Query 011910
Match_columns 475
No_of_seqs 422 out of 3543
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:34:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 3.3E-87 7.1E-92 649.4 36.5 387 78-472 3-392 (428)
2 PLN00043 elongation factor 1-a 100.0 1.2E-75 2.6E-80 602.6 43.7 388 79-472 4-395 (447)
3 PTZ00141 elongation factor 1- 100.0 7.1E-75 1.5E-79 597.3 45.2 389 79-473 4-396 (446)
4 KOG0459 Polypeptide release fa 100.0 1.4E-75 3E-80 560.6 30.1 393 76-473 73-466 (501)
5 KOG0458 Elongation factor 1 al 100.0 1.6E-72 3.5E-77 564.3 35.6 394 74-472 169-567 (603)
6 PRK12317 elongation factor 1-a 100.0 1.2E-69 2.5E-74 560.3 44.0 379 79-472 3-386 (425)
7 TIGR00483 EF-1_alpha translati 100.0 6.8E-69 1.5E-73 554.4 44.3 383 79-473 4-389 (426)
8 TIGR02034 CysN sulfate adenyly 100.0 1.9E-66 4E-71 531.2 41.1 370 83-473 1-374 (406)
9 PRK05124 cysN sulfate adenylyl 100.0 6.9E-66 1.5E-70 534.5 42.8 376 78-473 23-402 (474)
10 COG2895 CysN GTPases - Sulfate 100.0 2.3E-66 5E-71 490.6 32.4 374 79-473 3-380 (431)
11 PRK05506 bifunctional sulfate 100.0 3.7E-62 8E-67 526.2 42.9 374 79-473 21-398 (632)
12 PLN03126 Elongation factor Tu; 100.0 3.7E-60 7.9E-65 489.4 38.8 360 78-472 77-448 (478)
13 CHL00071 tufA elongation facto 100.0 5.3E-59 1.2E-63 477.0 40.2 360 78-472 8-379 (409)
14 PRK12735 elongation factor Tu; 100.0 1E-58 2.3E-63 473.0 39.9 349 79-472 9-366 (396)
15 PRK00049 elongation factor Tu; 100.0 2.1E-58 4.4E-63 470.4 40.8 349 79-472 9-366 (396)
16 PRK12736 elongation factor Tu; 100.0 3.6E-58 7.8E-63 468.7 39.6 347 79-472 9-364 (394)
17 TIGR00485 EF-Tu translation el 100.0 1.8E-57 3.9E-62 464.2 39.5 347 79-472 9-364 (394)
18 PLN03127 Elongation factor Tu; 100.0 1.1E-56 2.3E-61 461.6 38.9 351 74-472 53-417 (447)
19 PTZ00327 eukaryotic translatio 100.0 1.4E-53 3E-58 437.4 34.7 335 78-470 30-436 (460)
20 KOG0460 Mitochondrial translat 100.0 1.1E-53 2.3E-58 401.9 21.7 360 78-468 50-422 (449)
21 COG5258 GTPBP1 GTPase [General 100.0 1.6E-51 3.4E-56 392.6 28.2 343 78-468 113-513 (527)
22 COG0050 TufB GTPases - transla 100.0 2.6E-51 5.7E-56 379.1 28.2 326 78-437 8-342 (394)
23 TIGR03680 eif2g_arch translati 100.0 8.5E-51 1.9E-55 416.1 34.1 329 80-467 2-389 (406)
24 PRK04000 translation initiatio 100.0 2.7E-50 5.9E-55 411.9 34.0 330 79-467 6-394 (411)
25 KOG0463 GTP-binding protein GP 100.0 1.4E-51 3E-56 391.5 20.0 354 82-468 133-533 (641)
26 PRK10512 selenocysteinyl-tRNA- 100.0 1.5E-49 3.2E-54 422.5 35.5 320 84-469 2-325 (614)
27 TIGR00475 selB selenocysteine- 100.0 7.8E-48 1.7E-52 408.4 36.5 322 83-469 1-324 (581)
28 COG3276 SelB Selenocysteine-sp 100.0 1E-46 2.3E-51 369.3 29.0 298 84-442 2-302 (447)
29 KOG1143 Predicted translation 100.0 2.7E-45 5.9E-50 348.4 22.4 356 81-468 166-569 (591)
30 TIGR01394 TypA_BipA GTP-bindin 100.0 8.8E-41 1.9E-45 353.8 27.8 279 82-395 1-289 (594)
31 COG5257 GCD11 Translation init 100.0 3.8E-40 8.3E-45 308.6 28.6 330 80-468 8-396 (415)
32 KOG0462 Elongation factor-type 100.0 3.1E-40 6.6E-45 328.4 21.2 267 80-394 58-332 (650)
33 COG1217 TypA Predicted membran 100.0 3.6E-39 7.8E-44 314.9 26.9 281 80-395 3-293 (603)
34 COG0481 LepA Membrane GTPase L 100.0 1.5E-38 3.2E-43 311.5 25.4 267 78-394 5-283 (603)
35 cd01883 EF1_alpha Eukaryotic e 100.0 1.3E-38 2.7E-43 300.3 22.4 218 84-304 1-218 (219)
36 PRK10218 GTP-binding protein; 100.0 4.7E-38 1E-42 332.4 28.1 279 80-395 3-293 (607)
37 PRK05433 GTP-binding protein L 100.0 1E-37 2.2E-42 331.7 27.2 268 80-396 5-283 (600)
38 TIGR01393 lepA GTP-binding pro 100.0 1.7E-37 3.8E-42 329.6 28.8 267 81-396 2-279 (595)
39 KOG0052 Translation elongation 100.0 3.9E-39 8.5E-44 312.5 13.4 330 79-472 4-337 (391)
40 cd04166 CysN_ATPS CysN_ATPS su 100.0 8.4E-37 1.8E-41 285.7 20.4 207 84-304 1-207 (208)
41 KOG0461 Selenocysteine-specifi 100.0 1.6E-36 3.5E-41 286.1 20.0 307 82-441 7-331 (522)
42 cd01884 EF_Tu EF-Tu subfamily. 100.0 1.5E-34 3.2E-39 266.7 19.2 191 82-303 2-193 (195)
43 COG0480 FusA Translation elong 100.0 2.2E-33 4.7E-38 298.5 27.3 273 79-394 7-392 (697)
44 PRK07560 elongation factor EF- 100.0 1.3E-33 2.7E-38 308.6 26.1 288 79-394 17-375 (731)
45 PRK00007 elongation factor G; 100.0 6.2E-33 1.3E-37 301.5 27.9 282 78-394 6-394 (693)
46 PRK05306 infB translation init 100.0 7.4E-33 1.6E-37 298.9 27.9 251 78-393 286-543 (787)
47 TIGR00487 IF-2 translation ini 100.0 9.7E-33 2.1E-37 291.8 27.4 251 78-392 83-340 (587)
48 PRK12739 elongation factor G; 100.0 1.2E-32 2.6E-37 299.4 26.8 275 77-394 3-391 (691)
49 PRK00741 prfC peptide chain re 100.0 7.1E-32 1.5E-36 282.5 27.1 280 80-394 8-380 (526)
50 COG0532 InfB Translation initi 100.0 4.8E-32 1E-36 272.9 23.9 238 80-380 3-249 (509)
51 KOG1145 Mitochondrial translat 100.0 2.6E-32 5.7E-37 271.6 20.7 257 73-393 144-407 (683)
52 TIGR00484 EF-G translation elo 100.0 3.1E-31 6.8E-36 288.6 29.0 274 77-394 5-392 (689)
53 PF00009 GTP_EFTU: Elongation 100.0 7.5E-32 1.6E-36 248.3 18.3 175 80-280 1-178 (188)
54 TIGR00503 prfC peptide chain r 100.0 6.7E-31 1.4E-35 275.2 26.4 276 80-394 9-381 (527)
55 PRK13351 elongation factor G; 100.0 1.1E-30 2.4E-35 284.8 27.4 274 78-394 4-390 (687)
56 KOG0468 U5 snRNP-specific prot 100.0 1.8E-31 3.9E-36 269.5 19.4 213 21-255 56-290 (971)
57 CHL00189 infB translation init 100.0 1.1E-30 2.4E-35 279.6 24.8 252 78-393 240-501 (742)
58 PRK04004 translation initiatio 100.0 2.8E-30 6.2E-35 273.7 25.8 252 79-380 3-317 (586)
59 TIGR00490 aEF-2 translation el 100.0 2.4E-30 5.2E-35 282.2 22.2 288 79-394 16-374 (720)
60 TIGR00491 aIF-2 translation in 100.0 9.7E-30 2.1E-34 268.5 25.6 258 81-390 3-323 (590)
61 COG4108 PrfC Peptide chain rel 100.0 1.8E-30 3.9E-35 253.0 16.5 280 80-394 10-382 (528)
62 PRK12740 elongation factor G; 100.0 2.8E-29 6E-34 273.5 26.3 264 88-394 1-373 (668)
63 PLN00116 translation elongatio 100.0 1.2E-29 2.6E-34 280.4 23.4 290 78-394 15-471 (843)
64 KOG1144 Translation initiation 100.0 3E-30 6.5E-35 263.3 15.2 247 79-375 472-794 (1064)
65 KOG0465 Mitochondrial elongati 100.0 1E-29 2.3E-34 255.8 16.5 275 79-393 36-420 (721)
66 PTZ00416 elongation factor 2; 100.0 9.4E-29 2E-33 272.8 24.1 153 79-254 16-184 (836)
67 cd01885 EF2 EF2 (for archaea a 100.0 1.5E-28 3.2E-33 230.6 15.1 172 83-277 1-200 (222)
68 KOG0466 Translation initiation 100.0 1.1E-29 2.5E-34 236.3 6.6 329 79-465 35-438 (466)
69 KOG0469 Elongation factor 2 [T 99.9 1.4E-27 2.9E-32 235.0 13.9 290 79-393 16-473 (842)
70 PRK14845 translation initiatio 99.9 8.4E-26 1.8E-30 248.9 26.5 231 140-391 488-781 (1049)
71 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.2E-25 2.6E-30 211.9 16.7 192 84-304 1-224 (224)
72 KOG0467 Translation elongation 99.9 6E-25 1.3E-29 226.3 21.6 177 78-278 5-206 (887)
73 cd01886 EF-G Elongation factor 99.9 1E-25 2.2E-30 218.0 14.3 174 84-288 1-175 (270)
74 cd01888 eIF2_gamma eIF2-gamma 99.9 1.9E-25 4.2E-30 208.1 15.2 157 83-280 1-190 (203)
75 cd01889 SelB_euk SelB subfamil 99.9 5.1E-25 1.1E-29 203.5 16.5 163 83-280 1-177 (192)
76 cd04168 TetM_like Tet(M)-like 99.9 2.2E-24 4.8E-29 205.1 16.1 144 84-249 1-144 (237)
77 cd04167 Snu114p Snu114p subfam 99.9 5.7E-24 1.2E-28 199.7 17.3 165 83-269 1-176 (213)
78 cd01891 TypA_BipA TypA (tyrosi 99.9 7.2E-24 1.6E-28 196.1 16.9 171 82-280 2-173 (194)
79 KOG0464 Elongation factor G [T 99.9 4.3E-25 9.3E-30 213.2 6.5 277 79-394 34-419 (753)
80 cd01890 LepA LepA subfamily. 99.9 2.8E-23 6.2E-28 189.2 15.8 163 83-280 1-168 (179)
81 cd04169 RF3 RF3 subfamily. Pe 99.9 7.7E-23 1.7E-27 197.7 13.8 138 82-236 2-139 (267)
82 cd04171 SelB SelB subfamily. 99.9 6.3E-22 1.4E-26 177.1 16.8 156 84-281 2-158 (164)
83 cd00881 GTP_translation_factor 99.9 4.4E-21 9.5E-26 175.8 16.3 170 84-280 1-178 (189)
84 cd04170 EF-G_bact Elongation f 99.9 5.3E-21 1.1E-25 186.0 16.0 132 84-236 1-132 (268)
85 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1E-19 2.2E-24 163.7 14.7 155 83-281 1-158 (168)
86 PF02421 FeoB_N: Ferrous iron 99.8 7.6E-20 1.6E-24 160.9 10.7 144 83-280 1-152 (156)
87 COG1160 Predicted GTPases [Gen 99.8 2.1E-19 4.6E-24 179.0 14.5 157 81-282 177-344 (444)
88 COG1160 Predicted GTPases [Gen 99.8 4E-19 8.7E-24 177.0 13.4 145 83-281 4-157 (444)
89 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6.1E-19 1.3E-23 158.6 11.1 156 84-280 1-160 (167)
90 PRK00093 GTP-binding protein D 99.8 1.3E-18 2.8E-23 181.0 15.0 156 80-282 171-337 (435)
91 TIGR03594 GTPase_EngA ribosome 99.8 1.2E-18 2.7E-23 180.8 14.3 157 80-282 170-337 (429)
92 cd01895 EngA2 EngA2 subfamily. 99.8 5.7E-18 1.2E-22 152.4 15.1 155 82-281 2-167 (174)
93 COG1159 Era GTPase [General fu 99.8 1E-17 2.2E-22 158.5 15.4 153 80-281 4-164 (298)
94 TIGR00436 era GTP-binding prot 99.8 1.1E-17 2.4E-22 162.7 16.0 148 84-282 2-157 (270)
95 cd01894 EngA1 EngA1 subfamily. 99.8 1.1E-17 2.3E-22 148.4 13.4 142 86-281 1-150 (157)
96 TIGR03598 GTPase_YsxC ribosome 99.7 1.8E-17 3.9E-22 151.3 14.0 154 77-278 13-179 (179)
97 cd01864 Rab19 Rab19 subfamily. 99.7 1.5E-17 3.2E-22 149.5 12.2 152 81-281 2-158 (165)
98 TIGR03594 GTPase_EngA ribosome 99.7 3E-17 6.4E-22 170.5 14.6 144 84-281 1-152 (429)
99 cd01879 FeoB Ferrous iron tran 99.7 2.9E-17 6.3E-22 146.0 11.8 141 87-281 1-149 (158)
100 PRK15494 era GTPase Era; Provi 99.7 4.5E-17 9.8E-22 163.1 14.4 152 80-282 50-209 (339)
101 cd03693 EF1_alpha_II EF1_alpha 99.7 4.5E-17 9.8E-22 131.2 11.3 87 309-395 2-90 (91)
102 PRK03003 GTP-binding protein D 99.7 3.9E-17 8.4E-22 171.0 14.0 155 81-282 210-375 (472)
103 cd04154 Arl2 Arl2 subfamily. 99.7 3.5E-17 7.5E-22 148.4 10.7 151 81-281 13-167 (173)
104 cd04124 RabL2 RabL2 subfamily. 99.7 1.8E-16 3.9E-21 142.0 15.0 149 83-282 1-151 (161)
105 cd04157 Arl6 Arl6 subfamily. 99.7 6.8E-17 1.5E-21 144.3 12.1 150 84-281 1-156 (162)
106 PRK03003 GTP-binding protein D 99.7 9.9E-17 2.2E-21 167.9 14.6 148 81-282 37-192 (472)
107 PRK00089 era GTPase Era; Revie 99.7 2.7E-16 5.8E-21 154.9 16.3 152 81-281 4-163 (292)
108 cd01898 Obg Obg subfamily. Th 99.7 1.5E-16 3.3E-21 143.3 13.0 148 84-281 2-163 (170)
109 cd04089 eRF3_II eRF3_II: domai 99.7 1.5E-16 3.2E-21 125.6 11.0 82 311-392 1-82 (82)
110 cd04145 M_R_Ras_like M-Ras/R-R 99.7 8.6E-17 1.9E-21 143.9 11.0 151 82-281 2-156 (164)
111 TIGR00231 small_GTP small GTP- 99.7 1.5E-16 3.3E-21 140.2 12.2 146 83-281 2-156 (161)
112 cd04113 Rab4 Rab4 subfamily. 99.7 1.3E-16 2.9E-21 142.5 12.0 149 83-281 1-154 (161)
113 cd01897 NOG NOG1 is a nucleola 99.7 2.3E-16 4.9E-21 142.0 13.5 149 83-281 1-160 (168)
114 cd04151 Arl1 Arl1 subfamily. 99.7 1.6E-16 3.4E-21 141.8 12.0 148 84-281 1-152 (158)
115 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.1E-16 2.4E-21 146.6 11.0 160 82-282 3-163 (183)
116 smart00175 RAB Rab subfamily o 99.7 2.8E-16 6.1E-21 140.5 13.4 148 83-281 1-154 (164)
117 cd01861 Rab6 Rab6 subfamily. 99.7 1.8E-16 4E-21 141.4 12.0 148 84-281 2-154 (161)
118 cd01860 Rab5_related Rab5-rela 99.7 3.4E-16 7.3E-21 140.0 13.7 151 83-281 2-155 (163)
119 cd04149 Arf6 Arf6 subfamily. 99.7 2.3E-16 5E-21 142.5 11.8 150 81-280 8-161 (168)
120 cd01867 Rab8_Rab10_Rab13_like 99.7 3.4E-16 7.4E-21 141.0 12.8 152 82-281 3-157 (167)
121 cd04138 H_N_K_Ras_like H-Ras/N 99.7 4.5E-16 9.7E-21 138.7 13.0 149 83-281 2-154 (162)
122 cd04164 trmE TrmE (MnmE, ThdF, 99.7 3.7E-16 8E-21 138.3 12.3 139 83-281 2-149 (157)
123 PRK00093 GTP-binding protein D 99.7 4.8E-16 1E-20 161.7 15.0 145 83-281 2-154 (435)
124 cd03698 eRF3_II_like eRF3_II_l 99.7 4E-16 8.6E-21 123.5 11.0 82 311-392 1-83 (83)
125 cd01863 Rab18 Rab18 subfamily. 99.7 4.1E-16 9E-21 139.2 12.5 150 83-281 1-154 (161)
126 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 2.4E-16 5.1E-21 143.2 11.0 150 82-281 15-168 (174)
127 cd01862 Rab7 Rab7 subfamily. 99.7 1.1E-15 2.4E-20 137.9 15.3 150 83-282 1-160 (172)
128 PRK09554 feoB ferrous iron tra 99.7 5.4E-16 1.2E-20 169.3 15.6 146 82-281 3-160 (772)
129 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 5.1E-16 1.1E-20 139.5 12.9 151 82-282 2-157 (166)
130 cd04158 ARD1 ARD1 subfamily. 99.7 2.2E-16 4.7E-21 142.7 10.5 150 84-282 1-154 (169)
131 PRK15467 ethanolamine utilizat 99.7 2.3E-16 5E-21 141.0 10.4 134 84-282 3-140 (158)
132 PRK09518 bifunctional cytidyla 99.7 5.6E-16 1.2E-20 169.7 15.4 153 76-282 269-429 (712)
133 PRK09518 bifunctional cytidyla 99.7 4E-16 8.7E-21 170.9 14.1 155 81-282 449-614 (712)
134 cd04114 Rab30 Rab30 subfamily. 99.7 6.9E-16 1.5E-20 138.9 12.9 152 80-281 5-161 (169)
135 smart00173 RAS Ras subfamily o 99.7 3.6E-16 7.7E-21 140.1 10.8 149 84-281 2-154 (164)
136 PRK04213 GTP-binding protein; 99.7 9.3E-16 2E-20 142.5 13.9 155 81-281 8-184 (201)
137 PLN00223 ADP-ribosylation fact 99.7 8.2E-16 1.8E-20 140.6 13.1 151 80-282 15-171 (181)
138 cd04116 Rab9 Rab9 subfamily. 99.7 2.2E-15 4.7E-20 136.0 15.6 151 81-281 4-163 (170)
139 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.3E-15 2.9E-20 137.6 14.2 149 82-280 2-160 (170)
140 cd01868 Rab11_like Rab11-like. 99.7 8.3E-16 1.8E-20 137.9 12.7 149 83-281 4-157 (165)
141 cd04106 Rab23_lke Rab23-like s 99.7 1.1E-15 2.3E-20 136.7 13.4 148 84-281 2-155 (162)
142 cd04127 Rab27A Rab27a subfamil 99.7 9.8E-16 2.1E-20 139.6 13.1 154 81-282 3-170 (180)
143 cd00154 Rab Rab family. Rab G 99.7 1.7E-15 3.6E-20 133.9 14.1 150 83-280 1-153 (159)
144 cd04119 RJL RJL (RabJ-Like) su 99.7 1.2E-15 2.6E-20 136.8 13.2 152 83-282 1-160 (168)
145 cd01866 Rab2 Rab2 subfamily. 99.7 9.4E-16 2E-20 138.3 12.6 152 82-281 4-158 (168)
146 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.2E-15 2.6E-20 141.9 13.6 150 84-282 2-161 (201)
147 cd04156 ARLTS1 ARLTS1 subfamil 99.7 7.1E-16 1.5E-20 137.6 11.5 149 84-281 1-154 (160)
148 cd04150 Arf1_5_like Arf1-Arf5- 99.7 7.3E-16 1.6E-20 137.9 11.4 148 84-281 2-153 (159)
149 cd04122 Rab14 Rab14 subfamily. 99.7 6E-16 1.3E-20 139.2 10.8 151 83-281 3-156 (166)
150 cd04120 Rab12 Rab12 subfamily. 99.7 1.3E-15 2.9E-20 141.4 13.4 150 84-282 2-156 (202)
151 cd01865 Rab3 Rab3 subfamily. 99.7 1.2E-15 2.6E-20 137.1 12.7 152 83-282 2-156 (165)
152 cd04163 Era Era subfamily. Er 99.7 2.3E-15 4.9E-20 134.2 14.3 151 82-281 3-161 (168)
153 cd01878 HflX HflX subfamily. 99.6 8.5E-16 1.8E-20 143.2 11.9 147 80-281 39-197 (204)
154 cd04121 Rab40 Rab40 subfamily. 99.6 3.3E-15 7E-20 137.4 15.4 152 81-282 5-160 (189)
155 cd04140 ARHI_like ARHI subfami 99.6 2.4E-15 5.3E-20 135.1 14.3 149 83-281 2-157 (165)
156 PRK12299 obgE GTPase CgtA; Rev 99.6 1.7E-15 3.6E-20 150.9 14.3 165 68-282 144-321 (335)
157 PRK00454 engB GTP-binding prot 99.6 2.2E-15 4.7E-20 139.3 14.2 154 78-281 20-186 (196)
158 TIGR02528 EutP ethanolamine ut 99.6 5.1E-16 1.1E-20 135.8 9.3 132 84-281 2-137 (142)
159 cd00879 Sar1 Sar1 subfamily. 99.6 5.4E-16 1.2E-20 142.7 9.9 152 81-281 18-183 (190)
160 cd00878 Arf_Arl Arf (ADP-ribos 99.6 9.2E-16 2E-20 136.6 11.1 148 84-281 1-152 (158)
161 PF10662 PduV-EutP: Ethanolami 99.6 7E-16 1.5E-20 132.8 9.7 132 83-280 2-137 (143)
162 cd04142 RRP22 RRP22 subfamily. 99.6 2.4E-15 5.1E-20 139.5 14.0 151 83-282 1-167 (198)
163 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.3E-15 5E-20 136.2 13.5 152 84-282 2-158 (170)
164 smart00177 ARF ARF-like small 99.6 1.2E-15 2.5E-20 138.8 11.6 152 81-282 12-167 (175)
165 cd04109 Rab28 Rab28 subfamily. 99.6 7.7E-15 1.7E-19 138.0 17.2 149 84-282 2-159 (215)
166 cd04136 Rap_like Rap-like subf 99.6 2.6E-15 5.7E-20 134.1 13.2 147 83-281 2-155 (163)
167 TIGR02729 Obg_CgtA Obg family 99.6 2.4E-15 5.2E-20 149.6 14.2 167 68-282 143-322 (329)
168 cd03694 GTPBP_II Domain II of 99.6 1.5E-15 3.2E-20 121.2 10.2 81 312-392 1-87 (87)
169 cd04128 Spg1 Spg1p. Spg1p (se 99.6 5.5E-15 1.2E-19 135.3 15.3 155 83-282 1-159 (182)
170 cd04112 Rab26 Rab26 subfamily. 99.6 8.9E-16 1.9E-20 141.6 10.2 150 84-282 2-156 (191)
171 PRK12296 obgE GTPase CgtA; Rev 99.6 3.1E-15 6.6E-20 154.5 15.2 174 64-282 141-333 (500)
172 cd04135 Tc10 TC10 subfamily. 99.6 1.2E-15 2.5E-20 138.2 10.6 157 83-281 1-166 (174)
173 cd04139 RalA_RalB RalA/RalB su 99.6 1.3E-15 2.9E-20 136.0 10.7 150 84-282 2-155 (164)
174 cd04110 Rab35 Rab35 subfamily. 99.6 3.5E-15 7.6E-20 138.6 13.7 152 81-282 5-160 (199)
175 cd00877 Ran Ran (Ras-related n 99.6 5.9E-15 1.3E-19 132.9 14.8 147 84-282 2-152 (166)
176 cd04161 Arl2l1_Arl13_like Arl2 99.6 2.8E-15 6E-20 135.2 12.7 147 84-279 1-159 (167)
177 cd04155 Arl3 Arl3 subfamily. 99.6 1.3E-15 2.8E-20 137.8 10.4 152 80-281 12-167 (173)
178 cd04159 Arl10_like Arl10-like 99.6 4.4E-15 9.4E-20 131.4 13.6 147 85-280 2-152 (159)
179 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 2.6E-15 5.6E-20 135.0 12.2 147 85-281 2-158 (164)
180 cd04175 Rap1 Rap1 subgroup. T 99.6 1.4E-15 3.1E-20 136.3 10.3 148 83-281 2-155 (164)
181 PRK12298 obgE GTPase CgtA; Rev 99.6 3.4E-15 7.4E-20 151.5 14.1 164 73-282 150-326 (390)
182 cd04147 Ras_dva Ras-dva subfam 99.6 2E-15 4.3E-20 140.1 11.5 150 84-282 1-156 (198)
183 PTZ00369 Ras-like protein; Pro 99.6 3.5E-15 7.6E-20 137.4 13.0 153 81-282 4-160 (189)
184 PLN03118 Rab family protein; P 99.6 4.2E-15 9E-20 139.3 13.7 153 81-282 13-170 (211)
185 cd04118 Rab24 Rab24 subfamily. 99.6 2.9E-15 6.2E-20 138.3 12.3 155 83-282 1-159 (193)
186 cd01893 Miro1 Miro1 subfamily. 99.6 4.2E-15 9.2E-20 133.8 13.1 153 84-282 2-157 (166)
187 smart00178 SAR Sar1p-like memb 99.6 3.2E-15 7E-20 137.0 12.5 157 80-281 15-177 (184)
188 COG2229 Predicted GTPase [Gene 99.6 7.7E-15 1.7E-19 129.0 14.1 161 79-280 7-169 (187)
189 cd04126 Rab20 Rab20 subfamily. 99.6 1.4E-15 2.9E-20 143.0 10.1 158 83-282 1-183 (220)
190 cd04144 Ras2 Ras2 subfamily. 99.6 2.7E-15 5.8E-20 138.3 11.6 148 84-282 1-156 (190)
191 PRK12297 obgE GTPase CgtA; Rev 99.6 8.4E-15 1.8E-19 149.5 15.9 165 67-282 143-320 (424)
192 smart00174 RHO Rho (Ras homolo 99.6 3.5E-15 7.5E-20 135.1 11.8 155 85-282 1-165 (174)
193 cd04123 Rab21 Rab21 subfamily. 99.6 4.1E-15 9E-20 132.4 11.7 149 83-281 1-154 (162)
194 PTZ00133 ADP-ribosylation fact 99.6 3.7E-15 7.9E-20 136.4 11.5 152 81-282 16-171 (182)
195 cd04101 RabL4 RabL4 (Rab-like4 99.6 6.1E-15 1.3E-19 132.1 12.7 153 83-281 1-156 (164)
196 PLN03110 Rab GTPase; Provision 99.6 5.7E-15 1.2E-19 138.9 13.1 152 81-282 11-167 (216)
197 cd03697 EFTU_II EFTU_II: Elong 99.6 2.7E-15 5.8E-20 119.9 9.2 83 312-394 1-87 (87)
198 cd01871 Rac1_like Rac1-like su 99.6 9.6E-15 2.1E-19 132.7 13.9 154 83-281 2-167 (174)
199 PF00025 Arf: ADP-ribosylation 99.6 8.6E-15 1.9E-19 133.1 13.5 153 79-280 11-167 (175)
200 TIGR03156 GTP_HflX GTP-binding 99.6 2.9E-15 6.2E-20 150.4 11.2 145 81-281 188-344 (351)
201 PRK05291 trmE tRNA modificatio 99.6 3.1E-15 6.8E-20 155.2 11.8 142 81-282 214-363 (449)
202 cd00157 Rho Rho (Ras homology) 99.6 4.5E-15 9.9E-20 133.7 11.4 158 83-281 1-165 (171)
203 cd04177 RSR1 RSR1 subgroup. R 99.6 3.4E-15 7.3E-20 134.6 10.3 151 83-281 2-156 (168)
204 cd04176 Rap2 Rap2 subgroup. T 99.6 1E-14 2.2E-19 130.6 13.1 147 83-281 2-155 (163)
