taxilin: Myosin-like 95.4 3.9 8.4E-05 42.4 30.8 122 102-223 25-147 (309)
143 PF05557 MAD: Mitotic checkpoi 95.4 0.044 9.5E-07 62.0 8.1 84 245-329 502-585 (722)
144 PF10481 CENP-F_N: Cenp-F N-te 95.4 3.1 6.7E-05 42.8 20.0 26 311-336 279-304 (307)
145 TIGR01843 type_I_hlyD type I s 95.3 3.9 8.5E-05 42.1 21.5 8 410-417 346-353 (423)
146 PF05010 TACC: Transforming ac 95.3 3.3 7.1E-05 40.9 26.3 40 240-279 162-201 (207)
147 TIGR01000 bacteriocin_acc bact 95.3 3.6 7.8E-05 44.1 21.7 38 310-347 291-328 (457)
148 PF04012 PspA_IM30: PspA/IM30 95.3 3 6.4E-05 40.3 22.2 118 108-234 25-142 (221)
149 PF05010 TACC: Transforming ac 95.1 3.7 8E-05 40.5 26.5 92 113-207 9-100 (207)
150 TIGR03185 DNA_S_dndD DNA sulfu 95.1 7.4 0.00016 43.8 32.8 32 110-141 213-244 (650)
151 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.0 2.7 5.8E-05 38.0 17.7 27 115-141 5-31 (132)
152 KOG4360 Uncharacterized coiled 95.0 1.2 2.5E-05 49.2 16.7 138 79-223 153-301 (596)
153 KOG0978 E3 ubiquitin ligase in 94.9 9.1 0.0002 43.9 29.3 93 189-282 502-595 (698)
154 PLN02939 transferase, transfer 94.7 13 0.00027 44.4 30.0 78 265-342 322-401 (977)
155 PF15294 Leu_zip: Leucine zipp 94.6 1.4 3E-05 45.3 15.4 60 97-165 118-177 (278)
156 KOG1850 Myosin-like coiled-coi 94.6 7.1 0.00015 41.1 30.9 38 296-333 292-329 (391)
157 KOG0999 Microtubule-associated 94.6 9.9 0.00021 42.7 28.7 117 103-226 41-157 (772)
158 PF04111 APG6: Autophagy prote 94.6 0.67 1.4E-05 47.9 13.4 55 109-163 39-93 (314)
159 KOG0994 Extracellular matrix g 94.6 13 0.00029 44.9 24.6 72 116-187 1566-1637(1758)
160 PF15619 Lebercilin: Ciliary p 94.5 5.1 0.00011 39.0 23.2 16 116-131 15-30 (194)
161 TIGR03007 pepcterm_ChnLen poly 94.5 7.5 0.00016 41.8 21.5 90 174-263 252-348 (498)
162 KOG0979 Structural maintenance 94.3 15 0.00032 43.7 25.8 82 77-160 616-704 (1072)
163 PF06160 EzrA: Septation ring 94.3 11 0.00023 42.1 24.8 27 304-330 307-333 (560)
164 COG1842 PspA Phage shock prote 94.3 4.1 8.9E-05 40.5 17.5 115 109-225 27-141 (225)
165 TIGR02977 phageshock_pspA phag 94.0 6.5 0.00014 38.4 22.7 115 107-230 25-139 (219)
166 PF05911 DUF869: Plant protein 94.0 11 0.00024 43.9 22.5 200 128-339 510-716 (769)
167 PF12795 MscS_porin: Mechanose 94.0 6.8 0.00015 38.6 18.8 15 84-98 17-31 (240)
168 PF15397 DUF4618: Domain of un 93.9 8.3 0.00018 39.3 26.7 145 176-331 63-221 (258)
169 PF04156 IncA: IncA protein; 93.9 2.4 5.3E-05 39.8 14.6 45 178-222 90-134 (191)
170 KOG4302 Microtubule-associated 93.8 9.8 0.00021 43.4 21.3 217 90-333 23-256 (660)
171 KOG4593 Mitotic checkpoint pro 93.7 16 0.00036 41.8 29.7 51 225-275 178-229 (716)
172 KOG1103 Predicted coiled-coil 93.6 5.8 0.00013 42.3 17.9 65 224-288 230-294 (561)
173 TIGR02680 conserved hypothetic 93.5 25 0.00054 43.3 27.7 26 263-288 924-949 (1353)
174 KOG0979 Structural maintenance 93.5 21 0.00046 42.5 27.6 39 247-285 319-357 (1072)
175 PF09304 Cortex-I_coil: Cortex 93.4 4.5 9.7E-05 36.2 14.3 69 119-187 8-76 (107)
176 PF09738 DUF2051: Double stran 93.4 4.8 0.0001 41.8 16.8 150 117-284 81-250 (302)
177 PF13870 DUF4201: Domain of un 93.3 7.3 0.00016 36.6 20.0 114 110-223 17-131 (177)
178 KOG0804 Cytoplasmic Zn-finger 93.2 2.8 6E-05 45.7 15.1 30 250-279 418-447 (493)
179 KOG1003 Actin filament-coating 93.2 9.4 0.0002 37.6 23.2 50 236-285 113-162 (205)
180 PF10146 zf-C4H2: Zinc finger- 93.2 2.6 5.7E-05 42.0 14.1 68 214-282 35-103 (230)
181 COG0419 SbcC ATPase involved i 93.2 22 0.00047 41.7 32.6 44 242-285 399-442 (908)
182 TIGR01005 eps_transp_fam exopo 93.1 8.8 0.00019 43.6 20.0 15 455-469 645-659 (754)
183 PF06005 DUF904: Protein of un 93.1 0.83 1.8E-05 37.9 8.7 53 178-230 6-58 (72)
184 PF11559 ADIP: Afadin- and alp 92.9 4.9 0.00011 36.7 14.4 57 167-223 50-106 (151)
185 PF09787 Golgin_A5: Golgin sub 92.8 18 0.00039 39.8 22.6 12 451-462 483-494 (511)
186 PLN03188 kinesin-12 family pro 92.7 29 0.00063 42.4 23.6 144 138-285 1048-1198(1320)
187 PF15066 CAGE1: Cancer-associa 92.6 19 0.00042 39.6 20.6 103 236-338 387-506 (527)
188 PF06005 DUF904: Protein of un 92.5 2 4.4E-05 35.7 10.3 65 136-200 6-70 (72)
189 PF06160 EzrA: Septation ring 92.4 21 0.00046 39.7 27.3 128 208-337 223-364 (560)
190 PF06785 UPF0242: Uncharacteri 92.3 17 0.00038 38.5 19.9 123 132-264 97-219 (401)
191 KOG0249 LAR-interacting protei 92.3 8.5 0.00019 44.3 17.8 42 239-280 216-257 (916)
192 KOG0804 Cytoplasmic Zn-finger 92.2 5.6 0.00012 43.4 15.8 71 136-206 327-398 (493)
193 PRK15422 septal ring assembly 92.1 1.2 2.6E-05 37.8 8.6 50 236-285 22-71 (79)
194 COG5185 HEC1 Protein involved 92.1 23 0.00049 39.3 21.1 105 174-279 314-422 (622)
195 PF09304 Cortex-I_coil: Cortex 91.9 4.6 0.0001 36.1 12.4 92 136-229 4-95 (107)
196 KOG0288 WD40 repeat protein Ti 91.9 8 0.00017 41.9 16.4 101 172-279 9-109 (459)
197 PF09755 DUF2046: Uncharacteri 91.9 18 0.00039 37.9 31.6 35 89-123 31-65 (310)
198 KOG4360 Uncharacterized coiled 91.8 11 0.00024 41.9 17.5 139 124-282 163-304 (596)
199 PF07111 HCR: Alpha helical co 91.8 29 0.00064 40.0 31.5 114 110-223 152-275 (739)
200 TIGR01000 bacteriocin_acc bact 91.7 21 0.00047 38.3 23.2 11 409-419 392-402 (457)
201 KOG1003 Actin filament-coating 91.6 15 0.00032 36.3 25.0 99 187-285 85-183 (205)
202 TIGR03017 EpsF chain length de 91.5 21 0.00045 37.7 25.3 37 130-166 167-203 (444)
203 KOG0249 LAR-interacting protei 91.5 14 0.0003 42.6 18.4 39 177-216 113-151 (916)
204 PF09755 DUF2046: Uncharacteri 91.2 21 0.00046 37.3 25.5 89 215-324 110-199 (310)
205 PF12329 TMF_DNA_bd: TATA elem 91.2 2.2 4.8E-05 35.4 9.2 68 146-213 3-70 (74)
206 PF11932 DUF3450: Protein of u 91.1 15 0.00032 36.5 16.6 94 178-279 23-117 (251)
207 PF09744 Jnk-SapK_ap_N: JNK_SA 91.0 9 0.0002 36.3 14.2 93 121-216 44-136 (158)
208 PF06818 Fez1: Fez1; InterPro 90.8 18 0.00039 35.7 20.8 52 115-166 12-63 (202)
209 KOG1899 LAR transmembrane tyro 90.6 22 0.00047 40.7 18.5 77 89-165 108-198 (861)
210 PF12325 TMF_TATA_bd: TATA ele 90.4 12 0.00027 33.9 13.9 36 181-216 21-56 (120)
211 PF00769 ERM: Ezrin/radixin/mo 90.2 21 0.00046 35.8 16.8 52 112-163 11-62 (246)
212 PF14197 Cep57_CLD_2: Centroso 89.9 3.5 7.6E-05 33.9 9.2 60 111-170 3-62 (69)
213 PF10186 Atg14: UV radiation r 89.8 21 0.00045 35.2 16.4 8 322-329 149-156 (302)
214 PRK10884 SH3 domain-containing 89.8 4 8.7E-05 40.1 11.2 78 236-324 90-167 (206)
215 PF03148 Tektin: Tektin family 89.6 25 0.00054 37.4 17.7 78 89-166 205-290 (384)
216 PF12329 TMF_DNA_bd: TATA elem 89.6 3.7 8E-05 34.1 9.2 68 209-276 3-70 (74)
217 PF08581 Tup_N: Tup N-terminal 89.5 7.8 0.00017 32.8 11.2 74 111-187 2-75 (79)
218 KOG2991 Splicing regulator [RN 89.5 28 0.0006 35.9 24.3 214 51-285 46-282 (330)
219 KOG4593 Mitotic checkpoint pro 89.4 47 0.001 38.3 34.4 163 111-273 106-271 (716)
220 COG3883 Uncharacterized protei 89.0 30 0.00064 35.6 23.5 56 110-165 49-104 (265)
221 KOG3091 Nuclear pore complex, 89.0 16 0.00034 40.5 15.8 148 157-317 336-487 (508)
222 KOG0962 DNA repair protein RAD 88.9 67 0.0015 39.6 30.6 26 247-272 1009-1034(1294)
223 PRK10361 DNA recombination pro 88.9 42 0.00091 37.1 24.0 63 261-334 134-196 (475)
224 PF15450 DUF4631: Domain of un 88.8 44 0.00096 37.3 30.5 139 193-334 340-491 (531)
225 PF10186 Atg14: UV radiation r 88.6 26 0.00057 34.5 17.1 9 261-269 145-153 (302)
226 KOG4807 F-actin binding protei 88.4 42 0.00091 36.6 23.7 105 124-230 360-468 (593)
227 COG3074 Uncharacterized protei 88.3 4.3 9.4E-05 34.0 8.6 46 240-285 26-71 (79)
228 PF15254 CCDC14: Coiled-coil d 88.3 39 0.00084 39.5 18.8 19 304-322 537-555 (861)
229 TIGR02680 conserved hypothetic 88.3 75 0.0016 39.3 32.7 33 89-121 746-778 (1353)
230 PRK10698 phage shock protein P 88.2 28 0.00061 34.4 22.5 53 108-160 26-78 (222)
231 KOG4302 Microtubule-associated 88.1 34 0.00074 39.3 18.3 132 197-332 54-189 (660)
232 PF14197 Cep57_CLD_2: Centroso 87.9 5.2 0.00011 32.9 8.9 42 174-215 24-65 (69)
233 PF10146 zf-C4H2: Zinc finger- 87.9 11 0.00023 37.8 12.8 71 219-289 33-103 (230)
234 PRK15422 septal ring assembly 87.9 5.1 0.00011 34.1 8.9 64 137-200 7-77 (79)
235 PRK10698 phage shock protein P 87.7 30 0.00066 34.2 20.0 171 90-276 36-217 (222)
236 COG5293 Predicted ATPase [Gene 87.7 50 0.0011 36.6 23.1 85 207-291 316-410 (591)
237 PF08647 BRE1: BRE1 E3 ubiquit 87.6 18 0.00038 31.3 12.8 88 190-277 3-90 (96)
238 KOG0962 DNA repair protein RAD 87.5 82 0.0018 38.9 27.0 194 141-334 850-1079(1294)
239 PF12325 TMF_TATA_bd: TATA ele 87.3 12 0.00026 34.0 11.7 42 237-278 21-62 (120)
240 KOG0288 WD40 repeat protein Ti 87.0 19 0.00041 39.2 14.6 72 149-220 7-78 (459)
241 TIGR03752 conj_TIGR03752 integ 86.7 4.9 0.00011 44.1 10.4 84 237-334 57-140 (472)
242 PF13870 DUF4201: Domain of un 86.5 29 0.00062 32.6 20.2 132 197-331 42-173 (177)
243 PRK10246 exonuclease subunit S 86.4 82 0.0018 37.8 32.0 38 195-232 722-759 (1047)
244 KOG1853 LIS1-interacting prote 86.1 45 0.00097 34.4 21.0 82 82-163 21-106 (333)
245 KOG2751 Beclin-like protein [S 85.7 36 0.00077 37.2 16.0 74 179-252 179-252 (447)
246 COG0419 SbcC ATPase involved i 85.7 81 0.0018 37.1 33.5 10 89-98 175-184 (908)
247 COG3074 Uncharacterized protei 85.4 13 0.00028 31.2 9.8 22 144-165 14-35 (79)
248 PF15450 DUF4631: Domain of un 85.3 69 0.0015 35.9 23.8 160 139-305 349-517 (531)
249 PF11932 DUF3450: Protein of u 85.2 42 0.0009 33.3 17.7 6 442-447 239-244 (251)
250 PF09787 Golgin_A5: Golgin sub 85.1 66 0.0014 35.5 24.3 43 238-280 336-382 (511)
251 COG2433 Uncharacterized conser 85.0 13 0.00028 42.1 12.7 46 184-229 416-461 (652)
252 PRK03947 prefoldin subunit alp 84.9 29 0.00063 31.3 13.9 38 113-150 6-43 (140)
253 PF07106 TBPIP: Tat binding pr 84.5 4.7 0.0001 37.6 8.0 24 193-216 75-98 (169)
254 KOG4677 Golgi integral membran 84.2 54 0.0012 36.2 16.5 159 118-312 307-468 (554)
255 COG2433 Uncharacterized conser 84.1 14 0.00031 41.8 12.5 89 178-272 417-507 (652)
256 PRK09841 cryptic autophosphory 84.0 66 0.0014 36.9 18.3 53 110-164 245-297 (726)
257 TIGR02449 conserved hypothetic 84.0 9.7 0.00021 31.3 8.5 48 241-288 16-63 (65)
258 KOG4809 Rab6 GTPase-interactin 83.8 83 0.0018 35.6 25.6 119 83-208 262-412 (654)
259 PRK03947 prefoldin subunit alp 83.6 33 0.00072 30.9 13.1 43 174-216 92-134 (140)
260 PF04582 Reo_sigmaC: Reovirus 83.6 1.8 3.8E-05 45.4 5.1 99 192-291 58-157 (326)
261 PF15254 CCDC14: Coiled-coil d 83.3 43 0.00094 39.1 16.0 37 187-223 491-527 (861)
262 PLN02939 transferase, transfer 83.1 1.2E+02 0.0025 36.7 20.2 196 101-313 124-341 (977)
263 TIGR03017 EpsF chain length de 83.0 67 0.0015 33.9 21.9 43 178-220 256-298 (444)
264 PF08647 BRE1: BRE1 E3 ubiquit 82.6 31 0.00067 29.8 12.0 89 128-216 4-92 (96)
265 KOG4603 TBP-1 interacting prot 82.4 22 0.00047 34.7 11.5 85 231-315 84-171 (201)
266 KOG0239 Kinesin (KAR3 subfamil 82.3 1E+02 0.0022 35.6 19.8 107 181-291 225-331 (670)
267 PF05384 DegS: Sensor protein 82.3 47 0.001 31.6 19.1 100 182-281 26-126 (159)
268 PF13166 AAA_13: AAA domain 82.2 92 0.002 35.0 23.0 22 445-466 632-654 (712)
269 PF13514 AAA_27: AAA domain 82.2 1.2E+02 0.0027 36.4 32.3 16 411-426 1050-1065(1111)
270 PF08826 DMPK_coil: DMPK coile 81.9 8.2 0.00018 31.3 7.2 47 236-282 15-61 (61)
271 TIGR02338 gimC_beta prefoldin, 81.6 17 0.00036 31.9 9.8 42 244-285 65-106 (110)
272 PRK11519 tyrosine kinase; Prov 81.0 65 0.0014 36.9 16.8 39 127-165 260-298 (719)
273 PF10498 IFT57: Intra-flagella 80.5 85 0.0018 33.5 16.7 60 170-229 260-319 (359)
274 KOG0240 Kinesin (SMY1 subfamil 79.6 1.2E+02 0.0026 34.6 17.5 25 77-101 347-371 (607)
275 PF07989 Microtub_assoc: Micro 79.4 14 0.00031 30.8 8.1 68 194-261 4-72 (75)
276 PF04012 PspA_IM30: PspA/IM30 79.1 63 0.0014 31.1 22.9 110 174-283 28-142 (221)
277 KOG0239 Kinesin (KAR3 subfamil 79.0 1.3E+02 0.0028 34.7 18.3 96 194-294 224-321 (670)
278 PF06785 UPF0242: Uncharacteri 78.8 98 0.0021 33.2 19.4 103 82-195 65-167 (401)
279 KOG0993 Rab5 GTPase effector R 78.2 1.1E+02 0.0025 33.6 21.8 28 116-143 302-329 (542)
280 TIGR03752 conj_TIGR03752 integ 77.8 19 0.00041 39.7 10.6 47 175-221 58-104 (472)
281 PLN03229 acetyl-coenzyme A car 77.5 1.5E+02 0.0033 34.7 24.7 74 132-206 460-544 (762)
282 PF07106 TBPIP: Tat binding pr 77.3 18 0.0004 33.6 9.2 17 313-329 119-135 (169)
283 PRK04406 hypothetical protein; 76.8 18 0.00039 30.2 8.0 53 112-164 3-55 (75)
284 PF04912 Dynamitin: Dynamitin 76.6 1.1E+02 0.0023 32.5 16.9 137 145-285 206-361 (388)
285 PF02403 Seryl_tRNA_N: Seryl-t 76.3 18 0.00039 31.1 8.3 28 242-269 70-97 (108)
286 PF06705 SF-assemblin: SF-asse 75.4 89 0.0019 31.0 24.7 82 148-229 34-117 (247)
287 PF03962 Mnd1: Mnd1 family; I 75.2 63 0.0014 31.2 12.5 37 193-229 65-101 (188)
288 PF04582 Reo_sigmaC: Reovirus 74.1 7.4 0.00016 40.9 6.2 130 142-285 29-158 (326)
289 PF03962 Mnd1: Mnd1 family; I 73.5 67 0.0014 31.1 12.2 21 143-163 105-125 (188)
290 PF09744 Jnk-SapK_ap_N: JNK_SA 73.4 86 0.0019 29.8 14.6 114 93-220 37-154 (158)
291 PF12777 MT: Microtubule-bindi 73.2 1.2E+02 0.0027 31.6 20.0 105 233-345 214-319 (344)
292 TIGR02231 conserved hypothetic 73.0 44 0.00096 36.6 12.2 46 236-281 128-173 (525)
293 PF10211 Ax_dynein_light: Axon 72.9 58 0.0013 31.4 11.6 65 249-327 123-187 (189)
294 KOG1962 B-cell receptor-associ 72.8 57 0.0012 32.7 11.7 29 247-275 180-208 (216)
295 TIGR02231 conserved hypothetic 72.6 39 0.00085 37.0 11.6 42 188-229 129-170 (525)
296 PF15290 Syntaphilin: Golgi-lo 72.5 44 0.00096 34.8 11.1 26 260-285 117-142 (305)
297 PF10498 IFT57: Intra-flagella 72.4 1.3E+02 0.0029 32.0 15.1 79 115-193 247-325 (359)
298 PF02841 GBP_C: Guanylate-bind 71.8 1.2E+02 0.0026 30.9 15.3 128 79-224 169-297 (297)
299 PF10267 Tmemb_cc2: Predicted 71.5 1.1E+02 0.0023 33.3 14.3 66 222-287 252-318 (395)
300 PF15397 DUF4618: Domain of un 71.4 1.3E+02 0.0028 31.0 25.7 40 246-285 186-225 (258)
301 KOG0982 Centrosomal protein Nu 71.4 1.7E+02 0.0037 32.4 22.7 22 23-44 104-125 (502)
302 PF08826 DMPK_coil: DMPK coile 71.2 47 0.001 27.0 8.8 55 159-213 1-55 (61)
303 PF04871 Uso1_p115_C: Uso1 / p 71.2 86 0.0019 28.9 13.6 13 276-288 100-112 (136)
304 PF06705 SF-assemblin: SF-asse 70.8 1.1E+02 0.0025 30.2 27.7 178 87-282 7-190 (247)
305 PF12711 Kinesin-relat_1: Kine 70.7 23 0.0005 30.6 7.4 21 240-260 45-65 (86)
306 PF06008 Laminin_I: Laminin Do 70.6 1.2E+02 0.0026 30.3 25.4 69 129-197 47-115 (264)
307 TIGR00634 recN DNA repair prot 70.6 1.8E+02 0.0039 32.4 21.0 23 440-462 464-486 (563)
308 PF12761 End3: Actin cytoskele 70.4 42 0.0009 33.1 10.0 38 236-273 157-194 (195)
309 PRK09841 cryptic autophosphory 70.2 1.5E+02 0.0033 34.1 16.0 23 297-319 371-393 (726)
310 PF06156 DUF972: Protein of un 70.2 18 0.00039 32.2 6.9 46 236-281 12-57 (107)
311 TIGR01010 BexC_CtrB_KpsE polys 70.0 1.4E+02 0.0031 30.9 17.5 83 132-214 168-259 (362)
312 PRK00409 recombination and DNA 69.9 1.1E+02 0.0025 35.7 15.0 22 209-230 546-567 (782)
313 COG4026 Uncharacterized protei 69.6 1E+02 0.0022 31.4 12.6 46 236-281 160-205 (290)
314 KOG4460 Nuclear pore complex, 69.5 2.1E+02 0.0046 32.7 18.7 30 302-331 708-737 (741)
315 PRK10246 exonuclease subunit S 69.4 2.6E+02 0.0057 33.7 30.0 8 27-34 507-514 (1047)
316 KOG0992 Uncharacterized conser 69.3 2E+02 0.0044 32.4 24.2 25 315-339 394-418 (613)
317 PF12711 Kinesin-relat_1: Kine 69.2 18 0.0004 31.2 6.5 79 241-331 5-84 (86)
318 PF10267 Tmemb_cc2: Predicted 69.0 1.7E+02 0.0036 31.8 15.0 19 205-223 277-295 (395)
319 COG1842 PspA Phage shock prote 68.2 1.4E+02 0.0029 30.0 19.0 50 236-285 96-145 (225)
320 PF12777 MT: Microtubule-bindi 68.1 43 0.00092 34.9 10.3 45 118-162 233-277 (344)
321 KOG3990 Uncharacterized conser 68.0 54 0.0012 33.8 10.5 83 59-154 208-294 (305)
322 KOG4809 Rab6 GTPase-interactin 68.0 2.2E+02 0.0048 32.4 22.0 114 214-333 341-454 (654)
323 TIGR02894 DNA_bind_RsfA transc 67.8 66 0.0014 30.9 10.5 11 88-98 31-41 (161)
324 PF09738 DUF2051: Double stran 67.7 1.6E+02 0.0035 30.7 14.3 28 312-339 221-248 (302)
325 TIGR01069 mutS2 MutS2 family p 66.4 1.3E+02 0.0027 35.3 14.5 26 207-232 539-564 (771)
326 KOG2077 JNK/SAPK-associated pr 66.4 1.2E+02 0.0026 34.7 13.5 87 135-221 316-423 (832)
327 PF14992 TMCO5: TMCO5 family 66.1 1.7E+02 0.0037 30.4 14.8 33 186-218 105-137 (280)
328 KOG2196 Nuclear porin [Nuclear 66.1 1.6E+02 0.0035 30.1 15.9 86 177-269 72-157 (254)
329 PF05266 DUF724: Protein of un 65.9 1.4E+02 0.0029 29.2 14.4 7 92-98 57-63 (190)
330 PF02183 HALZ: Homeobox associ 65.8 21 0.00045 27.2 5.5 41 180-220 2-42 (45)
331 KOG4196 bZIP transcription fac 65.6 1E+02 0.0023 28.7 10.9 51 153-204 66-116 (135)
332 KOG0243 Kinesin-like protein [ 65.3 3.2E+02 0.007 33.3 26.7 38 91-128 410-463 (1041)
333 PF09731 Mitofilin: Mitochondr 64.1 2.4E+02 0.0051 31.3 23.8 29 107-135 245-273 (582)
334 PF14073 Cep57_CLD: Centrosome 63.6 1.5E+02 0.0033 28.9 17.9 157 85-241 4-177 (178)
335 PRK11519 tyrosine kinase; Prov 63.4 2E+02 0.0043 33.1 15.2 21 297-317 371-391 (719)
336 KOG0240 Kinesin (SMY1 subfamil 63.4 2.7E+02 0.0059 31.8 20.5 20 17-36 242-261 (607)
337 PF10211 Ax_dynein_light: Axon 63.2 1.5E+02 0.0032 28.7 14.0 8 77-84 81-88 (189)
338 PF10234 Cluap1: Clusterin-ass 63.1 1.9E+02 0.0041 29.9 14.2 67 157-223 171-237 (267)
339 PF10234 Cluap1: Clusterin-ass 63.1 1.9E+02 0.0041 29.9 17.0 118 81-221 139-256 (267)
340 PF01920 Prefoldin_2: Prefoldi 62.7 92 0.002 26.1 11.3 42 236-277 59-100 (106)
341 PF07798 DUF1640: Protein of u 62.5 1.4E+02 0.0031 28.2 17.1 35 177-211 59-94 (177)
342 PF04102 SlyX: SlyX; InterPro 62.4 51 0.0011 26.8 7.6 48 118-165 2-49 (69)
343 PRK06975 bifunctional uroporph 62.2 2.4E+02 0.0051 32.4 15.4 56 181-243 376-431 (656)
344 KOG2751 Beclin-like protein [S 62.2 1.2E+02 0.0027 33.2 12.4 83 176-258 183-265 (447)
345 PRK13169 DNA replication intia 62.1 28 0.00061 31.2 6.6 44 236-279 12-55 (110)
346 PF01486 K-box: K-box region; 61.6 64 0.0014 27.7 8.5 41 216-256 58-99 (100)
347 PF13514 AAA_27: AAA domain 61.6 3.6E+02 0.0079 32.6 32.7 39 250-288 893-931 (1111)
348 PF02403 Seryl_tRNA_N: Seryl-t 61.4 1E+02 0.0023 26.4 9.9 27 250-276 71-97 (108)
349 PRK09343 prefoldin subunit bet 61.1 1.3E+02 0.0027 27.1 12.9 6 272-277 97-102 (121)
350 PF07798 DUF1640: Protein of u 60.6 1.5E+02 0.0033 28.0 19.3 38 94-131 8-45 (177)
351 TIGR02338 gimC_beta prefoldin, 60.6 1.2E+02 0.0025 26.6 11.8 36 242-277 70-105 (110)
352 PF02090 SPAM: Salmonella surf 60.4 1.6E+02 0.0034 28.0 15.8 118 137-260 26-145 (147)
353 COG4026 Uncharacterized protei 59.9 1.4E+02 0.003 30.5 11.5 51 175-225 162-212 (290)
354 PRK00106 hypothetical protein; 59.6 3E+02 0.0066 31.1 19.5 15 452-466 430-444 (535)
355 PF02970 TBCA: Tubulin binding 58.6 91 0.002 26.7 8.9 34 197-230 7-41 (90)
356 PF04880 NUDE_C: NUDE protein, 58.4 12 0.00026 35.9 3.8 45 158-213 3-47 (166)
357 PF02994 Transposase_22: L1 tr 58.3 23 0.0005 37.6 6.3 46 176-221 144-189 (370)
358 PF08581 Tup_N: Tup N-terminal 57.7 1.2E+02 0.0026 25.8 10.4 74 90-166 2-75 (79)
359 PF07851 TMPIT: TMPIT-like pro 57.7 1.1E+02 0.0023 32.5 10.9 84 190-287 4-88 (330)
360 TIGR03319 YmdA_YtgF conserved 57.5 3.1E+02 0.0068 30.6 15.8 8 460-467 411-418 (514)
361 COG4477 EzrA Negative regulato 57.5 3.3E+02 0.0073 30.9 27.6 94 236-329 379-494 (570)
362 COG3206 GumC Uncharacterized p 56.9 2.8E+02 0.0061 29.8 23.2 27 297-323 374-400 (458)
363 cd00584 Prefoldin_alpha Prefol 56.8 83 0.0018 27.8 8.7 41 243-283 84-124 (129)
364 PF12252 SidE: Dot/Icm substra 56.8 4.7E+02 0.01 32.4 19.3 18 116-133 1066-1083(1439)
365 KOG4603 TBP-1 interacting prot 56.6 1E+02 0.0022 30.2 9.6 37 128-164 80-116 (201)
366 PF05529 Bap31: B-cell recepto 56.2 94 0.002 29.5 9.5 37 169-205 154-190 (192)
367 PF11180 DUF2968: Protein of u 56.2 2.1E+02 0.0046 28.2 12.4 38 191-228 99-136 (192)
368 PF10212 TTKRSYEDQ: Predicted 56.0 3.5E+02 0.0075 30.6 20.3 157 120-287 302-514 (518)
369 PF13863 DUF4200: Domain of un 55.9 1.4E+02 0.003 26.1 12.5 99 232-331 6-109 (126)
370 PF09486 HrpB7: Bacterial type 55.8 1.9E+02 0.0042 27.6 13.8 113 179-291 18-131 (158)
371 cd00632 Prefoldin_beta Prefold 55.2 1.4E+02 0.003 25.8 11.6 23 121-143 7-29 (105)
372 KOG2264 Exostosin EXT1L [Signa 54.7 56 0.0012 37.2 8.5 72 240-319 80-151 (907)
373 PF13094 CENP-Q: CENP-Q, a CEN 54.6 79 0.0017 29.2 8.5 33 197-229 20-52 (160)
374 PRK11546 zraP zinc resistance 54.1 45 0.00097 31.4 6.7 68 217-284 46-113 (143)
375 PF05529 Bap31: B-cell recepto 54.1 97 0.0021 29.4 9.2 9 268-276 176-184 (192)
376 PRK09343 prefoldin subunit bet 54.1 1.7E+02 0.0036 26.3 13.8 103 118-223 5-111 (121)
377 COG4477 EzrA Negative regulato 54.0 3.8E+02 0.0083 30.5 21.8 40 240-279 369-408 (570)
378 TIGR00414 serS seryl-tRNA synt 53.8 74 0.0016 34.3 9.3 75 209-288 35-111 (418)
379 PF13747 DUF4164: Domain of un 53.3 1.5E+02 0.0032 25.5 11.7 51 172-222 35-85 (89)
380 TIGR00293 prefoldin, archaeal 53.1 1.6E+02 0.0035 25.9 10.2 36 174-209 84-119 (126)
381 KOG0247 Kinesin-like protein [ 53.0 2.9E+02 0.0062 32.6 13.9 75 144-223 537-611 (809)
382 TIGR02449 conserved hypothetic 52.6 1.1E+02 0.0024 25.2 8.0 42 126-167 6-47 (65)
383 PF06156 DUF972: Protein of un 52.3 61 0.0013 28.9 7.0 46 240-285 9-54 (107)
384 PLN02678 seryl-tRNA synthetase 52.2 97 0.0021 34.0 9.9 44 248-291 73-116 (448)
385 PF13945 NST1: Salt tolerance 52.0 1E+02 0.0023 30.2 9.1 12 103-114 123-134 (190)
386 PF07889 DUF1664: Protein of u 51.2 1.7E+02 0.0036 27.0 9.8 72 194-266 51-123 (126)
387 PLN03229 acetyl-coenzyme A car 51.1 4.8E+02 0.01 30.8 22.5 36 273-309 648-686 (762)
388 TIGR02894 DNA_bind_RsfA transc 50.8 1.7E+02 0.0038 28.1 10.1 26 191-216 91-116 (161)
389 PF02050 FliJ: Flagellar FliJ 50.7 1.4E+02 0.0031 24.6 12.1 42 244-285 50-91 (123)
390 PF14282 FlxA: FlxA-like prote 50.6 61 0.0013 28.5 6.7 22 239-260 19-40 (106)
391 KOG1103 Predicted coiled-coil 50.3 3.7E+02 0.008 29.3 22.2 45 301-345 257-301 (561)
392 PF15035 Rootletin: Ciliary ro 50.2 2.5E+02 0.0054 27.2 12.4 134 182-328 1-134 (182)
393 KOG4005 Transcription factor X 49.7 55 0.0012 33.5 6.9 69 265-333 64-141 (292)
394 PF07989 Microtub_assoc: Micro 49.6 1.2E+02 0.0026 25.4 7.9 28 257-284 4-31 (75)
395 PF10205 KLRAQ: Predicted coil 49.0 2E+02 0.0043 25.8 11.1 71 195-279 3-73 (102)
396 PF10368 YkyA: Putative cell-w 49.0 2.7E+02 0.0058 27.3 18.5 157 102-279 21-190 (204)
397 PF06657 Cep57_MT_bd: Centroso 48.5 1.1E+02 0.0024 25.8 7.6 33 109-141 13-45 (79)
398 cd00890 Prefoldin Prefoldin is 48.4 1.7E+02 0.0037 25.3 9.2 101 186-286 2-127 (129)
399 PRK02119 hypothetical protein; 48.3 1.3E+02 0.0029 24.9 8.0 45 116-160 5-49 (73)
400 KOG3859 Septins (P-loop GTPase 48.0 2.7E+02 0.0059 29.7 11.7 49 106-154 352-404 (406)
401 PF04949 Transcrip_act: Transc 47.8 2.6E+02 0.0056 26.8 10.6 50 240-289 57-106 (159)
402 PRK02119 hypothetical protein; 47.8 90 0.002 25.9 6.9 41 153-193 7-47 (73)
403 KOG0982 Centrosomal protein Nu 47.6 4.4E+02 0.0095 29.3 26.3 32 260-291 410-441 (502)
404 PF14992 TMCO5: TMCO5 family 47.4 3.5E+02 0.0076 28.2 16.1 82 136-221 13-94 (280)
405 KOG4807 F-actin binding protei 47.3 4.3E+02 0.0094 29.2 23.8 86 109-204 294-392 (593)
406 PF09798 LCD1: DNA damage chec 47.2 1.6E+02 0.0034 34.1 10.9 28 304-331 34-61 (654)
407 PF06548 Kinesin-related: Kine 47.1 4.5E+02 0.0098 29.4 23.3 143 137-285 277-428 (488)
408 PF03915 AIP3: Actin interacti 46.9 4.3E+02 0.0093 29.0 17.1 89 111-201 174-271 (424)
409 PF10046 BLOC1_2: Biogenesis o 46.9 1.9E+02 0.0042 25.0 14.1 93 110-220 4-96 (99)
410 TIGR01010 BexC_CtrB_KpsE polys 46.8 3.5E+02 0.0076 28.0 15.8 19 80-100 71-89 (362)
411 PF10224 DUF2205: Predicted co 46.6 74 0.0016 27.1 6.3 49 260-316 16-64 (80)
412 PF06632 XRCC4: DNA double-str 46.5 3.8E+02 0.0083 28.5 12.9 39 116-154 140-178 (342)
413 PRK13169 DNA replication intia 46.5 1E+02 0.0022 27.7 7.5 47 176-222 8-54 (110)
414 KOG2991 Splicing regulator [RN 46.4 3.7E+02 0.008 28.1 17.9 43 301-343 269-311 (330)
415 PF12709 Kinetocho_Slk19: Cent 46.3 2E+02 0.0044 25.1 11.7 49 166-214 24-73 (87)
416 KOG0998 Synaptic vesicle prote 46.0 38 0.00083 39.9 6.0 21 190-210 505-525 (847)
417 PRK04325 hypothetical protein; 45.4 1.4E+02 0.0031 24.7 7.7 45 118-162 7-51 (74)
418 PF15372 DUF4600: Domain of un 45.3 1.7E+02 0.0037 27.2 8.9 73 260-339 15-87 (129)
419 PF09798 LCD1: DNA damage chec 44.9 72 0.0016 36.7 7.8 56 217-272 3-59 (654)
420 PRK02793 phi X174 lysis protei 44.9 1.4E+02 0.003 24.7 7.5 44 118-161 6-49 (72)
421 PF05615 THOC7: Tho complex su 44.8 2.4E+02 0.0051 25.5 11.9 37 137-173 42-78 (139)
422 PF02994 Transposase_22: L1 tr 44.6 60 0.0013 34.5 6.8 39 181-219 142-180 (370)
423 KOG4438 Centromere-associated 44.1 4.9E+02 0.011 28.9 25.2 34 113-146 173-206 (446)
424 PRK00295 hypothetical protein; 43.8 1.5E+02 0.0033 24.2 7.6 40 121-160 6-45 (68)
425 PF14931 IFT20: Intraflagellar 43.7 2.5E+02 0.0055 25.5 14.9 90 117-209 24-113 (120)
426 PF05700 BCAS2: Breast carcino 43.3 3.3E+02 0.0072 26.7 15.7 114 199-328 99-217 (221)
427 PRK10920 putative uroporphyrin 42.9 4.7E+02 0.01 28.4 15.3 33 203-235 105-138 (390)
428 PRK04406 hypothetical protein; 42.6 1.6E+02 0.0035 24.6 7.7 6 156-161 12-17 (75)
429 PF08172 CASP_C: CASP C termin 42.6 3.6E+02 0.0077 27.4 11.6 27 117-143 3-29 (248)
430 PRK05431 seryl-tRNA synthetase 42.5 1.4E+02 0.0031 32.3 9.3 41 250-290 70-110 (425)
431 cd00584 Prefoldin_alpha Prefol 42.4 2.4E+02 0.0052 24.9 11.9 27 119-145 5-31 (129)
432 PRK00736 hypothetical protein; 42.3 1.7E+02 0.0036 24.0 7.5 43 120-162 5-47 (68)
433 PF02183 HALZ: Homeobox associ 42.2 59 0.0013 24.7 4.6 36 299-334 8-43 (45)
434 cd00632 Prefoldin_beta Prefold 42.2 2.3E+02 0.0049 24.5 12.5 36 242-277 66-101 (105)
435 PF05278 PEARLI-4: Arabidopsis 42.1 4.2E+02 0.0091 27.5 15.0 44 238-288 199-242 (269)
436 TIGR00293 prefoldin, archaeal 41.9 2.4E+02 0.0052 24.7 10.0 38 181-218 84-121 (126)
437 PRK02793 phi X174 lysis protei 41.9 1.5E+02 0.0032 24.5 7.3 41 153-193 6-46 (72)
438 PF10805 DUF2730: Protein of u 41.7 2E+02 0.0042 25.3 8.5 70 188-258 26-98 (106)
439 PF02090 SPAM: Salmonella surf 41.5 3.2E+02 0.0069 26.0 13.9 81 202-282 35-116 (147)
440 PRK10803 tol-pal system protei 41.5 1.5E+02 0.0033 30.0 8.8 34 154-187 39-72 (263)
441 KOG3091 Nuclear pore complex, 41.3 5.7E+02 0.012 28.8 15.6 36 127-162 348-383 (508)
442 PF10226 DUF2216: Uncharacteri 41.2 3.7E+02 0.008 26.7 15.1 94 178-276 43-138 (195)
443 PF04102 SlyX: SlyX; InterPro 40.7 1.6E+02 0.0035 23.9 7.3 51 111-161 2-52 (69)
444 smart00340 HALZ homeobox assoc 40.4 52 0.0011 25.2 3.9 26 306-331 8-33 (44)
445 PF15294 Leu_zip: Leucine zipp 40.0 4.6E+02 0.0099 27.4 25.1 48 174-221 130-177 (278)
446 PF00170 bZIP_1: bZIP transcri 39.5 86 0.0019 24.7 5.4 30 248-277 28-57 (64)
447 PRK00846 hypothetical protein; 38.9 1.6E+02 0.0035 25.0 7.1 45 236-280 17-61 (77)
448 PF00170 bZIP_1: bZIP transcri 38.8 1.8E+02 0.0038 22.9 7.1 24 237-260 31-54 (64)
449 PRK00888 ftsB cell division pr 38.4 88 0.0019 27.6 5.8 42 111-153 32-73 (105)
450 PF06632 XRCC4: DNA double-str 38.2 5.2E+02 0.011 27.5 12.7 9 68-76 48-56 (342)
451 KOG0810 SNARE protein Syntaxin 38.2 4.9E+02 0.011 27.2 17.0 59 111-169 52-110 (297)
452 PRK14011 prefoldin subunit alp 38.0 3.4E+02 0.0075 25.4 10.6 44 242-285 84-127 (144)
453 PF14712 Snapin_Pallidin: Snap 37.9 2.4E+02 0.0051 23.5 11.1 31 111-141 12-42 (92)
454 PF05384 DegS: Sensor protein 37.9 3.7E+02 0.008 25.7 19.4 35 189-223 83-117 (159)
455 PHA03161 hypothetical protein; 37.7 3.6E+02 0.0077 25.8 9.9 44 236-279 58-101 (150)
456 PRK14011 prefoldin subunit alp 37.7 3.5E+02 0.0075 25.3 10.5 39 297-335 89-127 (144)
457 PRK00846 hypothetical protein; 37.6 2.2E+02 0.0049 24.1 7.8 45 118-162 11-55 (77)
458 KOG3990 Uncharacterized conser 37.6 1.4E+02 0.0031 30.8 7.8 28 169-196 267-294 (305)
459 TIGR00634 recN DNA repair prot 37.3 6.3E+02 0.014 28.2 23.6 10 458-467 539-548 (563)
460 PF12072 DUF3552: Domain of un 36.8 4E+02 0.0086 25.8 15.2 116 83-198 33-149 (201)
461 PF10779 XhlA: Haemolysin XhlA 36.7 1.9E+02 0.0041 23.5 7.1 20 121-140 7-26 (71)
462 PF01486 K-box: K-box region; 36.7 2.7E+02 0.0059 23.8 9.3 88 112-214 11-99 (100)
463 KOG0247 Kinesin-like protein [ 36.7 6.8E+02 0.015 29.7 13.6 93 107-204 521-613 (809)
464 PF11180 DUF2968: Protein of u 36.7 4.3E+02 0.0094 26.2 13.2 62 126-187 97-158 (192)
465 PF15188 CCDC-167: Coiled-coil 36.6 1.3E+02 0.0029 26.0 6.4 26 198-223 37-62 (85)
466 KOG0993 Rab5 GTPase effector R 36.6 6.4E+02 0.014 28.1 23.5 61 130-190 295-359 (542)
467 PRK10803 tol-pal system protei 36.5 3.3E+02 0.0071 27.5 10.3 29 301-336 73-101 (263)
468 PRK06800 fliH flagellar assemb 36.5 4.5E+02 0.0097 26.3 11.9 69 101-169 26-94 (228)
469 PF03915 AIP3: Actin interacti 36.4 6.2E+02 0.013 27.8 16.4 102 198-317 207-310 (424)
470 COG1382 GimC Prefoldin, chaper 36.3 3.4E+02 0.0075 24.9 12.7 37 248-284 72-108 (119)
471 PRK00736 hypothetical protein; 36.1 1.9E+02 0.0041 23.6 7.0 16 175-190 25-40 (68)
472 PLN02320 seryl-tRNA synthetase 36.0 1.8E+02 0.004 32.5 9.0 44 248-291 132-175 (502)
473 PF11802 CENP-K: Centromere-as 35.0 5.4E+02 0.012 26.7 12.5 89 111-199 94-184 (268)
474 PF13747 DUF4164: Domain of un 35.0 2.9E+02 0.0064 23.7 9.9 33 131-163 36-68 (89)
475 PF05546 She9_MDM33: She9 / Md 34.8 4.8E+02 0.01 26.1 12.9 76 87-167 11-86 (207)
476 PF03961 DUF342: Protein of un 34.7 1.9E+02 0.004 31.3 8.7 77 111-188 332-408 (451)
477 PF15188 CCDC-167: Coiled-coil 34.5 1.7E+02 0.0038 25.3 6.8 56 110-165 9-67 (85)
478 PRK13729 conjugal transfer pil 34.4 1.2E+02 0.0026 33.7 7.2 34 191-224 77-110 (475)
479 PF13874 Nup54: Nucleoporin co 34.2 2.8E+02 0.006 25.4 8.6 50 174-223 49-98 (141)
480 PF14931 IFT20: Intraflagellar 34.2 3.6E+02 0.0079 24.5 14.3 91 136-236 22-112 (120)
481 PRK12704 phosphodiesterase; Pr 34.2 7.1E+02 0.015 27.9 21.1 10 452-461 281-290 (520)
482 PRK15335 type III secretion sy 34.1 4E+02 0.0088 25.1 9.6 76 204-279 37-113 (147)
483 PF10224 DUF2205: Predicted co 34.1 2.4E+02 0.0052 24.1 7.5 47 170-216 17-63 (80)
484 PF05377 FlaC_arch: Flagella a 34.0 1.2E+02 0.0027 24.2 5.4 39 248-286 2-40 (55)
485 KOG4438 Centromere-associated 33.8 7E+02 0.015 27.7 24.0 68 248-317 264-334 (446)
486 PF12001 DUF3496: Domain of un 33.7 3.1E+02 0.0068 24.8 8.5 17 151-167 3-19 (111)
487 smart00338 BRLZ basic region l 33.6 1.5E+02 0.0033 23.3 6.0 39 238-276 25-63 (65)
488 PF05546 She9_MDM33: She9 / Md 33.6 5E+02 0.011 26.0 14.6 109 157-265 11-125 (207)
489 KOG1962 B-cell receptor-associ 33.4 5.2E+02 0.011 26.0 11.6 97 120-221 114-210 (216)
490 PRK10361 DNA recombination pro 33.3 7.3E+02 0.016 27.8 25.0 177 79-262 19-195 (475)
491 PF04912 Dynamitin: Dynamitin 33.2 6.1E+02 0.013 26.9 14.8 129 78-224 254-388 (388)
492 PF10205 KLRAQ: Predicted coil 33.1 3.6E+02 0.0078 24.2 10.0 76 116-191 1-76 (102)
493 COG2919 Septum formation initi 33.1 1.1E+02 0.0024 27.2 5.7 44 111-155 55-98 (117)
494 PF06810 Phage_GP20: Phage min 32.9 3.2E+02 0.007 25.7 8.9 76 179-254 2-84 (155)
495 KOG4001 Axonemal dynein light 32.5 3.1E+02 0.0067 27.7 9.0 70 187-256 182-252 (259)
496 KOG3850 Predicted membrane pro 32.3 6.4E+02 0.014 27.7 11.9 89 199-287 262-366 (455)
497 COG1730 GIM5 Predicted prefold 32.3 4.4E+02 0.0095 24.9 12.3 97 182-281 5-143 (145)
498 KOG0972 Huntingtin interacting 32.3 6.5E+02 0.014 26.9 16.4 164 139-333 193-358 (384)
499 PF06818 Fez1: Fez1; InterPro 32.1 5.2E+02 0.011 25.7 20.0 190 128-335 11-202 (202)
500 PF01920 Prefoldin_2: Prefoldi 32.0 3E+02 0.0065 22.9 12.0 82 124-205 2-98 (106)
No 1
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.4e-16 Score=173.65 Aligned_cols=318 Identities=19% Similarity=0.232 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 190 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~q 190 (475)
-+..+.++..++.+++.++..|..++.|++.+....+++++.+|++|++|++.+..+.|.+......+..|.+.|.....
