Query 011909
Match_columns 475
No_of_seqs 94 out of 103
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.1 4E-06 1.4E-10 76.6 36.3 129 90-218 18-146 (284)
2 1i84_S Smooth muscle myosin he 98.6 1.5E-07 5E-12 108.5 10.6 13 84-96 818-830 (1184)
3 1i84_S Smooth muscle myosin he 98.5 3.4E-07 1.2E-11 105.4 10.7 111 111-221 883-993 (1184)
4 3na7_A HP0958; flagellar bioge 97.5 0.013 4.3E-07 56.8 21.3 40 115-154 13-52 (256)
5 2v71_A Nuclear distribution pr 97.5 0.015 5.1E-07 54.9 20.4 162 142-336 18-180 (189)
6 2v71_A Nuclear distribution pr 97.4 0.013 4.4E-07 55.3 18.7 100 133-235 48-153 (189)
7 3o0z_A RHO-associated protein 97.3 0.034 1.2E-06 51.6 20.3 145 111-277 4-153 (168)
8 2dfs_A Myosin-5A; myosin-V, in 96.8 0.028 9.7E-07 64.8 17.8 30 236-265 1020-1049(1080)
9 2dfs_A Myosin-5A; myosin-V, in 96.7 0.054 1.8E-06 62.5 19.2 128 148-288 921-1051(1080)
10 3vkg_A Dynein heavy chain, cyt 96.6 0.4 1.4E-05 61.0 26.7 101 236-344 2011-2111(3245)
11 3vkg_A Dynein heavy chain, cyt 96.2 0.8 2.8E-05 58.3 26.2 89 190-279 2014-2103(3245)
12 3o0z_A RHO-associated protein 96.1 0.56 1.9E-05 43.5 18.6 66 151-216 65-130 (168)
13 2efr_A General control protein 95.6 1.3 4.6E-05 40.5 20.0 122 97-225 26-147 (155)
14 2fxo_A Myosin heavy chain, car 95.3 1.2 4.1E-05 39.0 16.9 106 111-223 11-116 (129)
15 1x79_B RAB GTPase binding effe 95.2 0.1 3.5E-06 45.6 9.3 29 297-325 78-106 (112)
16 3ol1_A Vimentin; structural ge 94.6 0.57 2E-05 40.7 12.6 38 150-187 64-101 (119)
17 2jee_A YIIU; FTSZ, septum, coi 94.2 0.31 1.1E-05 40.3 9.3 50 236-285 24-73 (81)
18 3tnu_B Keratin, type II cytosk 94.1 1.1 3.9E-05 39.0 13.5 86 126-214 35-120 (129)
19 2efr_A General control protein 94.0 3.6 0.00012 37.6 23.3 25 139-163 26-50 (155)
20 2jee_A YIIU; FTSZ, septum, coi 93.8 0.46 1.6E-05 39.3 9.6 63 137-199 9-78 (81)
21 3tnu_A Keratin, type I cytoske 93.6 1 3.5E-05 39.5 12.4 78 134-214 45-122 (131)
22 3q8t_A Beclin-1; autophagy, AT 93.4 2.1 7.1E-05 36.0 13.3 78 177-254 5-82 (96)
23 3swk_A Vimentin; cytoskeleton, 92.4 1.4 4.6E-05 36.5 10.6 54 156-209 29-82 (86)
24 3u59_A Tropomyosin beta chain; 92.2 3.9 0.00013 34.3 13.5 44 178-221 11-54 (101)
25 3s4r_A Vimentin; alpha-helix, 92.0 2.1 7.1E-05 35.8 11.4 83 114-212 10-92 (93)
26 3swk_A Vimentin; cytoskeleton, 91.5 2.6 9E-05 34.7 11.4 75 114-188 8-82 (86)
27 3u1c_A Tropomyosin alpha-1 cha 91.2 5.1 0.00018 33.7 13.2 60 87-146 4-63 (101)
28 3ol1_A Vimentin; structural ge 91.1 6 0.0002 34.2 13.8 88 109-210 16-103 (119)
29 3bas_A Myosin heavy chain, str 90.8 3 0.0001 34.4 11.1 60 111-170 12-71 (89)
30 2v66_B Nuclear distribution pr 90.3 7.7 0.00026 33.7 13.6 91 110-214 7-101 (111)
31 3q8t_A Beclin-1; autophagy, AT 89.0 9.2 0.00032 32.0 14.1 46 116-161 7-52 (96)
32 2v66_B Nuclear distribution pr 88.9 11 0.00037 32.7 14.9 66 114-179 36-101 (111)
33 3bas_A Myosin heavy chain, str 88.1 6.4 0.00022 32.4 11.2 69 152-220 18-86 (89)
34 3hnw_A Uncharacterized protein 88.1 6.4 0.00022 35.1 11.9 20 80-100 28-47 (138)
35 2ocy_A RAB guanine nucleotide 88.0 16 0.00054 33.4 19.6 29 191-219 52-80 (154)
36 3ghg_A Fibrinogen alpha chain; 87.5 9.1 0.00031 41.2 14.4 55 231-285 107-164 (562)
37 2no2_A HIP-I, huntingtin-inter 87.1 13 0.00046 31.7 15.4 78 143-223 24-101 (107)
38 2ocy_A RAB guanine nucleotide 87.0 18 0.00062 33.0 17.8 76 107-186 14-89 (154)
39 2v4h_A NF-kappa-B essential mo 86.4 8.7 0.0003 33.4 11.3 46 268-321 63-108 (110)
40 3oja_A Leucine-rich immune mol 86.4 8.1 0.00028 39.6 13.3 43 178-220 423-465 (487)
41 3tnu_B Keratin, type II cytosk 86.1 4.1 0.00014 35.5 9.4 58 228-285 10-68 (129)
42 3hnw_A Uncharacterized protein 85.9 5.2 0.00018 35.6 10.1 8 154-161 38-45 (138)
43 2v4h_A NF-kappa-B essential mo 85.1 4.7 0.00016 35.0 9.0 78 207-285 27-108 (110)
44 1z2t_A Anchor peptide Ser65-Le 85.1 0.3 1E-05 31.6 1.2 13 452-464 4-16 (26)
45 1gk4_A Vimentin; intermediate 84.6 13 0.00045 30.2 11.1 68 144-214 4-71 (84)
46 3tnu_A Keratin, type I cytoske 84.5 4 0.00014 35.7 8.5 56 228-283 12-68 (131)
47 3cvf_A Homer-3, homer protein 82.1 4.8 0.00016 33.1 7.4 53 152-204 24-76 (79)
48 1m1j_B Fibrinogen beta chain; 82.1 32 0.0011 36.4 15.7 10 59-68 76-85 (464)
49 3trt_A Vimentin; cytoskeleton, 82.0 11 0.00039 29.6 9.6 48 226-273 28-76 (77)
50 1m1j_C Fibrinogen gamma chain; 81.9 10 0.00034 39.5 11.6 99 174-285 25-123 (409)
51 3a7p_A Autophagy protein 16; c 81.9 11 0.00039 34.3 10.5 34 196-229 95-128 (152)
52 3s4r_A Vimentin; alpha-helix, 81.9 16 0.00054 30.4 10.7 35 153-187 54-88 (93)
53 3oja_A Leucine-rich immune mol 81.6 48 0.0016 33.8 16.6 49 209-258 433-482 (487)
54 1l8d_A DNA double-strand break 81.6 22 0.00074 29.5 13.0 87 191-277 11-102 (112)
55 1x79_B RAB GTPase binding effe 81.2 27 0.00091 30.4 13.4 76 129-214 8-83 (112)
56 2eqb_B RAB guanine nucleotide 80.3 13 0.00044 31.7 9.6 79 247-333 6-92 (97)
57 3mq9_A Bone marrow stromal ant 79.4 53 0.0018 33.3 16.0 101 173-280 370-470 (471)
58 4gkw_A Spindle assembly abnorm 79.1 36 0.0012 30.6 20.7 48 236-283 116-163 (167)
59 3mq7_A Bone marrow stromal ant 78.6 34 0.0012 30.0 14.0 81 124-214 29-109 (121)
60 3cve_A Homer protein homolog 1 78.0 17 0.00059 29.3 9.3 60 195-255 5-65 (72)
61 1m1j_B Fibrinogen beta chain; 78.0 58 0.002 34.4 16.0 19 109-127 96-114 (464)
62 2zqm_A Prefoldin beta subunit 76.4 31 0.0011 28.5 11.1 44 236-279 67-110 (117)
63 3nmd_A CGMP dependent protein 75.7 6.5 0.00022 31.8 6.2 46 236-281 23-68 (72)
64 1wt6_A Myotonin-protein kinase 75.5 9.1 0.00031 31.6 7.1 48 236-283 28-75 (81)
65 3iox_A AGI/II, PA; alpha helix 74.0 76 0.0026 33.9 15.5 94 116-209 5-99 (497)
66 1ic2_A Tropomyosin alpha chain 73.2 34 0.0012 27.4 10.7 16 141-156 13-28 (81)
67 1x8y_A Lamin A/C; structural p 72.5 21 0.00072 29.1 8.8 62 149-213 11-72 (86)
68 1go4_E MAD1 (mitotic arrest de 72.2 9.6 0.00033 32.5 6.8 82 246-329 12-94 (100)
69 3he5_B Synzip2; heterodimeric 72.1 13 0.00043 27.5 6.4 41 128-168 11-51 (52)
70 2b9c_A Striated-muscle alpha t 71.8 37 0.0013 30.5 11.0 47 121-167 53-99 (147)
71 3a7p_A Autophagy protein 16; c 71.5 51 0.0017 30.1 11.8 37 178-214 98-134 (152)
72 1wt6_A Myotonin-protein kinase 70.8 15 0.00052 30.3 7.4 55 155-209 10-64 (81)
73 3ghg_A Fibrinogen alpha chain; 70.6 22 0.00074 38.3 10.5 40 300-339 114-153 (562)
74 3cvf_A Homer-3, homer protein 70.5 20 0.00067 29.4 8.0 62 194-256 10-72 (79)
75 3he5_B Synzip2; heterodimeric 69.8 9.4 0.00032 28.2 5.3 43 89-131 7-49 (52)
76 3cve_A Homer protein homolog 1 69.4 43 0.0015 27.0 9.7 53 152-204 18-70 (72)
77 2oqq_A Transcription factor HY 68.9 11 0.00038 27.5 5.5 39 239-277 3-41 (42)
78 1f5n_A Interferon-induced guan 68.6 1.3E+02 0.0046 32.4 21.0 28 206-233 514-545 (592)
79 3qh9_A Liprin-beta-2; coiled-c 66.7 28 0.00095 28.7 8.1 31 187-217 23-53 (81)
80 1fxk_A Prefoldin; archaeal pro 66.5 51 0.0018 26.8 10.5 40 237-276 63-102 (107)
81 3mq7_A Bone marrow stromal ant 65.8 59 0.002 28.5 10.5 45 184-228 58-102 (121)
82 2e7s_A RAB guanine nucleotide 65.7 10 0.00034 34.0 5.8 10 267-276 103-112 (135)
83 3mov_A Lamin-B1; LMNB1, B-type 65.6 25 0.00085 29.4 7.9 63 149-214 20-82 (95)
84 1ic2_A Tropomyosin alpha chain 64.5 53 0.0018 26.2 10.8 29 112-140 5-33 (81)
85 3c9i_A Tail needle protein GP2 63.2 82 0.0028 30.2 11.8 22 45-66 13-34 (242)
86 2zqm_A Prefoldin beta subunit 63.1 63 0.0021 26.6 11.2 42 243-284 67-108 (117)
87 1deq_A Fibrinogen (alpha chain 62.2 1.3E+02 0.0045 31.1 14.0 12 58-69 42-53 (390)
88 1qsd_A Protein (beta-tubulin b 62.0 28 0.00094 29.8 7.7 35 196-230 10-46 (106)
89 3c9i_A Tail needle protein GP2 61.7 1.2E+02 0.004 29.2 12.6 72 151-229 80-151 (242)
90 3ghg_C Fibrinogen gamma chain; 61.6 77 0.0026 33.0 12.4 93 174-279 25-117 (411)
91 1wle_A Seryl-tRNA synthetase; 60.7 36 0.0012 36.1 10.0 41 247-287 117-157 (501)
92 1x8y_A Lamin A/C; structural p 60.6 46 0.0016 27.1 8.5 75 199-277 5-80 (86)
93 1go4_E MAD1 (mitotic arrest de 60.1 21 0.00071 30.5 6.5 33 128-160 13-45 (100)
94 3jsv_C NF-kappa-B essential mo 60.1 31 0.0011 29.2 7.4 26 297-322 62-87 (94)
95 2w6a_A ARF GTPase-activating p 59.5 31 0.001 27.0 6.7 35 192-226 22-56 (63)
96 2e7s_A RAB guanine nucleotide 59.0 27 0.00092 31.3 7.3 50 142-191 33-82 (135)
97 1joc_A EEA1, early endosomal a 58.8 27 0.00093 30.2 7.3 42 224-265 3-44 (125)
98 1m1j_C Fibrinogen gamma chain; 58.0 1.5E+02 0.0053 30.6 13.9 6 63-68 18-23 (409)
99 3qne_A Seryl-tRNA synthetase, 56.3 30 0.001 36.7 8.4 68 214-286 43-111 (485)
100 1ses_A Seryl-tRNA synthetase; 56.3 54 0.0018 33.8 10.2 74 210-289 34-107 (421)
101 3a7o_A Autophagy protein 16; c 56.2 69 0.0024 25.9 8.4 42 177-218 33-74 (75)
102 3uux_B Mitochondrial division 56.1 79 0.0027 30.8 10.6 72 116-187 152-223 (242)
103 1d7m_A Cortexillin I; coiled-c 55.9 92 0.0032 26.3 15.2 28 141-168 18-45 (101)
104 2dq0_A Seryl-tRNA synthetase; 55.8 33 0.0011 35.8 8.6 39 249-287 72-110 (455)
105 1fxk_A Prefoldin; archaeal pro 55.2 83 0.0028 25.5 11.0 40 244-283 63-102 (107)
106 3cl3_D NF-kappa-B essential mo 55.2 41 0.0014 29.9 7.7 99 120-235 9-107 (130)
107 2i1j_A Moesin; FERM, coiled-co 55.2 8.1 0.00028 41.6 3.9 15 296-310 511-525 (575)
108 3qh9_A Liprin-beta-2; coiled-c 55.0 82 0.0028 25.9 8.9 36 189-224 39-74 (81)
109 1gd2_E Transcription factor PA 54.8 27 0.00094 27.8 6.0 43 242-284 25-67 (70)
110 3i00_A HIP-I, huntingtin-inter 54.0 1.1E+02 0.0037 26.6 10.2 13 195-207 104-116 (120)
111 3vp9_A General transcriptional 52.8 18 0.00062 30.5 4.8 47 138-187 40-86 (92)
112 3mxz_A Tubulin-specific chaper 52.8 1.1E+02 0.0039 26.4 13.2 69 195-263 13-84 (116)
113 3mq9_A Bone marrow stromal ant 52.4 2E+02 0.0068 29.0 15.8 110 142-259 360-470 (471)
114 2zxx_A Geminin; coiled-coil, c 50.2 18 0.00062 29.7 4.3 41 289-329 26-67 (79)
115 3ghg_B Fibrinogen beta chain; 49.5 2.4E+02 0.0082 29.9 13.7 9 60-68 72-80 (461)
116 3vmx_A Voltage-gated hydrogen 49.5 58 0.002 24.4 6.6 41 238-278 3-43 (48)
117 2dq3_A Seryl-tRNA synthetase; 49.1 32 0.0011 35.5 7.1 65 214-286 40-108 (425)
118 2xv5_A Lamin-A/C; structural p 49.0 1E+02 0.0035 24.7 8.5 55 111-165 3-57 (74)
119 1h7c_A Tubulin-specific chaper 49.0 1.2E+02 0.0042 25.7 11.7 67 192-258 9-78 (108)
120 2xnx_M M protein, M1-BC1; cell 48.8 54 0.0018 29.7 7.6 32 179-210 69-100 (146)
121 4h22_A Leucine-rich repeat fli 48.6 1.3E+02 0.0044 25.8 10.3 63 133-209 15-77 (103)
122 3efg_A Protein SLYX homolog; x 48.1 70 0.0024 25.8 7.5 48 117-164 11-58 (78)
123 2w83_C C-JUN-amino-terminal ki 48.0 1.1E+02 0.0038 24.9 9.1 63 121-183 10-72 (77)
124 4e61_A Protein BIM1; EB1-like 47.5 63 0.0022 27.8 7.5 53 110-162 8-60 (106)
125 1fxk_C Protein (prefoldin); ar 47.3 1.3E+02 0.0045 25.5 12.2 40 115-154 3-42 (133)
126 1l8d_A DNA double-strand break 47.2 1.2E+02 0.004 24.9 12.8 20 115-134 5-24 (112)