205 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.1E-14 2.4E-19 132.4 13.4 151 83-281 2-167 (175)
206 cd00880 Era_like Era (E. coli 99.6 7E-15 1.5E-19 129.6 11.6 148 87-281 1-156 (163)
207 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 9.4E-15 2E-19 132.4 12.6 148 83-282 3-157 (172)
208 cd01882 BMS1 Bms1. Bms1 is an 99.6 4.8E-14 1E-18 133.3 17.8 166 79-304 36-202 (225)
209 cd03696 selB_II selB_II: this 99.6 8.5E-15 1.8E-19 116.0 10.5 81 312-392 1-83 (83)
210 cd04132 Rho4_like Rho4-like su 99.6 7.9E-15 1.7E-19 134.5 12.0 153 83-282 1-160 (187)
211 KOG0092 GTPase Rab5/YPT51 and 99.6 1.1E-14 2.4E-19 128.7 12.1 159 81-303 4-168 (200)
212 cd01892 Miro2 Miro2 subfamily. 99.6 8.7E-15 1.9E-19 132.3 11.9 156 80-282 2-159 (169)
213 PRK11058 GTPase HflX; Provisio 99.6 6.3E-15 1.4E-19 151.3 12.1 150 82-282 197-355 (426)
214 COG0218 Predicted GTPase [Gene 99.6 1.9E-14 4E-19 129.5 13.6 160 75-281 17-189 (200)
215 PLN03071 GTP-binding nuclear p 99.6 2.4E-14 5.1E-19 135.0 14.9 153 80-282 11-165 (219)
216 cd04137 RheB Rheb (Ras Homolog 99.6 8.7E-15 1.9E-19 133.4 11.4 149 83-282 2-156 (180)
217 COG0486 ThdF Predicted GTPase 99.6 7.1E-15 1.5E-19 147.2 11.6 147 80-282 215-369 (454)
218 cd04143 Rhes_like Rhes_like su 99.6 2.5E-14 5.5E-19 137.0 14.8 148 84-282 2-164 (247)
219 cd01881 Obg_like The Obg-like 99.6 8.2E-15 1.8E-19 132.6 10.6 148 87-281 1-169 (176)
220 cd04146 RERG_RasL11_like RERG/ 99.6 1.1E-14 2.3E-19 130.8 11.1 149 84-281 1-156 (165)
221 cd04125 RabA_like RabA-like su 99.6 1.6E-14 3.4E-19 132.9 12.4 152 83-282 1-155 (188)
222 cd00876 Ras Ras family. The R 99.6 1.1E-14 2.3E-19 129.4 10.9 147 84-281 1-153 (160)
223 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.7E-14 3.8E-19 148.8 14.0 145 80-282 201-353 (442)
224 cd04111 Rab39 Rab39 subfamily. 99.6 9.7E-15 2.1E-19 136.8 10.6 150 83-282 3-159 (211)
225 cd04130 Wrch_1 Wrch-1 subfamil 99.6 8.9E-15 1.9E-19 132.6 9.6 159 83-282 1-167 (173)
226 PLN03108 Rab family protein; P 99.6 3E-14 6.4E-19 133.5 13.4 153 82-282 6-161 (210)
227 cd04117 Rab15 Rab15 subfamily. 99.6 2.4E-14 5.3E-19 128.2 12.2 148 84-281 2-154 (161)
228 cd04134 Rho3 Rho3 subfamily. 99.6 3.7E-14 8.1E-19 130.5 13.7 155 83-282 1-167 (189)
229 cd03695 CysN_NodQ_II CysN_NodQ 99.6 3.5E-14 7.5E-19 111.6 11.1 79 312-392 1-81 (81)
230 cd01875 RhoG RhoG subfamily. 99.6 7.8E-14 1.7E-18 128.7 15.0 156 82-282 3-170 (191)
231 COG0370 FeoB Fe2+ transport sy 99.6 3.3E-14 7.1E-19 148.2 13.7 145 83-281 4-156 (653)
232 TIGR00437 feoB ferrous iron tr 99.6 2.3E-14 4.9E-19 153.1 12.8 140 89-282 1-148 (591)
233 cd01870 RhoA_like RhoA-like su 99.5 4.1E-14 8.9E-19 128.2 12.0 158 83-282 2-168 (175)
234 cd04133 Rop_like Rop subfamily 99.5 4.1E-14 8.9E-19 128.6 11.7 155 83-282 2-166 (176)
235 smart00176 RAN Ran (Ras-relate 99.5 9.6E-14 2.1E-18 128.7 14.0 104 158-282 42-147 (200)
236 cd01876 YihA_EngB The YihA (En 99.5 1.3E-13 2.8E-18 123.2 14.1 149 85-281 2-163 (170)
237 KOG1423 Ras-like GTPase ERA [C 99.5 6.6E-14 1.4E-18 131.9 11.7 170 78-290 68-277 (379)
238 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 1.9E-13 4.1E-18 125.0 13.3 158 80-282 3-173 (182)
239 cd04148 RGK RGK subfamily. Th 99.5 1.9E-13 4.2E-18 129.0 12.5 150 84-282 2-156 (221)
240 COG2262 HflX GTPases [General 99.5 5.5E-14 1.2E-18 138.4 8.7 152 76-282 186-349 (411)
241 cd04105 SR_beta Signal recogni 99.5 3.4E-13 7.3E-18 125.6 13.4 132 83-252 1-141 (203)
242 cd01896 DRG The developmentall 99.5 3.7E-13 7.9E-18 127.9 13.6 82 84-196 2-90 (233)
243 cd04131 Rnd Rnd subfamily. Th 99.5 2.6E-13 5.7E-18 123.7 12.1 154 83-282 2-169 (178)
244 KOG0084 GTPase Rab1/YPT1, smal 99.5 3.4E-13 7.4E-18 119.7 12.1 155 80-281 7-164 (205)
245 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 7.1E-13 1.5E-17 125.4 14.7 158 81-282 12-181 (232)
246 PRK09866 hypothetical protein; 99.5 1.2E-12 2.6E-17 136.0 16.9 110 159-281 229-345 (741)
247 cd00882 Ras_like_GTPase Ras-li 99.5 1.7E-13 3.7E-18 119.2 9.1 143 87-280 1-151 (157)
248 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 9.4E-13 2E-17 116.5 13.1 156 80-282 20-178 (221)
249 KOG1532 GTPase XAB1, interacts 99.5 8.2E-14 1.8E-18 129.3 6.5 200 80-282 17-257 (366)
250 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 6.6E-13 1.4E-17 125.0 12.7 152 83-282 2-169 (222)
251 PF01926 MMR_HSR1: 50S ribosom 99.4 4.1E-13 8.9E-18 113.4 9.8 107 84-229 1-116 (116)
252 KOG0078 GTP-binding protein SE 99.4 4.2E-13 9.1E-18 120.9 10.3 157 80-281 10-166 (207)
253 KOG0394 Ras-related GTPase [Ge 99.4 2.5E-13 5.5E-18 118.9 8.1 157 80-281 7-170 (210)
254 PF00071 Ras: Ras family; Int 99.4 7E-13 1.5E-17 118.4 10.8 150 84-281 1-153 (162)
255 cd04129 Rho2 Rho2 subfamily. 99.4 4.8E-13 1E-17 122.9 9.9 156 83-282 2-166 (187)
256 KOG0073 GTP-binding ADP-ribosy 99.4 2.9E-12 6.3E-17 110.2 13.2 151 80-279 14-168 (185)
257 PTZ00132 GTP-binding nuclear p 99.4 5.4E-12 1.2E-16 118.6 15.5 152 80-281 7-160 (215)
258 cd04104 p47_IIGP_like p47 (47- 99.4 3.4E-12 7.4E-17 118.3 13.4 157 83-280 2-175 (197)
259 cd04103 Centaurin_gamma Centau 99.4 3.5E-12 7.6E-17 113.9 12.7 145 83-281 1-151 (158)
260 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 2.8E-12 6.2E-17 118.7 12.5 138 83-257 1-153 (196)
261 KOG1191 Mitochondrial GTPase [ 99.4 8.7E-13 1.9E-17 132.0 8.7 158 80-283 266-444 (531)
262 KOG0098 GTPase Rab2, small G p 99.4 9.5E-13 2.1E-17 115.5 7.3 153 82-282 6-161 (216)
263 KOG1489 Predicted GTP-binding 99.3 7E-12 1.5E-16 119.1 11.6 158 75-281 189-359 (366)
264 PF09439 SRPRB: Signal recogni 99.3 4.3E-12 9.2E-17 114.3 9.3 114 82-236 3-128 (181)
265 COG1163 DRG Predicted GTPase [ 99.3 1.2E-11 2.5E-16 118.1 11.7 87 80-197 61-154 (365)
266 cd01873 RhoBTB RhoBTB subfamil 99.3 1.9E-11 4.1E-16 113.0 12.8 108 159-281 65-188 (195)
267 COG3596 Predicted GTPase [Gene 99.3 2.1E-11 4.5E-16 114.3 12.1 160 76-280 33-213 (296)
268 KOG0080 GTPase Rab18, small G 99.3 6.3E-12 1.4E-16 107.5 7.1 153 80-280 9-165 (209)
269 COG1084 Predicted GTPase [Gene 99.3 1.9E-11 4.2E-16 117.1 11.1 152 81-280 167-327 (346)
270 cd04102 RabL3 RabL3 (Rab-like3 99.3 7.9E-11 1.7E-15 109.3 14.7 114 84-233 2-142 (202)
271 KOG0087 GTPase Rab11/YPT3, sma 99.3 2.5E-11 5.4E-16 109.1 10.7 150 82-282 14-169 (222)
272 PLN00023 GTP-binding protein; 99.3 6.4E-11 1.4E-15 115.7 13.5 145 79-259 18-190 (334)
273 KOG0093 GTPase Rab3, small G p 99.3 8.5E-12 1.9E-16 105.1 6.4 156 83-283 22-177 (193)
274 KOG0086 GTPase Rab4, small G p 99.3 1.7E-11 3.6E-16 103.9 8.0 152 82-280 9-162 (214)
275 PF08477 Miro: Miro-like prote 99.3 9.2E-12 2E-16 105.3 6.4 114 84-231 1-119 (119)
276 KOG0070 GTP-binding ADP-ribosy 99.2 3.5E-11 7.5E-16 106.3 9.7 153 78-280 13-169 (181)
277 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 1E-10 2.2E-15 110.1 13.2 153 84-273 1-161 (232)
278 KOG0095 GTPase Rab30, small G 99.2 3.5E-11 7.6E-16 101.6 8.9 152 81-281 6-161 (213)
279 KOG0076 GTP-binding ADP-ribosy 99.2 1.4E-11 3.1E-16 107.0 6.7 162 80-279 15-177 (197)
280 COG1100 GTPase SAR1 and relate 99.2 1.6E-10 3.5E-15 108.6 14.3 163 83-282 6-178 (219)
281 cd01850 CDC_Septin CDC/Septin. 99.2 1.7E-10 3.6E-15 112.4 14.3 143 82-258 4-177 (276)
282 KOG0090 Signal recognition par 99.2 1.5E-10 3.3E-15 104.2 12.2 156 81-279 37-229 (238)
283 cd03704 eRF3c_III This family 99.2 5.5E-11 1.2E-15 99.0 8.5 73 399-472 2-74 (108)
284 KOG0075 GTP-binding ADP-ribosy 99.2 6.3E-11 1.4E-15 100.0 8.2 147 83-280 21-173 (186)
285 PF03143 GTP_EFTU_D3: Elongati 99.2 9.7E-11 2.1E-15 95.8 8.2 70 396-473 1-71 (99)
286 cd03688 eIF2_gamma_II eIF2_gam 99.2 3.4E-10 7.3E-15 91.9 11.2 86 308-393 2-112 (113)
287 COG0536 Obg Predicted GTPase [ 99.2 1E-10 2.3E-15 112.6 9.3 176 58-283 135-327 (369)
288 PF03029 ATP_bind_1: Conserved 99.2 1.1E-11 2.4E-16 117.8 2.7 113 161-281 92-229 (238)
289 cd03692 mtIF2_IVc mtIF2_IVc: t 99.1 5.4E-10 1.2E-14 88.4 11.2 76 314-391 3-83 (84)
290 PTZ00099 rab6; Provisional 99.1 2.1E-10 4.4E-15 104.3 9.2 106 158-282 27-135 (176)
291 KOG0079 GTP-binding protein H- 99.1 1.3E-10 2.9E-15 98.1 7.0 150 84-281 10-161 (198)
292 PRK09435 membrane ATPase/prote 99.1 2.3E-10 4.9E-15 113.3 9.2 106 158-282 147-253 (332)
293 COG5192 BMS1 GTP-binding prote 99.1 3.3E-09 7.2E-14 107.3 17.1 143 81-273 68-210 (1077)
294 cd04093 HBS1_C HBS1_C: this fa 99.1 4.2E-10 9E-15 93.6 8.9 72 399-473 2-74 (107)
295 cd01853 Toc34_like Toc34-like 99.1 3.4E-09 7.3E-14 101.4 16.2 122 79-236 28-165 (249)
296 cd03705 EF1_alpha_III Domain I 99.1 3.8E-10 8.3E-15 93.3 7.8 72 399-473 2-74 (104)
297 KOG0088 GTPase Rab21, small G 99.1 2.9E-10 6.2E-15 97.1 6.9 154 81-282 12-168 (218)
298 PRK13768 GTPase; Provisional 99.1 7.5E-10 1.6E-14 106.5 10.6 110 159-281 96-239 (253)
299 COG4917 EutP Ethanolamine util 99.0 5E-10 1.1E-14 92.2 7.3 132 83-280 2-137 (148)
300 KOG0097 GTPase Rab14, small G 99.0 2E-09 4.3E-14 90.2 10.6 154 80-280 9-164 (215)
301 cd01899 Ygr210 Ygr210 subfamil 99.0 2.6E-09 5.7E-14 105.7 12.7 36 160-195 69-111 (318)
302 cd04095 CysN_NoDQ_III TCysN_No 99.0 2.5E-09 5.4E-14 88.2 9.2 70 399-473 2-71 (103)
303 TIGR00073 hypB hydrogenase acc 99.0 1.3E-09 2.8E-14 101.9 8.0 98 159-281 102-199 (207)
304 KOG0395 Ras-related GTPase [Ge 99.0 2.2E-09 4.7E-14 99.0 9.1 152 82-282 3-158 (196)
305 TIGR00750 lao LAO/AO transport 99.0 7.3E-09 1.6E-13 102.3 13.5 102 158-282 125-231 (300)
306 KOG0071 GTP-binding ADP-ribosy 99.0 4.8E-09 1E-13 88.0 10.1 149 81-279 16-168 (180)
307 KOG0072 GTP-binding ADP-ribosy 98.9 2.9E-09 6.2E-14 89.8 7.0 151 81-280 17-170 (182)
308 PF05049 IIGP: Interferon-indu 98.9 7.6E-09 1.6E-13 103.3 10.2 149 79-273 32-200 (376)
309 PF03144 GTP_EFTU_D2: Elongati 98.9 9.3E-09 2E-13 79.3 8.6 68 324-391 1-74 (74)
310 KOG0081 GTPase Rab27, small G 98.9 4.2E-09 9E-14 90.2 7.1 105 160-282 67-174 (219)
311 KOG0077 Vesicle coat complex C 98.9 1.3E-08 2.8E-13 88.0 9.6 157 80-279 18-183 (193)
312 KOG0091 GTPase Rab39, small G 98.8 4.7E-09 1E-13 90.3 5.9 152 82-282 8-166 (213)
313 TIGR02836 spore_IV_A stage IV 98.8 5.2E-08 1.1E-12 97.1 14.0 133 80-232 15-192 (492)
314 PRK09602 translation-associate 98.8 3.5E-08 7.6E-13 100.6 12.8 35 160-194 72-113 (396)
315 PF00350 Dynamin_N: Dynamin fa 98.8 1.1E-08 2.5E-13 91.9 7.9 66 158-230 99-168 (168)
316 PRK10463 hydrogenase nickel in 98.8 1E-08 2.2E-13 99.1 8.0 173 70-280 92-280 (290)
317 smart00053 DYNc Dynamin, GTPas 98.8 1.6E-08 3.4E-13 95.9 8.9 67 160-234 125-206 (240)
318 cd01342 Translation_Factor_II_ 98.8 4.8E-08 1E-12 76.0 10.3 78 312-391 1-82 (83)
319 PF04548 AIG1: AIG1 family; I 98.8 6.5E-08 1.4E-12 90.7 13.0 147 83-272 1-163 (212)
320 KOG0074 GTP-binding ADP-ribosy 98.8 2.5E-08 5.5E-13 83.8 8.8 151 80-280 15-170 (185)
321 TIGR00101 ureG urease accessor 98.8 2.8E-08 6E-13 92.1 9.8 96 159-281 91-188 (199)
322 TIGR00991 3a0901s02IAP34 GTP-b 98.8 8.8E-08 1.9E-12 93.3 13.2 118 80-233 36-166 (313)
323 KOG0410 Predicted GTP binding 98.8 1.8E-08 3.9E-13 96.3 8.1 146 77-281 173-333 (410)
324 PF03308 ArgK: ArgK protein; 98.7 3E-08 6.4E-13 93.3 7.9 103 158-282 120-223 (266)
325 cd01513 Translation_factor_III 98.7 5.7E-08 1.2E-12 79.8 8.6 70 399-473 2-72 (102)
326 KOG3886 GTP-binding protein [S 98.7 4E-08 8.6E-13 89.7 7.5 152 83-273 5-163 (295)
327 COG1703 ArgK Putative periplas 98.6 1.6E-07 3.4E-12 89.6 10.1 103 158-282 142-247 (323)
328 KOG0083 GTPase Rab26/Rab37, sm 98.6 6.6E-09 1.4E-13 86.3 0.8 103 158-280 45-151 (192)
329 COG0378 HypB Ni2+-binding GTPa 98.6 2.9E-07 6.4E-12 82.7 10.0 94 160-280 97-192 (202)
330 PF00735 Septin: Septin; Inte 98.6 6.2E-07 1.3E-11 87.4 12.7 144 82-259 4-177 (281)
331 PF14578 GTP_EFTU_D4: Elongati 98.6 6.4E-07 1.4E-11 69.1 10.1 74 311-390 4-79 (81)
332 KOG2486 Predicted GTPase [Gene 98.6 2E-07 4.3E-12 87.7 8.5 160 80-281 134-308 (320)
333 KOG4252 GTP-binding protein [S 98.6 8.1E-09 1.8E-13 90.2 -1.1 154 80-281 18-173 (246)
334 cd04092 mtEFG2_II_like mtEFG2_ 98.6 6E-07 1.3E-11 70.9 9.7 76 313-392 2-83 (83)
335 cd03690 Tet_II Tet_II: This su 98.5 5.3E-07 1.2E-11 71.5 9.1 77 310-391 2-84 (85)
336 cd04088 EFG_mtEFG_II EFG_mtEFG 98.5 8.5E-07 1.9E-11 70.0 9.8 75 314-392 3-83 (83)
337 cd03699 lepA_II lepA_II: This 98.5 1.8E-06 3.9E-11 68.6 10.9 80 312-392 1-86 (86)
338 TIGR00993 3a0901s04IAP86 chlor 98.5 2E-06 4.2E-11 90.7 13.4 118 81-234 117-250 (763)
339 cd01900 YchF YchF subfamily. 98.5 3.4E-07 7.3E-12 88.6 7.2 80 85-195 1-104 (274)
340 cd03691 BipA_TypA_II BipA_TypA 98.5 1.8E-06 4E-11 68.6 10.2 76 312-391 1-85 (86)
341 PTZ00258 GTP-binding protein; 98.4 4.5E-07 9.8E-12 91.6 8.0 83 81-194 20-126 (390)
342 KOG1673 Ras GTPases [General f 98.4 1.6E-06 3.5E-11 74.3 9.7 159 79-281 17-178 (205)
343 KOG1490 GTP-binding protein CR 98.4 8E-07 1.7E-11 89.7 8.9 152 80-279 166-331 (620)
344 KOG1486 GTP-binding protein DR 98.4 1.8E-06 3.9E-11 79.9 10.5 88 79-197 59-153 (364)
345 COG5019 CDC3 Septin family pro 98.4 3.1E-06 6.7E-11 83.0 12.6 150 74-258 15-196 (373)
346 cd03708 GTPBP_III Domain III o 98.4 9.2E-07 2E-11 70.4 7.4 41 399-442 2-43 (87)
347 cd04091 mtEFG1_II_like mtEFG1_ 98.4 2.8E-06 6E-11 66.7 9.8 73 314-391 3-80 (81)
348 PRK09601 GTP-binding protein Y 98.4 7.8E-07 1.7E-11 89.0 8.1 82 83-195 3-108 (364)
349 KOG1707 Predicted Ras related/ 98.4 8.5E-07 1.8E-11 91.2 7.4 156 80-281 7-167 (625)
350 cd03689 RF3_II RF3_II: this su 98.4 3.7E-06 8.1E-11 66.6 9.5 67 322-392 14-84 (85)
351 KOG1547 Septin CDC10 and relat 98.3 6E-06 1.3E-10 76.1 11.8 145 81-259 45-219 (336)
352 KOG0393 Ras-related small GTPa 98.3 1.5E-06 3.4E-11 78.9 7.9 159 81-282 3-172 (198)
353 PRK10416 signal recognition pa 98.3 7.2E-06 1.6E-10 81.4 13.0 94 158-280 195-301 (318)
354 KOG3883 Ras family small GTPas 98.3 1.3E-05 2.8E-10 68.7 12.5 148 81-279 8-165 (198)
355 PRK14974 cell division protein 98.3 6.3E-06 1.4E-10 82.1 11.3 94 158-280 221-321 (336)
356 cd03707 EFTU_III Domain III of 98.2 4.8E-06 1E-10 66.8 7.9 60 400-472 3-65 (90)
357 cd01859 MJ1464 MJ1464. This f 98.2 4.7E-06 1E-10 74.0 8.2 80 180-281 9-88 (156)
358 KOG0096 GTPase Ran/TC4/GSP1 (n 98.2 8.1E-06 1.8E-10 72.6 9.1 148 80-280 8-160 (216)
359 TIGR00064 ftsY signal recognit 98.2 1.9E-05 4.2E-10 76.7 12.4 94 158-280 153-259 (272)
360 cd01851 GBP Guanylate-binding 98.2 1.4E-05 3E-10 75.5 11.0 92 79-195 4-103 (224)
361 TIGR01425 SRP54_euk signal rec 98.2 1.1E-05 2.3E-10 82.6 10.7 64 158-232 181-251 (429)
362 cd03706 mtEFTU_III Domain III 98.2 9.1E-06 2E-10 65.6 7.9 60 400-472 3-65 (93)
363 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1.1E-05 2.3E-10 70.5 8.9 80 175-276 3-84 (141)
364 cd01858 NGP_1 NGP-1. Autoanti 98.1 6.3E-06 1.4E-10 73.3 7.6 85 177-282 2-88 (157)
365 KOG1487 GTP-binding protein DR 98.1 4.4E-06 9.6E-11 77.8 6.6 84 83-197 60-150 (358)
366 KOG0448 Mitofusin 1 GTPase, in 98.1 2.8E-05 6E-10 81.6 12.9 100 161-272 207-309 (749)
367 cd01855 YqeH YqeH. YqeH is an 98.1 8E-06 1.7E-10 75.1 8.0 94 173-281 24-117 (190)
368 cd01858 NGP_1 NGP-1. Autoanti 98.1 3.4E-06 7.4E-11 75.0 5.1 24 81-104 101-124 (157)
369 PF00448 SRP54: SRP54-type pro 98.1 8.9E-06 1.9E-10 75.1 7.9 66 158-233 82-153 (196)
370 cd01856 YlqF YlqF. Proteins o 98.1 9.9E-06 2.1E-10 73.2 7.1 92 167-282 2-94 (171)
371 KOG2655 Septin family protein 98.0 3.3E-05 7.1E-10 76.5 10.8 147 77-258 16-192 (366)
372 cd03700 eEF2_snRNP_like_II EF2 98.0 4.5E-05 9.7E-10 61.5 9.2 66 322-391 14-92 (93)
373 TIGR00157 ribosome small subun 98.0 1.3E-05 2.8E-10 76.8 7.0 84 180-282 33-116 (245)
374 cd04178 Nucleostemin_like Nucl 98.0 7.4E-06 1.6E-10 74.0 5.0 57 81-170 116-172 (172)
375 PRK14722 flhF flagellar biosyn 98.0 2.2E-05 4.8E-10 79.1 8.7 66 157-232 213-293 (374)
376 KOG3905 Dynein light intermedi 98.0 8.2E-05 1.8E-09 71.6 11.4 57 217-280 220-281 (473)
377 cd03115 SRP The signal recogni 98.0 5.9E-05 1.3E-09 68.2 10.2 65 158-232 81-151 (173)
378 PRK11889 flhF flagellar biosyn 97.9 1.8E-05 3.9E-10 79.4 6.5 64 159-232 320-389 (436)
379 cd03114 ArgK-like The function 97.9 4.6E-05 9.9E-10 67.1 8.4 59 158-231 90-148 (148)
380 TIGR03596 GTPase_YlqF ribosome 97.9 2.6E-05 5.5E-10 76.2 7.4 90 168-281 5-95 (276)
381 PRK12289 GTPase RsgA; Reviewed 97.9 3.2E-05 6.9E-10 77.7 8.1 82 181-282 87-168 (352)
382 cd01849 YlqF_related_GTPase Yl 97.9 2.9E-05 6.3E-10 68.9 6.9 77 185-282 1-78 (155)
383 PF03193 DUF258: Protein of un 97.9 7.3E-06 1.6E-10 72.6 2.8 23 83-105 36-58 (161)
384 cd01849 YlqF_related_GTPase Yl 97.9 1.3E-05 2.9E-10 71.0 4.6 24 81-104 99-122 (155)
385 PRK00098 GTPase RsgA; Reviewed 97.9 3.5E-05 7.7E-10 76.0 7.6 82 181-281 78-159 (298)
386 KOG1954 Endocytosis/signaling 97.8 0.00014 3E-09 71.2 10.5 131 83-232 59-223 (532)
387 PF05783 DLIC: Dynein light in 97.8 0.00014 3E-09 75.6 10.1 55 219-280 196-255 (472)
388 cd04090 eEF2_II_snRNP Loc2 eEF 97.7 0.00025 5.5E-09 57.2 9.5 66 314-381 3-84 (94)
389 cd01855 YqeH YqeH. YqeH is an 97.7 2.9E-05 6.4E-10 71.3 4.5 63 83-170 128-190 (190)
390 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 3E-05 6.6E-10 67.6 4.2 21 84-104 85-105 (141)
391 KOG3887 Predicted small GTPase 97.7 6.1E-05 1.3E-09 69.6 6.1 155 83-274 28-188 (347)
392 PRK12288 GTPase RsgA; Reviewed 97.7 3.3E-05 7.1E-10 77.6 4.8 22 84-105 207-228 (347)
393 cd03112 CobW_like The function 97.7 5.3E-05 1.2E-09 67.5 5.3 22 84-105 2-23 (158)
394 PRK14721 flhF flagellar biosyn 97.7 0.0002 4.2E-09 73.4 9.9 66 157-232 267-338 (420)
395 PRK09563 rbgA GTPase YlqF; Rev 97.7 8.2E-05 1.8E-09 73.0 6.9 92 167-282 7-99 (287)
396 COG1419 FlhF Flagellar GTP-bin 97.7 0.00023 4.9E-09 71.5 9.9 131 81-233 202-351 (407)
397 PRK00771 signal recognition pa 97.7 0.00021 4.6E-09 73.8 9.9 63 159-232 175-244 (437)
398 PRK12724 flagellar biosynthesi 97.7 0.00028 6.1E-09 71.8 10.4 65 158-232 298-371 (432)
399 KOG1534 Putative transcription 97.7 6.1E-05 1.3E-09 68.3 5.0 71 160-233 98-177 (273)
400 cd01856 YlqF YlqF. Proteins o 97.6 6.6E-05 1.4E-09 67.8 5.2 24 81-104 114-137 (171)
401 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.00013 2.8E-09 71.6 7.6 80 181-280 76-155 (287)
402 TIGR00157 ribosome small subun 97.6 6E-05 1.3E-09 72.2 4.8 23 83-105 121-143 (245)
403 TIGR00487 IF-2 translation ini 97.6 0.00073 1.6E-08 72.6 13.4 181 163-392 390-576 (587)
404 CHL00189 infB translation init 97.6 0.0012 2.6E-08 72.4 14.8 181 163-392 547-732 (742)
405 COG1161 Predicted GTPases [Gen 97.6 6.2E-05 1.3E-09 75.0 4.6 58 80-170 130-187 (322)
406 PRK09563 rbgA GTPase YlqF; Rev 97.6 8.9E-05 1.9E-09 72.8 5.6 58 81-171 120-177 (287)
407 COG1162 Predicted GTPases [Gen 97.6 8.9E-05 1.9E-09 71.8 5.4 21 84-104 166-186 (301)
408 TIGR03596 GTPase_YlqF ribosome 97.6 8E-05 1.7E-09 72.7 5.1 23 81-103 117-139 (276)
409 PRK12727 flagellar biosynthesi 97.6 0.00026 5.7E-09 73.9 9.0 64 158-232 427-496 (559)
410 PRK12726 flagellar biosynthesi 97.6 0.00018 4E-09 72.1 7.6 64 159-232 285-354 (407)