T Consensus 263 ~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~ 342 (1200)
T KOG0964|consen 263 VEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKD 342 (1200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------HHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHH
Q 011909 191 KEAALEQKISQLRDESAALNMKRASLEERLKLL------------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVE 257 (475)
Q Consensus 191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~L------------kaERD~WLkkEI-sLke~ISsl~~EiksLqeEVke 257 (475)
+|+.|+|+|..|.+++..++.+++.++.+++.| +.|||.|++.|| .++.-|.........|++++..
T Consensus 343 EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~ 422 (1200)
T KOG0964|consen 343 ELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIED 422 (1200)
T ss_pred HHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999988 899999999999 9999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 258 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 337 (475)
Q Consensus 258 LEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~ 337 (475)
++.......++|..+-..+.+...++..+..+.+ +.++++...+++=..+--...+-..-+..-..+|...-+...
T Consensus 423 ~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~----~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~ 498 (1200)
T KOG0964|consen 423 LESELKEKLEEIKELESSINETKGRMEEFDAENT----ELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLR 498 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888766665 445555444443333222222222222222233333333344
Q ss_pred hhhcccccccccccccc------ccCCCCCCCCccccccccccccccccccccccCCCc---cCCCCCCCc-cccCCccc
Q 011909 338 VAAGLSSAIGSDAVTAL------TSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGI---NGVHADPPP-LVLSSSEA 407 (475)
Q Consensus 338 ~~~~~ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~ 407 (475)
++-+-+-++|-+.+..| .|+++|+.+-- .+.+.---..++ +-+|+- |--+++-+. ++.-|-.-
T Consensus 499 ~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~---~v~~~f~tavEv----taGNsLF~iVVdndevATkIl~~~n~m 571 (1200)
T KOG0964|consen 499 ATMNRSVANGIDSVRKIKEELKPNGVFGTVYELI---KVPNKFKTAVEV----TAGNSLFNIVVDNDEVATKILRKLNKM 571 (1200)
T ss_pred HhccchhhhhhHHHHHHHHHhcccccceehhhhh---cCCHHHHhHHhh----hcccceEEEEecccHHHHHHHHHHHhc
Confidence 44444444554443333 23344433211 111111111111 223332 111222111 12233333
Q ss_pred ccCCceeeccCCCccchhhhhhccccccccccCccCCCC
Q 011909 408 EYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDA 446 (475)
Q Consensus 408 ~~~~eiv~~~ld~~~~~~~~~q~~~~~~d~~~~vp~~da 446 (475)
. .|+|--+||+-.-.++.+ |.+.+++.|+++-
T Consensus 572 ~-~GrVTF~PLNrl~~r~v~------yp~~sdaiPli~k 603 (1200)
T KOG0964|consen 572 K-GGRVTFMPLNRLKARDVE------YPKDSDAIPLISK 603 (1200)
T ss_pred c-CCeeEEeecccCchhhcc------CCCCCCccchHHH
Confidence 3 489999999988776544 3456778888764
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.89 E-value=7.3e-06 Score=93.81 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.2
Q ss_pred CCceeeccCCCc
Q 011909 410 SGEIVQIPLDDK 421 (475)
Q Consensus 410 ~~eiv~~~ld~~ 421 (475)
.|.+--||||.+
T Consensus 572 ~gr~tflpl~~~ 583 (1164)
T TIGR02169 572 AGRATFLPLNKM 583 (1164)
T ss_pred CCCeeeccHhhc
Confidence 678888999744
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.80 E-value=1.2e-05 Score=91.50 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.1
Q ss_pred CCceeeccCCCcc
Q 011909 410 SGEIVQIPLDDKE 422 (475)
Q Consensus 410 ~~eiv~~~ld~~~ 422 (475)
.|-+.+||||...
T Consensus 570 ~g~~~~l~l~~i~ 582 (1179)
T TIGR02168 570 LGRVTFLPLDSIK 582 (1179)
T ss_pred CCcEEEeeccccc
Confidence 5667778887654
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.78 E-value=1.5e-05 Score=91.23 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKI 199 (475)
Q Consensus 153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~pei 199 (475)
++..+..++.......+....+..++..++.++.....++..+..++
T Consensus 306 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 352 (1164)
T TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.77 E-value=2.6e-05 Score=88.91 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=17.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 173 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 216 (475)
Q Consensus 173 ~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL 216 (475)
.+..++..++.++.....++..+.+++..+......+...+..+
T Consensus 320 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 363 (1179)
T TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444443433333
No 6
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.73 E-value=0.00022 Score=77.90 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=27.7
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 337 (475)
Q Consensus 301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~ 337 (475)
|.+.+..+...=++|+.++|.|.+.+..|..+|+.-.
T Consensus 422 lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 422 LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555667789999999999999998887653
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.70 E-value=6.9e-05 Score=88.19 Aligned_cols=228 Identities=21% Similarity=0.305 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909 109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 188 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~ 188 (475)
.-++..+..+...+..+......+...+..+..+...+......+..++..+.............+..++..++..+..+
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 770 (1163)
T COG1196 691 KSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444443333333333444444443333333333333333444444444444
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHH
Q 011909 189 LQKEAALEQKISQLR-------DESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES 261 (475)
Q Consensus 189 ~qEla~L~peiekL~-------~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEes 261 (475)
......+...+..+. .....+..++..+..++..|..++..|...-..+...|..+..++..+..++..+...
T Consensus 771 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~ 850 (1163)
T COG1196 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444333 4444444455555555555566666665555555556666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 262 RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 337 (475)
Q Consensus 262 r~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~ 337 (475)
...+...+..++.++..++..+..+.......+ .+-..|..++..+...+.++..+.+.+....+.|..++....
T Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 925 (1163)
T COG1196 851 LEELEKELEELKEELEELEAEKEELEDELKELE-EEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555555554443332 455677778888888888888888888887777766554444
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.68 E-value=1.2e-05 Score=94.33 Aligned_cols=189 Identities=19% Similarity=0.235 Sum_probs=78.1
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----
Q 011909 149 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----- 223 (475)
Q Consensus 149 kkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L----- 223 (475)
..+.++..|..++........+...+..++..++..+.....++......+..+......+......++..+..+
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~ 375 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344445555555555554444445555555555555555555555443334444444444444444444444412
Q ss_pred -----HHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 011909 224 -----EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSE 297 (475)
Q Consensus 224 -----kaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eE 297 (475)
..++..|+..++ .....+..++.++..+...+..+......+..++..+..++..++.++..+..++.-+ .+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 454 (1163)
T COG1196 376 ELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL-EEQ 454 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHH
Confidence 111222222222 2333333333333333333333333333333333333333333222222222222111 123
Q ss_pred hhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909 298 QKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSV 338 (475)
Q Consensus 298 n~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~ 338 (475)
.+.+...+..+...+..+....+.+..+++++...++-...
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 495 (1163)
T COG1196 455 LEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEA 495 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555666666666555544333
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.44 E-value=0.0012 Score=66.23 Aligned_cols=218 Identities=21% Similarity=0.297 Sum_probs=146.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh
Q 011909 108 EATLEGTVQQLQNECDLYKEK-------VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN 180 (475)
Q Consensus 108 e~~l~e~IkqLq~El~~lk~k-------l~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q 180 (475)
..+++..|.+|+..|+.+..+ +..+...+..++..+.........++..|..|+...+.....+..++.+|..
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~ 128 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQS 128 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence 556788888888887766544 4445555556666666678888899999999999999999999999999999
Q ss_pred HHHHHHHHH----HHHHHHHHHHH-HHHHH-----HHHHHHHHHhH----HHHHHHHHHhhhhhhhhhh-chHHHHhhhH
Q 011909 181 LQSEKEFWL----QKEAALEQKIS-QLRDE-----SAALNMKRASL----EERLKLLEADKDSWTQMES-VSKETIAGLS 245 (475)
Q Consensus 181 Lq~EI~~~~----qEla~L~peie-kL~~E-----e~~LkqkLasL----EeKl~~LkaERD~WLkkEI-sLke~ISsl~ 245 (475)
|+.+++... +++..|..++. ...-+ ...|...+..+ +......+.+=+.|.+..+ .+........
T Consensus 129 L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~ 208 (312)
T PF00038_consen 129 LKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSS 208 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccc
Confidence 999887643 35555555552 11111 12223333332 3333333777788888888 8888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHH
Q 011909 246 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEK 325 (475)
Q Consensus 246 ~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe 325 (475)
..+..++.++..+......+..++..|+.+...+..++..++.... .+.+.+...+..+-..+..+..+-++...+
T Consensus 209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~----~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD----EEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH----HHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888887777777777665554 344555555555555555555555554444
Q ss_pred HHHH
Q 011909 326 VNDL 329 (475)
Q Consensus 326 ~neL 329 (475)
.++|
T Consensus 285 y~~L 288 (312)
T PF00038_consen 285 YQEL 288 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 10
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.43 E-value=0.00028 Score=78.44 Aligned_cols=170 Identities=24% Similarity=0.316 Sum_probs=131.9
Q ss_pred HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH--
Q 011909 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH-- 167 (475)
Q Consensus 90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~-- 167 (475)
+-|+|++|+-|.|-. ..+|+.+...+.+++..+...+..|..+....+..+..+|-.|.+|+.....-
T Consensus 2 l~e~l~qlq~Erd~y----------a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~ 71 (617)
T PF15070_consen 2 LMESLKQLQAERDQY----------AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP 71 (617)
T ss_pred hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 458899999988753 34566666667777777777778888888888888888999999988765532
Q ss_pred -------HHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhhhhhhhhh-c
Q 011909 168 -------IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES-V 236 (475)
Q Consensus 168 -------~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L---kaERD~WLkkEI-s 236 (475)
.+.+..|.+++.+|+.+++.+..++.......+.|...+...+.+|..+|..++.+ ..++.. |...+ +
T Consensus 72 ~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~k-LLe~lqs 150 (617)
T PF15070_consen 72 PEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQK-LLEQLQS 150 (617)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcc
Confidence 23445678888899999999888887777777888777788888999999999888 456666 44567 7
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011909 237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENR 270 (475)
Q Consensus 237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIq 270 (475)
=+..|++--..+..|+.++.+|+...-.+..+..
T Consensus 151 dk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~ 184 (617)
T PF15070_consen 151 DKATASRALSQNRELKEQLAELQDAFVKLTNENM 184 (617)
T ss_pred cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7888899899999999999999886666665553
No 11
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.39 E-value=0.00081 Score=73.63 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=31.8
Q ss_pred cchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011909 99 NERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 164 (475)
Q Consensus 99 ~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~ 164 (475)
.|+.-..+.-..|++.+..|+.++..++..+.....+-.+|.............+......|....
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555555555555555555555555444444444444444444443333
No 12
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.32 E-value=0.0005 Score=67.52 Aligned_cols=221 Identities=14% Similarity=0.171 Sum_probs=114.2
Q ss_pred HhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhh
Q 011909 95 KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL 174 (475)
Q Consensus 95 ~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~L 174 (475)
..|+++.|--..+...++..++........+..++..|.-.+..|+.+++..-........++..++...+.+......+
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l 83 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555555555555555555444444555555544444444444334
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHH
Q 011909 175 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRM 253 (475)
Q Consensus 175 ee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqe 253 (475)
+.........++.....+...................++..++..+.... +|-.-+-..| .|...|......+.+|..
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aE-eR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAE-ERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 44434444444444444443433334444444444444444444443331 1222233455 666677777777777777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 011909 254 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVE 324 (475)
Q Consensus 254 EVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeE 324 (475)
...........+...|..|..+|..+..+....+..+. +|..+++.+...|.........+..
T Consensus 163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~--------~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVK--------KLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666777777777777777777666555444332 5555666666655555444444333
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=98.31 E-value=0.0019 Score=73.50 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=45.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLR 252 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLq 252 (475)
+......|...+......+..+..++..+......+...+..++..+..|+.+.+. +.+++ .+...+......+..+.
T Consensus 312 l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~-l~~~~~~~~~~l~~~~~~l~~l~ 390 (880)
T PRK02224 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAE-LESELEEAREAVEDRREEIEELE 390 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555566666666666666554443 44444 55555555555555555
Q ss_pred HHHHHh
Q 011909 253 MQVVEL 258 (475)
Q Consensus 253 eEVkeL 258 (475)
.++..+
T Consensus 391 ~el~el 396 (880)
T PRK02224 391 EEIEEL 396 (880)
T ss_pred HHHHHH
Confidence 544444
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.26 E-value=0.00087 Score=79.97 Aligned_cols=161 Identities=13% Similarity=0.117 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhHHHHHHHHHhhhhHHHHHhhhhHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR-------------MQKEATLEETIKQLRNQNDLHIQREGGLEMN 177 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~-------------LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~ 177 (475)
+++.+.++..++..++.++..+...+..+..+...+ .+....++-.|++|......... ..+
T Consensus 749 l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~-----~~s 823 (1311)
T TIGR00606 749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL-----DRT 823 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cCC
Confidence 455555666666655555666666666666666444 44445555555555544443322 235
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhh--hh-chHHHHhhhHHHHHHHHHH
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM--ES-VSKETIAGLSVDITQLRMQ 254 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkk--EI-sLke~ISsl~~EiksLqeE 254 (475)
+..|+.++.....++..+..++..+..+...+..++..|+.++..+...+...-.. .- .++..|..+..++..+...
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888877777777777777777777777776663333332110 11 4444444444444444444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 011909 255 VVELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 255 VkeLEesr~eL~kEIqqLReqL 276 (475)
+.+++.....+..++..+...+
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 904 IKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHhhhhhHHHHHHHHHH
Confidence 4444444444444444444433
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.26 E-value=0.0024 Score=78.35 Aligned_cols=98 Identities=30% Similarity=0.367 Sum_probs=40.6
Q ss_pred HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 169 (475)
Q Consensus 90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q 169 (475)
+|.-++.+..+.+-.=.+...++..-+.++.++..++..+.-++.++..++.+...+-.++-.+++.|..+++.++....
T Consensus 906 le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~k 985 (1930)
T KOG0161|consen 906 LEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSK 985 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333444444444444444444444444444444444444444444444444444444443333333
Q ss_pred HhhhhHHHHHhHHHHHHH
Q 011909 170 REGGLEMNIANLQSEKEF 187 (475)
Q Consensus 170 kea~Lee~I~qLq~EI~~ 187 (475)
....+++.+.+|.+.+..
T Consensus 986 ekk~lEe~~~~l~~~l~~ 1003 (1930)
T KOG0161|consen 986 EKKELEERIRELQDDLQA 1003 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 16
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.22 E-value=0.00088 Score=73.35 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHHH---HHHHHHHHHHHHHhhhcch-----hhhhHH----------HhhHHHHHHHHHHHHHHHHHHHHH
Q 011909 70 SANLAEAERQHLL---QREAMAILEETVKHLRNER-----ESHIQK----------EATLEGTVQQLQNECDLYKEKVAT 131 (475)
Q Consensus 70 ~~~~~~~~~~~~~---~~~~~~~~eeti~~l~~e~-----~~~~~~----------e~~l~e~IkqLq~El~~lk~kl~~ 131 (475)
.-.+.+.||+.+- -|=| -.=|.+|.|+.+| |+-+-+ -++++..|..+..-++....+.+.
T Consensus 33 ir~sR~rEK~El~~LNDRLA--~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~ 110 (546)
T KOG0977|consen 33 IRDSREREKKELQELNDRLA--VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAK 110 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3455666776543 3544 7778888888888 111111 244555555555556655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 011909 132 LEETIQQLQRQNDLRMQKEATL 153 (475)
Q Consensus 132 L~etikQLe~d~~~~LQkkA~l 153 (475)
++..+..|..+.+.+.++....
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 5556666655555555555555
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=98.21 E-value=0.0015 Score=74.35 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=24.2
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.+...|..+...+..|+..+..++..+..+..++..++.++..+
T Consensus 596 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 596 TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555544
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.21 E-value=0.0038 Score=76.66 Aligned_cols=81 Identities=23% Similarity=0.253 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHH
Q 011909 112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 191 (475)
Q Consensus 112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qE 191 (475)
+..+.+++.+.....+++..|..++..+++....+.+.+..+|..+++|.+.......+-..+.....+|...++.....
T Consensus 949 E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~ 1028 (1930)
T KOG0161|consen 949 ELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVT 1028 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444666666677788888888888888888888888888888888888888777777666666555555555554443
Q ss_pred H
Q 011909 192 E 192 (475)
Q Consensus 192 l 192 (475)
+
T Consensus 1029 l 1029 (1930)
T KOG0161|consen 1029 L 1029 (1930)
T ss_pred H
Confidence 3
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.18 E-value=0.0013 Score=70.70 Aligned_cols=168 Identities=12% Similarity=0.211 Sum_probs=73.6
Q ss_pred HHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhh----
Q 011909 156 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT---- 231 (475)
Q Consensus 156 kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WL---- 231 (475)
.+.+|+............++.++..|+.++.........+...+..+... +..++..+..++.+...|-
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~-------~~~~~~~l~~~~~~~~~~~~~~~ 286 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTA-------AAKIKSKIEQFQKVIKMYEKGGV 286 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555444444444445555555555544443333333333333333 3333333444444443331
Q ss_pred ----hhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchH
Q 011909 232 ----QMES-VSKETIAGLSVDITQLRMQVVELEESRN---NLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFST 303 (475)
Q Consensus 232 ----kkEI-sLke~ISsl~~EiksLqeEVkeLEesr~---eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~ 303 (475)
...+ ++...+..+...+..|+.++..++..+. ....+...+..++.+++..+..+...... ...+...|..
T Consensus 287 Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~-~~~~~~~l~~ 365 (562)
T PHA02562 287 CPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLIT-LVDKAKKVKA 365 (562)
T ss_pred CCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1222 2245555566666666666666666555 33333334444444444444443322211 1234445555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 304 QIEAAGALIDKLITENIELVEKVNDLSV 331 (475)
Q Consensus 304 E~E~l~s~vekL~~enq~LeEe~neL~~ 331 (475)
+++.|.+....+..+-++|.+++.++..
T Consensus 366 ei~~l~~~~~~~~~~l~~l~~~l~~~~~ 393 (562)
T PHA02562 366 AIEELQAEFVDNAEELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 5555544444444444444444444433
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.15 E-value=0.0067 Score=60.90 Aligned_cols=97 Identities=24% Similarity=0.357 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 86 AMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVA-------TLEETIQQLQRQNDLRMQKEATLEETIK 158 (475)
Q Consensus 86 ~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~-------~L~etikQLe~d~~~~LQkkA~lE~kIK 158 (475)
.|.+++.+|+.|+...|--...-+-++-.+..+..+++.++.+.. .+..++..|..+.+........++.+|.
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 377899999999999988877778888888888888877765554 5556666677788888888888888888
Q ss_pred HHHhhhhHHHHHhhhhHHHHHhHHHHH
Q 011909 159 QLRNQNDLHIQREGGLEMNIANLQSEK 185 (475)
Q Consensus 159 dLe~~~~s~~Qkea~Lee~I~qLq~EI 185 (475)
.|+......... ++++|..|+..+
T Consensus 128 ~L~eEl~fl~~~---heeEi~~L~~~~ 151 (312)
T PF00038_consen 128 SLKEELEFLKQN---HEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHH---HHHHHHTTSTT-
T ss_pred HHHHHHHHHHhh---hhhhhhhhhhcc
Confidence 888877654333 566677766665
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=0.0033 Score=75.17 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=24.4
Q ss_pred hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 297 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 334 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~ 334 (475)
|-.+|..+...+.+.-..+.-+.++|++.+..|..+|+
T Consensus 1055 e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606 1055 EHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55666666666666666666666666666666666663
No 22
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.10 E-value=0.0037 Score=71.34 Aligned_cols=116 Identities=20% Similarity=0.319 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh
Q 011909 111 LEGTVQQLQNECDLYK----------EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN 180 (475)
Q Consensus 111 l~e~IkqLq~El~~lk----------~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q 180 (475)
|+-.+++|.+++..+. .+++......+||+.=+...+++.|.++-.|.+-+.+-.........+...+.-
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555777777777554 344445555678888888888888888888887777666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909 181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 226 (475)
Q Consensus 181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE 226 (475)
...-|+...-...--+.+.+.|+.+...++.++++++-.+..|++|
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaE 354 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAE 354 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666667777888888888888888888888888554
No 23
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.08 E-value=0.0027 Score=68.32 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=3.2
Q ss_pred ccCCCCCc
Q 011909 441 VPLTDAPL 448 (475)
Q Consensus 441 vp~~dap~ 448 (475)
+.|.|-|.
T Consensus 499 ~lilDEp~ 506 (562)
T PHA02562 499 LLILDEVF 506 (562)
T ss_pred eEEEeccc
Confidence 33444443
No 24
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.04 E-value=0.0064 Score=68.73 Aligned_cols=100 Identities=24% Similarity=0.291 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 81 LLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL 160 (475)
Q Consensus 81 ~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL 160 (475)
.-..++..-||-.||+|+.|.-.-.|-|.=|.-.|..|...-..++.++..|..+-++|+..+..+.+.+-.--..|..|
T Consensus 414 ~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L 493 (697)
T PF09726_consen 414 NSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL 493 (697)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555677788888888777777776666665554443333333333333333333333333333333333333333
Q ss_pred HhhhhHHHHHhhhhHHHHHh
Q 011909 161 RNQNDLHIQREGGLEMNIAN 180 (475)
Q Consensus 161 e~~~~s~~Qkea~Lee~I~q 180 (475)
+........+++.+|.+|..
T Consensus 494 EkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 494 EKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444433
No 25
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.02 E-value=0.0051 Score=70.15 Aligned_cols=194 Identities=20% Similarity=0.186 Sum_probs=115.6
Q ss_pred HHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhH
Q 011909 87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQN-------------DLRMQKEATL 153 (475)
Q Consensus 87 ~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~-------------~~~LQkkA~l 153 (475)
++..++-+.+|+.|+|..+-.=..|.+++..++..+..+++.+.....+++.|.... .......+..
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~ 188 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREA 188 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHH
Confidence 344555666666666665555566777777777777777777777777777776643 2344556666
Q ss_pred HHHHHHHHhhhhHHHHHhhhh----H---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 154 EETIKQLRNQNDLHIQREGGL----E---------MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 154 E~kIKdLe~~~~s~~Qkea~L----e---------e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
+..+-.|+....-....-..+ + ..-..|++.|+.+..+.+.++.-+..|.++...|...+...++.+
T Consensus 189 e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r 268 (775)
T PF10174_consen 189 EARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR 268 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 666666665544333332111 1 112247788888888888888888888888777777666444433
Q ss_pred HHH------HHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 221 KLL------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 221 ~~L------kaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
..+ ..-.-.+++.-+ -++-.|+....++..++..+..+.+.-......|.-|++.|....
T Consensus 269 ~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke 335 (775)
T PF10174_consen 269 DRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKE 335 (775)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333 111112233334 555566666666666666666666666666666666665555443
No 26
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.01 E-value=0.013 Score=65.39 Aligned_cols=197 Identities=21% Similarity=0.238 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 011909 77 ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK---------EKVATLEETIQQLQRQNDLRM 147 (475)
Q Consensus 77 ~~~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk---------~kl~~L~etikQLe~d~~~~L 147 (475)
|+..|=||-+ -+-+.+..|++|++-.+..=--|+..|..|+.++..-. .....|+..+++|..++..+.
T Consensus 23 e~a~~qqr~~--qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~ 100 (617)
T PF15070_consen 23 ESAQWQQRMQ--QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLE 100 (617)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766 77788889999998888877778888888777666221 222345555555555554444
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAAL---EQKISQLRDESAALNMKRASLEERLKLLE 224 (475)
Q Consensus 148 QkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L---~peiekL~~Ee~~LkqkLasLEeKl~~Lk 224 (475)
.+....-..-..|..-+....++-..++.++..++....+..+-++.| +.-+......|..|+++|.+++.....|-
T Consensus 101 ~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 101 EQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 332221111222222222333334445555555555544433333322 34567778888999999999999888886
Q ss_pred Hhhhh---hhhhhhchHHHHh-hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 225 ADKDS---WTQMESVSKETIA-GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 225 aERD~---WLkkEIsLke~IS-sl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
+++-. -|+.|- .+. .+...+..|+.++..+.+.......+...|..+-+.+
T Consensus 181 ne~~elt~~lq~Eq----~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 181 NENMELTSALQSEQ----HVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQY 235 (617)
T ss_pred HhhhHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 66532 233332 221 2333334444444444444444444555554444433
No 27
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.00 E-value=0.0049 Score=71.62 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=57.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHH
Q 011909 175 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRM 253 (475)
Q Consensus 175 ee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqe 253 (475)
..+++.+..+|.....+.+++..+++........+.+++.+.++++..+..+=+. ...|| .+...+....-+...++.
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~-~d~Ei~~~r~~~~~~~re~~~~~~ 358 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDA-QDEEIEEARKDLDDLRREVNDLKE 358 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777777777777777777777777777777554444 33444 444444444444444444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 254 QVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 254 EVkeLEesr~eL~kEIqqLReqLd 277 (475)
++.+.+.....+..++..++.+|.
T Consensus 359 ~~~~~~n~i~~~k~~~d~l~k~I~ 382 (1074)
T KOG0250|consen 359 EIREIENSIRKLKKEVDRLEKQIA 382 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333333333333333
No 28
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.99 E-value=0.0064 Score=71.30 Aligned_cols=197 Identities=21% Similarity=0.172 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhhcchhhhhHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011909 86 AMAILEETVKHLRNERESHIQKEATLE-GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 164 (475)
Q Consensus 86 ~~~~~eeti~~l~~e~~~~~~~e~~l~-e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~ 164 (475)
|.+-+++++|.|++...-..=.+..|+ +.+.-++.++.....++......++.|..+..+.-...-.++.+...+.+..
T Consensus 459 ~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~ 538 (1317)
T KOG0612|consen 459 AVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL 538 (1317)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555433322222222222 2333344444444444444444444444444333333333333333333333
Q ss_pred hHHHHHhhhhHHHHHhHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHH
Q 011909 165 DLHIQREGGLEMNIANLQSEKEF--WLQKE-AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKET 240 (475)
Q Consensus 165 ~s~~Qkea~Lee~I~qLq~EI~~--~~qEl-a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ 240 (475)
....+-+..+++...-+..+.+. +..+. ..+.-.+..+......+..++..++.-...|-.++-. ++.+. ...+.
T Consensus 539 ~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~-~~~~~e~~~~~ 617 (1317)
T KOG0612|consen 539 EKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKK-LRSELEKERRQ 617 (1317)
T ss_pred hhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33333333344333333333332 11111 2333334444444445555555555444444333333 33444 56666
Q ss_pred HhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 241 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 284 (475)
Q Consensus 241 ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiq 284 (475)
-..+...+..++.++..|++....+..+++.+++ +.....++.
T Consensus 618 ~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~ 660 (1317)
T KOG0612|consen 618 RTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERI 660 (1317)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHH
Confidence 6777777777888888888888888888877777 554444333
No 29
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.98 E-value=0.0019 Score=70.71 Aligned_cols=241 Identities=18% Similarity=0.254 Sum_probs=113.6
Q ss_pred HHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYK---------------EKVATLEETIQQLQRQNDLRMQKEATLEETI 157 (475)
Q Consensus 93 ti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk---------------~kl~~L~etikQLe~d~~~~LQkkA~lE~kI 157 (475)
.|..|..-.-.-|-|=-.|+..=+.|+..|+.+. .++..+--.+.....++..+-.....++..+
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~ 122 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREEL 122 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555556555555555555555555443 2333333333333334444444444444444
Q ss_pred HHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhch
Q 011909 158 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVS 237 (475)
Q Consensus 158 KdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsL 237 (475)
++|+.......+-.....+++..+..-+.....+.+.++..+..+.++..-|+.....+...|..++...|.=+.-=+.+
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~ 202 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDL 202 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555555555555555555566666666666666666666666666665555444422111233
Q ss_pred HHHHhhhHHHHHHHH----HHHHHh-------------HHHHHHHHHHHHHHHHHHHHH------------Hhhhhhhhh
Q 011909 238 KETIAGLSVDITQLR----MQVVEL-------------EESRNNLLQENRQLKENVSSL------------RSQLSSDES 288 (475)
Q Consensus 238 ke~ISsl~~EiksLq----eEVkeL-------------Eesr~eL~kEIqqLReqLdel------------qseiqsLE~ 288 (475)
...+..+..++.-+. .+|.++ +.....|...|+.+|.+.+.- +..++.+..
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~ 282 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRT 282 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 333333333333332 222221 224445555555555555421 111222211
Q ss_pred hh---hhhh---hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 289 KK---LQHA---TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 289 Ee---al~e---~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
.. .++. -||-++++..+.-|.+.|-.|...|..|+..+.+|..+|
T Consensus 283 ~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql 333 (546)
T KOG0977|consen 283 SAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQL 333 (546)
T ss_pred hhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhh
Confidence 00 0000 245555666666666655555556666666555555554
No 30
>PRK11637 AmiB activator; Provisional
Probab=97.97 E-value=0.0072 Score=63.97 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
+++.+++++.+|..+..++..+...+.+++.+...+-++...++..|..++..+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~ 99 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLN 99 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333333333333333333
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.96 E-value=0.0061 Score=70.83 Aligned_cols=11 Identities=27% Similarity=-0.151 Sum_probs=8.2
Q ss_pred CCCCcCCCchh
Q 011909 444 TDAPLIGAPFR 454 (475)
Q Consensus 444 ~dap~igapfr 454 (475)
.|.-.+||||+
T Consensus 627 ldg~~~~~~g~ 637 (1074)
T KOG0250|consen 627 LDGRQIFAGGP 637 (1074)
T ss_pred cCccccccCCC
Confidence 46677888887
No 32
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.029 Score=65.04 Aligned_cols=226 Identities=14% Similarity=0.175 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHH
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQ-----QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE 184 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etik-----QLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~E 184 (475)
.....+.+|+.+++...++++.+...+. ++.+++..+...+-..+..|++..........+-..++..++....
T Consensus 705 ~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~- 783 (1174)
T KOG0933|consen 705 AQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKA- 783 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-
Confidence 3455677777777777777777666553 3445555555555555555555555444444433222222222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHH
Q 011909 185 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRN 263 (475)
Q Consensus 185 I~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~ 263 (475)
....++..+..+|..+....++-...+...+-....|+.|-+. +.+|+ +.+..+..+...+..|..++-.|.-...
T Consensus 784 --~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~-l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 784 --NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEE-LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred --hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223344444555555554444444444444444455555554 45555 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhh----hhhh--hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 264 NLLQENRQLKENVSSLRSQLSSDESKK----LQHA--TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 337 (475)
Q Consensus 264 eL~kEIqqLReqLdelqseiqsLE~Ee----al~e--~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~ 337 (475)
........+...|.........+..+. ..++ ..++..+..++..+--.+.++..+.....-++..|..+.+-..
T Consensus 861 ~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 861 KVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred hHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 555555555555554433333333332 1111 3466666666666777777777777777777777777665554
Q ss_pred hh
Q 011909 338 VA 339 (475)
Q Consensus 338 ~~ 339 (475)
.+
T Consensus 941 ~e 942 (1174)
T KOG0933|consen 941 DE 942 (1174)
T ss_pred HH
Confidence 33
No 33
>PRK11637 AmiB activator; Provisional
Probab=97.92 E-value=0.019 Score=60.80 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAAL 195 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L 195 (475)
..++.+++.++++++.+...+.+++.+.....+.+..++..|..+...+....+.-..++.+|..++.+|.....++...
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666665555555555555555444444444444444444444444444333
Q ss_pred HHHH
Q 011909 196 EQKI 199 (475)
Q Consensus 196 ~pei 199 (475)
...+
T Consensus 123 ~~~l 126 (428)
T PRK11637 123 ERLL 126 (428)
T ss_pred HHHH
Confidence 3333
No 34
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.88 E-value=0.032 Score=54.93 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHH
Q 011909 113 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 192 (475)
Q Consensus 113 e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEl 192 (475)
+.|..|+.+++.+...+..+....+........+-...+.+.-+|..|+...+...++-.....+|..+...-+......
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888777777777777777777777777777777777777777766666655555555555444444433333
No 35
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.87 E-value=0.037 Score=67.76 Aligned_cols=196 Identities=21% Similarity=0.305 Sum_probs=97.0
Q ss_pred HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011909 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 168 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~ 168 (475)
-++-.|-+|++.-+..+..-..++..+-.|..++.....+...+..++.-+......+.+..+.+...-+.|.....-..
T Consensus 56 ~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~ 135 (1822)
T KOG4674|consen 56 ELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQK 135 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666677777777777777666555555555555555555555555555544444444433333
Q ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHH
Q 011909 169 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVD 247 (475)
Q Consensus 169 Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~E 247 (475)
..-..+...++.|...+.+.-+.+..+..+.......-..+.-++..++.+...|+. -..||..+. ...+.+..+..+
T Consensus 136 ~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s-~~~wL~~eL~~~~ekll~~~re 214 (1822)
T KOG4674|consen 136 AELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLES-ENKWLSRELSKVNEKLLSLRRE 214 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhh
Confidence 232333333444444444444444444444444444444444444444444443333 234555555 444444333333
Q ss_pred ----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 248 ----ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 248 ----iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
+..|+.++..+..+...+...+..|+.+...+...+..
T Consensus 215 ~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~ 256 (1822)
T KOG4674|consen 215 HSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIES 256 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444333
No 36
>PRK03918 chromosome segregation protein; Provisional
Probab=97.86 E-value=0.051 Score=61.76 Aligned_cols=14 Identities=14% Similarity=-0.028 Sum_probs=9.2
Q ss_pred CccCCCCCcCCCch
Q 011909 440 AVPLTDAPLIGAPF 453 (475)
Q Consensus 440 ~vp~~dap~igapf 453 (475)
.+.|.|.|..|-.+
T Consensus 814 ~~lilDEp~~~lD~ 827 (880)
T PRK03918 814 PLLILDEPTPFLDE 827 (880)
T ss_pred CeEEEeCCCcccCH
Confidence 44567777777644
No 37
>PRK03918 chromosome segregation protein; Provisional
Probab=97.83 E-value=0.1 Score=59.36 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=19.1
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ 336 (475)
Q Consensus 301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~ 336 (475)
+..+.+.+...+..+.....++...+++|...++..
T Consensus 396 l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L 431 (880)
T PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431 (880)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555666666665544433
No 38
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.81 E-value=0.046 Score=63.42 Aligned_cols=122 Identities=20% Similarity=0.350 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHH--------------------------------------
Q 011909 85 EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK-------------------------------------- 126 (475)
Q Consensus 85 ~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk-------------------------------------- 126 (475)
..+|.+++-||.|+-|.+--.-.=--++..|.+|+++|..+.
T Consensus 177 velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerl 256 (1195)
T KOG4643|consen 177 VELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERL 256 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhh
Confidence 346789999999987764433222223334444444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 127 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 206 (475)
Q Consensus 127 ~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee 206 (475)
............|+.|+.-++-.+.-++..|..|+...+. +.++.+|-+|+..++....+.....-++++|..++
T Consensus 257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-----~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn 331 (1195)
T KOG4643|consen 257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-----ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN 331 (1195)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1112234445666666666777777777777777665432 44555555555555555555555555666666666
Q ss_pred HHHHH
Q 011909 207 AALNM 211 (475)
Q Consensus 207 ~~Lkq 211 (475)
..|.-
T Consensus 332 stLq~ 336 (1195)
T KOG4643|consen 332 STLQV 336 (1195)
T ss_pred HHHHH
Confidence 55543
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.76 E-value=0.045 Score=65.30 Aligned_cols=201 Identities=18% Similarity=0.254 Sum_probs=116.8
Q ss_pred HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh-hHHH
Q 011909 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN-DLHI 168 (475)
Q Consensus 90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~-~s~~ 168 (475)
+++.+..+......+.-...-+++.++.....+..+..++..+....++.+.+...+......++.++......- ....
T Consensus 605 L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 684 (1201)
T PF12128_consen 605 LRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIE 684 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455777777777777777777777777777777777777777777777776655543 3333
Q ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHhHHHHHH-------HHHHhhhhhhhhhh-
Q 011909 169 QREGGLEMNIANLQSEKEFWLQKEAA-LEQKI----SQLRDESAALNMKRASLEERLK-------LLEADKDSWTQMES- 235 (475)
Q Consensus 169 Qkea~Lee~I~qLq~EI~~~~qEla~-L~pei----ekL~~Ee~~LkqkLasLEeKl~-------~LkaERD~WLkkEI- 235 (475)
.+-..++.++..++.++..|..++.. +.... ..+....+.+..++..+...+. .-+.+-+.|.+.|+
T Consensus 685 ~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~ 764 (1201)
T PF12128_consen 685 EQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELA 764 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666666776666666665421 11111 1122222333333333333332 22566677777776
Q ss_pred --ch-HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhhh
Q 011909 236 --VS-KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS---SLRSQLSSDESKK 290 (475)
Q Consensus 236 --sL-ke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd---elqseiqsLE~Ee 290 (475)
.. ...|..+...+..|.+++...+..+......-.-+++... .+..+.+.+..+.
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~ 825 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQL 825 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 22 3478888888888888888888877776666555555433 3444444444433
No 40
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.76 E-value=0.052 Score=61.86 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=100.4
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 011909 65 SNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL----EETIQQLQ 140 (475)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L----~etikQLe 140 (475)
|--+.|+.+. |.-+++|-.| ++++|+.+.|+--|...--.-.-.++.++.++.+++.+++...-. .+..+=|.
T Consensus 246 p~rk~~s~i~--E~d~~lq~sa-k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh 322 (1265)
T KOG0976|consen 246 PLRKTCSMIE--EQDMDLQASA-KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLH 322 (1265)
T ss_pred hHhhhhHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3345555553 6789999998 789999999998887766666666778888888888877665443 44455677
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 141 RQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 141 ~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
.++-.+...++.+.|.+++-+...+.--.+..+|+.+-.-+.....+..+++...+.++..|...-+.+.++++.+..++
T Consensus 323 ~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 323 LENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888888888877776665555555555544444444444444444444444445444444444444444444
Q ss_pred HHH
Q 011909 221 KLL 223 (475)
Q Consensus 221 ~~L 223 (475)
-.|
T Consensus 403 f~~ 405 (1265)
T KOG0976|consen 403 FRL 405 (1265)
T ss_pred hhh
Confidence 333
No 41
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.76 E-value=0.069 Score=54.91 Aligned_cols=172 Identities=17% Similarity=0.265 Sum_probs=97.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhh----hhHHHHHhHH
Q 011909 107 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG----GLEMNIANLQ 182 (475)
Q Consensus 107 ~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea----~Lee~I~qLq 182 (475)
+|.+|-++|-++.-++..++.+-..| ......--+.+..+|..|.-++....+..+.-. .--.-=-.++
T Consensus 50 neE~ltkTi~qy~~QLn~L~aENt~L-------~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafq 122 (305)
T PF14915_consen 50 NEETLTKTIFQYNGQLNVLKAENTML-------NSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQ 122 (305)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH-------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH
Confidence 34444455555544444444433332 222222334444555555555554444443322 1111123478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHhhhhhhhhhh---chHHHHhhhHHH--------
Q 011909 183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EADKDSWTQMES---VSKETIAGLSVD-------- 247 (475)
Q Consensus 183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L----kaERD~WLkkEI---sLke~ISsl~~E-------- 247 (475)
..-+.|..=-..|.-.+..|++.+..|.|+|...+.+.+.| ..-||.+--+-+ .+.+.++.-...
T Consensus 123 r~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~ 202 (305)
T PF14915_consen 123 RARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMY 202 (305)
T ss_pred HHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999889999999999999999999999999999988 555666533332 222222111111
Q ss_pred ------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 248 ------ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 248 ------iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
+..-...-..+++...++..++.-|+.+|+.++.....
T Consensus 203 qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 203 QNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222345566677777777777777777666554
No 42
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.70 E-value=0.056 Score=66.22 Aligned_cols=245 Identities=19% Similarity=0.250 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q 011909 86 AMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEAT------------- 152 (475)
Q Consensus 86 ~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~------------- 152 (475)
+...|.+++-.-....+.- ...+++.+|..+.+.|..++..+......+.-|-.+++.+-+..+.
T Consensus 547 ~vR~Lae~lE~~E~~~~~~--~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~ 624 (1822)
T KOG4674|consen 547 AVRELAEKLEAAEKTQDKT--LQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSA 624 (1822)
T ss_pred HHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchh
Confidence 5455555554444444333 3456777777777777777777777777777777777766333332
Q ss_pred ---------HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 153 ---------LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 153 ---------lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
++.++++|+....+. ...--+.+..++.++++...+...|..++.++..+-..-+.++.-|..-+..+
T Consensus 625 ~~~t~~~~~~e~~l~qLe~~le~~---~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~ 701 (1822)
T KOG4674|consen 625 LDQTEAPRAKEKRLRQLENELESY---KKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELT 701 (1822)
T ss_pred hcccccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666665532 22334455666666666666666677777777666666666666666666655
Q ss_pred HH------hhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh---
Q 011909 224 EA------DKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH--- 293 (475)
Q Consensus 224 ka------ERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~--- 293 (475)
++ +|..||+.-| +=+..+.....++.+....+..++.....|.+|...++.--..+..++.+|..+.-.-
T Consensus 702 K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~ 781 (1822)
T KOG4674|consen 702 KEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLL 781 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 6777877777 5555566666666666666666666666666666666555555555544444333111
Q ss_pred --------------hhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 294 --------------ATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 335 (475)
Q Consensus 294 --------------e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~ 335 (475)
.++...++..+|+.|...|.+|....+.-..++.+|...++.
T Consensus 782 l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~ 837 (1822)
T KOG4674|consen 782 LDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEK 837 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 134667777777777777777777666666666666655543
No 43
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.67 E-value=0.048 Score=62.46 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=60.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHH
Q 011909 177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQV 255 (475)
Q Consensus 177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEV 255 (475)
-|..|+..+..+.++-+.|..+++.|..+...-...+...++.+..++.|+.- ++.|| .++..+......+..|+..+
T Consensus 323 hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~-~~~Ei~~l~d~~d~~e~ki~~Lq~ki 401 (775)
T PF10174_consen 323 HIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSR-LQGEIEDLRDMLDKKERKINVLQKKI 401 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444445555543 77777 77777777777777777777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 011909 256 VELEESRNNLLQENRQLKENVSS 278 (475)
Q Consensus 256 keLEesr~eL~kEIqqLReqLde 278 (475)
..|++....-...+..++..+..
T Consensus 402 e~Lee~l~ekd~ql~~~k~Rl~~ 424 (775)
T PF10174_consen 402 ENLEEQLREKDRQLDEEKERLSS 424 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777777777666663
No 44
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.65 E-value=0.021 Score=55.31 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
++..+.+|+....+.......|..+-.+++.++..
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~ 99 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQS 99 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 45
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.63 E-value=0.17 Score=57.86 Aligned_cols=173 Identities=14% Similarity=0.086 Sum_probs=96.6
Q ss_pred HHHHHHHHhhhcchhhhh---------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 88 AILEETVKHLRNERESHI---------QKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK 158 (475)
Q Consensus 88 ~~~eeti~~l~~e~~~~~---------~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIK 158 (475)
+.+.||...-.-+|.+|| |.+.++.+.+-.|++.+..++..+..|+..-..++.+...+--.++.++..++
T Consensus 58 dalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~k 137 (1265)
T KOG0976|consen 58 DALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKK 137 (1265)
T ss_pred HHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554 77777777777777777777777777777777777776666666666666666
Q ss_pred HHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------
Q 011909 159 QLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ-------KEAALEQKISQLRDESAALNMKRASLEERLKLL-------- 223 (475)
Q Consensus 159 dLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~q-------Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~L-------- 223 (475)
+-+.+++..-.+--.+++.|.--..+|-.... ++..+..+|..+..+++.++..+..+-.+...-
T Consensus 138 e~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~s 217 (1265)
T KOG0976|consen 138 ENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKS 217 (1265)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 66666665555544444444444444443332 334455555555555555555444443333311
Q ss_pred -HHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHH
Q 011909 224 -EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEE 260 (475)
Q Consensus 224 -kaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEe 260 (475)
.--.+.-+.++| .-..+++++...+..+++-...+++
T Consensus 218 le~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E 256 (1265)
T KOG0976|consen 218 LELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEE 256 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHH
Confidence 111222244444 4445556666555555544444443
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.14 Score=57.90 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=82.5
Q ss_pred HHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh--h
Q 011909 219 RLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA--T 295 (475)
Q Consensus 219 Kl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e--~ 295 (475)
+.+.|..+++. |...| .++.....+...+..|.+++..|......+..++..+...+..+......++....-.. +
T Consensus 497 ~~k~L~~ek~~-l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ 575 (698)
T KOG0978|consen 497 KHKLLREEKSK-LEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIEL 575 (698)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444 45555 66666666666777777777777777777777777777777766666666555443222 2
Q ss_pred h----hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 011909 296 S----EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAG 341 (475)
Q Consensus 296 e----En~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~~~~ 341 (475)
+ .-+++..+...+...++.+.....+|+++...|..+|-......+
T Consensus 576 ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 576 EKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2 445677777788889999999999999999999998855544433
No 47
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.017 Score=65.66 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=76.0
Q ss_pred chhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh----------HHHH
Q 011909 100 ERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND----------LHIQ 169 (475)
Q Consensus 100 e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~----------s~~Q 169 (475)
++|..+|+ +...|+.++.++..+++....|+..+++|+.+..+..-..+.+......|+...+ .-.+
T Consensus 654 ~l~~~~~k---yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e 730 (970)
T KOG0946|consen 654 ELDDIQQK---YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAE 730 (970)
T ss_pred HHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHH
Confidence 34555555 8999999999999999999999999999999999999999999999999998877 2233
Q ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 170 REGGLEMNIANLQSEKEFWLQKEAALEQKI 199 (475)
Q Consensus 170 kea~Lee~I~qLq~EI~~~~qEla~L~pei 199 (475)
.-....+.++.+..++.....+...+..++
T Consensus 731 ~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 731 ASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456667777777777666655555555
No 48
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.55 E-value=0.12 Score=53.08 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=81.1
Q ss_pred HHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hhhhhh----
Q 011909 222 LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK--KLQHAT---- 295 (475)
Q Consensus 222 ~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~E--eal~e~---- 295 (475)
.++.+||.|+.-.-.+.-.++.+...+.-|..++...+...++|.-+....++.|-+-..-+..+... .+.|++
T Consensus 120 afqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e 199 (305)
T PF14915_consen 120 AFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIE 199 (305)
T ss_pred HHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999888899999999999999999999999999999999988888776443222222222 233431
Q ss_pred ----hhhh---hchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 296 ----SEQK---DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 337 (475)
Q Consensus 296 ----eEn~---~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~ 337 (475)
-|.. +.....+.+..-+-.++.+|.-|..-+.+...+.+...