127 3iv1_A Tumor susceptibility ge 46.9 1.2E+02 0.004 24.8 9.9 45 236-280 29-73 (78)
128 3lss_A Seryl-tRNA synthetase; 46.8 78 0.0027 33.5 9.8 35 252-286 109-144 (484)
129 2yy0_A C-MYC-binding protein; 46.7 31 0.001 26.0 4.8 32 303-334 19-50 (53)
130 1ci6_A Transcription factor AT 46.6 58 0.002 25.0 6.6 35 189-223 22-56 (63)
131 1p9i_A Cortexillin I/GCN4 hybr 46.4 21 0.00072 23.9 3.4 28 306-333 2-29 (31)
132 2lw1_A ABC transporter ATP-bin 46.1 1.2E+02 0.004 24.5 9.3 54 149-203 30-83 (89)
133 3jsv_C NF-kappa-B essential mo 45.7 1.4E+02 0.0047 25.2 9.2 16 201-216 65-80 (94)
134 2xnx_M M protein, M1-BC1; cell 45.6 79 0.0027 28.6 8.2 15 111-125 31-45 (146)
135 3nmd_A CGMP dependent protein 45.6 71 0.0024 25.8 7.0 17 124-140 44-60 (72)
136 2w83_C C-JUN-amino-terminal ki 45.2 81 0.0028 25.8 7.3 44 245-288 29-72 (77)
137 4h22_A Leucine-rich repeat fli 45.2 1.2E+02 0.0042 25.9 8.9 22 258-279 21-42 (103)
138 1t2k_D Cyclic-AMP-dependent tr 43.9 63 0.0021 24.4 6.3 34 247-280 23-56 (61)
139 3swf_A CGMP-gated cation chann 43.8 94 0.0032 25.2 7.5 48 173-223 4-51 (74)
140 1gk4_A Vimentin; intermediate 43.6 1.3E+02 0.0043 24.2 10.5 74 199-276 3-77 (84)
141 4dzn_A Coiled-coil peptide CC- 43.3 46 0.0016 22.6 4.7 27 184-210 3-29 (33)
142 2w6a_A ARF GTPase-activating p 43.0 92 0.0031 24.4 7.0 44 207-251 16-60 (63)
143 3m48_A General control protein 42.7 32 0.0011 23.9 3.9 28 307-334 4-31 (33)
144 3mov_A Lamin-B1; LMNB1, B-type 42.5 1.5E+02 0.005 24.7 9.5 52 111-162 35-86 (95)
145 4gkw_A Spindle assembly abnorm 42.3 1.9E+02 0.0066 26.0 17.9 99 109-214 56-157 (167)
146 2oqq_A Transcription factor HY 41.5 75 0.0026 23.2 5.9 20 193-212 20-39 (42)
147 2wt7_A Proto-oncogene protein 41.5 73 0.0025 24.3 6.4 34 247-280 24-57 (63)
148 1gk6_A Vimentin; intermediate 40.1 78 0.0027 24.0 6.3 48 116-163 3-50 (59)
149 3ghg_B Fibrinogen beta chain; 40.0 3.6E+02 0.012 28.5 14.7 42 174-215 82-123 (461)
150 3swy_A Cyclic nucleotide-gated 39.2 1.1E+02 0.0039 22.5 6.9 44 173-219 2-45 (46)
151 3s9g_A Protein hexim1; cyclin 38.6 1.2E+02 0.0042 25.9 7.8 51 229-279 34-91 (104)
152 4etp_A Kinesin-like protein KA 38.4 75 0.0026 32.6 7.9 49 115-163 5-53 (403)
153 2zdi_C Prefoldin subunit alpha 38.2 59 0.002 28.5 6.2 38 112-149 8-48 (151)
154 1wlq_A Geminin; coiled-coil; 2 37.1 33 0.0011 28.4 4.0 36 289-324 30-66 (83)
155 1ik9_A DNA repair protein XRCC 36.4 2.8E+02 0.0095 26.1 12.3 41 116-156 135-175 (213)
156 1lwu_C Fibrinogen gamma chain; 36.3 84 0.0029 31.6 7.6 28 114-141 6-33 (323)
157 2oxj_A Hybrid alpha/beta pepti 36.3 60 0.002 22.7 4.5 28 306-333 4-31 (34)
158 3a2a_A Voltage-gated hydrogen 35.8 81 0.0028 24.3 5.6 41 238-278 10-50 (58)
159 1deq_A Fibrinogen (alpha chain 35.8 3.9E+02 0.013 27.7 15.4 8 326-333 238-245 (390)
160 2i1j_A Moesin; FERM, coiled-co 35.4 40 0.0014 36.2 5.4 95 115-209 351-445 (575)
161 3s84_A Apolipoprotein A-IV; fo 35.1 3.2E+02 0.011 26.5 24.3 190 111-328 20-223 (273)
162 3he5_A Synzip1; heterodimeric 34.8 1E+02 0.0035 22.5 5.7 10 265-274 36-45 (49)
163 4e61_A Protein BIM1; EB1-like 34.3 91 0.0031 26.8 6.4 26 205-230 19-44 (106)
164 2no2_A HIP-I, huntingtin-inter 34.0 2.2E+02 0.0074 24.2 14.3 34 189-222 7-40 (107)
165 1uo4_A General control protein 33.7 53 0.0018 22.9 3.9 28 307-334 5-32 (34)
166 1wle_A Seryl-tRNA synthetase; 33.5 1.7E+02 0.006 30.9 9.9 38 240-277 117-154 (501)
167 1uix_A RHO-associated kinase; 33.3 1.9E+02 0.0064 23.2 9.8 24 136-159 6-29 (71)
168 2dq3_A Seryl-tRNA synthetase; 32.8 1.9E+02 0.0066 29.6 9.9 75 252-331 29-103 (425)
169 1uii_A Geminin; human, DNA rep 32.7 74 0.0025 26.3 5.4 36 289-324 38-74 (83)
170 1jnm_A Proto-oncogene C-JUN; B 32.6 69 0.0024 24.3 4.9 34 246-279 22-55 (62)
171 3a7o_A Autophagy protein 16; c 32.4 1.9E+02 0.0065 23.3 7.5 25 108-132 13-37 (75)
172 3c3g_A Alpha/beta peptide with 32.3 72 0.0025 22.1 4.4 28 306-333 3-30 (33)
173 2yy0_A C-MYC-binding protein; 32.1 82 0.0028 23.6 5.2 27 197-223 19-45 (53)
174 2eqb_B RAB guanine nucleotide 32.0 2.3E+02 0.008 23.9 12.4 87 178-278 7-94 (97)
175 3c3f_A Alpha/beta peptide with 31.0 78 0.0027 22.1 4.4 28 306-333 4-31 (34)
176 3htk_A Structural maintenance 30.4 1.6E+02 0.0056 21.6 8.1 45 116-160 8-52 (60)
177 1deb_A APC protein, adenomatou 30.2 1.8E+02 0.0061 22.1 7.0 42 240-281 11-52 (54)
178 2p22_A Suppressor protein STP2 30.1 3.3E+02 0.011 25.1 10.6 65 213-277 14-87 (174)
179 2dq0_A Seryl-tRNA synthetase; 29.8 1.9E+02 0.0065 30.1 9.3 37 241-277 71-107 (455)
180 2xdj_A Uncharacterized protein 29.8 2.3E+02 0.0077 23.1 9.3 9 154-162 5-13 (83)
181 4emc_A Monopolin complex subun 29.5 2E+02 0.0068 27.1 8.4 27 115-141 22-48 (190)
182 1kd8_A GABH AIV, GCN4 acid bas 29.4 1.1E+02 0.0038 21.6 5.0 30 137-166 4-33 (36)
183 4etp_A Kinesin-like protein KA 29.3 1.1E+02 0.0038 31.3 7.3 11 199-209 47-57 (403)
184 1t6f_A Geminin; coiled-coil, c 29.0 50 0.0017 23.4 3.2 29 296-324 7-35 (37)
185 1hjb_A Ccaat/enhancer binding 28.9 1.4E+02 0.0049 24.5 6.6 35 189-223 35-69 (87)
186 3iv1_A Tumor susceptibility ge 28.8 2.4E+02 0.0081 23.0 8.9 12 115-126 20-31 (78)
187 1nkp_B MAX protein, MYC proto- 28.8 52 0.0018 26.2 3.8 30 249-278 50-79 (83)
188 3qne_A Seryl-tRNA synthetase, 28.7 2.3E+02 0.008 29.9 9.8 74 193-277 36-109 (485)
189 3i00_A HIP-I, huntingtin-inter 28.2 2.9E+02 0.01 23.9 10.4 14 177-190 16-29 (120)
190 3ghg_C Fibrinogen gamma chain; 28.0 5.3E+02 0.018 26.8 14.5 29 135-163 39-67 (411)
191 2l5g_B Putative uncharacterize 27.9 1.1E+02 0.0039 22.2 5.0 32 173-204 6-37 (42)
192 2dgc_A Protein (GCN4); basic d 27.9 80 0.0027 24.3 4.6 32 245-276 29-60 (63)
193 2hy6_A General control protein 27.8 86 0.0029 21.9 4.2 28 306-333 4-31 (34)
194 2wvr_A Geminin; DNA replicatio 27.5 1E+02 0.0034 29.5 6.0 43 289-331 107-153 (209)
195 1gd2_E Transcription factor PA 27.5 1.1E+02 0.0037 24.3 5.4 21 201-221 47-67 (70)
196 1gmj_A ATPase inhibitor; coile 27.1 1.6E+02 0.0053 24.4 6.4 16 115-130 60-75 (84)
197 2wuj_A Septum site-determining 26.2 64 0.0022 24.3 3.7 28 193-220 30-57 (57)
198 3m91_A Proteasome-associated A 26.2 1.8E+02 0.0062 21.8 6.1 35 154-188 8-42 (51)
199 1fxk_C Protein (prefoldin); ar 26.2 2.9E+02 0.01 23.2 13.8 39 130-168 4-42 (133)
200 3m9b_A Proteasome-associated A 25.7 63 0.0021 31.7 4.4 11 407-417 155-165 (251)
201 2wuj_A Septum site-determining 25.1 59 0.002 24.6 3.3 28 305-332 29-56 (57)
202 3ra3_A P1C; coiled coil domain 25.1 43 0.0015 22.0 2.1 18 205-222 8-25 (28)
203 3uux_B Mitochondrial division 24.9 4.8E+02 0.016 25.4 10.4 16 80-95 75-92 (242)
204 3c3g_A Alpha/beta peptide with 24.7 1.1E+02 0.0039 21.2 4.3 26 137-162 3-28 (33)
205 3okq_A BUD site selection prot 24.7 3.8E+02 0.013 24.0 14.5 66 133-200 13-78 (141)
206 4emc_A Monopolin complex subun 24.6 3.8E+02 0.013 25.2 9.3 36 94-129 22-57 (190)
207 4fla_A Regulation of nuclear P 23.9 3.9E+02 0.013 23.9 9.1 45 85-129 79-123 (152)
208 2k48_A Nucleoprotein; viral pr 23.9 2.4E+02 0.0083 24.2 7.2 58 228-285 30-100 (107)
209 2zdi_C Prefoldin subunit alpha 23.9 3.6E+02 0.012 23.4 10.2 98 127-224 9-139 (151)
210 3he4_A Synzip6; heterodimeric 23.9 1.4E+02 0.0049 22.2 5.0 36 232-267 16-52 (56)
211 3s9g_A Protein hexim1; cyclin 23.6 3.5E+02 0.012 23.1 8.5 14 212-225 66-79 (104)
212 1kd8_B GABH BLL, GCN4 acid bas 23.5 1.6E+02 0.0056 20.7 5.0 29 137-165 4-32 (36)
213 1nkp_A C-MYC, MYC proto-oncoge 23.1 2.1E+02 0.0072 23.2 6.6 62 269-330 18-86 (88)
214 1gk6_A Vimentin; intermediate 23.0 2.4E+02 0.0084 21.2 6.7 41 174-214 5-45 (59)
215 1kd8_B GABH BLL, GCN4 acid bas 22.7 2.1E+02 0.0071 20.2 5.5 32 248-279 3-34 (36)
216 1m1j_A Fibrinogen alpha subuni 22.6 7.2E+02 0.024 26.5 15.1 15 296-310 177-191 (491)
217 1j1d_B Troponin T, TNT; THIN f 22.6 3.6E+02 0.012 22.9 8.6 61 89-167 29-89 (106)
218 1dh3_A Transcription factor CR 22.2 94 0.0032 23.3 3.9 31 305-335 24-54 (55)
219 2wt7_B Transcription factor MA 22.1 3.4E+02 0.012 22.5 10.0 15 149-163 36-50 (90)
220 1gu4_A CAAT/enhancer binding p 21.9 2.2E+02 0.0074 23.0 6.3 35 189-223 35-69 (78)
221 1ses_A Seryl-tRNA synthetase; 21.8 3.8E+02 0.013 27.5 9.7 28 196-223 70-97 (421)
222 1vcs_A Vesicle transport throu 21.8 3.1E+02 0.011 22.6 7.5 54 134-193 38-91 (102)
223 1joc_A EEA1, early endosomal a 21.8 2.4E+02 0.0083 24.1 7.1 39 183-221 4-42 (125)
224 1jnm_A Proto-oncogene C-JUN; B 21.6 1.7E+02 0.0059 22.0 5.4 22 194-215 26-47 (62)
225 1uix_A RHO-associated kinase; 21.4 3.2E+02 0.011 21.9 8.2 35 111-145 2-36 (71)
226 2z5i_A TM, general control pro 21.2 1.4E+02 0.0047 22.3 4.7 30 113-142 12-41 (52)
227 2xv5_A Lamin-A/C; structural p 21.2 3E+02 0.01 21.9 6.9 36 176-211 12-47 (74)
228 3tul_A Cell invasion protein S 21.1 4.7E+02 0.016 23.8 9.3 101 109-220 16-123 (158)
229 2wq1_A General control protein 20.9 1.5E+02 0.0052 20.6 4.3 26 137-162 3-28 (33)
230 1kd8_A GABH AIV, GCN4 acid bas 20.8 1.8E+02 0.006 20.6 4.7 31 249-279 4-34 (36)
231 1gk7_A Vimentin; intermediate 20.8 97 0.0033 22.0 3.5 30 298-327 5-37 (39)
232 2l5g_B Putative uncharacterize 20.8 1.6E+02 0.0056 21.4 4.7 33 186-218 5-37 (42)
233 1hjb_A Ccaat/enhancer binding 20.8 1.9E+02 0.0066 23.8 5.9 40 102-141 32-71 (87)
234 3c3f_A Alpha/beta peptide with 20.7 1.5E+02 0.0052 20.6 4.3 26 137-162 4-29 (34)
235 2wq1_A General control protein 20.6 1.7E+02 0.0058 20.3 4.5 27 306-332 3-29 (33)
236 3u06_A Protein claret segregat 20.6 2.6E+02 0.0089 28.7 8.2 47 118-164 8-54 (412)
237 2qyw_A Vesicle transport throu 20.5 3.6E+02 0.012 22.2 9.5 52 134-191 49-100 (102)
238 1zxa_A CGMP-dependent protein 20.4 1.6E+02 0.0055 23.3 5.1 39 246-284 18-56 (67)
239 3he4_A Synzip6; heterodimeric 20.4 1.9E+02 0.0065 21.6 5.1 32 109-140 20-51 (56)
240 1s1c_X RHO-associated, coiled- 20.3 3.3E+02 0.011 21.7 9.3 28 110-137 3-30 (71)
241 3m9b_A Proteasome-associated A 20.3 91 0.0031 30.5 4.4 39 93-131 55-93 (251)
242 4dnd_A Syntaxin-10, SYN10; str 20.3 4.3E+02 0.015 23.0 10.6 86 171-260 33-126 (130)
243 1nkp_A C-MYC, MYC proto-oncoge 20.2 1.4E+02 0.0048 24.2 4.9 30 250-279 56-85 (88)
244 2pnv_A Small conductance calci 20.2 1.4E+02 0.0049 21.6 4.4 31 255-285 11-41 (43)
245 3vp9_A General transcriptional 20.1 3.8E+02 0.013 22.4 8.3 75 89-166 11-86 (92)
246 1uo4_A General control protein 20.1 1.6E+02 0.0054 20.6 4.3 27 137-163 4-30 (34)
247 1nlw_A MAD protein, MAX dimeri 20.1 1.3E+02 0.0045 24.1 4.6 30 248-277 49-78 (80)
248 1d7m_A Cortexillin I; coiled-c 20.0 3.9E+02 0.013 22.4 15.6 49 117-165 8-56 (101)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.06 E-value=4e-06 Score=76.60 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=55.1
Q ss_pred HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 169 (475)
Q Consensus 90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q 169 (475)
+...+..|..+....-..-.-++..+..+..++..+...+..+...+..+..+...+-.....++..+..+.........