411 PRK12723 flagellar biosynthesi 97.6 0.00042 9.1E-09 70.5 10.3 65 158-232 253-324 (388)
412 TIGR00959 ffh signal recogniti 97.6 0.00019 4E-09 74.0 7.8 64 158-232 181-251 (428)
413 PRK05306 infB translation init 97.6 0.0015 3.2E-08 72.2 15.2 179 165-392 594-778 (787)
414 COG3640 CooC CO dehydrogenase 97.6 0.00032 6.9E-09 65.1 8.3 64 159-232 133-197 (255)
415 PRK10867 signal recognition pa 97.5 0.00045 9.8E-09 71.2 10.2 64 158-232 182-252 (433)
416 cd04094 selB_III This family r 97.5 0.0006 1.3E-08 55.4 8.9 80 387-469 1-85 (97)
417 PRK05703 flhF flagellar biosyn 97.5 0.00044 9.6E-09 71.5 10.1 65 158-232 298-369 (424)
418 cd03703 aeIF5B_II aeIF5B_II: T 97.5 0.00072 1.6E-08 55.6 9.2 77 313-391 2-93 (110)
419 TIGR03597 GTPase_YqeH ribosome 97.5 0.00018 3.9E-09 72.9 6.8 96 171-282 51-146 (360)
420 PRK12288 GTPase RsgA; Reviewed 97.5 0.0004 8.7E-09 69.8 9.2 83 181-281 118-200 (347)
421 PRK12289 GTPase RsgA; Reviewed 97.5 9.6E-05 2.1E-09 74.3 4.7 22 84-105 174-195 (352)
422 PRK01889 GTPase RsgA; Reviewed 97.5 0.00028 6.1E-09 71.3 8.0 79 181-280 110-188 (356)
423 PRK06731 flhF flagellar biosyn 97.5 0.00027 5.8E-09 68.4 6.9 64 159-232 154-223 (270)
424 TIGR00092 GTP-binding protein 97.4 0.00035 7.5E-09 70.2 7.4 36 160-195 67-109 (368)
425 COG0012 Predicted GTPase, prob 97.4 0.00033 7.2E-09 69.4 6.9 35 161-195 68-109 (372)
426 KOG4423 GTP-binding protein-li 97.4 2.4E-05 5.1E-10 69.4 -1.1 153 84-281 27-186 (229)
427 PRK06995 flhF flagellar biosyn 97.4 0.00019 4.1E-09 74.7 4.9 66 157-232 332-403 (484)
428 cd03111 CpaE_like This protein 97.4 0.0011 2.5E-08 54.7 8.6 60 161-229 44-106 (106)
429 TIGR03597 GTPase_YqeH ribosome 97.4 0.00025 5.4E-09 71.9 5.6 91 83-201 155-255 (360)
430 cd03702 IF2_mtIF2_II This fami 97.4 0.0019 4.1E-08 52.1 9.4 74 314-392 3-79 (95)
431 cd02036 MinD Bacterial cell di 97.3 0.0017 3.8E-08 58.5 10.2 63 161-232 64-126 (179)
432 KOG4181 Uncharacterized conser 97.3 0.0017 3.8E-08 63.2 10.0 141 81-254 187-374 (491)
433 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00032 6.9E-09 68.9 5.3 23 83-105 162-184 (287)
434 cd02037 MRP-like MRP (Multiple 97.3 0.00076 1.6E-08 60.6 7.2 66 158-232 66-133 (169)
435 cd02038 FleN-like FleN is a me 97.3 0.0018 3.8E-08 56.3 9.2 64 160-232 45-109 (139)
436 PRK14723 flhF flagellar biosyn 97.3 0.00078 1.7E-08 73.5 8.2 65 158-232 262-335 (767)
437 COG0532 InfB Translation initi 97.3 0.0068 1.5E-07 62.7 14.6 70 321-392 425-497 (509)
438 cd01859 MJ1464 MJ1464. This f 97.3 0.00035 7.5E-09 61.9 4.7 23 81-103 100-122 (156)
439 PRK13796 GTPase YqeH; Provisio 97.3 0.0013 2.8E-08 66.9 9.3 92 175-282 60-152 (365)
440 PRK13796 GTPase YqeH; Provisio 97.3 0.00031 6.7E-09 71.3 4.8 23 83-105 161-183 (365)
441 KOG0780 Signal recognition par 97.2 0.00098 2.1E-08 65.9 7.8 66 155-232 179-252 (483)
442 COG0541 Ffh Signal recognition 97.2 0.0014 3E-08 66.2 9.0 135 79-232 97-251 (451)
443 smart00275 G_alpha G protein a 97.2 0.0013 2.8E-08 66.2 8.4 135 144-281 168-326 (342)
444 COG1162 Predicted GTPases [Gen 97.2 0.0017 3.7E-08 63.0 8.7 82 182-281 78-159 (301)
445 cd00066 G-alpha G protein alph 97.2 0.00098 2.1E-08 66.4 7.3 133 145-280 146-302 (317)
446 PRK11537 putative GTP-binding 97.2 0.0038 8.2E-08 62.1 11.4 25 81-105 3-27 (318)
447 PF02492 cobW: CobW/HypB/UreG, 97.2 0.00043 9.4E-09 62.9 4.4 21 84-104 2-22 (178)
448 PRK00098 GTPase RsgA; Reviewed 97.1 0.00053 1.2E-08 67.7 4.8 22 83-104 165-186 (298)
449 TIGR00491 aIF-2 translation in 97.0 0.01 2.2E-07 63.9 14.0 76 318-393 473-550 (590)
450 KOG2485 Conserved ATP/GTP bind 97.0 0.00086 1.9E-08 64.7 5.1 67 79-170 140-206 (335)
451 KOG0447 Dynamin-like GTP bindi 97.0 0.0028 6.2E-08 65.0 9.0 85 144-234 393-493 (980)
452 cd03701 IF2_IF5B_II IF2_IF5B_I 97.0 0.0041 8.9E-08 50.2 8.3 73 314-391 3-78 (95)
453 KOG1491 Predicted GTP-binding 97.0 0.0014 3.1E-08 63.8 6.3 84 81-195 19-126 (391)
454 cd03110 Fer4_NifH_child This p 96.9 0.0038 8.3E-08 56.5 8.5 65 158-232 91-155 (179)
455 PRK08099 bifunctional DNA-bind 96.9 0.004 8.7E-08 63.9 9.5 31 79-109 216-246 (399)
456 COG0523 Putative GTPases (G3E 96.9 0.0031 6.7E-08 62.6 7.9 25 83-107 2-26 (323)
457 PF09547 Spore_IV_A: Stage IV 96.9 0.02 4.2E-07 58.0 13.1 27 80-106 15-41 (492)
458 KOG1533 Predicted GTPase [Gene 96.9 0.0036 7.8E-08 58.0 7.4 72 158-232 95-175 (290)
459 COG0552 FtsY Signal recognitio 96.8 0.014 3.1E-07 57.2 11.5 129 80-232 137-296 (340)
460 cd01983 Fer4_NifH The Fer4_Nif 96.8 0.012 2.5E-07 46.8 9.1 70 85-197 2-72 (99)
461 TIGR02475 CobW cobalamin biosy 96.7 0.01 2.2E-07 59.7 10.4 25 81-105 3-27 (341)
462 cd02042 ParA ParA and ParB of 96.7 0.007 1.5E-07 49.4 7.5 35 160-196 40-74 (104)
463 PF06858 NOG1: Nucleolar GTP-b 96.5 0.0064 1.4E-07 43.7 5.2 50 177-231 6-58 (58)
464 PRK13695 putative NTPase; Prov 96.4 0.0096 2.1E-07 53.7 7.1 21 84-104 2-22 (174)
465 KOG3859 Septins (P-loop GTPase 96.4 0.011 2.5E-07 56.0 7.5 143 74-259 34-211 (406)
466 KOG1424 Predicted GTP-binding 96.2 0.0035 7.5E-08 64.3 3.4 23 82-104 314-336 (562)
467 KOG1707 Predicted Ras related/ 96.2 0.016 3.4E-07 60.5 8.1 145 79-273 422-568 (625)
468 CHL00175 minD septum-site dete 96.2 0.027 5.9E-07 55.0 9.3 65 159-232 126-190 (281)
469 cd04178 Nucleostemin_like Nucl 96.0 0.013 2.7E-07 53.0 5.4 41 185-233 1-43 (172)
470 PRK10751 molybdopterin-guanine 95.9 0.02 4.3E-07 51.6 6.4 25 81-105 5-29 (173)
471 TIGR03348 VI_IcmF type VI secr 95.9 0.013 2.9E-07 68.3 6.6 19 83-101 112-130 (1169)
472 KOG2743 Cobalamin synthesis pr 95.9 0.027 5.8E-07 54.2 7.3 29 77-105 52-80 (391)
473 PF13555 AAA_29: P-loop contai 95.8 0.0081 1.8E-07 44.2 2.8 22 84-105 25-46 (62)
474 KOG2423 Nucleolar GTPase [Gene 95.8 0.0032 7E-08 62.4 0.8 26 78-103 303-328 (572)
475 PRK14845 translation initiatio 95.8 0.18 3.9E-06 57.6 14.6 76 318-393 931-1008(1049)
476 KOG2484 GTPase [General functi 95.7 0.0081 1.8E-07 59.9 3.4 26 79-104 249-274 (435)
477 PF13207 AAA_17: AAA domain; P 95.7 0.01 2.2E-07 49.8 3.3 24 84-107 1-24 (121)
478 COG1618 Predicted nucleotide k 95.6 0.073 1.6E-06 46.9 8.4 24 81-104 4-27 (179)
479 KOG2484 GTPase [General functi 95.6 0.041 9E-07 55.0 7.8 67 162-234 124-191 (435)
480 KOG0082 G-protein alpha subuni 95.6 0.11 2.3E-06 52.0 10.6 136 143-280 178-335 (354)
481 COG1763 MobB Molybdopterin-gua 95.4 0.027 5.8E-07 50.0 5.1 23 83-105 3-25 (161)
482 PF00503 G-alpha: G-protein al 95.4 0.049 1.1E-06 55.9 7.7 86 144-232 219-315 (389)
483 PRK04004 translation initiatio 95.4 0.26 5.7E-06 53.3 13.5 75 318-392 475-551 (586)
484 PRK13833 conjugal transfer pro 95.3 0.045 9.8E-07 54.4 6.9 24 82-105 144-167 (323)
485 PF00437 T2SE: Type II/IV secr 95.3 0.023 5E-07 55.2 4.8 23 82-104 127-149 (270)
486 KOG1144 Translation initiation 95.3 0.26 5.6E-06 53.1 12.5 60 319-378 945-1007(1064)
487 PRK01889 GTPase RsgA; Reviewed 95.2 0.016 3.5E-07 58.7 3.6 23 83-105 196-218 (356)
488 COG1136 SalX ABC-type antimicr 95.2 0.012 2.7E-07 55.0 2.4 19 84-102 33-51 (226)
489 PHA00729 NTP-binding motif con 95.1 0.017 3.7E-07 54.2 3.2 27 80-106 15-41 (226)
490 KOG0459 Polypeptide release fa 95.1 0.024 5.1E-07 56.7 4.1 198 80-278 81-278 (501)
491 TIGR02782 TrbB_P P-type conjug 94.9 0.058 1.3E-06 53.2 6.5 25 81-105 131-155 (299)
492 COG3523 IcmF Type VI protein s 94.9 0.043 9.4E-07 62.8 6.2 47 181-233 212-269 (1188)
493 PF03205 MobB: Molybdopterin g 94.9 0.023 5E-07 49.4 3.2 23 83-105 1-23 (140)
494 PRK07261 topology modulation p 94.9 0.021 4.5E-07 51.5 3.1 22 84-105 2-23 (171)
495 COG1126 GlnQ ABC-type polar am 94.9 0.018 3.9E-07 53.1 2.6 20 83-102 29-48 (240)
496 cd02019 NK Nucleoside/nucleoti 94.9 0.02 4.2E-07 43.2 2.4 20 84-103 1-20 (69)
497 cd03238 ABC_UvrA The excision 94.8 0.019 4.2E-07 51.9 2.7 24 81-104 20-43 (176)
498 PRK08118 topology modulation p 94.8 0.023 5E-07 51.0 3.1 25 83-107 2-26 (167)
499 PF13671 AAA_33: AAA domain; P 94.8 0.022 4.7E-07 49.2 2.8 23 85-107 2-24 (143)
500 COG1116 TauB ABC-type nitrate/ 94.8 0.018 3.9E-07 54.3 2.4 20 84-103 31-50 (248)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-87 Score=649.40 Aligned_cols=387 Identities=45% Similarity=0.792 Sum_probs=374.2
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
..++++|++++||+|||||||+++|+|++|.++.+.++++++++.+.|+.||.++|+||++++||+||+|++.+...|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
+.+.|+|+|||||++|+++|+.|+++||+|||||||..|.||+||+.++||+||+.+++.+|+.++||++||||. .+|
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~--v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL--VSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 679
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEE
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 317 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~ 317 (475)
++++|+++++++..+++.+||+++ +++|||+||++|+|+.+.. ..+|||+||||+++|+.+..|.+..++|||++|.
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg~~G~Nl~~~s--~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~ 237 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPK-DVPFIPISGFKGDNLTKKS--ENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQ 237 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc-CCeEEecccccCCcccccC--cCCcCccCChHHHHHhccCCCCCCCCCCeEeEee
Confidence 999999999999999999999854 7999999999999999876 4699999999999999999999999999999999
Q ss_pred EEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCCC
Q 011910 318 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 395 (475)
Q Consensus 318 ~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (475)
++| .+.|++..|||++|.|++||+|.+.|.+...+|+||+++++++..|.|||+|++++++++..+|++|+|+++.++
T Consensus 238 ~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 238 DVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred eEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 999 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 396 PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 396 ~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
|+..+..|.|++.+ +.+ +.|.+||+|++|+|+..++|+|.+|..++|++||+...++|.|++.|+.+++.|++.
T Consensus 318 ~~t~s~~f~a~i~v---l~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~ 392 (428)
T COG5256 318 PPTVSPEFTAQIIV---LWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPE 392 (428)
T ss_pred CcccccceEEEEEE---EecCccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEec
Confidence 99988999999999 455 889999999999999999999999999999999999999999999999999999875
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.2e-75 Score=602.56 Aligned_cols=388 Identities=37% Similarity=0.666 Sum_probs=365.4
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++++||+++||+|||||||+++|++.+|.++.+.+.++++++...|+.++.|+|++|..++|++||+|++.+...|++.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 57889999999999999999999999999999999988888888888899999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|+|||||.+|+++|+++++.+|++||||||..|.+++++...+||++|+.++..+|+|++|||+||||+...+|+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 99999999999999999999999999999999999999999888877899999999999999989999999999656899
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEE
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~ 318 (475)
+++|+++.++++.++++.||+. .+++|+|+||++|+|+.+.... ++||+|++|+++|+.++.|.+..+.|||++|.+
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~-~~~~~ipiSa~~G~ni~~~~~~--~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~ 240 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNP-DKIPFVPISGFEGDNMIERSTN--LDWYKGPTLLEALDQINEPKRPSDKPLRLPLQD 240 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeccccccccccccC--CcccchHHHHHHHhhcCCCccccCCCcEEEEEE
Confidence 9999999999999999999873 3579999999999999876543 899999999999999998888889999999999
Q ss_pred EE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCC-C
Q 011910 319 KF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA-K 395 (475)
Q Consensus 319 ~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~-~ 395 (475)
+| ++.|+|+.|+|.+|.|++||+|.++|++..++|++|++++.+++.|.|||+|+++|++++..++++||||+++. .
T Consensus 241 v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~~ 320 (447)
T PLN00043 241 VYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDD 320 (447)
T ss_pred EEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCCC
Confidence 99 47899999999999999999999999999999999999999999999999999999999889999999999974 6
Q ss_pred CcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 396 PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 396 ~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
|+..+++|+|+|.| +++ .+|..||++++|+|+.+++|+|.+|.+++|++||+..+++|.+|++|+.++|+|.|+
T Consensus 321 p~~~~~~F~A~i~~---l~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~ 395 (447)
T PLN00043 321 PAKEAANFTSQVII---MNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPT 395 (447)
T ss_pred CCccccEEEEEEEE---ECCCCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEEC
Confidence 77889999999999 445 789999999999999999999999999999999988888999999999999999986
No 3
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=7.1e-75 Score=597.30 Aligned_cols=389 Identities=39% Similarity=0.712 Sum_probs=366.8
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++++||+++||+|||||||+++|++.+|.++.+.++++++++...|++++.|+|++|..++|++||+|++.+...|.+.
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|+|||||.+|+.+++++++.+|++||||||..|+||++|...+||++|+.++..+|+|++|||+||||+..++|+
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~ 163 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYS 163 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhh
Confidence 99999999999999999999999999999999999999999999877899999999999999999999999997668899
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEE
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~ 318 (475)
+++|+++.+++..+|+..|++. .+++|||+||++|+|+.++.. .++||+|++|++.|+.++.|.+..+.||+++|++
T Consensus 164 ~~~~~~i~~~i~~~l~~~g~~~-~~~~~ipiSa~~g~ni~~~~~--~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~ 240 (446)
T PTZ00141 164 QERYDEIKKEVSAYLKKVGYNP-EKVPFIPISGWQGDNMIEKSD--NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQD 240 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-ccceEEEeecccCCCcccCCC--CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEE
Confidence 9999999999999999999863 368999999999999987654 4899999999999999988888888999999999
Q ss_pred EE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCC-C
Q 011910 319 KF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA-K 395 (475)
Q Consensus 319 ~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~-~ 395 (475)
+| ++.|++++|+|.+|.|++||+|.++|++..++|++|+.++.+++.|.||++|+++|++++..++++||||++++ .
T Consensus 241 v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~~ 320 (446)
T PTZ00141 241 VYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKND 320 (446)
T ss_pred EEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCCC
Confidence 99 57899999999999999999999999999999999999999999999999999999999889999999999985 5
Q ss_pred CcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 396 PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 396 ~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
|+..+++|+|+|.| +++ .+|+.||++++|+|+.+++|+|..|.+++|++||+..+++|++|++|+.++|+|.|+.
T Consensus 321 p~~~~~~f~a~i~~---l~~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~ 396 (446)
T PTZ00141 321 PAKECADFTAQVIV---LNHPGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTK 396 (446)
T ss_pred CCccceEEEEEEEE---ECCCCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECC
Confidence 66788999999999 445 6899999999999999999999999999999999888889999999999999999864
No 4
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-75 Score=560.62 Aligned_cols=393 Identities=61% Similarity=0.988 Sum_probs=381.5
Q ss_pred ccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEE
Q 011910 76 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 155 (475)
Q Consensus 76 ~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 155 (475)
...++.+.|+.++||+++||||+-+.+++.+|.++.++++++.+++++.+|.||+++|+||+..+||..|-|+..+..+|
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 34468889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCC
Q 011910 156 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 156 ~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~ 235 (475)
++..++++++|+|||..|+.+|+.++++||.++||++|..|.|++||+.++||++|..+++.+++.++|++|||||-+.+
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEE
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 315 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~ 315 (475)
+|+++||++++..+..+|+.+||++..+..++|+|+.+|.|+.+... ..||||.|++++..|+.++...|..++|++++
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~-s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~p 311 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD-SVCPWYKGPIFLEYLDELPHLERILNGPIRCP 311 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc-ccCCcccCCccceehhccCcccccCCCCEEee
Confidence 99999999999999999999999998999999999999999999887 78999999999999999999999999999999
Q ss_pred EEEEEccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCCC
Q 011910 316 IIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 395 (475)
Q Consensus 316 v~~~~~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (475)
|.+-|++.|||+.|+|.||.++.||.++++|.+..+.|.+|+.....++.+.||+.+-|.|+|+...+|..|.|||++++
T Consensus 312 I~~KykdmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n 391 (501)
T KOG0459|consen 312 VANKYKDMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNN 391 (501)
T ss_pred hhhhccccceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 396 PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 396 ~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
+.++.+.|.|+|.+ +.| +.|.+||.++||+|++...|.| +++..+|++||++.+++|.|++.|+.+++||+...
T Consensus 392 ~~~s~~~F~aqi~I---lE~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~ 466 (501)
T KOG0459|consen 392 PCKSGRTFDAQIVI---LEHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEG 466 (501)
T ss_pred ccccccEEEEEEEE---EecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCC
Confidence 99999999999999 556 7899999999999999999999 88899999999999999999999999999999765
No 5
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-72 Score=564.29 Aligned_cols=394 Identities=36% Similarity=0.677 Sum_probs=373.3
Q ss_pred ccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeee
Q 011910 74 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 153 (475)
Q Consensus 74 ~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~ 153 (475)
+.+..++.+++++++||+|+|||||+|+|||..|.+..+.|+++++++...|+.||.|+|++|.+.+||+||+|++++..