T Consensus 200 ~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 200 HMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 22335566666777778888777766666666555444
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.51 E-value=0.22 Score=60.92 Aligned_cols=140 Identities=7% Similarity=0.087 Sum_probs=77.4
Q ss_pred HHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhh-
Q 011909 154 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ- 232 (475)
Q Consensus 154 E~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLk- 232 (475)
...+.+|........+.-..+.+++..++.++.....++..+..++..+......+..++..++..+..|...+ .|..
T Consensus 354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~-~~~~~ 432 (1486)
T PRK04863 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK-QLCGL 432 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 33344444444433333333333344444444443444444433343333344444444444444444443332 2332
Q ss_pred hhh---chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011909 233 MES---VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA 294 (475)
Q Consensus 233 kEI---sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e 294 (475)
..+ .|...+......+..+..++..++.....+...+..++.....+.+....+....|-..
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~ 497 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDV 497 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHH
Confidence 122 57777788888888888888888888888888888888888888777777666666543
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.50 E-value=0.021 Score=57.03 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
.|+.|+.+++.+.+....-....+.++.+.+.+-+....++..+.+|+..+.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~ 62 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS 62 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557777777777777777777777777777777777777777777666544
No 51
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.48 E-value=0.072 Score=62.96 Aligned_cols=174 Identities=18% Similarity=0.232 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhhcchhhhh-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 87 MAILEETVKHLRNERESHI-QKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 87 ~~~~eeti~~l~~e~~~~~-~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
.+=++|||.+|+.+-...- +.+++++..++.........+.+...|....++++.+.+.+-++...+-.....+-....
T Consensus 467 ~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk 546 (1317)
T KOG0612|consen 467 DKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRK 546 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3468899999877664444 466777777777776666666666666666666666666665555554332222222222
Q ss_pred HHHHHhhhhH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh
Q 011909 166 LHIQREGGLE----------MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 235 (475)
Q Consensus 166 s~~Qkea~Le----------e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI 235 (475)
........+. ...+.+-..|.+-..+-..+...+..|......+......+......+...|.. +..++
T Consensus 547 ~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~-~~e~~ 625 (1317)
T KOG0612|consen 547 QLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTE-ISEII 625 (1317)
T ss_pred HHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 2222211111 111122222222222223444444444444444444433333333333333333 33444
Q ss_pred -chHHHHhhhHHHHHHHHHHHHHhHHH
Q 011909 236 -VSKETIAGLSVDITQLRMQVVELEES 261 (475)
Q Consensus 236 -sLke~ISsl~~EiksLqeEVkeLEes 261 (475)
.++..|+++...+..+..++..+++.
T Consensus 626 ~~l~~~i~sL~~~~~~~~~~l~k~~el 652 (1317)
T KOG0612|consen 626 AELKEEISSLEETLKAGKKELLKVEEL 652 (1317)
T ss_pred HHHHhHHHHHHHHHHhhhhHHHHHHHH
Confidence 56666666666666555555555553
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.47 E-value=0.16 Score=60.74 Aligned_cols=162 Identities=23% Similarity=0.375 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh-HHHHHHHHHHHHHHHHHH
Q 011909 120 NECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN-LQSEKEFWLQKEAALEQK 198 (475)
Q Consensus 120 ~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q-Lq~EI~~~~qEla~L~pe 198 (475)
+....++..++.....+..+..+...+.......+..+..|+... ..+..++.. ++........++..+..+
T Consensus 621 ~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 693 (1201)
T PF12128_consen 621 ERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNER-------EQLKQEIEEAKEERKEQIEEQLNELEEE 693 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444433 333333222 222333344444444555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhh-hhhhhhhchHHHHhhhHHHHHHHHHH----HHHhHHHHHH------H-H
Q 011909 199 ISQLRDESAALNMKRASLEERLKLLEADKD-SWTQMESVSKETIAGLSVDITQLRMQ----VVELEESRNN------L-L 266 (475)
Q Consensus 199 iekL~~Ee~~LkqkLasLEeKl~~LkaERD-~WLkkEIsLke~ISsl~~EiksLqeE----VkeLEesr~e------L-~ 266 (475)
+..+..+-..+... +......+..++. .|...+-.+...|..+..++...+.+ +..++....+ . .
T Consensus 694 l~~~~~e~~~~~~~---~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 694 LKQLKQELEELLEE---LKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 54444444444332 2222333332222 22222225555555555555543333 3333332222 1 1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909 267 QENRQLKENVSSLRSQLSSDESKKL 291 (475)
Q Consensus 267 kEIqqLReqLdelqseiqsLE~Eea 291 (475)
..|..++.++..+..++..++....
T Consensus 771 ~~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2455555555555555555554443
No 53
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.42 Score=55.96 Aligned_cols=183 Identities=21% Similarity=0.239 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhhc----------chhhhhHHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 87 MAILEETVKHLRN----------ERESHIQKEATLEGTV-----QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA 151 (475)
Q Consensus 87 ~~~~eeti~~l~~----------e~~~~~~~e~~l~e~I-----kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA 151 (475)
++-+|+-|+-|++ +.++-..+=+++++.+ .++.+.+..+...+..+..+|+..+.-...+..+..
T Consensus 693 l~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~ 772 (1174)
T KOG0933|consen 693 LEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKIS 772 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655555544 3344444444444433 345555556666666666666665555555555555
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhh
Q 011909 152 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 231 (475)
Q Consensus 152 ~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WL 231 (475)
.+|-.+++-.... ..+-..+...|+.+....+....++..-..+|+.|.-+-.++.+.+...+..+.++...-+. |
T Consensus 773 ~lE~~~~d~~~~r---e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~-l 848 (1174)
T KOG0933|consen 773 TLEKKMKDAKANR---ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISS-L 848 (1174)
T ss_pred HHHHHHhHhhhhh---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 5555555443332 22222334444444443333333333222233333333333333333222222222221112 3
Q ss_pred hhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011909 232 QMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 273 (475)
Q Consensus 232 kkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLR 273 (475)
..|+ .+...+.....+...++.++.....-...++.++..+-
T Consensus 849 ~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~ 891 (1174)
T KOG0933|consen 849 KSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLL 891 (1174)
T ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhh
Confidence 3344 44444444444444555555554444444444443333
No 54
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.42 E-value=0.21 Score=56.87 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 246 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 246 ~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
.+|..|+.|+...+.+...|...++.++.+|+..+..++.
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~ 304 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSE 304 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888877777777777777777655555444
No 55
>PRK09039 hypothetical protein; Validated
Probab=97.41 E-value=0.014 Score=60.82 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=68.9
Q ss_pred HHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-
Q 011909 157 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES- 235 (475)
Q Consensus 157 IKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI- 235 (475)
|.+|-+..+........++..|..|+..+.......+.++..|..+......+..++..++.++..++. ++
T Consensus 62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~--------~~s 133 (343)
T PRK09039 62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQ--------VSA 133 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHH--------HHH
Confidence 333555555555555556666666666666555555555555554433334444445555444443332 33
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
.....|..++.+|..|+.++..|+.............+.+|+.++.++..
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777776666666666666666666666666555544
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.41 E-value=0.099 Score=53.84 Aligned_cols=150 Identities=20% Similarity=0.222 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 134 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 213 (475)
Q Consensus 134 etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL 213 (475)
.+.+.+=...=..+|.-|.++.+-.=++=.......-...|+..+..|+.+.......+..+.+-+..+....+.|..++
T Consensus 114 ~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~ 193 (325)
T PF08317_consen 114 PDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEEL 193 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333445556666655544444444444444556666777777777766666667776777777777776666
Q ss_pred HhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909 214 ASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 287 (475)
Q Consensus 214 asLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE 287 (475)
..+.+....+. .- =+.++ .++..|+.+..++...+.++.+++..+..+...|..+..+...+..++..++
T Consensus 194 ~~Lk~~~~e~~-~~---D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 194 ENLKQLVEEIE-SC---DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHhhhh-hc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655544431 11 12455 6777777777777777777777777777777777777777777776666644
No 57
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.40 E-value=0.079 Score=61.59 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=36.5
Q ss_pred hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909 297 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSV 338 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~ 338 (475)
++++|+...+-+...+..+.+.+++|++..+.|..+++....
T Consensus 409 e~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~ 450 (1195)
T KOG4643|consen 409 EHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE 450 (1195)
T ss_pred HhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999999999998888877655443
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.38 E-value=0.085 Score=59.92 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=29.5
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN 275 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReq 275 (475)
.++.....+..++..|+.+++..|+....++.+++.||.-
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777777777766653
No 59
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.38 E-value=0.079 Score=59.15 Aligned_cols=93 Identities=24% Similarity=0.211 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh---hHHHHHhHHHHHHHH
Q 011909 112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG---LEMNIANLQSEKEFW 188 (475)
Q Consensus 112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~---Lee~I~qLq~EI~~~ 188 (475)
+..+..|+.+++.+...+..+...++.+..............+.....++........--.. -+..|..|+.-++..
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666665544444332 345688888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRD 204 (475)
Q Consensus 189 ~qEla~L~peiekL~~ 204 (475)
.+++..|..+|+..+.
T Consensus 407 ~~rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 407 EQRLVELAQQWEKHRA 422 (594)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888776543
No 60
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.36 E-value=0.16 Score=49.33 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR 161 (475)
Q Consensus 114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe 161 (475)
.|.+|+..+..+..+...|+..+...++-...+....+.+...++.++
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655555555555555555553
No 61
>PRK01156 chromosome segregation protein; Provisional
Probab=97.35 E-value=0.49 Score=54.48 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=58.1
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 75 EAERQHLLQR--------EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR 146 (475)
Q Consensus 75 ~~~~~~~~~~--------~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~ 146 (475)
.++|..||.+ .+|+-+.++++.++.+ +..-..+...+..++.++..+..++..+...+..+.......
T Consensus 148 ~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~e----i~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~ 223 (895)
T PRK01156 148 PAQRKKILDEILEINSLERNYDKLKDVIDMLRAE----ISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERL 223 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567666643 2334444555554443 333334455556666666666666666666666666655555
Q ss_pred HHHHHhHHHHHHHHHhhhhHH---HHHhhhhHHHHHhHHHHHHHH
Q 011909 147 MQKEATLEETIKQLRNQNDLH---IQREGGLEMNIANLQSEKEFW 188 (475)
Q Consensus 147 LQkkA~lE~kIKdLe~~~~s~---~Qkea~Lee~I~qLq~EI~~~ 188 (475)
......+...+..|+...... ..+-..++.+|+.++..+..+
T Consensus 224 ~~el~~~~~~l~~l~~~l~~l~~~~~~~~~~e~~i~ele~~l~el 268 (895)
T PRK01156 224 SIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSME 268 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555443333 333334455555555554443
No 62
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.35 E-value=0.26 Score=52.49 Aligned_cols=199 Identities=9% Similarity=0.104 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 011909 117 QLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 196 (475)
Q Consensus 117 qLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~ 196 (475)
++...|..+..++...+..+.+.+.+++..-+.....-..-+-.+.......++.....+.+.++........+++..+.
T Consensus 78 di~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~ 157 (499)
T COG4372 78 DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666555554444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh-hhhh-h-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011909 197 QKISQLRDESAALNMKRASLEERLKLLEADKDSW-TQME-S-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 273 (475)
Q Consensus 197 peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W-LkkE-I-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLR 273 (475)
.++.+|..+..+|--.-..|+.-..+|+.++-.+ +..+ | --...+......+.++.+++..++-..-++..+|+++-
T Consensus 158 ~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd 237 (499)
T COG4372 158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333333333233332222110 0000 1 11223445555556666666666666666777777776
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHH
Q 011909 274 ENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI 316 (475)
Q Consensus 274 eqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~ 316 (475)
.+++..-.++.. ..+.....-+-.++|..++.+|.-.+..|.
T Consensus 238 ~~i~q~~q~iaa-r~e~I~~re~~lq~lEt~q~~leqeva~le 279 (499)
T COG4372 238 AQISQKAQQIAA-RAEQIRERERQLQRLETAQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555 222222223344555555555555554443
No 63
>PRK01156 chromosome segregation protein; Provisional
Probab=97.30 E-value=0.55 Score=54.08 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=5.0
Q ss_pred CcCCCchhHHHH
Q 011909 447 PLIGAPFRLVSF 458 (475)
Q Consensus 447 p~igapfrlisf 458 (475)
+|-|.--+.+++
T Consensus 801 ~lS~G~~~~~~l 812 (895)
T PRK01156 801 SLSGGEKTAVAF 812 (895)
T ss_pred cCCHhHHHHHHH
Confidence 344444444443
No 64
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.29 Score=57.94 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=23.3
Q ss_pred HHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 011909 91 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVAT 131 (475)
Q Consensus 91 eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~ 131 (475)
.+-|.=|+.||+...-+.-..+..+....+++.....++..
T Consensus 305 ~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~ 345 (1293)
T KOG0996|consen 305 NEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEK 345 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777766555555555555555555544444333
No 65
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.29 E-value=0.51 Score=53.47 Aligned_cols=169 Identities=17% Similarity=0.120 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909 114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 193 (475)
Q Consensus 114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla 193 (475)
.|++|++.+.....=++++.+-|..|+.+...+-+-++-.|..=|.++..++-+.-......+...+++..++.+..+..
T Consensus 475 iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~ 554 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQAL 554 (961)
T ss_pred HHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34555555554444445555555555555555555555555555555555444443333334444444455555444443
Q ss_pred HHHHHHHHH---------------HHHHHHHHHHHHhHHHHHHHH---HHhhhhhhhhhh-chHHHHhhhHHHHHH----
Q 011909 194 ALEQKISQL---------------RDESAALNMKRASLEERLKLL---EADKDSWTQMES-VSKETIAGLSVDITQ---- 250 (475)
Q Consensus 194 ~L~peiekL---------------~~Ee~~LkqkLasLEeKl~~L---kaERD~WLkkEI-sLke~ISsl~~Eiks---- 250 (475)
.+..-+..+ ..+...|-+++..|-.+++.- -+-|..++..|| .|.+.+..-..-+..
T Consensus 555 a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 555 AEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333322222 222233333333333333322 455777899999 898888654444433
Q ss_pred -------HHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHhh
Q 011909 251 -------LRMQVVELEE----SRNNLLQENRQLKENVSSLRSQ 282 (475)
Q Consensus 251 -------LqeEVkeLEe----sr~eL~kEIqqLReqLdelqse 282 (475)
|..+|..|.. ....|..+-+.|.++|+..+..
T Consensus 635 v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtl 677 (961)
T KOG4673|consen 635 VPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTL 677 (961)
T ss_pred ccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHH
Confidence 4455555444 5567888889999999854443
No 66
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.27 E-value=0.76 Score=56.43 Aligned_cols=128 Identities=10% Similarity=0.030 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011909 140 QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEER 219 (475)
Q Consensus 140 e~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeK 219 (475)
..+...+......++.++.++.............++.++..++.++..+..+++.+...+..+..+...+.+.+..++.-
T Consensus 347 q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 347 QEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555666666665555556666666666666666666666666666666666666666666655554
Q ss_pred HHHHH--Hhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 220 LKLLE--ADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ 267 (475)
Q Consensus 220 l~~Lk--aERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~k 267 (475)
...+. .=-+.||...+ .....+..+..++..+..++..++.....+.+
T Consensus 427 ~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 427 KQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44441 22233444444 44444444444444444444444444444333
No 67
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.25 E-value=0.51 Score=53.45 Aligned_cols=240 Identities=25% Similarity=0.245 Sum_probs=129.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhhcch--------------hhhhHHHhhHHHHHHHHHHHHHHHHHH------------
Q 011909 76 AERQHLLQRE-AMAILEETVKHLRNER--------------ESHIQKEATLEGTVQQLQNECDLYKEK------------ 128 (475)
Q Consensus 76 ~~~~~~~~~~-~~~~~eeti~~l~~e~--------------~~~~~~e~~l~e~IkqLq~El~~lk~k------------ 128 (475)
|--+++++-| +-++++|...++..+- +-..|+=+.|++.++-+-.+-+.+.++
T Consensus 364 aReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l 443 (961)
T KOG4673|consen 364 AREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAAL 443 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 4456676655 3457888666655443 445677777777776665555544433
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHH------------
Q 011909 129 ----VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE------------ 192 (475)
Q Consensus 129 ----l~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEl------------ 192 (475)
|+...+-|++|..+=..+.++...-.--||.|+-....+.--....-+.|..|++|-...++=+
T Consensus 444 ~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E 523 (961)
T KOG4673|consen 444 LKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQE 523 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444556677777777788888777888888887776666555555555555555544333222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh---hhhhhchH-----HHHhhhHHHHHHHHHHHHHhHHHH
Q 011909 193 --AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW---TQMESVSK-----ETIAGLSVDITQLRMQVVELEESR 262 (475)
Q Consensus 193 --a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W---LkkEIsLk-----e~ISsl~~EiksLqeEVkeLEesr 262 (475)
.++..++....+.++.+.-..+.++++...+++.-|.. |+++..++ ..-+.+-.++..|+.-+..-|.
T Consensus 524 ~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq-- 601 (961)
T KOG4673|consen 524 TIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQ-- 601 (961)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 22333333444444444455666777777776666553 33444333 2222333333333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhh--hhhh-hhhhhhchHHHHHHHhHHHHHHHH
Q 011909 263 NNLLQENRQLKENVSSLRSQLSSDESKK--LQHA-TSEQKDFSTQIEAAGALIDKLITE 318 (475)
Q Consensus 263 ~eL~kEIqqLReqLdelqseiqsLE~Ee--al~e-~eEn~~Ls~E~E~l~s~vekL~~e 318 (475)
++...-+.+|..+..++.+++.-+... ...+ -+-.+=|-+|||.+...+.+..+-
T Consensus 602 -~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~ta 659 (961)
T KOG4673|consen 602 -QAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATA 659 (961)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhH
Confidence 122223344444444444444422211 1111 135667788888888888777543
No 68
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.24 E-value=0.07 Score=53.42 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
..+.....++..++.++.++..+...+..++...+.++
T Consensus 45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 45 KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444555554444
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.24 E-value=0.024 Score=58.36 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
+++..+..|+..+..+....+.|......+..-...+....+.++.++..|+....
T Consensus 146 ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 146 LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555666666666666666666666666666666666666666665543
No 70
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.23 E-value=0.14 Score=55.50 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcch---hhhhH----HHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 011909 77 ERQHLLQREAMAILEETVKHLRNER---ESHIQ----KEATLEGTVQQLQNECDLYK---EKVATLEETIQQLQRQNDLR 146 (475)
Q Consensus 77 ~~~~~~~~~~~~~~eeti~~l~~e~---~~~~~----~e~~l~e~IkqLq~El~~lk---~kl~~L~etikQLe~d~~~~ 146 (475)
|..+-+ .|+|| |-|+|++|+..| .+.|| .-..|++.|+.||..+..-. .=+..|...+..|=+|.=..
T Consensus 304 Eslqpl-eedma-LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~v 381 (527)
T PF15066_consen 304 ESLQPL-EEDMA-LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRV 381 (527)
T ss_pred hccCCc-HHHHH-HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHh
Confidence 555556 46665 789999999887 44444 24567777777777665332 22233333444444444444
Q ss_pred HHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909 147 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 226 (475)
Q Consensus 147 LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE 226 (475)
+=.+..++-+++.|+.. -+.....|..-+.++..+..++-.|+..|-.|+++....-| .
T Consensus 382 iLEKnd~~k~lqnLqe~-------la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQ--------------q 440 (527)
T PF15066_consen 382 ILEKNDIEKTLQNLQEA-------LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQ--------------Q 440 (527)
T ss_pred hhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------H
Confidence 44444445555555443 33334456666778888888888888888888877665433 3
Q ss_pred hhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHH
Q 011909 227 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEES 261 (475)
Q Consensus 227 RD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEes 261 (475)
|+..+..=+.+.+.++....++..|+.--.+||.+
T Consensus 441 KnksvsqclEmdk~LskKeeeverLQ~lkgelEka 475 (527)
T PF15066_consen 441 KNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKA 475 (527)
T ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 44555555566667777666666666666666643
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.12 Score=58.92 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=64.0
Q ss_pred HHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Q 011909 155 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 234 (475)
Q Consensus 155 ~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkE 234 (475)
.+.+.|+.+.+..--+-..|..+|--++-.|..-..+++.+....+....+-..|.+++-++.+++..|--||..|=++=
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33444444444433333444444444444444445555555555555566666666666666666666655555541110
Q ss_pred -------------h-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 235 -------------S-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 282 (475)
Q Consensus 235 -------------I-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse 282 (475)
. .|+.-.......+..++.++.+|+.+..+-..+|..+..++++++..
T Consensus 517 kq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 517 KQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred HHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1 23333333334444555555555555555555555555555555443
No 72
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.96 Score=53.82 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=17.2
Q ss_pred CCceeeccCCCccchhhhhhcccc
Q 011909 410 SGEIVQIPLDDKEVQDLELQVVES 433 (475)
Q Consensus 410 ~~eiv~~~ld~~~~~~~~~q~~~~ 433 (475)
-|----|+||-+..|.-.++++-.
T Consensus 666 LgraTFi~LDki~~~~~~l~~i~t 689 (1293)
T KOG0996|consen 666 LGRATFIILDKIKDHQKKLAPITT 689 (1293)
T ss_pred CCceeEEehHhhhhhhhccCCCCC
Confidence 455567899999887777777443
No 73
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.24 Score=54.87 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 142 QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 206 (475)
Q Consensus 142 d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee 206 (475)
-...+-++.+.++..+..++.-+....++...+...|..|+.||..++.+...|..+...|++..
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777788888888877788777888888888887777777666666666665543
No 74
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.14 E-value=0.72 Score=52.22 Aligned_cols=169 Identities=18% Similarity=0.242 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909 109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 188 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~ 188 (475)
.+.++.|.+|...+.........-.....+|..++...-=+-+.+=.....|...+..-.|.-....-.++.++..|...
T Consensus 446 q~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~ 525 (786)
T PF05483_consen 446 QIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNS 525 (786)
T ss_pred HhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34556666666666655555554444555555554443333333334444555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHhhh-hhhhhhh-chHHHHhhhHHHHHHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLL---------EADKD-SWTQMES-VSKETIAGLSVDITQLRMQVVE 257 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L---------kaERD-~WLkkEI-sLke~ISsl~~EiksLqeEVke 257 (475)
......+..+++.|...+..|+-.+.++-.++..- +.+-+ .-+--|+ .....+..+...+..|+++|..
T Consensus 526 k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEn 605 (786)
T PF05483_consen 526 KKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVEN 605 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666655555554444443333322 11111 0011222 3333444444445555555554
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 011909 258 LEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 258 LEesr~eL~kEIqqLReqLd 277 (475)
-......|..++..|+.++.
T Consensus 606 k~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 606 KNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 44444445555544444444
No 75
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.14 E-value=0.41 Score=49.37 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=37.5
Q ss_pred HHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 93 ti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
-+..|+...+-|+.+-..+...+..+..+-+.+..++.-+-+.+..+..+++..+..+..+-.+-.++..
T Consensus 14 K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 14 KRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555556666666666666666655555555555555555555555555555554444444443333
No 76
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.09 E-value=0.45 Score=49.06 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909 114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 193 (475)
Q Consensus 114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla 193 (475)
.+.+|...+..+..+- ..|..+...+..+.-.+-.+++++.....++...+..+.+++.+|+..-+.+..++.
T Consensus 14 K~~~lk~~~~e~~ekR-------~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~ 86 (294)
T COG1340 14 KRKQLKEEIEELKEKR-------DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQ 86 (294)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333 445555555555555666677888888888888888999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHhHHHHHHHH
Q 011909 194 ALEQKISQLRDESAAL---NMKRASLEERLKLL 223 (475)
Q Consensus 194 ~L~peiekL~~Ee~~L---kqkLasLEeKl~~L 223 (475)
.+-..|..+....+.. ...+..++..++.|
T Consensus 87 eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~L 119 (294)
T COG1340 87 ELRKEYRELKEKRNEFNLGGRSIKSLEREIERL 119 (294)
T ss_pred HHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Confidence 8888888888887744 23344555555555
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.05 E-value=0.061 Score=49.63 Aligned_cols=123 Identities=20% Similarity=0.349 Sum_probs=58.8
Q ss_pred hhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHH
Q 011909 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM 176 (475)
Q Consensus 97 l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee 176 (475)
|+-|.|.-+-+=..++..+++|..++....+++..|...+.+|+.+.+.+-.....+...+.+-......
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~---------- 74 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN---------- 74 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----------
Confidence 4444455555555556666666666666666666655555555555554444443333333332222111
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 011909 177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 230 (475)
Q Consensus 177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W 230 (475)
..+|...|.....++......+............+...++-++..|..+|+.|
T Consensus 75 -~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~ 127 (143)
T PF12718_consen 75 -AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQW 127 (143)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence 11344444444444444444444444444444444444444444454455554
No 78
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.05 E-value=0.53 Score=51.38 Aligned_cols=247 Identities=15% Similarity=0.201 Sum_probs=152.7
Q ss_pred HHHhhhcchhhh---hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909 93 TVKHLRNERESH---IQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 169 (475)
Q Consensus 93 ti~~l~~e~~~~---~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q 169 (475)
-|-.|+++|+-. ||.---+-..|+.|++.-..++..+..++...++++.....|.-+...+...|..-++.+.+...
T Consensus 272 ~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~ 351 (622)
T COG5185 272 DIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQS 351 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777543 44444566778888888889999999999999999999999999999999999988888888888
Q ss_pred HhhhhHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHhhhhhhhh--
Q 011909 170 REGGLEMNIAN----------LQSEKEFWLQKEAALEQKISQLRDESAALNM----KRASLEERLKLLEADKDSWTQM-- 233 (475)
Q Consensus 170 kea~Lee~I~q----------Lq~EI~~~~qEla~L~peiekL~~Ee~~Lkq----kLasLEeKl~~LkaERD~WLkk-- 233 (475)
++..|..+|.. .-.|......+|..|.++..+|......-+. ...+++.+++.+..=++.....
T Consensus 352 ~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~ 431 (622)
T COG5185 352 NIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRS 431 (622)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 88888877654 3456667788999999999999887654432 4557777777774433322111
Q ss_pred -------------------hh--chHHHHhhhHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909 234 -------------------ES--VSKETIAGLSVDIT-QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 291 (475)
Q Consensus 234 -------------------EI--sLke~ISsl~~Eik-sLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eea 291 (475)
++ .++..|.....++. ..+..++.-+.....|.+.+..++.-+.++.+.+..++.+.+
T Consensus 432 ~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~ 511 (622)
T COG5185 432 QIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELS 511 (622)
T ss_pred HHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHH
Confidence 01 12222222211111 222223322222222344444444444444444333333332
Q ss_pred hh-------h---hhhhhhchHHHHHHHhHHHHH-H---HHHHHHHHHHHHHHHhhhhhhhh
Q 011909 292 QH-------A---TSEQKDFSTQIEAAGALIDKL-I---TENIELVEKVNDLSVKLDRQSVA 339 (475)
Q Consensus 292 l~-------e---~eEn~~Ls~E~E~l~s~vekL-~---~enq~LeEe~neL~~~l~~~~~~ 339 (475)
.+ . -+|......|+|.+-..+.+| . ..--++++.++...++||+.-++
T Consensus 512 ~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~ 573 (622)
T COG5185 512 EANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVD 573 (622)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHH
Confidence 22 1 235566677787777777766 2 22335667788888888776554
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.02 E-value=0.8 Score=50.69 Aligned_cols=157 Identities=13% Similarity=0.190 Sum_probs=97.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLR 252 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLq 252 (475)
++.+|..++..+.....-+..+ ++......+..+..+++.+-..+..-...|.. +.+.. .+...|......+..|.
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~-vek~~~~l~~~l~~~~e~~~~l~ 330 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKY-VEKNSDTLPDFLEHAKEQNKELK 330 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHH
Confidence 5666666777666666656555 55566666666666666666666655666666 55555 88888888888999999
Q ss_pred HHHHHhHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh------hhhhhhchHHHHHHHhHHHHHH
Q 011909 253 MQVVELEES----------RNNLLQENRQLKENVSSLRSQLSSDESKKLQHA------TSEQKDFSTQIEAAGALIDKLI 316 (475)
Q Consensus 253 eEVkeLEes----------r~eL~kEIqqLReqLdelqseiqsLE~Eeal~e------~eEn~~Ls~E~E~l~s~vekL~ 316 (475)
.++..+..+ ...+.+++..+...+......+........... .+.-..+..+...+...+..|.
T Consensus 331 ~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 331 EEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888 666666666666666655444443222211111 1234445555555555666665
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011909 317 TENIELVEKVNDLSVKL 333 (475)
Q Consensus 317 ~enq~LeEe~neL~~~l 333 (475)
..-......+..++.+|
T Consensus 411 k~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 411 KDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555544
No 80
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.00 E-value=1.1 Score=52.35 Aligned_cols=120 Identities=15% Similarity=0.162 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH---------------HHHHhhhhHHHHH
Q 011909 115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL---------------HIQREGGLEMNIA 179 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s---------------~~Qkea~Lee~I~ 179 (475)
..++.+.+++++..-+..++.-.-|+.+...+-.+.-.++..+.=|+.++.. .++..+.|.+.+.
T Consensus 306 mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalV 385 (1243)
T KOG0971|consen 306 MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALV 385 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333333444444444444444444444444333221 2344455666666
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Q 011909 180 NLQSEKEFWLQKE-------AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 234 (475)
Q Consensus 180 qLq~EI~~~~qEl-------a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkE 234 (475)
+|+.-.+.-.+.- .....+++.|.....-|..+++.+|.+|.-||.-=|.-|-.|
T Consensus 386 rLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE 447 (1243)
T KOG0971|consen 386 RLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAE 447 (1243)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH
Confidence 6665444433333 333444444444444455566666666666665555544333
No 81
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.00 E-value=0.24 Score=48.14 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=40.8
Q ss_pred HHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEAT 152 (475)
Q Consensus 92 eti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~ 152 (475)
+.|+.|+++..-.-.++.-.++.+.++..++..+..-+..+..+...|+.+...+-+.+..
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~ 87 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777666667777777777777777777766666666666666666665555544
No 82
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.99 E-value=0.00017 Score=82.75 Aligned_cols=182 Identities=19% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHH
Q 011909 103 SHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 182 (475)
Q Consensus 103 ~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq 182 (475)
.+++.|+.+...-+...+.+..+...+..++..+..|+.++..+-.....+...+..+...........-.++.+|..|+
T Consensus 114 ~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~ 193 (859)
T PF01576_consen 114 ANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQ 193 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Confidence 34444554444444444444444444444333333333333333333333333333333333333333334555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh---------------chHHHHhhhHHH
Q 011909 183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES---------------VSKETIAGLSVD 247 (475)
Q Consensus 183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI---------------sLke~ISsl~~E 247 (475)
..++.....+..+.....+|..++..|...+...+.++..|...+..| ..++ .|...+..+..+
T Consensus 194 ~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L-~~qLeelk~~leeEtr~k~~L~~~l~~le~e 272 (859)
T PF01576_consen 194 AKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSL-ESQLEELKRQLEEETRAKQALEKQLRQLEHE 272 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHhHhhhhhhhHHHHHHHHHH
Confidence 555555666666666666777777777777777776666664444442 2222 344455566666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 248 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 248 iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
+..|+.++.+-..++..|...+..+...|..|+..+..
T Consensus 273 ~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~ 310 (859)
T PF01576_consen 273 LEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEE 310 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666666666666666666666666555444
No 83
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.99 E-value=0.81 Score=50.31 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=55.1
Q ss_pred CCCCcchhhhHHHHHHHHHHH--HHHHHHHHHHHhhhcchhhhhH---HHhhHHHHHHHH------------HHHH----
Q 011909 64 QSNGAESANLAEAERQHLLQR--EAMAILEETVKHLRNERESHIQ---KEATLEGTVQQL------------QNEC---- 122 (475)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~eeti~~l~~e~~~~~~---~e~~l~e~IkqL------------q~El---- 122 (475)
.+.-++..+.+|.+|...+.- .|-.+.++.=.+|+.-.....+ ---+.+--++.+ +.++
T Consensus 43 l~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~ 122 (522)
T PF05701_consen 43 LAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAR 122 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHH
Confidence 344466777888888877753 3434555554455543322211 111111122222 2222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh
Q 011909 123 ---DLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN 180 (475)
Q Consensus 123 ---~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q 180 (475)
.....+|.....+..+++.++...+..+.....+..+.......+..+-..|-.+|..
T Consensus 123 ~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~ 183 (522)
T PF05701_consen 123 EQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIA 183 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222445555555666666666666555554444444444444444444443333333
No 84
>PRK11281 hypothetical protein; Provisional
Probab=96.99 E-value=0.093 Score=62.36 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=30.3
Q ss_pred hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 295 TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 331 (475)
Q Consensus 295 ~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~ 331 (475)
.+.|+.|+.++..++..++.+.+++.+-+.-+..+.-
T Consensus 284 ~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q 320 (1113)
T PRK11281 284 LEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQ 320 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999988777776655544
No 85
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.98 E-value=0.2 Score=48.69 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHH
Q 011909 113 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 192 (475)
Q Consensus 113 e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEl 192 (475)
..|+.|.+++...+............+..++..+..-.+.++..+..|+......... . ..+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd--------------K----~~L 88 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD--------------K----QSL 88 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------H----HHH
Confidence 4577777777777777777777777777777777777777777776666665443333 2 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 011909 193 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL 266 (475)
Q Consensus 193 a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~ 266 (475)
..++.++..+..+-..|+..-..|+.+...|..|||.|..+-. .+...-..-...+.-|...+..|........
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ke 163 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKE 163 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555555666777655544 3333333333333344444444444433333
No 86
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.97 E-value=0.57 Score=52.38 Aligned_cols=187 Identities=19% Similarity=0.154 Sum_probs=96.7
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 102 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEE----------------TIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 102 ~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~e----------------tikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
.--++-.-.++-.|+.|...+..+.+.+..-.. .-..|.++....-.+.-.++.+|..|+..+.
T Consensus 134 ~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~ 213 (629)
T KOG0963|consen 134 NNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIE 213 (629)
T ss_pred HHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666677777776666544433222 1122222222333333444455555544444
Q ss_pred HHHHHhhhhHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHhhhhh
Q 011909 166 LHIQREGGLEMN----IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-----------EADKDSW 230 (475)
Q Consensus 166 s~~Qkea~Lee~----I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L-----------kaERD~W 230 (475)
.+.-....+..+ ..-...++.....+++.-...+..|..+...|..+++..-.....= -.-+|.-
T Consensus 214 ~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~ 293 (629)
T KOG0963|consen 214 DTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSE 293 (629)
T ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHH
Confidence 444333333333 5556666666677777777777777777777776666433332211 1112221
Q ss_pred hhhhh--chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011909 231 TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 290 (475)
Q Consensus 231 LkkEI--sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Ee 290 (475)
+ ..+ +++..-+++..++.....+|..|+........++..++.+|... +....+..+.
T Consensus 294 i-~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~EL 353 (629)
T KOG0963|consen 294 I-AQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKEL 353 (629)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHH
Confidence 1 111 33333355555666666677777777777777777777777654 4444444444
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.90 E-value=0.63 Score=50.15 Aligned_cols=174 Identities=16% Similarity=0.119 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHH-------
Q 011909 112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE------- 184 (475)
Q Consensus 112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~E------- 184 (475)
++.-.+|+.+|..++.++..+...+.+...++...-+.++.++..|..|+... .+++..|...|.-++..
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La~~L~A~~r~g~~p~~~ 134 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRLAEQLAALQRSGRNPPPA 134 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCCCCch
Confidence 33344444444444444444444455555555555555555555555555554 34444555555555542
Q ss_pred --HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHH
Q 011909 185 --KEFWL-QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES 261 (475)
Q Consensus 185 --I~~~~-qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEes 261 (475)
+.... +.-..+.--|. .-+-...+.+..+...+..|.+.|..-..+.-.++..++.+..+...|..-+.+-..-
T Consensus 135 ll~~~eda~~~~R~ai~~~---~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~ 211 (420)
T COG4942 135 LLVSPEDAQRSVRLAIYYG---ALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKT 211 (420)
T ss_pred hhcChhhhhHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00111211122 2223344444555555555544333322222244445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909 262 RNNLLQENRQLKENVSSLRSQLSSDESKKL 291 (475)
Q Consensus 262 r~eL~kEIqqLReqLdelqseiqsLE~Eea 291 (475)
...+..++...+.++.+++..=..|+.+++
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 212 LAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555555555555444444444443
No 88
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.88 E-value=0.076 Score=49.22 Aligned_cols=86 Identities=24% Similarity=0.247 Sum_probs=50.8
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhH
Q 011909 233 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGAL 311 (475)
Q Consensus 233 kEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~ 311 (475)
.+| .|+..|..+...+..|..++..+-+.+..|.++.+..+.++..+.+...++..-.-..+.+ .....+.+...
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e----k~q~~e~~~~~ 127 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE----KVQLKEESKSA 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 555 6666666666666667777777777777777777777777777666655544433322211 23334455555
Q ss_pred HHHHHHHHHHH
Q 011909 312 IDKLITENIEL 322 (475)
Q Consensus 312 vekL~~enq~L 322 (475)
|+.|+.+..+|
T Consensus 128 ve~L~~ql~~L 138 (140)
T PF10473_consen 128 VEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHhhh
Confidence 66666554443
No 89
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.85 E-value=0.00026 Score=81.23 Aligned_cols=191 Identities=19% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909 148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA-LEQKISQLRDESAALNMKRASLEERLKLLEAD 226 (475)
Q Consensus 148 QkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~-L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE 226 (475)
.....++..+..|+...+........++.+|..+..++..|..+... ....++.|......+..++..++..+..+.+.
T Consensus 264 ~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~ 343 (859)
T PF01576_consen 264 KQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAK 343 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666667777888888888999999888855 44446677777777777777777777777666
Q ss_pred hhhh------hhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh-----
Q 011909 227 KDSW------TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA----- 294 (475)
Q Consensus 227 RD~W------LkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e----- 294 (475)
.+.| |..|+ ++...+......+..|.+....++.....|......+...++.+......+..+++...
T Consensus 344 ~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee 423 (859)
T PF01576_consen 344 VSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEE 423 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH
Confidence 6665 55666 66666665555555555555555555555544444444444444444333333332221
Q ss_pred --------hhhhhhchHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909 295 --------TSEQKDFSTQI-------EAAGALIDKLITENIELVEKVNDLSVKLDRQSV 338 (475)
Q Consensus 295 --------~eEn~~Ls~E~-------E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~ 338 (475)
-.+|+.|..++ .-.+..|..|...+++|+.++.+|...|+-...
T Consensus 424 ~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~ 482 (859)
T PF01576_consen 424 LQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAED 482 (859)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01444444444 444445666777788888888887776654433
No 90
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=1.1 Score=49.84 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=22.4
Q ss_pred hhhhchHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHhhhhhh
Q 011909 297 EQKDFSTQIEAAGALIDKL-----ITENIELVEKVNDLSVKLDRQS 337 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL-----~~enq~LeEe~neL~~~l~~~~ 337 (475)
|++||.-+++.+.+.++.. +++ .||+|-+--|...-+|.+
T Consensus 202 eikRleEe~elln~q~ee~~~Lk~IAe-kQlEEALeTlq~EReqk~ 246 (772)
T KOG0999|consen 202 EIKRLEEETELLNSQLEEAIRLKEIAE-KQLEEALETLQQEREQKN 246 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence 5666666666666655543 333 367776655555444443
No 91
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.83 E-value=0.62 Score=53.93 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHH---HHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 137 QQLQRQNDLRMQKEATLEETI---KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 213 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kI---KdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL 213 (475)
.+|+.+...........|--. .+.+........+=..+.+.+.+|..+....+++.+.+..+++.-..-........
T Consensus 389 eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~ 468 (980)
T KOG0980|consen 389 EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEEN 468 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345554444444444444433 55555555555555556666777777777777777777777766666666666677
Q ss_pred HhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 214 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 278 (475)
Q Consensus 214 asLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLde 278 (475)
..|...+..++.+++.|..+--+....+.++..+...|..+++.|+.....+...-.....+++.
T Consensus 469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~ 533 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLED 533 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 77777777778888888776666777777777777777777777777655554444444444443
No 92
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.82 E-value=0.68 Score=55.32 Aligned_cols=37 Identities=5% Similarity=0.143 Sum_probs=28.6
Q ss_pred hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 295 TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 331 (475)
Q Consensus 295 ~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~ 331 (475)
.+.|+.|+.++...+..++.+.+++.+-+.-+..+.-
T Consensus 264 ~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q 300 (1109)
T PRK10929 264 FKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQ 300 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999988888888776665544443
No 93
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.80 E-value=1 Score=48.65 Aligned_cols=31 Identities=10% Similarity=0.266 Sum_probs=18.9
Q ss_pred hchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 300 DFSTQIEAAGALIDKLITENIELVEKVNDLS 330 (475)
Q Consensus 300 ~Ls~E~E~l~s~vekL~~enq~LeEe~neL~ 330 (475)
.|..++..-...++.|.+.-..|..++..+.
T Consensus 214 ~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 214 QLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455555555666666666666666666665
No 94
>PRK09039 hypothetical protein; Validated
Probab=96.79 E-value=0.3 Score=50.98 Aligned_cols=123 Identities=18% Similarity=0.200 Sum_probs=74.6
Q ss_pred HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011909 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 168 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~ 168 (475)
||.++|..++.+.+- |+..|.+|-+-+..-......|+..+.+++.++..+...++.++.-+....
T Consensus 43 fLs~~i~~~~~eL~~-------L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~------- 108 (343)
T PRK09039 43 FLSREISGKDSALDR-------LNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELA------- 108 (343)
T ss_pred HHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence 556666665555432 333455555555555566666677777777777766666666665544321
Q ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011909 169 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 225 (475)
Q Consensus 169 Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lka 225 (475)
.....++.++..++.+.......-+..-|++..|+.+.++|+.+++.+++.|..++.
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112344555666666666666666667777777777777777777777766665543
No 95
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.79 E-value=1.2 Score=49.05 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 140 QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM---NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 216 (475)
Q Consensus 140 e~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee---~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL 216 (475)
+.++..|-......+.++..|.........-+..|.. .|..|+.++..+.. ..+.... ........+...+..+
T Consensus 210 ~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~--~~l~~~~-~~~~~~~~~~~~l~s~ 286 (522)
T PF05701_consen 210 EQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE--SKLEEEA-EAKEKSSELQSSLASA 286 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhH-HhhhhhhhHHHHHHHH
Confidence 3455555556666677777777766444443333332 23333333333222 0111100 1112222222223333
Q ss_pred HHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909 217 EERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 287 (475)
Q Consensus 217 EeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE 287 (475)
...+...+..=+. ++.|+ .|...+.++..++...+.++..+..........+..|...|..+++++..+.
T Consensus 287 ~~ELe~ak~~L~~-~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 287 KKELEEAKKELEK-AKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 3333333222222 33344 5555555555555555555555555555555555555555555555554433
No 96
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.9 Score=52.32 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=41.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHH
Q 011909 108 EATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA 179 (475)
Q Consensus 108 e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~ 179 (475)
+.+.++...+++.-+..|+--+..+.-++.+++.....+-.....++.++.++.+.+..+...-..|.-++.
T Consensus 645 ~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 645 TQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566666677666666666666666666666655555555555555555555555544444444444444
No 97
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.73 E-value=0.0016 Score=73.27 Aligned_cols=141 Identities=23% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcchhhhhH---HHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Q 011909 89 ILEETVKHLRNERESHIQ---KEATLEGTVQQLQNECDLY---KEKVATLEETIQQLQRQNDLRMQKEAT---------- 152 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~---~e~~l~e~IkqLq~El~~l---k~kl~~L~etikQLe~d~~~~LQkkA~---------- 152 (475)
-+|.+.++|..|+.-+.+ .--+|++....|+..+..+ ..++..++..+..|+.++..|..-...
T Consensus 261 ~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~ 340 (722)
T PF05557_consen 261 ELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPED 340 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 345555555555543322 3346777777777777743 377777777888888888887542222
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909 153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 229 (475)
Q Consensus 153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~ 229 (475)
+--.|..|+...-....+...+...+..++..+.....+...+.+++..+......++.....|+.++..+..|||.
T Consensus 341 l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~ 417 (722)
T PF05557_consen 341 LARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDY 417 (722)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333333333333344444444444444444444444444444444333333333333333333333333
No 98
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.73 E-value=1.6 Score=49.68 Aligned_cols=187 Identities=15% Similarity=0.184 Sum_probs=124.2
Q ss_pred HHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHh
Q 011909 92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE 171 (475)
Q Consensus 92 eti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qke 171 (475)
-+|..|+.....-..++--.-..+.+|..++..-+-+-..|......|..++....|....+-..++.++..+..+..++
T Consensus 450 kev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qe 529 (786)
T PF05483_consen 450 KEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQE 529 (786)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444444444445555556677888888888766666666667788888888888888888888888888888888888
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------HHhhhhhhhhhh-c
Q 011909 172 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--------------EADKDSWTQMES-V 236 (475)
Q Consensus 172 a~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L--------------kaERD~WLkkEI-s 236 (475)
..+-.+|..|.......--++..+..++.+-.+ .++-++...+...+.+ ....+ .|++.| .
T Consensus 530 e~~~kqie~Lee~~~~Lrneles~~eel~~k~~---Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~-~LrKqvEn 605 (786)
T PF05483_consen 530 EKMLKQIENLEETNTQLRNELESVKEELKQKGE---EVKCKLDKSEENARSIECEILKKEKQMKILENKCN-NLRKQVEN 605 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHH
Confidence 887777777777777765555555554444333 4444444444443333 22222 266666 6
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 282 (475)
Q Consensus 237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse 282 (475)
....|..+..++..|++++..--...+.+.-.|..|+..+..+...
T Consensus 606 k~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~ 651 (786)
T PF05483_consen 606 KNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKK 651 (786)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6667777788888888887776666666666666666666655443
No 99
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.68 E-value=0.75 Score=50.92 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=16.6
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
.+...+..-...+..+..++.+.......+..+...|.+...