T Consensus 18 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (284)
T 1c1g_A 18 ALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE 97 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333333344444444444444444444444444444444444444444444444444444444444
Q ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011909 170 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE 218 (475)
Q Consensus 170 kea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEe 218 (475)
....+...+..+...+.....++..+...+..+......+...+..+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (284)
T 1c1g_A 98 ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4444444444444444444444444444433333333333333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.56 E-value=1.5e-07 Score=108.48 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 011909 84 REAMAILEETVKH 96 (475)
Q Consensus 84 ~~~~~~~eeti~~ 96 (475)
+.|.-+++-.+|.
T Consensus 818 ~~a~~~iQ~~~r~ 830 (1184)
T 1i84_S 818 LESIFCIQYNVRS 830 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3454445554443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.47 E-value=3.4e-07 Score=105.44 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 190 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~q 190 (475)
++..+..|+.++..+...+.........++.+...+......++..+.+++............+..++..++.++.....
T Consensus 883 le~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~ 962 (1184)
T 1i84_S 883 LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444455555555555555555555444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 191 KEAALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
++..+..++..+..+...+..++..++.++.
T Consensus 963 eleele~~l~~l~~e~~~le~~l~~l~~el~ 993 (1184)
T 1i84_S 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993 (1184)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.54 E-value=0.013 Score=56.79 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011909 115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 154 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE 154 (475)
++.++.+|+.+.+.+..|..++..|+.+...+-.....+.
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~ 52 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE 52 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544444333333333333
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.49 E-value=0.015 Score=54.92 Aligned_cols=162 Identities=13% Similarity=0.168 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 142 QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 142 d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
......+....++..+.+|+ .++.+-++.|+.+|.++++.+.....+...+.-++..++.........
T Consensus 18 ~~~~~~q~~~~le~El~EFq---esSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e--------- 85 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQ---EGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ--------- 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 33334444444444444554 345666666777777776666666655555555555555444333221
Q ss_pred HHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 011909 222 LLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKD 300 (475)
Q Consensus 222 ~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~ 300 (475)
|. ..| .|+..|+.+...+..|+..|.+||-....+..........+..+...+...=...|+
T Consensus 86 --------~~-~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~al-------- 148 (189)
T 2v71_A 86 --------SY-KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAF-------- 148 (189)
T ss_dssp --------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred --------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------
Confidence 11 224 666677777777777888888888877777777777777777766665542223333
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ 336 (475)
Q Consensus 301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~ 336 (475)
|.++++. =+.|..+.|+|.++++||...|.-.
T Consensus 149 LE~El~E----Ke~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 149 LESELDE----KESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHHHHHH----HHHHHCCC-----------------
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334432 3355777888999999998866433
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.40 E-value=0.013 Score=55.35 Aligned_cols=100 Identities=11% Similarity=0.148 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 133 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK 212 (475)
Q Consensus 133 ~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~Lkqk 212 (475)
+.++.+++....++..+.+.+...+..++.+...... .+..++..|+.++.........+...+..|.-.|+.|..+
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~---e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA---QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3355555555555555555555555555554433222 2344566666666666666666666666666666666665
Q ss_pred HHhHHHHHHHH------HHhhhhhhhhhh
Q 011909 213 RASLEERLKLL------EADKDSWTQMES 235 (475)
Q Consensus 213 LasLEeKl~~L------kaERD~WLkkEI 235 (475)
..-+...+..+ -=||..||..|+
T Consensus 125 ~R~~~~SleD~e~kln~aiEr~alLE~El 153 (189)
T 2v71_A 125 KRATIMSLEDFEQRLNQAIERNAFLESEL 153 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444 224555555554
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.33 E-value=0.034 Score=51.63 Aligned_cols=145 Identities=16% Similarity=0.160 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 190 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~q 190 (475)
..+.|..|+.+|..+..++..-.++-..|+.....+.+..+.+|..+++|+.......-.+..|+.++..|+...+.=..
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888899999999999999999999999998877777777666666666665544222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHH---
Q 011909 191 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL--- 266 (475)
Q Consensus 191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~--- 266 (475)
--...... ...++.++.. |..|+ .++..++....++..|.+.+..||.+.+++.
T Consensus 84 ~r~q~se~--------------~~elq~ri~~--------L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~ 141 (168)
T 3o0z_A 84 DRGHDSEM--------------IGDLQARITS--------LQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDL 141 (168)
T ss_dssp HHHHHHHH--------------HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 22222222 2223222222 23444 4555666666777777777777777777666
Q ss_pred -HHHHHHHHHHH
Q 011909 267 -QENRQLKENVS 277 (475)
Q Consensus 267 -kEIqqLReqLd 277 (475)
=++..++..++
T Consensus 142 ~~eLKalQ~~~e 153 (168)
T 3o0z_A 142 NYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 55555555444
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.82 E-value=0.028 Score=64.78 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=15.4
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNL 265 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL 265 (475)
.|++.++.+..++..|+.++.+|+......
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555433333
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.72 E-value=0.054 Score=62.49 Aligned_cols=128 Identities=17% Similarity=0.199 Sum_probs=47.3
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQK---ISQLRDESAALNMKRASLEERLKLLE 224 (475)
Q Consensus 148 QkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~pe---iekL~~Ee~~LkqkLasLEeKl~~Lk 224 (475)
+....+|.+|.+|+............|.+++..++ ..+.++.+.|+.+ ++.+..+...++.++..+++++..|.
T Consensus 921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp ------------------------------CHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666666555555555555554444 2333444444332 23333333344444444444444433
Q ss_pred HhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 225 ADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 288 (475)
Q Consensus 225 aERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~ 288 (475)
.+... +.+....+...+..++ .+|++....|.++++.|+.+++++...+...+.
T Consensus 998 ~~~~~-------~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 998 KELHQ-------TQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 2222222333333333 355577777788888888888877766666444
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.58 E-value=0.4 Score=61.00 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=71.5
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKL 315 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL 315 (475)
.++..+...+.++...+.++...+.....+...++.|+.+.+.+..+-+.|+.+...| ...++++..++..|
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~--------~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV--------KNKVDRSIALLDNL 2082 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhh
Confidence 5666777777777777777777777777777777888777777777777766665544 45677888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 011909 316 ITENIELVEKVNDLSVKLDRQSVAAGLSS 344 (475)
Q Consensus 316 ~~enq~LeEe~neL~~~l~~~~~~~~~ss 344 (475)
-.|+.+=.+.+.+|..++...--+.=+++
T Consensus 2083 ~~Ek~RW~~~~~~l~~~~~~L~GD~LLaa 2111 (3245)
T 3vkg_A 2083 NSERGRWEQQSENFNTQMSTVVGDVVLAS 2111 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 88888888888887766655443433333
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.19 E-value=0.8 Score=58.34 Aligned_cols=89 Identities=12% Similarity=0.183 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 011909 190 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQE 268 (475)
Q Consensus 190 qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kE 268 (475)
.+++.++.++.....+-.....+++.+++++..|+++.+.-+ .|. .|+..+..-...+....+=+..|..++.-|.+.
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~-~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI-RETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 445555566666666666666667777777777777776633 344 666666666666666666677777777777777
Q ss_pred HHHHHHHHHHH
Q 011909 269 NRQLKENVSSL 279 (475)
Q Consensus 269 IqqLReqLdel 279 (475)
+..++.++..+
T Consensus 2093 ~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2093 SENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777666655
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.12 E-value=0.56 Score=43.52 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=30.8
Q ss_pred HhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909 151 ATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 216 (475)
Q Consensus 151 A~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL 216 (475)
..++-.+..|+...+.-...+....+.+.-|+..|.....++..+...+.++..++..|-.++..+
T Consensus 65 ~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 65 SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333443333333333344444444555555555555555555555555555554444444
No 13
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.60 E-value=1.3 Score=40.46 Aligned_cols=122 Identities=22% Similarity=0.191 Sum_probs=81.6
Q ss_pred hhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHH
Q 011909 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM 176 (475)
Q Consensus 97 l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee 176 (475)
+..+.+--..+=...+..|+.|+.++...-..++. |+.--..+.++...++.+|+.|.........+-...+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKs-------LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AER 98 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKS-------LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER 98 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444445555566666655554444444 56666677788888889999998888888777777777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011909 177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 225 (475)
Q Consensus 177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lka 225 (475)
.+..|+..|+...-++..-+.+|..+..+-...-..+.++.++.-.|-+
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~ 147 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLEN 147 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 7888888888888777777777777777766666666665555554433
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.33 E-value=1.2 Score=38.99 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 190 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~q 190 (475)
.++.++.+..++..++..+......++.|+..+..+++.+..+...+..-+ ..-+..++....|.........
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~-------~~l~e~EE~~~~L~~~k~eLe~ 83 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQ-------DNLADAEERCDQLIKNKIQLEA 83 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666666655554433222 2222333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 191 KEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
++..+..+++...+.+..|...-..++..+..|
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443333
No 15
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=95.18 E-value=0.1 Score=45.57 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=12.8
Q ss_pred hhhhchHHHHHHHhHHHHHHHHHHHHHHH
Q 011909 297 EQKDFSTQIEAAGALIDKLITENIELVEK 325 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL~~enq~LeEe 325 (475)
.-.+|...-+++|..|.+|+.+|..|.++
T Consensus 78 qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 78 QMAVLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 66688888899999999999999888864
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.60 E-value=0.57 Score=40.71 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=20.1
Q ss_pred HHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 150 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 150 kA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
.+.+|..|.-|+...+...-.+..|+.++..|+.|+..
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555554
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.15 E-value=0.31 Score=40.28 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=36.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
-|+..|..++..+..|..+..++...+..|..+++.|+.....|+.++..
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666677777777777777777777777787777777777665
No 18
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.08 E-value=1.1 Score=39.04 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 126 KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE 205 (475)
Q Consensus 126 k~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~E 205 (475)
+.++..+.-++..|+.+...+....+.+|..|.+++........ .+...|..|+.++.....+++....+|..|.+.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~---~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK---DARNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555666666666778888888888887655443 366667777777777777777777778777777
Q ss_pred HHHHHHHHH
Q 011909 206 SAALNMKRA 214 (475)
Q Consensus 206 e~~LkqkLa 214 (475)
.-.|...++
T Consensus 112 Kl~Ld~EIa 120 (129)
T 3tnu_B 112 KLALDVEIA 120 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777655444
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.00 E-value=3.6 Score=37.62 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909 139 LQRQNDLRMQKEATLEETIKQLRNQ 163 (475)
Q Consensus 139 Le~d~~~~LQkkA~lE~kIKdLe~~ 163 (475)
++.++..+-......+.++.+|+..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEee 50 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEE 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.76 E-value=0.46 Score=39.27 Aligned_cols=63 Identities=19% Similarity=0.309 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh-------hHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG-------LEMNIANLQSEKEFWLQKEAALEQKI 199 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~-------Lee~I~qLq~EI~~~~qEla~L~pei 199 (475)
.+|+.....++..++-++..|.+|+..+....+.... +..+..+|+.+...|...+..|..++
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666777777777777777777777665554444 66667777777777777776666554
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.62 E-value=1 Score=39.47 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 134 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 213 (475)
Q Consensus 134 etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL 213 (475)
-++..|+.+........+.+|..|.+++........ .+...|..|+.++.....+++....+|..|.+..-.|...+
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~---~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA---QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555678888888888887655443 35666777777777777777777777777777777665544
Q ss_pred H
Q 011909 214 A 214 (475)
Q Consensus 214 a 214 (475)
+
T Consensus 122 a 122 (131)
T 3tnu_A 122 A 122 (131)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=93.35 E-value=2.1 Score=36.04 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=52.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHH
Q 011909 177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ 254 (475)
Q Consensus 177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeE 254 (475)
.+..|+.++.....+.+.+..++..|..+...+...+..+++....|..+-..+.+.-......+.....+..+|..+
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888899999999999999988888888885544444444334444444443333333333
No 23
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.35 E-value=1.4 Score=36.46 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=28.2
Q ss_pred HHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 156 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 209 (475)
Q Consensus 156 kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~L 209 (475)
.+.+|+.+.+.-...+...+..+..|+...+...--...|+.+++.|.++-..|
T Consensus 29 ~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 29 DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555555555554444
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.17 E-value=3.9 Score=34.27 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=17.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
+..|+.+.+.+.-+-..+..++..+..........+.+|.-++.
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444444444444444444433333333333333333333
No 25
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=91.95 E-value=2.1 Score=35.83 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909 114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 193 (475)
Q Consensus 114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla 193 (475)
+|+.|=+.+.++..++..|+..=+.|+.+...+-+... +. -....+..|..|+..|+....+-+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~--------------~~--~~~~ye~~i~~Lr~~i~~~~~ek~ 73 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGK--------------SR--LGDLYEEEMRELRRQVDQLTNDKA 73 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--------------CC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777776666665555554443332211 11 112245556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011909 194 ALEQKISQLRDESAALNMK 212 (475)
Q Consensus 194 ~L~peiekL~~Ee~~Lkqk 212 (475)
.+..++..+......++.+
T Consensus 74 ~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 74 RVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6666666666555555544
No 26
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.55 E-value=2.6 Score=34.71 Aligned_cols=75 Identities=25% Similarity=0.287 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909 114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 188 (475)
Q Consensus 114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~ 188 (475)
.|..+..+...+.-++.-+......++..+..-+...+.+|..|.-|+..++..--.+..|+.++..|+.||...
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555556666666777899999999999999999999999999999999999874
No 27
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.21 E-value=5.1 Score=33.73 Aligned_cols=60 Identities=12% Similarity=0.300 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR 146 (475)
Q Consensus 87 ~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~ 146 (475)
|+.+-.-|.-|+.+.|--+-+=..++..++.+.........++..|+-.+.+++.+++.+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777777777777777777777777777777777777777777766654
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.07 E-value=6 Score=34.24 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909 109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 188 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~ 188 (475)
.+.+..|.+|+.+|+.+...-+.|...+.+++...+++-. +.+.-...+...+..|..|+..++..
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~--------------KyE~E~~~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE--------------KLQEEMLQREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHhhhcccHH
Confidence 4566677777777777777777777777666665555422 22222233444556666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALN 210 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~Lk 210 (475)
.--...|+.+++.|+++-..++
T Consensus 82 ~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 82 SLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666555555553
No 29
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.81 E-value=3 Score=34.41 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 170 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qk 170 (475)
.++.++.+..++..++-.+......++.|+..+..+++.+..+...+.+.+.........
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~ 71 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSK 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345555566666666666666666666666666666666655555533333333333333
No 30
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.33 E-value=7.7 Score=33.69 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHH
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEE----TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 185 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~e----tikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI 185 (475)
-|...+..|..+++.++.+...... ++..|+.+...+......+...|++|+..++.....+-.
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~------------ 74 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA------------ 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH------------
Confidence 3445555566666666655555443 355566666666666666666666666666655544221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 186 EFWLQKEAALEQKISQLRDESAALNMKRA 214 (475)
Q Consensus 186 ~~~~qEla~L~peiekL~~Ee~~LkqkLa 214 (475)
-..-++.++.+|...-+.++-|...+.
T Consensus 75 --t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 75 --TIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344455555555555555554444
No 31
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.03 E-value=9.2 Score=32.03 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR 161 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe 161 (475)
..|+.++..++.+.+.|-..+..|+.++...-..+..++.....|.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555544444444444444444443
No 32
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.92 E-value=11 Score=32.74 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHH
Q 011909 114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA 179 (475)
Q Consensus 114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~ 179 (475)
.|..|+.++..+...-..+...++.|+-.++++=+..-..-..+.||+.......++.+-|+.+|.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666655666666666666655555555554443
No 33
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=88.14 E-value=6.4 Score=32.40 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 152 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 152 ~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
.++..++.++.........+..++.+...|..++......++........|......|..++..+++++
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555555555555555577777777777777777777777776654
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.09 E-value=6.4 Score=35.09 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 011909 80 HLLQREAMAILEETVKHLRNE 100 (475)
Q Consensus 80 ~~~~~~~~~~~eeti~~l~~e 100 (475)
.+|++=| +.+.+.|+.+...
T Consensus 28 e~L~~vA-~~vd~km~ei~~~ 47 (138)
T 3hnw_A 28 EYLQRVA-SYINNKITEFNKE 47 (138)
T ss_dssp HHHHHHH-HHHHHHHHHHTTC
T ss_pred HHHHHHH-HHHHHHHHHHHhc
Confidence 3555555 6899999999865
No 35
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.97 E-value=16 Score=33.41 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011909 191 KEAALEQKISQLRDESAALNMKRASLEER 219 (475)
Q Consensus 191 Ela~L~peiekL~~Ee~~LkqkLasLEeK 219 (475)
+++.+.+++..|......-..+-...|..
T Consensus 52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~ 80 (154)
T 2ocy_A 52 ELSDRDDEVKRLREDIAKENELRTKAEEE 80 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444443333333333
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.47 E-value=9.1 Score=41.16 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=35.4
Q ss_pred hhhhh--chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHhhhhh
Q 011909 231 TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS-SLRSQLSS 285 (475)
Q Consensus 231 LkkEI--sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd-elqseiqs 285 (475)
...|+ .|++.|..++..+..-...|..|+..+..+..+|+.|...|+ +++...-.