T Consensus 169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~ 248 (603)
T KOG0458|consen 169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT 248 (603)
T ss_pred ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCC
Q 011910 154 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 154 ~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~ 233 (475)
.|+...+.++|+|+|||.+|+.+|+.|+.+||++||||||+.|.||+||+..+||+||..+++.+|+.++||+|||||+
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~- 327 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDL- 327 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhhhhhHh-hhhcCcccCCeeEEEeecccccccccccc-cCCCCCCChhhHHHHhhhcCCCCCCCCCC
Q 011910 234 TVNWSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVD-KSLCPWWNGPCLFEALDRIEITPRDPNGP 311 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l-~~~~~~~~~~~~iipiSa~~g~gi~~l~~-~~~~~w~~g~~l~~~l~~l~~~~~~~~~~ 311 (475)
++|+++||++|++.+..+| +.+||. ..++.|||||+++|+|+....+ ..+..||+||||++.|+.+..|.+....|
T Consensus 328 -V~Wsq~RF~eIk~~l~~fL~~~~gf~-es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kP 405 (603)
T KOG0458|consen 328 -VSWSQDRFEEIKNKLSSFLKESCGFK-ESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKP 405 (603)
T ss_pred -cCccHHHHHHHHHHHHHHHHHhcCcc-cCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCC
Confidence 9999999999999999999 888997 4678999999999999988633 46788999999999999999888889999
Q ss_pred ceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeE
Q 011910 312 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (475)
Q Consensus 312 ~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (475)
|++.|.++++ +.|..++|+|++|.|++||+|+++|+...+.|++|.++..+...|.|||.|.+.|.++....++.|++
T Consensus 406 l~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i 485 (603)
T KOG0458|consen 406 LRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDI 485 (603)
T ss_pred eEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhccccee
Confidence 9999999996 56777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee-cCCCCcccccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEE
Q 011910 390 LS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 468 (475)
Q Consensus 390 l~-~~~~~~~~~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~ 468 (475)
++ .+..|.+.+..|.|++.||+. +.+|..|.+..+|+|+..++|++.++...+++.||...++.|++|..||.|+++
T Consensus 486 ~~~~~~~~i~~~~~f~~~~~~f~~--~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~ve 563 (603)
T KOG0458|consen 486 ADSGPQFPISKTTRFVARITTFDI--NLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVE 563 (603)
T ss_pred eecCCCccccceeEEEEEEEEeec--cccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeee
Confidence 99 777888888999999999774 478889999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 011910 469 IQVC 472 (475)
Q Consensus 469 ~~l~ 472 (475)
+++.
T Consensus 564 le~~ 567 (603)
T KOG0458|consen 564 LETE 567 (603)
T ss_pred cccc
Confidence 9874
No 6
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.2e-69 Score=560.33 Aligned_cols=379 Identities=39% Similarity=0.713 Sum_probs=354.6
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++++||+++||+|||||||+++|++..|.++.+.++++++++...|+.++.++|++|..++|+++|+|++.....+.+.
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCC--CccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK--GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~--g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
++.++|||||||.+|.+++..+++.+|++|||||+.+ +. ..++++|+.++..++++++|||+||||+ .+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~-------~~~~~~~~~~~~~~~~~~iivviNK~Dl--~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV-------MPQTREHVFLARTLGINQLIVAINKMDA--VN 153 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCC-------CcchHHHHHHHHHcCCCeEEEEEEcccc--cc
Confidence 9999999999999999999999999999999999998 54 3699999999999998779999999999 55
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEE
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v 316 (475)
|++++++.+.+++..+++..++.. ..++++|+||++|.|+.++... ++||+|++|+++|+.++.|.+..+.||+|+|
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~-~~~~ii~iSA~~g~gi~~~~~~--~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i 230 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKP-DDIPFIPVSAFEGDNVVKKSEN--MPWYNGPTLLEALDNLKPPEKPTDKPLRIPI 230 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCc-CcceEEEeecccCCCccccccC--CCcccHHHHHHHHhcCCCCccccCCCcEEEE
Confidence 677788889999999999888752 2478999999999999998754 8999999999999999988888889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 317 ~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
.++| ++.|++++|+|.+|+|++||+|.++|++..++|++|+.++.+++.|.||++|+++|++++..++++||+|++++
T Consensus 231 ~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 231 QDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred EEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 9999 57899999999999999999999999999999999999999999999999999999999888999999999998
Q ss_pred CCcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 395 KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 395 ~~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
.++..+++|+|+|.| +.+ .+|+.||++++|+|+.+++|+|.+|.+.+|++||+..+++|.+|++|+.++|+|+|+
T Consensus 311 ~~~~~~~~f~a~v~~---l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~ 386 (425)
T PRK12317 311 NPPTVAEEFTAQIVV---LQHPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPT 386 (425)
T ss_pred CCCCcccEEEEEEEE---ECCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEEC
Confidence 888889999999999 555 789999999999999999999999999999999988888999999999999999986
No 7
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=6.8e-69 Score=554.41 Aligned_cols=383 Identities=39% Similarity=0.703 Sum_probs=356.6
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++++||+++||+|||||||+++|++.+|.++.+.+.++++++...|+.++.|+|++|..++|+++|+|++.....+.+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|+|||||++|..++..++..+|++|||||+..+.++ ...++++|+.++..++++++|||+||+|+ .+|+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl--~~~~ 157 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE----VQPQTREHAFLARTLGINQLIVAINKMDS--VNYD 157 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc----cCCchHHHHHHHHHcCCCeEEEEEEChhc--cCcc
Confidence 99999999999999999999999999999999999998542 23689999998888888779999999999 6677
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEE
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~ 318 (475)
+++++.+.+++..+++..++.. ..++++|+||++|.|+.++... +|||.|++|++.|+.+++|.+..+.||+|+|.+
T Consensus 158 ~~~~~~~~~ei~~~~~~~g~~~-~~~~~i~iSA~~g~ni~~~~~~--~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~ 234 (426)
T TIGR00483 158 EEEFEAIKKEVSNLIKKVGYNP-DTVPFIPISAWNGDNVIKKSEN--TPWYKGKTLLEALDALEPPEKPTDKPLRIPIQD 234 (426)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceEEEeeccccccccccccC--CccccchHHHHHHhcCCCCCCccCCCcEEEEEE
Confidence 8889999999999999888752 3579999999999999997654 899999999999999988888888999999999
Q ss_pred EE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCCCC
Q 011910 319 KF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (475)
Q Consensus 319 ~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (475)
+| ++.|+|++|+|.+|.|++||+|.++|.+..++|++|+.++.++++|.||++|+++|++++..++++||+|++++.+
T Consensus 235 v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~ 314 (426)
T TIGR00483 235 VYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNP 314 (426)
T ss_pred EEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCC
Confidence 99 5789999999999999999999999999999999999999999999999999999999998999999999999888
Q ss_pred cccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 397 VAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 397 ~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
++.+++|+|++.| +.+ .+|+.||++++|+|+.+++|+|..|...+|+++++..+++|++|++|+.++|+|.|+.
T Consensus 315 ~~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~ 389 (426)
T TIGR00483 315 PKVAKEFTAQIVV---LQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTK 389 (426)
T ss_pred CceeeEEEEEEEE---ECCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECC
Confidence 8889999999999 555 7899999999999999999999999999999999988889999999999999999864
No 8
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.9e-66 Score=531.20 Aligned_cols=370 Identities=29% Similarity=0.487 Sum_probs=340.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCcc--chhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~--s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
++|+++||+|||||||+++|++.+|.++.+.+.++.+++...|.+ ||.|+|++|..++|++||+|++.+...+.+.++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999999999999999999999999888886 799999999999999999999999999999999
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHH
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~ 240 (475)
+++|+|||||.+|.+++..++..+|++||||||..|.. .||++|+.++..++++++|||+||||+ .+|+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-------~qt~~~~~~~~~~~~~~iivviNK~D~--~~~~~~ 151 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-------EQTRRHSYIASLLGIRHVVLAVNKMDL--VDYDEE 151 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------cccHHHHHHHHHcCCCcEEEEEEeccc--ccchHH
Confidence 99999999999999999999999999999999999975 699999999999999889999999999 567778
Q ss_pred HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEEE
Q 011910 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 320 (475)
Q Consensus 241 ~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~~ 320 (475)
+++.+.+++..+++..++. +++++|+||++|.|+.++.+ .++||.|++|.++|+.++.|.+..+.||+++|.+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~ 226 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFR---DVTFIPLSALKGDNVVSRSE--SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVN 226 (406)
T ss_pred HHHHHHHHHHHHHHHcCCC---CccEEEeecccCCCCccccc--CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEe
Confidence 8899999999888888774 67899999999999998754 489999999999999998888888899999999987
Q ss_pred cc--CCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCCCCcc
Q 011910 321 KD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVA 398 (475)
Q Consensus 321 ~~--~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~ 398 (475)
+. .+..+.|+|.+|+|++||+|.++|++..++|++|+.++.+++.|.||++|+++|++ ..++++||||++++.+++
T Consensus 227 ~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~ 304 (406)
T TIGR02034 227 RPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPE 304 (406)
T ss_pred ecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCC
Confidence 42 23447899999999999999999999999999999999999999999999999984 467999999999998888
Q ss_pred cccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 399 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 399 ~~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
.++.|+|++.+ +++.+|+.||++++|+|+.+++|+|..|..++|++||++ .+|.+|++|+.++|+|.|+.
T Consensus 305 ~~~~f~a~i~~---l~~~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~--~~~~~l~~~~~~~v~l~~~~ 374 (406)
T TIGR02034 305 VADQFAATLVW---MAEEPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEK--GAAKSLELNEIGRVNLSLDE 374 (406)
T ss_pred cceEEEEEEEE---eChhhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcc--cCCcccCCCCEEEEEEEECC
Confidence 89999999999 456789999999999999999999999999999999985 36899999999999999864
No 9
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=6.9e-66 Score=534.47 Aligned_cols=376 Identities=29% Similarity=0.447 Sum_probs=342.7
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCcc--chhhhhhccCchhhhhcceEEeeeeeEE
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHF 155 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~--s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 155 (475)
..+..++|+++||+|||||||+++|++.+|.++.+.+.++++++...|++ ++.|+|++|..++|++||+|++.....+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 35677999999999999999999999999999999999999999888875 7899999999999999999999999999
Q ss_pred eeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCC
Q 011910 156 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 156 ~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~ 235 (475)
.+++++++|+|||||.+|..++..++..+|++||||||..|.. .||++|+.++..++++++|||+||||+ .
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-------~qt~~~~~l~~~lg~~~iIvvvNKiD~--~ 173 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-------DQTRRHSFIATLLGIKHLVVAVNKMDL--V 173 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------ccchHHHHHHHHhCCCceEEEEEeecc--c
Confidence 9999999999999999999999999999999999999999965 699999999999998889999999999 6
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEE
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 315 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~ 315 (475)
+|+++++.++.+++..+++.+++. ...+++|+||++|+|+.++.. .+|||+|++|+++|+.++.|.+..+.|||++
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~--~~~~iipvSA~~g~ni~~~~~--~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~ 249 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGN--LDIRFVPLSALEGDNVVSQSE--SMPWYSGPTLLEVLETVDIQRVVDAQPFRFP 249 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCC--CCceEEEEEeecCCCcccccc--cccccchhhHHHHHhhcCCCCCCCCCCceee
Confidence 677888999999998888877642 257899999999999998754 3899999999999999988888888999999
Q ss_pred EEEEEcc--CCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecC
Q 011910 316 IIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 393 (475)
Q Consensus 316 v~~~~~~--~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 393 (475)
|.++++. ....+.|+|.+|+|++||+|+++|++..++|++|+.++.+++.|.||++|+++|++ ..++++||||+++
T Consensus 250 I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~ 327 (474)
T PRK05124 250 VQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAA 327 (474)
T ss_pred EEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECC
Confidence 9999752 12237899999999999999999999999999999999999999999999999985 4679999999999
Q ss_pred CCCcccccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 394 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 394 ~~~~~~~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
+.++..++.|+|++.|| ...+|+.||++++|+|+.+++|+|..|..++|++||+.. +|.+|++|+.++|+|.++.
T Consensus 328 ~~~~~~~~~f~a~i~~l---~~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~--~~~~l~~g~~a~v~l~~~~ 402 (474)
T PRK05124 328 DEALQAVQHASADVVWM---AEQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQR--EAENLPLNGIGLVELTFDE 402 (474)
T ss_pred CCCCccceEEEEEEEEe---CCcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCccc--CccccCCCCEEEEEEEECC
Confidence 88888899999999994 456799999999999999999999999999999999853 6899999999999999864
No 10
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-66 Score=490.61 Aligned_cols=374 Identities=32% Similarity=0.511 Sum_probs=347.0
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcC--ccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKS--RESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g--~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
.+..++++.+|++|.|||||+|+||+++..+.++++...++.+...| ...+.++.++|..+.||+.||||++++..|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 35678999999999999999999999999999999988888776443 4568899999999999999999999999999
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
++.++|.+.|||||+.|.++|..|++.||.+|++|||..|+. .||++|..++..+|++|+||++||||+ ++
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-------~QTrRHs~I~sLLGIrhvvvAVNKmDL--vd 153 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-------EQTRRHSFIASLLGIRHVVVAVNKMDL--VD 153 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-------HHhHHHHHHHHHhCCcEEEEEEeeecc--cc
Confidence 999999999999999999999999999999999999999986 599999999999999999999999999 99
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEE
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v 316 (475)
|++++|++|..+...+.+.+|+. ...+||+||+.|+|+...+. .||||.||+|++.|+.+........++|||+|
T Consensus 154 y~e~~F~~I~~dy~~fa~~L~~~---~~~~IPiSAl~GDNV~~~s~--~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPV 228 (431)
T COG2895 154 YSEEVFEAIVADYLAFAAQLGLK---DVRFIPISALLGDNVVSKSE--NMPWYKGPTLLEILETVEIADDRSAKAFRFPV 228 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCC---cceEEechhccCCccccccc--CCCcccCccHHHHHhhccccccccccceeece
Confidence 99999999999999999999987 56999999999999998754 59999999999999999887777788999999
Q ss_pred EEEEcc-C-CeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 317 IDKFKD-M-GTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 317 ~~~~~~-~-G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
+.+.+. . =+-+.|+|.+|++++||.|++.|++...+|++|..+..++++|.+|+.|++.|. +..++.||++++.++
T Consensus 229 Q~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~ 306 (431)
T COG2895 229 QYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAAD 306 (431)
T ss_pred EEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccC
Confidence 999853 2 234899999999999999999999999999999999999999999999999998 678899999999999
Q ss_pred CCcccccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 395 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 395 ~~~~~~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
.+|..+..|.|.++| +...++.+|..+.+.+++..+.++|..|.+.+|.+|..+. .++.|+-++.+.|+|.++.
T Consensus 307 ~~~~~~~~f~A~vvW---m~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~--~a~~l~lN~Ig~v~i~~~~ 380 (431)
T COG2895 307 APPAVADAFDADVVW---MDEEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE--GAESLPLNEIGRVRISFDK 380 (431)
T ss_pred CCcchhhhcceeEEE---ecCCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccc--cccccCCCcceEEEEecCC
Confidence 999999999999999 6567889999999999999999999999999999988765 7889999999999998863
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=3.7e-62 Score=526.19 Aligned_cols=374 Identities=30% Similarity=0.476 Sum_probs=342.0
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCc--cchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
.+..++|+++||+|||||||+++|++.+|.+..+.+.++.+++...|. .++.++|++|..++|+++|+|++.+...+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 455678999999999999999999999999999999999999888887 789999999999999999999999999999
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
+++.+++|+|||||.+|.++++.++..+|++|||||+..|.+ .|+++|+.++..++++++|||+||||+ .+
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-------~~t~e~~~~~~~~~~~~iivvvNK~D~--~~ 171 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-------TQTRRHSFIASLLGIRHVVLAVNKMDL--VD 171 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-------ccCHHHHHHHHHhCCCeEEEEEEeccc--cc
Confidence 999999999999999999999999999999999999999965 699999999999998889999999999 66
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEE
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v 316 (475)
|++++++++..++..+++.+++. +++++|+||++|.|+.++.. .+|||.|++|+++|+.++.|.+..++||+++|
T Consensus 172 ~~~~~~~~i~~~i~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i 246 (632)
T PRK05506 172 YDQEVFDEIVADYRAFAAKLGLH---DVTFIPISALKGDNVVTRSA--RMPWYEGPSLLEHLETVEIASDRNLKDFRFPV 246 (632)
T ss_pred chhHHHHHHHHHHHHHHHHcCCC---CccEEEEecccCCCcccccc--CCCcccHhHHHHHHhcCCCCCCcCCCCceeeE
Confidence 77888999999999888888874 67899999999999998754 38999999999999999887777889999999
Q ss_pred EEEEcc--CCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 317 IDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 317 ~~~~~~--~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
.++++. .+..+.|+|.+|+|++||+|+++|++..++|+||++++.+++.|.||++|+++|++ ..++++||||++++
T Consensus 247 ~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~ 324 (632)
T PRK05506 247 QYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARAD 324 (632)
T ss_pred EEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCC
Confidence 999752 22347899999999999999999999999999999999999999999999999984 46799999999999
Q ss_pred CCcccccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 395 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 395 ~~~~~~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
.+++.++.|+|++.| +++.++..||++++|+|+.+++|+|..|..++|.+|++. .+|.+|++|+.++|+|.++.
T Consensus 325 ~~~~~~~~f~a~i~~---l~~~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~v~l~~~~ 398 (632)
T PRK05506 325 NRPEVADQFDATVVW---MAEEPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGRCNLSTDA 398 (632)
T ss_pred CCCcceeEEEEEEEE---ecccccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEEEEEEECC
Confidence 888889999999999 556567799999999999999999999999999988874 68999999999999998863
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.7e-60 Score=489.36 Aligned_cols=360 Identities=28% Similarity=0.468 Sum_probs=310.7
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
..++++||+++||+|||||||+++|++.++.+..+...+ ...+|...+|+.+|+|++.....|.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 467889999999999999999999998887654332111 23689999999999999999999999
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
++++++|||||||.+|++++++++..+|++||||||..|.. +||++|+.++..+|+|++||++||||+ .+
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-------~qt~e~~~~~~~~gi~~iIvvvNK~Dl--~~- 211 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQ--VD- 211 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEecccc--cC-
Confidence 99999999999999999999999999999999999999964 799999999999999989999999999 43
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc---cccCCCCCCC-hhhHHHHhhhc-CCCCCCCCCCc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR---VDKSLCPWWN-GPCLFEALDRI-EITPRDPNGPF 312 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l---~~~~~~~w~~-g~~l~~~l~~l-~~~~~~~~~~~ 312 (475)
.++.++.+.+++..+|+..||+. .+++++|+||++|.|+... ......+||+ +++|++.|+.+ +.|.++.+.||
T Consensus 212 ~~~~~~~i~~~i~~~l~~~g~~~-~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~ 290 (478)
T PLN03126 212 DEELLELVELEVRELLSSYEFPG-DDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPF 290 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-CcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccce
Confidence 35568888889999999998863 4789999999999876421 1112358997 57899888774 45777788999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC--CeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCcee
Q 011910 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (475)
Q Consensus 313 ~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (475)
+|+|+++| ++.|+|++|+|.+|.|++||+|.++|.+ ..++|++|+.++.+++.|.|||+|+++|++++..++++||
T Consensus 291 r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~ 370 (478)
T PLN03126 291 LLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGM 370 (478)
T ss_pred eeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCcc
Confidence 99999999 5789999999999999999999999975 5789999999999999999999999999999999999999
Q ss_pred EEecCCCCcccccEEEEEEEEeeccc---cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEE
Q 011910 389 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 465 (475)
Q Consensus 389 vl~~~~~~~~~~~~f~A~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~ 465 (475)
||++++. +++++.|+|++.||+... +.+|+.||++++|+|+.+++|+|..|....+ ..|++|++|+.+
T Consensus 371 VL~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a 441 (478)
T PLN03126 371 VLAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRV 441 (478)
T ss_pred EEecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEE
Confidence 9999875 556899999999965211 3589999999999999999999999976442 357888999999
Q ss_pred EEEEEec
Q 011910 466 VCRIQVC 472 (475)
Q Consensus 466 ~~~~~l~ 472 (475)
+|+|+|+
T Consensus 442 ~v~l~~~ 448 (478)
T PLN03126 442 KMVVELI 448 (478)
T ss_pred EEEEEEC
Confidence 9888876
No 13
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=5.3e-59 Score=477.03 Aligned_cols=360 Identities=30% Similarity=0.462 Sum_probs=310.6
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
.+++++||+++||+|||||||+++|++..+.+..+.. ..+ ..+|....|+++|+|++.....|.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~--------------~~~-~~~d~~~~e~~rg~T~~~~~~~~~~ 72 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA--------------KKY-DEIDSAPEEKARGITINTAHVEYET 72 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc--------------ccc-ccccCChhhhcCCEeEEccEEEEcc
Confidence 3578899999999999999999999988776543221 111 2589999999999999999999999
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
++++++|+|||||.+|+.++++++..+|+++|||||..|.. .|+++|+.++..+++|++|+|+||||+ .++
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~~~~~~~~~~g~~~iIvvvNK~D~--~~~ 143 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTKEHILLAKQVGVPNIVVFLNKEDQ--VDD 143 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEccCC--CCH
Confidence 99999999999999999999999999999999999999864 699999999999999988899999999 432
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccccc---CCCCCCCh-hhHHHHhhh-cCCCCCCCCCCc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK---SLCPWWNG-PCLFEALDR-IEITPRDPNGPF 312 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~---~~~~w~~g-~~l~~~l~~-l~~~~~~~~~~~ 312 (475)
++.++.+.+++..+|+..+++. ..++++|+||++|+|+...... ...+||++ ++|++.|+. ++.|.++.+.||
T Consensus 144 -~~~~~~~~~~l~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~ 221 (409)
T CHL00071 144 -EELLELVELEVRELLSKYDFPG-DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPF 221 (409)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCC-CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCE
Confidence 4567888889999999988863 3589999999999988654321 12589985 999998887 566777788999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCC--CCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCcee
Q 011910 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (475)
Q Consensus 313 ~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (475)
+++|+++| ++.|++++|+|.+|+|++||.|.+.|. +..++|++|+.++.+++.|.|||+|+++|++++..++++||
T Consensus 222 r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~ 301 (409)
T CHL00071 222 LMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGM 301 (409)
T ss_pred EEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeE
Confidence 99999999 578999999999999999999998764 46799999999999999999999999999999888999999
Q ss_pred EEecCCCCcccccEEEEEEEEeeccc---cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEE
Q 011910 389 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 465 (475)
Q Consensus 389 vl~~~~~~~~~~~~f~A~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~ 465 (475)
||++++. ++++++|+|+|.+|+... ..+|..||++++|+|+.+++|+|..|... ++ .+|++|++|+.+
T Consensus 302 vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~~----~~~~~l~~g~~a 372 (409)
T CHL00071 302 VLAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----DG----SKTEMVMPGDRI 372 (409)
T ss_pred EEecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----CC----CCCcEecCCCEE
Confidence 9999874 567899999999966321 36799999999999999999999998653 12 468899999999
Q ss_pred EEEEEec
Q 011910 466 VCRIQVC 472 (475)
Q Consensus 466 ~~~~~l~ 472 (475)
+|+|.|+
T Consensus 373 ~v~l~~~ 379 (409)
T CHL00071 373 KMTVELI 379 (409)
T ss_pred EEEEEEC
Confidence 9999986
No 14
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1e-58 Score=472.96 Aligned_cols=349 Identities=30% Similarity=0.429 Sum_probs=298.4
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++++||+++||+|||||||+++|++..+ ..|+.++...+.+|...+|+++|+|++.+...+.++
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~ 73 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA 73 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC
Confidence 46789999999999999999999976432 234444434467999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
+.+++|+|||||.+|+.++++++..+|+++||||+..|.. .|+++|+.++..+++|++|+|+||||+. + .
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-------~qt~e~l~~~~~~gi~~iivvvNK~Dl~--~-~ 143 (396)
T PRK12735 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDMV--D-D 143 (396)
T ss_pred CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEecCCc--c-h
Confidence 9999999999999999999999999999999999999864 6999999999999999776789999994 3 3
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCCh-hhHHHHhhh-cCCCCCCCCCCceEEE
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMPI 316 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g-~~l~~~l~~-l~~~~~~~~~~~~~~v 316 (475)
++.++.+.+++..+++..++.. .+++++|+||++|.|... .++||.+ ++|++.|+. ++.|.+..++||+++|
T Consensus 144 ~~~~~~~~~ei~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~-----~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I 217 (396)
T PRK12735 144 EELLELVEMEVRELLSKYDFPG-DDTPIIRGSALKALEGDD-----DEEWEAKILELMDAVDSYIPEPERAIDKPFLMPI 217 (396)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-CceeEEecchhccccCCC-----CCcccccHHHHHHHHHhcCCCCCccCCCCeEEEE
Confidence 4567778888999999888752 358999999999999643 3789964 899998876 5667778889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCeEEecCC--CCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 317 ~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
+++| ++.|+|++|+|.+|+|++||+|+++|. +..++|++|++++++++.|.|||+|+++|++++..++++|+||++
T Consensus 218 ~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~ 297 (396)
T PRK12735 218 EDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAK 297 (396)
T ss_pred EEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEc
Confidence 9999 588999999999999999999999987 468899999999999999999999999999999899999999999
Q ss_pred CCCCcccccEEEEEEEEeeccc---cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEE
Q 011910 393 VAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 469 (475)
Q Consensus 393 ~~~~~~~~~~f~A~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~ 469 (475)
++. +++++.|+|++.+|+... +.+|+.||++++|+|+.+++|+|... .+|++|++|+.++|+|
T Consensus 298 ~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l~~g~~a~v~l 363 (396)
T PRK12735 298 PGS-IKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIELP-------------EGVEMVMPGDNVKMTV 363 (396)
T ss_pred CCC-CCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEcc-------------CCCceeCCCCEEEEEE
Confidence 874 567899999999966321 35789999999999999999998322 2466677777777777
Q ss_pred Eec
Q 011910 470 QVC 472 (475)
Q Consensus 470 ~l~ 472 (475)
.|+
T Consensus 364 ~~~ 366 (396)
T PRK12735 364 ELI 366 (396)
T ss_pred EEC
Confidence 764
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.1e-58 Score=470.44 Aligned_cols=349 Identities=30% Similarity=0.449 Sum_probs=298.2
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++++||+++||+|||||||+++|++... ..|+......+.+|..++|+++|+|++.....+.+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~ 73 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE 73 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC
Confidence 46789999999999999999999976432 122222223347999999999999999999889889
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
+++++|+|||||.+|+.++.+++..+|++++|||+..|.. .|+++|+.++..+++|.+||++||||+. + .