T Consensus 459 ~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~ 500 (569)
T PRK04778 459 ALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENAT 500 (569)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444433333
No 100
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.60 E-value=1.8 Score=48.62 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909 114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 193 (475)
Q Consensus 114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla 193 (475)
.+..|+.++..+..+.+.+..++.+++.+.+.+-++...++..++. ......+.+..++.++..++.+......++.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~---~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS---EGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333333332222 3334444455666666666666665555553
No 101
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.55 E-value=0.00058 Score=76.69 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909 130 ATLEETIQQLQRQNDLRMQKEATLEETIKQ 159 (475)
Q Consensus 130 ~~L~etikQLe~d~~~~LQkkA~lE~kIKd 159 (475)
..+....+.|+.++..+++..+.+|..++.
T Consensus 328 ~~lk~qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 328 EDLKRQVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666777777777777766655
No 102
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.49 E-value=2.1 Score=48.16 Aligned_cols=125 Identities=19% Similarity=0.158 Sum_probs=70.6
Q ss_pred HHHHHHHHhhhhHHHHHhhh-----------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909 154 EETIKQLRNQNDLHIQREGG-----------LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 222 (475)
Q Consensus 154 E~kIKdLe~~~~s~~Qkea~-----------Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~ 222 (475)
+.-|++|+.-++...++... |.+++..|+.....+..+-.....++..++.+-..+...+..-++....
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~q 472 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQ 472 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555444 4444445555444444444455555556666666666666666666666
Q ss_pred HHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHH
Q 011909 223 LEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE---ESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 223 LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLE---esr~eL~kEIqqLReqLdel 279 (475)
|+.+... +.+.++-..++.+.-..++++++|-.+.. .....+.++|..+..+|+..
T Consensus 473 L~~e~e~-~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 473 LVKELEK-LPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHHh-CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6666655 44446555555555555555555544433 35566777777777766643
No 103
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.48 E-value=0.51 Score=49.21 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 130 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 209 (475)
Q Consensus 130 ~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~L 209 (475)
....+.-+.|..+...+-|+...++..|+=|+..+....---...... -+..+-+.+..+++++.....+|
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~---------~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR---------HFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc---------ccchHHHHHHHHHHHHHHHHHHH
Confidence 333444456666666666666666666666665543322111110000 01145566666677777777777
Q ss_pred HHHHHhHHHHHHHHHHhhhhh------hhhhh--chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 210 NMKRASLEERLKLLEADKDSW------TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 210 kqkLasLEeKl~~LkaERD~W------LkkEI--sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
..-+.++-....-|..|||.| |..|+ -|...-. .-.+|.+|-.+-.-|.+...++..|...++..|.+.
T Consensus 146 e~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~-rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDEN-RIVDIDALIMENRYLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776 33333 1111111 111344444444444444444444444444444443
No 104
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.48 E-value=2.1 Score=48.08 Aligned_cols=229 Identities=19% Similarity=0.177 Sum_probs=114.4
Q ss_pred HHhhHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909 107 KEATLEGTVQQLQNECDLYK---------------------------EKVATLEETIQQLQRQNDLRMQKEATLEETIKQ 159 (475)
Q Consensus 107 ~e~~l~e~IkqLq~El~~lk---------------------------~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKd 159 (475)
|.-..-..|+.+|.+++.++ ...+-+..+.++...+++.+......++..+.+
T Consensus 60 k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~ 139 (629)
T KOG0963|consen 60 KLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELAD 139 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 33445567888888888776 222333333344455566666666666666655
Q ss_pred HHhhhhHHHHHhhhhHHHHHhHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Q 011909 160 LRNQNDLHIQREGGLEMNIANLQSEKE----FWLQKE-AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 234 (475)
Q Consensus 160 Le~~~~s~~Qkea~Lee~I~qLq~EI~----~~~qEl-a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkE 234 (475)
++.....-.--+..+.+.-..+...|. ....++ .....+..-|.+++..+..++..++.++..|+..--. .+.+
T Consensus 140 ~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~-t~~e 218 (629)
T KOG0963|consen 140 LKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIED-TQNE 218 (629)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhH
Confidence 554433222222222222222222222 212222 2333444555666666666666666666666332222 2222
Q ss_pred h-ch----HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hh-hhhhhhhh-hhhhhch
Q 011909 235 S-VS----KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS-----DE-SKKLQHAT-SEQKDFS 302 (475)
Q Consensus 235 I-sL----ke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs-----LE-~Eeal~e~-eEn~~Ls 302 (475)
. .+ .+.+.....++.-+-.++.........+..|+..|+.++....+.... ++ ....+|.. .++..|+
T Consensus 219 l~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~ 298 (629)
T KOG0963|consen 219 LFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLS 298 (629)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHH
Confidence 2 22 233667777777777777777777777777777777777754333222 11 11223332 2555565
Q ss_pred HHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 303 TQIEAAGA-----------LIDKLITENIELVEKVNDLSVKLDRQ 336 (475)
Q Consensus 303 ~E~E~l~s-----------~vekL~~enq~LeEe~neL~~~l~~~ 336 (475)
..++++.+ .+..|-.++-.....+.+|..+|+-+
T Consensus 299 ~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 299 NDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555443 33334344444444555555555443
No 105
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.67 Score=54.25 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=28.6
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
..+..+...-..+..++.+..++-..+..+=.|-+.|+..++.+...+..
T Consensus 443 e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 443 ETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR 492 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666666666666555555666666555555444
No 106
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.39 E-value=0.89 Score=54.36 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=51.5
Q ss_pred HHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 011909 222 LLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKD 300 (475)
Q Consensus 222 ~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~ 300 (475)
.|++|+.. +..++ .++..+.+...-..=++.+...+......+..+++.|++.++..+..-.. .+ +++.++
T Consensus 177 ~lqae~~~-l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se----~~---~~~~~~ 248 (1109)
T PRK10929 177 ALQAESAA-LKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAE----RA---LESTEL 248 (1109)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHH
Confidence 33444444 44444 44445555554444555555556666666666666666666654333222 11 223333
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
+..+...+...+.++.+.|++|-++++....++
T Consensus 249 ~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~ 281 (1109)
T PRK10929 249 LAEQSGDLPKSIVAQFKINRELSQALNQQAQRM 281 (1109)
T ss_pred hHHhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222233345555666666666666555544
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=1.8 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=10.8
Q ss_pred HHHhhhcchhhhhHHHhhHHHHH
Q 011909 93 TVKHLRNERESHIQKEATLEGTV 115 (475)
Q Consensus 93 ti~~l~~e~~~~~~~e~~l~e~I 115 (475)
.=|+|+...++..|+|.--.+.|
T Consensus 373 lekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 373 LEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544433333
No 108
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.37 E-value=0.77 Score=51.60 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=25.4
Q ss_pred hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 297 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 337 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~ 337 (475)
++..-+.+.+.+---++.+..-|.+-+...-+|+.-||+-.
T Consensus 268 d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~ 308 (861)
T KOG1899|consen 268 DGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNYD 308 (861)
T ss_pred cccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhh
Confidence 45545555556777777777777666666666666555443
No 109
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.34 E-value=1.1 Score=43.45 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 262 RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 262 r~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
+..|...+..+...+......++.|+...-+. +.-++.++-.-......++.+...|.+++..|..+|
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~----~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELE----NKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666655544332 333444444444555566666666777777776655
No 110
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.31 E-value=0.54 Score=48.73 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQN---DLRMQKEATLEE 155 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~---~~~LQkkA~lE~ 155 (475)
+.|...+..++..+......+.||+.+. ++++|..+....
T Consensus 93 ~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~e 135 (306)
T PF04849_consen 93 QDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDE 135 (306)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhh
Confidence 3445555556666666666666666543 445555554443
No 111
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.31 E-value=0.33 Score=50.25 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
+++..+..|...++.+......|......+..=...+..+.+.+..++..|+....
T Consensus 141 llegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~ 196 (312)
T smart00787 141 LLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED 196 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555555555555555555555555555555555555566666655555555433
No 112
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.30 E-value=0.78 Score=42.41 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=28.9
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
....+.........+...|..|+..+..|...+..+..+...+
T Consensus 99 ~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 99 TTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3344555555566777777888888888887777777666544
No 113
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.30 E-value=1.6 Score=46.87 Aligned_cols=177 Identities=19% Similarity=0.209 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH-HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 011909 135 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI-QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES------- 206 (475)
Q Consensus 135 tikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~-Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee------- 206 (475)
...-++.+...+-++....|..+.+|+..+.... .....+..+|..++........++..+...+..+...-
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~ 241 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVL 241 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 4444555555555566666666666665544211 11123445555555555555555555555555555432
Q ss_pred --------HHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHH---------------------HHHHHHHH
Q 011909 207 --------AALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDI---------------------TQLRMQVV 256 (475)
Q Consensus 207 --------~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~Ei---------------------ksLqeEVk 256 (475)
..+..++..++.++..|..-.-. =+-.+ .++.+|..+...+ ..|...+.
T Consensus 242 ~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~-~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 320 (498)
T TIGR03007 242 LAGSSVANSELDGRIEALEKQLDALRLRYTD-KHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELA 320 (498)
T ss_pred CcccccCCCchHHHHHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHH
Confidence 24445555555555554110000 00111 2222222222222 23444455
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHH
Q 011909 257 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLIT 317 (475)
Q Consensus 257 eLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~ 317 (475)
.++.....+..++..++.++..++.++..+-.... +-.+|.++.+.+....+.+.+
T Consensus 321 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~-----el~~L~Re~~~~~~~Y~~l~~ 376 (498)
T TIGR03007 321 EAEAEIASLEARVAELTARIERLESLLRTIPEVEA-----ELTQLNRDYEVNKSNYEQLLT 376 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544444322222 555666666666666655555
No 114
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.24 E-value=3.5 Score=48.08 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHH
Q 011909 112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 191 (475)
Q Consensus 112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qE 191 (475)
+..|.+++..+..+.-.+..-+-...+...+...+-...+.+...--+++..+.. +......+-.|..+
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~-----------~ee~e~~~l~~e~r 425 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVL-----------VEEAENKALAAENR 425 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHH
Confidence 3456666666666666555544444444444443333333333333333222211 34556666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011909 192 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENR 270 (475)
Q Consensus 192 la~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIq 270 (475)
...++.+|.+|..+-..+.+|.+....++..-+...+. +..++ .|...|..+..+...+...-.+......++..|..
T Consensus 426 y~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~-~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 426 YEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDD-VEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 78888888888888888888888776666544433332 23333 44444444444444433334444444445555555
Q ss_pred HHHHHHHHHHhhhhh
Q 011909 271 QLKENVSSLRSQLSS 285 (475)
Q Consensus 271 qLReqLdelqseiqs 285 (475)
.+..++..++..+..
T Consensus 505 ~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 505 LLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHhhh
Confidence 555555555444433
No 115
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.18 E-value=0.038 Score=52.80 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=21.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 229 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~ 229 (475)
+..|+.++..+..++.....-++.++++..+|.-.+..++.+++.|+.|.+.
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444444444444444444443
No 116
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.15 E-value=0.9 Score=42.25 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHH
Q 011909 196 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESR 262 (475)
Q Consensus 196 ~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr 262 (475)
...+..|..+-..+...+..++..+..|..+|+.|. ++. ..+..|+.+..-+.++..-+..++...
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~-k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek 117 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLD-KELQKKQEKVSELESLNSSLENLLQEKEQEK 117 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333444444444444444555555555556666633 333 555566666666666666666655553
No 117
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.15 E-value=1.3 Score=50.72 Aligned_cols=174 Identities=14% Similarity=0.229 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 127 EKVATLEETIQQLQRQN-DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE 205 (475)
Q Consensus 127 ~kl~~L~etikQLe~d~-~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~E 205 (475)
.-++.|....+.+..++ ..+-+....++-+++-|+...+... .+|..++.++......-..|..+|+...+.
T Consensus 536 E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql-------~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~ 608 (717)
T PF10168_consen 536 ECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQL-------KELQELQEERKSLRESAEKLAERYEEAKDK 608 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666653 4444555566666666655544322 334555555555444445555666666666
Q ss_pred HHHHHHHHHhHHHHHHH----H-HHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 206 SAALNMKRASLEERLKL----L-EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 206 e~~LkqkLasLEeKl~~----L-kaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
-..|.+++..+=..+.. | .+||+. ..++..+..++..+..+..++...++.++.++. .+
T Consensus 609 Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~---------------~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~ 672 (717)
T PF10168_consen 609 QEKLMKRVDRVLQLLNSQLPVLSEAEREF---------------KKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQ 672 (717)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence 66666655544222221 0 333332 222333333333333333333333333333333 11
Q ss_pred hhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 281 SQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 281 seiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
..... .... =-..|.+.+.+.|.++..+-.+|+.+++.+..++
T Consensus 673 ~~~~~--~s~~--------L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 673 KSPKK--KSIV--------LSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred ccccC--CCcc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11100 1111 1235667778888888888888888888887644
No 118
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.08 E-value=2.3 Score=44.49 Aligned_cols=105 Identities=15% Similarity=0.175 Sum_probs=59.9
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHhhhhhhhhhh-chHHHHhhhH
Q 011909 172 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-----EADKDSWTQMES-VSKETIAGLS 245 (475)
Q Consensus 172 a~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L-----kaERD~WLkkEI-sLke~ISsl~ 245 (475)
..|..-+...+..+..+..++..|..++..++...-.|+++++.....-..+ -.+|..|+. ++ .++..+..+.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~-qLEk~~~q~~qLe 146 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVE-QLEKLREQIEQLE 146 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHH-HHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555443333222 256666443 34 6677777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 246 VDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 246 ~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
.++.++..+..++..+++.......-|...|.
T Consensus 147 ~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 147 RDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666666666666655554
No 119
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.07 E-value=3.7 Score=46.84 Aligned_cols=192 Identities=19% Similarity=0.201 Sum_probs=116.9
Q ss_pred HHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909 87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 166 (475)
Q Consensus 87 ~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s 166 (475)
..-+--.|.-|+++--.+-|..+||...+++=-++++.-.-.-+.|+.+.......+..+-++-+..|..++-+.+.+.+
T Consensus 333 ~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S 412 (739)
T PF07111_consen 333 VKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSS 412 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667788888899999999999999888888887777777888888888888888888888999999999888887
Q ss_pred HHHHhhhhHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHh
Q 011909 167 HIQREGGLEMNIANLQS---EKEFWLQKEAALEQKISQLRDESAALNMKRA-----------------SLEERLKLLEAD 226 (475)
Q Consensus 167 ~~Qkea~Lee~I~qLq~---EI~~~~qEla~L~peiekL~~Ee~~LkqkLa-----------------sLEeKl~~LkaE 226 (475)
..+. |+.+...++. .+-.....++--.++ +....+.+..+++ .+...+.+|..|
T Consensus 413 ~q~~---L~s~ma~ve~a~aRL~sL~~RlSyAvrr---v~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReE 486 (739)
T PF07111_consen 413 SQQW---LESQMAKVEQALARLPSLSNRLSYAVRR---VHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREE 486 (739)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHhHHHHHHhcc---cchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHH
Confidence 7775 3333333332 222222233222222 2222233333433 678889999999
Q ss_pred hhhhhhhhhchHHHHh---------hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 227 KDSWTQMESVSKETIA---------GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 227 RD~WLkkEIsLke~IS---------sl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
||. +..|+-+...+- .-..+...|.+....|+.......+.+..+..+|..++...+.
T Consensus 487 RdR-l~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe 553 (739)
T PF07111_consen 487 RDR-LDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE 553 (739)
T ss_pred HHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999 444442222221 1223333444444444444444444444444444444444433
No 120
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=2.9 Score=49.58 Aligned_cols=111 Identities=13% Similarity=0.213 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHhhhhH------HHHHhhhhHHHH
Q 011909 112 EGTVQQLQNECDLYKEKVATLEETI-------QQLQRQNDLRMQKEATLEETIKQLRNQNDL------HIQREGGLEMNI 178 (475)
Q Consensus 112 ~e~IkqLq~El~~lk~kl~~L~eti-------kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s------~~Qkea~Lee~I 178 (475)
+..|..+.+++..+..+...+..++ .-...+...+++..+.+.-.|++.+..... -.++-.....+|
T Consensus 226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl 305 (1141)
T KOG0018|consen 226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRL 305 (1141)
T ss_pred hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHH
Confidence 4455555555555554444444333 333345566778888888888888877766 122333344556
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909 179 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 222 (475)
Q Consensus 179 ~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~ 222 (475)
...+..|.............|+.+.++-.++..+...++.++..
T Consensus 306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666655555543
No 121
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.98 E-value=2 Score=48.79 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909 130 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 166 (475)
Q Consensus 130 ~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s 166 (475)
........-|..+...+-++....|..+..|+..+..
T Consensus 190 ~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 190 ESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344445555555556666666666666666665443
No 122
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=3.7 Score=45.80 Aligned_cols=214 Identities=18% Similarity=0.217 Sum_probs=95.0
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH---HHHhhhhHHHH
Q 011909 102 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH---IQREGGLEMNI 178 (475)
Q Consensus 102 ~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~---~Qkea~Lee~I 178 (475)
.+-=+++..|++..+.|+.-+..+..-+.-+..-...........-......|..+..|+..++.. ..++..--+.+
T Consensus 255 ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv 334 (581)
T KOG0995|consen 255 EKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDV 334 (581)
T ss_pred hcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 444566777777777777666655544444333333333333333334444444444443333221 11112222333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHhhhhh------------------------
Q 011909 179 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMK----RASLEERLKLLEADKDSW------------------------ 230 (475)
Q Consensus 179 ~qLq~EI~~~~qEla~L~peiekL~~Ee~~Lkqk----LasLEeKl~~LkaERD~W------------------------ 230 (475)
.+...|.....+++..|.++++.|..+.-.++.+ ..+++.+...+..-+...
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d 414 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVD 414 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCcccccc
Confidence 3444444445555555555555554443333321 122333332221111110
Q ss_pred hhhhh--chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh---hhhhhhchHHH
Q 011909 231 TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA---TSEQKDFSTQI 305 (475)
Q Consensus 231 LkkEI--sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e---~eEn~~Ls~E~ 305 (475)
++.-+ .+++-+-....++..-..+...|++...++..-|..++..+.....++..++...-+.. -++-++...++
T Consensus 415 ~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~ 494 (581)
T KOG0995|consen 415 LKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEI 494 (581)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 22222333333344444455555555555555555555555555555555544443322 23555566666
Q ss_pred HHHHhHHHHH
Q 011909 306 EAAGALIDKL 315 (475)
Q Consensus 306 E~l~s~vekL 315 (475)
|.+-..+..+
T Consensus 495 e~le~~l~~l 504 (581)
T KOG0995|consen 495 EKLEEELLNL 504 (581)
T ss_pred HHHHHHHHHH
Confidence 6666555444
No 123
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.94 E-value=2.4 Score=43.61 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q 011909 317 TENIELVEKVNDLSVKLDRQSVAAGLSSAIG 347 (475)
Q Consensus 317 ~enq~LeEe~neL~~~l~~~~~~~~~ss~~~ 347 (475)
.+-..+...+..+...++....-++.++-+.
T Consensus 253 ~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V~ 283 (423)
T TIGR01843 253 ARLAELRERLNKARDRLQRLIIRSPVDGTVQ 283 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhcEEECCCCcEEE
Confidence 3333444445555555555555677777654
No 124
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.93 E-value=1.8 Score=44.13 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=76.6
Q ss_pred HHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchH
Q 011909 159 QLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK 238 (475)
Q Consensus 159 dLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLk 238 (475)
+|..=...+.+-++.++.+|.+++..+-.....--.|.-+.+.+++.-. .-|-.+-+++--|.
T Consensus 35 El~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e-----------------~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 35 ELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE-----------------DQRVQFYQQESQLE 97 (333)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 3333344566666777777777766666555444444444443333221 11333344444566
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHH
Q 011909 239 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITE 318 (475)
Q Consensus 239 e~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~e 318 (475)
..++.......+|++=|.+||....-|..--..-.-.++.+.+++-.- ++-|--|.++++... -|..+
T Consensus 98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqA--------IErnAfLESELdEke----~lles 165 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQA--------IERNAFLESELDEKE----VLLES 165 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHhhHHH----HHHHH
Confidence 666666666666666677766666665554444444444444433221 122222333333222 23445
Q ss_pred HHHHHHHHHHHHHhhhh
Q 011909 319 NIELVEKVNDLSVKLDR 335 (475)
Q Consensus 319 nq~LeEe~neL~~~l~~ 335 (475)
-++|.++-.+|+-.|.-
T Consensus 166 vqRLkdEardlrqelav 182 (333)
T KOG1853|consen 166 VQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888777643
No 125
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.89 E-value=1.5 Score=50.26 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=45.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHH
Q 011909 107 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 186 (475)
Q Consensus 107 ~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~ 186 (475)
+|+-+...|..|+.++...++.+.-...+...|......+.+....+|...+.| +.+|.
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~l---------------------r~e~k 86 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRL---------------------REEIK 86 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Confidence 455666666666666666666666655555555555555555544444444444 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 187 FWLQKEAALEQKISQLRDESAALN 210 (475)
Q Consensus 187 ~~~qEla~L~peiekL~~Ee~~Lk 210 (475)
..+..+.++-.+|..|.++|=.|-
T Consensus 87 e~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 87 EYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 444455555555555555554443
No 126
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.87 E-value=1 Score=51.49 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhcch-hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 83 QREAMAILEETVKHLRNER-ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQ 140 (475)
Q Consensus 83 ~~~~~~~~eeti~~l~~e~-~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe 140 (475)
+.|.+.+|-.+++.|.++- .-|-.--.-+++-++.|+.+.+..-.++..+.++++.++
T Consensus 534 ~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 534 PQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777776652 333333344444555555555544444444444444443
No 127
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.87 E-value=0.0022 Score=72.18 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHh
Q 011909 82 LQREAMAILEETVKH 96 (475)
Q Consensus 82 ~~~~~~~~~eeti~~ 96 (475)
.|+..|.+++|..-+
T Consensus 142 ~Q~~im~~Iqev~~~ 156 (713)
T PF05622_consen 142 TQHAIMEAIQEVTSN 156 (713)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 456666666665544
No 128
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.86 E-value=3.3 Score=44.53 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=28.2
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 291 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eea 291 (475)
...+.+.+.......+...+..+.....++..+|..--+.+-+..++++.++...+
T Consensus 214 ~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~ 269 (499)
T COG4372 214 ARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQA 269 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555554444444444443
No 129
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.84 E-value=6.2 Score=47.52 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHH
Q 011909 113 GTVQQLQNECDLYKEKV----ATLEETI------QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 182 (475)
Q Consensus 113 e~IkqLq~El~~lk~kl----~~L~eti------kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq 182 (475)
+.|.+|-.+|...-.+| ++|..|+ ++|+.+-..+-+.-..++....+.........+........|...-
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~ 1590 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD 1590 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34566666665444333 3444433 4455544444444445555555666666666666666677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909 183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 226 (475)
Q Consensus 183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE 226 (475)
..|....+-+..+..+......-...-.+++..|+.++..||..
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHK 1634 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888777788888888888888877443
No 130
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.83 E-value=2.8 Score=43.53 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=65.7
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLR 252 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLq 252 (475)
|...+..++.+.......+..+.+-+-.+.+..+.|+.++..+... +.+-+..=..|. .++..|+....++...+
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~----~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQL----EDELEDCDPTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544444444444444444444444444333222 222111123455 67778888888888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 253 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 288 (475)
Q Consensus 253 eEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~ 288 (475)
.++.+++.....+...|.....+..++..++...+.
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877777777777444
No 131
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=5.9 Score=47.17 Aligned_cols=241 Identities=15% Similarity=0.174 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 73 LAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEAT 152 (475)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~ 152 (475)
.+|-+=+.|-++-- -|.|-|+.|+. ..+ ...-.+-.|.-|+..|..+..++..+.-...+++.+...+--....
T Consensus 649 wdek~~~~L~~~k~--rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~ 722 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKE--RLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDE 722 (1141)
T ss_pred cCHHHHHHHHHHHH--HHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556566655544 57777777776 333 2223333444444444444444433333333333333333333333
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHhh
Q 011909 153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF-WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EADK 227 (475)
Q Consensus 153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~-~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L----kaER 227 (475)
+.-+|-+++..++........|+++++.++..|=. +-+...----+|+...- .....++..+++..+..| .=++
T Consensus 723 ~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe~ 801 (1141)
T KOG0018|consen 723 FGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFENQKAKLENQLDFEK 801 (1141)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 33333333334333333344444445554444321 22222111223444433 444455555555555544 2222
Q ss_pred hhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHH
Q 011909 228 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ-LKENVSSLRSQLSSDESKKLQHATSEQKDFSTQI 305 (475)
Q Consensus 228 D~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqq-LReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~ 305 (475)
+.=++..+ ..++.++....++.+++.+.........++ .+... -+......+.++.. -..++...+.+--+|..++
T Consensus 802 ~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e-~~k~~~~~~~~~tkl~~~i 879 (1141)
T KOG0018|consen 802 QKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINE-VKKILRRLVKELTKLDKEI 879 (1141)
T ss_pred cccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhh
Confidence 22233333 444444444444444444444433333333 22111 01112222222222 1112222245666677777
Q ss_pred HHHHhHHHHHHHHHHHH
Q 011909 306 EAAGALIDKLITENIEL 322 (475)
Q Consensus 306 E~l~s~vekL~~enq~L 322 (475)
-++.+.++++..+...|
T Consensus 880 ~~~es~ie~~~~er~~l 896 (1141)
T KOG0018|consen 880 TSIESKIERKESERHNL 896 (1141)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 77777777766655444
No 132
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=2.6 Score=43.04 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 136 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 204 (475)
Q Consensus 136 ikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~ 204 (475)
+.+-+..+..+-+.+..++-.|..|...++....+...+.+++.+++.+|.....++..++..|....+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666666666666666666666666666666666666666666665554443
No 133
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.80 E-value=1.4 Score=39.81 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=13.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 250 QLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 250 sLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
.|..++.+++..+..|...+.-|-.+|+
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444555555555544443
No 134
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.76 E-value=1.1 Score=46.51 Aligned_cols=33 Identities=12% Similarity=0.333 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQ 142 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d 142 (475)
.|++.|+.|++++..+..+...|..+..+++..
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek 196 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEK 196 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH
Confidence 456666666666666665555555444444443
No 135
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.75 E-value=3 Score=43.21 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=32.3
Q ss_pred HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL 132 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L 132 (475)
.+.--..+++.|..--+-.-.-|+..|+.||..+..++-+-..+
T Consensus 54 ~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~ 97 (309)
T PF09728_consen 54 QLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR 97 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777777778888889999999999998777544443
No 136
>PRK11281 hypothetical protein; Provisional
Probab=95.72 E-value=2.6 Score=50.57 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 84 REAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLE 133 (475)
Q Consensus 84 ~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~ 133 (475)
+.+.+.++.|+..|.. .+.+-++=..|++.+.+...++....++++.+.
T Consensus 59 k~~~~~l~~tL~~L~q-i~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 59 KLVQQDLEQTLALLDK-IDRQKEETEQLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4455566666666542 334444444555555555555555555554433
No 137
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.71 E-value=1.3 Score=44.21 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHH
Q 011909 115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA 194 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~ 194 (475)
.+..+.++.........|.+..+.++.+...+-++...++..+..|+.........+..|+.++..++.+|.........
T Consensus 21 ~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ 100 (246)
T PF00769_consen 21 MRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESER 100 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666667777777777777777777777777777766666666777776666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 195 LEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 195 L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
-..+-..|+.+...-...+.....++
T Consensus 101 ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 101 KEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444444444443333
No 138
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.70 E-value=2.1 Score=44.00 Aligned_cols=167 Identities=20% Similarity=0.194 Sum_probs=97.2
Q ss_pred HHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 145 LRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 224 (475)
Q Consensus 145 ~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lk 224 (475)
.+||++..||-.+..|+-.. .|+.. +|..|+.-...-.++...-+.+|..|+-++..|......++.....
T Consensus 15 ~aLqKIqelE~QldkLkKE~---qQrQf----QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqK-- 85 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKER---QQRQF----QLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQK-- 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHH----hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH--
Confidence 45677777777666666542 22322 3444444444444555555555556666665555554444443332
Q ss_pred Hhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh---------
Q 011909 225 ADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA--------- 294 (475)
Q Consensus 225 aERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e--------- 294 (475)
|.-++ .-+-.+..+...+.+.++++.. |..++..++..|+..+.....-......|.
T Consensus 86 ------lshdlq~Ke~qv~~lEgQl~s~Kkqie~-------Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p 152 (307)
T PF10481_consen 86 ------LSHDLQVKESQVNFLEGQLNSCKKQIEK-------LEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATP 152 (307)
T ss_pred ------hhHHHhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCC
Confidence 33344 4444566666666666665555 445555555555555544444333333443
Q ss_pred -hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 295 -TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 295 -~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
+--.....+..|-|.....+...+..+|+.+|.-|.++.
T Consensus 153 ~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~k~ 192 (307)
T PF10481_consen 153 LTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQAKK 192 (307)
T ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 224455667788888999999999999999999998765
No 139
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.66 E-value=3.6 Score=47.67 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhH
Q 011909 181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELE 259 (475)
Q Consensus 181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLE 259 (475)
..+.......+++.+..++..+..++..|...|...+.-|..|...|.. .-.++ .|...|.+...++.+|+.++..+.
T Consensus 83 ~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~-~e~~~~~l~~~l~~~eken~~Lkye~~~~~ 161 (769)
T PF05911_consen 83 WEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQ-AEAEIEDLMARLESTEKENSSLKYELHVLS 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556667777778888888888888888777777777666665 55777 899999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011909 260 ESRNNLLQENRQLKENVS 277 (475)
Q Consensus 260 esr~eL~kEIqqLReqLd 277 (475)
....-...|-.--+...+
T Consensus 162 keleir~~E~~~~~~~ae 179 (769)
T PF05911_consen 162 KELEIRNEEREYSRRAAE 179 (769)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 887776666655555544
No 140
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.65 E-value=0.17 Score=52.24 Aligned_cols=93 Identities=26% Similarity=0.409 Sum_probs=55.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 253 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqe 253 (475)
....+..++.++....+++..+..++..|..+...+.+.+..++.+...|+.+... .-.....+..
T Consensus 41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~--------------~~~~~n~~~~ 106 (314)
T PF04111_consen 41 SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE--------------YWREYNELQL 106 (314)
T ss_dssp -HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 34556667777777777777777777777777777777777777666666443333 2223334444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 254 QVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 254 EVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
+......++.++...+.....+|+.++
T Consensus 107 ~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 107 ELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555553
No 141
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.48 E-value=0.11 Score=49.82 Aligned_cols=47 Identities=28% Similarity=0.269 Sum_probs=30.0
Q ss_pred hhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 231 TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 231 LkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
+..+| .....+..++.++..|+-+...++.....+..|+..|.++.=
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 555566666666667777777777777777777777755443
No 142
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.42 E-value=3.9 Score=42.35 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=79.9
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhH
Q 011909 102 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL 181 (475)
Q Consensus 102 ~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qL 181 (475)
+..+++-+=+....+.++..+..+......+...+.++..++..+.-.+..+|.-=++|+..+..-...-.....+-..-
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~k 104 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEK 104 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777788888888888889999999999999999999999999888888887765554333333333344
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 182 QSEKEFWLQK-EAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 182 q~EI~~~~qE-la~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
+.++..+++. +..|...++.-.+.+..+.+.-..|.+++..|
T Consensus 105 R~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l 147 (309)
T PF09728_consen 105 RKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSL 147 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 4444444433 25555555555544444444444455555544
No 143
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.40 E-value=0.044 Score=61.95 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 011909 245 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVE 324 (475)
Q Consensus 245 ~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeE 324 (475)
...+..|+.++..|+.....|..++..|..+|..+..+..--....=+.++..|=-...+.- ..+.++.|.+||+.|..
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~-k~~~l~~L~~En~~L~~ 580 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQI-KKSTLEALQAENEDLLA 580 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666543211100000000001222222222222 24678889999988888
Q ss_pred HHHHH
Q 011909 325 KVNDL 329 (475)
Q Consensus 325 e~neL 329 (475)
.+..|
T Consensus 581 ~l~~l 585 (722)
T PF05557_consen 581 RLRSL 585 (722)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87777
No 144
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.37 E-value=3.1 Score=42.81 Aligned_cols=26 Identities=42% Similarity=0.680 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 311 LIDKLITENIELVEKVNDLSVKLDRQ 336 (475)
Q Consensus 311 ~vekL~~enq~LeEe~neL~~~l~~~ 336 (475)
++++|.+.||+|..+++||...|+-+
T Consensus 279 l~dQLK~qNQEL~ski~ELE~rLq~q 304 (307)
T PF10481_consen 279 LLDQLKAQNQELRSKINELELRLQGQ 304 (307)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 78999999999999999998777544
No 145
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.34 E-value=3.9 Score=42.10 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=4.2
Q ss_pred CCceeecc
Q 011909 410 SGEIVQIP 417 (475)
Q Consensus 410 ~~eiv~~~ 417 (475)
.|.|+.|.
T Consensus 346 ~g~V~~i~ 353 (423)
T TIGR01843 346 NGKVKSIS 353 (423)
T ss_pred cEEEEEEC
Confidence 45555554
No 146
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.32 E-value=3.3 Score=40.86 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=22.3
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 240 ~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.+..+...+...+..+..|+.+..+..+++..|..--+++
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666666666665554444444
No 147
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.30 E-value=3.6 Score=44.12 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q 011909 310 ALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIG 347 (475)
Q Consensus 310 s~vekL~~enq~LeEe~neL~~~l~~~~~~~~~ss~~~ 347 (475)
..+....++-..++..+..+...|+....-+++++-+.
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~ 328 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGVLH 328 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeEEE
Confidence 33444444444555556666566666666788887664
No 148
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.30 E-value=3 Score=40.26 Aligned_cols=118 Identities=16% Similarity=0.221 Sum_probs=82.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 108 EATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 108 e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
+.+|...|++++..+...+..++..-...++++.++..+.......+.+...-=.......- ...=.++..
T Consensus 25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLA---------r~al~~k~~ 95 (221)
T PF04012_consen 25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLA---------REALQRKAD 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH---------HHHHHHHHH
Confidence 48999999999999999999999999999999998888888888777777554333221111 123334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Q 011909 188 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 234 (475)
Q Consensus 188 ~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkE 234 (475)
.......+...|..+......|+..+..++.++..++..++.+.-..
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666677777777777777777666654444
No 149
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.14 E-value=3.7 Score=40.47 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHH
Q 011909 113 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 192 (475)
Q Consensus 113 e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEl 192 (475)
..|..++.++...+.+...|......+...+.....-+..+|.+|.++=.. ..+.......+|..+..+.+.....+
T Consensus 9 ~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e---~~~~~~~~~~~i~~~~~erdq~~~dL 85 (207)
T PF05010_consen 9 AAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE---KQKQKELSEAEIQKLLKERDQAYADL 85 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHhhHHHHHHHH
Confidence 344445555555555555555555555555566666666666666664433 22223333444555555555544444
Q ss_pred HHHHHHHHHHHHHHH
Q 011909 193 AALEQKISQLRDESA 207 (475)
Q Consensus 193 a~L~peiekL~~Ee~ 207 (475)
..++.-+..|.....
T Consensus 86 ~s~E~sfsdl~~rye 100 (207)
T PF05010_consen 86 NSLEKSFSDLHKRYE 100 (207)
T ss_pred HHHHhhHHHHHHHHH
Confidence 444444443333333
No 150
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.11 E-value=7.4 Score=43.77 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQR 141 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~ 141 (475)
.++..+.+++.++..+.++++.+...+.+++.
T Consensus 213 ~le~el~~l~~~~e~l~~~i~~l~~ele~a~~ 244 (650)
T TIGR03185 213 ALEAELKEQSEKYEDLAQEIAHLRNELEEAQR 244 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333333
No 151
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.99 E-value=2.7 Score=38.04 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 115 VQQLQNECDLYKEKVATLEETIQQLQR 141 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~etikQLe~ 141 (475)
+..|+.++..+..........+..+..
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~ 31 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLRE 31 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333
No 152
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.99 E-value=1.2 Score=49.18 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchh------hhhHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 79 QHLLQREAMAILEETVKHLRNERE------SHIQKEATLE-----GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRM 147 (475)
Q Consensus 79 ~~~~~~~~~~~~eeti~~l~~e~~------~~~~~e~~l~-----e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~L 147 (475)
-..+|++-..+|.|.+|-|++||. +|+..|+++= -..-.+-.+++..-.++..+++.+.+.-+++....
T Consensus 153 ~S~~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~ 232 (596)
T KOG4360|consen 153 RSAFQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQ 232 (596)
T ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888899999999999995 4444444331 12334556677777777788888888888888888
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 148 QkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
...+.+.-.|-+++.+...+......+ -..|+.-++. -..+..++..+.+.++...+.+.+.++.|+-|
T Consensus 233 Ee~skLlsql~d~qkk~k~~~~Ekeel---~~~Lq~~~da----~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 233 EENSKLLSQLVDLQKKIKYLRHEKEEL---DEHLQAYKDA----QRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888887776665543322 2234444443 35678889999999999999999999999988
No 153
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=9.1 Score=43.94 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ 267 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~k 267 (475)
..++..|..++..+......+......++++.+.|+.-... +.+|+ .++-.+..++.....+...+..|....+....
T Consensus 502 ~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~-l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~ 580 (698)
T KOG0978|consen 502 REEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESK-LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEA 580 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444545555555555544433333 22333 34444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHhh
Q 011909 268 ENRQLKENVSSLRSQ 282 (475)
Q Consensus 268 EIqqLReqLdelqse 282 (475)
...+++.++......
T Consensus 581 ~le~i~~~~~e~~~e 595 (698)
T KOG0978|consen 581 KLEQIQEQYAELELE 595 (698)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 154
>PLN02939 transferase, transferring glycosyl groups
Probab=94.70 E-value=13 Score=44.39 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhh-hhhh-hhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 011909 265 LLQENRQLKENVSSLRSQLSSDESKKLQHA-TSEQ-KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGL 342 (475)
Q Consensus 265 L~kEIqqLReqLdelqseiqsLE~Eeal~e-~eEn-~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~~~~~ 342 (475)
...+++.|+.+++++...+..---....++ ++-- +++...-|++......+.+.-+--.+.+.++...|+....+.+-
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 322 VLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 344555566666655443332111111111 1111 33333344444445555555544555555555555555444443
No 155
>PF15294 Leu_zip: Leucine zipper
Probab=94.64 E-value=1.4 Score=45.31 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=47.5
Q ss_pred hhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 97 l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
|.-.++.-.. ++|.+.|..|++|+..++..+.. ++.....++..++.++..|++|+....
T Consensus 118 L~pl~e~g~~--~ll~kEi~rLq~EN~kLk~rl~~-------le~~at~~l~Ek~kl~~~L~~lq~~~~ 177 (278)
T PF15294_consen 118 LEPLNESGGS--ELLNKEIDRLQEENEKLKERLKS-------LEKQATSALDEKSKLEAQLKELQDEQG 177 (278)
T ss_pred cccccccchH--HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665332 67888888888888877776666 788999999999999999999999433
No 156
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=94.61 E-value=7.1 Score=41.13 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=31.6
Q ss_pred hhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 296 SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 296 eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
.+-+.|.-.|.+|..++--|+.+-..|...+.+|.+..
T Consensus 292 k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v 329 (391)
T KOG1850|consen 292 KEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQV 329 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccc
Confidence 36677888889999999999999999999999986643
No 157
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=9.9 Score=42.71 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=78.9
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHH
Q 011909 103 SHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 182 (475)
Q Consensus 103 ~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq 182 (475)
..-+|+ .|+..|..|+++.+...+++..+.++.-+.........+---.-| +.-..-+..++.....+|-.|+
T Consensus 41 lLeeK~-~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E------esLLqESaakE~~yl~kI~ele 113 (772)
T KOG0999|consen 41 LLEEKE-DLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE------ESLLQESAAKEEYYLQKILELE 113 (772)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH------HHHHHHHHHhHHHHHHHHHHHH
Confidence 333443 467888899999999999998888887766654433222211111 1222334456666777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909 183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 226 (475)
Q Consensus 183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE 226 (475)
.+.....+++.....+.+.+......++..-+.+|..+.+|++|
T Consensus 114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~e 157 (772)
T KOG0999|consen 114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDE 157 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 88888888888888888888888888877777777777777544
No 158
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.58 E-value=0.67 Score=47.92 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909 109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 163 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~ 163 (475)
......+.+++.++..++.+.+.|..+.+.|+.++....+....++...++|...
T Consensus 39 ~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 39 SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp ---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777788888888888888888888887777777777777766666544
No 159
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.57 E-value=13 Score=44.89 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
..+.+.|.......-..+..|++...+...+-+.+++++....--+....+..++-.+|+..+..|+..+..
T Consensus 1566 e~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1566 EDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444455555555665555555555555555555555555555544444444444444443
No 160
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.48 E-value=5.1 Score=38.96 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 011909 116 QQLQNECDLYKEKVAT 131 (475)
Q Consensus 116 kqLq~El~~lk~kl~~ 131 (475)
..|+.++..+..++.-
T Consensus 15 ~~L~n~l~elq~~l~~ 30 (194)
T PF15619_consen 15 KELQNELAELQRKLQE 30 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 161
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.47 E-value=7.5 Score=41.75 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=42.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--H----HHhhhhhhhhhh-chHHHHhhhHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL--L----EADKDSWTQMES-VSKETIAGLSV 246 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~--L----kaERD~WLkkEI-sLke~ISsl~~ 246 (475)
+..+|..++.++.........=-|++..+..+-+.+.+.+......... + ...--.||...+ .++..+..+..
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 331 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEA 331 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444333466666666666665554433211000 0 001113344444 55555555555
Q ss_pred HHHHHHHHHHHhHHHHH
Q 011909 247 DITQLRMQVVELEESRN 263 (475)
Q Consensus 247 EiksLqeEVkeLEesr~ 263 (475)
.+..|..++..++....
T Consensus 332 ~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 332 RVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555554443
No 162
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.35 E-value=15 Score=43.75 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 77 ERQHLLQREAMAILEET-------VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK 149 (475)
Q Consensus 77 ~~~~~~~~~~~~~~eet-------i~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQk 149 (475)
....+|+.+. .++++ |..|+.+-+..==....+++.++.+..++.....++..+...+.++..+...+.+.
T Consensus 616 k~~~f~~~~~--~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r 693 (1072)
T KOG0979|consen 616 KSRNFFSVSP--VLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQR 693 (1072)
T ss_pred hhhhhhccch--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4556677666 55544 44444444444334444555555555555555556666666666666666677777
Q ss_pred HHhHHHHHHHH
Q 011909 150 EATLEETIKQL 160 (475)
Q Consensus 150 kA~lE~kIKdL 160 (475)
++.+|..+.+|
T Consensus 694 ~~~ie~~~~~l 704 (1072)
T KOG0979|consen 694 KERIENLVVDL 704 (1072)
T ss_pred HHHHHHHHHHH
Confidence 77666654444
No 163
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.35 E-value=11 Score=42.06 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=15.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 304 QIEAAGALIDKLITENIELVEKVNDLS 330 (475)
Q Consensus 304 E~E~l~s~vekL~~enq~LeEe~neL~ 330 (475)
.+..+...+..+...|+.|..++.-|.
T Consensus 307 ~~~~l~~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 307 NLKELYEYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666555443
No 164
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.25 E-value=4.1 Score=40.54 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909 109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 188 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~ 188 (475)
.+|+..|++.+.++....+.++.+-...++++.+++.+......++.+...-=....-..-+ ..-+++..|+.....+
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr--~al~~~~~le~~~~~~ 104 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAR--EALEEKQSLEDLAKAL 104 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999888888888776655544433222 2345566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 225 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lka 225 (475)
.+.+........+|+.....|..++..+..+...|++
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a 141 (225)
T COG1842 105 EAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKA 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777766654
No 165
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.04 E-value=6.5 Score=38.42 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=82.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHH
Q 011909 107 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 186 (475)
Q Consensus 107 ~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~ 186 (475)
-+.+|...|+++++.|...++.++..-...+.++.++..+-...+..+.+...-=.......-+++- .+..
T Consensus 25 P~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al---------~~k~ 95 (219)
T TIGR02977 25 PEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAAL---------IEKQ 95 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH---------HHHH
Confidence 4578999999999999999999999888888888887777777777766665544333333222221 1555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 011909 187 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 230 (475)
Q Consensus 187 ~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W 230 (475)
........+..+|..+......++.++..|+.++..+++-++.+
T Consensus 96 ~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 96 KAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777777777777777777777766653
No 166
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.01 E-value=11 Score=43.85 Aligned_cols=200 Identities=20% Similarity=0.227 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 128 KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 207 (475)
Q Consensus 128 kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~ 207 (475)
++--+-....++=..+.+.+...+.++..|.+|....+--......+.. +..-.++|............++.... .
T Consensus 510 kIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD-v~s~~sEIK~~f~~~ss~e~E~~~~d---e 585 (769)
T PF05911_consen 510 KISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD-VSSMRSEIKKNFDGDSSSEAEINSED---E 585 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHHhhhhcccccccccchH---H
Confidence 3333444455666788889999999999999999998887777766665 22223333332222222211111111 2
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhh------hhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 208 ALNMKRASLEERLKLLEADKDSW------TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 208 ~LkqkLasLEeKl~~LkaERD~W------LkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
.-......++.++..|+.++... ....+ .++..+......+..|+.++..+.++......++...++....+.
T Consensus 586 a~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le 665 (769)
T PF05911_consen 586 ADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLE 665 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233334455555555544441 11223 344444445555555555555555555555555555555554444
Q ss_pred hhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 281 SQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVA 339 (475)
Q Consensus 281 seiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~~ 339 (475)
.+...++ .|...|...+..|-..|++..+....+.-+-.+|..+|......
T Consensus 666 ~~~~~~e--------~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 666 TRLKDLE--------AEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred hhhhHHH--------HHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence 4444322 25566777788888888777777777777777777766554433
No 167
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.01 E-value=6.8 Score=38.57 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhh
Q 011909 84 REAMAILEETVKHLR 98 (475)
Q Consensus 84 ~~~~~~~eeti~~l~ 98 (475)
....+.++.|+..|.
T Consensus 17 ~~~i~~l~~al~~L~ 31 (240)
T PF12795_consen 17 KALIQDLQQALSFLD 31 (240)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334556666666664
No 168
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.93 E-value=8.3 Score=39.32 Aligned_cols=145 Identities=23% Similarity=0.263 Sum_probs=84.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHhhhhhhhhhhchHHHHhhhHHHHHHHHH
Q 011909 176 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKDSWTQMESVSKETIAGLSVDITQLRM 253 (475)
Q Consensus 176 e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L--kaERD~WLkkEIsLke~ISsl~~EiksLqe 253 (475)
.++...+.+...|..++ ..++..|..+..++..++....+.++-| +-+++--++. ..|+.+.-++..|+.