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33555 567777777776666667777777777777777777776666 44443333
No 37
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=87.13 E-value=13 Score=31.72 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=50.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909 143 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 222 (475)
Q Consensus 143 ~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~ 222 (475)
..+..+.+..|+.++.+++..... +-..-...|..|+.++.....++..+...++.....+..|..++..++.....
T Consensus 24 ~~e~e~~k~eL~~~~~~~~~~~~~---k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~ 100 (107)
T 2no2_A 24 QVDLEREKKELEDSLERISDQGQR---KTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDS 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556655522221 22223456888899999999999888888888888888887777666554443
Q ss_pred H
Q 011909 223 L 223 (475)
Q Consensus 223 L 223 (475)
|
T Consensus 101 L 101 (107)
T 2no2_A 101 L 101 (107)
T ss_dssp H
T ss_pred H
Confidence 3
No 38
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.98 E-value=18 Score=33.03 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=31.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHH
Q 011909 107 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 186 (475)
Q Consensus 107 ~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~ 186 (475)
+.+.|++.+..++.++......+..|+..+.+ +..+...++..+..++.|.....-...++...+....++..|++
T Consensus 14 ~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~----~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElE 89 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQKAAIENYNQLKED----YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 89 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444433332222 22222333444444444444444444444434444444333333
No 39
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.40 E-value=8.7 Score=33.35 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHH
Q 011909 268 ENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIE 321 (475)
Q Consensus 268 EIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~ 321 (475)
.|.-|+.+++=.+..... +. ..-+++..+++.|...|..|+.++..
T Consensus 63 ~I~vLkaQv~IY~~DF~a-ER-------adREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQA-ER-------HAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcc-ch-------hhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 455565565544444333 11 23445555666666666666655543
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.39 E-value=8.1 Score=39.58 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
.++++.+++...+....+..++++++++++.++..+..+...+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3334444444444444444455555554444444444443333
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.13 E-value=4.1 Score=35.49 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=17.2
Q ss_pred hhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 228 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 228 D~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
+.|.+.-+ .++..+..+...+...+.++.++......|.-+++.++.+...+...+..
T Consensus 10 E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 10 ESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555555 55555555555555555555555555555555555544444444444333
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.88 E-value=5.2 Score=35.65 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 011909 154 EETIKQLR 161 (475)
Q Consensus 154 E~kIKdLe 161 (475)
..+|+++.
T Consensus 38 d~km~ei~ 45 (138)
T 3hnw_A 38 NNKITEFN 45 (138)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 33444444
No 43
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.13 E-value=4.7 Score=35.05 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=39.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHH---HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 207 AALNMKRASLEERLKLLEADKDSWTQMES-VSKE---TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 282 (475)
Q Consensus 207 ~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke---~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse 282 (475)
+.|..+|...|+.+..-+.+.+. |+.+| ..+. .|.-+.+++.--+.+-..=-..|..+..++..|.+++..++.+
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~ide-lk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDK-LKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444444333333333 33333 3333 4444444555444444455556666777777777777766666
Q ss_pred hhh
Q 011909 283 LSS 285 (475)
Q Consensus 283 iqs 285 (475)
...
T Consensus 106 ~~~ 108 (110)
T 2v4h_A 106 FNK 108 (110)
T ss_dssp HTT
T ss_pred HHh
Confidence 554
No 44
>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}
Probab=85.12 E-value=0.3 Score=31.61 Aligned_cols=13 Identities=62% Similarity=1.001 Sum_probs=11.8
Q ss_pred chhHHHHHHhhcc
Q 011909 452 PFRLVSFVAKYVS 464 (475)
Q Consensus 452 pfrlisfva~yvs 464 (475)
-|||+-||-|||-
T Consensus 4 gfrlvlfvkryvr 16 (26)
T 1z2t_A 4 GFRLVLFVKRYVR 16 (26)
T ss_dssp CTTHHHHHHHHTH
T ss_pred cEEEeeeHHHHHH
Confidence 4999999999994
No 45
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=84.61 E-value=13 Score=30.16 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 144 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 214 (475)
Q Consensus 144 ~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLa 214 (475)
..+....+.+|..|.+++....... ..+...|..|+.++.....+++....+|..|.+..-.|...++
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~~---~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVEA---ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444566778888888877765443 3366667777777777777777777777777777776655443
No 46
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.46 E-value=4 Score=35.71 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=12.5
Q ss_pred hhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 228 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 283 (475)
Q Consensus 228 D~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqsei 283 (475)
+.|.+.-+ .++..+..+...+...+.++.++......|.-+++.++.+...+...+
T Consensus 12 E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 12 EEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34544444 455555555555555555555544444444444444444444443333
No 47
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=82.15 E-value=4.8 Score=33.07 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 152 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 204 (475)
Q Consensus 152 ~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~ 204 (475)
.+|.+|..|+.......+++..+..+++++-.-.+-++.++..+.-.+.+|-.
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 46778888888888888888888888999988888888888888777777643
No 48
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=82.06 E-value=32 Score=36.36 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=7.6
Q ss_pred ccCCCCCCCc
Q 011909 59 DADRHQSNGA 68 (475)
Q Consensus 59 ~~~~~~~~~~ 68 (475)
++--+||+|=
T Consensus 76 ~~G~~CPTtC 85 (464)
T 1m1j_B 76 ELGVLCPTGC 85 (464)
T ss_dssp TTCEEEECTT
T ss_pred CccCcCCCcc
Confidence 5777899983
No 49
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=81.98 E-value=11 Score=29.56 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=36.1
Q ss_pred hhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011909 226 DKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 273 (475)
Q Consensus 226 ERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLR 273 (475)
|=+.|.+.-+ .++.....+...+...+.++.+|......|.-+++.++
T Consensus 28 EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 28 EAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345777777 78888888888888888888887777777777776664
No 50
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=81.93 E-value=10 Score=39.53 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=55.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 253 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqe 253 (475)
++..|..++.-+..-+++|..+..+++.+..+...|.+.+... |-..+-.....+.......+.+.+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~-------------~~~~Q~~~~d~~e~~tq~skkml~ 91 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI-------------YPSEKQTLPQSIEQLTQKSKKIIE 91 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------SCSSTTCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cccccCCCCCchhhHHHHHHHHHH
Confidence 4455666666666666666666666666666555554333322 444443222222222445556777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 254 QVVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 254 EVkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
++..++.........|..|+..+...+..++.
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~ 123 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQ 123 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHH
Confidence 77777777777777777776666655443333
No 51
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.88 E-value=11 Score=34.35 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909 196 EQKISQLRDESAALNMKRASLEERLKLLEADKDS 229 (475)
Q Consensus 196 ~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~ 229 (475)
..-++.++++..+|.-++..++.+++.|+.|.+.
T Consensus 95 ~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 95 NKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555543
No 52
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=81.86 E-value=16 Score=30.43 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
.|..|.+|+..++......+.++-+|.+|+.++..
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.56 E-value=48 Score=33.82 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=28.7
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHh
Q 011909 209 LNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVEL 258 (475)
Q Consensus 209 LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeL 258 (475)
.++-+.....+++.|+.+++. +++++ .+...|....+.+..+..+...|
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENAR-LKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhh-hhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence 334444445555555554444 66677 77777777776666666555544
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=81.56 E-value=22 Score=29.54 Aligned_cols=87 Identities=16% Similarity=0.278 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh--hhhhh---chHHHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 011909 191 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW--TQMES---VSKETIAGLSVDITQLRMQVVELEESRNNL 265 (475)
Q Consensus 191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W--LkkEI---sLke~ISsl~~EiksLqeEVkeLEesr~eL 265 (475)
++..+..++..|......+..++..+...+..|....+.= -.+.+ .....+......+..+..++..|......+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l 90 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSEL 90 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555556666666666665552210000 00011 112345555556666666666666666666
Q ss_pred HHHHHHHHHHHH
Q 011909 266 LQENRQLKENVS 277 (475)
Q Consensus 266 ~kEIqqLReqLd 277 (475)
..++..|+..+.
T Consensus 91 ~~~~~~l~~~~~ 102 (112)
T 1l8d_A 91 ERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655554
No 55
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=81.17 E-value=27 Score=30.37 Aligned_cols=76 Identities=18% Similarity=0.101 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 129 VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 208 (475)
Q Consensus 129 l~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~ 208 (475)
.+.|+....+|+.+........+.+|+. ..++......++..|...+....+-|..|...+.+.++....
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~----------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDF----------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666655 223333344455566666666666666666666666655554
Q ss_pred HHHHHH
Q 011909 209 LNMKRA 214 (475)
Q Consensus 209 LkqkLa 214 (475)
...+|.
T Consensus 78 qL~~Lt 83 (112)
T 1x79_B 78 QMAVLM 83 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 56
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.27 E-value=13 Score=31.65 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHh--------HHHHHHHH
Q 011909 247 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGA--------LIDKLITE 318 (475)
Q Consensus 247 EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s--------~vekL~~e 318 (475)
++..++.++..|+.....+..++..|+..+..-+..+...+. ++..+..++|-|++ +|-.-..+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~--------~~~~ie~ElEeLTasLFeEAN~MVa~ar~e 77 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE--------EADKLNKEVEDLTASLFDEANNMVADARKE 77 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666777777776666655544444332 33344444444443 22222333
Q ss_pred HHHHHHHHHHHHHhh
Q 011909 319 NIELVEKVNDLSVKL 333 (475)
Q Consensus 319 nq~LeEe~neL~~~l 333 (475)
...++.++..|..+|
T Consensus 78 ~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 78 KYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455556665554
No 57
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.42 E-value=53 Score=33.30 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=49.3
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHH
Q 011909 173 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLR 252 (475)
Q Consensus 173 ~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLq 252 (475)
..++-++.++..+...+.+. ..+. +..+....|.++|+.++..+.++.+--..-=+.=+.|... +......-.
T Consensus 370 t~eeal~~~~~~i~~~l~~~---~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 442 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGL---RAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS---LDAEKAQGQ 442 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh---HHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH---HHHHHHHHH
Confidence 34444555555555543332 2222 3446666666677766666655522111100011122222 222222333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 253 MQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 253 eEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
+.|++||.+...+..+++.++.++++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777777777777766666553
No 58
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=79.10 E-value=36 Score=30.64 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=33.8
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 283 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqsei 283 (475)
+|+..|..+..++..-+-..++.=.+...|.-|+..++++|.-.+.++
T Consensus 116 ~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~QR 163 (167)
T 4gkw_A 116 SLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQR 163 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhc
Confidence 666777777666665555556666677788888888888887666543
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.61 E-value=34 Score=30.05 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 124 LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 203 (475)
Q Consensus 124 ~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~ 203 (475)
.++++|...++...+-+.+-..+-+.+-.|-..++..+... ..++..|+.||..+.++|-....++++|+
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~----------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG----------QKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544455555555555555555444444444433332 33567777777777777777777777777
Q ss_pred HHHHHHHHHHH
Q 011909 204 DESAALNMKRA 214 (475)
Q Consensus 204 ~Ee~~LkqkLa 214 (475)
.++..+...+.
T Consensus 99 ~~~~~~~~r~~ 109 (121)
T 3mq7_A 99 RENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred hhchhhhhHhh
Confidence 77766655443
No 60
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=77.98 E-value=17 Score=29.29 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHH
Q 011909 195 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQV 255 (475)
Q Consensus 195 L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEV 255 (475)
+..++..+..+|..|+.++..++..+..-+.+++. ++.|+ .+-+.+...-.++..|+..+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~-~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDA-FRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44566667777777777777777777766666665 45555 44445544444444444433
No 61
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=77.98 E-value=58 Score=34.43 Aligned_cols=19 Identities=11% Similarity=0.375 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 011909 109 ATLEGTVQQLQNECDLYKE 127 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~ 127 (475)
....+.|++|+..++.+..
T Consensus 96 ~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 96 KTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHhh
Confidence 3355556666666555543
No 62
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=76.39 E-value=31 Score=28.49 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=26.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
+..+-+..+...+..+...+..|+.....+..++..++..|...
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666666665544
No 63
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.68 E-value=6.5 Score=31.80 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=34.8
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 281 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqs 281 (475)
.|+..+.....++.....-|.+|+........+|+.|+..++++++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666667777777888888888888888888888888765
No 64
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=75.51 E-value=9.1 Score=31.60 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=41.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 283 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqsei 283 (475)
.+.+.++.....+.++..++.+.+.....|..++..|+.++..++...
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~ 75 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAEG 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 566778888888999999999999999999999999999999876543
No 65
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=74.03 E-value=76 Score=33.91 Aligned_cols=94 Identities=11% Similarity=0.183 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh-hHHHHHhhhhHHHHHhHHHHHHHHHHHHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN-DLHIQREGGLEMNIANLQSEKEFWLQKEAA 194 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~-~s~~Qkea~Lee~I~qLq~EI~~~~qEla~ 194 (475)
.++|++|..+..+++-.+..=..++.+++..+.........|+.=...+ ..+.+.++.-++.+.+++.+++...+.++.
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~Ae 84 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLAD 84 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777776666666666555554444333222222211111 123333344445555555555555554444
Q ss_pred HHHHHHHHHHHHHHH
Q 011909 195 LEQKISQLRDESAAL 209 (475)
Q Consensus 195 L~peiekL~~Ee~~L 209 (475)
...++..-.++...+
T Consensus 85 Y~~kl~aYe~~~~~~ 99 (497)
T 3iox_A 85 YPVKLKAYEDEQTSI 99 (497)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444443333333333
No 66
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=73.25 E-value=34 Score=27.39 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhHHHH
Q 011909 141 RQNDLRMQKEATLEET 156 (475)
Q Consensus 141 ~d~~~~LQkkA~lE~k 156 (475)
.+.+.+.-....++..
T Consensus 13 ~e~d~a~~~~~~~e~~ 28 (81)
T 1ic2_A 13 LDKENALDRAEQAEAD 28 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 67
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=72.53 E-value=21 Score=29.11 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=34.4
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 149 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 213 (475)
Q Consensus 149 kkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL 213 (475)
..+.+|..|.+++....... ..+...|..++.++.....+++....+|..|.+..-.|...+
T Consensus 11 q~~~Le~~l~e~E~~~~~~l---~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 11 QLAAKEAKLRDLEDSLARER---DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp -CTTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34466777777776543322 224455555555555555555555666666666665554443
No 68
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=72.16 E-value=9.6 Score=32.55 Aligned_cols=82 Identities=22% Similarity=0.189 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 011909 246 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS-DESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVE 324 (475)
Q Consensus 246 ~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs-LE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeE 324 (475)
.++..|+.+|..|+.++..|.+++..|.-+|.....+..- ....-+++ +..|=-... ...+...+++|+++..+|.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH-~~~NPa~~a-~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLH-MSLNPTSVA-RQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEE-ESSCHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeee-ecCChHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888888888888777654322111 00111111 111111111 11223566777777777776
Q ss_pred HHHHH
Q 011909 325 KVNDL 329 (475)
Q Consensus 325 e~neL 329 (475)
.+..|
T Consensus 90 ~v~~l 94 (100)
T 1go4_E 90 LLRAM 94 (100)
T ss_dssp HHTTC
T ss_pred HHHHH
Confidence 66655
No 69
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.12 E-value=13 Score=27.54 Aligned_cols=41 Identities=29% Similarity=0.322 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011909 128 KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 168 (475)
Q Consensus 128 kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~ 168 (475)
+++-|..+--||+.|...+-+-+|.+-..|..|++++.+|.
T Consensus 11 kiarlkkdnlqlerdeqnlekiianlrdeiarlenevashe 51 (52)
T 3he5_B 11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333334444444444444444445555555555554443
No 70
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=71.80 E-value=37 Score=30.47 Aligned_cols=47 Identities=9% Similarity=0.215 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011909 121 ECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 167 (475)
Q Consensus 121 El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~ 167 (475)
.+..++..++.....-...+..+....++.+.+|..+..-.......
T Consensus 53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~a 99 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS 99 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444334444455555566666666666555544444433
No 71
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.50 E-value=51 Score=30.06 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=24.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 214 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLa 214 (475)
+..|+.|+....-++..++.++.+|+.++..|-+++.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666667777777777777766654443
No 72
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=70.78 E-value=15 Score=30.26 Aligned_cols=55 Identities=11% Similarity=0.221 Sum_probs=40.5
Q ss_pred HHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 155 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 209 (475)
Q Consensus 155 ~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~L 209 (475)
+.+.+|++..++..+.++-+.++|.+++..+-....++-..+.+...|..+-..+
T Consensus 10 ~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 10 VTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999999999888887776665555555554443333
No 73
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.57 E-value=22 Score=38.34 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=17.7
Q ss_pred hchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 300 DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVA 339 (475)
Q Consensus 300 ~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~~ 339 (475)
.|+..+..|-..|+...+..+-|..-|.++..+++.+.++
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333
No 74
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.52 E-value=20 Score=29.40 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011909 194 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVV 256 (475)
Q Consensus 194 ~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVk 256 (475)
.+..++..+..+|..|+.++..++..+..-+.+|+. ++.|+ .+-+.+...-.++..|+..+.