T Consensus 74 ~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-------~qt~~~~~~~~~~g~p~iiVvvNK~D~~--~-~ 143 (396)
T PRK00049 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDMV--D-D 143 (396)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hHHHHHHHHHHHcCCCEEEEEEeecCCc--c-h
Confidence 9999999999999999999999999999999999999864 6999999999999999666799999994 3 3
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCCh-hhHHHHhhh-cCCCCCCCCCCceEEE
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMPI 316 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g-~~l~~~l~~-l~~~~~~~~~~~~~~v 316 (475)
++.++.+.+++..+|+.+++. ..+++++|+||++|.+-. ..++||.+ ++|+++|+. ++.|.+..++||+|+|
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~-~~~~~iv~iSa~~g~~~~-----~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I 217 (396)
T PRK00049 144 EELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALEGD-----DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPI 217 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-ccCCcEEEeecccccCCC-----CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEE
Confidence 456777888899999998885 246899999999997732 24799975 899998887 6777778889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCeEEecCC--CCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 317 ~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
.++| ++.|+|++|+|.+|+|++||+|.+.|. +..++|+||++++.++++|.|||+|+++|++++..++++|+||++
T Consensus 218 ~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 218 EDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred EEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 9999 588999999999999999999999986 678999999999999999999999999999998899999999999
Q ss_pred CCCCcccccEEEEEEEEeeccc---cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEE
Q 011910 393 VAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 469 (475)
Q Consensus 393 ~~~~~~~~~~f~A~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~ 469 (475)
++. +++++.|+|++.+|+... +++|+.||++++|+|+.+++|+| .+ ..+|++|++|+.++|+|
T Consensus 298 ~~~-~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i-~l------------~~~~~~l~~g~~a~v~i 363 (396)
T PRK00049 298 PGS-ITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVI-EL------------PEGVEMVMPGDNVEMTV 363 (396)
T ss_pred CCC-CCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEE-Ee------------cCCCcccCCCCEEEEEE
Confidence 874 556799999999966211 36899999999999999999998 32 12467788888888887
Q ss_pred Eec
Q 011910 470 QVC 472 (475)
Q Consensus 470 ~l~ 472 (475)
.|+
T Consensus 364 ~~~ 366 (396)
T PRK00049 364 ELI 366 (396)
T ss_pred EEC
Confidence 765
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.6e-58 Score=468.73 Aligned_cols=347 Identities=29% Similarity=0.447 Sum_probs=294.9
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++++||+++||+|||||||+++|+...+ ..|+.++...+++|..++|+++|+|++.....+.++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~ 73 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE 73 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhccccccchhhhcCCHHHHhcCccEEEEeeEecCC
Confidence 57789999999999999999999964322 124444444457999999999999999999999889
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|+|||||.+|+.++++++..+|+++||||+.+|.. .|+++|+.++..+|+|++|+|+||||+. + +
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-------~~t~~~~~~~~~~g~~~~IvviNK~D~~--~-~ 143 (394)
T PRK12736 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYLVVFLNKVDLV--D-D 143 (394)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCEEEEEEEecCCc--c-h
Confidence 9999999999999999999999999999999999999864 6999999999999999888999999993 2 3
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCCh-hhHHHHhhh-cCCCCCCCCCCceEEE
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMPI 316 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g-~~l~~~l~~-l~~~~~~~~~~~~~~v 316 (475)
++.++.+.+++..+|+..++.. ..++++|+||++|.+- ..+||.+ ++|++.|.. ++.|.++.++||+++|
T Consensus 144 ~~~~~~i~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~~-------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I 215 (394)
T PRK12736 144 EELLELVEMEVRELLSEYDFPG-DDIPVIRGSALKALEG-------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPV 215 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc-CCccEEEeeccccccC-------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence 4566777788999999988863 3579999999998542 1479864 788887765 6777778889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCeEEecCC--CCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 317 ~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
+++| ++.|+|++|+|.+|+|++||+|+++|. +..++|++|++++.+++.|.|||+|+++|++++..++++|+||++
T Consensus 216 ~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~ 295 (394)
T PRK12736 216 EDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAK 295 (394)
T ss_pred EEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEec
Confidence 9999 588999999999999999999999997 567999999999999999999999999999998889999999999
Q ss_pred CCCCcccccEEEEEEEEeeccc---cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEE
Q 011910 393 VAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 469 (475)
Q Consensus 393 ~~~~~~~~~~f~A~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~ 469 (475)
++. ++++++|+|++.+|+... +.+|+.||++++|+|+.+++|+|..+ .+|++|++|+.++|+|
T Consensus 296 ~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l~~g~~a~v~l 361 (394)
T PRK12736 296 PGS-IKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELP-------------EGTEMVMPGDNVTITV 361 (394)
T ss_pred CCC-CCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEec-------------CCcceeCCCCEEEEEE
Confidence 874 456799999999965211 26789999999999999999998432 2456666777777776
Q ss_pred Eec
Q 011910 470 QVC 472 (475)
Q Consensus 470 ~l~ 472 (475)
.|+
T Consensus 362 ~~~ 364 (394)
T PRK12736 362 ELI 364 (394)
T ss_pred EEC
Confidence 654
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.8e-57 Score=464.24 Aligned_cols=347 Identities=30% Similarity=0.452 Sum_probs=292.5
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++++||+++||+|||||||+++|++... ..|+.++...+.+|..++|+++|+|++.....+.+.
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~ 73 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA---------------KEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE 73 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH---------------HhhcccccccccccCCHHHHhcCcceeeEEEEEcCC
Confidence 57789999999999999999999975422 234444444578999999999999999999999888
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
+++++|+|||||++|+.++++++..+|+++||||+.+|.. .|+++|+.++..+++|++|+|+||||+ .++
T Consensus 74 ~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~e~l~~~~~~gi~~iIvvvNK~Dl--~~~- 143 (394)
T TIGR00485 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VDD- 143 (394)
T ss_pred CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEeccc--CCH-
Confidence 9999999999999999999999999999999999999864 699999999999999977789999999 432
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCC-hhhHHHHhhhc-CCCCCCCCCCceEEE
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDRI-EITPRDPNGPFRMPI 316 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~-g~~l~~~l~~l-~~~~~~~~~~~~~~v 316 (475)
++.++.+.++++.+++..++.. .+++++|+||++|.+-. .+||. +++|++.|+.+ +.|.++.++||+++|
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~g~-------~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V 215 (394)
T TIGR00485 144 EELLELVEMEVRELLSEYDFPG-DDTPIIRGSALKALEGD-------AEWEAKILELMDAVDEYIPTPERETDKPFLMPI 215 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-cCccEEECccccccccC-------CchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEE
Confidence 3466777788999999888752 35899999999986422 46996 48888888764 667777889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCeEEecCC--CCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 317 ~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
+++| ++.|+|++|+|.+|+|++||+|.+.|. +..++|++|+.++.+++.|.|||+|+++|++++..++++|+||++
T Consensus 216 ~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~ 295 (394)
T TIGR00485 216 EDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAK 295 (394)
T ss_pred EEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEec
Confidence 9999 578999999999999999999999984 578999999999999999999999999999998889999999999
Q ss_pred CCCCcccccEEEEEEEEeeccc---cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEE
Q 011910 393 VAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 469 (475)
Q Consensus 393 ~~~~~~~~~~f~A~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~ 469 (475)
++. +++++.|+|++.+|+... +.+|+.||++++|+|+.+++|+|..+. +|++|++|+.++|+|
T Consensus 296 ~~~-~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~~-------------~~~~l~~g~~a~v~~ 361 (394)
T TIGR00485 296 PGS-IKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLPE-------------GVEMVMPGDNVKMTV 361 (394)
T ss_pred CCC-CCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEecC-------------CcceeCCCCEEEEEE
Confidence 864 456799999999965211 368999999999999999999996432 345555555555555
Q ss_pred Eec
Q 011910 470 QVC 472 (475)
Q Consensus 470 ~l~ 472 (475)
.|+
T Consensus 362 ~~~ 364 (394)
T TIGR00485 362 ELI 364 (394)
T ss_pred EEC
Confidence 554
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.1e-56 Score=461.57 Aligned_cols=351 Identities=28% Similarity=0.438 Sum_probs=290.2
Q ss_pred ccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhh-hccCchhhhhcceEEeeee
Q 011910 74 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY-IMDTNEEERIKGKTVEVGR 152 (475)
Q Consensus 74 ~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~-~~d~~~~e~~~g~ti~~~~ 152 (475)
...+..++++||+++||+|||||||+++|.... ...|+.. ...| .+|..++|+++|+|++...
T Consensus 53 ~~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~ 116 (447)
T PLN03127 53 ATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAK-AVAFDEIDKAPEEKARGITIATAH 116 (447)
T ss_pred hhhhcCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhccc-ceeeccccCChhHhhcCceeeeeE
Confidence 344557889999999999999999999994321 0122221 1222 6899999999999999999
Q ss_pred eEEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 153 AHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 153 ~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
..|++++++++|+|||||.+|+.++++++..+|+++||||+.+|.+ .|+++|+.++..+++|++|+|+||||+
T Consensus 117 ~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-------~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 117 VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred EEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 9999999999999999999999999999999999999999999864 699999999999999977889999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccc---cccccccccCCCCCCChhhHHHHhhh-cCCCCCCC
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDP 308 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g---~gi~~l~~~~~~~w~~g~~l~~~l~~-l~~~~~~~ 308 (475)
.+ .++.++.+.+++..+++.++++ ...++++|+||+++ .|+. ..|+.+++|++.|+. ++.|.+..
T Consensus 190 --v~-~~~~~~~i~~~i~~~l~~~~~~-~~~vpiip~Sa~sa~~g~n~~-------~~~~~i~~Ll~~l~~~lp~p~r~~ 258 (447)
T PLN03127 190 --VD-DEELLELVEMELRELLSFYKFP-GDEIPIIRGSALSALQGTNDE-------IGKNAILKLMDAVDEYIPEPVRVL 258 (447)
T ss_pred --CC-HHHHHHHHHHHHHHHHHHhCCC-CCcceEEEeccceeecCCCcc-------cccchHHHHHHHHHHhCCCCCccc
Confidence 43 2346666777888888887775 24689999998754 4422 346778889988776 57777788
Q ss_pred CCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCC----CCeEEEEEEEECCccceeeCCCCEEEEEeccCCcc
Q 011910 309 NGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN----KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEE 382 (475)
Q Consensus 309 ~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~----~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~ 382 (475)
++||+++|+++| ++.|+|++|+|.+|.|++||+|.+.|. +..++|++|+.++.++++|.|||+|+++|++++..
T Consensus 259 ~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~ 338 (447)
T PLN03127 259 DKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKRE 338 (447)
T ss_pred ccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHH
Confidence 899999999999 588999999999999999999999865 45789999999999999999999999999999999
Q ss_pred CCCceeEEecCCCCcccccEEEEEEEEeeccc---cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceee
Q 011910 383 DILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFV 459 (475)
Q Consensus 383 ~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l 459 (475)
++++||||++++ +++++++|+|++.+|+... +++|..||++++|+|+.+++|+|... .+|++|
T Consensus 339 ~i~rG~Vl~~~~-~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~~-------------~~~~~l 404 (447)
T PLN03127 339 DVQRGQVICKPG-SIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVELP-------------EGVKMV 404 (447)
T ss_pred HCCCccEEecCC-CCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEec-------------cCcccc
Confidence 999999999985 4678999999999965211 36789999999999999999998532 234555
Q ss_pred eCCCEEEEEEEec
Q 011910 460 KNGAIVVCRIQVC 472 (475)
Q Consensus 460 ~~g~~~~~~~~l~ 472 (475)
++|+.++++|.|+
T Consensus 405 ~~gd~a~v~l~~~ 417 (447)
T PLN03127 405 MPGDNVTAVFELI 417 (447)
T ss_pred CCCCEEEEEEEEC
Confidence 5555555555553
No 19
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.4e-53 Score=437.42 Aligned_cols=335 Identities=22% Similarity=0.349 Sum_probs=276.5
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe-
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE- 156 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~- 156 (475)
..++.++|+++||+|||||||+++|. +. .+|..++|.+||+|++.++..+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLt---g~-------------------------~~~r~~~E~~rGiTi~lGfa~~~~ 81 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALS---GV-------------------------KTVRFKREKVRNITIKLGYANAKI 81 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHh---CC-------------------------CcccchhhHHhCCchhcccccccc
Confidence 34677899999999999999999993 11 24566788999999988876542
Q ss_pred --------------eC------------------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCC
Q 011910 157 --------------TE------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEK 204 (475)
Q Consensus 157 --------------~~------------------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~ 204 (475)
.. .+.++|+|||||.+|+++|+++++.+|+++|||||.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~------ 155 (460)
T PTZ00327 82 YKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCP------ 155 (460)
T ss_pred ccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCcc------
Confidence 11 2479999999999999999999999999999999998621
Q ss_pred CcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccC
Q 011910 205 GGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS 284 (475)
Q Consensus 205 ~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~ 284 (475)
..||++|+.++..++++++|||+||||+...+ .+.+..+++..+++.... ...++||+||++|.|++.
T Consensus 156 ~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~----~~~~~~~ei~~~l~~~~~---~~~~iipVSA~~G~nI~~----- 223 (460)
T PTZ00327 156 QPQTSEHLAAVEIMKLKHIIILQNKIDLVKEA----QAQDQYEEIRNFVKGTIA---DNAPIIPISAQLKYNIDV----- 223 (460)
T ss_pred chhhHHHHHHHHHcCCCcEEEEEecccccCHH----HHHHHHHHHHHHHHhhcc---CCCeEEEeeCCCCCCHHH-----
Confidence 26999999999999999899999999995433 344445555555554322 367999999999999976
Q ss_pred CCCCCChhhHHHHhh-hcCCCCCCCCCCceEEEEEEE--cc--------CCeEEEEEEEEeeEecCCeEEecCCC-----
Q 011910 285 LCPWWNGPCLFEALD-RIEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNK----- 348 (475)
Q Consensus 285 ~~~w~~g~~l~~~l~-~l~~~~~~~~~~~~~~v~~~~--~~--------~G~v~~g~v~~G~l~~gd~v~i~p~~----- 348 (475)
|++.|. .++.|.++.+.||+++|.++| ++ .|+|++|+|.+|+|++||+|.++|++
T Consensus 224 ---------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~ 294 (460)
T PTZ00327 224 ---------VLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDS 294 (460)
T ss_pred ---------HHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccc
Confidence 666666 688887888899999999887 22 69999999999999999999999975
Q ss_pred --------CeEEEEEEEECCccceeeCCCCEEEEEec---cCCccCCCceeEEecCCCCcccccEEEEEEEEeecc----
Q 011910 349 --------AQVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL---- 413 (475)
Q Consensus 349 --------~~~~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~---- 413 (475)
..++|+||+.++.++++|.||++|+++|+ +++..++.+||||++++.+++.++.|+|++.|+...
T Consensus 295 ~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~ 374 (460)
T PTZ00327 295 GGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVK 374 (460)
T ss_pred cCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccc
Confidence 35799999999999999999999999988 788889999999999987777888999999996531
Q ss_pred -------c-cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEE
Q 011910 414 -------D-NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ 470 (475)
Q Consensus 414 -------~-~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~ 470 (475)
. ..+|+.||++++|+|+.++.|+|..|...- .......+|.++.+||++++|-.
T Consensus 375 ~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~~~~---~~~l~l~~P~~~~~gdr~ilr~~ 436 (460)
T PTZ00327 375 SQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIKDDG---IAKLELTTPVCTSVGEKIALSRR 436 (460)
T ss_pred ccccccccCCcccCCCCEEEEEecccEEEEEEEEeCCCe---EEEEEECccEeccCCCEEEEEec
Confidence 0 158999999999999999999999885321 12233579999999999999854
No 20
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-53 Score=401.90 Aligned_cols=360 Identities=29% Similarity=0.437 Sum_probs=298.3
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
..+++.||+.+||+|||||||..++-... ...|...+.-..-.|..++|+.|||||+.++..+++
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkil---------------a~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT 114 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKIL---------------AEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET 114 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHH---------------HhccccccccHhhhhcChhhhhccceEeeeeeeeec
Confidence 46889999999999999999998872211 122333333334478999999999999999999999
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
..+.+--+|+|||.||+++|+.|+++.|+|||||.|.+|.+ +||+||+.+++.-|+++++|++||.|+ ++
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-------PQTrEHlLLArQVGV~~ivvfiNKvD~--V~- 184 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-------PQTREHLLLARQVGVKHIVVFINKVDL--VD- 184 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-------cchHHHHHHHHHcCCceEEEEEecccc--cC-
Confidence 99999999999999999999999999999999999999987 699999999999999999999999999 43
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhh-cCCCCCCCCCCceEEE
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFRMPI 316 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~-l~~~~~~~~~~~~~~v 316 (475)
+.+.++-+.-+++++|..+||+ ..+.|+|.-||+..--=.+.- ...-...-|+++++. +|.|.++.+.||.++|
T Consensus 185 d~e~leLVEmE~RElLse~gf~-Gd~~PvI~GSAL~ALeg~~pe----ig~~aI~kLldavDsyip~P~R~~~~pFl~pi 259 (449)
T KOG0460|consen 185 DPEMLELVEMEIRELLSEFGFD-GDNTPVIRGSALCALEGRQPE----IGLEAIEKLLDAVDSYIPTPERDLDKPFLLPI 259 (449)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC-CCCCCeeecchhhhhcCCCcc----ccHHHHHHHHHHHhccCCCcccccCCCceeeh
Confidence 3567778888999999999998 568899998876542111100 000001126677776 8999999999999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC--CeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 317 ~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
.++| .|+|+|++|++.+|+|++|+++.+...+ .+..|..|+++++.+++|.|||.+++-|+|+...+++||||++.
T Consensus 260 e~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~ 339 (449)
T KOG0460|consen 260 EDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAK 339 (449)
T ss_pred hheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEec
Confidence 9999 6999999999999999999999998766 56789999999999999999999999999999999999999999
Q ss_pred CCCCcccccEEEEEEEEeeccc---cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcc-----cccCceeeeCCCE
Q 011910 393 VAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKP-----MKKKVLFVKNGAI 464 (475)
Q Consensus 393 ~~~~~~~~~~f~A~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~-----~~~~p~~l~~g~~ 464 (475)
|+. ..+...|+|++++|..-. |+++..+|.+.+++.+..++|+|.-...+--...|+. ..-+|..|.+||+
T Consensus 340 pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~~~~mvMPGe~~~~~~~Li~pm~le~Gqr 418 (449)
T KOG0460|consen 340 PGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPPEKEMVMPGENVKVEVTLIRPMPLEKGQR 418 (449)
T ss_pred CCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccChHhcccCCCCeEEEEEEecccccCCCce
Confidence 997 678899999999976322 3789999999999999999999876632111233543 2357888889988
Q ss_pred EEEE
Q 011910 465 VVCR 468 (475)
Q Consensus 465 ~~~~ 468 (475)
+-+|
T Consensus 419 FtiR 422 (449)
T KOG0460|consen 419 FTLR 422 (449)
T ss_pred eeEc
Confidence 7665
No 21
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=1.6e-51 Score=392.61 Aligned_cols=343 Identities=29% Similarity=0.440 Sum_probs=290.9
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
....+++|+++||+|||||||+++| .+|..+++. |.+ -.++|..+.|.++|.|-+++..-+-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~-----------G~t----R~~ldv~kHEverGlsa~iS~~v~Gf 175 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGD-----------GAT----RSYLDVQKHEVERGLSADISLRVYGF 175 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEE--EecCCCCCC-----------cch----hhhhhhhhHHHhhccccceeEEEEEe
Confidence 3567789999999999999999998 677776642 110 11455566666666666665544332
Q ss_pred -----------------------CCeeEEEEeCCCCcCcHHHHhhcc--ccCCEEEEEEecCCCccccccCCCcchHHHH
Q 011910 158 -----------------------ETTRFTILDAPGHKSYVPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHV 212 (475)
Q Consensus 158 -----------------------~~~~~~liDtPGh~~f~~~~~~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l 212 (475)
.++.+.|+||-||+.|+.++++|+ +..|+.+|||.|++|++ .+|+||+
T Consensus 176 ~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-------~~tkEHL 248 (527)
T COG5258 176 DDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-------KMTKEHL 248 (527)
T ss_pred cCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-------hhhhHhh
Confidence 245689999999999999999996 47999999999999986 6999999
Q ss_pred HHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcc-------------------cCCeeEEEeeccc
Q 011910 213 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-------------------KKDVQFLPISGLM 273 (475)
Q Consensus 213 ~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-------------------~~~~~iipiSa~~ 273 (475)
.++.++++| +|||+||+|+ + ..++++.+.+++...|+..+--| ..-+|+|.+|+.+
T Consensus 249 gi~~a~~lP-viVvvTK~D~--~--~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVT 323 (527)
T COG5258 249 GIALAMELP-VIVVVTKIDM--V--PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVT 323 (527)
T ss_pred hhhhhhcCC-EEEEEEeccc--C--cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEeccc
Confidence 999999999 9999999999 3 46799999999999998765321 1246999999999
Q ss_pred ccccccccccCCCCCCChhhHHHHhhhcCCCC-CCCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC--
Q 011910 274 GLNMKTRVDKSLCPWWNGPCLFEALDRIEITP-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK-- 348 (475)
Q Consensus 274 g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~-~~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~-- 348 (475)
|+|++- |.+++..+|... .+...||.|+|+++| .|.|+|+.|.|.+|.|+.||+++++|..
T Consensus 324 g~Gldl--------------L~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G 389 (527)
T COG5258 324 GEGLDL--------------LDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDG 389 (527)
T ss_pred CccHHH--------------HHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCC
Confidence 999985 667777777653 356789999999999 5899999999999999999999999976
Q ss_pred --CeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCCCCcccccEEEEEEEEeecccc-ccccCCcEEE
Q 011910 349 --AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAV 425 (475)
Q Consensus 349 --~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~ 425 (475)
..++|+||++|+-++++|.||.+++++|+|++...+++||||+.. .+|+++++|+|++++ |+| +.|+.||.++
T Consensus 390 ~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~v---l~HPT~I~aGye~v 465 (527)
T COG5258 390 KFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLV---LRHPTTIRAGYEPV 465 (527)
T ss_pred cEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhheecceEEE---EeCCcEEecCceee
Confidence 578999999999999999999999999999999999999999987 678999999999999 778 8899999999
Q ss_pred EEEeeeeEEEEEEEeeeeccccCCc------ccccCceeeeCCCEEEEE
Q 011910 426 LHIHAVVEECEIVELLHQIDLKTKK------PMKKKVLFVKNGAIVVCR 468 (475)
Q Consensus 426 ~~~~~~~~~~~i~~i~~~~~~~~g~------~~~~~p~~l~~g~~~~~~ 468 (475)
+|+.++++++++..|.... +++|+ +++.+|.++..||+++||
T Consensus 466 ~H~etI~e~~~f~~id~~~-L~~GD~g~vr~~fkyrP~~v~eGQ~fvFR 513 (527)
T COG5258 466 FHYETIREAVYFEEIDKGF-LMPGDRGVVRMRFKYRPHHVEEGQKFVFR 513 (527)
T ss_pred eEeeEeeheeEEEEccccc-ccCCCcceEEEEEEeCchhhccCcEEEEe
Confidence 9999999999999996544 55665 478899999999999998
No 22
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-51 Score=379.06 Aligned_cols=326 Identities=31% Similarity=0.488 Sum_probs=275.9
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
..+++.||+.+||+|||||||..++-..+. ..|..+..-..-.|..++|++||+||+.+...+++
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la---------------~~~~~~~~~y~~id~aPeEk~rGITIntahveyet 72 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHH---------------hhccccccchhhhccCchHhhcCceeccceeEEec
Confidence 467899999999999999999998833221 11111111122367889999999999999999999
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.+..+|+|||.+|+++|+.++.+.|++||||+|.+|.+ +||++|+.+++..|+|++++++||+|+ ++
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-------PqTrEHiLlarqvGvp~ivvflnK~Dm--vd- 142 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYIVVFLNKVDM--VD- 142 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-------CcchhhhhhhhhcCCcEEEEEEecccc--cC-
Confidence 99999999999999999999999999999999999999987 699999999999999999999999999 54
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCCh-hhHHHHhhh-cCCCCCCCCCCceEE
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 315 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g-~~l~~~l~~-l~~~~~~~~~~~~~~ 315 (475)
+.+.++.+..+++.+|...+|. ..+.|++--||+..-.-. .+|... ..|+++++. +|.|.++.++||+++
T Consensus 143 d~ellelVemEvreLLs~y~f~-gd~~Pii~gSal~ale~~-------~~~~~~i~eLm~avd~yip~Per~~dkPflmp 214 (394)
T COG0050 143 DEELLELVEMEVRELLSEYGFP-GDDTPIIRGSALKALEGD-------AKWEAKIEELMDAVDSYIPTPERDIDKPFLMP 214 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCC-CCCcceeechhhhhhcCC-------cchHHHHHHHHHHHHhcCCCCCCccccccccc
Confidence 5678888999999999999997 457788888876532111 224322 336666665 788999999999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC--CeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEe
Q 011910 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (475)
Q Consensus 316 v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (475)
|.++| .++|++++|||.+|+|++|+.+.+.... .+..|.+++++++..+++.||++|++-|+|+.+.++.||+||+
T Consensus 215 vEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLa 294 (394)
T COG0050 215 VEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLA 294 (394)
T ss_pred ceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEee
Confidence 99999 5899999999999999999999997665 5678999999999999999999999999999999999999999
Q ss_pred cCCCCcccccEEEEEEEEeecc---ccccccCCcEEEEEEeeeeEEEEE
Q 011910 392 SVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEI 437 (475)
Q Consensus 392 ~~~~~~~~~~~f~A~i~~~~~~---~~~~i~~g~~~~~~~~~~~~~~~i 437 (475)
.|++ ..+..+|+|+++++.+- .|+++-.||.|.+++.+..++..+
T Consensus 295 kpgs-i~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i 342 (394)
T COG0050 295 KPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAI 342 (394)
T ss_pred cCCc-ccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeE
Confidence 9875 56789999999997632 248889999999999999888744
No 23
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=8.5e-51 Score=416.06 Aligned_cols=329 Identities=25% Similarity=0.399 Sum_probs=270.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe---
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--- 156 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~--- 156 (475)
++.++|+++||+|||||||+++|. + ..+|...+|++||+|++.++..+.