T Consensus 63 ~~l~~ak~eLqe~eek~---e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~-----vqIa~L~rqlq~lk~ 134 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKE---ESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKA-----VQIANLVRQLQQLKD 134 (258)
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHHHHHHH
Confidence 34555666666666554 4677788888888888888888888887 3333333332 144444444443332
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-----------H-HHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHH
Q 011909 254 QVVELEESRNNLLQENRQLKENVS-----------S-LRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIE 321 (475)
Q Consensus 254 EVkeLEesr~eL~kEIqqLReqLd-----------e-lqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~ 321 (475)
.- ..+..+|.+-+...+..+. . +-...+.--...++..+-+|..+-.+++..-.+++.+..+...
T Consensus 135 ~q---qdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~ 211 (258)
T PF15397_consen 135 SQ---QDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQ 211 (258)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1122222222222222222 1 1111111111122222569999999999999999988888888
Q ss_pred HHHHHHHHHH
Q 011909 322 LVEKVNDLSV 331 (475)
Q Consensus 322 LeEe~neL~~ 331 (475)
|..+|..|+.
T Consensus 212 L~~eV~~L~~ 221 (258)
T PF15397_consen 212 LRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHH
Confidence 8888888877
No 169
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.89 E-value=2.4 Score=39.80 Aligned_cols=45 Identities=27% Similarity=0.373 Sum_probs=17.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 222 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~ 222 (475)
+..+..+++........+...+..+++....+...+...++++..
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDS 134 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333334444444444433333333333333333
No 170
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.80 E-value=9.8 Score=43.45 Aligned_cols=217 Identities=19% Similarity=0.208 Sum_probs=128.6
Q ss_pred HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 169 (475)
Q Consensus 90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q 169 (475)
|...-..+-+-.+-+.+.-..|+..|..+ +.++++ ++..-+..+++..|..|.++.+|-...+...-
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~------y~~kve-------~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~ 89 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEI------YKRKVE-------EASESKARLLQEIAVIEAELNDLCSALGEPSI 89 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHH------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 44444555555555666655666655543 223332 34444555566666667777766665443221
Q ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhh----hhhhhhhhchHHHHh
Q 011909 170 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADK----DSWTQMESVSKETIA 242 (475)
Q Consensus 170 kea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L---kaER----D~WLkkEIsLke~IS 242 (475)
-.. ...+.+. ..++.+..|.|.++.|..+.+.=+..+..+-.++..| -++. ..++-.+-+|-.
T Consensus 90 ~~~------~~~k~e~-tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl--- 159 (660)
T KOG4302|consen 90 IGE------ISDKIEG-TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSL--- 159 (660)
T ss_pred ccc------cccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccH---
Confidence 111 0011111 4566677777777777777777777777777777766 2222 222222221110
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh-------h--hhhhhchH-HHHHHHhHH
Q 011909 243 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA-------T--SEQKDFST-QIEAAGALI 312 (475)
Q Consensus 243 sl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e-------~--eEn~~Ls~-E~E~l~s~v 312 (475)
..+..++..+.+|+..+....+++..++..|..++..+.- .=...+.. . +.++-++. -+++|+..|
T Consensus 160 ---~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~-~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v 235 (660)
T KOG4302|consen 160 ---EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGL-DFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMV 235 (660)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccchhhhhhhhhhccCcccccCCHHHHHHHHHHH
Confidence 4566788888888888888888888888888877665433 11101111 1 13455544 468999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 011909 313 DKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 313 ekL~~enq~LeEe~neL~~~l 333 (475)
.+|..+..+...++.+|..++
T Consensus 236 ~~l~~~k~qr~~kl~~l~~~~ 256 (660)
T KOG4302|consen 236 KKLKEEKKQRLQKLQDLRTKL 256 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888765
No 171
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.66 E-value=16 Score=41.81 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=27.0
Q ss_pred Hhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011909 225 ADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN 275 (475)
Q Consensus 225 aERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReq 275 (475)
..+-.-++.++ .+++.+......+....+++.++..+..++..+.++..+.
T Consensus 178 ~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~ 229 (716)
T KOG4593|consen 178 EMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAEL 229 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333445555 5555666665666655566665555555555544444333
No 172
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=93.63 E-value=5.8 Score=42.31 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=52.8
Q ss_pred HHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 224 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 288 (475)
Q Consensus 224 kaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~ 288 (475)
-+||.--|+.|.-.++.|.....+..-|+.++..++.....+..|...|++-+..+...++-+.-
T Consensus 230 aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 230 AAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 56777778888888888888888888999999998888888999999998888877666555443
No 173
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.47 E-value=25 Score=43.30 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 263 NNLLQENRQLKENVSSLRSQLSSDES 288 (475)
Q Consensus 263 ~eL~kEIqqLReqLdelqseiqsLE~ 288 (475)
.++..+++.++..|+.+..++..+..
T Consensus 924 eel~a~L~e~r~rL~~l~~el~~~~~ 949 (1353)
T TIGR02680 924 DEIRARLAETRAALASGGRELPRLAE 949 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555443
No 174
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.46 E-value=21 Score=42.50 Aligned_cols=39 Identities=8% Similarity=0.200 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 247 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 247 EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
.+..+..+...+..........|...+..|..++.++++
T Consensus 319 ~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 319 EVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333444444455555555666666666666666666555
No 175
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.44 E-value=4.5 Score=36.24 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 119 QNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 119 q~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
++...++...++.|+..+...+..+..+.+.+-.++..+..|+....+-.++-..|+.+|..+...++.
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555555555555555555555555555555555555554
No 176
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=93.39 E-value=4.8 Score=41.78 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 011909 117 QLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 196 (475)
Q Consensus 117 qLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~ 196 (475)
+|..++...+-+-...=.+-.||+.++..++-.+-.|..+|-+++. .+.+++.++..+..++..++
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE--------------~~~~~~re~~eK~~elEr~K 146 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEE--------------TLAQLQREYREKIRELERQK 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3466666677777777777788999988888888888777776654 47788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhh-----hh--------------chHHHHhhhHHH-HHHHHHHHH
Q 011909 197 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM-----ES--------------VSKETIAGLSVD-ITQLRMQVV 256 (475)
Q Consensus 197 peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkk-----EI--------------sLke~ISsl~~E-iksLqeEVk 256 (475)
-.+..|+.+...|+..+.....-|.- +---|-. +. ...+....+... -..|.-.+.
T Consensus 147 ~~~d~L~~e~~~Lre~L~~rdeli~k----hGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLk 222 (302)
T PF09738_consen 147 RAHDSLREELDELREQLKQRDELIEK----HGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLK 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----CCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHH
Confidence 88888888888887777555443331 1110111 11 122222222222 235556678
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 257 ELEESRNNLLQENRQLKENVSSLRSQLS 284 (475)
Q Consensus 257 eLEesr~eL~kEIqqLReqLdelqseiq 284 (475)
.|-..+..|..+|..|+.+|+..+....
T Consensus 223 Kl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 223 KLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888899999999999999986654433
No 177
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.28 E-value=7.3 Score=36.60 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLE-ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 188 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~-etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~ 188 (475)
.++-.+..++..+...+.==..|. .+-.||+-++..+..++..-...+..|+.......+.-...-+++.-+..++...
T Consensus 17 ~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l 96 (177)
T PF13870_consen 17 TLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554443222232 4557888888888888888888888888888888888666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
..++....+.+.++.++-...+.....+......|
T Consensus 97 ~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 97 KQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555555555555444444444433
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.22 E-value=2.8 Score=45.67 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=17.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 250 QLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 250 sLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.|++..+.+...+.+....|++|+++|..+
T Consensus 418 kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 418 KLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444455555555666666666666655
No 179
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.19 E-value=9.4 Score=37.63 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=32.9
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
.|.+.+..+...+.+|......+.........+|..+-++|.+...+-..
T Consensus 113 eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~ 162 (205)
T KOG1003|consen 113 ELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEF 162 (205)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 55556666666777777777777777777777777777776655444333
No 180
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.19 E-value=2.6 Score=42.03 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 214 ASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 282 (475)
Q Consensus 214 asLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse 282 (475)
.++....+.|..||.. .-.|+ -+...|..+...|+.++.+..........+..+..-|++.+++++.+
T Consensus 35 ~e~~kE~~~L~~Er~~-h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 35 EEYRKEMEELLQERMA-HVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555554 22333 33444444444444444444444444444555555555555555444
No 181
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.18 E-value=22 Score=41.72 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 242 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 242 Ssl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
.........+...+..+......+...+...++.+..+...+..
T Consensus 399 ~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 399 AELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444333333
No 182
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.13 E-value=8.8 Score=43.64 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=6.2
Q ss_pred HHHHHHhhccccccc
Q 011909 455 LVSFVAKYVSGADLV 469 (475)
Q Consensus 455 lisfva~yvsgadlv 469 (475)
+-.|+...-...|+|
T Consensus 645 ~~~~l~~l~~~yD~I 659 (754)
T TIGR01005 645 MFSLVIHARLYSDCV 659 (754)
T ss_pred HHHHHHHHHhhCCEE
Confidence 334444433344443
No 183
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.05 E-value=0.83 Score=37.92 Aligned_cols=53 Identities=17% Similarity=0.382 Sum_probs=29.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 230 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W 230 (475)
+.+|+..|.......+.|.-++..|+.++..+...-..|...-.+|+.+|..|
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555566665555555555555555555555555
No 184
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.85 E-value=4.9 Score=36.74 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=29.7
Q ss_pred HHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 167 HIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 167 ~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
.......+..++..+..++.........++.++..+..+.+.+..++..++.+++.+
T Consensus 50 ~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 50 DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556666666555555555555555555555555555554444444433
No 185
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.82 E-value=18 Score=39.82 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=9.0
Q ss_pred CchhHHHHHHhh
Q 011909 451 APFRLVSFVAKY 462 (475)
Q Consensus 451 apfrlisfva~y 462 (475)
-+|||-.|.-||
T Consensus 483 ~~ir~g~fLrr~ 494 (511)
T PF09787_consen 483 FSIRLGIFLRRY 494 (511)
T ss_pred hhHHHHHHHhcC
Confidence 367888888777
No 186
>PLN03188 kinesin-12 family protein; Provisional
Probab=92.66 E-value=29 Score=42.41 Aligned_cols=144 Identities=14% Similarity=0.214 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 138 QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN-------LQSEKEFWLQKEAALEQKISQLRDESAALN 210 (475)
Q Consensus 138 QLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q-------Lq~EI~~~~qEla~L~peiekL~~Ee~~Lk 210 (475)
.|+.++-.|+..+..-=.--.+|+...+++..--..+..+|.. |..-....-+==|+|..+|..|++....|.
T Consensus 1048 ~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll 1127 (1320)
T PLN03188 1048 KLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLL 1127 (1320)
T ss_pred HHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555444555555555554443333333322 333333333444888889999988888888
Q ss_pred HHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 211 MKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 211 qkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
.+=....+.|..+|..=..-=.+- -=.++|.++..++..|+-+ -|.++.-|..|+..|+.||-..-.-++.
T Consensus 1128 ~~hr~i~egi~dvkkaaakag~kg-~~~~f~~alaae~s~l~~e---reker~~~~~enk~l~~qlrdtaeav~a 1198 (1320)
T PLN03188 1128 ARHRRIQEGIDDVKKAAARAGVRG-AESKFINALAAEISALKVE---REKERRYLRDENKSLQAQLRDTAEAVQA 1198 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 877777777777743222210011 1256888888888888765 4668888999999999988766444444
No 187
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.56 E-value=19 Score=39.61 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=58.7
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhhhhhhhhh----hhhhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS------------SDESKKLQHA----TSEQK 299 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiq------------sLE~Eeal~e----~eEn~ 299 (475)
++++.+..+.......++.+.+.......|.-++..++.---.++.+.. -++.+-+++. ++--+
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444444444455555555555555555555554444444333333321 1233333333 34556
Q ss_pred hchHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909 300 DFSTQIEAAG-ALIDKLITENIELVEKVNDLSVKLDRQSV 338 (475)
Q Consensus 300 ~Ls~E~E~l~-s~vekL~~enq~LeEe~neL~~~l~~~~~ 338 (475)
.|..++|.++ +.|+.|..++.-.+.+|-.|...++....
T Consensus 467 ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ek 506 (527)
T PF15066_consen 467 QLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEK 506 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888877 78888888888888888888877765543
No 188
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.52 E-value=2 Score=35.66 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 136 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS 200 (475)
Q Consensus 136 ikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peie 200 (475)
..+|+.....++..++.++.++.+|+..+....+....|..+..+|+.+-..|...+..+..+++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35677777777888888888888888888777777777777788888888888777777766664
No 189
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.44 E-value=21 Score=39.74 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=67.9
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 208 ALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE-----LEESRNNLLQENRQLKENVSSLRSQ 282 (475)
Q Consensus 208 ~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVke-----LEesr~eL~kEIqqLReqLdelqse 282 (475)
.+-.++..+....+.+..+. +--....+...|..+...+..+...+.. .+.....+..+|..|-+.+..=-.-
T Consensus 223 ~~P~ql~eL~~gy~~m~~~g--y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~A 300 (560)
T PF06160_consen 223 EFPDQLEELKEGYREMEEEG--YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEA 300 (560)
T ss_pred HhHHHHHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666664433 2223345556666666666655555544 4445555555555555555421111
Q ss_pred hhhhhhhhhh-hh-----hhhhhhchHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 283 LSSDESKKLQ-HA-----TSEQKDFSTQIEAAGA---LIDKLITENIELVEKVNDLSVKLDRQS 337 (475)
Q Consensus 283 iqsLE~Eeal-~e-----~eEn~~Ls~E~E~l~s---~vekL~~enq~LeEe~neL~~~l~~~~ 337 (475)
...++..... .. ...|+.|..+++++.. +-+.....-+.|.+.++.|...++...
T Consensus 301 k~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~ 364 (560)
T PF06160_consen 301 KKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLE 364 (560)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 11 3588999999999887 233445555667777777766554443
No 190
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.35 E-value=17 Score=38.55 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 132 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM 211 (475)
Q Consensus 132 L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~Lkq 211 (475)
-+.+-+||+..+..++-.......-+...+. .-..+|.-+.+++.|+....-.+..+.-++..-.++...|.+
T Consensus 97 ~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~-------~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 97 RQQESEQLQSQNQKLKNQLFHVREVFMKTKG-------DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 3344455555555544444443333322222 223477778888888888888888888888888888888888
Q ss_pred HHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHH
Q 011909 212 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN 264 (475)
Q Consensus 212 kLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~e 264 (475)
.+++.-+-+..|-+|...=+... -.-|.....-|..|...|.+|--+..+
T Consensus 170 ELaE~layqq~L~~eyQatf~eq---~~ml~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 170 ELAEALAYQQELNDEYQATFVEQ---HSMLDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHHHHHHHHHHHHHhhcccccc---hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777766655522221 223444445555555555554444333
No 191
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.30 E-value=8.5 Score=44.29 Aligned_cols=42 Identities=19% Similarity=0.387 Sum_probs=24.4
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 239 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 239 e~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
+.+.++..+..++++++..+...+..+...+..|+..++.++
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555555555666666666666666666666666666555
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.23 E-value=5.6 Score=43.41 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhHHH-HHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 136 IQQLQRQNDLRMQKEATLEE-TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 206 (475)
Q Consensus 136 ikQLe~d~~~~LQkkA~lE~-kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee 206 (475)
-.||+.++..+.+....++- .+...+.......+....++.....++++......++..+..++.++.++.
T Consensus 327 ~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel 398 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKEL 398 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777666665555 333333333333333333333333344444443333333333333333333
No 193
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.10 E-value=1.2 Score=37.77 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=36.2
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
-|+..|..++..+..|..++..+...+..|..++++|+..-..|+.++.+
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666677777777777777777788888887777777766655
No 194
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.08 E-value=23 Score=39.30 Aligned_cols=105 Identities=14% Similarity=0.185 Sum_probs=47.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhhhhhhhhh-chHHHHhhhHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES-VSKETIAGLSVDIT 249 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L---kaERD~WLkkEI-sLke~ISsl~~Eik 249 (475)
++.-.+.++.-...|.-.+..|..+++.-..+-.+|+.+.++|-..++.- -.+= ..+.+|= .|.+.+...+-+..
T Consensus 314 ~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~f-e~mn~Ere~L~reL~~i~~~~~ 392 (622)
T COG5185 314 YENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQF-ELMNQEREKLTRELDKINIQSD 392 (622)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHhcchHH
Confidence 33333444444444444444444444444444444444444443333321 0000 0122222 45566666666677
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 250 QLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 250 sLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.|.+.|.+-+-.....-+++..+-.+++.+
T Consensus 393 ~L~k~V~~~~leaq~~~~slek~~~~~~sl 422 (622)
T COG5185 393 KLTKSVKSRKLEAQGIFKSLEKTLRQYDSL 422 (622)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665554444444444444444444
No 195
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.94 E-value=4.6 Score=36.14 Aligned_cols=92 Identities=24% Similarity=0.296 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 136 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 215 (475)
Q Consensus 136 ikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLas 215 (475)
+.-|+.-+..+--..+.++..|.+.+..++-....+..|...+..|+....+..+.++.|..+|..+...... .+++.
T Consensus 4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak 81 (107)
T PF09304_consen 4 KEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAK 81 (107)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3344444555555566666666666666666655555566666666666666666666666666655555554 33333
Q ss_pred HHHHHHHHHHhhhh
Q 011909 216 LEERLKLLEADKDS 229 (475)
Q Consensus 216 LEeKl~~LkaERD~ 229 (475)
++..-+.+++++|.
T Consensus 82 ~~l~~r~~k~~~dk 95 (107)
T PF09304_consen 82 LELESRLLKAQKDK 95 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 33333334444443
No 196
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.93 E-value=8 Score=41.90 Aligned_cols=101 Identities=22% Similarity=0.236 Sum_probs=73.5
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHH
Q 011909 172 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL 251 (475)
Q Consensus 172 a~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksL 251 (475)
..+.+++..+..++++..+.-+.+..+.-.+..+..+++.++..+|..|+.||.|-+. +..| .-+...+.+-+
T Consensus 9 s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~-l~e~------~v~~~a~~~~~ 81 (459)
T KOG0288|consen 9 SENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQ-LNEE------RVREEATEKTL 81 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHH
Confidence 3455566667777777777777777777788888888888888888888888776665 3333 33366777778
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 252 RMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 252 qeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
..++..++..+-....+|..++++-.+.
T Consensus 82 t~~~~~~en~~~r~~~eir~~~~q~~e~ 109 (459)
T KOG0288|consen 82 TVDVLIAENLRIRSLNEIRELREQKAEF 109 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8888888888888888888887765544
No 197
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.93 E-value=18 Score=37.86 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=21.3
Q ss_pred HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHH
Q 011909 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECD 123 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~ 123 (475)
-++..-+.|+-+.+.--.+-..|+..|+.|....-
T Consensus 31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv 65 (310)
T PF09755_consen 31 SLQQENRVLKRELETEKARCKHLQEENRALREASV 65 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666666666655544
No 198
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.82 E-value=11 Score=41.94 Aligned_cols=139 Identities=22% Similarity=0.207 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 124 LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 203 (475)
Q Consensus 124 ~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~ 203 (475)
.+.-+|+-+..+.-+|+.+...+...-+..+.+=.. ......+..-..+.++..++.+++++..+++ .+.
T Consensus 163 aL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~---~y~~~~KelrdtN~q~~s~~eel~~kt~el~-------~q~ 232 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQ---LYGDCVKELRDTNTQARSGQEELQSKTKELS-------RQQ 232 (596)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 455556666666666666666555555555443221 1223334444455566666666666555544 556
Q ss_pred HHHHHHHHHHHhHHHHHHHH---HHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 204 DESAALNMKRASLEERLKLL---EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 204 ~Ee~~LkqkLasLEeKl~~L---kaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
+++..|.-.++.+..|+.-+ +.+++..|+.-++ -=..++.+.+++++...++-.......+.|..++
T Consensus 233 Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~d----------a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 233 EENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKD----------AQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666666777777777766 5566664444333 2334555566666666666666666666666555
Q ss_pred hh
Q 011909 281 SQ 282 (475)
Q Consensus 281 se 282 (475)
+.
T Consensus 303 s~ 304 (596)
T KOG4360|consen 303 SC 304 (596)
T ss_pred cC
Confidence 44
No 199
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.79 E-value=29 Score=39.97 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHH----
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK---- 185 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI---- 185 (475)
-|.-.-..-++++.++..+...|+...+-++..+..-.+..+...-....|+...+...+.-......+.+|++-|
T Consensus 152 ql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~ 231 (739)
T PF07111_consen 152 QLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQV 231 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhC
Confidence 3333344445555555566666666666666655555555555555555555554443333222222244444444
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 186 ------EFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 186 ------~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
..|..+-..|...+..|.+..+.|-.-..-|.-+++.|
T Consensus 232 p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSL 275 (739)
T PF07111_consen 232 PPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSL 275 (739)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24666667777777777777777766666666666665
No 200
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.72 E-value=21 Score=38.28 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=6.6
Q ss_pred cCCceeeccCC
Q 011909 409 YSGEIVQIPLD 419 (475)
Q Consensus 409 ~~~eiv~~~ld 419 (475)
..|.|..|.-|
T Consensus 392 ~~G~V~~Is~~ 402 (457)
T TIGR01000 392 LDGTITSISSA 402 (457)
T ss_pred EEEEEEEEcCC
Confidence 35666666554
No 201
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.64 E-value=15 Score=36.29 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 011909 187 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL 266 (475)
Q Consensus 187 ~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~ 266 (475)
.-..+|..+..+|+.....-..-..+...|+..++.+...-..+-.++-.+..........++-|...+.+.+-.-....
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aE 164 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAE 164 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 33455666667777766666666666777777777775554444444444444555555566666666666666666666
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 011909 267 QENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 267 kEIqqLReqLdelqseiqs 285 (475)
..++.|...++.|...+..
T Consensus 165 RsVakLeke~DdlE~kl~~ 183 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEE 183 (205)
T ss_pred HHHHHHcccHHHHHHhhHH
Confidence 6666666666666444444
No 202
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.47 E-value=21 Score=37.68 Aligned_cols=37 Identities=5% Similarity=0.061 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909 130 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 166 (475)
Q Consensus 130 ~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s 166 (475)
.....+..-|+.+...+-++....|..+..|+..+..
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344456667777777777777777778887776644
No 203
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.47 E-value=14 Score=42.64 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=18.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 216 (475)
Q Consensus 177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL 216 (475)
+..+|+...+....++.+.-. ...|-..++++.+.++.+
T Consensus 113 kn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al 151 (916)
T KOG0249|consen 113 KNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAAL 151 (916)
T ss_pred hhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHH
Confidence 344444455554444443333 455555555555555443
No 204
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.24 E-value=21 Score=37.34 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhchHHHHhh-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011909 215 SLEERLKLLEADKDSWTQMESVSKETIAG-LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 293 (475)
Q Consensus 215 sLEeKl~~LkaERD~WLkkEIsLke~ISs-l~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~ 293 (475)
.|..++.+|..++.. |...+.. +...+..|..++..|+........++..|+..--.+...+-. +.+..
T Consensus 110 ~L~rkl~qLr~EK~~-------lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~-EQE~l-- 179 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVE-------LENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQ-EQEAL-- 179 (310)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH-HHHHH--
Confidence 455566666555544 2222222 223344555555555554444444444444333333333333 22222
Q ss_pred hhhhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 011909 294 ATSEQKDFSTQIEAAGALIDKLITENIELVE 324 (475)
Q Consensus 294 e~eEn~~Ls~E~E~l~s~vekL~~enq~LeE 324 (475)
+.+|..-+++|-++++.|..
T Consensus 180 -----------vN~L~Kqm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 180 -----------VNRLWKQMDKLEAEKRRLQE 199 (310)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHH
Confidence 23445555666666666655
No 205
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=91.24 E-value=2.2 Score=35.41 Aligned_cols=68 Identities=22% Similarity=0.235 Sum_probs=44.6
Q ss_pred HHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 146 RMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 213 (475)
Q Consensus 146 ~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL 213 (475)
+.+.++.....|+.|..+......++..+...|+.|+..+......+..+..++..+..+...+...+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666677777777777777777777777777777777766666666666666555555554444
No 206
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.09 E-value=15 Score=36.48 Aligned_cols=94 Identities=21% Similarity=0.358 Sum_probs=52.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVV 256 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVk 256 (475)
+..+......+.+.-.....++.++.++...+.+.+..+..++..|+. .+ .++..+..+..++..|..++.
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~--------~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEV--------YNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444443322 33 455677777777777777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 011909 257 ELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 257 eLEesr~eL~kEIqqLReqLdel 279 (475)
.++..+..+..-....-+.|..+
T Consensus 95 ~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 95 QIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666653
No 207
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=91.04 E-value=9 Score=36.29 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 121 ECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS 200 (475)
Q Consensus 121 El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peie 200 (475)
.+..+..++..|..+..+|..+...--+.....|.++-.+++. +.+....|..++.+|+.++.....+...+.....
T Consensus 44 ~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~---~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~ 120 (158)
T PF09744_consen 44 RNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQ---WRQERKDLQSQVEQLEEENRQLELKLKNLSDQSS 120 (158)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 3344555555666666666655554444444444444444333 2222223444444444444443333333333333
Q ss_pred HHHHHHHHHHHHHHhH
Q 011909 201 QLRDESAALNMKRASL 216 (475)
Q Consensus 201 kL~~Ee~~LkqkLasL 216 (475)
.|...+..++.++..+
T Consensus 121 rlee~e~~l~~e~~~l 136 (158)
T PF09744_consen 121 RLEEREAELKKEYNRL 136 (158)
T ss_pred ccchhHHHHHHHHHHH
Confidence 3333333333333333
No 208
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.79 E-value=18 Score=35.73 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909 115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 166 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s 166 (475)
|.-|...+.....++....-+|-.|+.++.+.--.....+..+..|+.....
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~ 63 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT 63 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445555555555555555555566666665555555666666666555443
No 209
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.55 E-value=22 Score=40.67 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=50.3
Q ss_pred HHHHHHHhhhcchhhhhHHHhhHH-------HHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHhHH
Q 011909 89 ILEETVKHLRNERESHIQKEATLE-------GTVQQLQNECDLYKEKV----ATLEET---IQQLQRQNDLRMQKEATLE 154 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~~e~~l~-------e~IkqLq~El~~lk~kl----~~L~et---ikQLe~d~~~~LQkkA~lE 154 (475)
.++|++.+|+..+|+.+--=..|- +.|++|+-=|+.+..+| +.|+.. +--|+++.=++|-.++.+.
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLK 187 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELK 187 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhH
Confidence 689999999999998764433332 45677766666554433 444433 3557777777777777777
Q ss_pred HHHHHHHhhhh
Q 011909 155 ETIKQLRNQND 165 (475)
Q Consensus 155 ~kIKdLe~~~~ 165 (475)
+++--|+....
T Consensus 188 LkltalEkeq~ 198 (861)
T KOG1899|consen 188 LKLTALEKEQN 198 (861)
T ss_pred HHHHHHHHHhh
Confidence 77776665443
No 210
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.35 E-value=12 Score=33.90 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 216 (475)
Q Consensus 181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL 216 (475)
|++.|-...-+++.+..++..|..+...+.+.+..+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444433
No 211
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.20 E-value=21 Score=35.78 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909 112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 163 (475)
Q Consensus 112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~ 163 (475)
+..+.+++++.......+...+.++..|...+..+-.....|+.+..+++..
T Consensus 11 e~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~ 62 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEE 62 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444333343333333333
No 212
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.90 E-value=3.5 Score=33.95 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 170 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qk 170 (475)
|+-.|..|+..++.+.+++.+.+...+.|..+++.++......=..+.+|+.+++...+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888888888888888888888877777777777777666544433
No 213
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.85 E-value=21 Score=35.17 Aligned_cols=8 Identities=13% Similarity=0.758 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 011909 322 LVEKVNDL 329 (475)
Q Consensus 322 LeEe~neL 329 (475)
|..++..+
T Consensus 149 l~~~l~~i 156 (302)
T PF10186_consen 149 LIQELSEI 156 (302)
T ss_pred HHHHHHHH
Confidence 33334333
No 214
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.81 E-value=4 Score=40.08 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=42.8
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKL 315 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL 315 (475)
+....+..++.++..|+.++..+..+.. .....++.++......+..|. ++|++|..+++.+...++.+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~--------~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLK--------EENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666554433 333333344443333322211 36667776666666666666
Q ss_pred HHHHHHHHH
Q 011909 316 ITENIELVE 324 (475)
Q Consensus 316 ~~enq~LeE 324 (475)
.+++..+..
T Consensus 159 ~~~~~~~~~ 167 (206)
T PRK10884 159 NLQLDDKQR 167 (206)
T ss_pred HHHHHHHHH
Confidence 666655554
No 215
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=89.62 E-value=25 Score=37.37 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=52.1
Q ss_pred HHHHHHHhhhcchhhhhH----HHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 89 ILEETVKHLRNERESHIQ----KEATLEGTVQQLQNECD----LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL 160 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~----~e~~l~e~IkqLq~El~----~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL 160 (475)
+..+.|..-+.+...-.+ -..++..++.+|...-+ .+.+.+......+.+|+.++...++.++.+|..|..|
T Consensus 205 ~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L 284 (384)
T PF03148_consen 205 FSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDL 284 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445666666555533222 23455555555555544 6667777788888888888888888888888888888
Q ss_pred HhhhhH
Q 011909 161 RNQNDL 166 (475)
Q Consensus 161 e~~~~s 166 (475)
+..+..
T Consensus 285 ~~ai~~ 290 (384)
T PF03148_consen 285 EKAIRD 290 (384)
T ss_pred HHHHHH
Confidence 877553
No 216
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=89.59 E-value=3.7 Score=34.09 Aligned_cols=68 Identities=26% Similarity=0.330 Sum_probs=39.2
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 209 LNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 209 LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqL 276 (475)
+...+++-.+.|.+|..|-..|-++|..+...|..+...+..+..++..+.........++..|+..+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666777766666666666555555555555555555555555555555555555554444
No 217
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=89.55 E-value=7.8 Score=32.81 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
|.+.+..++.|++.+.++..........++......++....+--++-+|+..+..-.+. -+++|.+|+.+++.
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~---YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ---YEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 456777888899999999988888899999999999999999999999999886555544 56666666666544
No 218
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.53 E-value=28 Score=35.94 Aligned_cols=214 Identities=16% Similarity=0.174 Sum_probs=112.5
Q ss_pred cccccccc-c-cCCCCCCCcchhhhHHH----------HHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHH
Q 011909 51 ADIQNVQV-D-ADRHQSNGAESANLAEA----------ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQL 118 (475)
Q Consensus 51 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqL 118 (475)
|-+--++| + ..+|.|+-+.--.+.-. -+++|+|-|+..---|. +.-.+|...|..|
T Consensus 46 A~~~~tGm~~~~~~~~p~pk~~~~seq~~~~~a~~elq~~ks~~Q~e~~v~a~e~------------~~~rll~d~i~nL 113 (330)
T KOG2991|consen 46 APGVRTGMILSMTNEEPLPKKVRLSEQDFKVMARDELQLRKSWKQYEAYVQALEG------------KYTRLLSDDITNL 113 (330)
T ss_pred CCCCccchhhhhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------cccchhHHHHHhh
Confidence 33333344 3 56677776543222211 24457887773221111 3445666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh--HHHHHHH----HHHHH
Q 011909 119 QNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN--LQSEKEF----WLQKE 192 (475)
Q Consensus 119 q~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q--Lq~EI~~----~~qEl 192 (475)
+.+-..+++..+. ....-.-++...|..|-...++.+.+....+..+--..++.+ |.--|.. ...++
T Consensus 114 k~se~~lkqQ~~~-------a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~el 186 (330)
T KOG2991|consen 114 KESEEKLKQQQQE-------AARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGEL 186 (330)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 5555544444333 333445567777778877777777777766665444444333 1222222 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 193 AALEQKISQLRDESAALNMKRA-----SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 267 (475)
Q Consensus 193 a~L~peiekL~~Ee~~LkqkLa-----sLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~k 267 (475)
...+.+++.++++.++|+.-=. -|=+|-+-|+.|...+=++ ..+-.|..+..++.--+..-.+|.++...|..
T Consensus 187 e~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q--~s~Gria~Le~eLAmQKs~seElkssq~eL~d 264 (330)
T KOG2991|consen 187 EQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQ--ASEGRIAELEIELAMQKSQSEELKSSQEELYD 264 (330)
T ss_pred HHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhh--hhcccHHHHHHHHHHHHhhHHHHHHhHHHHHH
Confidence 5555666666666666654211 2334445555544332111 23345555655555555556666666666666
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 011909 268 ENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 268 EIqqLReqLdelqseiqs 285 (475)
-+..|-+.++..++.+--
T Consensus 265 fm~eLdedVEgmqsTili 282 (330)
T KOG2991|consen 265 FMEELDEDVEGMQSTILI 282 (330)
T ss_pred HHHHHHHHHhcchhhHHH
Confidence 666666666666555544
No 219
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.39 E-value=47 Score=38.33 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEET-IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 189 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~et-ikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~ 189 (475)
+...++.+++.++....++...-+. +.+.++-+...++-...++.++.++.+......+.-..++.+....+..-.+..
T Consensus 106 ~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~ 185 (716)
T KOG4593|consen 106 LLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLH 185 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666555555443333 346666667777777777777777766655554444444444444444444434
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhh--hhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 190 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT--QMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 267 (475)
Q Consensus 190 qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WL--kkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~k 267 (475)
..+...+.+|..-...-....++.+...+.+..+...+..-- -+.+.....+..++..+..--.+..+++.+..++..
T Consensus 186 s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~e 265 (716)
T KOG4593|consen 186 SELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLRE 265 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433322211 111133334444444444444444455555555555
Q ss_pred HHHHHH
Q 011909 268 ENRQLK 273 (475)
Q Consensus 268 EIqqLR 273 (475)
+...++
T Consensus 266 e~~~~r 271 (716)
T KOG4593|consen 266 ELATLR 271 (716)
T ss_pred HHHHHH
Confidence 555443
No 220
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.00 E-value=30 Score=35.57 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
=++..|..|+.++..+..+...+...+.+++.+...+=++++.++.+|++.+....
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777777777777777777776666666666666666666555443
No 221
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.98 E-value=16 Score=40.49 Aligned_cols=148 Identities=16% Similarity=0.140 Sum_probs=89.8
Q ss_pred HHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHhhhhhhhhhh
Q 011909 157 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-EADKDSWTQMES 235 (475)
Q Consensus 157 IKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L-kaERD~WLkkEI 235 (475)
-++|+.++....|.-..+...|+.+.+.+....+.-+...++|++.+.....|..++-.+=-++..| +..+ ..-..|-
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~-~L~~~EE 414 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGY-ALTPDEE 414 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cCCccHH
Confidence 3688888888888888888889999999998887779999999999988888888777775555555 2222 2112222
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh---hhhhhhchHHHHHHHhHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA---TSEQKDFSTQIEAAGALI 312 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e---~eEn~~Ls~E~E~l~s~v 312 (475)
.|...+ ..|..++..- +++...+..|.+++..-.+.+.. .....+.. .+..+.|..++|++..++
T Consensus 415 ~Lr~Kl-------dtll~~ln~P----nq~k~Rl~~L~e~~r~q~~~~~~-~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv 482 (508)
T KOG3091|consen 415 ELRAKL-------DTLLAQLNAP----NQLKARLDELYEILRMQNSQLKL-QESYWIDFDKLIEMKEHLTQEQEALTKLV 482 (508)
T ss_pred HHHHHH-------HHHHHHhcCh----HHHHHHHHHHHHHHHhhcchhcc-ccceeechhhhHHHHHHHHHHHHHHHHHH
Confidence 222222 2233333222 55555666665555544333333 22222111 345577777777777766
Q ss_pred HHHHH
Q 011909 313 DKLIT 317 (475)
Q Consensus 313 ekL~~ 317 (475)
.=+.-
T Consensus 483 ~Ilk~ 487 (508)
T KOG3091|consen 483 NILKG 487 (508)
T ss_pred HHHHh
Confidence 65544
No 222
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=88.95 E-value=67 Score=39.57 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011909 247 DITQLRMQVVELEESRNNLLQENRQL 272 (475)
Q Consensus 247 EiksLqeEVkeLEesr~eL~kEIqqL 272 (475)
+...|..++.+++.++..+..++-..
T Consensus 1009 ~~~~l~~q~~e~~re~~~ld~Qi~~~ 1034 (1294)
T KOG0962|consen 1009 TLRNLERKLKELERELSELDKQILEA 1034 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345555555555555555555444
No 223
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=88.87 E-value=42 Score=37.14 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 261 SRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 334 (475)
Q Consensus 261 sr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~ 334 (475)
...+|..=+.=++++|+.++.++..+....+ .+. -.|...+..|...|+++-.+-..|..-|-
T Consensus 134 ~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~----~~~-------~~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 134 NRQSLNSLLSPLREQLDGFRRQVQDSFGKEA----QER-------HTLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444455566666666666665444333 122 23344455555556666666666655443
No 224
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=88.79 E-value=44 Score=37.31 Aligned_cols=139 Identities=21% Similarity=0.232 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHH-HHHHHHHHhHHHHHHHHHHHHH
Q 011909 193 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT-QLRMQVVELEESRNNLLQENRQ 271 (475)
Q Consensus 193 a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~Eik-sLqeEVkeLEesr~eL~kEIqq 271 (475)
..+...-.-+....+.+.+.+..|..++-.|...=|. +|=+|...|+....++. ..++.+..+-.-.......+..
T Consensus 340 d~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~---qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~ 416 (531)
T PF15450_consen 340 DLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDL---QEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKE 416 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555555566666665555443222 34455556655555444 3444455555555556666666
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhh-------hhhhchHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHhhh
Q 011909 272 LKENVSSLRSQLSSDESKKLQHATS-------EQKDFSTQIEAAGALIDKLITENIELVE-----KVNDLSVKLD 334 (475)
Q Consensus 272 LReqLdelqseiqsLE~Eeal~e~e-------En~~Ls~E~E~l~s~vekL~~enq~LeE-----e~neL~~~l~ 334 (475)
++++++++-.++..+...+.+..-. |-+....++..+-..|-.+....|-|.| +.++...+|+
T Consensus 417 v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~ 491 (531)
T PF15450_consen 417 VQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA 491 (531)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH
Confidence 7777776666666666665555422 3344444555555555555555555544 4444444443
No 225
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.63 E-value=26 Score=34.46 Aligned_cols=9 Identities=44% Similarity=0.578 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 011909 261 SRNNLLQEN 269 (475)
Q Consensus 261 sr~eL~kEI 269 (475)
.+..+-.++
T Consensus 145 ~r~~l~~~l 153 (302)
T PF10186_consen 145 RRRQLIQEL 153 (302)
T ss_pred HHHHHHHHH
Confidence 444444444
No 226
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=88.44 E-value=42 Score=36.58 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH----HHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 124 LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH----IQREGGLEMNIANLQSEKEFWLQKEAALEQKI 199 (475)
Q Consensus 124 ~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~----~Qkea~Lee~I~qLq~EI~~~~qEla~L~pei 199 (475)
.+.+++..|.+++..|-.+-+.+. .+.+|..-+-.+.+++-. ..-..+.+.=-+++..+..+...++..|..+|
T Consensus 360 qHqRELekLreEKdrLLAEETAAT--iSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQY 437 (593)
T KOG4807|consen 360 QHQRELEKLREEKDRLLAEETAAT--ISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQY 437 (593)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555443221 122222222222221111 11122334445678888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 011909 200 SQLRDESAALNMKRASLEERLKLLEADKDSW 230 (475)
Q Consensus 200 ekL~~Ee~~LkqkLasLEeKl~~LkaERD~W 230 (475)
.+-==+++.|.+.+..-...+++-+.|...+
T Consensus 438 SQKCLEnahLaqalEaerqaLRqCQrEnQEL 468 (593)
T KOG4807|consen 438 SQKCLENAHLAQALEAERQALRQCQRENQEL 468 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999998887777777777766553
No 227
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.34 E-value=4.3 Score=34.00 Aligned_cols=46 Identities=28% Similarity=0.360 Sum_probs=22.3
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 240 ~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
.|..++..+.+|..++..+...+..|..++.+|+..-..|+.++.+
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555555555555555555444433
No 228
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.31 E-value=39 Score=39.48 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=9.1
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 011909 304 QIEAAGALIDKLITENIEL 322 (475)
Q Consensus 304 E~E~l~s~vekL~~enq~L 322 (475)
|+.||..+---|+...+.|
T Consensus 537 Ei~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 537 EIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555444455444443
No 229
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.26 E-value=75 Score=39.31 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=14.9
Q ss_pred HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHH
Q 011909 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNE 121 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~E 121 (475)
-+++.|..|..+.+.+-..=+.+...+..|..+
T Consensus 746 el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 746 ELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445444444444444444444444444444
No 230
>PRK10698 phage shock protein PspA; Provisional
Probab=88.24 E-value=28 Score=34.37 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=38.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 108 EATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL 160 (475)
Q Consensus 108 e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL 160 (475)
+.+|.-.|+++++.+...++.++..-...+.++.+...+-...+..+.+..--
T Consensus 26 ~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~A 78 (222)
T PRK10698 26 QKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELA 78 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888777777777777777766666666666555443
No 231
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.11 E-value=34 Score=39.28 Aligned_cols=132 Identities=19% Similarity=0.223 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhh-hhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011909 197 QKISQLRDESAALNMKRASLEERLKLLEADKDSWT-QMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN 275 (475)
Q Consensus 197 peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WL-kkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReq 275 (475)
-.+++.....+.|.+.++..++++..|-.....-. ..++ +.+.-..+...+..|...+..|.....+...++..+..+
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~-~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q 132 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEI-SDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ 132 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccc-ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777788888888888887722222110 0000 011112555555666666666666666777777777777
Q ss_pred HHHHHhhhhhhhhhhhhhh--hhhhhhch-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 011909 276 VSSLRSQLSSDESKKLQHA--TSEQKDFS-TQIEAAGALIDKLITENIELVEKVNDLSVK 332 (475)
Q Consensus 276 LdelqseiqsLE~Eeal~e--~eEn~~Ls-~E~E~l~s~vekL~~enq~LeEe~neL~~~ 332 (475)
+.+++..+..- +.+.. .-+..+|+ ..+|.+..-|..|+.+...=-++|.++...
T Consensus 133 ie~l~~~l~g~---~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~ 189 (660)
T KOG4302|consen 133 IEKLCEELGGP---EDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEE 189 (660)
T ss_pred HHHHHHHhcCC---ccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776662 21111 34667777 788888888888877776555555555443
No 232
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.90 E-value=5.2 Score=32.93 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=21.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 215 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLas 215 (475)
.+..++.|..|-+.....+...-.++.+|+.++..+++.+..
T Consensus 24 ~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 24 HEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555555555555443
No 233
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.87 E-value=11 Score=37.76 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011909 219 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 289 (475)
Q Consensus 219 Kl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~E 289 (475)
-|..+..+++.++..-...-+.|...+.+|..|..-|..++..+......+..+.+.+..+..++..+..+
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666666444444666666666666666666666666666666666666666555555555554444
No 234
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.87 E-value=5.1 Score=34.12 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH-------hhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR-------EGGLEMNIANLQSEKEFWLQKEAALEQKIS 200 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qk-------ea~Lee~I~qLq~EI~~~~qEla~L~peie 200 (475)
.+|+.....++-.++-+...|.+|+..+....+. +..|..+..+|+.+-..|...+..|..+++
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555555555555666665555544443 334666667777777777777766665554
No 235
>PRK10698 phage shock protein PspA; Provisional
Probab=87.73 E-value=30 Score=34.15 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=111.2
Q ss_pred HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 169 (475)
Q Consensus 90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q 169 (475)
+++++..++...-..|-.+..++..+.+++..+..+..+-...-. +.=++=-..+|..+...+..+..|+........
T Consensus 36 m~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~--~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~ 113 (222)
T PRK10698 36 MEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR--KEKEDLARAALIEKQKLTDLIATLEHEVTLVDE 113 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666667777777888888888887766654433111 011222345677788888899999999888888
Q ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHhhhhhhhhhhchH
Q 011909 170 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA-----------LNMKRASLEERLKLLEADKDSWTQMESVSK 238 (475)
Q Consensus 170 kea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~-----------LkqkLasLEeKl~~LkaERD~WLkkEIsLk 238 (475)
.-..|...+..|+..|..+..+...|..++......... -...+..+|.++..+.+.=+.. ..
T Consensus 114 ~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~---~~--- 187 (222)
T PRK10698 114 TLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH---GF--- 187 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh---hc---
Confidence 888888899999999999888888888888777664332 2235666777777765544431 00
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 239 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 239 e~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqL 276 (475)
. .-.+|..+...|+. ......|+..|+.++
T Consensus 188 --~-----~~~~l~~e~~~le~-~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 188 --G-----KQKSLDQQFAELKA-DDEISEQLAALKAKM 217 (222)
T ss_pred --c-----CCCCHHHHHHHhhc-cchHHHHHHHHHHHh
Confidence 0 01234555555543 345777777777655
No 236
>COG5293 Predicted ATPase [General function prediction only]
Probab=87.67 E-value=50 Score=36.63 Aligned_cols=85 Identities=9% Similarity=0.102 Sum_probs=62.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHH
Q 011909 207 AALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEE---------SRNNLLQENRQLKENV 276 (475)
Q Consensus 207 ~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEe---------sr~eL~kEIqqLReqL 276 (475)
.+.++.+..+++=-+.+-++|-.+|+.|| .++..+...+..+..|.++..++=. ...-+-+++-.++-.|
T Consensus 316 g~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~el 395 (591)
T COG5293 316 GQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGEL 395 (591)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhH
Confidence 35667777888888888999999999999 9999999999999999988877644 2233555555666666
Q ss_pred HHHHhhhhhhhhhhh
Q 011909 277 SSLRSQLSSDESKKL 291 (475)
Q Consensus 277 delqseiqsLE~Eea 291 (475)
.+++-++..+.+-.+
T Consensus 396 ae~~~rie~l~k~~~ 410 (591)
T COG5293 396 AELEYRIEPLRKLHA 410 (591)
T ss_pred HHHHHhhhHHHHHHH
Confidence 666555555554444
No 237
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=87.61 E-value=18 Score=31.28 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011909 190 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQEN 269 (475)
Q Consensus 190 qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEI 269 (475)
.|+-.|+..|..+..........+..+|.++..|.+|+..-=++--.+.+...++..++..|..++.--.+....|..--
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E 82 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETE 82 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46677778888888888888888888888888887776663223226666666666666666666665555555555433
Q ss_pred HHHHHHHH
Q 011909 270 RQLKENVS 277 (475)
Q Consensus 270 qqLReqLd 277 (475)
..++..|.
T Consensus 83 ~~~~~~l~ 90 (96)
T PF08647_consen 83 KEFVRKLK 90 (96)
T ss_pred HHHHHHHH
Confidence 33433333
No 238
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=87.46 E-value=82 Score=38.85 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 141 RQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 141 ~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
.+....+...-.+-...+.+........+....+++.+..|+.+|....+++..+.+.+.-+.............+..+.