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~-~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERER-ARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345556666666777777777776666666665555 45555 444444444444444444433
No 75
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=69.84 E-value=9.4 Score=28.21 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 011909 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVAT 131 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~ 131 (475)
.+.-.|-+|+.+|=-.-+.|.-|++.|..|+++|.-++-+++.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 6777788888888777777888899999998888877766554
No 76
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=69.44 E-value=43 Score=26.97 Aligned_cols=53 Identities=11% Similarity=0.190 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 152 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 204 (475)
Q Consensus 152 ~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~ 204 (475)
.+|.+|..|+.....+..++..+..+++++-.-.+-++.++..+.-.+.+|..
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~ 70 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 46778888888888888888888888888888888888888888777776643
No 77
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.91 E-value=11 Score=27.50 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=33.6
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 239 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 239 e~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
.+++.+....+.|.....+|++..+.|..|++.||..+.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 467778888888999999999999999999999987663
No 78
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.65 E-value=1.3e+02 Score=32.39 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHHHHHHHH----HHhhhhhhhh
Q 011909 206 SAALNMKRASLEERLKLL----EADKDSWTQM 233 (475)
Q Consensus 206 e~~LkqkLasLEeKl~~L----kaERD~WLkk 233 (475)
+...+++..+.++.+++| ..||..|+.+
T Consensus 514 ~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e 545 (592)
T 1f5n_A 514 EQMMEQKERSYQEHLKQLTEKMENDRVQLLKE 545 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666665 5566665533
No 79
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=66.73 E-value=28 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011909 187 FWLQKEAALEQKISQLRDESAALNMKRASLE 217 (475)
Q Consensus 187 ~~~qEla~L~peiekL~~Ee~~LkqkLasLE 217 (475)
.+.|++..|.-++..+.++..++..+|-++.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4777777777788888888877777776663
No 80
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=66.51 E-value=51 Score=26.78 Aligned_cols=40 Identities=13% Similarity=0.322 Sum_probs=21.2
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqL 276 (475)
...-+..+......+...+..|+.....+..++..++..|
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555444
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=65.81 E-value=59 Score=28.54 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 011909 184 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD 228 (475)
Q Consensus 184 EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD 228 (475)
-.++...+.+....++..|..+...|+++|...++++.+|.++..
T Consensus 58 L~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 58 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 334444455555667888888888888888888888888765443
No 82
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.70 E-value=10 Score=34.04 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 011909 267 QENRQLKENV 276 (475)
Q Consensus 267 kEIqqLReqL 276 (475)
..+..|+.++
T Consensus 103 ~r~~~L~~ql 112 (135)
T 2e7s_A 103 ILNKRLTEQL 112 (135)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 83
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=65.65 E-value=25 Score=29.44 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=36.1
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 149 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 214 (475)
Q Consensus 149 kkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLa 214 (475)
..+.+|..|.+++........ .+...|..|+.++.....+++....+|..|.+..-.|...++
T Consensus 20 ~~~~LE~~l~e~E~~~~~e~~---~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 20 ESRACLERIQELEDLLAKEKD---NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777665443222 255555566666666666666666666666666665544433
No 84
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=64.52 E-value=53 Score=26.24 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 112 EGTVQQLQNECDLYKEKVATLEETIQQLQ 140 (475)
Q Consensus 112 ~e~IkqLq~El~~lk~kl~~L~etikQLe 140 (475)
.+.|..|+.+.+........+....+..+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e 33 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAE 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333333
No 85
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=63.19 E-value=82 Score=30.24 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=16.6
Q ss_pred ccCCCCccccccccccCCCCCC
Q 011909 45 SQASEPADIQNVQVDADRHQSN 66 (475)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~ 66 (475)
++.+-+..||-+-+|..=-+.|
T Consensus 13 ~~ln~PV~vQatrld~sILPrN 34 (242)
T 3c9i_A 13 PSLNNPVVIQATRLDASILPRN 34 (242)
T ss_dssp GGGGSCCCCSCCCCCSSSSCTT
T ss_pred cCCCCCeEEEEeeccccccccc
Confidence 4456688888888887777777
No 86
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=63.07 E-value=63 Score=26.61 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 243 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 284 (475)
Q Consensus 243 sl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiq 284 (475)
.....+..|...+..++.....+.+.+..+...+.+++..+.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555554443
No 87
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.19 E-value=1.3e+02 Score=31.12 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=9.1
Q ss_pred cccCCCCCCCcc
Q 011909 58 VDADRHQSNGAE 69 (475)
Q Consensus 58 ~~~~~~~~~~~~ 69 (475)
-|.+.-||+|-.
T Consensus 42 eDwG~kCPsGCr 53 (390)
T 1deq_A 42 EDWNTKCPSGCR 53 (390)
T ss_pred hhccCCCCccch
Confidence 367788999964
No 88
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=61.99 E-value=28 Score=29.76 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-h-hhh
Q 011909 196 EQKISQLRDESAALNMKRASLEERLKLLEAD-K-DSW 230 (475)
Q Consensus 196 ~peiekL~~Ee~~LkqkLasLEeKl~~LkaE-R-D~W 230 (475)
..-+..|.++...+.+.+..-++++..++++ . |.|
T Consensus 10 tg~vkRL~KE~~~Y~kE~~~q~~riek~k~~~~~dey 46 (106)
T 1qsd_A 10 VKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPY 46 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3446688889999999999999999999886 4 455
No 89
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=61.75 E-value=1.2e+02 Score=29.23 Aligned_cols=72 Identities=29% Similarity=0.273 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909 151 ATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 229 (475)
Q Consensus 151 A~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~ 229 (475)
+.-|.+|..++-....|+.+ |..-...|..+.-.+...+.++.-|......+..++...+..|..|+.+.=+
T Consensus 80 ~dHe~rI~a~~a~l~dHE~R-------It~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS 151 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESR-------ITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVS 151 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCB
T ss_pred ecchhhhhhhhcccccHHHH-------hhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhh
Confidence 33444444444444444333 4444444455555555555666666666666777777777777777666544
No 90
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=61.65 E-value=77 Score=33.04 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=43.8
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 253 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqe 253 (475)
+.+.|..++..++.-+++|..+..++..... +...-+..| ++.|...+-.....+....+--+.+.+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts----------~~~~~v~~i---k~~~~~~q~~~~~n~~~~~q~Skkml~ 91 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTS----------EVKQLIKAI---QLTYNPDESSKPNMIDAATLKSRKMLE 91 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH---HHHHCTTTCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhh----------HHHHHHHHH---HHhhccccCCCCcchhhHHHHHHHHHH
Confidence 3444555555555544444444443333333 333333333 345555554333333333333344555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 254 QVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 254 EVkeLEesr~eL~kEIqqLReqLdel 279 (475)
++..++.........|..|+..+...
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~ 117 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSN 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56666666666666666665544433
No 91
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=60.73 E-value=36 Score=36.14 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909 247 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 287 (475)
Q Consensus 247 EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE 287 (475)
+...|..++..+......+..+...+.+++..+-..+.++=
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~ 157 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQT 157 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34455566666666666666666666677776666666653
No 92
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=60.56 E-value=46 Score=27.10 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 199 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 199 iekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
++.|+..+++|...++.++.... .+... ++.-| .++..+.....++.....+-+.|=.-+..|..||..-|.=|+
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~---~~l~~-~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLA---RERDT-SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp -------CTTHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 44444444445444554444322 11111 22233 344444444445544444555555556666666666555444
No 93
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.06 E-value=21 Score=30.47 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 128 KVATLEETIQQLQRQNDLRMQKEATLEETIKQL 160 (475)
Q Consensus 128 kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL 160 (475)
.+..|...+..|+.+++.+.+.+..+|.+|-..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777778888888888999999888663
No 94
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=60.06 E-value=31 Score=29.17 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=11.8
Q ss_pred hhhhchHHHHHHHhHHHHHHHHHHHH
Q 011909 297 EQKDFSTQIEAAGALIDKLITENIEL 322 (475)
Q Consensus 297 En~~Ls~E~E~l~s~vekL~~enq~L 322 (475)
.-+++..+.+.|...+..|+.++..|
T Consensus 62 dREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 62 AREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544333
No 95
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=59.46 E-value=31 Score=27.05 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909 192 EAALEQKISQLRDESAALNMKRASLEERLKLLEAD 226 (475)
Q Consensus 192 la~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE 226 (475)
++.-+.++.+|-..+..+.+.+.-++.++..|++|
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 34444444445444544444444444444444443
No 96
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.02 E-value=27 Score=31.29 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHH
Q 011909 142 QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 191 (475)
Q Consensus 142 d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qE 191 (475)
+++.+....+.+...+..|.....-...++...+.....+..|++....-
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444556666666666666555555555555555555555554433
No 97
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=58.79 E-value=27 Score=30.21 Aligned_cols=42 Identities=10% Similarity=0.153 Sum_probs=26.2
Q ss_pred HHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 011909 224 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNL 265 (475)
Q Consensus 224 kaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL 265 (475)
+.||++||..-+..+..+..+...+..|+..+.........+
T Consensus 3 ~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888777666666666666666666655444443333
No 98
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.98 E-value=1.5e+02 Score=30.64 Aligned_cols=6 Identities=0% Similarity=-0.236 Sum_probs=2.8
Q ss_pred CCCCCc
Q 011909 63 HQSNGA 68 (475)
Q Consensus 63 ~~~~~~ 68 (475)
-||+|=
T Consensus 18 ~CPT~C 23 (409)
T 1m1j_C 18 YCPTTC 23 (409)
T ss_dssp EEECTT
T ss_pred cCCCcc
Confidence 445554
No 99
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=56.33 E-value=30 Score=36.70 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 214 ASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 286 (475)
Q Consensus 214 asLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsL 286 (475)
..+..++..|+++|+. +.++| .++.. ..+...|..++..|......+..++..+.+++..+-..++++
T Consensus 43 r~~~~~~~~l~~~rn~-~sk~i~~~k~~----~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNS-VQKEIGKRFKA----KEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444455555555 44555 33221 112334555555555566666666666666666666665554
No 100
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=56.27 E-value=54 Score=33.80 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=45.2
Q ss_pred HHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011909 210 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 289 (475)
Q Consensus 210 kqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~E 289 (475)
-.+...+..++..|+++|+. +.++|.. ....+...|..++..+......+..+...+.+++..+-..++++=..
T Consensus 34 ~~~~r~~~~~~~~l~~~~n~-~sk~i~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 107 (421)
T 1ses_A 34 DREVQELKKRLQEVQTERNQ-VAKRVPK-----APPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWP 107 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHSSS-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHh-----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 33444555666667777777 6666622 11234455666666666666667777777777777776676665433
No 101
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=56.24 E-value=69 Score=25.87 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=27.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011909 177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE 218 (475)
Q Consensus 177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEe 218 (475)
+|..|+..+..+.+-...|-.++-.+.=++.-|.+++..+++
T Consensus 33 eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 33 EIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 466677777777777777777777777777777777766543
No 102
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=56.09 E-value=79 Score=30.81 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
..|..+.+...+++..|...+.=...+....=.+++.|...-+-+-+.....++.+..|+..|..++..|+.
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief 223 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDF 223 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555554444444444444444444444444445555555555555555444
No 103
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=55.95 E-value=92 Score=26.26 Aligned_cols=28 Identities=7% Similarity=0.150 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011909 141 RQNDLRMQKEATLEETIKQLRNQNDLHI 168 (475)
Q Consensus 141 ~d~~~~LQkkA~lE~kIKdLe~~~~s~~ 168 (475)
.-++.+++.+-.++..++.|+..+....
T Consensus 18 ~S~eeL~kQk~eL~~~l~~l~~e~~~R~ 45 (101)
T 1d7m_A 18 VSREQLIKQKDQLNSLLASLESEGAERE 45 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444333
No 104
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=55.82 E-value=33 Score=35.84 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909 249 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 287 (475)
Q Consensus 249 ksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE 287 (475)
..|..++..+......+..+...+.+++..+-..++++=
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345555555555555666666666666666666666643
No 105
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=55.19 E-value=83 Score=25.49 Aligned_cols=40 Identities=5% Similarity=0.170 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 244 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 283 (475)
Q Consensus 244 l~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqsei 283 (475)
.......|...+..++.....+.+.+..++..+.+++..+
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555554443
No 106
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=55.16 E-value=41 Score=29.91 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 120 NECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKI 199 (475)
Q Consensus 120 ~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~pei 199 (475)
.|+.....++......++.|++.+..+-++...++..+.+++.......-+ |.-+..++++.+.
T Consensus 9 ~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~---L~lQ~esmeaalk------------- 72 (130)
T 3cl3_D 9 GELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQ---LRMQGQSVEAALR------------- 72 (130)
T ss_dssp ------------------------------------------CTTTHHHHH---HHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------------
Confidence 445555566666666777777777777776666666666655544433222 2222222222222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh
Q 011909 200 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 235 (475)
Q Consensus 200 ekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI 235 (475)
-=+..-..-+.+|+.|...-..|=.|+|..|+..+
T Consensus 73 -mEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~ 107 (130)
T 3cl3_D 73 -MERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSV 107 (130)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333566777777777777777888777776
No 107
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=55.15 E-value=8.1 Score=41.57 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=6.7
Q ss_pred hhhhhchHHHHHHHh
Q 011909 296 SEQKDFSTQIEAAGA 310 (475)
Q Consensus 296 eEn~~Ls~E~E~l~s 310 (475)
+-|++|..++-.|.+
T Consensus 511 ekn~~lq~qL~~L~~ 525 (575)
T 2i1j_A 511 ERNERLHNQLKALKQ 525 (575)
T ss_dssp HHCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444433
No 108
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=54.96 E-value=82 Score=25.95 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 224 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lk 224 (475)
..+-...+-++...+.+-+.|.+.+..-++.+..|+
T Consensus 39 EnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 39 ENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 333333333444444555555555555555555543
No 109
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=54.81 E-value=27 Score=27.79 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 242 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 284 (475)
Q Consensus 242 Ssl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiq 284 (475)
.+...-+..|..+|..|+.....+..++..|+..+..+..++.
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667777777777777777777777776665544
No 110
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.04 E-value=1.1e+02 Score=26.64 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 011909 195 LEQKISQLRDESA 207 (475)
Q Consensus 195 L~peiekL~~Ee~ 207 (475)
.+.+|.+|+....
T Consensus 104 ~Eerf~KLKe~yt 116 (120)
T 3i00_A 104 NEQRYSKLKEKYS 116 (120)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 111
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=52.81 E-value=18 Score=30.45 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909 138 QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187 (475)
Q Consensus 138 QLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~ 187 (475)
..+......++....+--++-+|+.....-.+ .-+++|.+|+.+++.
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq---~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKD---AYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 44444555555555555566666555333322 245555555555443
No 112
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=52.78 E-value=1.1e+02 Score=26.36 Aligned_cols=69 Identities=9% Similarity=0.077 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-hhhh-hhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHH
Q 011909 195 LEQKISQLRDESAALNMKRASLEERLKLLEAD-KDSW-TQMES-VSKETIAGLSVDITQLRMQVVELEESRN 263 (475)
Q Consensus 195 L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE-RD~W-LkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~ 263 (475)
-..-+..|.++...+.+.+..-++++..++++ .|.| |+++. .|++...-+-.-...|..-+..|+....
T Consensus 13 ktg~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~ 84 (116)
T 3mxz_A 13 KTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLA 84 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34456788888999998888899999988764 5666 44444 4444444444444444444444444333
No 113
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.43 E-value=2e+02 Score=29.04 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 142 QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 142 d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
.....+......+.-++++.........+ ..-+.+...+...+ .+++.+...-+.++..+-+.-..-...|.+-+.
T Consensus 360 ~~~~vl~G~~t~eeal~~~~~~i~~~l~~-~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 360 AVINAASGRQTVDEALKDAQTRITAARDG-LRAVMEARNVTHLL---QQELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHh-hHHHHHhhhHHHHH---HHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 33344444444555555555554443322 12222233333322 334455555555555555555544444433222
Q ss_pred HHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhH
Q 011909 222 LLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELE 259 (475)
Q Consensus 222 ~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLE 259 (475)
.- ... -.+-| .++..|..++.++..++.+|+++.
T Consensus 436 ~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 436 AE---KAQ-GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 111 01234 667777777777777777777653
No 114
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=50.15 E-value=18 Score=29.67 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=32.5
Q ss_pred hhhhhh-hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 289 KKLQHA-TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 329 (475)
Q Consensus 289 Eeal~e-~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL 329 (475)
..|+.+ ++||++|-.+++.+...+..|..+|+.|.+-....