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt---~-------------------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALT---G-------------------------VWTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHh---C-------------------------eecccCHhHHHcCceeEeccccccccc
Confidence 467899999999999999999982 1 126778889999999998855432
Q ss_pred -----------e------------CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHH
Q 011910 157 -----------T------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 213 (475)
Q Consensus 157 -----------~------------~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~ 213 (475)
+ .++.++|+|||||.+|..+++.+++.+|++||||||.+|.. ..|+++|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~------~~qt~e~l~ 127 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP------QPQTKEHLM 127 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCcc------ccchHHHHH
Confidence 1 14679999999999999999999999999999999999851 269999999
Q ss_pred HHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhh
Q 011910 214 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 293 (475)
Q Consensus 214 ~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~ 293 (475)
.+..++++++|+|+||+|+...++..+.+ +++..+++.... ..++++|+||++|+|+.+
T Consensus 128 ~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~----~~i~~~l~~~~~---~~~~ii~vSA~~g~gi~~-------------- 186 (406)
T TIGR03680 128 ALEIIGIKNIVIVQNKIDLVSKEKALENY----EEIKEFVKGTVA---ENAPIIPVSALHNANIDA-------------- 186 (406)
T ss_pred HHHHcCCCeEEEEEEccccCCHHHHHHHH----HHHHhhhhhccc---CCCeEEEEECCCCCChHH--------------
Confidence 99999998899999999995433332333 334444443211 256899999999999987
Q ss_pred HHHHhhh-cCCCCCCCCCCceEEEEEEEc--c--------CCeEEEEEEEEeeEecCCeEEecCCC------------Ce
Q 011910 294 LFEALDR-IEITPRDPNGPFRMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNK------------AQ 350 (475)
Q Consensus 294 l~~~l~~-l~~~~~~~~~~~~~~v~~~~~--~--------~G~v~~g~v~~G~l~~gd~v~i~p~~------------~~ 350 (475)
|.+.|.. ++.|.++.+.||+++|+++|. + +|+|++|+|.+|+|++||+|.++|++ ..
T Consensus 187 L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~ 266 (406)
T TIGR03680 187 LLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIY 266 (406)
T ss_pred HHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccc
Confidence 5555554 677777788999999999982 2 57899999999999999999999985 24
Q ss_pred EEEEEEEECCccceeeCCCCEEEEEec---cCCccCCCceeEEecCCCCcccccEEEEEEEEeecc-------ccccccC
Q 011910 351 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTA 420 (475)
Q Consensus 351 ~~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~-------~~~~i~~ 420 (475)
++|+||++++.++++|.||++|+|+|+ +++..++++||||++++.+|+.++.|+|++.|+... +..+|+.
T Consensus 267 ~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~ 346 (406)
T TIGR03680 267 TEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKT 346 (406)
T ss_pred eEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCC
Confidence 799999999999999999999999984 788889999999999998788889999999996522 1368999
Q ss_pred CcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEE
Q 011910 421 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVC 467 (475)
Q Consensus 421 g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~ 467 (475)
||++++|+|+.+++|+|..+.. ........+|.++..||++++
T Consensus 347 g~~~~l~~gt~~~~~~v~~~~~----~~~~l~l~~p~~~~~g~r~~~ 389 (406)
T TIGR03680 347 GEVLMLNVGTATTVGVVTSARK----DEIEVKLKRPVCAEEGDRVAI 389 (406)
T ss_pred CCEEEEEEccceEEEEEEEcCC----cEEEEEECCcEEcCCCCEEEE
Confidence 9999999999999999998853 223444689999999999998
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=2.7e-50 Score=411.94 Aligned_cols=330 Identities=25% Similarity=0.390 Sum_probs=269.6
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++.+||+++||+|||||||+++|. + ..+|...+|++||+|++.+...+.+.
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~---~-------------------------~~~d~~~~E~~rg~Ti~~~~~~~~~~ 57 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALT---G-------------------------VWTDRHSEELKRGITIRLGYADATIR 57 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhh---C-------------------------eecccCHhHHhcCcEEEecccccccc
Confidence 4567999999999999999999981 1 13678889999999999876443321
Q ss_pred --------------------------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHH
Q 011910 159 --------------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 212 (475)
Q Consensus 159 --------------------------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l 212 (475)
.+.++|+|||||.+|..+++.++..+|++++|||+.+|.. ..++.+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~------~~~t~~~l 131 (411)
T PRK04000 58 KCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCP------QPQTKEHL 131 (411)
T ss_pred cccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCC------ChhHHHHH
Confidence 3689999999999999999999999999999999998752 26899999
Q ss_pred HHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChh
Q 011910 213 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGP 292 (475)
Q Consensus 213 ~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~ 292 (475)
..+..++++++++|+||+|+...+ ......+++..+++... ...++++|+||++|.|+.+|
T Consensus 132 ~~l~~~~i~~iiVVlNK~Dl~~~~----~~~~~~~~i~~~l~~~~---~~~~~ii~vSA~~g~gI~~L------------ 192 (411)
T PRK04000 132 MALDIIGIKNIVIVQNKIDLVSKE----RALENYEQIKEFVKGTV---AENAPIIPVSALHKVNIDAL------------ 192 (411)
T ss_pred HHHHHcCCCcEEEEEEeeccccch----hHHHHHHHHHHHhcccc---CCCCeEEEEECCCCcCHHHH------------
Confidence 999889987799999999994332 22223334444444321 12568999999999999874
Q ss_pred hHHHHhhh-cCCCCCCCCCCceEEEEEEEc--c--------CCeEEEEEEEEeeEecCCeEEecCCCC------------
Q 011910 293 CLFEALDR-IEITPRDPNGPFRMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNKA------------ 349 (475)
Q Consensus 293 ~l~~~l~~-l~~~~~~~~~~~~~~v~~~~~--~--------~G~v~~g~v~~G~l~~gd~v~i~p~~~------------ 349 (475)
.+.|.. ++.|.+..+.||+++|.++|. + .|+|++|+|.+|+|++||.|.++|++.
T Consensus 193 --~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~ 270 (411)
T PRK04000 193 --IEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPI 270 (411)
T ss_pred --HHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccc
Confidence 444443 677777778999999999982 2 577999999999999999999999863
Q ss_pred eEEEEEEEECCccceeeCCCCEEEEEec---cCCccCCCceeEEecCCCCcccccEEEEEEEEeecc-------cccccc
Q 011910 350 QVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFT 419 (475)
Q Consensus 350 ~~~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~-------~~~~i~ 419 (475)
.++|+||+.++.++++|.||++|+++|+ +++..++++||||++++.+++.++.|+|++.+|+.. ...+|+
T Consensus 271 ~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~ 350 (411)
T PRK04000 271 TTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIK 350 (411)
T ss_pred eEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCC
Confidence 5799999999999999999999999996 677788999999999998888899999999996531 136899
Q ss_pred CCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEE
Q 011910 420 AGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVC 467 (475)
Q Consensus 420 ~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~ 467 (475)
.||++++|+|+.+++|+|..|... .......+|.++.+|+++++
T Consensus 351 ~g~~~~l~~~t~~~~~~i~~i~~~----~~~~~l~~p~~~~~g~r~~~ 394 (411)
T PRK04000 351 TGEPLMLNVGTATTVGVVTSARKD----EAEVKLKRPVCAEEGDRVAI 394 (411)
T ss_pred CCCEEEEEEeccEEEEEEEEcCCc----EEEEEECCcEecCCCCEEEE
Confidence 999999999999999999998431 12233589999999999998
No 25
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=1.4e-51 Score=391.52 Aligned_cols=354 Identities=26% Similarity=0.376 Sum_probs=295.1
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchH-----HHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDR-----TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~-----~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
..+||++|++|+|||||++.| ..|.++++ +....+++..++||+|+....++.+......-+- .+....+++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVL--THgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNK-PD~Hg~~Ld 209 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVL--THGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNK-PDPHGHNLD 209 (641)
T ss_pred eEEEEEEecccCCcceeEeee--eecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccC-CCCCCCccc
Confidence 368999999999999999988 67777763 3333456778999999999988877653321111 011112222
Q ss_pred e------CCeeEEEEeCCCCcCcHHHHhhccc--cCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 157 T------ETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 157 ~------~~~~~~liDtPGh~~f~~~~~~~~~--~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
| ..+.++|||..||++|+++++.++. .+|+.+|+|.|+.|+. ++|+||+.++.++.+| ++||++
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-------GmTKEHLgLALaL~VP-VfvVVT 281 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-------GMTKEHLGLALALHVP-VFVVVT 281 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-------eccHHhhhhhhhhcCc-EEEEEE
Confidence 2 3466999999999999999999976 7999999999999975 8999999999999999 889999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCc--------------------ccCCeeEEEeecccccccccccccCCCCC
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPW 288 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~--------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w 288 (475)
|||+++++ .+++..+.+..++++.|+. ....+|||.+|..+|+|+.-
T Consensus 282 KIDMCPAN----iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L--------- 348 (641)
T KOG0463|consen 282 KIDMCPAN----ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL--------- 348 (641)
T ss_pred eeccCcHH----HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH---------
Confidence 99998775 4556666677788876654 24567899999999999874
Q ss_pred CChhhHHHHhhhcCCC-CCCCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC----CeEEEEEEEECCc
Q 011910 289 WNGPCLFEALDRIEIT-PRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDN 361 (475)
Q Consensus 289 ~~g~~l~~~l~~l~~~-~~~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~----~~~~V~si~~~~~ 361 (475)
|..+|+.++.. ..+.+.|..|.|+++| +|+|+|++|+..+|+|+.+|.+.++|.. .+..|+||++.+-
T Consensus 349 -----LkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRM 423 (641)
T KOG0463|consen 349 -----LKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRM 423 (641)
T ss_pred -----HHHHHhhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccc
Confidence 34455555432 2356788999999998 7999999999999999999999999976 5788999999999
Q ss_pred cceeeCCCCEEEEEeccCCccCCCceeEEecCCCCcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEe
Q 011910 362 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVEL 440 (475)
Q Consensus 362 ~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i 440 (475)
+|..+.+||.+.++|+.+.+.++|+|||++++...|.++|.|+|+|.+ |+| ++|.+.||+++|||++||+|+|.++
T Consensus 424 pV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILV---LHHPTTIsprYQAMvHcGSiRQTAtivsM 500 (641)
T KOG0463|consen 424 PVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILV---LHHPTTISPRYQAMVHCGSIRQTATIVSM 500 (641)
T ss_pred cceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEE---EecCCccCcchhheeeeccccceeeeeec
Confidence 999999999999999999999999999999999999999999999999 888 8999999999999999999999998
Q ss_pred eeeccccCCcc------cccCceeeeCCCEEEEE
Q 011910 441 LHQIDLKTKKP------MKKKVLFVKNGAIVVCR 468 (475)
Q Consensus 441 ~~~~~~~~g~~------~~~~p~~l~~g~~~~~~ 468 (475)
.+-.++||++ +.+.|+||++|++.+||
T Consensus 501 -~kdcLRTGDka~V~FrFIkqPEYir~gqrlVFR 533 (641)
T KOG0463|consen 501 -GKDCLRTGDKAKVQFRFIKQPEYIRPGQRLVFR 533 (641)
T ss_pred -ChhhhhcCCcceEEEEEecCcceecCCceEEee
Confidence 4566889974 56899999999999997
No 26
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.5e-49 Score=422.55 Aligned_cols=320 Identities=25% Similarity=0.385 Sum_probs=273.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-CCeeE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 162 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~~ 162 (475)
.|+++||+|||||||+++|. |. .+|..++|+++|+|++.++..+.. ++..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g~-------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---GV-------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---CC-------------------------CCccchhcccCCceEEeeeEEEecCCCcEE
Confidence 58999999999999999982 11 246677889999999999887766 45789
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 242 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~ 242 (475)
+|||||||++|+++|++++..+|+++||||+.+|.+ +||++|+.++..++++++|||+||||+. + ++++
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-------~qT~ehl~il~~lgi~~iIVVlNKiDlv--~--~~~~ 122 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-------AQTREHLAILQLTGNPMLTVALTKADRV--D--EARI 122 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCccC--C--HHHH
Confidence 999999999999999999999999999999999975 6999999999999999788999999993 2 4567
Q ss_pred HHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEEE--
Q 011910 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF-- 320 (475)
Q Consensus 243 ~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~~-- 320 (475)
+.+.+++..+++..++. ..++||+||++|.|+++ |.+.|..++.+....+.||+++|+++|
T Consensus 123 ~~v~~ei~~~l~~~~~~---~~~ii~VSA~tG~gI~~--------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~v 185 (614)
T PRK10512 123 AEVRRQVKAVLREYGFA---EAKLFVTAATEGRGIDA--------------LREHLLQLPEREHAAQHRFRLAIDRAFTV 185 (614)
T ss_pred HHHHHHHHHHHHhcCCC---CCcEEEEeCCCCCCCHH--------------HHHHHHHhhccccCcCCCceEEEEEEecc
Confidence 77788888888877764 56899999999999987 556666666666667889999999999
Q ss_pred ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEecc-CCccCCCceeEEecCCCCccc
Q 011910 321 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSG-IEEEDILSGFVLSSVAKPVAA 399 (475)
Q Consensus 321 ~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~-~~~~~i~~G~vl~~~~~~~~~ 399 (475)
+|.|+|++|+|.+|+|++||+|.+.|.+..++|++|+.++.++++|.||++|+++|+| ++..++++||+|++++ ++.+
T Consensus 186 ~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~-~~~~ 264 (614)
T PRK10512 186 KGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA-PPEP 264 (614)
T ss_pred CCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC-CCcc
Confidence 6899999999999999999999999999999999999999999999999999999997 8888999999999874 4455
Q ss_pred ccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEE
Q 011910 400 VTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 469 (475)
Q Consensus 400 ~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~ 469 (475)
+..+.+ ++.. ..+++.|+++.+|+|+.++.|+|..+...+ .......|.++..||++++|-
T Consensus 265 ~~~~~~---~l~~--~~~l~~~~~~~~~~gt~~~~~~i~~l~~~~----~~l~l~~p~~~~~gdr~ilr~ 325 (614)
T PRK10512 265 FTRVIV---ELQT--HTPLTQWQPLHIHHAASHVTGRVSLLEDNL----AELVLDTPLWLADNDRLVLRD 325 (614)
T ss_pred ceeEEE---EEcC--CccCCCCCEEEEEEcccEEEEEEEEcCCeE----EEEEECCcccccCCCEEEEEe
Confidence 555533 3221 267899999999999999999998883221 233467999999999999975
No 27
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=7.8e-48 Score=408.44 Aligned_cols=322 Identities=26% Similarity=0.383 Sum_probs=272.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++||+|||||||+++|... -+|..++|+.+|+|++..+..+.++++.+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~----------------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI----------------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc----------------------------cCcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 47999999999999999999311 13556678889999999998999999999
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 242 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~ 242 (475)
+|||||||++|..+++.++..+|+++||||+.+|.+ .|+++|+..+..+++|++|||+||||+. + ++.+
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~-------~qT~ehl~il~~lgi~~iIVVlNK~Dlv--~--~~~~ 121 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM-------TQTGEHLAVLDLLGIPHTIVVITKADRV--N--EEEI 121 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCCCC--C--HHHH
Confidence 999999999999999999999999999999999865 6999999999999999999999999994 2 4456
Q ss_pred HHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEEE--
Q 011910 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF-- 320 (475)
Q Consensus 243 ~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~~-- 320 (475)
+.+.+++..+++..++. .+++++|+||++|.|+.++... +..+++.++.+ ..+.||+++|+++|
T Consensus 122 ~~~~~ei~~~l~~~~~~--~~~~ii~vSA~tG~GI~eL~~~----------L~~l~~~~~~~--~~~~p~r~~Id~~f~v 187 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFL--KNAKIFKTSAKTGQGIGELKKE----------LKNLLESLDIK--RIQKPLRMAIDRAFKV 187 (581)
T ss_pred HHHHHHHHHHHHHhCCC--CCCcEEEEeCCCCCCchhHHHH----------HHHHHHhCCCc--CcCCCcEEEEEEEEec
Confidence 66777788888776653 2579999999999999987542 55556555543 25789999999999
Q ss_pred ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCCCCcccc
Q 011910 321 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 400 (475)
Q Consensus 321 ~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~ 400 (475)
+|.|+|++|+|.+|+|++||+|.++|.+..++|++|+.++.+++.|.||++|+++|+|++..++++|++++++..+ .
T Consensus 188 ~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~---~ 264 (581)
T TIGR00475 188 KGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP---K 264 (581)
T ss_pred CCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC---C
Confidence 6899999999999999999999999999999999999999999999999999999999999999999888776432 2
Q ss_pred cEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEE
Q 011910 401 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 469 (475)
Q Consensus 401 ~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~ 469 (475)
..+...+.. ..+++.|+.+.+|+|+.++.|+|..+.. ..+....++|.++..||++++|-
T Consensus 265 ~~~~~~~~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l~~----~~~~l~l~~P~~~~~gd~~i~r~ 324 (581)
T TIGR00475 265 LRVVVKFIA-----EVPLLELQPYHIAHGMSVTTGKISLLDK----GIALLTLDAPLILAKGDKLVLRD 324 (581)
T ss_pred ceEEEEEEc-----CCccCCCCeEEEEEeceEEEEEEEEccC----cEEEEEECCceecCCCCEEEEEe
Confidence 233333222 2468899999999999999999877743 34566678999999999999987
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-46 Score=369.34 Aligned_cols=298 Identities=28% Similarity=0.420 Sum_probs=260.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
.|+..||++||||||+..|- ...+|..++|.+||+|++++++++..+++.+.
T Consensus 2 ii~t~GhidHgkT~L~~alt----------------------------g~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT----------------------------GGVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhc----------------------------ccccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 58999999999999999881 12467888999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~ 243 (475)
|||+|||.+|+.+|+.++...|+|+||||+.+|++ .||.||+..+..+|+++.++|+||+|+. + .++.+
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~-------~qtgEhL~iLdllgi~~giivltk~D~~--d--~~r~e 122 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLM-------AQTGEHLLILDLLGIKNGIIVLTKADRV--D--EARIE 122 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcc-------hhhHHHHHHHHhcCCCceEEEEeccccc--c--HHHHH
Confidence 99999999999999999999999999999999976 7999999999999999999999999994 3 33555
Q ss_pred HHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcC-CCCCCCCCCceEEEEEEE--
Q 011910 244 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE-ITPRDPNGPFRMPIIDKF-- 320 (475)
Q Consensus 244 ~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~-~~~~~~~~~~~~~v~~~~-- 320 (475)
+..+++...+. +. +.+++++|+.+|.||++|. +.|..+. .+.++.+.||+++|+.+|
T Consensus 123 ~~i~~Il~~l~---l~---~~~i~~~s~~~g~GI~~Lk--------------~~l~~L~~~~e~d~~~~fri~IDraFtV 182 (447)
T COG3276 123 QKIKQILADLS---LA---NAKIFKTSAKTGRGIEELK--------------NELIDLLEEIERDEQKPFRIAIDRAFTV 182 (447)
T ss_pred HHHHHHHhhcc---cc---cccccccccccCCCHHHHH--------------HHHHHhhhhhhhccCCceEEEEeeEEEe
Confidence 55444444333 33 6789999999999999953 3333333 456788999999999999
Q ss_pred ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCCCCcccc
Q 011910 321 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 400 (475)
Q Consensus 321 ~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~ 400 (475)
+|.|||++|++.+|++++||++++.|.++.++|||||.+..++++|.||++|+++|+|++..++.||++|++++. .+++
T Consensus 183 KGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~-~~v~ 261 (447)
T COG3276 183 KGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEP-LEVT 261 (447)
T ss_pred ccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCC-CCcc
Confidence 799999999999999999999999999999999999999999999999999999999998899999999999874 4678
Q ss_pred cEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeee
Q 011910 401 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLH 442 (475)
Q Consensus 401 ~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~ 442 (475)
.+|.+.+.|... ...++..+....+|.|..+.+|++.-+..
T Consensus 262 ~~~~~~~~i~~~-~~~~l~~~~~~hi~~g~~~~~~~i~~l~~ 302 (447)
T COG3276 262 TRLIVELEIDPL-FKKTLKQGQPVHIHVGLRSVTGRIVPLEK 302 (447)
T ss_pred eEEEEEEEeccc-cccccCCCceEEEEEeccccceEeeeccc
Confidence 889999888442 23688999999999999999999987754
No 29
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-45 Score=348.37 Aligned_cols=356 Identities=22% Similarity=0.339 Sum_probs=296.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchH------HHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeee-e
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-A 153 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~-~ 153 (475)
-..++|++|..|+|||||++.| ..|.++++ +++++.| ...+|++|+....++.+...+.--+.....+. .
T Consensus 166 ievRvAVlGg~D~GKSTLlGVL--TQgeLDnG~GrARln~FRh~H-EiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVL--TQGELDNGNGRARLNIFRHPH-EIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred eEEEEEEecCcccCcceeeeee--ecccccCCCCeeeeehhcchh-hhccCcccccchhcccccccccccchhhcccHHH
Confidence 3468999999999999999988 66777764 3555544 45789999988888877664332222111111 1
Q ss_pred EEeeCCeeEEEEeCCCCcCcHHHHhhccc--cCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 154 HFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 154 ~~~~~~~~~~liDtPGh~~f~~~~~~~~~--~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
..+..++.++|||.+||.+|.++++.++. .+|+|+|||+|..|+. ..|+||+.++.++++| |+|+++|||
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~-------~tTrEHLgl~~AL~iP-fFvlvtK~D 314 (591)
T KOG1143|consen 243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT-------WTTREHLGLIAALNIP-FFVLVTKMD 314 (591)
T ss_pred HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc-------cccHHHHHHHHHhCCC-eEEEEEeec
Confidence 12345678999999999999999999987 5899999999999975 6899999999999999 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCc--------------------ccCCeeEEEeecccccccccccccCCCCCCCh
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 291 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~--------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g 291 (475)
+. +...++.+.+++..++++.|+. ...-+|++.+|+.+|+|+.-
T Consensus 315 l~----~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l------------ 378 (591)
T KOG1143|consen 315 LV----DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL------------ 378 (591)
T ss_pred cc----cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH------------
Confidence 94 2456778888999999988874 12346899999999999874
Q ss_pred hhHHHHhhhcCCCCC------CCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC----CeEEEEEEEEC
Q 011910 292 PCLFEALDRIEITPR------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCD 359 (475)
Q Consensus 292 ~~l~~~l~~l~~~~~------~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~----~~~~V~si~~~ 359 (475)
|..+|+.+++... -...|..|.|.+.| +.+|+|+.|.+.+|.++.|+.+.++|.. .+++|.||+++
T Consensus 379 --l~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rn 456 (591)
T KOG1143|consen 379 --LRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRN 456 (591)
T ss_pred --HHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeecc
Confidence 3445555544221 12467789999998 6899999999999999999999999986 57899999999
Q ss_pred CccceeeCCCCEEEEEeccCCccCCCceeEEecCCCCcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEE
Q 011910 360 DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIV 438 (475)
Q Consensus 360 ~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~ 438 (475)
+.++..+.|||.+.+.|...+...+|+||||..++.+|+.|..|+|.+.+ |-| +.|..|||.++|+|+++++|.|.
T Consensus 457 r~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~l---LfHaT~i~~GFQ~TVhiGsvrqTAvi~ 533 (591)
T KOG1143|consen 457 RQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLL---LFHATYICEGFQATVHIGSVRQTAVIT 533 (591)
T ss_pred ccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehh---hhhhHhheecceEEEEEcceeeeeeee
Confidence 99999999999999999877777899999999999999999999999999 667 89999999999999999999999
Q ss_pred EeeeeccccCCcc------cccCceeeeCCCEEEEE
Q 011910 439 ELLHQIDLKTKKP------MKKKVLFVKNGAIVVCR 468 (475)
Q Consensus 439 ~i~~~~~~~~g~~------~~~~p~~l~~g~~~~~~ 468 (475)
.|...-.++||++ +.++|+|+++|.++++|
T Consensus 534 ~I~~~d~lrtg~~AvV~f~F~~hPEyir~G~~ilfR 569 (591)
T KOG1143|consen 534 HIDDADCLRTGKWAVVKFCFAYHPEYIREGSPILFR 569 (591)
T ss_pred eecccccccCCceEEEEEEecCCchhccCCCeeeee
Confidence 9999888999986 46899999999999998
No 30
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=8.8e-41 Score=353.76 Aligned_cols=279 Identities=24% Similarity=0.342 Sum_probs=231.6
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
++||+|+||+|||||||+++|++.+|.+..... .-.+++|....|++||+|+......+.+.+++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~---------------v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~k 65 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEA---------------VAERVMDSNDLERERGITILAKNTAIRYNGTK 65 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccc---------------ceeecccCchHHHhCCccEEeeeEEEEECCEE
Confidence 479999999999999999999999887764320 01358999999999999999999999999999
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHH
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 241 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~ 241 (475)
++|||||||.+|..++.++++.+|++||||||.+|.+ .||++++..+...++| +|||+||||++.+ +
T Consensus 66 inlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~-------~qT~~~l~~a~~~~ip-~IVviNKiD~~~a-----~ 132 (594)
T TIGR01394 66 INIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPSA-----R 132 (594)
T ss_pred EEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------HHHHHHHHHHHHCCCC-EEEEEECCCCCCc-----C
Confidence 9999999999999999999999999999999999865 6999999999999999 7899999999543 3
Q ss_pred HHHHHhhhhhHhhhhcCcc-cCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEEE
Q 011910 242 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 320 (475)
Q Consensus 242 ~~~i~~~l~~~l~~~~~~~-~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~~ 320 (475)
+.++.+++..++..++... ...+|++++||++|.+...+.. ..+.-.+.|..+++.+|.|..+.+.||++.|.+++
T Consensus 133 ~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~---~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 133 PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD---PSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLD 209 (594)
T ss_pred HHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc---cccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEE
Confidence 5566677777776665431 1257899999999987654321 11222233556778888888788899999999988
Q ss_pred --ccCCeEEEEEEEEeeEecCCeEEecCCCC---eEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCceeEEe
Q 011910 321 --KDMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (475)
Q Consensus 321 --~~~G~v~~g~v~~G~l~~gd~v~i~p~~~---~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (475)
+..|++++|||.+|+|++||.|.+.|.+. ..+|++|+.+ +.+++.|.|||+|+++ ++ .++.+|++|+
T Consensus 210 ~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl--~~i~~Gdtl~ 285 (594)
T TIGR01394 210 YDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GL--EDINIGETIA 285 (594)
T ss_pred eeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CC--cccCCCCEEe
Confidence 46899999999999999999999998742 5789999975 6789999999999964 65 4689999999
Q ss_pred cCCC
Q 011910 392 SVAK 395 (475)
Q Consensus 392 ~~~~ 395 (475)
+++.