T Consensus 850 ~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~ 929 (1294)
T KOG0962|consen 850 IEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNER 929 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHh
Confidence 33444444455555556666666666777777777888888888888777777777666655555444433333333331
Q ss_pred ---HHH-------HHhhhhhhhhhhchH-------------HHHhhhHHHHHHHHHHHHHhHHH---------HHHHHHH
Q 011909 221 ---KLL-------EADKDSWTQMESVSK-------------ETIAGLSVDITQLRMQVVELEES---------RNNLLQE 268 (475)
Q Consensus 221 ---~~L-------kaERD~WLkkEIsLk-------------e~ISsl~~EiksLqeEVkeLEes---------r~eL~kE 268 (475)
..+ ..++.+.|+.=..+. ..+......+..+...+.+.... ...=+-+
T Consensus 930 ~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~ 1009 (1294)
T KOG0962|consen 930 NTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLT 1009 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 111111111111000 01111111122222222222111 1111112
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhh----hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 269 NRQLKENVSSLRSQLSSDESKKLQHA----TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 334 (475)
Q Consensus 269 IqqLReqLdelqseiqsLE~Eeal~e----~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~ 334 (475)
...|..++..+.+++..+....+-.. .++-..|..+.+++.+.-..+.-++.+++..+.-+..+|.
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 22333333344444444333332222 3577788888888888888888888888888888877775
No 239
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.28 E-value=12 Score=33.96 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=20.8
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 278 (475)
Q Consensus 237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLde 278 (475)
|...|..+..++..++.++..|+..+..+..||-.|-...+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555544444443
No 240
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=86.96 E-value=19 Score=39.21 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=48.8
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 149 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 149 kkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
.++..+.++.+|..+.....++...+-+++.-++.+......++...+.++..|++++..+.......++.-
T Consensus 7 ~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~ 78 (459)
T KOG0288|consen 7 QKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE 78 (459)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666677777777777777777777777778888888777776666544433
No 241
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.70 E-value=4.9 Score=44.06 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=54.2
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHH
Q 011909 237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI 316 (475)
Q Consensus 237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~ 316 (475)
-...|..+-...+.++.++..|......|.+|+..|+.+......++++ .|..+...+....++|.
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~--------------av~~~~~~~~~~~~ql~ 122 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ--------------AVQSETQELTKEIEQLK 122 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--------------HHHhhhHHHHHHHHHHH
Confidence 3456777777888888888888888888888887777766666555555 23333333444444555
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011909 317 TENIELVEKVNDLSVKLD 334 (475)
Q Consensus 317 ~enq~LeEe~neL~~~l~ 334 (475)
.+.++|...+.+|..+|+
T Consensus 123 ~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 123 SERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555566666666666554
No 242
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.53 E-value=29 Score=32.62 Aligned_cols=132 Identities=22% Similarity=0.183 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 197 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 197 peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqL 276 (475)
-+|++|+-++..|..++.+-...+..|+.---.-++.=...++.+.....++..++.++...+.....+..++...+...
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777666666666533222211111144444444444444444444444444444444444444444
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 277 SSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 331 (475)
Q Consensus 277 delqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~ 331 (475)
+.++.....|...-.+. ..-.|-...+..-..++.+...-..|+.++..|..
T Consensus 122 ~k~~~~~~~l~~~~~~~---~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 122 DKLRKQNKKLRQQGGLL---GVPALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333222211 11112222333444455555555555555555544
No 243
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=86.45 E-value=82 Score=37.82 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhh
Q 011909 195 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 232 (475)
Q Consensus 195 L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLk 232 (475)
....+..+...-..+...+..+...+..++..-..||.
T Consensus 722 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 759 (1047)
T PRK10246 722 VHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQ 759 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555555555554
No 244
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.11 E-value=45 Score=34.45 Aligned_cols=82 Identities=22% Similarity=0.226 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHhHHHHH
Q 011909 82 LQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL---EET-IQQLQRQNDLRMQKEATLEETI 157 (475)
Q Consensus 82 ~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L---~et-ikQLe~d~~~~LQkkA~lE~kI 157 (475)
+-++-..-|+++--.|.+=-+.-..-|+.|+-.+.+++..+..+.....-| .++ +..++.++-+..|.+..+|..+
T Consensus 21 l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddl 100 (333)
T KOG1853|consen 21 LHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDL 100 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555444444444444555666666666666555444222221 122 2455666666666666666666
Q ss_pred HHHHhh
Q 011909 158 KQLRNQ 163 (475)
Q Consensus 158 KdLe~~ 163 (475)
.+++..
T Consensus 101 sqt~ai 106 (333)
T KOG1853|consen 101 SQTHAI 106 (333)
T ss_pred HHHHHH
Confidence 655443
No 245
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=85.74 E-value=36 Score=37.24 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHH
Q 011909 179 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLR 252 (475)
Q Consensus 179 ~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLq 252 (475)
..+..+.+....++..+..+++.+..++..+...+.+++.+-.+|-.+.+.+.+.-.....++-.++.++.+|.
T Consensus 179 ~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle 252 (447)
T KOG2751|consen 179 EDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLE 252 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Confidence 34444555556666677777778888888888888888777777755555544443333333333333333333
No 246
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.71 E-value=81 Score=37.07 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=3.9
Q ss_pred HHHHHHHhhh
Q 011909 89 ILEETVKHLR 98 (475)
Q Consensus 89 ~~eeti~~l~ 98 (475)
.+-+.++.++
T Consensus 175 ~l~e~~~~~~ 184 (908)
T COG0419 175 LLKEVIKEAK 184 (908)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 247
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.37 E-value=13 Score=31.24 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=8.8
Q ss_pred HHHHHHHHhHHHHHHHHHhhhh
Q 011909 144 DLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 144 ~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
..++-.++-+...|.+|+.++.
T Consensus 14 qqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 14 QQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333444444444444433
No 248
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=85.32 E-value=69 Score=35.89 Aligned_cols=160 Identities=17% Similarity=0.251 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 011909 139 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE--------AALEQKISQLRDESAALN 210 (475)
Q Consensus 139 Le~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEl--------a~L~peiekL~~Ee~~Lk 210 (475)
|+.-...+++.+..+..+|--|...++..++ .|..+|..+++++.....+. ..+...+..+.+..+.+.
T Consensus 349 le~sv~~l~~~lkDLd~~~~aLs~rld~qEq---tL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~Lp 425 (531)
T PF15450_consen 349 LEDSVAELMRQLKDLDDHILALSWRLDLQEQ---TLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLP 425 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444445555555555555555444333 36666666666554433322 223344445555566667
Q ss_pred HHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011909 211 MKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 289 (475)
Q Consensus 211 qkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~E 289 (475)
+.+..+..+....+++=|.-+-.|- .....|..+..+++.+..+++-+.+.... ..|+..+-+|. ..++..|++.
T Consensus 426 qqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~--rkiaeiqg~l~--~~qi~kle~s 501 (531)
T PF15450_consen 426 QQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG--RKIAEIQGKLA--TNQIMKLENS 501 (531)
T ss_pred HHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh--hhHHHHHHHHH--HHHHHHHHHH
Confidence 7777777777777887777777777 77788888888888888888877765544 23666666666 5556665555
Q ss_pred hhhhhhhhhhhchHHH
Q 011909 290 KLQHATSEQKDFSTQI 305 (475)
Q Consensus 290 eal~e~eEn~~Ls~E~ 305 (475)
+.-.-+-=|.++++|+
T Consensus 502 iq~nKtiqn~kfntEt 517 (531)
T PF15450_consen 502 IQTNKTIQNLKFNTET 517 (531)
T ss_pred HHHHHHHHhcccchHH
Confidence 5333344566677666
No 249
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.23 E-value=42 Score=33.30 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=2.3
Q ss_pred cCCCCC
Q 011909 442 PLTDAP 447 (475)
Q Consensus 442 p~~dap 447 (475)
-|..-|
T Consensus 239 ~l~~LP 244 (251)
T PF11932_consen 239 ELLKLP 244 (251)
T ss_pred HHhccC
Confidence 333333
No 250
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.07 E-value=66 Score=35.47 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=23.9
Q ss_pred HHHHhhhHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 238 KETIAGLSVDITQLRMQVV----ELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 238 ke~ISsl~~EiksLqeEVk----eLEesr~eL~kEIqqLReqLdelq 280 (475)
+..+..+..++..++.+.. .+.........|++.|+.++....
T Consensus 336 e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555554444443 233344456777888887777654
No 251
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.97 E-value=13 Score=42.09 Aligned_cols=46 Identities=20% Similarity=0.381 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909 184 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 229 (475)
Q Consensus 184 EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~ 229 (475)
++.+...++..+...+++|..++..|+..+..+...+..|.++.+.
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444333
No 252
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=84.90 E-value=29 Score=31.26 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 113 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKE 150 (475)
Q Consensus 113 e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkk 150 (475)
..+++|...+..+...+..|...+.+|......+...+
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777777777766666666554444
No 253
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.48 E-value=4.7 Score=37.57 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 193 AALEQKISQLRDESAALNMKRASL 216 (475)
Q Consensus 193 a~L~peiekL~~Ee~~LkqkLasL 216 (475)
..|..++..|.++...++.....+
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l 98 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSL 98 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444333333333333333
No 254
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=84.19 E-value=54 Score=36.23 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 011909 118 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQ 197 (475)
Q Consensus 118 Lq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~p 197 (475)
+++|+.++..++..-.+++..++.+...+-...-.+|..+++|++. ..++|..+-.+|+.|..-.-.+..
T Consensus 307 s~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~----------~~~q~~~~h~~ka~~~~~~~~l~~ 376 (554)
T KOG4677|consen 307 SRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESA----------GQTQIFRKHPRKASILNMPLVLTL 376 (554)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------hHHHHHHhhhHhhhhhhchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHH
Q 011909 198 KISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDIT--QLRMQVVELEESRNNLLQENRQLKE 274 (475)
Q Consensus 198 eiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~Eik--sLqeEVkeLEesr~eL~kEIqqLRe 274 (475)
.|+++.-+....++-+--.--+.+ .=| +-+..|..+...+. .+..++..|+....+|-.-+-+-+.
T Consensus 377 ~~ec~~~e~e~~~~~~~r~~~~~q-----------ski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~ 445 (554)
T KOG4677|consen 377 FYECFYHETEAEGTFSSRVNLKKQ-----------SKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQI 445 (554)
T ss_pred HHHHHHHHHHHhhhhhhhccchhh-----------ccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHH
Q 011909 275 NVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALI 312 (475)
Q Consensus 275 qLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~v 312 (475)
+|+.+ ++++..|+.++|+|..-+
T Consensus 446 ~le~v---------------~~~~~~ln~~lerLq~~~ 468 (554)
T KOG4677|consen 446 GLERV---------------VEILHKLNAPLERLQEYV 468 (554)
T ss_pred HHHHH---------------HHHHhhhhhhHHHHHHHh
No 255
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.12 E-value=14 Score=41.79 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh--hhhhhhhhhchHHHHhhhHHHHHHHHHHH
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD--KDSWTQMESVSKETIAGLSVDITQLRMQV 255 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE--RD~WLkkEIsLke~ISsl~~EiksLqeEV 255 (475)
+..+..++......+..++.+...|..+...++..+..|+.++..+..+ -+.|...|| ..+...|..|+.++
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei------~~~~~~I~~L~~~L 490 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREI------RARDRRIERLEKEL 490 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444445555544221 223344444 33333444444444
Q ss_pred HHhHHHHHHHHHHHHHH
Q 011909 256 VELEESRNNLLQENRQL 272 (475)
Q Consensus 256 keLEesr~eL~kEIqqL 272 (475)
.+-......|..++..+
T Consensus 491 ~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 491 EEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 256
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=83.99 E-value=66 Score=36.91 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 164 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~ 164 (475)
++...+..+-+. .+..+......++.-|+.+...+-++....|..+.+|+..+
T Consensus 245 ilN~la~~Yi~~--~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 245 ILNSIANNYLQQ--NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444443333 33444555566677777777777777777888888888776
No 257
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=83.97 E-value=9.7 Score=31.29 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=36.6
Q ss_pred HhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 241 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 288 (475)
Q Consensus 241 ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~ 288 (475)
-..+..++..|+.++..+..++..|...+..-+.+++.+-+++.+++.
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344566677778888888888888888888888888888888777654
No 258
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.84 E-value=83 Score=35.63 Aligned_cols=119 Identities=13% Similarity=0.223 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhhhcch-----------hhhhHHHhh----------HHHHHHHH-----------HHHHHHHHHHHH
Q 011909 83 QREAMAILEETVKHLRNER-----------ESHIQKEAT----------LEGTVQQL-----------QNECDLYKEKVA 130 (475)
Q Consensus 83 ~~~~~~~~eeti~~l~~e~-----------~~~~~~e~~----------l~e~IkqL-----------q~El~~lk~kl~ 130 (475)
|+-.++.=+|.||+|-+.. .+|.++-.. .+.+|..| .++|+.++.+.+
T Consensus 262 qkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~IerLkeqr~rderE~~EeIe~~~ke~k 341 (654)
T KOG4809|consen 262 QKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERIIERLKEQRERDERERLEEIESFRKENK 341 (654)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 4555666788999997765 233333111 34555554 355666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 131 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 208 (475)
Q Consensus 131 ~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~ 208 (475)
-|.+-+.+|+.+ .+..+..+.+|++...+....-..+..+|+.+.--+++...+...|..++.+.++....
T Consensus 342 dLkEkv~~lq~~-------l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd 412 (654)
T KOG4809|consen 342 DLKEKVNALQAE-------LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD 412 (654)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 666666666654 44556667777777777666666677778888888888888888888877777665543
No 259
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=83.61 E-value=33 Score=30.89 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=19.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 216 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL 216 (475)
+.+.+.-|+..++.....+..+...+..+.+.-..+.+.+..+
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444333
No 260
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=83.60 E-value=1.8 Score=45.41 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011909 192 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENR 270 (475)
Q Consensus 192 la~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIq 270 (475)
++.|...+..+...-+.+.-.|..+...+..|+..=+. +...| ++...+..+...+..|+..+..++....++..-+.
T Consensus 58 iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~-lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 58 ISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSS-LSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 33333333333333333333334444444444333333 34555 66667777777777777777777777777777776
Q ss_pred HHHHHHHHHHhhhhhhhhhhh
Q 011909 271 QLKENVSSLRSQLSSDESKKL 291 (475)
Q Consensus 271 qLReqLdelqseiqsLE~Eea 291 (475)
.+--.|..++.++..||....
T Consensus 137 t~aL~ItdLe~RV~~LEs~~s 157 (326)
T PF04582_consen 137 TQALNITDLESRVKALESGSS 157 (326)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT
T ss_pred hhcchHhhHHHHHHHHhcCCC
Confidence 666666777777777666543
No 261
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=83.34 E-value=43 Score=39.12 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 187 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 187 ~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
.|.-+..+|+-++++.......++.+|...+.+=..|
T Consensus 491 ~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL 527 (861)
T PF15254_consen 491 QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQIL 527 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHh
Confidence 3444444555555555555555555555554444444
No 262
>PLN02939 transferase, transferring glycosyl groups
Probab=83.07 E-value=1.2e+02 Score=36.70 Aligned_cols=196 Identities=17% Similarity=0.187 Sum_probs=104.9
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhh---hhHHH
Q 011909 101 RESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG---GLEMN 177 (475)
Q Consensus 101 ~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea---~Lee~ 177 (475)
--+.+|-|.+. ..|+.-+.-|-.+.+--...-++....-.+.+.+-.++..+|.++.+-........|-.. .++++
T Consensus 124 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (977)
T PLN02939 124 QLSDFQLEDLV-GMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQ 202 (977)
T ss_pred ccccccHHHHH-HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHH
Confidence 34567766654 556665555554444444444444555555555666666666666665555444444433 36777
Q ss_pred HHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHH
Q 011909 178 IANLQSEKEFWLQKE----AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 253 (475)
Q Consensus 178 I~qLq~EI~~~~qEl----a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqe 253 (475)
+..|+.++....--. ..+..++.-|+.+|..|+.-+..+.+++...+ ...+.+-.+..+...|..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 271 (977)
T PLN02939 203 LEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVA-----------ETEERVFKLEKERSLLDA 271 (977)
T ss_pred HHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHH
Confidence 888888876543321 23566777777777777766666655554331 222233333333333333
Q ss_pred HHHHhHHHHH---------------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHH
Q 011909 254 QVVELEESRN---------------NLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALID 313 (475)
Q Consensus 254 EVkeLEesr~---------------eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~ve 313 (475)
-+.+||.... .|-..+..|+.-|+.+.. ..+.|......|++|...++.|.+.++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (977)
T PLN02939 272 SLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATN-----QVEKAALVLDQNQDLRDKVDKLEASLK 341 (977)
T ss_pred HHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3333333221 233444444444443322 222344446789999999998876443
No 263
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.98 E-value=67 Score=33.92 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=22.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
|..|+.++.....+++.+...|..-+-..-.++.+++.+...+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 4556666666666666665544444444444444444444443
No 264
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.63 E-value=31 Score=29.78 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 128 KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 207 (475)
Q Consensus 128 kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~ 207 (475)
++..+....+.+...........+.+|.++..|.....-.-|+-.....-...+..++.....-++.-..-+.+|.+-+.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~ 83 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEK 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555544444444444434444444444433333434444444444444
Q ss_pred HHHHHHHhH
Q 011909 208 ALNMKRASL 216 (475)
Q Consensus 208 ~LkqkLasL 216 (475)
.+...+..+
T Consensus 84 ~~~~~l~~~ 92 (96)
T PF08647_consen 84 EFVRKLKNL 92 (96)
T ss_pred HHHHHHHHh
Confidence 444444443
No 265
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=82.44 E-value=22 Score=34.67 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=45.7
Q ss_pred hhhhh-chHHHHhhhHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHH
Q 011909 231 TQMES-VSKETIAGLSVDITQLRMQVVELEES--RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEA 307 (475)
Q Consensus 231 LkkEI-sLke~ISsl~~EiksLqeEVkeLEes--r~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~ 307 (475)
|..+| .|++.+.++..++..+..+|.+|.+. ..++.++|+.|+..+...+.++.+|..-.-..+-++.+-.-.+-++
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~ 163 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQK 163 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 44455 55555555555555555555555552 3445666666666666665555555544333333455555555566
Q ss_pred HHhHHHHH
Q 011909 308 AGALIDKL 315 (475)
Q Consensus 308 l~s~vekL 315 (475)
.|....+-
T Consensus 164 ~~~~wrk~ 171 (201)
T KOG4603|consen 164 YCKEWRKR 171 (201)
T ss_pred HHHHHHHH
Confidence 66655543
No 266
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.32 E-value=1e+02 Score=35.56 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHH
Q 011909 181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE 260 (475)
Q Consensus 181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEe 260 (475)
++..+.........+..+|..|+.+-..++..+..+......+..+-...++ ++ ...++.+......|.... .-+.
T Consensus 225 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~-~~--~~~~~~L~~~~~~l~~~~-~e~~ 300 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALK-ES--NTLQSDLESLEENLVEKK-KEKE 300 (670)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHH-HHHH
Confidence 3333444344444444444445444444444444444444444333333111 11 112444444444444444 4446
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909 261 SRNNLLQENRQLKENVSSLRSQLSSDESKKL 291 (475)
Q Consensus 261 sr~eL~kEIqqLReqLdelqseiqsLE~Eea 291 (475)
.+..|..+|++|+-.|--.++-++-+..+..
T Consensus 301 ~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~ 331 (670)
T KOG0239|consen 301 ERRKLHNEILELKGNIRVFCRVRPLLPSEKQ 331 (670)
T ss_pred HHHHHHHHHHHhhcCceEEEEecCCCccccc
Confidence 7777888888887777765555555554444
No 267
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.29 E-value=47 Score=31.63 Aligned_cols=100 Identities=20% Similarity=0.298 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHH
Q 011909 182 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEE 260 (475)
Q Consensus 182 q~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEe 260 (475)
+.+.....+++..++.++...-.+.+.|.......-.+|...-..-+.+...+| .--+.-..+...+..++.+...|..
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~ 105 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRE 105 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443334333444444556777 7777777888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 011909 261 SRNNLLQENRQLKENVSSLRS 281 (475)
Q Consensus 261 sr~eL~kEIqqLReqLdelqs 281 (475)
.+..|...+..+..-+..+..
T Consensus 106 rRD~LErrl~~l~~tierAE~ 126 (159)
T PF05384_consen 106 RRDELERRLRNLEETIERAEN 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777776533
No 268
>PF13166 AAA_13: AAA domain
Probab=82.24 E-value=92 Score=35.01 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=10.6
Q ss_pred CCCcCCCchhHH-HHHHhhcccc
Q 011909 445 DAPLIGAPFRLV-SFVAKYVSGA 466 (475)
Q Consensus 445 dap~igapfrli-sfva~yvsga 466 (475)
.+..||-.-|-| -...+|.-|.
T Consensus 632 ~~~~~~N~~RriLE~yf~~~~~~ 654 (712)
T PF13166_consen 632 SAYNIPNVMRRILEAYFKFPGKI 654 (712)
T ss_pred hHHhhHHHhHHHHHHHHhhCCCC
Confidence 455666555532 2225554443
No 269
>PF13514 AAA_27: AAA domain
Probab=82.19 E-value=1.2e+02 Score=36.45 Aligned_cols=16 Identities=38% Similarity=0.223 Sum_probs=8.4
Q ss_pred CceeeccCCCccchhh
Q 011909 411 GEIVQIPLDDKEVQDL 426 (475)
Q Consensus 411 ~eiv~~~ld~~~~~~~ 426 (475)
++-+||=|||.-|+=+
T Consensus 1050 ~~~lP~IlDD~fvnfD 1065 (1111)
T PF13514_consen 1050 GEPLPFILDDIFVNFD 1065 (1111)
T ss_pred CCCCcEEeeCCccccC
Confidence 4445555666555433
No 270
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.89 E-value=8.2 Score=31.27 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=39.2
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 282 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse 282 (475)
.+.+.|......+..+...+.+.+.....|..+|..|+..+++++++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45566777788888999999999999999999999999999988753
No 271
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=81.58 E-value=17 Score=31.87 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 244 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 244 l~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
....+..|.+.+..++.....+.+.+..++.++.+++..+..
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666666666666555443
No 272
>PRK11519 tyrosine kinase; Provisional
Probab=81.01 E-value=65 Score=36.91 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 127 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 127 ~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
.+......++.-|+.+...+-++....|..+.+|+..+.
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444445556666666666666777777777777776654
No 273
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.51 E-value=85 Score=33.47 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=42.7
Q ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909 170 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 229 (475)
Q Consensus 170 kea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~ 229 (475)
+|..+..++..+-.+......+++.+..+|..+..-...+...|+.+.+++.+.|.+=+.
T Consensus 260 REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 260 REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666677777777777778888888888888888877777777777776554443
No 274
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=79.64 E-value=1.2e+02 Score=34.57 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcch
Q 011909 77 ERQHLLQREAMAILEETVKHLRNER 101 (475)
Q Consensus 77 ~~~~~~~~~~~~~~eeti~~l~~e~ 101 (475)
.|....+++.....-++++++.++.
T Consensus 347 ~r~~e~~kd~~~~~~~~~~~~~~sl 371 (607)
T KOG0240|consen 347 KRKLEKKKDKNVALKEELEKLRNSL 371 (607)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5566667777777888888888773
No 275
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=79.40 E-value=14 Score=30.84 Aligned_cols=68 Identities=24% Similarity=0.282 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHH
Q 011909 194 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEES 261 (475)
Q Consensus 194 ~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEes 261 (475)
..+..|..|..+|=.|+-++-.+++++..+-.+...-+.++. .|+-.+.++..++..+++.+..++.+
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888988888888888866333333333443 66666666655555555555555443
No 276
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=79.08 E-value=63 Score=31.13 Aligned_cols=110 Identities=19% Similarity=0.191 Sum_probs=54.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHhhhhh----hhhhhchHHHHhhhHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK-LLEADKDSW----TQMESVSKETIAGLSVDI 248 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~-~LkaERD~W----LkkEIsLke~ISsl~~Ei 248 (475)
++.-|..++..+.....-++.+......+..+...+.......+.+.. .|.++++.. |..-..+...+..+...+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~ 107 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQL 107 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444443 334444432 222225555666666666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 249 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 283 (475)
Q Consensus 249 ksLqeEVkeLEesr~eL~kEIqqLReqLdelqsei 283 (475)
..+...+..|......+...+..++.+...+..+.
T Consensus 108 ~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 108 DQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666665554443
No 277
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=79.01 E-value=1.3e+02 Score=34.73 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011909 194 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 272 (475)
Q Consensus 194 ~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqL 272 (475)
.+.-.+..+........+++..+..++..|+++-.. +..+. .+.+.+...-..+..+..++.++. ..+.... .-
T Consensus 224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~---~~l~~~~-~e 298 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAELKE-LNDQVSLLTREVQEALKESNTLQSDLESLE---ENLVEKK-KE 298 (670)
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HH
Confidence 444445555555555555555555555555443333 33334 455555555444444444433333 3333333 22
Q ss_pred HHHHHHHHhhhhhhhhhh-hhhh
Q 011909 273 KENVSSLRSQLSSDESKK-LQHA 294 (475)
Q Consensus 273 ReqLdelqseiqsLE~Ee-al~e 294 (475)
.+.-.++..+++.|.-.+ +.|+
T Consensus 299 ~~~r~kL~N~i~eLkGnIRV~CR 321 (670)
T KOG0239|consen 299 KEERRKLHNEILELKGNIRVFCR 321 (670)
T ss_pred HHHHHHHHHHHHHhhcCceEEEE
Confidence 233334444555554444 5665
No 278
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.77 E-value=98 Score=33.16 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 82 LQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR 161 (475)
Q Consensus 82 ~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe 161 (475)
|+--|-..++..||++-+.++- ++++.+.+.+...+.+.|...-.+|.++.-...--.+...-++..|+
T Consensus 65 lk~aa~~llq~kirk~~e~~eg-----------lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE 133 (401)
T PF06785_consen 65 LKTAAGQLLQTKIRKITEKDEG-----------LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLE 133 (401)
T ss_pred HHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3444555788889988766543 45556666777777777777777888777777666777777777777
Q ss_pred hhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHH
Q 011909 162 NQNDLHIQREGGLEMNIANLQSEKEFWLQKEAAL 195 (475)
Q Consensus 162 ~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L 195 (475)
..+.-+.+..+.++.++..+..++-.++.+-.+|
T Consensus 134 ~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 134 GLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 7777777777777777777777665444433333
No 279
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.20 E-value=1.1e+02 Score=33.56 Aligned_cols=28 Identities=39% Similarity=0.317 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQN 143 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~ 143 (475)
++|+.-++++...-+.|+.+++|+.+|.
T Consensus 302 rqlqrdlE~~~~~r~ele~~~~qs~ed~ 329 (542)
T KOG0993|consen 302 RQLQRDLEELIETRAELEHTEQQSQEDI 329 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3444444444444444444444444433
No 280
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.76 E-value=19 Score=39.73 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 175 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 175 ee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
.++|..|=........++..+..+=+.|+.+|..|+++...+..+++
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34555555555555555666666666666666666655555554444
No 281
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=77.47 E-value=1.5e+02 Score=34.69 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHhhhhHHHHHhh-----hhHHHHHhHHHHHHHHHHHH---HHHHHHHH
Q 011909 132 LEETIQQLQRQNDLRMQ---KEATLEETIKQLRNQNDLHIQREG-----GLEMNIANLQSEKEFWLQKE---AALEQKIS 200 (475)
Q Consensus 132 L~etikQLe~d~~~~LQ---kkA~lE~kIKdLe~~~~s~~Qkea-----~Lee~I~qLq~EI~~~~qEl---a~L~peie 200 (475)
|.+.|++|..+.+.-+- +-..|+.++.-|+..++-.. ... .|-+++..|+.|+...+.+- -.|+.+++
T Consensus 460 L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~-~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle 538 (762)
T PLN03229 460 LNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKAN-SQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLD 538 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-cccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 34555666555554332 23345555555554433321 000 14455777777776665552 34555555
Q ss_pred HHHHHH
Q 011909 201 QLRDES 206 (475)
Q Consensus 201 kL~~Ee 206 (475)
.|+..-
T Consensus 539 ~Lk~~~ 544 (762)
T PLN03229 539 MLNEFS 544 (762)
T ss_pred HHHHHH
Confidence 555444
No 282
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.28 E-value=18 Score=33.65 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011909 313 DKLITENIELVEKVNDL 329 (475)
Q Consensus 313 ekL~~enq~LeEe~neL 329 (475)
..|.+++..|+.++..|
T Consensus 119 ~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444433333
No 283
>PRK04406 hypothetical protein; Provisional
Probab=76.79 E-value=18 Score=30.24 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011909 112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 164 (475)
Q Consensus 112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~ 164 (475)
+++|..+...|..++.+++..+.++..|..-....-+.+..+...++.|.+..
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888877777777777776666665544
No 284
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=76.65 E-value=1.1e+02 Score=32.50 Aligned_cols=137 Identities=16% Similarity=0.239 Sum_probs=66.3
Q ss_pred HHHHHHHhHHHHHHHHHhhhhHHHHH---------hhhhHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--
Q 011909 145 LRMQKEATLEETIKQLRNQNDLHIQR---------EGGLEMNIANLQSEKEFWL-QKEAALEQKISQLRDESAALNMK-- 212 (475)
Q Consensus 145 ~~LQkkA~lE~kIKdLe~~~~s~~Qk---------ea~Lee~I~qLq~EI~~~~-qEla~L~peiekL~~Ee~~Lkqk-- 212 (475)
..+.+.|.+|-+|..|+..++....+ -.-+-..|..|...+.... ..+..+..++..|..+...+..+
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~ 285 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRK 285 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46889999999999999999983221 1223344444444444331 13344444444444433333322
Q ss_pred ----HHhHHHHHHHHHHhhhhh--hhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 213 ----RASLEERLKLLEADKDSW--TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 213 ----LasLEeKl~~LkaERD~W--LkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
....+.||..|+.=-..| +..-+ .+=.++. .+..|=.+....-.....+......+...+..|..-+..
T Consensus 286 ~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~----tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ 361 (388)
T PF04912_consen 286 EAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLK----TLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNK 361 (388)
T ss_pred cccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224456666664444444 11222 2222222 223334444444444444555555555555555444444
No 285
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=76.27 E-value=18 Score=31.14 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011909 242 AGLSVDITQLRMQVVELEESRNNLLQEN 269 (475)
Q Consensus 242 Ssl~~EiksLqeEVkeLEesr~eL~kEI 269 (475)
..+..+...+..++..++.....+..++
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 286
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=75.40 E-value=89 Score=30.95 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=44.6
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011909 148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIAN-LQSEKEFWLQKE-AALEQKISQLRDESAALNMKRASLEERLKLLEA 225 (475)
Q Consensus 148 QkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q-Lq~EI~~~~qEl-a~L~peiekL~~Ee~~LkqkLasLEeKl~~Lka 225 (475)
+....+...|..|+..+....+++......|.. +...+......+ ..+......+......|..++..++..+..-+.
T Consensus 34 ~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~ 113 (247)
T PF06705_consen 34 QRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKE 113 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777776665555443 333333333333 344445555555555555566666555554444
Q ss_pred hhhh
Q 011909 226 DKDS 229 (475)
Q Consensus 226 ERD~ 229 (475)
.|..
T Consensus 114 ~r~~ 117 (247)
T PF06705_consen 114 ERPQ 117 (247)
T ss_pred HhhH
Confidence 4443
No 287
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.20 E-value=63 Score=31.21 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909 193 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 229 (475)
Q Consensus 193 a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~ 229 (475)
..+...+.+|..+...+..++..++.++..++.+|..
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445555556666666666666666666666665555
No 288
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=74.08 E-value=7.4 Score=40.90 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 142 QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 142 d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
|+.........+|..+..|...+.....+-..+...|..+...+.+....+..|...+..++...+.+.-.+..+...+.
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls 108 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLS 108 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhh
Confidence 44445555666666666666666666666555555555555555555555555555555555555554444444432222
Q ss_pred HHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 222 LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 222 ~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
.....|+.+...+..+..+|..|..+....--.|..|..++..+.+....
T Consensus 109 --------------~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 109 --------------DHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSSS 158 (326)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred --------------hhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCCC
Confidence 33346666666666666666666666677777777777777777776544
No 289
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=73.50 E-value=67 Score=31.05 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=8.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhh
Q 011909 143 NDLRMQKEATLEETIKQLRNQ 163 (475)
Q Consensus 143 ~~~~LQkkA~lE~kIKdLe~~ 163 (475)
|...+.....++.+++.|+..
T Consensus 105 R~~~l~~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKE 125 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 290
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.36 E-value=86 Score=29.80 Aligned_cols=114 Identities=20% Similarity=0.167 Sum_probs=64.3
Q ss_pred HHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011909 93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK----VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 168 (475)
Q Consensus 93 ti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~k----l~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~ 168 (475)
.+--+-..|..|--....|...+.+|..+...-+.. ...+..--..++.++.++...++.++...+.|.....+..
T Consensus 37 ~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~ 116 (158)
T PF09744_consen 37 LLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLS 116 (158)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334444566666666777777777777665533222 2222222345666666666666777666666665443322
Q ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 169 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 169 Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
.. ...+....+.+..++..+......+.+++...=.+.
T Consensus 117 ~q--------------~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~ 154 (158)
T PF09744_consen 117 DQ--------------SSRLEEREAELKKEYNRLHERERELLRKLKEHVERQ 154 (158)
T ss_pred hh--------------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222333445566777777777777766666554443
No 291
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=73.19 E-value=1.2e+02 Score=31.56 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=62.7
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhH
Q 011909 233 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGAL 311 (475)
Q Consensus 233 kEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~ 311 (475)
+++ .++..+......+...+..+...+.....+...+..|+.+++....+...|+.+.. .....++++..+
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~--------~~~~kl~rA~~L 285 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIE--------ETERKLERAEKL 285 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhccHHHH
Confidence 444 45555555555555555566665556666666666666666555555555444443 334557777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 011909 312 IDKLITENIELVEKVNDLSVKLDRQSVAAGLSSA 345 (475)
Q Consensus 312 vekL~~enq~LeEe~neL~~~l~~~~~~~~~ss~ 345 (475)
+.-|..|+.+-.+.+..|..++...-.+.=+++|
T Consensus 286 i~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa 319 (344)
T PF12777_consen 286 ISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAA 319 (344)
T ss_dssp HHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888777777777777776665555445444444
No 292
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.98 E-value=44 Score=36.57 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=30.3
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 281 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqs 281 (475)
.+.........++..+...+..++..+..+.+++..|+.+|..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555666666666666667777777777777777777666665544
No 293
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.94 E-value=58 Score=31.45 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=34.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011909 249 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVN 327 (475)
Q Consensus 249 ksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~n 327 (475)
..+..++..|+.....|..++..++.+.+....+... .+..+.......++.|...|++|...+.
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e--------------~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE--------------LRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555555544322222 2223334445566677777777776543
No 294
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=72.81 E-value=57 Score=32.67 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011909 247 DITQLRMQVVELEESRNNLLQENRQLKEN 275 (475)
Q Consensus 247 EiksLqeEVkeLEesr~eL~kEIqqLReq 275 (475)
....|+++..++..+-..+.++.+.|+++
T Consensus 180 ~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 180 KVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 295
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.56 E-value=39 Score=36.99 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909 188 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 229 (475)
Q Consensus 188 ~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~ 229 (475)
|..-+..+..++..+..+...+.+++..+++++..|+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445555555555555555555555555555554444
No 296
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.51 E-value=44 Score=34.76 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 260 ESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 260 esr~eL~kEIqqLReqLdelqseiqs 285 (475)
-+..+..+||++||.-++-.++.+..
T Consensus 117 LALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 117 LALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 34455678888888888877777665
No 297
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=72.41 E-value=1.3e+02 Score=32.01 Aligned_cols=79 Identities=9% Similarity=0.096 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909 115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 193 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla 193 (475)
-.++..-++.+...++.+......+-.++.......+.++.+.+.....+....+.-+.+-++|.+++.+|+.+...++
T Consensus 247 ~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mt 325 (359)
T PF10498_consen 247 QQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMT 325 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333334444444444444444455555555555555555555555555544444444444444444444444444443
No 298
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=71.85 E-value=1.2e+02 Score=30.87 Aligned_cols=128 Identities=13% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 79 QHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK 158 (475)
Q Consensus 79 ~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIK 158 (475)
+.|.+.+. +|.+=+.. ....+..|.+++..+...+..++........++.+...+.+.....+..+.
T Consensus 169 ~Kg~ka~e--vL~~fl~~-----------~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le 235 (297)
T PF02841_consen 169 GKGVKAEE--VLQEFLQS-----------KESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLE 235 (297)
T ss_dssp ---TTHHH--HHHHHHHH-----------CHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHH--HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHH-hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 159 QLRNQNDLHIQR-EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 224 (475)
Q Consensus 159 dLe~~~~s~~Qk-ea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lk 224 (475)
+-......+... ...++..-.++..+.+......-....++ ....+..+...++.+|+.|+
T Consensus 236 ~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~~-----l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 236 QQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQEEL-----LKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcC
No 299
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=71.51 E-value=1.1e+02 Score=33.27 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=45.3
Q ss_pred HHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHhhhhhhh
Q 011909 222 LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN-LLQENRQLKENVSSLRSQLSSDE 287 (475)
Q Consensus 222 ~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~e-L~kEIqqLReqLdelqseiqsLE 287 (475)
.|+.||...-+-|--++..+..|..++..|+.++...|+...= -.....++.+-++.++.++..||
T Consensus 252 ~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 252 ALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555544455567777888888888888888777764442 23345566677888888888877
No 300
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=71.41 E-value=1.3e+02 Score=30.96 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 246 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 246 ~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
..+..+.+++..-.+.+..+..+|..|+..+..++.....
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444555555555555555555555555555555554443
No 301
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.40 E-value=1.7e+02 Score=32.38 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=15.9
Q ss_pred cCcceecCCCCCCCCCccCCcc
Q 011909 23 TDDVAVGADPNHLINGQKDDVR 44 (475)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~ 44 (475)
+.+++|+....|+..++..++.
T Consensus 104 n~~~svg~es~hn~se~~tD~e 125 (502)
T KOG0982|consen 104 NSNISVGKESMHNLSEQLTDNE 125 (502)
T ss_pred ccccccccccccccccCCCCCc
Confidence 3477888877787777776664
No 302
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.20 E-value=47 Score=26.96 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=31.2
Q ss_pred HHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 159 QLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 213 (475)
Q Consensus 159 dLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL 213 (475)
+|++..++-.+....+.++|..++..+-....+|-....+...|..+...|+..+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666655555555444444444444444433
No 303
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=71.17 E-value=86 Score=28.88 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=5.0
Q ss_pred HHHHHhhhhhhhh
Q 011909 276 VSSLRSQLSSDES 288 (475)
Q Consensus 276 LdelqseiqsLE~ 288 (475)
+...+.++..|+.
T Consensus 100 ~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 100 RKKYKERLKELGE 112 (136)
T ss_pred HHHHHHHHHHcCC
Confidence 3333333433333
No 304
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=70.78 E-value=1.1e+02 Score=30.18 Aligned_cols=178 Identities=15% Similarity=0.240 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhhcchhhh-hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 87 MAILEETVKHLRNERESH-IQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 87 ~~~~eeti~~l~~e~~~~-~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
++.+.+++..+.....-. -++....+..++.+.+.+..++..+..--..+... ...+| ..++..|..+.+.+.
T Consensus 7 L~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~----~~~lq--~~~e~~i~~~~~~v~ 80 (247)
T PF06705_consen 7 LASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVES----NKKLQ--SKFEEQINNMQERVE 80 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHHHHHHHHH
Confidence 445666666666555333 34555666667777777776665554422222211 11222 255666666666554
Q ss_pred HHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHH----HHhhhhhhhhhhchHHH
Q 011909 166 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA-LNMKRASLEERLKLL----EADKDSWTQMESVSKET 240 (475)
Q Consensus 166 s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~-LkqkLasLEeKl~~L----kaERD~WLkkEIsLke~ 240 (475)
... .....+++..++....++..|...+..-...-.. +.....++...+..| ..||..|..+|-.+-+.
T Consensus 81 ~~~------~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~kr 154 (247)
T PF06705_consen 81 NQI------SEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKR 154 (247)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2233333344444333433333333322222111 222222333344433 78888888888544444
Q ss_pred HhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 241 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 282 (475)
Q Consensus 241 ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse 282 (475)
+..+ ...+...+. .++......+..|+..++.+...
T Consensus 155 l~e~---~~~l~~~i~---~Ek~~Re~~~~~l~~~le~~~~~ 190 (247)
T PF06705_consen 155 LEEE---ENRLQEKIE---KEKNTRESKLSELRSELEEVKRR 190 (247)
T ss_pred HHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 333333332 34444555555555555555433
No 305
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=70.73 E-value=23 Score=30.61 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=11.4
Q ss_pred HHhhhHHHHHHHHHHHHHhHH
Q 011909 240 TIAGLSVDITQLRMQVVELEE 260 (475)
Q Consensus 240 ~ISsl~~EiksLqeEVkeLEe 260 (475)
.+++...++..|++++..+.+
T Consensus 45 evtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544
No 306
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=70.62 E-value=1.2e+02 Score=30.29 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 011909 129 VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQ 197 (475)
Q Consensus 129 l~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~p 197 (475)
+..+...+..|..+.+.+..+....-.+.-.+....+.-.++-..|...|..+...|.....+...+.+
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 333333344444444444444444444444444444444444444555555555555554444444433
No 307
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=70.61 E-value=1.8e+02 Score=32.36 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=13.6
Q ss_pred CccCCCCCcCCCchhHHHHHHhh
Q 011909 440 AVPLTDAPLIGAPFRLVSFVAKY 462 (475)
Q Consensus 440 ~vp~~dap~igapfrlisfva~y 462 (475)
.+.|.|-|.-|-..+..-.|+++
T Consensus 464 ~~lilDEp~~gld~~~~~~~~~~ 486 (563)
T TIGR00634 464 TTLIFDEVDVGVSGETAQAIAKK 486 (563)
T ss_pred CEEEEECCCCCCCHHHHHHHHHH
Confidence 56677777777665544444443
No 308
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=70.42 E-value=42 Score=33.11 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=31.5
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 273 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLR 273 (475)
.....+.+...++..+..||..|+.-......++++|+
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456788888999999999999999988888888875
No 309
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.19 E-value=1.5e+02 Score=34.09 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=14.6
Q ss_pred hhhhchHHHHHHHhHHHHHHHHH
Q 011909 297 EQKDFSTQIEAAGALIDKLITEN 319 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL~~en 319 (475)
+-.+|.++.+........|.+..
T Consensus 371 ~~~~L~R~~~~~~~lY~~lL~r~ 393 (726)
T PRK09841 371 EVLRLSRDVEAGRAVYLQLLNRQ 393 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777666665533
No 310
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=70.17 E-value=18 Score=32.19 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=33.7
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 281 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqs 281 (475)
.++.+|..+..++..|+.++..|-++...|.-|++.||+.|.....
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666777777777777777777777777777777777777776644
No 311
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.96 E-value=1.4e+02 Score=30.91 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH-HH-hhhhHHHHHhHHHHHHHHHHHHHHHH-------HHHHHH
Q 011909 132 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI-QR-EGGLEMNIANLQSEKEFWLQKEAALE-------QKISQL 202 (475)
Q Consensus 132 L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~-Qk-ea~Lee~I~qLq~EI~~~~qEla~L~-------peiekL 202 (475)
......-++.+...+-++....|..+.+|++.+..-- .. -......+..|+.++.....+++.+. |++..+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l 247 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSL 247 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHH
Confidence 4566677888888888888888888888888764421 11 11233445555555555555555543 444444
Q ss_pred HHHHHHHHHHHH
Q 011909 203 RDESAALNMKRA 214 (475)
Q Consensus 203 ~~Ee~~LkqkLa 214 (475)
+.+.+.+..++.
T Consensus 248 ~~~i~~l~~~i~ 259 (362)
T TIGR01010 248 QARIKSLRKQID 259 (362)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 312
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.87 E-value=1.1e+02 Score=35.66 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=9.0
Q ss_pred HHHHHHhHHHHHHHHHHhhhhh
Q 011909 209 LNMKRASLEERLKLLEADKDSW 230 (475)
Q Consensus 209 LkqkLasLEeKl~~LkaERD~W 230 (475)
+......++.++..|...|+.+
T Consensus 546 ~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 546 AEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443
No 313
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.63 E-value=1e+02 Score=31.44 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=24.1
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 281 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqs 281 (475)
.++..+...+..++.|..+...|++.+.-+..+.-.|+.+++++.-
T Consensus 160 ele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 160 ELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 3333333444444445555555555555566666666666665533
No 314
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.49 E-value=2.1e+02 Score=32.71 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=23.5
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 302 STQIEAAGALIDKLITENIELVEKVNDLSV 331 (475)
Q Consensus 302 s~E~E~l~s~vekL~~enq~LeEe~neL~~ 331 (475)
..|.-.+++.+.+|.-.+++...+|+....
T Consensus 708 ~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~ 737 (741)
T KOG4460|consen 708 AYQRKCIQSILKELGEHIREMVKQVKDIRN 737 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788899999988888888887765
No 315
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=69.37 E-value=2.6e+02 Score=33.73 Aligned_cols=8 Identities=13% Similarity=0.339 Sum_probs=3.3
Q ss_pred eecCCCCC
Q 011909 27 AVGADPNH 34 (475)
Q Consensus 27 ~~~~~~~~ 34 (475)
.|-|.+.|
T Consensus 507 PVCGS~~H 514 (1047)
T PRK10246 507 PLCGSTSH 514 (1047)
T ss_pred CCCCcccC
Confidence 34444444
No 316
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.31 E-value=2e+02 Score=32.44 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 315 LITENIELVEKVNDLSVKLDRQSVA 339 (475)
Q Consensus 315 L~~enq~LeEe~neL~~~l~~~~~~ 339 (475)
..+....+-+-+.+|.++|..-..+
T Consensus 394 f~a~q~K~a~tikeL~~El~~yrr~ 418 (613)
T KOG0992|consen 394 FTAKQEKHAETIKELEIELEEYRRA 418 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555667777777655544
No 317
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=69.17 E-value=18 Score=31.21 Aligned_cols=79 Identities=18% Similarity=0.142 Sum_probs=46.1
Q ss_pred HhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh-hhhhhhchHHHHHHHhHHHHHHHHH
Q 011909 241 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA-TSEQKDFSTQIEAAGALIDKLITEN 319 (475)
Q Consensus 241 ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e-~eEn~~Ls~E~E~l~s~vekL~~en 319 (475)
|.++..-.....--..-+......|.+||+-|+++++.. +. ++. +.||-+|.-|+.++.++.+ .-+.