T Consensus 26 R~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 26 RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 67999999999999999999999998888744443
No 115
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=49.51 E-value=2.4e+02 Score=29.87 Aligned_cols=9 Identities=11% Similarity=0.025 Sum_probs=4.8
Q ss_pred cCCCCCCCc
Q 011909 60 ADRHQSNGA 68 (475)
Q Consensus 60 ~~~~~~~~~ 68 (475)
+---||+|=
T Consensus 72 fG~yCPTtC 80 (461)
T 3ghg_B 72 LGVLCPTGC 80 (461)
T ss_dssp TCBCEECHH
T ss_pred cCCcCCCcc
Confidence 444566665
No 116
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=49.46 E-value=58 Score=24.39 Aligned_cols=41 Identities=24% Similarity=0.156 Sum_probs=35.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 238 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 278 (475)
Q Consensus 238 ke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLde 278 (475)
+.+|..++.-+..|-..|++|+.+....+.||..|+.-|..
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45788888899999999999999999999999988776553
No 117
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=49.09 E-value=32 Score=35.51 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHhhhhhhhhhh-chH---HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 214 ASLEERLKLLEADKDSWTQMES-VSK---ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 286 (475)
Q Consensus 214 asLEeKl~~LkaERD~WLkkEI-sLk---e~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsL 286 (475)
..+..++..|+++|+. +.++| .++ +....+..+...|..+++.|+..... +.+++..+-..++++
T Consensus 40 r~~~~~~~~l~~~~n~-~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ipN~ 108 (425)
T 2dq3_A 40 REIIKRLEALRSERNK-LSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRK-------VEEELKNTLLWIPNL 108 (425)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhCCCC
Confidence 3444444555555555 55555 322 12334444555555555555444444 444444444555554
No 118
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=49.01 E-value=1e+02 Score=24.68 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
|.....+++..|..++.++..+..+..+.-.++..++--+..++..|.-.+.-.+
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667777777777777777777766677888888888888888887765443
No 119
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=48.96 E-value=1.2e+02 Score=25.68 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-hhhh-hhhhh-chHHHHhhhHHHHHHHHHHHHHh
Q 011909 192 EAALEQKISQLRDESAALNMKRASLEERLKLLEAD-KDSW-TQMES-VSKETIAGLSVDITQLRMQVVEL 258 (475)
Q Consensus 192 la~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE-RD~W-LkkEI-sLke~ISsl~~EiksLqeEVkeL 258 (475)
|..-..-+..|.++...+.+.+..-++++..++++ .|.| |+++. .|++...-+-.-...|..-+..|
T Consensus 9 LkIkt~~vkRL~KE~~~Y~kE~~~q~~riek~k~e~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L 78 (108)
T 1h7c_A 9 IKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDL 78 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33334556788889999999999999999999874 6665 44443 44444443333333333333333
No 120
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=48.80 E-value=54 Score=29.74 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=12.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 179 ANLQSEKEFWLQKEAALEQKISQLRDESAALN 210 (475)
Q Consensus 179 ~qLq~EI~~~~qEla~L~peiekL~~Ee~~Lk 210 (475)
..+...+......+..++.++..+..+...+.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~Le 100 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLT 100 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 33333333333333333344444333333333
No 121
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=48.65 E-value=1.3e+02 Score=25.79 Aligned_cols=63 Identities=17% Similarity=0.090 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 133 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 209 (475)
Q Consensus 133 ~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~L 209 (475)
=.+..||+++...++=.+-.+.+++.+++. .+.+++.+...+..++..++-.+..|+...+.+
T Consensus 15 MVsnAQLDNEKsal~YqVdlLKD~LEe~eE--------------~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 15 MVSNAQLDNEKTNFMYQVDTLKDMLLELEE--------------QLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777776666666666555555443 355666666666555555544444444444433
No 122
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.12 E-value=70 Score=25.76 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011909 117 QLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 164 (475)
Q Consensus 117 qLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~ 164 (475)
.|.+.|..++.+++..+.++.+|.......-+.+..+...++-|....
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666655555555555555555554443
No 123
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=48.01 E-value=1.1e+02 Score=24.91 Aligned_cols=63 Identities=19% Similarity=0.065 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHH
Q 011909 121 ECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 183 (475)
Q Consensus 121 El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~ 183 (475)
++..+..+=..|-.++.-|.--+++++.++-.+=+.-.-|+.++.+..+....++.+++.++.
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555666666665555555555555555555555555555444443
No 124
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=47.53 E-value=63 Score=27.80 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
.+++.+.+.+.++..+..++..|..++..|+.+|+=+..|.-.+|.-+-+-.+
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888999999999999999999999999999999988887766543
No 125
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.27 E-value=1.3e+02 Score=25.48 Aligned_cols=40 Identities=13% Similarity=0.269 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011909 115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 154 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE 154 (475)
+++|...+..++..+..+...+.+|+....++-+.+..++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777666655555544444
No 126
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.16 E-value=1.2e+02 Score=24.93 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011909 115 VQQLQNECDLYKEKVATLEE 134 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~e 134 (475)
+..+..++..+..++..|..
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~ 24 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQ 24 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 127
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=46.87 E-value=1.2e+02 Score=24.80 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=25.3
Q ss_pred chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
+|+..-..++.=-..|..=+..|+.....+.+.|..|+.+..++.
T Consensus 29 sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 29 ALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555566666666666666666666666554
No 128
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=46.85 E-value=78 Score=33.52 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=20.2
Q ss_pred HHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909 252 RMQ-VVELEESRNNLLQENRQLKENVSSLRSQLSSD 286 (475)
Q Consensus 252 qeE-VkeLEesr~eL~kEIqqLReqLdelqseiqsL 286 (475)
..+ +..+......+..+...+.+++..+-..+.++
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 144 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNI 144 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444 55555555556666666666666665565554
No 129
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.73 E-value=31 Score=26.02 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=21.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 303 TQIEAAGALIDKLITENIELVEKVNDLSVKLD 334 (475)
Q Consensus 303 ~E~E~l~s~vekL~~enq~LeEe~neL~~~l~ 334 (475)
.++|+|...+..|++....|..++.+|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666667777777664
No 130
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.60 E-value=58 Score=25.01 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
..+...|..+...|..++..|..++..|+..+..|
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666655555555555444
No 131
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=46.44 E-value=21 Score=23.91 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=22.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 306 EAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 306 E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
+.+.+++..|-++|.+|.-+|.+|-.++
T Consensus 2 dqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788889999999999999997754
No 132
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.13 E-value=1.2e+02 Score=24.54 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=25.8
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 149 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 203 (475)
Q Consensus 149 kkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~ 203 (475)
.++.+|.+|..|+..+....-.. .--+++..|..++.....++..+..+|..|.
T Consensus 30 ~Ie~LE~~i~~le~~ladp~~y~-~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQVADASFFS-QPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444544443322110 1123455556666666666666666665553
No 133
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=45.70 E-value=1.4e+02 Score=25.25 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHhH
Q 011909 201 QLRDESAALNMKRASL 216 (475)
Q Consensus 201 kL~~Ee~~LkqkLasL 216 (475)
++..+...|...+..+
T Consensus 65 kl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 65 KLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHTTSHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3333333333333333
No 134
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=45.65 E-value=79 Score=28.63 Aligned_cols=15 Identities=13% Similarity=-0.104 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLY 125 (475)
Q Consensus 111 l~e~IkqLq~El~~l 125 (475)
....++.|..+...+
T Consensus 31 ~~a~~~~le~e~~kl 45 (146)
T 2xnx_M 31 HRATALEKELEEKKK 45 (146)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 135
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.60 E-value=71 Score=25.76 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011909 124 LYKEKVATLEETIQQLQ 140 (475)
Q Consensus 124 ~lk~kl~~L~etikQLe 140 (475)
.++..+..+...++.|+
T Consensus 44 eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 44 ELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 136
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.23 E-value=81 Score=25.76 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909 245 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 288 (475)
Q Consensus 245 ~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~ 288 (475)
+..-.+|-..|.+|-.++..+..|+..++.....+..++..++.
T Consensus 29 nvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 29 NIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666666666666666666666666666555444
No 137
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=45.18 E-value=1.2e+02 Score=25.90 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 011909 258 LEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 258 LEesr~eL~kEIqqLReqLdel 279 (475)
|...++++.=+|.-|++.+.+.
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~ 42 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLEL 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544
No 138
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=43.91 E-value=63 Score=24.42 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 247 DITQLRMQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 247 EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
-+..|..++..|+.....|..+|..|+..+..+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555443
No 139
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=43.76 E-value=94 Score=25.17 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=36.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 173 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 173 ~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
.+++++.+|++-++...-++++|-.+|..-+ ..|+|++..+|.++..+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ---~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQ---QKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccc
Confidence 4677788888888888888888888887654 45788888888777754
No 140
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=43.63 E-value=1.3e+02 Score=24.24 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 199 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 199 iekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqL 276 (475)
++.++..+++|...++.++.....- .. -++..| .++..+.....++.....+-++|=.-+..|..||..-|.=|
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~---~~-~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVE---AA-NYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555555554444311 00 022333 44445555555555555555555566666666666655444
No 141
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=43.25 E-value=46 Score=22.57 Aligned_cols=27 Identities=41% Similarity=0.357 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 184 EKEFWLQKEAALEQKISQLRDESAALN 210 (475)
Q Consensus 184 EI~~~~qEla~L~peiekL~~Ee~~Lk 210 (475)
+|....|+++.++.++..|+=+-+.|+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 142
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=43.01 E-value=92 Score=24.37 Aligned_cols=44 Identities=23% Similarity=0.144 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHH
Q 011909 207 AALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQL 251 (475)
Q Consensus 207 ~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksL 251 (475)
-.++..|+..|+|+++|-.-... +..|+ -++..|..+..++..|
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~-ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSS-LSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHh-hhHHHHHHHHHHHHHHhhhhhh
Confidence 34555566666666666333333 44444 4444444444444444
No 143
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.74 E-value=32 Score=23.92 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=22.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 307 AAGALIDKLITENIELVEKVNDLSVKLD 334 (475)
Q Consensus 307 ~l~s~vekL~~enq~LeEe~neL~~~l~ 334 (475)
+|-..|+.|..+|..|+.+|.-|..-|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4667889999999999999988877543
No 144
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=42.51 E-value=1.5e+02 Score=24.69 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
+...+.+++..|..++..+..+..+..+.-.++..++--+..++..|.-.+.
T Consensus 35 ~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 35 LAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544445566666666666666665543
No 145
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=42.33 E-value=1.9e+02 Score=25.99 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHH
Q 011909 109 ATLEGTVQQLQNECDLYKEKVATLEETIQQL---QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 185 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQL---e~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI 185 (475)
++-++.|..|++++..+.+.+.......+.- +.+...-+++.-.+|..+|+--+-++ .|-++|.-|+.+.
T Consensus 56 ~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe-------~LT~TiG~LrKEL 128 (167)
T 4gkw_A 56 VAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVE-------SLTETIGILRKEL 128 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHH-------HHHHHHHHHHHHH
Confidence 4447788888888888888887766555332 23333345666666666655444333 3566788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 186 EFWLQKEAALEQKISQLRDESAALNMKRA 214 (475)
Q Consensus 186 ~~~~qEla~L~peiekL~~Ee~~LkqkLa 214 (475)
..-.-+....-.-+++|+-++..++++++
T Consensus 129 EdEklK~~E~MdSFE~LkvENE~vkerl~ 157 (167)
T 4gkw_A 129 ENEKLKAAENMDSFEKLSMENENLKEKIA 157 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 88888888888889999999999988776
No 146
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.48 E-value=75 Score=23.18 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011909 193 AALEQKISQLRDESAALNMK 212 (475)
Q Consensus 193 a~L~peiekL~~Ee~~Lkqk 212 (475)
+.|+.++.-|.+++..|+|-
T Consensus 20 aeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 20 SELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34444444555555555443
No 147
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.47 E-value=73 Score=24.34 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 247 DITQLRMQVVELEESRNNLLQENRQLKENVSSLR 280 (475)
Q Consensus 247 EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq 280 (475)
-+..|..++..|+.....|..+|..|+..+..+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554443
No 148
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=40.13 E-value=78 Score=24.02 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 163 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~ 163 (475)
++++..|..++..+..+..+....-.++..++--+..++..|.-.+.-
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkL 50 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKL 50 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456666777777777777777666778888888888998888777643
No 149
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=39.98 E-value=3.6e+02 Score=28.51 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=24.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 215 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLas 215 (475)
+.+.|..++..++.-+++|..+..+++....+--.+-..+..
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~ 123 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKD 123 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 555666666666666666666666665555555555444433
No 150
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.18 E-value=1.1e+02 Score=22.50 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=30.0
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011909 173 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEER 219 (475)
Q Consensus 173 ~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeK 219 (475)
++++++.+|++-++...-++++|-.+|..-+ ..++|++..+|.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq---~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQ---MKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 4567777777777777777787777776554 3466666666543
No 151
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=38.61 E-value=1.2e+02 Score=25.86 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=26.7
Q ss_pred hhhhhhhchHHHHhhhHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 229 SWTQMESVSKETIAGLSVDITQLRM-------QVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 229 ~WLkkEIsLke~ISsl~~EiksLqe-------EVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.+++.-+.|...++.+..+...|+. .|.+|+.....|..|++.|+..-.-|
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555555555555555554 45555555555555555555444444
No 152
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.39 E-value=75 Score=32.56 Aligned_cols=49 Identities=22% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909 115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 163 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~ 163 (475)
|..|+.++..++++...|+..+++++.++..+-++....+...+.|.+.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~ 53 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNE 53 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555544444444444444443
No 153
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=38.20 E-value=59 Score=28.52 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 011909 112 EGTVQQLQNECDLYKEKVATLEETIQQL---QRQNDLRMQK 149 (475)
Q Consensus 112 ~e~IkqLq~El~~lk~kl~~L~etikQL---e~d~~~~LQk 149 (475)
+..+.+|.+.+..+...+..|...+.+| .....++.+.
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~ 48 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRET 48 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666667777777766666666 5544444333
No 154
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=37.08 E-value=33 Score=28.37 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=28.1
Q ss_pred hhhhhh-hhhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 011909 289 KKLQHA-TSEQKDFSTQIEAAGALIDKLITENIELVE 324 (475)
Q Consensus 289 Eeal~e-~eEn~~Ls~E~E~l~s~vekL~~enq~LeE 324 (475)
..|+.. ++||++|-.+++.+...+..|..+|.+|.+
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 679999999999999999999998876654
No 155
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=36.36 E-value=2.8e+02 Score=26.12 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET 156 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~k 156 (475)
..++.++..+..+...|..++++|..+++.+++.+..+|..
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555443
No 156
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.29 E-value=84 Score=31.64 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 114 TVQQLQNECDLYKEKVATLEETIQQLQR 141 (475)
Q Consensus 114 ~IkqLq~El~~lk~kl~~L~etikQLe~ 141 (475)
+++.|.+++..++..+......+..|+.
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~ 33 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSE 33 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 3344444444444433333334444443
No 157
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=36.27 E-value=60 Score=22.68 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=23.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 306 EAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 306 E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
.+|-..|+.|..+|..|+.+|.-|+.-|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3567789999999999999999997744
No 158
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=35.85 E-value=81 Score=24.33 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 238 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 278 (475)
Q Consensus 238 ke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLde 278 (475)
+.++..++..+.+|-.+|..|+.+....+.||.-|+.-|..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999999999999999999999888766543
No 159
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.76 E-value=3.9e+02 Score=27.67 Aligned_cols=8 Identities=13% Similarity=0.248 Sum_probs=3.6
Q ss_pred HHHHHHhh
Q 011909 326 VNDLSVKL 333 (475)
Q Consensus 326 ~neL~~~l 333 (475)
+.+....|
T Consensus 238 ~~Qm~~~L 245 (390)
T 1deq_A 238 MQQTKMVL 245 (390)
T ss_pred hhhheeee
Confidence 44444444
No 160
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=35.38 E-value=40 Score=36.24 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHH
Q 011909 115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA 194 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~ 194 (475)
.+..+.++...+.....|.+..+.++.+...+.++...+|..+..|+.........+..|+.++..++.++.....+...