T Consensus 286 ~~~~ 289 (594)
T TIGR01394 286 DPEV 289 (594)
T ss_pred CCCc
Confidence 9874
No 31
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-40 Score=308.62 Aligned_cols=330 Identities=25% Similarity=0.368 Sum_probs=273.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
++..||+++||+|||||||+.+| +|. .+|.+.+|.+||+||+.++.....-
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Al---sGv-------------------------wT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKAL---SGV-------------------------WTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehh---hce-------------------------eeechhHHHhcCcEEEeccccCceEe
Confidence 56789999999999999999988 221 3678889999999999987542210
Q ss_pred -------------------------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHH
Q 011910 159 -------------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 213 (475)
Q Consensus 159 -------------------------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~ 213 (475)
-+++.|+|+|||+-.+.+|++|++..|+|||||+|++.. .++||+||+.
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc------PQPQT~EHl~ 133 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC------PQPQTREHLM 133 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC------CCCchHHHHH
Confidence 145899999999999999999999999999999999987 3799999999
Q ss_pred HHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhh
Q 011910 214 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 293 (475)
Q Consensus 214 ~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~ 293 (475)
.+.-.|++++|+|-||+|+.+ +++..+-.+++++|++..-- .+.|+||+||..+.||+.|
T Consensus 134 AleIigik~iiIvQNKIDlV~----~E~AlE~y~qIk~FvkGt~A---e~aPIIPiSA~~~~NIDal------------- 193 (415)
T COG5257 134 ALEIIGIKNIIIVQNKIDLVS----RERALENYEQIKEFVKGTVA---ENAPIIPISAQHKANIDAL------------- 193 (415)
T ss_pred HHhhhccceEEEEecccceec----HHHHHHHHHHHHHHhccccc---CCCceeeehhhhccCHHHH-------------
Confidence 999999999999999999943 44444555556666664322 3789999999999999974
Q ss_pred HHHH-hhhcCCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEEEeeEecCCeEEecCCC------------Ce
Q 011910 294 LFEA-LDRIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNK------------AQ 350 (475)
Q Consensus 294 l~~~-l~~l~~~~~~~~~~~~~~v~~~~~----------~~G~v~~g~v~~G~l~~gd~v~i~p~~------------~~ 350 (475)
.++ -+.+|.|.++.++|.+|.|..+|. -.|-|+.|.+.+|.|++||+|.+.|+- ..
T Consensus 194 -~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~ 272 (415)
T COG5257 194 -IEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPIT 272 (415)
T ss_pred -HHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEee
Confidence 444 456999999999999999999992 268899999999999999999999974 24
Q ss_pred EEEEEEEECCccceeeCCCCEEEEEec---cCCccCCCceeEEecCCCCcccccEEEEEEEEeeccc------c-ccccC
Q 011910 351 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD------N-AIFTA 420 (475)
Q Consensus 351 ~~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~~------~-~~i~~ 420 (475)
.+|.||+..+..+++|.||..+++..+ .+.+.|-..|.|+..++..|+..++|+.+...|+..- + .+|+.
T Consensus 273 T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~ 352 (415)
T COG5257 273 TEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKT 352 (415)
T ss_pred EEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccC
Confidence 689999999999999999999999654 3455677789999999998999999999999965211 2 58999
Q ss_pred CcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEE
Q 011910 421 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 468 (475)
Q Consensus 421 g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~ 468 (475)
|-..++.+|+...-+.|++... ...+...++|-|...|+++.+-
T Consensus 353 ~E~Lml~VGtatT~GvV~~~k~----d~~ev~Lk~Pvcae~g~rvais 396 (415)
T COG5257 353 NEVLMLNVGTATTVGVVTSAKK----DEIEVKLKRPVCAEIGERVAIS 396 (415)
T ss_pred CCeEEEEeecceeEEEEEEecC----ceEEEEeccceecCCCCEEEEE
Confidence 9999999999999998888743 1234456799999999987653
No 32
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-40 Score=328.38 Aligned_cols=267 Identities=23% Similarity=0.315 Sum_probs=227.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+++|++|+.|+|||||||.++||..+|.++....+ ..++|..+.||+||||++....++.+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q----------------~q~LDkl~vERERGITIkaQtasify~~ 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQ----------------EQVLDKLQVERERGITIKAQTASIFYKD 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCch----------------hhhhhhhhhhhhcCcEEEeeeeEEEEEc
Confidence 788999999999999999999999999988875433 3489999999999999999998888877
Q ss_pred ---eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 160 ---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ---~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
+.+|+||||||.||..++.+.+..||+|||||||.+|+. .||...+.++...|+. +|.|+||+|++.++
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvq-------AQT~anf~lAfe~~L~-iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQ-------AQTVANFYLAFEAGLA-IIPVLNKIDLPSAD 193 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCch-------HHHHHHHHHHHHcCCe-EEEeeeccCCCCCC
Confidence 999999999999999999999999999999999999974 7999999999999998 99999999998775
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEE
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v 316 (475)
.+.+.+++...+... ..+++.+||++|.|+.++ |..+++.+|+|....++|||+.+
T Consensus 194 -----pe~V~~q~~~lF~~~------~~~~i~vSAK~G~~v~~l-------------L~AII~rVPpP~~~~d~plr~Li 249 (650)
T KOG0462|consen 194 -----PERVENQLFELFDIP------PAEVIYVSAKTGLNVEEL-------------LEAIIRRVPPPKGIRDAPLRMLI 249 (650)
T ss_pred -----HHHHHHHHHHHhcCC------ccceEEEEeccCccHHHH-------------HHHHHhhCCCCCCCCCcchHHHh
Confidence 345666666655432 347999999999999985 66789999999999999999999
Q ss_pred EEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC---CccceeeCCCCEEEEEeccCCccCCCceeEEe
Q 011910 317 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (475)
Q Consensus 317 ~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (475)
++++. -+|.++.++|..|.+++||+|....++....|+.+... ..++....|||...|...-=+..+.+.|++++
T Consensus 250 fds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~ 329 (650)
T KOG0462|consen 250 FDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIA 329 (650)
T ss_pred hhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceee
Confidence 99984 47999999999999999999999999887777777665 34555666666655532211245688999998
Q ss_pred cCC
Q 011910 392 SVA 394 (475)
Q Consensus 392 ~~~ 394 (475)
+..
T Consensus 330 ~~~ 332 (650)
T KOG0462|consen 330 HKS 332 (650)
T ss_pred ecc
Confidence 876
No 33
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-39 Score=314.94 Aligned_cols=281 Identities=23% Similarity=0.323 Sum_probs=234.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...+||||+.|+|||||||++.||.++|.+..+.- .-.++||....|++|||||-.....+.|++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~---------------v~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREE---------------VAERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccc---------------hhhhhcCccchhhhcCcEEEeccceeecCC
Confidence 46789999999999999999999999998876431 124589999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
++|||+|||||.+|-.++.+.++..|+++|+|||.+|.+ +||+..++.+.++|++ .||||||+|++.+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-------PQTrFVlkKAl~~gL~-PIVVvNKiDrp~A---- 135 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALALGLK-PIVVINKIDRPDA---- 135 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-------CchhhhHHHHHHcCCC-cEEEEeCCCCCCC----
Confidence 999999999999999999999999999999999999987 6999999999999999 6789999999765
Q ss_pred HHHHHHHhhhhhHhhhhcCcc-cCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEE
Q 011910 240 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~-~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~ 318 (475)
+-+++.+++..++..++-+. .-++|++..||+.|.--.++.+.. --..|-+..+++.+|.|..+.+.||++.|..
T Consensus 136 -rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~---~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~ 211 (603)
T COG1217 136 -RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEA---DDMAPLFETILDHVPAPKGDLDEPLQMQVTQ 211 (603)
T ss_pred -CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccc---cchhHHHHHHHHhCCCCCCCCCCCeEEEEEe
Confidence 45567777777777766441 246899999999997444332210 0112334557889999999999999998876
Q ss_pred EE--ccCCeEEEEEEEEeeEecCCeEEecCCC---CeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCceeE
Q 011910 319 KF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (475)
Q Consensus 319 ~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (475)
.- .-.|++..|||.+|++++||.|.+...+ ...+|..+..+ +.++++|.|||+|+ +.|+. ++..|++
T Consensus 212 Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVa--iaG~~--~~~igdT 287 (603)
T COG1217 212 LDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVA--IAGLE--DINIGDT 287 (603)
T ss_pred eccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEE--EcCcc--ccccccc
Confidence 53 3579999999999999999999987655 45678888765 67899999999999 56774 4889999
Q ss_pred EecCCC
Q 011910 390 LSSVAK 395 (475)
Q Consensus 390 l~~~~~ 395 (475)
+|+++.
T Consensus 288 i~d~~~ 293 (603)
T COG1217 288 ICDPDN 293 (603)
T ss_pred ccCCCC
Confidence 999874
No 34
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-38 Score=311.52 Aligned_cols=267 Identities=23% Similarity=0.380 Sum_probs=232.2
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
..+.++|++|+.|.|||||||.++|+..+|.++.+.+. +.++|+...||+||+||+.....+.+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~----------------~Q~LDsMdiERERGITIKaq~v~l~Y 68 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR----------------AQVLDSMDIERERGITIKAQAVRLNY 68 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH----------------HHhhhhhhhHhhcCceEEeeEEEEEE
Confidence 35678999999999999999999999999999998765 34899999999999999998887665
Q ss_pred C-----CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 158 E-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~-----~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
. .+.++|||||||.+|..++.++++.|.+|+|||||+.|+ +.||....+++...++. +|-|+||+|+
T Consensus 69 k~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGv-------eAQTlAN~YlAle~~Le-IiPViNKIDL 140 (603)
T COG0481 69 KAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDL 140 (603)
T ss_pred EeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccch-------HHHHHHHHHHHHHcCcE-EEEeeecccC
Confidence 3 488999999999999999999999999999999999996 37999999999999998 9999999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPF 312 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~ 312 (475)
+.++ .+.++.++...+ |++ .-..+.+||++|.|++++ |..+++.+|+|..+.++|+
T Consensus 141 P~Ad-----pervk~eIe~~i---Gid---~~dav~~SAKtG~gI~~i-------------Le~Iv~~iP~P~g~~~~pL 196 (603)
T COG0481 141 PAAD-----PERVKQEIEDII---GID---ASDAVLVSAKTGIGIEDV-------------LEAIVEKIPPPKGDPDAPL 196 (603)
T ss_pred CCCC-----HHHHHHHHHHHh---CCC---cchheeEecccCCCHHHH-------------HHHHHhhCCCCCCCCCCcc
Confidence 8775 334555665543 454 346899999999999996 6678899999999999999
Q ss_pred eEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC---CccceeeCCCCEEEE--EeccCCccCCC
Q 011910 313 RMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRI--RLSGIEEEDIL 385 (475)
Q Consensus 313 ~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i--~l~~~~~~~i~ 385 (475)
+..+.++|- -.|.++..||..|+|++||+|.++.++....|..+..+ ..+.....||+...+ +++. ..+.+
T Consensus 197 kALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeVG~~~a~iK~--v~d~~ 274 (603)
T COG0481 197 KALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEVGYIIAGIKD--VRDAR 274 (603)
T ss_pred eEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCceeEEEEeeee--cccCc
Confidence 999999984 47999999999999999999999999999999998876 467788999998887 3443 36799
Q ss_pred ceeEEecCC
Q 011910 386 SGFVLSSVA 394 (475)
Q Consensus 386 ~G~vl~~~~ 394 (475)
.||++...+
T Consensus 275 VGDTiT~~~ 283 (603)
T COG0481 275 VGDTITLAS 283 (603)
T ss_pred ccceEeccC
Confidence 999999654
No 35
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=1.3e-38 Score=300.33 Aligned_cols=218 Identities=64% Similarity=1.049 Sum_probs=196.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
||+++||+|||||||+++|++.+|.+....+.++.+.+...|.+++.|++++|....|++||+|++.....+.+.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 69999999999999999999999999988888888888888998999999999999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~ 243 (475)
|+|||||.+|...++.+++.+|++|+|||+..+.++.+|....++.+++..+..++++++|+|+||||+..++|++..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999999866665555678999999888888777999999999965567788899
Q ss_pred HHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCC
Q 011910 244 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 304 (475)
Q Consensus 244 ~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~ 304 (475)
.+.+++..+++..++.. ..++++|+||++|.|+.+... .++||.|+||++.|+.+.++
T Consensus 161 ~i~~~l~~~l~~~~~~~-~~~~ii~iSA~tg~gi~~~~~--~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 161 EIKKELSPFLKKVGYNP-KDVPFIPISGLTGDNLIEKSE--NMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHcCCCc-CCceEEEeecCcCCCCCcCCC--CCCCccCCcHHHHHhCCCCC
Confidence 99999998898887752 357999999999999997654 59999999999999988654
No 36
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=4.7e-38 Score=332.42 Aligned_cols=279 Identities=23% Similarity=0.330 Sum_probs=228.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
..++||+|+||+|||||||+++|++.+|.+..... .-.+++|....|+++|+|+......+.+.+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~---------------~~~~v~D~~~~E~erGiTi~~~~~~i~~~~ 67 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE---------------TQERVMDSNDLEKERGITILAKNTAIKWND 67 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccc---------------cceeeeccccccccCceEEEEEEEEEecCC
Confidence 46789999999999999999999988887654210 013689999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
+.++|||||||.+|...+..+++.+|++|||||+.+|.. .|++.++..+..+++| +|||+||||++.+
T Consensus 68 ~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~-------~qt~~~l~~a~~~gip-~IVviNKiD~~~a---- 135 (607)
T PRK10218 68 YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-------PQTRFVTKKAFAYGLK-PIVVINKVDRPGA---- 135 (607)
T ss_pred EEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCcc-------HHHHHHHHHHHHcCCC-EEEEEECcCCCCC----
Confidence 999999999999999999999999999999999999864 6999999999999999 6889999999544
Q ss_pred HHHHHHHhhhhhHhhhhcCcc-cCCeeEEEeeccccccccccccc--CCCCCCChhhHHHHhhhcCCCCCCCCCCceEEE
Q 011910 240 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDK--SLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~-~~~~~iipiSa~~g~gi~~l~~~--~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v 316 (475)
++..+.+++..++..++... ..++|++++||++|.|..++... ...+| |..+++.+|.|.++.++||++.|
T Consensus 136 -~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~L-----ld~Ii~~iP~P~~~~~~Pl~~~V 209 (607)
T PRK10218 136 -RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPL-----YQAIVDHVPAPDVDLDGPFQMQI 209 (607)
T ss_pred -chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHH-----HHHHHHhCCCCCCCCCCCeEEEE
Confidence 44556666666665544331 13578999999999975443210 01222 44577889988888889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCeEEecCC-CC--eEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCce
Q 011910 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPN-KA--QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 387 (475)
Q Consensus 317 ~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~-~~--~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (475)
++++ +..|++++|||++|+|+.||.|.+.+. +. ..+|.+|+.. +.++++|.|||+|++ .|+ .++..|
T Consensus 210 ~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~G 285 (607)
T PRK10218 210 SQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TGL--GELNIS 285 (607)
T ss_pred EeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEE--ECc--cccccC
Confidence 9986 468999999999999999999999876 33 5788888765 678999999999995 555 458899
Q ss_pred eEEecCCC
Q 011910 388 FVLSSVAK 395 (475)
Q Consensus 388 ~vl~~~~~ 395 (475)
++|++++.
T Consensus 286 dTl~~~~~ 293 (607)
T PRK10218 286 DTVCDTQN 293 (607)
T ss_pred cEEecCCC
Confidence 99998764
No 37
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1e-37 Score=331.69 Aligned_cols=268 Identities=24% Similarity=0.391 Sum_probs=221.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
+.++||+|+||+|||||||+++|++.+|.+..+.+ ..+++|+.+.|++||+|++.....+.|.
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~----------------~~~~lD~~~~ErerGiTi~~~~v~~~~~~ 68 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM----------------KAQVLDSMDLERERGITIKAQAVRLNYKA 68 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc----------------ccccccCchHHhhcCCcccccEEEEEEEc
Confidence 46789999999999999999999999988765321 2568999999999999999988777664
Q ss_pred ----CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 159 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ----~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
.+.++|||||||.+|...+.++++.||++|||||+..|.. .++.+++..+...++| +|+|+||+|+..
T Consensus 69 ~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~-------~qt~~~~~~~~~~~lp-iIvViNKiDl~~ 140 (600)
T PRK05433 69 KDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-------AQTLANVYLALENDLE-IIPVLNKIDLPA 140 (600)
T ss_pred cCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEEEECCCCCc
Confidence 5789999999999999999999999999999999999863 6899999888888999 899999999954
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceE
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 314 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~ 314 (475)
.+ +..+.+++... +++. ...++++||++|.|+.++ |..+++.+|.|..+.+.||++
T Consensus 141 a~-----~~~v~~ei~~~---lg~~---~~~vi~iSAktG~GI~~L-------------l~~I~~~lp~P~~~~~~pl~~ 196 (600)
T PRK05433 141 AD-----PERVKQEIEDV---IGID---ASDAVLVSAKTGIGIEEV-------------LEAIVERIPPPKGDPDAPLKA 196 (600)
T ss_pred cc-----HHHHHHHHHHH---hCCC---cceEEEEecCCCCCHHHH-------------HHHHHHhCccccCCCCCCceE
Confidence 32 22333334333 2332 235899999999999985 334556788888888899999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC---CccceeeCCCCEEEEEeccCC-ccCCCcee
Q 011910 315 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILSGF 388 (475)
Q Consensus 315 ~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~ 388 (475)
.|.+++ +..|++++|||.+|+|+.||+|.+.|.+...+|.+|..+ ..+++.+.|||++.+ +.++. ..++++||
T Consensus 197 ~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg~i-~~~ik~~~~~~~Gd 275 (600)
T PRK05433 197 LIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEVGYI-IAGIKDVRDARVGD 275 (600)
T ss_pred EEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCEEEE-ecccccccccCCCC
Confidence 999998 568999999999999999999999999999999999875 578999999996554 45553 35799999
Q ss_pred EEecCCCC
Q 011910 389 VLSSVAKP 396 (475)
Q Consensus 389 vl~~~~~~ 396 (475)
+|++.+.+
T Consensus 276 tl~~~~~~ 283 (600)
T PRK05433 276 TITLAKNP 283 (600)
T ss_pred EEECCCCc
Confidence 99987654
No 38
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.7e-37 Score=329.55 Aligned_cols=267 Identities=22% Similarity=0.376 Sum_probs=219.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 158 (475)
.++||+|+||+|||||||+++|++.+|.++.+. ...+++|+.+.|+++|+|++.....+.+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~----------------~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE----------------MREQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc----------------ccccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 578999999999999999999999888776432 12468999999999999999988777653
Q ss_pred ---CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCC
Q 011910 159 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 159 ---~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~ 235 (475)
.+.++|||||||.+|...+.++++.||++|||+|+.+|.. .++.+++..+...++| +|+|+||+|+...
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~-------~qt~~~~~~~~~~~ip-iIiViNKiDl~~~ 137 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIE-------AQTLANVYLALENDLE-IIPVINKIDLPSA 137 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcCCCcc
Confidence 2789999999999999999999999999999999999864 5888888888888998 8999999999433
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEE
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 315 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~ 315 (475)
+ .+.+.+++... +++. ...++++||++|.|+.++ |..+++.+|.|..+.+.||++.
T Consensus 138 ~-----~~~~~~el~~~---lg~~---~~~vi~vSAktG~GI~~L-------------le~I~~~lp~p~~~~~~pl~~~ 193 (595)
T TIGR01393 138 D-----PERVKKEIEEV---IGLD---ASEAILASAKTGIGIEEI-------------LEAIVKRVPPPKGDPDAPLKAL 193 (595)
T ss_pred C-----HHHHHHHHHHH---hCCC---cceEEEeeccCCCCHHHH-------------HHHHHHhCCCCCCCCCCCeEEE
Confidence 2 12233333332 2332 125899999999999985 4445567888888888999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECC---ccceeeCCCCEEEEEeccCC-ccCCCceeE
Q 011910 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD---NRVRHAGPGENLRIRLSGIE-EEDILSGFV 389 (475)
Q Consensus 316 v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~---~~v~~a~aG~~v~i~l~~~~-~~~i~~G~v 389 (475)
|.+++ ++.|++++|||.+|+|+.||+|.+.|.+...+|.+|..++ .+++.+.|||+ ++.+.|+. ..++++||+
T Consensus 194 V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdI-g~i~~~~~~~~~~~~Gdt 272 (595)
T TIGR01393 194 IFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGEV-GYIIAGIKDVSDVRVGDT 272 (595)
T ss_pred EEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCCE-EEEeccccccCccCCCCE
Confidence 99998 5689999999999999999999999999999999998775 67899999994 54456653 367999999
Q ss_pred EecCCCC
Q 011910 390 LSSVAKP 396 (475)
Q Consensus 390 l~~~~~~ 396 (475)
|++.+.+
T Consensus 273 l~~~~~~ 279 (595)
T TIGR01393 273 ITHVKNP 279 (595)
T ss_pred EECCCCc
Confidence 9987654
No 39
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-39 Score=312.53 Aligned_cols=330 Identities=37% Similarity=0.633 Sum_probs=297.2
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.+.++||+++||+++||||+.+ +.+|.++.+.+.++++++...|+.+|.|+|++|....|+++|++|+...+.+.+.
T Consensus 4 ~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~ 80 (391)
T KOG0052|consen 4 EKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 80 (391)
T ss_pred cccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccce
Confidence 4677899999999999999997 7889999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
.+.++++|.|||.+|.++|+.+.++||+++++|.+.-|.||+++...+|+++|..++..+|+.++++.+||||.....|+
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s 160 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 160 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEE
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~ 318 (475)
+.+++++.+....+.++.++++.. . ..+
T Consensus 161 ~~r~~ei~k~~~~~~~~~g~n~~~-------------------------------~---------------------~~~ 188 (391)
T KOG0052|consen 161 EARYEEIKKEVSSYIKKIGYNPAA-------------------------------V---------------------LQD 188 (391)
T ss_pred ccchhhhheeeeeeeeccccCChh-------------------------------h---------------------hcc
Confidence 999999988777766666554210 0 111
Q ss_pred EEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCC-C
Q 011910 319 KFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA-K 395 (475)
Q Consensus 319 ~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~-~ 395 (475)
+++ +.| +..|.++.++.+...|.....++++..+++..-.++.+|+.++++..+++..++++|+++.+.. .
T Consensus 189 ~~~~~g~~------~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~ 262 (391)
T KOG0052|consen 189 VYKIGGIG------VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKND 262 (391)
T ss_pred ceeeccee------eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccC
Confidence 121 122 7788899999999988888889999999988888999999999999999999999999999877 4
Q ss_pred CcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 396 PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 396 ~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
|+.....|.|++++ ++| ..|..||.|++.||+++++|+|..|..++|.++|......|++++.|+.+++...++
T Consensus 263 p~~~~~g~t~qvii---lnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~ 337 (391)
T KOG0052|consen 263 PPVEAAGFTAQVII---LNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPG 337 (391)
T ss_pred CccccccceeeEEE---ecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccC
Confidence 66677899999999 777 789999999999999999999999999999999999999999999999999877764
No 40
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=8.4e-37 Score=285.68 Aligned_cols=207 Identities=36% Similarity=0.628 Sum_probs=185.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+|+||+|||||||+++|++.+|.+..+.+.+++++....++.++.+.+++|..+.|+++|+|++.....+.+.+..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999999999999987777777777777888888999999999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~ 243 (475)
|+|||||.+|...+..++..+|++|+|||+..|.. .++++++.++...+.|++|+|+||||+ .++.++.+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~--~~~~~~~~~ 151 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-------EQTRRHSYILSLLGIRHVVVAVNKMDL--VDYSEEVFE 151 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCCcEEEEEEchhc--ccCCHHHHH
Confidence 99999999999999999999999999999998854 578888888888888778889999999 556667788
Q ss_pred HHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCC
Q 011910 244 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 304 (475)
Q Consensus 244 ~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~ 304 (475)
.+..+++.+++.+++. ..+++|+||++|.|+.+... .++||.|+||+++|+.+++|
T Consensus 152 ~i~~~~~~~~~~~~~~---~~~ii~iSA~~g~ni~~~~~--~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 152 EIVADYLAFAAKLGIE---DITFIPISALDGDNVVSRSE--NMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHHcCCC---CceEEEEeCCCCCCCccCCC--CCCCCCCCcHHHHHhcCCCC
Confidence 8888888888888764 46799999999999998764 59999999999999999876
No 41
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-36 Score=286.07 Aligned_cols=307 Identities=25% Similarity=0.368 Sum_probs=248.3
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC---
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--- 158 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--- 158 (475)
..|++++||+|||||||..+|.... .....|..+..++||+|.+.++..+...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~------------------------STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa 62 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELG------------------------STAAFDKHPQSTERGITLDLGFSTMTVLSPA 62 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhc------------------------cchhhccCCcccccceeEeecceeeeccccc
Confidence 3799999999999999999983211 1224677888889999999998776543
Q ss_pred ------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 159 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.-+++++|+|||...+++.+.|+..-|.++||||+..|. +.||.|++.+...+--+ +|||+||+|.