T Consensus 5 I~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~n----Pe------vtr~A~EN~rL~ee~rrl~~f~~--~ger 72 (86)
T PF12711_consen 5 IKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHN----PE------VTRFAMENIRLREELRRLQSFYV--EGER 72 (86)
T ss_pred HHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhC----HH------HHHHHHHHHHHHHHHHHHHHHHH--hhHH
Confidence 333333333333333445556678888888888888743 11 111 3588999999988888873 2223
Q ss_pred HHHHHHHHHHHH
Q 011909 320 IELVEKVNDLSV 331 (475)
Q Consensus 320 q~LeEe~neL~~ 331 (475)
.-|-.++.+|..
T Consensus 73 E~l~~eis~L~~ 84 (86)
T PF12711_consen 73 EMLLQEISELRD 84 (86)
T ss_pred HHHHHHHHHHHh
Confidence 334445666544
No 318
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.00 E-value=1.7e+02 Score=31.83 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 011909 205 ESAALNMKRASLEERLKLL 223 (475)
Q Consensus 205 Ee~~LkqkLasLEeKl~~L 223 (475)
|-..|+|.|+++|+|+.=+
T Consensus 277 Ei~~LKqeLa~~EEK~~Yq 295 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMAYQ 295 (395)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3444556666666666533
No 319
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=68.20 E-value=1.4e+02 Score=29.98 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=30.4
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
+++..+..+...+..+...+..|+.....|...|..++.+...+..+...
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666555444333
No 320
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.08 E-value=43 Score=34.95 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 118 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 118 Lq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
.++.+.....++..+...+..|+.+++...+.+..++..+...+.
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444444444444444444444443333
No 321
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.04 E-value=54 Score=33.78 Aligned_cols=83 Identities=17% Similarity=0.334 Sum_probs=44.4
Q ss_pred ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---chhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 59 DADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRN---ERESHIQKEATLEGTVQQLQNECDLYKEKVATLEET 135 (475)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eeti~~l~~---e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~et 135 (475)
|-|++.|-| +..-.+--=++. -++|.|..|+. ++|-.|-. -.+.|.+|... ..+..+++.++.+
T Consensus 208 NG~~f~P~~-D~~~~dh~V~i~--------~lkeeia~Lkk~L~qkdq~ile---KdkqisnLKad-~e~~~~~ek~Hke 274 (305)
T KOG3990|consen 208 NGDGFPPFG-DRDPGDHMVKIQ--------KLKEEIARLKKLLHQKDQLILE---KDKQISNLKAD-KEYQKELEKKHKE 274 (305)
T ss_pred CCCcCCCCC-CCCCcchHHHHH--------HHHHHHHHHHHHHhhhHHHHHh---hhhhhhccCcc-hhHHHHHHHHHHH
Confidence 567777755 333222222333 45566666653 33322211 12445555554 2333556666666
Q ss_pred -HHHHHHHHHHHHHHHHhHH
Q 011909 136 -IQQLQRQNDLRMQKEATLE 154 (475)
Q Consensus 136 -ikQLe~d~~~~LQkkA~lE 154 (475)
..||.....+.++.++.|.
T Consensus 275 ~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 275 RVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 4888888888888777664
No 322
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.96 E-value=2.2e+02 Score=32.41 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011909 214 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 293 (475)
Q Consensus 214 asLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~ 293 (475)
-.|-++++.|+++--.-.-+-+++++.-+++...+-.+..++..++=...+..+++-.+..+|..+...... |.+
T Consensus 341 kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd-----ar~ 415 (654)
T KOG4809|consen 341 KDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD-----ARM 415 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----hhc
Confidence 334444444443222212244588889999999999999999999999888888888888888876544332 111
Q ss_pred hhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 294 ATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 294 e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
- -+--++..++|...+.+.++..--+.++.++=+|-.++
T Consensus 416 ~-pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkev 454 (654)
T KOG4809|consen 416 N-PEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEV 454 (654)
T ss_pred C-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12233444555555555555444444444444443333
No 323
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=67.76 E-value=66 Score=30.88 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=5.4
Q ss_pred HHHHHHHHhhh
Q 011909 88 AILEETVKHLR 98 (475)
Q Consensus 88 ~~~eeti~~l~ 98 (475)
+.|+|-=++|.
T Consensus 31 ~AFeEvg~~L~ 41 (161)
T TIGR02894 31 SAFEEVGRALN 41 (161)
T ss_pred HHHHHHHHHHc
Confidence 34555555553
No 324
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.68 E-value=1.6e+02 Score=30.74 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 312 IDKLITENIELVEKVNDLSVKLDRQSVA 339 (475)
Q Consensus 312 vekL~~enq~LeEe~neL~~~l~~~~~~ 339 (475)
|.||..++..|-+.|..|..+|++....
T Consensus 221 LkKl~~eke~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999654433
No 325
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=66.42 E-value=1.3e+02 Score=35.27 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=11.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhhhh
Q 011909 207 AALNMKRASLEERLKLLEADKDSWTQ 232 (475)
Q Consensus 207 ~~LkqkLasLEeKl~~LkaERD~WLk 232 (475)
..+......++.++..|+.+|+.|+.
T Consensus 539 ~e~~~~~~~l~~~~~~l~~~~~~~~~ 564 (771)
T TIGR01069 539 KEQEKLKKELEQEMEELKERERNKKL 564 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444455555443
No 326
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=66.39 E-value=1.2e+02 Score=34.70 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH---------------------
Q 011909 135 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA--------------------- 193 (475)
Q Consensus 135 tikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla--------------------- 193 (475)
++.-|.--.++++-++-.|-+.-.=|+.++.+..|....|+++|..|+.|+....++..
T Consensus 316 tKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkR 395 (832)
T KOG2077|consen 316 TKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKR 395 (832)
T ss_pred hhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhh
Confidence 33333334444444444444444444444444444444444444444444444444332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 194 ALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 194 ~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
=..-++....=+.++++.+|.+|++.++
T Consensus 396 FTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 396 FTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 2344566666777788888888877766
No 327
>PF14992 TMCO5: TMCO5 family
Probab=66.10 E-value=1.7e+02 Score=30.43 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011909 186 EFWLQKEAALEQKISQLRDESAALNMKRASLEE 218 (475)
Q Consensus 186 ~~~~qEla~L~peiekL~~Ee~~LkqkLasLEe 218 (475)
....+.+...+..++++...-..++.+++.++.
T Consensus 105 ~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 105 PQLSQSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred cchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666666665543
No 328
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=66.09 E-value=1.6e+02 Score=30.14 Aligned_cols=86 Identities=16% Similarity=0.079 Sum_probs=63.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHH
Q 011909 177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVV 256 (475)
Q Consensus 177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVk 256 (475)
.-++|+.-|..|..++..-+.-+.+.-.+.++|-+-|.+..++|..|+.|=+. ++-.-.++.+++.-+..+-.
T Consensus 72 ~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~-------vk~~qkrLdq~L~~I~sqQ~ 144 (254)
T KOG2196|consen 72 TYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVK-------VKLDQKRLDQELEFILSQQQ 144 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999998775444 33334444455555555555
Q ss_pred HhHHHHHHHHHHH
Q 011909 257 ELEESRNNLLQEN 269 (475)
Q Consensus 257 eLEesr~eL~kEI 269 (475)
+||.....++...
T Consensus 145 ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 145 ELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 329
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=65.94 E-value=1.4e+02 Score=29.18 Aligned_cols=7 Identities=57% Similarity=0.781 Sum_probs=2.8
Q ss_pred HHHHhhh
Q 011909 92 ETVKHLR 98 (475)
Q Consensus 92 eti~~l~ 98 (475)
|.|++|+
T Consensus 57 e~v~~l~ 63 (190)
T PF05266_consen 57 EKVKKLQ 63 (190)
T ss_pred HHHHHcc
Confidence 3344443
No 330
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.82 E-value=21 Score=27.17 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 180 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 180 qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
+|+...+.....-..|..++..|..++..|...+..+..++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666677777777666666666665443
No 331
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=65.63 E-value=1e+02 Score=28.73 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 204 (475)
Q Consensus 153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~ 204 (475)
.-|++|.+++..+...++ ..|..++.+|..+++..-.++..++++|++|..
T Consensus 66 ~sCR~KRv~Qk~eLE~~k-~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 66 QSCRVKRVQQKHELEKEK-AELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899998887765555 557777777777777777777777777777654
No 332
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.34 E-value=3.2e+02 Score=33.30 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=20.1
Q ss_pred HHHHHhhhcch-------------hhhhHHHhhH---HHHHHHHHHHHHHHHHH
Q 011909 91 EETVKHLRNER-------------ESHIQKEATL---EGTVQQLQNECDLYKEK 128 (475)
Q Consensus 91 eeti~~l~~e~-------------~~~~~~e~~l---~e~IkqLq~El~~lk~k 128 (475)
=+-|.+|+.+. +-++|.|.-+ .+.|++|..++..+...
T Consensus 410 ~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~ 463 (1041)
T KOG0243|consen 410 YEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQ 463 (1041)
T ss_pred HHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777665 5566665444 33444455555444433
No 333
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=64.13 E-value=2.4e+02 Score=31.32 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 107 KEATLEGTVQQLQNECDLYKEKVATLEET 135 (475)
Q Consensus 107 ~e~~l~e~IkqLq~El~~lk~kl~~L~et 135 (475)
+...+...|......+..+..++..+...
T Consensus 245 ~~~~~~~~i~~a~~~i~~L~~~l~~l~~~ 273 (582)
T PF09731_consen 245 SESDLNSLIAHAKERIDALQKELAELKEE 273 (582)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777766655443
No 334
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=63.58 E-value=1.5e+02 Score=28.91 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcch-----------hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 85 EAMAILEETVKHLRNER-----------ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATL 153 (475)
Q Consensus 85 ~~~~~~eeti~~l~~e~-----------~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~l 153 (475)
.|+.-|+|-|++|.=|. .--.+-...|+.....-+.........-..+.......+..+..+-+...-|
T Consensus 4 sALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyM 83 (178)
T PF14073_consen 4 SALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYM 83 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHhh
Q 011909 154 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL------EADK 227 (475)
Q Consensus 154 E~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L------kaER 227 (475)
--.+..-+.......++.+.++..-..-+.++.....++..|+.+|.+|..--..-.-|+..||.|+..= -.+|
T Consensus 84 Rkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdk 163 (178)
T PF14073_consen 84 RKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDK 163 (178)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhchHHHH
Q 011909 228 DSWTQMESVSKETI 241 (475)
Q Consensus 228 D~WLkkEIsLke~I 241 (475)
..-|+.+...++-+
T Consensus 164 AaqLQt~lE~nril 177 (178)
T PF14073_consen 164 AAQLQTGLETNRIL 177 (178)
T ss_pred HHHHHhhHHHhhhh
No 335
>PRK11519 tyrosine kinase; Provisional
Probab=63.44 E-value=2e+02 Score=33.11 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=12.9
Q ss_pred hhhhchHHHHHHHhHHHHHHH
Q 011909 297 EQKDFSTQIEAAGALIDKLIT 317 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL~~ 317 (475)
+-.+|.++.+......+.|.+
T Consensus 371 ~~~~L~Re~~~~~~lY~~lL~ 391 (719)
T PRK11519 371 EIVRLTRDVESGQQVYMQLLN 391 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666655
No 336
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=63.40 E-value=2.7e+02 Score=31.80 Aligned_cols=20 Identities=20% Similarity=0.136 Sum_probs=11.1
Q ss_pred cCCCCccCcceecCCCCCCC
Q 011909 17 KQTKTTTDDVAVGADPNHLI 36 (475)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (475)
|-+|++.+..+++.+-+-|-
T Consensus 242 kvsKtga~g~vleEaK~INk 261 (607)
T KOG0240|consen 242 KVSKTGAEGAVLEEAKNINK 261 (607)
T ss_pred ccCCCCccchhHHHHhhhhh
Confidence 45666666666665444433
No 337
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=63.20 E-value=1.5e+02 Score=28.68 Aligned_cols=8 Identities=63% Similarity=0.688 Sum_probs=4.6
Q ss_pred HHHHHHHH
Q 011909 77 ERQHLLQR 84 (475)
Q Consensus 77 ~~~~~~~~ 84 (475)
|||-||.|
T Consensus 81 ERGlLL~r 88 (189)
T PF10211_consen 81 ERGLLLLR 88 (189)
T ss_pred HHhHHHHH
Confidence 66666554
No 338
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.13 E-value=1.9e+02 Score=29.87 Aligned_cols=67 Identities=25% Similarity=0.238 Sum_probs=34.5
Q ss_pred HHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 157 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 157 IKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
|+.+........+.-..+...-+.|...|..+.+++.+...++..|+...=++......+|+++..|
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444445555555555555555555555555555555555666665555
No 339
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.08 E-value=1.9e+02 Score=29.86 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 81 LLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL 160 (475)
Q Consensus 81 ~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL 160 (475)
+|.+|+ ..=+.+-+.+.-..|+- +-|..++..|+.++.++...++.+..+..+-. .++.+|+.-
T Consensus 139 lL~kE~-~lr~~R~~a~~r~~e~~-~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~--------------~Le~KIekk 202 (267)
T PF10234_consen 139 LLGKEV-ELREERQRALARPLELN-EIEKALKEAIKAVQQQLQQTQQQLNNLASDEA--------------NLEAKIEKK 202 (267)
T ss_pred HHhchH-hHHHHHHHHHcCCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 455555 23333333444333321 24555556666665555555555555444444 444444444
Q ss_pred HhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 161 RNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 161 e~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
+...+-+. .+|..|++--=.+--|...++.++.+|=...-.-=..++-|+..+.
T Consensus 203 k~ELER~q-------KRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle 256 (267)
T PF10234_consen 203 KQELERNQ-------KRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLE 256 (267)
T ss_pred HHHHHHHH-------HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44433222 2355555555555555555665555555554444444444444444
No 340
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.65 E-value=92 Score=26.08 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=27.5
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
+...-+..+...+..+..++..++.....+.+++..++..|.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666677777776666667777666666554
No 341
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=62.55 E-value=1.4e+02 Score=28.22 Aligned_cols=35 Identities=29% Similarity=0.229 Sum_probs=15.0
Q ss_pred HHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011909 177 NIANLQSEKEFW-LQKEAALEQKISQLRDESAALNM 211 (475)
Q Consensus 177 ~I~qLq~EI~~~-~qEla~L~peiekL~~Ee~~Lkq 211 (475)
.+..|+.++... ..+.+.+..+.++|+.+-+.+++
T Consensus 59 ~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 59 AIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555432 22334444444444444444443
No 342
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.38 E-value=51 Score=26.82 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 118 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 118 Lq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
+++.|..++.+++.+..++.+|..-....-+.+..++..++.|.....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666555555555555555555554443
No 343
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=62.25 E-value=2.4e+02 Score=32.37 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhh
Q 011909 181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG 243 (475)
Q Consensus 181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISs 243 (475)
++.-+.....+++.++.++.. ...+...|+.....|...|+.|+..|+.-=-.++.
T Consensus 376 ~~~~~~~~~~~l~~le~~l~~-------~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~ 431 (656)
T PRK06975 376 AQASVHQLDSQFAQLDGKLAD-------AQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSAS 431 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 333333444444444444444 44445555666666778899999999843333333
No 344
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=62.17 E-value=1.2e+02 Score=33.24 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=44.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHH
Q 011909 176 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQV 255 (475)
Q Consensus 176 e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEV 255 (475)
.+++++..+-....+.+..++.+=..+......+.++-..+.++-.++..+...+..++|..+..+.+++.++.--+.+.
T Consensus 183 ~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~ql 262 (447)
T KOG2751|consen 183 KELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQL 262 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444555544455555555555555556666677777777777776555544
Q ss_pred HHh
Q 011909 256 VEL 258 (475)
Q Consensus 256 keL 258 (475)
..|
T Consensus 263 dkL 265 (447)
T KOG2751|consen 263 DKL 265 (447)
T ss_pred HHH
Confidence 443
No 345
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.06 E-value=28 Score=31.25 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=32.4
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.+..+|..+-.++..|+.++.++-++...|.-|++-||+.|+..
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777777777777777777777777777765
No 346
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.62 E-value=64 Score=27.66 Aligned_cols=41 Identities=27% Similarity=0.249 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011909 216 LEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVV 256 (475)
Q Consensus 216 LEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVk 256 (475)
++..+....+-++..+..+| .|+.....+..++..|+.++.
T Consensus 58 Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 58 LESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444666666666776 677666666666666666554
No 347
>PF13514 AAA_27: AAA domain
Probab=61.61 E-value=3.6e+02 Score=32.62 Aligned_cols=39 Identities=31% Similarity=0.412 Sum_probs=20.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 250 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 288 (475)
Q Consensus 250 sLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~ 288 (475)
.+..++..++.....+..++..+...+..++.++..++.
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444445555555555555555555555555555555444
No 348
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=61.40 E-value=1e+02 Score=26.39 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=10.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 250 QLRMQVVELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 250 sLqeEVkeLEesr~eL~kEIqqLReqL 276 (475)
.|..++..+......+..+...+..++
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 349
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.10 E-value=1.3e+02 Score=27.12 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.1
Q ss_pred HHHHHH
Q 011909 272 LKENVS 277 (475)
Q Consensus 272 LReqLd 277 (475)
++.++.
T Consensus 97 l~~~l~ 102 (121)
T PRK09343 97 LREKLK 102 (121)
T ss_pred HHHHHH
Confidence 333333
No 350
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.61 E-value=1.5e+02 Score=27.98 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=26.3
Q ss_pred HHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 011909 94 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVAT 131 (475)
Q Consensus 94 i~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~ 131 (475)
+++|+..-=..-|-|++..-...-|...++.....+..
T Consensus 8 v~~Le~~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vt 45 (177)
T PF07798_consen 8 VKRLEAAGFTEEQAEAIMKALREVLNDSLEKVAQDLVT 45 (177)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46676667777788888877777777777665555543
No 351
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.60 E-value=1.2e+02 Score=26.60 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 242 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 242 Ssl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
..+...+..+...+..|+.....+.+.+..++..|.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444443
No 352
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=60.37 E-value=1.6e+02 Score=27.99 Aligned_cols=118 Identities=23% Similarity=0.232 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 216 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL 216 (475)
-++..+...+.++.+.++..++-|+.-..++.-.-.. --..++=....+.|.+.-++..|.-+...+.++-..+
T Consensus 26 ~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~v------l~r~~L~allRkqAVvRrqi~eL~lq~~~i~ekR~~l 99 (147)
T PF02090_consen 26 LQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGCV------LSREELYALLRKQAVVRRQIQELNLQEQQIQEKRRQL 99 (147)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHcccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677778888888888888776665443111 1234566677888999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhchHHHHhhhH--HHHHHHHHHHHHhHH
Q 011909 217 EERLKLLEADKDSWTQMESVSKETIAGLS--VDITQLRMQVVELEE 260 (475)
Q Consensus 217 EeKl~~LkaERD~WLkkEIsLke~ISsl~--~EiksLqeEVkeLEe 260 (475)
+.++..++..|.-|+.++=.-..-+.... .-+..|+.+..+.|+
T Consensus 100 ~ke~~~~~~~r~~wlrK~dkY~rw~~~~kr~~r~~~l~qeE~E~EE 145 (147)
T PF02090_consen 100 EKEKQEQQEQRKHWLRKEDKYDRWQQRQKRLRRLQQLRQEETEQEE 145 (147)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999864444333332 223355555555543
No 353
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.85 E-value=1.4e+02 Score=30.50 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=32.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011909 175 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 225 (475)
Q Consensus 175 ee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lka 225 (475)
+.+...++.++....-+.+.|...+..|..+...|+.++..|+.++..+..
T Consensus 162 e~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 162 EAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 334444555555555666667777777777777777777777776665533
No 354
>PRK00106 hypothetical protein; Provisional
Probab=59.57 E-value=3e+02 Score=31.06 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=7.7
Q ss_pred chhHHHHHHhhcccc
Q 011909 452 PFRLVSFVAKYVSGA 466 (475)
Q Consensus 452 pfrlisfva~yvsga 466 (475)
||=.|=|+|-++|++
T Consensus 430 ~~a~IV~~AD~lsa~ 444 (535)
T PRK00106 430 VIAVIVAAADALSSA 444 (535)
T ss_pred hHHHHHHHHHHhccC
Confidence 444555555555543
No 355
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=58.56 E-value=91 Score=26.73 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-hhhh
Q 011909 197 QKISQLRDESAALNMKRASLEERLKLLEAD-KDSW 230 (475)
Q Consensus 197 peiekL~~Ee~~LkqkLasLEeKl~~LkaE-RD~W 230 (475)
.-+..|..+...+.+.+..-++++..++++ +|.|
T Consensus 7 ~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~ 41 (90)
T PF02970_consen 7 GVVKRLLKEEASYEKEVEEQEARLEKMKAEGEDEY 41 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 345678888888888888888888888776 5666
No 356
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=58.41 E-value=12 Score=35.89 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=13.8
Q ss_pred HHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 158 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 213 (475)
Q Consensus 158 KdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL 213 (475)
.||+.......++.+.||.+| .|...|..+...|++|-..|++.+
T Consensus 3 eD~EsklN~AIERnalLE~EL-----------dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL-----------DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443 233344444444444444444444
No 357
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=58.34 E-value=23 Score=37.57 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=21.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 176 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 176 e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
.++..++..|......+..+...+..+......+..++..++...+
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444444444444444444444444444445555555555444
No 358
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=57.72 E-value=1.2e+02 Score=25.78 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=61.9
Q ss_pred HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 166 (475)
Q Consensus 90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s 166 (475)
+.|-+--++.|-|...+.=..+......++..+....+++.....++-+|+. .+.+-+...|..|..|+...+.
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~---~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQ---AHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667788888888888888888889999999999999999999988887 5677788899999999987664
No 359
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=57.72 E-value=1.1e+02 Score=32.55 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHH-HHHHHHH
Q 011909 190 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES-RNNLLQE 268 (475)
Q Consensus 190 qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEes-r~eL~kE 268 (475)
.+-..+..++.+|++....+++++.++..-+..- ...|+.++..++.|...++.++.. ...-...
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C--------------~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~ 69 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKC--------------SSSISHQKKRLKELKKSLKRCKKSLSAEEREL 69 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccCCChhHHHH
Confidence 4557788888888888888888888875544422 224455555555555555555432 2233445
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 011909 269 NRQLKENVSSLRSQLSSDE 287 (475)
Q Consensus 269 IqqLReqLdelqseiqsLE 287 (475)
++++++.+.+.+..+..++
T Consensus 70 i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 70 IEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 5555555555555555433
No 360
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=57.54 E-value=3.1e+02 Score=30.59 Aligned_cols=8 Identities=50% Similarity=0.534 Sum_probs=3.0
Q ss_pred Hhhccccc
Q 011909 460 AKYVSGAD 467 (475)
Q Consensus 460 a~yvsgad 467 (475)
|..|.-||
T Consensus 411 a~IV~~AD 418 (514)
T TIGR03319 411 AVLVAAAD 418 (514)
T ss_pred HHHHHHHH
Confidence 33333333
No 361
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=57.50 E-value=3.3e+02 Score=30.92 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=52.3
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh---------------------
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA--------------------- 294 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e--------------------- 294 (475)
.+...+......+..+..+-....+...+|.+.-.+-|+.++.+++.+..+..-.--|.
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~ 458 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQD 458 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHH
Confidence 34455555555555555555555666666666666666666666666555443222221
Q ss_pred -hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 295 -TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 329 (475)
Q Consensus 295 -~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL 329 (475)
+.+-.+.-..+++++..++.-+---..|+++..++
T Consensus 459 l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ 494 (570)
T COG4477 459 LMKELSEVPINMEAVSALVDIATEDMNTLEDETEEV 494 (570)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22444455566777777766655555555555554
No 362
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=56.91 E-value=2.8e+02 Score=29.84 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=18.1
Q ss_pred hhhhchHHHHHHHhHHHHHHHHHHHHH
Q 011909 297 EQKDFSTQIEAAGALIDKLITENIELV 323 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL~~enq~Le 323 (475)
.-.+|.++.+...+..+.+.+--+++.
T Consensus 374 ~l~~L~Re~~~~r~~ye~lL~r~qe~~ 400 (458)
T COG3206 374 QLRELEREAEAARSLYETLLQRYQELS 400 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888777443333
No 363
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=56.79 E-value=83 Score=27.82 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 243 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 283 (475)
Q Consensus 243 sl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqsei 283 (475)
.....+.-+.+.+..|+.....+.+.+..++.++..+...+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 84 DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666666666554443
No 364
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=56.78 E-value=4.7e+02 Score=32.37 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011909 116 QQLQNECDLYKEKVATLE 133 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~ 133 (475)
+.|+.+|...+|.|+.|+
T Consensus 1066 ~eLReQIq~~KQ~LesLQ 1083 (1439)
T PF12252_consen 1066 SELREQIQSVKQDLESLQ 1083 (1439)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555556666555
No 365
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=56.64 E-value=1e+02 Score=30.23 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011909 128 KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 164 (475)
Q Consensus 128 kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~ 164 (475)
++..|...+..|......+-+.-..+|..|+.|.+..
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444455444444455555555666665543
No 366
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.18 E-value=94 Score=29.51 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=23.4
Q ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 169 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE 205 (475)
Q Consensus 169 Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~E 205 (475)
+......+++..|+.++.....+...|+.+.+.+..+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455666666777777666666666666666654
No 367
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=56.18 E-value=2.1e+02 Score=28.25 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 011909 191 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD 228 (475)
Q Consensus 191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD 228 (475)
.++..+-+--+|..++..+...++..+++...|+++-+
T Consensus 99 ~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~ 136 (192)
T PF11180_consen 99 RLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQ 136 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666666666666666655433
No 368
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=55.96 E-value=3.5e+02 Score=30.59 Aligned_cols=157 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh-----------------
Q 011909 120 NECDLYKEKVATLEETIQQLQRQNDLRM--QKEATLEETIKQLRNQNDLHIQREGGLEMNIAN----------------- 180 (475)
Q Consensus 120 ~El~~lk~kl~~L~etikQLe~d~~~~L--QkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q----------------- 180 (475)
...+.+.+.+....+.|.+|+.+.+-|+ ...+.+.+.-...+-..-...-...........
T Consensus 302 es~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l~~~~e~~se~s~~ 381 (518)
T PF10212_consen 302 ESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVLSEASEQQSEASSQ 381 (518)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhccccccccccccc
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 181 ------------------------------------LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 224 (475)
Q Consensus 181 ------------------------------------Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lk 224 (475)
+...|..+..++.....+-.....+...|..+|...+..+..+.
T Consensus 382 ~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ 461 (518)
T PF10212_consen 382 SVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLE 461 (518)
T ss_pred ccccccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909 225 ADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 287 (475)
Q Consensus 225 aERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE 287 (475)
.+=.. +...| .|++.+..- ...-|.....+.+++..|.++|...+.+|+.|.
T Consensus 462 eeL~~-a~~~i~~LqDEL~TT----------r~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 462 EELKE-ANQNISRLQDELETT----------RRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHH-HHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 369
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=55.94 E-value=1.4e+02 Score=26.08 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh----hhhhhhchHHHH
Q 011909 232 QMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA----TSEQKDFSTQIE 306 (475)
Q Consensus 232 kkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e----~eEn~~Ls~E~E 306 (475)
+.|+ .++..|.....++..+...+..-+.........+..-...++.+-..... ...-|+.. .........++.
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~-k~~rA~k~a~~e~k~~~~k~~ei~ 84 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA-KRERAEKRAEEEKKKKEEKEAEIK 84 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 307 AAGALIDKLITENIELVEKVNDLSV 331 (475)
Q Consensus 307 ~l~s~vekL~~enq~LeEe~neL~~ 331 (475)
.+...+..|......+++.+..+..
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 370
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=55.76 E-value=1.9e+02 Score=27.58 Aligned_cols=113 Identities=10% Similarity=0.080 Sum_probs=77.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHH
Q 011909 179 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVE 257 (475)
Q Consensus 179 ~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVke 257 (475)
.+|+..+...-..+......+.....+.....+.+......|..+-.....|.-.++ .+..+...+......+..++.-
T Consensus 18 ~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~ 97 (158)
T PF09486_consen 18 RRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAA 97 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666677777777777777777888888888877777777777776 7777777776666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909 258 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 291 (475)
Q Consensus 258 LEesr~eL~kEIqqLReqLdelqseiqsLE~Eea 291 (475)
|.........+|...+..|.....++.-+...+.
T Consensus 98 l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~ 131 (158)
T PF09486_consen 98 LRQALRAAEDEIAATRRAIARNDARIDVCRERID 131 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6666666666666666666666666655555443
No 371
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.15 E-value=1.4e+02 Score=25.79 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011909 121 ECDLYKEKVATLEETIQQLQRQN 143 (475)
Q Consensus 121 El~~lk~kl~~L~etikQLe~d~ 143 (475)
++..+...+..+...+.+|+.+.
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~ 29 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQL 29 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 372
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=54.69 E-value=56 Score=37.23 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=47.8
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHH
Q 011909 240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITEN 319 (475)
Q Consensus 240 ~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~en 319 (475)
.|..+.-...++..++.+||..+-.|..+|.+++.++++++..+..-.. |...|..++|++...++.+.+.|
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~--------eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQL--------ELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH--------HHHHHHhHHHHHHHHHHHHHhhc
Confidence 3444445556777788888888888888888888888888777665111 33456666666666655555433
No 373
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=54.58 E-value=79 Score=29.24 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909 197 QKISQLRDESAALNMKRASLEERLKLLEADKDS 229 (475)
Q Consensus 197 peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~ 229 (475)
-.|+++.+.+.++.+.++.....+..|+.+.+.
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~ 52 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEK 52 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888777777766665554
No 374
>PRK11546 zraP zinc resistance protein; Provisional
Probab=54.07 E-value=45 Score=31.37 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 217 EERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 284 (475)
Q Consensus 217 EeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiq 284 (475)
.+++..++.=++.|..+-..|...|-....++..|...-.-=+.....+.+||.+|+.+|.+.+-...
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556665545557888888888888877766666666788888888888888887655433
No 375
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.06 E-value=97 Score=29.40 Aligned_cols=9 Identities=33% Similarity=0.338 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 011909 268 ENRQLKENV 276 (475)
Q Consensus 268 EIqqLReqL 276 (475)
++..|+.|.
T Consensus 176 ~~~~LkkQ~ 184 (192)
T PF05529_consen 176 EIEALKKQS 184 (192)
T ss_pred HHHHHHHHH
Confidence 333333333
No 376
>PRK09343 prefoldin subunit beta; Provisional
Probab=54.05 E-value=1.7e+02 Score=26.34 Aligned_cols=103 Identities=12% Similarity=0.154 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh----hHHHHHhHHHHHHHHHHHHH
Q 011909 118 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG----LEMNIANLQSEKEFWLQKEA 193 (475)
Q Consensus 118 Lq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~----Lee~I~qLq~EI~~~~qEla 193 (475)
|..++...-.++..++..+..+...+..+-......+..+++|..--+...-.+.- ... .+..-+.....++.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~q---d~~e~~~~l~~r~E 81 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKV---DKTKVEKELKERKE 81 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhc---cHHHHHHHHHHHHH
Confidence 33444444444455555555555555555556666777777776654333222110 000 11122222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 194 ALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 194 ~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
.++.++..|.+....+..++..++..++.+
T Consensus 82 ~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 82 LLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777655
No 377
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=53.97 E-value=3.8e+02 Score=30.49 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=18.9
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 240 ~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.+.........|+.-+..++.....+..+..+.++.|..+
T Consensus 369 ~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~L 408 (570)
T COG4477 369 NIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSL 408 (570)
T ss_pred HhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333444555555555555555555554444444433
No 378
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=53.80 E-value=74 Score=34.28 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=41.9
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 209 LNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVD-ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 286 (475)
Q Consensus 209 LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~E-iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsL 286 (475)
+-++...+..+++.|+++|+. +.++| .++. .... ...|..++..+......+..++..+.+++...-..++++
T Consensus 35 ld~~~r~~~~~~~~l~~erN~-~sk~i~~~~~----~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNE-LSKQIGKAKG----QKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc----cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333444445555556666666 55666 2111 1112 445566666666666666666777777777666666665
Q ss_pred hh
Q 011909 287 ES 288 (475)
Q Consensus 287 E~ 288 (475)
=.
T Consensus 110 ~~ 111 (418)
T TIGR00414 110 PH 111 (418)
T ss_pred CC
Confidence 33
No 379
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=53.25 E-value=1.5e+02 Score=25.52 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=36.7
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909 172 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 222 (475)
Q Consensus 172 a~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~ 222 (475)
..++++|..|.......-++|.....+...|..-+..+..+|...-+.++.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666767777777777777777777777777777777777777666653
No 380
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=53.10 E-value=1.6e+02 Score=25.89 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=15.9
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 209 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~L 209 (475)
+++.+.-|+..+......+..|...+..+.++-..+
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 381
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.97 E-value=2.9e+02 Score=32.61 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=43.3
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 144 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 144 ~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
-.+...++..+..|.+++...+....+....+..+.-++.- .....+.+....+...+..+.++..+...+...+
T Consensus 537 ~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~-----~~~~~i~~l~~el~eq~~~~~~~~~~~~~~~~~~ 611 (809)
T KOG0247|consen 537 QMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILEST-----EYEEEIEALDQELEEQKMELQQKFSEKKKAMAKV 611 (809)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc-----hhhhhhHHHHHHHHhhhHHHHhhccchhHHHhhh
Confidence 55556666666666666666665555555555554444433 2234555566666667777766666665555444
No 382
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=52.64 E-value=1.1e+02 Score=25.17 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011909 126 KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 167 (475)
Q Consensus 126 k~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~ 167 (475)
..++..|-..-.+|+.++..+.+..+.+...-..|.+.++..
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444333
No 383
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.31 E-value=61 Score=28.88 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=19.8
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 240 ~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
.+..+...+..|..++..|......+.+|+..|+-.-..++.++..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433344333333
No 384
>PLN02678 seryl-tRNA synthetase
Probab=52.25 E-value=97 Score=34.03 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909 248 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 291 (475)
Q Consensus 248 iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eea 291 (475)
...|..++..|.++...+..++..+..++..+-..++++=...+
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~V 116 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSV 116 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 34455556666666666666666666677777777776544443
No 385
>PF13945 NST1: Salt tolerance down-regulator
Probab=51.95 E-value=1e+02 Score=30.24 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=8.3
Q ss_pred hhhHHHhhHHHH
Q 011909 103 SHIQKEATLEGT 114 (475)
Q Consensus 103 ~~~~~e~~l~e~ 114 (475)
+.|-|+++|.++
T Consensus 123 VkIEKe~VLkkm 134 (190)
T PF13945_consen 123 VKIEKEAVLKKM 134 (190)
T ss_pred HHhhHHHHHHHH
Confidence 567777777766
No 386
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.19 E-value=1.7e+02 Score=27.00 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 011909 194 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL 266 (475)
Q Consensus 194 ~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~ 266 (475)
.|+.-++.|..-...|.++++.+..++....+==.. ++.++ .+...++....++..+..-|..|+.....+.
T Consensus 51 ql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~-i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 51 QLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQ-IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
No 387
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=51.14 E-value=4.8e+02 Score=30.83 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhh---hhhhhchHHHHHHH
Q 011909 273 KENVSSLRSQLSSDESKKLQHAT---SEQKDFSTQIEAAG 309 (475)
Q Consensus 273 ReqLdelqseiqsLE~Eeal~e~---eEn~~Ls~E~E~l~ 309 (475)
+.+|+.+..++.. +-+.++.-. +--+.|..|+..++
T Consensus 648 k~KIe~L~~eIkk-kIe~av~ss~LK~k~E~Lk~Evaka~ 686 (762)
T PLN03229 648 QEKIESLNEEINK-KIERVIRSSDLKSKIELLKLEVAKAS 686 (762)
T ss_pred HHHHHHHHHHHHH-HHHHHhcchhHHHHHHHHHHHHHhcC
Confidence 4444444444444 333333321 13334555555554
No 388
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=50.84 E-value=1.7e+02 Score=28.10 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 191 KEAALEQKISQLRDESAALNMKRASL 216 (475)
Q Consensus 191 Ela~L~peiekL~~Ee~~LkqkLasL 216 (475)
.+....|....+..++..++..+..|
T Consensus 91 ~l~~~~~~~~~~~~e~~~l~~e~~~l 116 (161)
T TIGR02894 91 NLKTTNPSDQALQKENERLKNQNESL 116 (161)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443333333
No 389
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=50.67 E-value=1.4e+02 Score=24.62 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 244 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 244 l~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
...-+..|...+..+......+..++...+..+-....+...
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555554444444444333
No 390
>PF14282 FlxA: FlxA-like protein
Probab=50.63 E-value=61 Score=28.50 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=11.0
Q ss_pred HHHhhhHHHHHHHHHHHHHhHH
Q 011909 239 ETIAGLSVDITQLRMQVVELEE 260 (475)
Q Consensus 239 e~ISsl~~EiksLqeEVkeLEe 260 (475)
..|..+...|..|..++..|..
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555555555555444
No 391
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=50.27 E-value=3.7e+02 Score=29.26 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=29.6
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 011909 301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSA 345 (475)
Q Consensus 301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~~~~~ss~ 345 (475)
|+.++++...--.-|..++.-|.+-|.+|.+-++|.+-...+-+.
T Consensus 257 LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeqLk~p 301 (561)
T KOG1103|consen 257 LRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQLKGP 301 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccccccCc
Confidence 444444444444455667778888999998888887766555443
No 392
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=50.16 E-value=2.5e+02 Score=27.21 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHH
Q 011909 182 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES 261 (475)
Q Consensus 182 q~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEes 261 (475)
+..++.....--..-.-+.+|+.....++++...++.++ ..+..+-..... ...-..+..++..+...+.+=...
T Consensus 1 rrrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l----~~~~~l~~~~~~-~~~~~e~s~dLe~~l~rLeEEqqR 75 (182)
T PF15035_consen 1 RRRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQL----SASQVLESPSQR-RRSEEEHSPDLEEALIRLEEEQQR 75 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccCcCccccc-ccccccCcccHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 262 RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVND 328 (475)
Q Consensus 262 r~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~ne 328 (475)
..+|..-+..||++++.....-..|..+.. +|+.+.+++...++.--..-+.-++.++.
T Consensus 76 ~~~L~qvN~lLReQLEq~~~~N~~L~~dl~--------klt~~~~~l~~eL~~ke~~~~~ee~~~~~ 134 (182)
T PF15035_consen 76 SEELAQVNALLREQLEQARKANEALQEDLQ--------KLTQDWERLRDELEQKEAEWREEEENFNQ 134 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 393
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=49.65 E-value=55 Score=33.47 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhh---------hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 265 LLQENRQLKENVSSLRSQLSSDESKKLQHA---------TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 265 L~kEIqqLReqLdelqseiqsLE~Eeal~e---------~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
|.-|-..+|.+|.....---.-+...+.++ ++||++|..+.++|...-+.|..+|..|.-++-.|...|
T Consensus 64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
No 394
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=49.61 E-value=1.2e+02 Score=25.36 Aligned_cols=28 Identities=36% Similarity=0.379 Sum_probs=12.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 257 ELEESRNNLLQENRQLKENVSSLRSQLS 284 (475)
Q Consensus 257 eLEesr~eL~kEIqqLReqLdelqseiq 284 (475)
+.+..+..|.+|+=.|+=+|.-+..++.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 395
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=49.00 E-value=2e+02 Score=25.78 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011909 195 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 274 (475)
Q Consensus 195 L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLRe 274 (475)
|-.+|.+|+..+..|+...-.=++ +-+.|+..|......+..+..++..|.=....|.+.+..|+.
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~--------------k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQA--------------KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888665543322 223566677777778888888888888888888888888888
Q ss_pred HHHHH
Q 011909 275 NVSSL 279 (475)
Q Consensus 275 qLdel 279 (475)
.++..
T Consensus 69 El~~~ 73 (102)
T PF10205_consen 69 ELEES 73 (102)
T ss_pred HHHHh
Confidence 88754
No 396
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=48.98 E-value=2.7e+02 Score=27.31 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=84.6
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh
Q 011909 102 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQL--------QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG 173 (475)
Q Consensus 102 ~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQL--------e~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~ 173 (475)
..|+++-+-.++.+..-+..|..++.+...|-..+=++ ..-.+.++.....=+..++..+.
T Consensus 21 ~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~----------- 89 (204)
T PF10368_consen 21 YDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKE----------- 89 (204)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 44566666677788888888888887777766666222 22222222222222222222222
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQL-----RDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI 248 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL-----~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~Ei 248 (475)
-|+....+...+.+-+.++ +.+-..|...+...-..-..|......||..|-.|-..+..-....
T Consensus 90 ----------ai~~a~~e~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~ 159 (204)
T PF10368_consen 90 ----------AIEKAKEEFKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQ 159 (204)
T ss_dssp ----------HHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--H
T ss_pred ----------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCH
Confidence 2222233333333322222 2233333333334444445557777888888888888888888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 249 TQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 249 ksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
..|..+|..+...-..+.+.+......+...
T Consensus 160 ~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~y 190 (204)
T PF10368_consen 160 KQLDEKIKAINQSYKEVNKQKEKFNEYTKKY 190 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777777766665555544
No 397
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=48.47 E-value=1.1e+02 Score=25.77 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQR 141 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~ 141 (475)
..|...|+.|++|+..++-....|....++++.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~ 45 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDP 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 346778888888888888888777777766665
No 398
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.39 E-value=1.7e+02 Score=25.35 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh--------------hhhhhhhhchHHHH----------
Q 011909 186 EFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK--------------DSWTQMESVSKETI---------- 241 (475)
Q Consensus 186 ~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaER--------------D~WLkkEIsLke~I---------- 241 (475)
.........+..++..+......+...+..++.-+..|..=. ..|+...|.-...+
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Q ss_pred -hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 242 -AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 286 (475)
Q Consensus 242 -Ssl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsL 286 (475)
......+.-+.+.+..++.....+.+.+..++.++..++..++.+
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 399
>PRK02119 hypothetical protein; Provisional
Probab=48.30 E-value=1.3e+02 Score=24.88 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL 160 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL 160 (475)
..+.+.|..++.+++..+.++..|..-....-+....++..++.|
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444444444444444444
No 400
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.95 E-value=2.7e+02 Score=29.66 Aligned_cols=49 Identities=29% Similarity=0.386 Sum_probs=36.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011909 106 QKEATLEGTVQQLQNECDLYK----EKVATLEETIQQLQRQNDLRMQKEATLE 154 (475)
Q Consensus 106 ~~e~~l~e~IkqLq~El~~lk----~kl~~L~etikQLe~d~~~~LQkkA~lE 154 (475)
+||+.|.+.=+.|-+..+.++ .+-..|+..+++|+.++..+.++++.++
T Consensus 352 ekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~rk~~~~ 404 (406)
T KOG3859|consen 352 EKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRRKTAAE 404 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367777777777777766444 5567778888888888888888887765
No 401
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=47.83 E-value=2.6e+02 Score=26.84 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011909 240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 289 (475)
Q Consensus 240 ~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~E 289 (475)
.+.+...+-+.|..-..+|+---.=..+++..+|.+|+....++..++..
T Consensus 57 ~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~ 106 (159)
T PF04949_consen 57 QLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQS 106 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444444444444444444445666666666666666665555543
No 402
>PRK02119 hypothetical protein; Provisional
Probab=47.77 E-value=90 Score=25.90 Aligned_cols=41 Identities=15% Similarity=0.027 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909 153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 193 (475)
Q Consensus 153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla 193 (475)
+|.+|-+|+..+.....--..|.+.+..-+.+|+.....+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444443333333344444444444444333333
No 403
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.62 E-value=4.4e+02 Score=29.35 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909 260 ESRNNLLQENRQLKENVSSLRSQLSSDESKKL 291 (475)
Q Consensus 260 esr~eL~kEIqqLReqLdelqseiqsLE~Eea 291 (475)
.....|...+..|+++=+++..++..+....+
T Consensus 410 qevkrLrq~nr~l~eqneelngtilTls~q~l 441 (502)
T KOG0982|consen 410 QEVKRLRQPNRILSEQNEELNGTILTLSTQFL 441 (502)
T ss_pred HHHHHhccccchhhhhhhhhhhhhhhHHHHHH
Confidence 33334444444444555555555555444443
No 404
>PF14992 TMCO5: TMCO5 family
Probab=47.44 E-value=3.5e+02 Score=28.21 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 136 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 215 (475)
Q Consensus 136 ikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLas 215 (475)
-.+|...+..+++++-..|..|-.|...+.-....-..- +..+..-.+... -+-.++.+..+|..++..+.+....
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~-e~e~~~~~~~e~---~l~~le~e~~~LE~~ne~l~~~~~e 88 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS-EEEDIISEERET---DLQELELETAKLEKENEHLSKSVQE 88 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch-hHHhhhhhchHH---HHHHHHhhhHHHhhhhHhhhhhhhh
Confidence 344555666666666666666666655544332221111 111111111111 1222334445566666666555566
Q ss_pred HHHHHH
Q 011909 216 LEERLK 221 (475)
Q Consensus 216 LEeKl~ 221 (475)
++.++.
T Consensus 89 lq~k~~ 94 (280)
T PF14992_consen 89 LQRKQD 94 (280)
T ss_pred hhhhhc
Confidence 655544
No 405
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=47.31 E-value=4.3e+02 Score=29.19 Aligned_cols=86 Identities=22% Similarity=0.314 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHH----HHHHHHhhhhHHHHHhhhhHH
Q 011909 109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQN--------DLRMQKEATLEE----TIKQLRNQNDLHIQREGGLEM 176 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~--------~~~LQkkA~lE~----kIKdLe~~~~s~~Qkea~Lee 176 (475)
..|++.|+.|++.++...-..+.++-..+-+++-. ..+-+..|.||. +|.+|+.. ++.
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRq----------HqR 363 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQ----------HQR 363 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHH----------HHH
Confidence 46888888888888876665555554443333211 112223333332 23333322 334
Q ss_pred HHHhHHHHHHHHHHHH-HHHHHHHHHHHH
Q 011909 177 NIANLQSEKEFWLQKE-AALEQKISQLRD 204 (475)
Q Consensus 177 ~I~qLq~EI~~~~qEl-a~L~peiekL~~ 204 (475)
+|..|+.+++-.+.++ +..-.-|+..++
T Consensus 364 ELekLreEKdrLLAEETAATiSAIEAMKn 392 (593)
T KOG4807|consen 364 ELEKLREEKDRLLAEETAATISAIEAMKN 392 (593)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 5666777777666665 333333444433
No 406
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=47.21 E-value=1.6e+02 Score=34.06 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 304 QIEAAGALIDKLITENIELVEKVNDLSV 331 (475)
Q Consensus 304 E~E~l~s~vekL~~enq~LeEe~neL~~ 331 (475)
|+++|...|.+|.-|+.=|..++..+..