T Consensus 351 ~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 430 (575)
T 2i1j_A 351 MERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVEL 430 (575)
T ss_dssp HHHHHHHHHHHHHC------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555566777777788888888888888888888888888887777777777777777766665555554
Q ss_pred HHHHHHHHHHHHHHH
Q 011909 195 LEQKISQLRDESAAL 209 (475)
Q Consensus 195 L~peiekL~~Ee~~L 209 (475)
=..+-.+|+.+...-
T Consensus 431 ~~~e~~~~~~~~~~a 445 (575)
T 2i1j_A 431 KDSETRRLQEEVEDA 445 (575)
T ss_dssp -----------CHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 161
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=35.05 E-value=3.2e+02 Score=26.46 Aligned_cols=190 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhhhhHHHHHh-hhhHHHHHhHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVA-TLEETIQQLQRQNDLRMQKE-ATLEETIKQLRNQNDLHIQRE-GGLEMNIANLQSEKEF 187 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~-~L~etikQLe~d~~~~LQkk-A~lE~kIKdLe~~~~s~~Qke-a~Lee~I~qLq~EI~~ 187 (475)
+...+..|+..+.-+..++. .+......++....-+.... +.+...+.+|+.......+.- ..+...+..|+....-
T Consensus 20 l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p 99 (273)
T 3s84_A 20 IGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRP 99 (273)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHH-HHHHHHHHh------
Q 011909 188 WLQKE-AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDIT-QLRMQVVEL------ 258 (475)
Q Consensus 188 ~~qEl-a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~Eik-sLqeEVkeL------ 258 (475)
...++ ..+...++.++..-.-+...+..- +..-+ .|++.+.-+..++. .|...+..|
T Consensus 100 ~~eelr~kl~~~veelk~~L~Py~eelr~k--------------~~~~leeLr~~l~P~ae~~~~kl~~~~e~L~~ql~~ 165 (273)
T 3s84_A 100 HADELKAKIDQNVEELKGRLTPYADEFKVK--------------IDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKK 165 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhHhHHHHHHHH--------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 259 --EESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVND 328 (475)
Q Consensus 259 --Eesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~ne 328 (475)
+.-+..+...+..||.+|.-.-..+.. .|...+|.+...+..+.++-++-.+.|+.
T Consensus 166 ~a~~L~~~l~~~~eeLr~~L~p~ae~lr~--------------~l~~~~e~l~~~l~~~~~~~~qq~e~f~~ 223 (273)
T 3s84_A 166 NAEELKARISASAEELRQRLAPLAEDVRG--------------NLRGNTEGLQKSLAELGGHLDQQVEEFRR 223 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------TSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 162
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=34.78 E-value=1e+02 Score=22.49 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 011909 265 LLQENRQLKE 274 (475)
Q Consensus 265 L~kEIqqLRe 274 (475)
|.+||..||.
T Consensus 36 lekeianlrk 45 (49)
T 3he5_A 36 LEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 163
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=34.34 E-value=91 Score=26.82 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhh
Q 011909 205 ESAALNMKRASLEERLKLLEADKDSW 230 (475)
Q Consensus 205 Ee~~LkqkLasLEeKl~~LkaERD~W 230 (475)
+...|.+++..+...+..|..|||.+
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkERDFY 44 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIEREFY 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444445555544
No 164
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=34.01 E-value=2.2e+02 Score=24.15 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALNMKRASLEERLKL 222 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~ 222 (475)
+.+.+.+..++...+.....+......|+.++..
T Consensus 7 LRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 7 LRKNAEVTKQVSMARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 165
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=33.75 E-value=53 Score=22.94 Aligned_cols=28 Identities=4% Similarity=0.093 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909 307 AAGALIDKLITENIELVEKVNDLSVKLD 334 (475)
Q Consensus 307 ~l~s~vekL~~enq~LeEe~neL~~~l~ 334 (475)
+|-..|+.|..+|..|+.+|.-|..-|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 5667899999999999999998877553
No 166
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=33.52 E-value=1.7e+02 Score=30.92 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=27.9
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 240 ~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
....+..+...|..+++.|+.....+..++..+--.|=
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iP 154 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLP 154 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566777778888888888888888888877655554
No 167
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=33.30 E-value=1.9e+02 Score=23.22 Aligned_cols=24 Identities=13% Similarity=0.208 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 011909 136 IQQLQRQNDLRMQKEATLEETIKQ 159 (475)
Q Consensus 136 ikQLe~d~~~~LQkkA~lE~kIKd 159 (475)
+.+|..+++++.++.-..+..+..
T Consensus 6 v~~l~~E~eel~~klk~~~ee~~~ 29 (71)
T 1uix_A 6 VANLANEKEELNNKLKEAQEQLSR 29 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333
No 168
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.80 E-value=1.9e+02 Score=29.63 Aligned_cols=75 Identities=15% Similarity=0.287 Sum_probs=45.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 252 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 331 (475)
Q Consensus 252 qeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~ 331 (475)
-.++..|...+..+..++..|+...+.+..++..+... -++-..|..+...+...+..+..+-..+++++.++..
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKRE-----GKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSS-----CSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666665555543211 0233455566666667777777777777777777655
No 169
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.74 E-value=74 Score=26.33 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=26.4
Q ss_pred hhhhhh-hhhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 011909 289 KKLQHA-TSEQKDFSTQIEAAGALIDKLITENIELVE 324 (475)
Q Consensus 289 Eeal~e-~eEn~~Ls~E~E~l~s~vekL~~enq~LeE 324 (475)
..|+.. ++||++|-.+++.+...+..|..+|.+|.+
T Consensus 38 R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 38 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 679999998988888888888887755554
No 170
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.57 E-value=69 Score=24.31 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 246 VDITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 246 ~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.-+..|..++..|+.....|..++..|+..+..+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555554444
No 171
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=32.36 E-value=1.9e+02 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=12.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 011909 108 EATLEGTVQQLQNECDLYKEKVATL 132 (475)
Q Consensus 108 e~~l~e~IkqLq~El~~lk~kl~~L 132 (475)
+.++..+|+.|+.++....+++..|
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L 37 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRL 37 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666555554444443
No 172
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.33 E-value=72 Score=22.14 Aligned_cols=28 Identities=4% Similarity=0.105 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 306 EAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 306 E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
.+|-..|+.|..+|..|+.+|.-|..-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3566788999999999999999887644
No 173
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.05 E-value=82 Score=23.65 Aligned_cols=27 Identities=33% Similarity=0.289 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 197 QKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 197 peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
.+++.|+.++..|+.+...|.+++..|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 174
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.01 E-value=2.3e+02 Score=23.92 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=38.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011909 178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVV 256 (475)
Q Consensus 178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVk 256 (475)
+..++.++.....+++.+.+++..|......-...-...|..... +..|+ +|...+=.-...+ |.
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~--------ie~ElEeLTasLFeEAN~M------Va 72 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADK--------LNKEVEDLTASLFDEANNM------VA 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH------HH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH------HH
Confidence 344444455555555555555555554444443333333333332 22344 4443332211111 22
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 011909 257 ELEESRNNLLQENRQLKENVSS 278 (475)
Q Consensus 257 eLEesr~eL~kEIqqLReqLde 278 (475)
.....+..+...+.+|+.+|..
T Consensus 73 ~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 73 DARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 2233445556666666666654
No 175
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.99 E-value=78 Score=22.10 Aligned_cols=28 Identities=4% Similarity=0.099 Sum_probs=23.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 306 EAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 306 E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
.+|-..|+.|..+|..|+.+|.-|..-|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3567788999999999999999887644
No 176
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.43 E-value=1.6e+02 Score=21.63 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL 160 (475)
Q Consensus 116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL 160 (475)
..++..+...+.....+......+....+.+...+..+-..|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 177
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=30.25 E-value=1.8e+02 Score=22.06 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=28.4
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 011909 240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 281 (475)
Q Consensus 240 ~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqs 281 (475)
++..++.++..|+.++..-....+-|+.|--.+++-+..+++
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 556666677777777777777777777777777666665543
No 178
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=30.10 E-value=3.3e+02 Score=25.09 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=40.0
Q ss_pred HHhHHHHHHHH-----HHhhhhhhhhhhchHHHHhhh----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 213 RASLEERLKLL-----EADKDSWTQMESVSKETIAGL----SVDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 213 LasLEeKl~~L-----kaERD~WLkkEIsLke~ISsl----~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
+..|..-+..| ....+.|+...-.++..|.+. ......|+..+..|+.....+...+..++....
T Consensus 14 l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 14 LQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444 455666666666664444444 444556777777888888888888887777444
No 179
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.85 E-value=1.9e+02 Score=30.07 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=26.1
Q ss_pred HhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 241 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 241 ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
...+..+...|..+++.|+.....+..++..+--.|=
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666777777788888888888888777665554
No 180
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=29.84 E-value=2.3e+02 Score=23.10 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 011909 154 EETIKQLRN 162 (475)
Q Consensus 154 E~kIKdLe~ 162 (475)
+.++..|+.
T Consensus 5 e~rv~~LEr 13 (83)
T 2xdj_A 5 EDRVTQLER 13 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 181
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.50 E-value=2e+02 Score=27.08 Aligned_cols=27 Identities=41% Similarity=0.439 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 115 VQQLQNECDLYKEKVATLEETIQQLQR 141 (475)
Q Consensus 115 IkqLq~El~~lk~kl~~L~etikQLe~ 141 (475)
|..|+.|+..+.+++.....++++|+.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444
No 182
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.40 E-value=1.1e+02 Score=21.61 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRNQNDL 166 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s 166 (475)
+||++....++..+..+|..+..|+.-..+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 577777777777777777777777665543
No 183
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.31 E-value=1.1e+02 Score=31.31 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 011909 199 ISQLRDESAAL 209 (475)
Q Consensus 199 iekL~~Ee~~L 209 (475)
..+|.++...+
T Consensus 47 rr~l~n~~~el 57 (403)
T 4etp_A 47 RRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 33444443333
No 184
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=29.05 E-value=50 Score=23.37 Aligned_cols=29 Identities=34% Similarity=0.446 Sum_probs=24.2
Q ss_pred hhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 011909 296 SEQKDFSTQIEAAGALIDKLITENIELVE 324 (475)
Q Consensus 296 eEn~~Ls~E~E~l~s~vekL~~enq~LeE 324 (475)
-||++|--+++.....+-+|..+|-+|.|
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 48889999999999999999999966653
No 185
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.93 E-value=1.4e+02 Score=24.54 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
.++...+..++..|..+|..|+.++..|+.++..|
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666655555555554444
No 186
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.85 E-value=2.4e+02 Score=22.99 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 011909 115 VQQLQNECDLYK 126 (475)
Q Consensus 115 IkqLq~El~~lk 126 (475)
+-+.++|++.+.
T Consensus 20 ~~q~qaEl~sLr 31 (78)
T 3iv1_A 20 MDRAQAELNALK 31 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHH
Confidence 333344444333
No 187
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.83 E-value=52 Score=26.17 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 249 TQLRMQVVELEESRNNLLQENRQLKENVSS 278 (475)
Q Consensus 249 ksLqeEVkeLEesr~eL~kEIqqLReqLde 278 (475)
..|+.++..|+.....|..++..|+.+|..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566666555543
No 188
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.66 E-value=2.3e+02 Score=29.93 Aligned_cols=74 Identities=18% Similarity=0.097 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011909 193 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 272 (475)
Q Consensus 193 a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqL 272 (475)
-.+..++.+++.+...|+.+...+..++..++...+ ....+..+...|..++..|+.....+..++..+
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~-----------~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE-----------DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445544443221 123445556677777777777777777777766
Q ss_pred HHHHH
Q 011909 273 KENVS 277 (475)
Q Consensus 273 ReqLd 277 (475)
--.|=
T Consensus 105 l~~iP 109 (485)
T 3qne_A 105 INQVG 109 (485)
T ss_dssp HTTSC
T ss_pred HHhCC
Confidence 55543
No 189
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.20 E-value=2.9e+02 Score=23.88 Aligned_cols=14 Identities=21% Similarity=-0.071 Sum_probs=5.9
Q ss_pred HHHhHHHHHHHHHH
Q 011909 177 NIANLQSEKEFWLQ 190 (475)
Q Consensus 177 ~I~qLq~EI~~~~q 190 (475)
.|.+|+.+++.+..
T Consensus 16 ~Ie~Lkreie~lk~ 29 (120)
T 3i00_A 16 LIERLYREISGLKA 29 (120)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 190
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=27.99 E-value=5.3e+02 Score=26.78 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909 135 TIQQLQRQNDLRMQKEATLEETIKQLRNQ 163 (475)
Q Consensus 135 tikQLe~d~~~~LQkkA~lE~kIKdLe~~ 163 (475)
++.+|+...++..+.=+..+..|+.++..
T Consensus 39 ~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 39 DLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 45555555555555556666666666654
No 191
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.90 E-value=1.1e+02 Score=22.22 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=20.1
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 173 GLEMNIANLQSEKEFWLQKEAALEQKISQLRD 204 (475)
Q Consensus 173 ~Lee~I~qLq~EI~~~~qEla~L~peiekL~~ 204 (475)
+|-++|.++..||+.-.++++.+..++..|..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777766666666666555543
No 192
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.86 E-value=80 Score=24.35 Aligned_cols=32 Identities=31% Similarity=0.252 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909 245 SVDITQLRMQVVELEESRNNLLQENRQLKENV 276 (475)
Q Consensus 245 ~~EiksLqeEVkeLEesr~eL~kEIqqLReqL 276 (475)
..-+..|..++..|+.....|..++..|+..+
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666665544
No 193
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=27.79 E-value=86 Score=21.89 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=23.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909 306 EAAGALIDKLITENIELVEKVNDLSVKL 333 (475)
Q Consensus 306 E~l~s~vekL~~enq~LeEe~neL~~~l 333 (475)
.+|...|+.|...|..|+.+|.-|+.-|
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3567889999999999999999887633
No 194
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.47 E-value=1e+02 Score=29.45 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=30.3
Q ss_pred hhhhhh-hhhhhhchHHHHHHHhHHHHHHHHHHHHHH---HHHHHHH
Q 011909 289 KKLQHA-TSEQKDFSTQIEAAGALIDKLITENIELVE---KVNDLSV 331 (475)
Q Consensus 289 Eeal~e-~eEn~~Ls~E~E~l~s~vekL~~enq~LeE---e~neL~~ 331 (475)
..|+.+ ++||+.|-.+++.+...+..|..+|.+|.+ .++.|..
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~ 153 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAE 153 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 679999999999888888888888866654 4444443
No 195
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.46 E-value=1.1e+02 Score=24.34 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 011909 201 QLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 201 kL~~Ee~~LkqkLasLEeKl~ 221 (475)
.+..++..|...+..|..++.
T Consensus 47 ~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 47 STTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544443
No 196
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.10 E-value=1.6e+02 Score=24.42 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 011909 115 VQQLQNECDLYKEKVA 130 (475)
Q Consensus 115 IkqLq~El~~lk~kl~ 130 (475)
|+.|+.+|+.++..+.
T Consensus 60 i~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 60 IERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444443333333
No 197
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.23 E-value=64 Score=24.33 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 193 AALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 193 a~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
..+...|+.|..++..|+.++..+++++
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456678888888888888887776653
No 198
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.19 E-value=1.8e+02 Score=21.78 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909 154 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 188 (475)
Q Consensus 154 E~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~ 188 (475)
+.++.+|+..+.....+...|.+.+..-+.+|...
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555544444444555444444444443
No 199
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.15 E-value=2.9e+02 Score=23.22 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011909 130 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 168 (475)
Q Consensus 130 ~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~ 168 (475)
..|...+.+++.+...+.+.+..++..|.+++...+.-.
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666665555433
No 200
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.69 E-value=63 Score=31.67 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=6.4
Q ss_pred cccCCceeecc
Q 011909 407 AEYSGEIVQIP 417 (475)
Q Consensus 407 ~~~~~eiv~~~ 417 (475)
++..|+||.|-
T Consensus 155 ~E~~Gev~tv~ 165 (251)
T 3m9b_A 155 FEAVGEISTLR 165 (251)
T ss_dssp CCCCSEEEEEE
T ss_pred CCCcccEEEEE
Confidence 33567776664
No 201
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.13 E-value=59 Score=24.56 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=18.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 011909 305 IEAAGALIDKLITENIELVEKVNDLSVK 332 (475)
Q Consensus 305 ~E~l~s~vekL~~enq~LeEe~neL~~~ 332 (475)
++.+...++.+..+|..|.+++..|..+
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777778888888888887777543
No 202
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.12 E-value=43 Score=21.99 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 011909 205 ESAALNMKRASLEERLKL 222 (475)
Q Consensus 205 Ee~~LkqkLasLEeKl~~ 222 (475)
++++|.|+++.+..++..
T Consensus 8 endaleqkiaalkqkias 25 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 203
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.94 E-value=4.8e+02 Score=25.36 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=8.2
Q ss_pred HHHHH--HHHHHHHHHHH
Q 011909 80 HLLQR--EAMAILEETVK 95 (475)
Q Consensus 80 ~~~~~--~~~~~~eeti~ 95 (475)
+|||= -.+.|..+||.
T Consensus 75 SLFQGFeAsLPiIne~i~ 92 (242)
T 3uux_B 75 SLFQGFKSYLPIAELAIE 92 (242)
T ss_dssp CHHHHHHHHHHHHGGGGC
T ss_pred chhhccccccHHHHHHHH
Confidence 46664 22345566654
No 204
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=24.73 E-value=1.1e+02 Score=21.16 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
.||++..+.++++...+|..+..|+.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56777777777777777777766664
No 205
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=24.66 E-value=3.8e+02 Score=24.04 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 133 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS 200 (475)
Q Consensus 133 ~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peie 200 (475)
..-+..|..+.+.++.++-.++..|.+|+.-+-...-+ =...++..+..+|+....++..|..=|.
T Consensus 13 ~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~Rgvr--P~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 13 EKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQ--PAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999998776543322 2445566677777766666665554443
No 206
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.57 E-value=3.8e+02 Score=25.20 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=16.5
Q ss_pred HHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 011909 94 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV 129 (475)
Q Consensus 94 i~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl 129 (475)
|-+|..||.+.-|.=......|+.|+.++.+++...
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555544444444444444444444443333
No 207
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.94 E-value=3.9e+02 Score=23.88 Aligned_cols=45 Identities=24% Similarity=0.153 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 011909 85 EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV 129 (475)
Q Consensus 85 ~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl 129 (475)
+|...+.+-++.|..|.+...|=..+|+..+..+++.+...+..+
T Consensus 79 eA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~l 123 (152)
T 4fla_A 79 EACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKL 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888888888877777777777777766665544433
No 208
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.91 E-value=2.4e+02 Score=24.24 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred hhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 228 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEE------------SRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 228 D~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEe------------sr~eL~kEIqqLReqLdelqseiqs 285 (475)
|.++-..| .|++.|..+..++...+..++..+. .......++..++.+|.++++.+..
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 209
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.90 E-value=3.6e+02 Score=23.40 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHhhhhHHHHHh-hhhHH------------HH------------
Q 011909 127 EKVATLEETIQQLQRQNDLRMQKEATL---EETIKQLRNQNDLHIQRE-GGLEM------------NI------------ 178 (475)
Q Consensus 127 ~kl~~L~etikQLe~d~~~~LQkkA~l---E~kIKdLe~~~~s~~Qke-a~Lee------------~I------------ 178 (475)
.++..|...+.+++.+...+.+.+..+ +.++.++....+.-..-. ...+- +|
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~ 88 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGS 88 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCC
Confidence 445556666666666666666667766 666666666655432211 11000 00
Q ss_pred -----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 179 -----ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 224 (475)
Q Consensus 179 -----~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lk 224 (475)
..+..-++....++..+...+..+......++.++..++..++.++
T Consensus 89 g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 89 GYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0133444444445555555555566666666666666666665553
No 210
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.86 E-value=1.4e+02 Score=22.24 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=25.9
Q ss_pred hhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 011909 232 QMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ 267 (475)
Q Consensus 232 kkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~k 267 (475)
.+|. .|+.-++++..++..|.+++..|+....+|..
T Consensus 16 lkenaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 16 LKENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3455 77777788888888888887777777666654
No 211
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.56 E-value=3.5e+02 Score=23.12 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=6.9
Q ss_pred HHHhHHHHHHHHHH
Q 011909 212 KRASLEERLKLLEA 225 (475)
Q Consensus 212 kLasLEeKl~~Lka 225 (475)
++..|+.++.+|.+
T Consensus 66 ~v~eLe~everL~~ 79 (104)
T 3s9g_A 66 RVRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 44455555555533
No 212
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.50 E-value=1.6e+02 Score=20.74 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
+||++..+.++.+...+|..+..|+.-..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 56777777777777777777777666544
No 213
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.07 E-value=2.1e+02 Score=23.18 Aligned_cols=62 Identities=21% Similarity=0.168 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhh-----hhhh--hhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909 269 NRQLKENVSSLRSQLSSDESK-----KLQH--ATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLS 330 (475)
Q Consensus 269 IqqLReqLdelqseiqsLE~E-----eal~--e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~ 330 (475)
-..+++.+..++.-++.+... .++- .++-=+.|..+...+...++.|..+|++|..++..|.
T Consensus 18 R~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 18 RNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777888888776311 1111 1445566777777777777888888888888887773
No 214
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=23.02 E-value=2.4e+02 Score=21.20 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=26.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 214 (475)
Q Consensus 174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLa 214 (475)
+...|..|+.++.....+.+....+|..|.+..-.|...++
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44556666666666666666666777777777766655443
No 215
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.68 E-value=2.1e+02 Score=20.22 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 248 ITQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 248 iksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
+..|...|.+|-.....|..++..|+..+.+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 35677777777777777777877777776654
No 216
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.61 E-value=7.2e+02 Score=26.45 Aligned_cols=15 Identities=7% Similarity=0.209 Sum_probs=8.4
Q ss_pred hhhhhchHHHHHHHh
Q 011909 296 SEQKDFSTQIEAAGA 310 (475)
Q Consensus 296 eEn~~Ls~E~E~l~s 310 (475)
+.++.+.-+++.+.+
T Consensus 177 ~~Ye~~QKqLeQv~a 191 (491)
T 1m1j_A 177 EGYDNIQKHLTQASS 191 (491)
T ss_dssp TTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhc
Confidence 355556666666643
No 217
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.60 E-value=3.6e+02 Score=22.95 Aligned_cols=61 Identities=28% Similarity=0.251 Sum_probs=34.2
Q ss_pred HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011909 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 167 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~ 167 (475)
||.|+++-|.- .|+ .+.-|++.|++ |...|.+|++++=++-.++..-.-.|.+|...+...
T Consensus 29 iLaER~kpL~i---d~l-~~~~L~e~~ke--------------Lh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 29 ILAERRKVLAI---DHL-NEDQLREKAKE--------------LWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHH---TTC-CHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCCCC---CCC-CHHHHHHHHHH--------------HHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777721 121 22335555555 455555566666666666666666666666655443
No 218
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.16 E-value=94 Score=23.31 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 305 IEAAGALIDKLITENIELVEKVNDLSVKLDR 335 (475)
Q Consensus 305 ~E~l~s~vekL~~enq~LeEe~neL~~~l~~ 335 (475)
++.|...|..|..+|..|..++..|...+.+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~ 54 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLYSH 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 219
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.14 E-value=3.4e+02 Score=22.53 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=8.7
Q ss_pred HHHhHHHHHHHHHhh
Q 011909 149 KEATLEETIKQLRNQ 163 (475)
Q Consensus 149 kkA~lE~kIKdLe~~ 163 (475)
..+.--|+.+.+...
T Consensus 36 RgyAq~CR~Kr~~q~ 50 (90)
T 2wt7_B 36 RGYAQSCRYKRVQQK 50 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 445555666666554
No 220
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.85 E-value=2.2e+02 Score=22.98 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
.++...+..++..|..+|..|..++..|+..+..|
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666665555544
No 221
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.82 E-value=3.8e+02 Score=27.45 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909 196 EQKISQLRDESAALNMKRASLEERLKLL 223 (475)
Q Consensus 196 ~peiekL~~Ee~~LkqkLasLEeKl~~L 223 (475)
..+...+.++...+..++..+++++..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555543
No 222
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.81 E-value=3.1e+02 Score=22.64 Aligned_cols=54 Identities=7% Similarity=0.099 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909 134 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 193 (475)
Q Consensus 134 etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla 193 (475)
..+++++...+.+-.-+..|++.+..+-. ..+..+..+|..++.+++.+..++.
T Consensus 38 ~~i~~ie~~l~EA~ell~qMelE~r~~p~------~~R~~~~~klr~Yk~dL~~lk~elk 91 (102)
T 1vcs_A 38 QMVANVEKQLEEARELLEQMDLEVREIPP------QSRGMYSNRMRSYKQEMGKLETDFK 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCT------TTHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777776632 2244566677777777766555543
No 223
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.77 E-value=2.4e+02 Score=24.11 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909 183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 221 (475)
Q Consensus 183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~ 221 (475)
.|...+.+.....+.+++.|+.+..+|..++...+..+.
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~ 42 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQ 42 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666667777777777777777766554443
No 224
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.62 E-value=1.7e+02 Score=22.01 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 011909 194 ALEQKISQLRDESAALNMKRAS 215 (475)
Q Consensus 194 ~L~peiekL~~Ee~~LkqkLas 215 (475)
.|..++..|..++..|...+..
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333333
No 225
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=21.43 E-value=3.2e+02 Score=21.89 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDL 145 (475)
Q Consensus 111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~ 145 (475)
|.+.|..|..|.+.+-.++...++....+..+.-.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~ 36 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEIS 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888877777666643333
No 226
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.24 E-value=1.4e+02 Score=22.29 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 113 GTVQQLQNECDLYKEKVATLEETIQQLQRQ 142 (475)
Q Consensus 113 e~IkqLq~El~~lk~kl~~L~etikQLe~d 142 (475)
..+..|+.+|+.++.++..-....+.+..+
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~e 41 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEE 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444444443333333333333
No 227
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.18 E-value=3e+02 Score=21.91 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=16.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 176 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM 211 (475)
Q Consensus 176 e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~Lkq 211 (475)
..|..|+.++.....+++....+|..|.+..-.|..
T Consensus 12 ~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~ 47 (74)
T 2xv5_A 12 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDM 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555544433
No 228
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=21.10 E-value=4.7e+02 Score=23.78 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHH
Q 011909 109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQ----KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE 184 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQ----kkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~E 184 (475)
.|-...+.+|...|.....-+..-+.-..||-.++..++. --..+|.-|..+.+. .++ +..++..
T Consensus 16 l~G~~Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA----~~~-------~d~lekK 84 (158)
T 3tul_A 16 LLGDVSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTA----KSV-------YDAATKK 84 (158)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH----HHH-------HHHHHHH
Confidence 3445566777777777776666656666666666655554 222333333333222 222 2223333
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909 185 KEFWLQKEA---ALEQKISQLRDESAALNMKRASLEERL 220 (475)
Q Consensus 185 I~~~~qEla---~L~peiekL~~Ee~~LkqkLasLEeKl 220 (475)
+.....+++ -=.|+|.+++.....+.....+....+
T Consensus 85 l~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~ 123 (158)
T 3tul_A 85 LTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEAL 123 (158)
T ss_dssp HHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333443 335677777776666665555544333
No 229
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.89 E-value=1.5e+02 Score=20.55 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
+||++..+.++.++..++..+..|+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45666666666666666666665554
No 230
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.84 E-value=1.8e+02 Score=20.57 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 249 TQLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 249 ksLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
..|..+|.+|-.....|..|+..|+.-+.+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 4677778888888888888888777766554
No 231
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=20.83 E-value=97 Score=21.96 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=18.3
Q ss_pred hhhchHHHHHHHhHHHH---HHHHHHHHHHHHH
Q 011909 298 QKDFSTQIEAAGALIDK---LITENIELVEKVN 327 (475)
Q Consensus 298 n~~Ls~E~E~l~s~vek---L~~enq~LeEe~n 327 (475)
++-|..=.+++++.+++ |-++|+.|+.++.
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666666665 5677777776554
No 232
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.82 E-value=1.6e+02 Score=21.40 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011909 186 EFWLQKEAALEQKISQLRDESAALNMKRASLEE 218 (475)
Q Consensus 186 ~~~~qEla~L~peiekL~~Ee~~LkqkLasLEe 218 (475)
+...|++.++..+|.+....-+.|..++..|++
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777666666666666654
No 233
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.82 E-value=1.9e+02 Score=23.79 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=24.9
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 102 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQR 141 (475)
Q Consensus 102 ~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~ 141 (475)
+.--+++.-++..+..|..++..|..++..|..+...|..
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666667777777776666666666655554
No 234
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.70 E-value=1.5e+02 Score=20.65 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRN 162 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~ 162 (475)
.||++....+++....+|..+..|+.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56777777777777777777766664
No 235
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.56 E-value=1.7e+02 Score=20.29 Aligned_cols=27 Identities=4% Similarity=-0.037 Sum_probs=21.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 011909 306 EAAGALIDKLITENIELVEKVNDLSVK 332 (475)
Q Consensus 306 E~l~s~vekL~~enq~LeEe~neL~~~ 332 (475)
.+|-..|+.|+.+|..|+.+|.-|..-
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356678888899999999888888653
No 236
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.55 E-value=2.6e+02 Score=28.71 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011909 118 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 164 (475)
Q Consensus 118 Lq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~ 164 (475)
|++++..+..+...|...++++..++...-++....+...+.|.+.+
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~ 54 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTV 54 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444445554443
No 237
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.53 E-value=3.6e+02 Score=22.24 Aligned_cols=52 Identities=8% Similarity=0.150 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHH
Q 011909 134 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 191 (475)
Q Consensus 134 etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qE 191 (475)
..+++++...+.+-.-+..|+..++.+- ...+..+..+|..++++++.+..+
T Consensus 49 ~~i~~ie~~ldEA~eLl~qMelE~r~~p------~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 49 KLVRDFDEKQQEANETLAEMEEELRYAP------LTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSC------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666777777777777777777662 223456777777777777665444
No 238
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.38 E-value=1.6e+02 Score=23.32 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909 246 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 284 (475)
Q Consensus 246 ~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiq 284 (475)
..+..-...+.+|+........+|+.|+..|+++++=+.
T Consensus 18 ~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 18 KILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444455677777777788888888888887766544
No 239
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.37 E-value=1.9e+02 Score=21.55 Aligned_cols=32 Identities=34% Similarity=0.518 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQ 140 (475)
Q Consensus 109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe 140 (475)
+-|+..+..|+.....++..++-|+.+|.+|+
T Consensus 20 aklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 240
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=20.34 E-value=3.3e+02 Score=21.74 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909 110 TLEGTVQQLQNECDLYKEKVATLEETIQ 137 (475)
Q Consensus 110 ~l~e~IkqLq~El~~lk~kl~~L~etik 137 (475)
.|.+.|..|..|.+.+-.++..+++...
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~ 30 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYK 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444444333
No 241
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.32 E-value=91 Score=30.53 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=17.3
Q ss_pred HHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 011909 93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVAT 131 (475)
Q Consensus 93 ti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~ 131 (475)
+++.|+.+++..-++...|...++.++.++..++.+++.
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 242
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.29 E-value=4.3e+02 Score=22.95 Aligned_cols=86 Identities=16% Similarity=0.299 Sum_probs=44.2
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHh
Q 011909 171 EGGLEMNIANLQSEKEFWLQKEA--------ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIA 242 (475)
Q Consensus 171 ea~Lee~I~qLq~EI~~~~qEla--------~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~IS 242 (475)
+.+..+.|..++.-+..|..-.. .+..-...|.+.-..++..|..|+..+....+....|= |+- ..|+
T Consensus 33 k~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~---l~~-~Ei~ 108 (130)
T 4dnd_A 33 RGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFK---LPA-GDLQ 108 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHC---CCH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcC---CCH-HHHH
Confidence 34456667777777777764332 12223344555556666666666666666655554441 111 1244
Q ss_pred hhHHHHHHHHHHHHHhHH
Q 011909 243 GLSVDITQLRMQVVELEE 260 (475)
Q Consensus 243 sl~~EiksLqeEVkeLEe 260 (475)
..+.-+..++.+|..++.
T Consensus 109 ~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 109 ERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 243
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.25 E-value=1.4e+02 Score=24.23 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909 250 QLRMQVVELEESRNNLLQENRQLKENVSSL 279 (475)
Q Consensus 250 sLqeEVkeLEesr~eL~kEIqqLReqLdel 279 (475)
.|+.+...+......|..++..|+.+|..+
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444445555555565555544
No 244
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.24 E-value=1.4e+02 Score=21.65 Aligned_cols=31 Identities=13% Similarity=0.298 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909 255 VVELEESRNNLLQENRQLKENVSSLRSQLSS 285 (475)
Q Consensus 255 VkeLEesr~eL~kEIqqLReqLdelqseiqs 285 (475)
+.++.+....+++.|..|-.+|+.+...+++
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456666666777777777777776665554
No 245
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=20.15 E-value=3.8e+02 Score=22.36 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=51.5
Q ss_pred HHHHHHHhhhcchhhhhHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909 89 ILEETVKHLRNERESHIQKEATLEGTV-QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 166 (475)
Q Consensus 89 ~~eeti~~l~~e~~~~~~~e~~l~e~I-kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s 166 (475)
=+.|-+-.++-|-|...+.=..++-.- .+++..+....+++.....+.-+|+. .+.+-+...|..|..|+...+.
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~---~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYEREL---THRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777778877666555554333 36777787788888888888888876 5677788899999999988764
No 246
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.09 E-value=1.6e+02 Score=20.58 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909 137 QQLQRQNDLRMQKEATLEETIKQLRNQ 163 (475)
Q Consensus 137 kQLe~d~~~~LQkkA~lE~kIKdLe~~ 163 (475)
.||++..+.++.+.+.+|..+..|+.-
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567777777777777777777666643
No 247
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.07 E-value=1.3e+02 Score=24.07 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909 248 ITQLRMQVVELEESRNNLLQENRQLKENVS 277 (475)
Q Consensus 248 iksLqeEVkeLEesr~eL~kEIqqLReqLd 277 (475)
|..|+.+...+......|..++..|+.+|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555544
No 248
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=20.00 E-value=3.9e+02 Score=22.45 Aligned_cols=49 Identities=20% Similarity=0.149 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909 117 QLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165 (475)
Q Consensus 117 qLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~ 165 (475)
-|+..+..-+..-+.|-..+++|+.-...+-..-+.-+-+|.+|+..++
T Consensus 8 ~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akid 56 (101)
T 1d7m_A 8 GLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344333333444444444444444444444444445555544433
Done!