T Consensus 34 el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 34 ELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666777777777777666666666654
No 407
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=47.13 E-value=4.5e+02 Score=29.35 Aligned_cols=143 Identities=16% Similarity=0.233 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN-------LQSEKEFWLQKEAALEQKISQLRDESAAL 209 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q-------Lq~EI~~~~qEla~L~peiekL~~Ee~~L 209 (475)
..|+.++..|..-++.-=+--.+|+-..+++...-..++.+|.. |+.-......==++|...|-.|++....|
T Consensus 277 ~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~L 356 (488)
T PF06548_consen 277 EELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDL 356 (488)
T ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888887776666778888888888777766666654 33344444444578888999998888888
Q ss_pred HHHHHhHHHHHHHHHHhhhhhhhhhh--chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 210 NMKRASLEERLKLLEADKDSWTQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 210 kqkLasLEeKl~~LkaERD~WLkkEI--sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
..+=....+.|..++..=.. .-. -=.+++.++..++..|+-+ -|.++..|..|+..|+.+|-..-.-++.
T Consensus 357 l~~Hr~i~egI~dVKkaAak---Ag~kG~~~rF~~slaaEiSalr~e---rEkEr~~l~~eNk~L~~QLrDTAEAVqA 428 (488)
T PF06548_consen 357 LARHRRIMEGIEDVKKAAAK---AGVKGAESRFINSLAAEISALRAE---REKERRFLKDENKGLQIQLRDTAEAVQA 428 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hccccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhHHHHHHH
Confidence 77777777777766322111 112 1246788888888888765 5678889999999999998866554444
No 408
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=46.86 E-value=4.3e+02 Score=29.03 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhH
Q 011909 111 LEGTVQQLQNECDLYK---------EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL 181 (475)
Q Consensus 111 l~e~IkqLq~El~~lk---------~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qL 181 (475)
...+|..+..++...+ ..-.-+...+..|..+.+.++.++..|++.|.+|+.-+-...-+ -...++..+
T Consensus 174 ~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvR--p~~~qle~v 251 (424)
T PF03915_consen 174 VKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVR--PSPKQLETV 251 (424)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--CCHHHHHHH
Confidence 3445555555555333 23455666778899999999999999999999998876543322 233445555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011909 182 QSEKEFWLQKEAALEQKISQ 201 (475)
Q Consensus 182 q~EI~~~~qEla~L~peiek 201 (475)
..+|.....++..|..-|..
T Consensus 252 ~kdi~~a~~~L~~m~~~i~~ 271 (424)
T PF03915_consen 252 AKDISRASKELKKMKEYIKT 271 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444433
No 409
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=46.85 E-value=1.9e+02 Score=24.99 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHH
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 189 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~ 189 (475)
++...++=++.++.........| +.-+.....+-..+......+......-.++ -.+.....
T Consensus 4 ~f~~~~~~v~~el~~t~~d~~LL-------e~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k-----------~~~l~~~l 65 (99)
T PF10046_consen 4 MFSKVSKYVESELEATNEDYNLL-------ENMNKATSLKYKKMKDIAAGLEKNLEDLNQK-----------YEELQPYL 65 (99)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 45566666666666666666663 4444444444444444444444443322222 12233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 190 QKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 190 qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
+.+..|+.++..|..-...|-.=-..||.++
T Consensus 66 ~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444433333444443
No 410
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=46.82 E-value=3.5e+02 Score=28.02 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 011909 80 HLLQREAMAILEETVKHLRNE 100 (475)
Q Consensus 80 ~~~~~~~~~~~eeti~~l~~e 100 (475)
.+|+--. +++..|++|.=.
T Consensus 71 e~L~Sr~--~~~~v~~~l~L~ 89 (362)
T TIGR01010 71 EYMRSRD--MLAALEKELPFR 89 (362)
T ss_pred HHHhhHH--HHHHHHhcCCHH
Confidence 3444444 677777766443
No 411
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=46.59 E-value=74 Score=27.14 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHH
Q 011909 260 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI 316 (475)
Q Consensus 260 esr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~ 316 (475)
+++..|-.++..|+..|..+-.++.... +|+.+|..+.+-|+.-+..|.
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk--------~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVK--------EENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777765555522 244555555555555554443
No 412
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=46.54 E-value=3.8e+02 Score=28.55 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 154 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE 154 (475)
..|++++..+.++-+.|..+..++..+++.++..+..+|
T Consensus 140 ~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E 178 (342)
T PF06632_consen 140 SRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHE 178 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444
No 413
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=46.50 E-value=1e+02 Score=27.75 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=27.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909 176 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 222 (475)
Q Consensus 176 e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~ 222 (475)
+.+.+++..+.....+++.|+..+..|.++|..|.-.-..|-.++..
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566666666666666666666665555555444443
No 414
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=46.43 E-value=3.7e+02 Score=28.12 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=21.2
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 011909 301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLS 343 (475)
Q Consensus 301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~~~~~s 343 (475)
|...+|...+.+-=|+++-..-..+..-|.--+.+.+-+.|-+
T Consensus 269 LdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~ 311 (330)
T KOG2991|consen 269 LDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDK 311 (330)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4445555555555555533333334455555555555554433
No 415
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=46.29 E-value=2e+02 Score=25.07 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=28.6
Q ss_pred HHHHHhhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 166 LHIQREGGLEMNIANLQSEKEF-WLQKEAALEQKISQLRDESAALNMKRA 214 (475)
Q Consensus 166 s~~Qkea~Lee~I~qLq~EI~~-~~qEla~L~peiekL~~Ee~~LkqkLa 214 (475)
.|.+....++.+++-|+...+. |..++..|..++..|..++..|+.++.
T Consensus 24 Lh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 24 LHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666655433 555556666666666666666655554
No 416
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.99 E-value=38 Score=39.87 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011909 190 QKEAALEQKISQLRDESAALN 210 (475)
Q Consensus 190 qEla~L~peiekL~~Ee~~Lk 210 (475)
.+++.+..+|..+..+...|.
T Consensus 505 ~ei~~~~~~ln~~~qq~~~l~ 525 (847)
T KOG0998|consen 505 REISSLEKELNELQQQLSVLE 525 (847)
T ss_pred hhHHHHHHHHhhhHHHHhHHh
Confidence 334444444444444444443
No 417
>PRK04325 hypothetical protein; Provisional
Probab=45.36 E-value=1.4e+02 Score=24.73 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 118 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 118 Lq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
+.+.|..++.+++..+.++..|..-....-+.+..++..++.|..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666655555555555555544444433
No 418
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=45.27 E-value=1.7e+02 Score=27.16 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 260 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVA 339 (475)
Q Consensus 260 esr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~~ 339 (475)
+-..+|.+.|.-|++++...+......-..+ .--..| ..+.|..+|.+|..+++.|+..|.++.-+|+|.+.|
T Consensus 15 E~N~QLekqi~~l~~kiek~r~n~~drl~si-----R~ye~M--s~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKA 87 (129)
T PF15372_consen 15 ELNDQLEKQIIILREKIEKIRGNPSDRLSSI-----RRYEQM--SVESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKA 87 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccHHH-----HHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777765433311111 112334 347888999999999999999999999999999887
No 419
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=44.88 E-value=72 Score=36.71 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011909 217 EERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 272 (475)
Q Consensus 217 EeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqL 272 (475)
-+++..|+++|+.=++... ..+.--.++..++..|+.+++.||.++.-|..|...+
T Consensus 3 RdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 3 RDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665444444 4445557788899999999999999999999888766
No 420
>PRK02793 phi X174 lysis protein; Provisional
Probab=44.87 E-value=1.4e+02 Score=24.72 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 118 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR 161 (475)
Q Consensus 118 Lq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe 161 (475)
+.+.|..++.+++..+.++..|..-....-+.+..++..++.|.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544444444444444444443
No 421
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=44.79 E-value=2.4e+02 Score=25.45 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG 173 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~ 173 (475)
......+..++...+.+|..+..++-...++......
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~ 78 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKREREN 78 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888889999999999988887766555333
No 422
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=44.56 E-value=60 Score=34.46 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011909 181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEER 219 (475)
Q Consensus 181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeK 219 (475)
|.+.++.....++.++..+..+......+...+..++.+
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~k 180 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDK 180 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333333333333
No 423
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.06 E-value=4.9e+02 Score=28.85 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 113 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR 146 (475)
Q Consensus 113 e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~ 146 (475)
..+++|.+.|..+.+++-.+--....+..+.++.
T Consensus 173 ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~ 206 (446)
T KOG4438|consen 173 EEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKM 206 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444444444443
No 424
>PRK00295 hypothetical protein; Provisional
Probab=43.84 E-value=1.5e+02 Score=24.19 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 121 ECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL 160 (475)
Q Consensus 121 El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL 160 (475)
.|..++.+++..+.++..|.......-+.+..++..++.|
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333333333333
No 425
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=43.73 E-value=2.5e+02 Score=25.51 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 011909 117 QLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 196 (475)
Q Consensus 117 qLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~ 196 (475)
.|.++......++...+.-+..+=.-.+...+.+..-.++.==+++...+.... .+.+...|+..|..+.-+|.++.
T Consensus 24 ~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~---R~~~~q~lq~~I~Ek~~eLERl~ 100 (120)
T PF14931_consen 24 ELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQ---REAQQQQLQALIAEKKMELERLR 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444433444444433322 33455667777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 011909 197 QKISQLRDESAAL 209 (475)
Q Consensus 197 peiekL~~Ee~~L 209 (475)
.+|+.|...+..-
T Consensus 101 ~E~~sL~kve~eQ 113 (120)
T PF14931_consen 101 SEYESLQKVEQEQ 113 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766554
No 426
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=43.25 E-value=3.3e+02 Score=26.73 Aligned_cols=114 Identities=12% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH----HHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011909 199 ISQLRDESAALNMKRASLEERLKLL----EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 274 (475)
Q Consensus 199 iekL~~Ee~~LkqkLasLEeKl~~L----kaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLRe 274 (475)
+..++.-.....-.+.-...++..| +-..+.|+.-=-.|+..+..+..++..++++|..+...|..-..+...--.
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~ 178 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELR 178 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHH-HHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 275 NVS-SLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVND 328 (475)
Q Consensus 275 qLd-elqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~ne 328 (475)
.|. .|..-+.. +.+++.+|..++..+.+-++-..+..+
T Consensus 179 ~Le~~W~~~v~k----------------n~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 179 YLEQRWKELVSK----------------NLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
No 427
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=42.90 E-value=4.7e+02 Score=28.37 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH-Hhhhhhhhhhh
Q 011909 203 RDESAALNMKRASLEERLKLLE-ADKDSWTQMES 235 (475)
Q Consensus 203 ~~Ee~~LkqkLasLEeKl~~Lk-aERD~WLkkEI 235 (475)
..+...+.+++..|+.++..|. ..++.|+..|+
T Consensus 105 e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEa 138 (390)
T PRK10920 105 NRQQAALAKQLDELQQKVATISGSDAKTWLLAQA 138 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 3334444445555555555553 33366666665
No 428
>PRK04406 hypothetical protein; Provisional
Probab=42.61 E-value=1.6e+02 Score=24.60 Aligned_cols=6 Identities=33% Similarity=0.551 Sum_probs=2.2
Q ss_pred HHHHHH
Q 011909 156 TIKQLR 161 (475)
Q Consensus 156 kIKdLe 161 (475)
+|-+|+
T Consensus 12 Ri~~LE 17 (75)
T PRK04406 12 RINDLE 17 (75)
T ss_pred HHHHHH
Confidence 333333
No 429
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.55 E-value=3.6e+02 Score=27.39 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 117 QLQNECDLYKEKVATLEETIQQLQRQN 143 (475)
Q Consensus 117 qLq~El~~lk~kl~~L~etikQLe~d~ 143 (475)
+|+.++..+..++.....-+.+|+.|+
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL 29 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDL 29 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 430
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=42.50 E-value=1.4e+02 Score=32.26 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=24.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011909 250 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 290 (475)
Q Consensus 250 sLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Ee 290 (475)
.|..+...+......+..++..+.+++...-..++++=.+.
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~ 110 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDS 110 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 35555555555555666666666666666666666654443
No 431
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.40 E-value=2.4e+02 Score=24.86 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 119 QNECDLYKEKVATLEETIQQLQRQNDL 145 (475)
Q Consensus 119 q~El~~lk~kl~~L~etikQLe~d~~~ 145 (475)
...+..+...+..|...+..+.....+
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e 31 (129)
T cd00584 5 AAQLQVLQQEIEELQQELARLNEAIAE 31 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443333
No 432
>PRK00736 hypothetical protein; Provisional
Probab=42.27 E-value=1.7e+02 Score=23.98 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 120 NECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 120 ~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
+.|..++.+++..+.++..|.......-+.+..+...++-|.+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444444444444444444433
No 433
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.22 E-value=59 Score=24.74 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=27.3
Q ss_pred hhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 299 KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 334 (475)
Q Consensus 299 ~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~ 334 (475)
..|.+.-+.|.+..+.|..+|+.|..++..|..+|.
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356667777888888888888888888888877653
No 434
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=42.22 E-value=2.3e+02 Score=24.48 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 242 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 242 Ssl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
..+...+..+...+..++.....+.++...++..|.
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444443
No 435
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=42.12 E-value=4.2e+02 Score=27.54 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=19.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 238 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 288 (475)
Q Consensus 238 ke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~ 288 (475)
.+.+.....++..+..++.. ..+++..++.++..++.++..++.
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~-------~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQ-------KEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444 444444444444444444444343
No 436
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=41.93 E-value=2.4e+02 Score=24.74 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011909 181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE 218 (475)
Q Consensus 181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEe 218 (475)
+..-+.....++..+...+..+...-..+..+...+..
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 437
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.93 E-value=1.5e+02 Score=24.52 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909 153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 193 (475)
Q Consensus 153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla 193 (475)
+|.+|-+|+..+.-...--..|.+.+..-+..|+.....+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333334444444444333333
No 438
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=41.69 E-value=2e+02 Score=25.33 Aligned_cols=70 Identities=23% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHh
Q 011909 188 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVEL 258 (475)
Q Consensus 188 ~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L--kaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeL 258 (475)
|...--.-..++..+.+.-..+..++..+|.++.+| +.+=.. |+-+| .++..+..+...+..+..++.-|
T Consensus 26 ~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~-L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 26 WLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHD-LQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 439
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=41.53 E-value=3.2e+02 Score=26.00 Aligned_cols=81 Identities=22% Similarity=0.250 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 202 LRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 202 L~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
|..+++.+..+.+.|..=+...+++--..-+.++ .+-+..+-..-.+..|.-+..-+.+.+.++.++.+.+..+..-|-
T Consensus 35 L~~ee~~~~~Q~~~L~~LL~~~r~~~~vl~r~~L~allRkqAVvRrqi~eL~lq~~~i~ekR~~l~ke~~~~~~~r~~wl 114 (147)
T PF02090_consen 35 LDAEEEAIEEQRAGLQSLLDTQRAEGCVLSREELYALLRKQAVVRRQIQELNLQEQQIQEKRRQLEKEKQEQQEQRKHWL 114 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333566556667888 888999999999999999999999999999999999999988774
Q ss_pred hh
Q 011909 281 SQ 282 (475)
Q Consensus 281 se 282 (475)
.-
T Consensus 115 rK 116 (147)
T PF02090_consen 115 RK 116 (147)
T ss_pred Hh
Confidence 43
No 440
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.53 E-value=1.5e+02 Score=29.96 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 154 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 154 E~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
+.++..|+.....+.+...++..+|..|+.+|..
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~ 72 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDS 72 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444444444444433
No 441
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.28 E-value=5.7e+02 Score=28.84 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 127 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 127 ~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
+..+.....++.+..+...+-+..+..=.+|.++++
T Consensus 348 q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~ 383 (508)
T KOG3091|consen 348 QEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKN 383 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 333333333333333333333333333334444333
No 442
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=41.24 E-value=3.7e+02 Score=26.68 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=59.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-ch-HHHHhhhHHHHHHHHHHH
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VS-KETIAGLSVDITQLRMQV 255 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sL-ke~ISsl~~EiksLqeEV 255 (475)
++.+-..+..|..++..|+....+|+++|..|+.---.|-..++ |..| |-.|- -. .=..+.+..+...-..++
T Consensus 43 m~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRq--Kgrk---larEWQrFGryta~vmr~eV~~Y~~KL 117 (195)
T PF10226_consen 43 MKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQ--KGRK---LAREWQRFGRYTASVMRQEVAQYQQKL 117 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHH--HhHH---HhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44555667778888999999999999988888543333322111 0000 11222 11 113455666777788888
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 011909 256 VELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 256 keLEesr~eL~kEIqqLReqL 276 (475)
++||.....|..|+..|++--
T Consensus 118 ~eLE~kq~~L~rEN~eLKElc 138 (195)
T PF10226_consen 118 KELEDKQEELIRENLELKELC 138 (195)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 888888888888888775543
No 443
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=40.69 E-value=1.6e+02 Score=23.90 Aligned_cols=51 Identities=22% Similarity=0.379 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR 161 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe 161 (475)
++.-|-+|+..+......++.|...+-....+.+.+-+....+..+|+++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555555555555555555555555555666655
No 444
>smart00340 HALZ homeobox associated leucin zipper.
Probab=40.37 E-value=52 Score=25.21 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=21.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 306 EAAGALIDKLITENIELVEKVNDLSV 331 (475)
Q Consensus 306 E~l~s~vekL~~enq~LeEe~neL~~ 331 (475)
|-|-.-++.|+.+|++|.-+|.+|++
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555678899999999999999977
No 445
>PF15294 Leu_zip: Leucine zipper
Probab=39.98 E-value=4.6e+02 Score=27.37 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=32.7
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
+..+|.+|+.|++.....+..+........++...+..+|..+...+-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~ 177 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQG 177 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777777666666655333
No 446
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=39.51 E-value=86 Score=24.70 Aligned_cols=30 Identities=37% Similarity=0.494 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 248 ITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 248 iksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
+..|...+..|+.....|..++..|...+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444433333333333333333333
No 447
>PRK00846 hypothetical protein; Provisional
Probab=38.90 E-value=1.6e+02 Score=24.99 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=20.5
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
.|+..++=+...+..|..-|.........+...+.-|.++|...+
T Consensus 17 ~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 17 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444444444444444444444444455555555443
No 448
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.77 E-value=1.8e+02 Score=22.92 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=9.1
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhHH
Q 011909 237 SKETIAGLSVDITQLRMQVVELEE 260 (475)
Q Consensus 237 Lke~ISsl~~EiksLqeEVkeLEe 260 (475)
|+..+..+..++..|..++..|..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 449
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.42 E-value=88 Score=27.59 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATL 153 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~l 153 (475)
++..+..++.++..++++-+.|..++..|+++. +++.+.|..
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~-dyiEe~AR~ 73 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ-EAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH-HHHHHHHHH
Confidence 344555555566666666666666666665532 455555543
No 450
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=38.25 E-value=5.2e+02 Score=27.54 Aligned_cols=9 Identities=22% Similarity=0.095 Sum_probs=5.1
Q ss_pred cchhhhHHH
Q 011909 68 AESANLAEA 76 (475)
Q Consensus 68 ~~~~~~~~~ 76 (475)
++..|.-+|
T Consensus 48 s~~ei~~~A 56 (342)
T PF06632_consen 48 SEEEIRQRA 56 (342)
T ss_dssp EHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 555565555
No 451
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.22 E-value=4.9e+02 Score=27.22 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 169 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q 169 (475)
+...+..|+..-....+...-....+++|+.......+.-..+..+|+.+...+.....
T Consensus 52 l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~ 110 (297)
T KOG0810|consen 52 LDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADET 110 (297)
T ss_pred HHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444445544444445555566677888888888888888889999988888776664
No 452
>PRK14011 prefoldin subunit alpha; Provisional
Probab=37.98 E-value=3.4e+02 Score=25.37 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 242 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 242 Ssl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
......+.-+...+..|+.....+..-++.+...+..++..++.
T Consensus 84 k~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~ 127 (144)
T PRK14011 84 KDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEK 127 (144)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777778888888888888777777777766555444
No 453
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=37.92 E-value=2.4e+02 Score=23.49 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQR 141 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~ 141 (475)
+.-.|..++..+.++.++-..|..++..+..
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~ 42 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNE 42 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555544444444
No 454
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=37.90 E-value=3.7e+02 Score=25.68 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
=.+-..+--++.-++.++..|..+.+.||-.+..|
T Consensus 83 Ye~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l 117 (159)
T PF05384_consen 83 YEEAHELQVRLAMLREREKQLRERRDELERRLRNL 117 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555566666777777777777777766
No 455
>PHA03161 hypothetical protein; Provisional
Probab=37.74 E-value=3.6e+02 Score=25.79 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=18.1
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.++..|..+...|...++++.-|-.--.-....+..|.+++.++
T Consensus 58 ~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eL 101 (150)
T PHA03161 58 SIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILEL 101 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333333333333333333
No 456
>PRK14011 prefoldin subunit alpha; Provisional
Probab=37.68 E-value=3.5e+02 Score=25.34 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=26.9
Q ss_pred hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 297 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 335 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~ 335 (475)
=-+.+...++.+.+..+++..--+++...+.+|...|++
T Consensus 89 A~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~ 127 (144)
T PRK14011 89 VIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEK 127 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777655543
No 457
>PRK00846 hypothetical protein; Provisional
Probab=37.65 E-value=2.2e+02 Score=24.15 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 118 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 118 Lq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
+.+.|..++.+++..+.++..|.......-+.+..+...++-|.+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444444444444444444333
No 458
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.59 E-value=1.4e+02 Score=30.81 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=17.7
Q ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 011909 169 QREGGLEMNIANLQSEKEFWLQKEAALE 196 (475)
Q Consensus 169 Qkea~Lee~I~qLq~EI~~~~qEla~L~ 196 (475)
+-+..+.+...+|+.++.+.+.+++.|.
T Consensus 267 ~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 267 ELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455567777777777777766554
No 459
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=37.31 E-value=6.3e+02 Score=28.17 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=5.2
Q ss_pred HHHhhccccc
Q 011909 458 FVAKYVSGAD 467 (475)
Q Consensus 458 fva~yvsgad 467 (475)
=+||-.||.+
T Consensus 539 EiArml~G~~ 548 (563)
T TIGR00634 539 ELARMLAGLE 548 (563)
T ss_pred HHHHHhCCCC
Confidence 3555555544
No 460
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=36.76 E-value=4e+02 Score=25.76 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcch-hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 83 QREAMAILEETVKHLRNER-ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR 161 (475)
Q Consensus 83 ~~~~~~~~eeti~~l~~e~-~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe 161 (475)
..+|-.|+++--+.-++.. +..+.-..-..+.-..++.++.....++..++..+.+-+..++.-.......+..|...+
T Consensus 33 ~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~ 112 (201)
T PF12072_consen 33 EKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKE 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 162 NQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQK 198 (475)
Q Consensus 162 ~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~pe 198 (475)
.........-.....++..+..+-...+.+.+.|..+
T Consensus 113 ~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~e 149 (201)
T PF12072_consen 113 EELEQRKEELEEREEELEELIEEQQQELEEIAGLTAE 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
No 461
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=36.72 E-value=1.9e+02 Score=23.52 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011909 121 ECDLYKEKVATLEETIQQLQ 140 (475)
Q Consensus 121 El~~lk~kl~~L~etikQLe 140 (475)
.+..++.++..+...+..|+
T Consensus 7 ~l~~ie~~l~~~~~~i~~lE 26 (71)
T PF10779_consen 7 KLNRIETKLDNHEERIDKLE 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 462
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.71 E-value=2.7e+02 Score=23.78 Aligned_cols=88 Identities=20% Similarity=0.331 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH-HH
Q 011909 112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW-LQ 190 (475)
Q Consensus 112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~-~q 190 (475)
......+..++..+..+...|+...+++.-+- ---+.+++|.. =+..++.-+.+++..+... ..
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ged--------L~~Ls~~eL~~-------LE~~Le~aL~~VR~rK~~~l~~ 75 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGED--------LESLSLKELQQ-------LEQQLESALKRVRSRKDQLLME 75 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------ccccchHHHHH-------HHHhhhhhHHHHHHHHHHHHHH
Confidence 34455566666666666666666666555321 00122222222 2333445555566555543 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 191 KEAALEQKISQLRDESAALNMKRA 214 (475)
Q Consensus 191 Ela~L~peiekL~~Ee~~LkqkLa 214 (475)
++..+..+...|..++..|.++++
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446677777777777777766654
No 463
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.69 E-value=6.8e+02 Score=29.72 Aligned_cols=93 Identities=20% Similarity=0.220 Sum_probs=59.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHH
Q 011909 107 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 186 (475)
Q Consensus 107 ~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~ 186 (475)
++.+.++....++-+-..+..++....+.+.|+.+......++...++.+|.=++.. ..+..++.....++....
T Consensus 521 k~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~-----~~~~~i~~l~~el~eq~~ 595 (809)
T KOG0247|consen 521 KEKECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILEST-----EYEEEIEALDQELEEQKM 595 (809)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc-----hhhhhhHHHHHHHHhhhH
Confidence 334444444455555567778888999999999999999999999988888877776 233334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011909 187 FWLQKEAALEQKISQLRD 204 (475)
Q Consensus 187 ~~~qEla~L~peiekL~~ 204 (475)
.+.++.....++..+...
T Consensus 596 ~~~~~~~~~~~~~~~~~~ 613 (809)
T KOG0247|consen 596 ELQQKFSEKKKAMAKVRG 613 (809)
T ss_pred HHHhhccchhHHHhhhcc
Confidence 555555555555444443
No 464
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=36.68 E-value=4.3e+02 Score=26.16 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 126 KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 126 k~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
...++.-+..+-+|+.++..+-+.++.-+.+...|+....-..+.++.....-.+.+.+...
T Consensus 97 t~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~a 158 (192)
T PF11180_consen 97 TARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQA 158 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677777777777777777777777777666555555444444444444333
No 465
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.59 E-value=1.3e+02 Score=25.99 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 198 KISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 198 eiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
....+.++...++.++...|.++..|
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 34445555555555555555555555
No 466
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.59 E-value=6.4e+02 Score=28.07 Aligned_cols=61 Identities=23% Similarity=0.159 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH----hhhhHHHHHhHHHHHHHHHH
Q 011909 130 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR----EGGLEMNIANLQSEKEFWLQ 190 (475)
Q Consensus 130 ~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qk----ea~Lee~I~qLq~EI~~~~q 190 (475)
..|+..=+||+.|+...++.++.+|..++.+.+...-..+. .+.-+.-+..|+.+|.....
T Consensus 295 ~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~ 359 (542)
T KOG0993|consen 295 FILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQS 359 (542)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555567999999999999999999999888765433222 22223334445555544433
No 467
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.54 E-value=3.3e+02 Score=27.54 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=15.2
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ 336 (475)
Q Consensus 301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~ 336 (475)
|+.++|.+.-.+++ +.+.-++|+..||..
T Consensus 73 LrG~~E~~~~~l~~-------~~~rq~~~y~dld~r 101 (263)
T PRK10803 73 LRGQIQENQYQLNQ-------VVERQKQIYLQIDSL 101 (263)
T ss_pred HhhHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 44444444444444 444556666666654
No 468
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=36.48 E-value=4.5e+02 Score=26.26 Aligned_cols=69 Identities=13% Similarity=0.241 Sum_probs=50.0
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909 101 RESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 169 (475)
Q Consensus 101 ~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q 169 (475)
.++|.+-|.-+++...+|.+.-.++...+..|..+...|+.++..+++.++.++..+++-...+....+
T Consensus 26 ~~i~~e~e~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~ 94 (228)
T PRK06800 26 KPIEVEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQ 94 (228)
T ss_pred chhhHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566667777777888888888888888888999888888888888777665555444433
No 469
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=36.39 E-value=6.2e+02 Score=27.85 Aligned_cols=102 Identities=20% Similarity=0.156 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 198 KISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 198 eiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqL 276 (475)
--.+|...-..|-.++..|+.-+..|..+ -++.=. ....++.....++..+.+++.. +...+...+-..
T Consensus 207 ~k~~L~~~sd~Ll~kVdDLQD~VE~LRkD---V~~RgvRp~~~qle~v~kdi~~a~~~L~~-------m~~~i~~~kp~W 276 (424)
T PF03915_consen 207 GKKKLSEESDRLLTKVDDLQDLVEDLRKD---VVQRGVRPSPKQLETVAKDISRASKELKK-------MKEYIKTEKPIW 276 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCcCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhCHHH
Confidence 33344444444545555555555544322 122333 3444444444444444444444 444444444444
Q ss_pred H-HHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHH
Q 011909 277 S-SLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLIT 317 (475)
Q Consensus 277 d-elqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~ 317 (475)
. -|..+++. +| +|-+-|+.|-+.+..+-+.|..
T Consensus 277 kKiWE~EL~~------V~--eEQqfL~~QedL~~DL~eDl~k 310 (424)
T PF03915_consen 277 KKIWESELQK------VC--EEQQFLKLQEDLLSDLKEDLKK 310 (424)
T ss_dssp HHHHHHHHHH------HH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34444444 34 4666666666655555555533
No 470
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.29 E-value=3.4e+02 Score=24.88 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 248 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 284 (475)
Q Consensus 248 iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiq 284 (475)
...|.+.+..|+-....|.+....++++++++++.+.
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 471
>PRK00736 hypothetical protein; Provisional
Probab=36.14 E-value=1.9e+02 Score=23.63 Aligned_cols=16 Identities=13% Similarity=-0.053 Sum_probs=6.0
Q ss_pred HHHHHhHHHHHHHHHH
Q 011909 175 EMNIANLQSEKEFWLQ 190 (475)
Q Consensus 175 ee~I~qLq~EI~~~~q 190 (475)
.+.+.+-+..|+....
T Consensus 25 n~~v~~Qq~~i~~L~~ 40 (68)
T PRK00736 25 SDQLAEQWKTVEQMRK 40 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 472
>PLN02320 seryl-tRNA synthetase
Probab=36.03 E-value=1.8e+02 Score=32.51 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909 248 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 291 (475)
Q Consensus 248 iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eea 291 (475)
...|..+...|......+..++..+.+++..+-..++++=.+.+
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~V 175 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDV 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 34455555556666666666666666666666667666544433
No 473
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=34.96 E-value=5.4e+02 Score=26.75 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHh--hhhHHHHHhHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE--GGLEMNIANLQSEKEFW 188 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qke--a~Lee~I~qLq~EI~~~ 188 (475)
|++.+.+|+.-+...+.+.+.|.++...-+.=.++.-+-...+..+.++|++........+ ..+..++..++......
T Consensus 94 lqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~~~k~~~e~L 173 (268)
T PF11802_consen 94 LQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTKIEKIKEYKEKL 173 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 011909 189 LQKEAALEQKI 199 (475)
Q Consensus 189 ~qEla~L~pei 199 (475)
..-+..+..++
T Consensus 174 l~~LgeFLeeH 184 (268)
T PF11802_consen 174 LSFLGEFLEEH 184 (268)
T ss_pred HHHHHHHHHhc
No 474
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=34.96 E-value=2.9e+02 Score=23.70 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909 131 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 163 (475)
Q Consensus 131 ~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~ 163 (475)
.+..++..|..++..+-+..-..+.+...|+..
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~ 68 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEA 68 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 475
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=34.84 E-value=4.8e+02 Score=26.13 Aligned_cols=76 Identities=12% Similarity=0.230 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909 87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 166 (475)
Q Consensus 87 ~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s 166 (475)
|+-++.||-.+- ..-+.++==..|..|+..+..++..++......++++..+..+++..+..+-.+.+|=...++
T Consensus 11 ~d~lq~~i~~as-----~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s 85 (207)
T PF05546_consen 11 MDSLQETIFTAS-----QALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS 85 (207)
T ss_pred HHHHHHHHHHHH-----HHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 555566654432 222334445678889999999999999999999999999999999999999988888777555
Q ss_pred H
Q 011909 167 H 167 (475)
Q Consensus 167 ~ 167 (475)
.
T Consensus 86 W 86 (207)
T PF05546_consen 86 W 86 (207)
T ss_pred C
Confidence 3
No 476
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=34.66 E-value=1.9e+02 Score=31.31 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 188 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~ 188 (475)
|.+.++.|..++..+..++..+...+..+..... .-+.-......+..+........++...+.+++..|+..+...
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 477
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=34.47 E-value=1.7e+02 Score=25.27 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 110 TLEGTVQQLQNECDLYKEKV---ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl---~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
-+++.|.+....++....++ ....+.++.++.+...........|.+++.|+..+.
T Consensus 9 ~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 9 GLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 35666666666666555444 344566777777777777777777777777776544
No 478
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.44 E-value=1.2e+02 Score=33.67 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 191 KEAALEQKISQLRDESAALNMKRASLEERLKLLE 224 (475)
Q Consensus 191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~Lk 224 (475)
+.+.|+.+|+.|+.+...+..++..++.+|+.|.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLE 110 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLG 110 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3344444444444444444444455555554333
No 479
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=34.24 E-value=2.8e+02 Score=25.41 Aligned_cols=50 Identities=8% Similarity=0.167 Sum_probs=25.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
+...|..+...+.....--..+..+|..++.....|..++-.+-.++..|
T Consensus 49 ~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eil 98 (141)
T PF13874_consen 49 HRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEIL 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433335555566666666666666655554444433
No 480
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=34.24 E-value=3.6e+02 Score=24.53 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 136 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 215 (475)
Q Consensus 136 ikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLas 215 (475)
...|.+++..+..+...+..-+..|-..++..... ++.++-..+---..+...-++...+...+...+.+
T Consensus 22 t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~----------VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~E 91 (120)
T PF14931_consen 22 TQELKEECKEFVEKISEFQKIVKGFIEILDELAKR----------VENEKLKAIGARNLLKSEAKQREAQQQQLQALIAE 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677888888888888888877777766544443 33333333333344444455555566666666677
Q ss_pred HHHHHHHHHHhhhhhhhhhhc
Q 011909 216 LEERLKLLEADKDSWTQMESV 236 (475)
Q Consensus 216 LEeKl~~LkaERD~WLkkEIs 236 (475)
...++.+|..+.++|.+-|-.
T Consensus 92 k~~eLERl~~E~~sL~kve~e 112 (120)
T PF14931_consen 92 KKMELERLRSEYESLQKVEQE 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776665543
No 481
>PRK12704 phosphodiesterase; Provisional
Probab=34.20 E-value=7.1e+02 Score=27.90 Aligned_cols=10 Identities=40% Similarity=0.644 Sum_probs=4.7
Q ss_pred chhHHHHHHh
Q 011909 452 PFRLVSFVAK 461 (475)
Q Consensus 452 pfrlisfva~ 461 (475)
|||.-..|++
T Consensus 281 P~~iee~~~~ 290 (520)
T PRK12704 281 PARIEEMVEK 290 (520)
T ss_pred CCCHHHHHHH
Confidence 4554444443
No 482
>PRK15335 type III secretion system protein SpaM; Provisional
Probab=34.13 E-value=4e+02 Score=25.05 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 204 DESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 204 ~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.+..++..+.+.|-.=+..+..+.-++=+.|| .|-+..+-..-++..|.=++.-+++.+.++.++-+.+..+...|
T Consensus 37 ~e~Eai~~q~agLk~LL~~~r~e~~~l~r~elyallRrqaivRRQ~~~L~Lq~~~iqEKr~elqkeke~~~k~~~yW 113 (147)
T PRK15335 37 AEEEAILEQIAGLKLLLDTLRAENRQLSREEIYTLLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQKKSKYW 113 (147)
T ss_pred HHHHHHHHHHhHHHHHHHHhchhcccccHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445666666667788 88888888888888888888888888888888877777776655
No 483
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=34.10 E-value=2.4e+02 Score=24.12 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=30.9
Q ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 170 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 216 (475)
Q Consensus 170 kea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL 216 (475)
.+..+-.++..||.-......+....+.+..+|..+|..|.+=+..|
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777777777777777777665444433
No 484
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.03 E-value=1.2e+02 Score=24.24 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 248 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 286 (475)
Q Consensus 248 iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsL 286 (475)
+..|..++-.++.....+..+++++++.++.....++.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.80 E-value=7e+02 Score=27.69 Aligned_cols=68 Identities=26% Similarity=0.250 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHH
Q 011909 248 ITQLRMQVVELEESRNN---LLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLIT 317 (475)
Q Consensus 248 iksLqeEVkeLEesr~e---L~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~ 317 (475)
...|..+-+-|++..+. +..+...+...+.+..-+..+++... ....++-.|..+++.....++++..
T Consensus 264 ~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~--v~lke~~~Le~q~e~~~~e~~~lk~ 334 (446)
T KOG4438|consen 264 MVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKV--VELKEILELEDQIELNQLELEKLKM 334 (446)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333 23334444444444333334333322 2345777777777777776666653
No 486
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=33.72 E-value=3.1e+02 Score=24.82 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=13.2
Q ss_pred HhHHHHHHHHHhhhhHH
Q 011909 151 ATLEETIKQLRNQNDLH 167 (475)
Q Consensus 151 A~lE~kIKdLe~~~~s~ 167 (475)
..+|++|+||+.+..--
T Consensus 3 sQmElrIkdLeselsk~ 19 (111)
T PF12001_consen 3 SQMELRIKDLESELSKM 19 (111)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 57899999999886533
No 487
>smart00338 BRLZ basic region leucin zipper.
Probab=33.64 E-value=1.5e+02 Score=23.29 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 238 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 238 ke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqL 276 (475)
+..+..+...+..|..+...|......+..++..|+..+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 488
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=33.61 E-value=5e+02 Score=25.99 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=71.0
Q ss_pred HHHHHhhhhHHHHHhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Q 011909 157 IKQLRNQNDLHIQREGGLE--MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 234 (475)
Q Consensus 157 IKdLe~~~~s~~Qkea~Le--e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkE 234 (475)
+..|+..+....+.-.++- ..|..|+..|...+..+......+...+.....--++.+..+-+++.|-.-++.|.-..
T Consensus 11 ~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~D 90 (207)
T PF05546_consen 11 MDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPAD 90 (207)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHH
Confidence 3444444444444322221 34778888888888888888888888888888888888888889998888889997776
Q ss_pred h----chHHHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 011909 235 S----VSKETIAGLSVDITQLRMQVVELEESRNNL 265 (475)
Q Consensus 235 I----sLke~ISsl~~EiksLqeEVkeLEesr~eL 265 (475)
+ .|-+.=-.+......++..+.+.|.....+
T Consensus 91 leRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~ 125 (207)
T PF05546_consen 91 LERFTELYRNDHENEQAEEEAKEALEEAEEKVEEA 125 (207)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6 233333344444455555555555444333
No 489
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.39 E-value=5.2e+02 Score=26.05 Aligned_cols=97 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 120 NECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKI 199 (475)
Q Consensus 120 ~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~pei 199 (475)
..+-.+-..+..+... +++..++..+-+..+..-- |+.++++....-..+++++...+++.+....+-..+..+.
T Consensus 114 ~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 114 RRLHTLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 011909 200 SQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 200 ekL~~Ee~~LkqkLasLEeKl~ 221 (475)
+.+..+.+-|..+-..|.+++.
T Consensus 189 e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 189 EGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHcccHHHHHHHHHHHHHHHHh
No 490
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=33.31 E-value=7.3e+02 Score=27.77 Aligned_cols=177 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 79 QHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK 158 (475)
Q Consensus 79 ~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIK 158 (475)
+||+..=- ..+.++..|....+.+-+-.+.-++.- ++..-.....+....+......+......+....+.++..-+
T Consensus 19 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~ 95 (475)
T PRK10361 19 GWLFASYQ--HAQQKAEQLAEREEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQ 95 (475)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchH
Q 011909 159 QLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK 238 (475)
Q Consensus 159 dLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLk 238 (475)
..........+.+..|..+-..|=.+|=....+--. ..--..|..--.=++.++..++.++..+..++-. .-..|+
T Consensus 96 ~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~-~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~---~~~~L~ 171 (475)
T PRK10361 96 HADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVD-EQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQ---ERHTLA 171 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHH
Q 011909 239 ETIAGLSVDITQLRMQVVELEESR 262 (475)
Q Consensus 239 e~ISsl~~EiksLqeEVkeLEesr 262 (475)
..|..+......+..+-..|-...
T Consensus 172 ~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 172 HEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=33.23 E-value=6.1e+02 Score=26.88 Aligned_cols=129 Identities=22% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 78 RQHLLQREAMAILEETVKHLRNERESHIQKEATL------EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA 151 (475)
Q Consensus 78 ~~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l------~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA 151 (475)
+-.+|+..-++.++-+++.|..+.+---.+.... +..|.+|=+-+..+..=...|..-+..|+.
T Consensus 254 ~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~t---------- 323 (388)
T PF04912_consen 254 QLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKT---------- 323 (388)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHH----------
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 152 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 224 (475)
Q Consensus 152 ~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lk 224 (475)
++.|+.......+.-..++.....++..+..|..=+..+... +..-...+...+..+++++..||
T Consensus 324 -----L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 324 -----LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
No 492
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=33.09 E-value=3.6e+02 Score=24.17 Aligned_cols=76 Identities=24% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 191 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qE 191 (475)
+.|=.+-..+.....+|....-.=+.....+-...-..|-.|+.+++++++..=+...|..++..|+.+++.....
T Consensus 1 Qkla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~ 76 (102)
T PF10205_consen 1 QKLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQK 76 (102)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 493
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=33.05 E-value=1.1e+02 Score=27.25 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEE 155 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~ 155 (475)
+...|..++++++.+.+....|...++.|++. .+++.+.|..+.
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg-~~~i~e~AR~~l 98 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLKDG-RDYIEERARSEL 98 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHh
No 494
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=32.85 E-value=3.2e+02 Score=25.67 Aligned_cols=76 Identities=9% Similarity=0.111 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--hhhhhhhhhh-chHHHHh----hhHHHHHHH
Q 011909 179 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA--DKDSWTQMES-VSKETIA----GLSVDITQL 251 (475)
Q Consensus 179 ~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lka--ERD~WLkkEI-sLke~IS----sl~~EiksL 251 (475)
.++..-+..+-..+...+.++..+..+...++.+|......|..|+. .-..=|+.+| .|+.... .+...+..+
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 011909 252 RMQ 254 (475)
Q Consensus 252 qeE 254 (475)
+..
T Consensus 82 ~~~ 84 (155)
T PF06810_consen 82 KKD 84 (155)
T ss_pred HHH
No 495
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=32.48 E-value=3.1e+02 Score=27.73 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011909 187 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVV 256 (475)
Q Consensus 187 ~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVk 256 (475)
+..++...+.-+|..|...+..|..+++.+..|+..-+.--.....-|- ..++.|..+...+..|+.++.
T Consensus 182 qae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 182 QAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 496
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=32.30 E-value=6.4e+02 Score=27.75 Aligned_cols=89 Identities=18% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH---------------HHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHH
Q 011909 199 ISQLRDESAALNMKRASLEERLKLL---------------EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN 263 (475)
Q Consensus 199 iekL~~Ee~~LkqkLasLEeKl~~L---------------kaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~ 263 (475)
+..++.+-.++++-.+.|++....| +.||=..-+-|--|..-..-+..+|..|+.++...++...
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerva 341 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVA 341 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhhh
Q 011909 264 -NLLQENRQLKENVSSLRSQLSSDE 287 (475)
Q Consensus 264 -eL~kEIqqLReqLdelqseiqsLE 287 (475)
+--+.-....+-++.++.++..|+
T Consensus 342 YQsyERaRdIqEalEscqtrisKlE 366 (455)
T KOG3850|consen 342 YQSYERARDIQEALESCQTRISKLE 366 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.27 E-value=4.4e+02 Score=24.86 Aligned_cols=97 Identities=28% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------------------------------
Q 011909 182 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-------------------------------------- 223 (475)
Q Consensus 182 q~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L-------------------------------------- 223 (475)
+.+.+.....+-.+..+++.|..+-..|...+.++..-+.-|
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred --HHhhhhhhhhhh--chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 224 --EADKDSWTQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 281 (475)
Q Consensus 224 --kaERD~WLkkEI--sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqs 281 (475)
.++++. .|- .|++.+..+...+..+...+.+|......+..+++.+..+-...+.
T Consensus 85 g~~ae~~~---~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~ 143 (145)
T COG1730 85 GYYAEKSA---DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK 143 (145)
T ss_pred ceeeeecH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 498
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=32.25 E-value=6.5e+02 Score=26.86 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011909 139 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE 218 (475)
Q Consensus 139 Le~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEe 218 (475)
+..-..+++.=.-.+|-.+-+|+-.+.....-=-.+-+++.++.+-|.+ +.....|.+.+|.++-.--..++++.|.
T Consensus 193 vl~s~tDa~eW~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~---~~~~~~~~Ldklh~eit~~LEkI~SREK 269 (384)
T KOG0972|consen 193 VLQSNTDAIEWKLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQ---KVGNVGPYLDKLHKEITKALEKIASREK 269 (384)
T ss_pred HHhhcchHHHHHHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHH---hhcchhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-HHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 011909 219 RLK-LLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS 296 (475)
Q Consensus 219 Kl~-~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~e 296 (475)
-++ +|.. |-++- .+...++.+....+.+..-+..--...+..-.++..++..+++..+....
T Consensus 270 ~lNnqL~~-----l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msD----------- 333 (384)
T KOG0972|consen 270 SLNNQLAS-----LMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSD----------- 333 (384)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----------
Q ss_pred hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 297 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
+++|-+..+.-.-|+++...+-+++
T Consensus 334 ------------GaplvkIkqavsKLk~et~~mnv~i 358 (384)
T KOG0972|consen 334 ------------GAPLVKIKQAVSKLKEETQTMNVQI 358 (384)
T ss_pred ------------CchHHHHHHHHHHHHHHHHhhhhhe
No 499
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.15 E-value=5.2e+02 Score=25.75 Aligned_cols=190 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 128 KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 207 (475)
Q Consensus 128 kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~ 207 (475)
++..|....+....+...-...+-.+--.+++++......... +..++.-...+..++.....++....++..
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~-------~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~ 83 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQ-------IQELQDSLRTKQLELEVCENELQRKKNEAE 83 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHhhHhHHHhHHHHHHHhCHHH
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhh--hhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 208 ALNMKRASLEERLKLLEADKDSW--TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 208 ~LkqkLasLEeKl~~LkaERD~W--LkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
.+..++..++..+..|+.+-... ...+...-..-..-...-..-...+..|.....-|..++...|...+.....+..
T Consensus 84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ 163 (202)
T PF06818_consen 84 LLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ 163 (202)
T ss_pred HhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 286 DESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 335 (475)
Q Consensus 286 LE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~ 335 (475)
|-+.-..|-|+.-.-=..|+..-=++--+-..|.-.|.+
T Consensus 164 -----------ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~q 202 (202)
T PF06818_consen 164 -----------ERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELRQ 202 (202)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 500
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.00 E-value=3e+02 Score=22.92 Aligned_cols=82 Identities=24% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH---------------HHHHhhhhHHHHHhHHHHHHHH
Q 011909 124 LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL---------------HIQREGGLEMNIANLQSEKEFW 188 (475)
Q Consensus 124 ~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s---------------~~Qkea~Lee~I~qLq~EI~~~ 188 (475)
....+...|......+..++..+-..+..++..+.+|..--+. ...-...+++.+..++.+|...
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDE 205 (475)
Q Consensus 189 ~qEla~L~peiekL~~E 205 (475)
...+..+..++..+...
T Consensus 82 ~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Done!