T Consensus 63 rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~-------QtQtAEcLiig~~~c~k-lvvvinkid~ 134 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK-------QTQTAECLIIGELLCKK-LVVVINKIDV 134 (522)
T ss_pred ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc-------ccccchhhhhhhhhccc-eEEEEecccc
Confidence 245799999999999999999999999999999999995 57999999887665544 8999999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccc----cccccccccCCCCCCChhhHHHHhhh-cCCCCCC
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG----LNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRD 307 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g----~gi~~l~~~~~~~w~~g~~l~~~l~~-l~~~~~~ 307 (475)
...+..+..+++....+++-|+..+|. .+.||+++||..| +++.+ |.++|.. +-.|.++
T Consensus 135 lpE~qr~ski~k~~kk~~KtLe~t~f~--g~~PI~~vsa~~G~~~~~~i~e--------------L~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 135 LPENQRASKIEKSAKKVRKTLESTGFD--GNSPIVEVSAADGYFKEEMIQE--------------LKEALESRIFEPKRD 198 (522)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhcCcC--CCCceeEEecCCCccchhHHHH--------------HHHHHHHhhcCCCcC
Confidence 877777788889999999999999986 5789999999999 45554 5555554 6778999
Q ss_pred CCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCC
Q 011910 308 PNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 385 (475)
Q Consensus 308 ~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~ 385 (475)
...||.|.|+++| +|.|+|.+|+|.+|.|+.|+.|.+...+..-+|+|+++++.+|.+|.+|+++++.+...+..-+.
T Consensus 199 ~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klle 278 (522)
T KOG0461|consen 199 EEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLE 278 (522)
T ss_pred CCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHh
Confidence 9999999999998 79999999999999999999999988888889999999999999999999999999988887788
Q ss_pred ceeEEecCCCCcccccEEEEEEEEeecccc--ccccCCcEEEEEEeeeeEEEEEEEee
Q 011910 386 SGFVLSSVAKPVAAVTEFIAQLQILELLDN--AIFTAGYKAVLHIHAVVEECEIVELL 441 (475)
Q Consensus 386 ~G~vl~~~~~~~~~~~~f~A~i~~~~~~~~--~~i~~g~~~~~~~~~~~~~~~i~~i~ 441 (475)
||-+ +.++ .-....|.+..++.+.. .+|..-.+..+-+|.-.+.+.++-+.
T Consensus 279 Rgi~-~~pg----~Lk~~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff~ 331 (522)
T KOG0461|consen 279 RGIC-GPPG----TLKSTKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFFK 331 (522)
T ss_pred cccc-CCCc----ccceeeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEee
Confidence 8844 3333 23334444444332332 56655556555566666667666554
No 42
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.5e-34 Score=266.73 Aligned_cols=191 Identities=32% Similarity=0.487 Sum_probs=164.2
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
++||+++||+|||||||+++|++... ..|+..+...+.+|..+.|++||+|++.....+.+.+++
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~ 66 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRH 66 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCeE
Confidence 57999999999999999999987542 122222222357899999999999999999999999999
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHH
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 241 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~ 241 (475)
++|+|||||.+|..++.+++..+|++++|||+..|.. .++++++.++..+++|++|+|+||||+. + .++.
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~~--~-~~~~ 136 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-------PQTREHLLLARQVGVPYIVVFLNKADMV--D-DEEL 136 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCcEEEEEeCCCCC--C-cHHH
Confidence 9999999999999999999999999999999999864 6999999999999998788999999994 2 4556
Q ss_pred HHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCC-hhhHHHHhhhcCC
Q 011910 242 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDRIEI 303 (475)
Q Consensus 242 ~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~-g~~l~~~l~~l~~ 303 (475)
++.+.+++..+|+.+|++. .+++++|+||++|.|+.+ .++||+ +++|+++|+++.+
T Consensus 137 ~~~~~~~i~~~l~~~g~~~-~~v~iipiSa~~g~n~~~-----~~~w~~~~~~l~~~l~~~~~ 193 (195)
T cd01884 137 LELVEMEVRELLSKYGFDG-DNTPIVRGSALKALEGDD-----PNKWVKKILELLDALDSYIP 193 (195)
T ss_pred HHHHHHHHHHHHHHhcccc-cCCeEEEeeCccccCCCC-----CCcchhcHhHHHHHHHhCCC
Confidence 7778889999999999863 478999999999999765 379997 7999999987643
No 43
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-33 Score=298.51 Aligned_cols=273 Identities=23% Similarity=0.286 Sum_probs=213.0
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+.+||+|+||+|||||||+++||+.+|.+... |. -..++.+||+.+.|++||+||..+..++.|.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~------------G~-v~~g~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKI------------GE-VHDGAATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCC------------cc-ccCCCccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 5688999999999999999999999999987641 11 1123568999999999999999999999999
Q ss_pred C-eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 159 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 159 ~-~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
+ ++|||||||||.||..++.++++.+|+||+||||.+|+. .||+..++++...++| .|++|||||+..+++
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~-------~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~~ 145 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVE-------PQTETVWRQADKYGVP-RILFVNKMDRLGADF 145 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCee-------ecHHHHHHHHhhcCCC-eEEEEECccccccCh
Confidence 6 999999999999999999999999999999999999985 7999999999999999 678999999976653
Q ss_pred hHHHHHHHHhhhhhHhhh----hcCc------------------------------------------------------
Q 011910 238 SKERYDEIESKMTPFLKA----SGYN------------------------------------------------------ 259 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~----~~~~------------------------------------------------------ 259 (475)
. ...+++...|.. .+..
T Consensus 146 ~-----~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~ 220 (697)
T COG0480 146 Y-----LVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEF 220 (697)
T ss_pred h-----hhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhc
Confidence 3 222222222211 0000
Q ss_pred ----------------------------ccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCC-----
Q 011910 260 ----------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR----- 306 (475)
Q Consensus 260 ----------------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~----- 306 (475)
...-.|.++-||.++.|+..+ |..+++.+|.|..
T Consensus 221 de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~l-------------Ldav~~~lPsP~e~~~~~ 287 (697)
T COG0480 221 DEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPL-------------LDAVVDYLPSPLDVPPIK 287 (697)
T ss_pred CHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHH-------------HHHHHHHCCChhhccccc
Confidence 001234445555555555443 3335556676521
Q ss_pred ---------------CCCCCceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----Ccccee
Q 011910 307 ---------------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRH 365 (475)
Q Consensus 307 ---------------~~~~~~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~ 365 (475)
+.+.|+.+.+.++.. ..|.+.++||+||+|+.||.++....+.+.+|..|... +.++++
T Consensus 288 g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~ 367 (697)
T COG0480 288 GDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDE 367 (697)
T ss_pred ccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeeccc
Confidence 236789999988874 46898889999999999999999888888999999875 468899
Q ss_pred eCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 366 AGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 366 a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
+.||+++++ .|++. ...|++|++.+
T Consensus 368 ~~AG~I~a~--~Gl~~--~~tGdTl~~~~ 392 (697)
T COG0480 368 VPAGDIVAL--VGLKD--ATTGDTLCDEN 392 (697)
T ss_pred ccCccEEEE--Ecccc--cccCCeeecCC
Confidence 999999994 56643 68999999776
No 44
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.3e-33 Score=308.61 Aligned_cols=288 Identities=22% Similarity=0.322 Sum_probs=219.9
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 157 (475)
..+++||+++||+|||||||+++|++.+|.+..+. .| .++++|+.+.|++||+|++.+..++.+
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiTi~~~~~~~~~~ 81 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----EQLALDFDEEEQARGITIKAANVSMVHE 81 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cC-----cceecCccHHHHHhhhhhhccceEEEEE
Confidence 46789999999999999999999999999876531 12 156799999999999999998777655
Q ss_pred ---CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 158 ---ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 158 ---~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
.++.++|+|||||.+|..++.++++.+|++|+|||+.+|+. .+|+.++.++...++| .|+++||||+..
T Consensus 82 ~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~-------~~t~~~~~~~~~~~~~-~iv~iNK~D~~~ 153 (731)
T PRK07560 82 YEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM-------PQTETVLRQALRERVK-PVLFINKVDRLI 153 (731)
T ss_pred ecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCC-------ccHHHHHHHHHHcCCC-eEEEEECchhhc
Confidence 47889999999999999999999999999999999999964 6999999999899999 689999999864
Q ss_pred CC------chHHHHHHHHhhhhhHhhhhc---------CcccCCeeEEEeecccccccccc--c----------cc----
Q 011910 235 VN------WSKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGLMGLNMKTR--V----------DK---- 283 (475)
Q Consensus 235 ~~------~~~~~~~~i~~~l~~~l~~~~---------~~~~~~~~iipiSa~~g~gi~~l--~----------~~---- 283 (475)
++ ..+.++..+.+++..++..+. +.+. +-.++..|++.++++... . +.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 232 (731)
T PRK07560 154 KELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVE-DGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKG 232 (731)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCC-CCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcC
Confidence 43 335556666666666665442 1111 224667799988777510 0 00
Q ss_pred ---CCCCCCCh-hhHHHH-hhhcCCCCC-------------------------CCCCCceEEEEEEE--ccCCeEEEEEE
Q 011910 284 ---SLCPWWNG-PCLFEA-LDRIEITPR-------------------------DPNGPFRMPIIDKF--KDMGTVVMGKV 331 (475)
Q Consensus 284 ---~~~~w~~g-~~l~~~-l~~l~~~~~-------------------------~~~~~~~~~v~~~~--~~~G~v~~g~v 331 (475)
....|+.- ..|++. .+.+|.|.. +++.|+.+.|.+++ +..|.+++|||
T Consensus 233 ~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV 312 (731)
T PRK07560 233 KQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRV 312 (731)
T ss_pred CHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEE
Confidence 00001000 124443 344676631 23468888898887 45799999999
Q ss_pred EEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 332 ESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 332 ~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
++|+|++||.|++.+.+...+|..|+.. ..++++|.||++|++ .|++ ++.+|++|+++.
T Consensus 313 ~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i--~gl~--~~~~GdtL~~~~ 375 (731)
T PRK07560 313 FSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAV--TGLK--DARAGETVVSVE 375 (731)
T ss_pred EEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEE--Eccc--ccccCCEEeCCC
Confidence 9999999999999998888899999765 568999999999996 4553 477999998765
No 45
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=6.2e-33 Score=301.54 Aligned_cols=282 Identities=22% Similarity=0.262 Sum_probs=212.9
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+++||+|+||+|+|||||+++|++.+|.+..- |+. ....+++|+.+.|++||+|++.....+.+
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------g~v-~~~~~~~D~~~~E~~rg~ti~~~~~~~~~ 72 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKI------------GEV-HDGAATMDWMEQEQERGITITSAATTCFW 72 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCcccc------------ccc-cCCcccCCCCHHHHhCCCCEeccEEEEEE
Confidence 45678999999999999999999999988875421 111 11357899999999999999999999999
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.+++++|+|||||.+|..++.++++.+|++||||||.+|+. .|+++++.++...++| +|+++||||+..++
T Consensus 73 ~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~-------~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~- 143 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVE-------PQSETVWRQADKYKVP-RIAFVNKMDRTGAD- 143 (693)
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcc-------hhhHHHHHHHHHcCCC-EEEEEECCCCCCCC-
Confidence 99999999999999999999999999999999999999964 7999999999999999 67999999996543
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccc-cccccccccCCCCC----------------------------
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRVDKSLCPW---------------------------- 288 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g-~gi~~l~~~~~~~w---------------------------- 288 (475)
+..+.++++..+... ....++|+|+..| .|+.++.......|
T Consensus 144 ----~~~~~~~i~~~l~~~-----~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (693)
T PRK00007 144 ----FYRVVEQIKDRLGAN-----PVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREK 214 (693)
T ss_pred ----HHHHHHHHHHHhCCC-----eeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHH
Confidence 334444444443321 1235667776665 23333221111111
Q ss_pred -------------------------------------------CCh--------hhHHH-HhhhcCCCCC----------
Q 011910 289 -------------------------------------------WNG--------PCLFE-ALDRIEITPR---------- 306 (475)
Q Consensus 289 -------------------------------------------~~g--------~~l~~-~l~~l~~~~~---------- 306 (475)
+-| ..|++ ++..+|.|..
T Consensus 215 l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~ 294 (693)
T PRK00007 215 LIEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPD 294 (693)
T ss_pred HHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCC
Confidence 000 12343 4455666531
Q ss_pred ----------CCCCCceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCC
Q 011910 307 ----------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGE 370 (475)
Q Consensus 307 ----------~~~~~~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~ 370 (475)
+++.|+.+.|+++.. ..|.++++||++|+|+.||+|+....+...+|..|+.. ..++++|.||+
T Consensus 295 ~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGd 374 (693)
T PRK00007 295 GEEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGD 374 (693)
T ss_pred ccccceeecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCc
Confidence 235678889998874 46999999999999999999987656667788888765 57899999999
Q ss_pred EEEEEeccCCccCCCceeEEecCC
Q 011910 371 NLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 371 ~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
+|++ .|++ +++.|++|++.+
T Consensus 375 I~~i--~gl~--~~~~GdtL~~~~ 394 (693)
T PRK00007 375 IAAA--VGLK--DTTTGDTLCDEK 394 (693)
T ss_pred EEEE--eCCc--cCCcCCEeeCCC
Confidence 9995 5553 478999998765
No 46
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=7.4e-33 Score=298.89 Aligned_cols=251 Identities=29% Similarity=0.435 Sum_probs=196.4
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+.++|+|+||+|||||||+++|.. +.+. ....+|+|+..+.+.+.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~--~~v~-----------------------------~~e~~GIT~~iga~~v~~ 334 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRK--TNVA-----------------------------AGEAGGITQHIGAYQVET 334 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHh--CCcc-----------------------------ccccCceeeeccEEEEEE
Confidence 356778999999999999999999832 1110 112478999999889999
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.++|||||||.+|..++.++++.+|++|||||+.+|.+ .||++++.++...++| +|||+||||++..+
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-------~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~- 405 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-------PQTIEAINHAKAAGVP-IIVAINKIDKPGAN- 405 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-------HhHHHHHHHHHhcCCc-EEEEEECccccccC-
Confidence 99999999999999999999999999999999999999965 6999999999999999 99999999995432
Q ss_pred hHHHHHHHHhhhhh---HhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceE
Q 011910 238 SKERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 314 (475)
Q Consensus 238 ~~~~~~~i~~~l~~---~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~ 314 (475)
. +.+..++.. +...++ .+++++|+||++|.|+.+|++. +....+.+. ...+++.+++.
T Consensus 406 -~---e~V~~eL~~~~~~~e~~g----~~vp~vpvSAktG~GI~eLle~----------I~~~~e~~~-l~~~~~~~~~g 466 (787)
T PRK05306 406 -P---DRVKQELSEYGLVPEEWG----GDTIFVPVSAKTGEGIDELLEA----------ILLQAEVLE-LKANPDRPARG 466 (787)
T ss_pred -H---HHHHHHHHHhcccHHHhC----CCceEEEEeCCCCCCchHHHHh----------hhhhhhhhh-cccCCCCCcEE
Confidence 2 223332221 112221 2478999999999999997653 111111112 23456788999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC-CccceeeCCCCEEEEEeccCCccCC-CceeEE
Q 011910 315 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDI-LSGFVL 390 (475)
Q Consensus 315 ~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i-~~G~vl 390 (475)
.|.+++ ++.|++++|+|.+|+|+.||.|++++ ...+|++|+.. +.++.+|.||+.|.+ .|++. + ..||+|
T Consensus 467 ~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I--~gl~~--~p~~Gd~l 540 (787)
T PRK05306 467 TVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEI--LGLSG--VPQAGDEF 540 (787)
T ss_pred EEEEEEEcCCCeEEEEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEE--eCCCC--CCCCCCEE
Confidence 999987 57899999999999999999999975 57899999984 779999999999996 35432 4 689999
Q ss_pred ecC
Q 011910 391 SSV 393 (475)
Q Consensus 391 ~~~ 393 (475)
+..
T Consensus 541 ~~~ 543 (787)
T PRK05306 541 VVV 543 (787)
T ss_pred EEc
Confidence 854
No 47
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=9.7e-33 Score=291.81 Aligned_cols=251 Identities=29% Similarity=0.417 Sum_probs=194.3
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+.+.|+++||+|||||||+++|... .+ .....+|+|++.+...+.+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~--~v-----------------------------~~~e~~GIT~~ig~~~v~~ 131 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKT--KV-----------------------------AQGEAGGITQHIGAYHVEN 131 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhC--Cc-----------------------------ccccCCceeecceEEEEEE
Confidence 3456689999999999999999998321 11 0112368999988888888
Q ss_pred CCe-eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 158 ETT-RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 158 ~~~-~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
.+. .++|||||||.+|...+.++++.+|++|||||+.+|.. .||.+++.++...++| +|+|+||+|++.++
T Consensus 132 ~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~-------~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~ 203 (587)
T TIGR00487 132 EDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM-------PQTIEAISHAKAANVP-IIVAINKIDKPEAN 203 (587)
T ss_pred CCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcccccCC
Confidence 655 89999999999999999999999999999999999864 6999999999999999 99999999996543
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcc---cCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCce
Q 011910 237 WSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 313 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~---~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~ 313 (475)
+ +.+.+.+ ...++.+ ....+++|+||++|.|+.++++. +. .+..+.....+++.|++
T Consensus 204 ~-----e~v~~~L----~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~----------I~-~~~~~~~l~~~~~~~~~ 263 (587)
T TIGR00487 204 P-----DRVKQEL----SEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM----------IL-LQSEVEELKANPNGQAS 263 (587)
T ss_pred H-----HHHHHHH----HHhhhhHHhcCCCceEEEEECCCCCChHHHHHh----------hh-hhhhhccccCCCCCCce
Confidence 2 2222222 2222211 12468999999999999997542 21 11223333345668999
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEE-CCccceeeCCCCEEEEEeccCCccCCCceeEE
Q 011910 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC-DDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (475)
Q Consensus 314 ~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~-~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (475)
+.|.+++ ++.|++++|+|.+|+|++||.|+++|. ..+|++|+. ++.++++|.||+.|.+. |++. --..|+.+
T Consensus 264 ~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~~-~p~aGd~~ 338 (587)
T TIGR00487 264 GVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEIL--GLSD-VPAAGDEF 338 (587)
T ss_pred eEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEe--CCCC-CCCCCCEE
Confidence 9999998 678999999999999999999999885 578999998 57899999999999863 5532 12678888
Q ss_pred ec
Q 011910 391 SS 392 (475)
Q Consensus 391 ~~ 392 (475)
.-
T Consensus 339 ~~ 340 (587)
T TIGR00487 339 IV 340 (587)
T ss_pred EE
Confidence 74
No 48
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.2e-32 Score=299.45 Aligned_cols=275 Identities=21% Similarity=0.228 Sum_probs=209.8
Q ss_pred cCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 77 ~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
+...+++||+|+||+|||||||+++|++.+|.+... |+. ....+++|+.+.|++||+|++.....+.
T Consensus 3 ~~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~------------~~v-~~~~~~~D~~~~E~~rgiti~~~~~~~~ 69 (691)
T PRK12739 3 FPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKI------------GEV-HDGAATMDWMEQEQERGITITSAATTCF 69 (691)
T ss_pred CCccCeeEEEEECCCCCCHHHHHHHHHHhCCCcccc------------ccc-cCCccccCCChhHhhcCCCccceeEEEE
Confidence 345678999999999999999999999988865321 110 1135789999999999999999999999
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
+.+++++|+|||||.+|..++.++++.+|++|+|||+..|.. .|+++++.++...++| +|+++||||+..++
T Consensus 70 ~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~-------~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~ 141 (691)
T PRK12739 70 WKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVE-------PQSETVWRQADKYGVP-RIVFVNKMDRIGAD 141 (691)
T ss_pred ECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999999863 7999999999999999 78999999996543
Q ss_pred chHHHHHHHHhhhhhHhhhhcCc---------------------------------------------------------
Q 011910 237 WSKERYDEIESKMTPFLKASGYN--------------------------------------------------------- 259 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~--------------------------------------------------------- 259 (475)
+..+.++++..+....+.
T Consensus 142 -----~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~ 216 (691)
T PRK12739 142 -----FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEA 216 (691)
T ss_pred -----HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHh
Confidence 223333333333211000
Q ss_pred --------------------------------ccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCC-
Q 011910 260 --------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR- 306 (475)
Q Consensus 260 --------------------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~- 306 (475)
...-+|++..||+++.|+..| |..++..+|.|..
T Consensus 217 v~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~L-------------Ld~I~~~lPsP~~~ 283 (691)
T PRK12739 217 VAEVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPL-------------LDAVVDYLPSPLDV 283 (691)
T ss_pred hhhcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHH-------------HHHHHHHCCChhhc
Confidence 001124444455555555543 2234455666531
Q ss_pred ------------------CCCCCceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----Ccc
Q 011910 307 ------------------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNR 362 (475)
Q Consensus 307 ------------------~~~~~~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~ 362 (475)
+++.||.+.|++++. ..|.++++||++|+|+.||.|+....+...+|..|+.. ..+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~ 363 (691)
T PRK12739 284 PAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREE 363 (691)
T ss_pred cccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCccc
Confidence 346688999999874 46999999999999999999987766667788888664 578
Q ss_pred ceeeCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 363 VRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 363 v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
++++.||+++++. |++ +++.|++|++..
T Consensus 364 v~~~~aGdI~~i~--gl~--~~~~gdtl~~~~ 391 (691)
T PRK12739 364 IKEVYAGDIAAAV--GLK--DTTTGDTLCDEK 391 (691)
T ss_pred ccccCCCCEEEEe--CCC--cccCCCEEeCCC
Confidence 9999999999963 654 378999998765
No 49
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=7.1e-32 Score=282.52 Aligned_cols=280 Identities=20% Similarity=0.232 Sum_probs=213.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.+||+|+||+|||||||+++|++..|.+...... .+++ ......+|+.+.|++||+|+......+.+.+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v--------~~~~-~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~ 78 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRK-SGRHATSDWMEMEKQRGISVTSSVMQFPYRD 78 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCcccccee--------eccc-cCccccCCCcHHHHhhCCceeeeeEEEEECC
Confidence 467899999999999999999999988876542210 0000 0112347889999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
+.++|||||||.+|...+.++++.+|++|+|||+..|+. .+++..+..+...++| +++++||||+..+++.
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~- 149 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-------PQTRKLMEVCRLRDTP-IFTFINKLDRDGREPL- 149 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECCcccccCHH-
Confidence 999999999999999999999999999999999999863 6899999999999999 8999999999665532
Q ss_pred HHHHHHHhhhhh-----------------------------------------------------Hhhh---------h-
Q 011910 240 ERYDEIESKMTP-----------------------------------------------------FLKA---------S- 256 (475)
Q Consensus 240 ~~~~~i~~~l~~-----------------------------------------------------~l~~---------~- 256 (475)
+.++++.+.+.. ++.. +
T Consensus 150 ~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~le 229 (526)
T PRK00741 150 ELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELE 229 (526)
T ss_pred HHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHH
Confidence 222232221110 0000 0
Q ss_pred ------------cCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCC---------CCCCceEE
Q 011910 257 ------------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPFRMP 315 (475)
Q Consensus 257 ------------~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~---------~~~~~~~~ 315 (475)
.+....-+|++..||+++.|+..| |..+++.+|.|... .+.+|...
T Consensus 230 l~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~L-------------Ld~i~~~~P~P~~~~~~~~~~~~~~~~~~~~ 296 (526)
T PRK00741 230 LVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEF-------------LDAFVEWAPAPQPRQTDEREVEPTEEKFSGF 296 (526)
T ss_pred hhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHH-------------HHHHHHHCCCCCcccccceeecCCCCceEEE
Confidence 000012367888899999999875 34455667766421 23568888
Q ss_pred EEEEE-----ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCc
Q 011910 316 IIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 386 (475)
Q Consensus 316 v~~~~-----~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (475)
|+.+. +..|++++.||.||+|+.|+.|+....++..++..++.. +.++++|.|||++++ .++ .+++.
T Consensus 297 VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v--~~l--~~~~~ 372 (526)
T PRK00741 297 VFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGL--HNH--GTIQI 372 (526)
T ss_pred EEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEE--ECC--CCCcc
Confidence 88876 257999999999999999999999888888888887664 578999999999995 444 45899
Q ss_pred eeEEecCC
Q 011910 387 GFVLSSVA 394 (475)
Q Consensus 387 G~vl~~~~ 394 (475)
||+|+..+
T Consensus 373 GDTL~~~~ 380 (526)
T PRK00741 373 GDTFTQGE 380 (526)
T ss_pred CCCccCCC
Confidence 99998755
No 50
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-32 Score=272.93 Aligned_cols=238 Identities=28% Similarity=0.441 Sum_probs=188.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
.+.+.|+++||+|||||||++.+....- ......|+|..++.+.+.++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~V-------------------------------a~~EaGGITQhIGA~~v~~~~ 51 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNV-------------------------------AAGEAGGITQHIGAYQVPLDV 51 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcc-------------------------------ccccCCceeeEeeeEEEEecc
Confidence 4567899999999999999999832111 12234799999999999985
Q ss_pred --CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 159 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 159 --~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
...++|||||||+-|..+..+|...+|++|||||+.+|++ +||.|.+.++++.++| |||++||||++.++
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~-------pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n 123 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVM-------PQTIEAINHAKAAGVP-IVVAINKIDKPEAN 123 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcc-------hhHHHHHHHHHHCCCC-EEEEEecccCCCCC
Confidence 4789999999999999999999999999999999999986 7999999999999999 99999999997665
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcc---cCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCce
Q 011910 237 WSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 313 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~---~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~ 313 (475)
... +..++ .+.|+.+ ..++.|+|+||++|+|+.+|+.. ++ ++.....-..+++.+.+
T Consensus 124 p~~-----v~~el----~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~----------il-l~aev~elka~~~~~a~ 183 (509)
T COG0532 124 PDK-----VKQEL----QEYGLVPEEWGGDVIFVPVSAKTGEGIDELLEL----------IL-LLAEVLELKANPEGPAR 183 (509)
T ss_pred HHH-----HHHHH----HHcCCCHhhcCCceEEEEeeccCCCCHHHHHHH----------HH-HHHHHHhhhcCCCCcce
Confidence 332 33322 2234432 35689999999999999997553 11 22222222345678899
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC-CccceeeCCCCEEEEEeccCC
Q 011910 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIE 380 (475)
Q Consensus 314 ~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~ 380 (475)
..+.++. +|.|.+++..|.+|+|++||.|+++.. ..+|+.+... ..++..+.++..+.+ .+++
T Consensus 184 gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~--~g~I~t~v~~~~~~i~~a~ps~~v~i--~g~~ 249 (509)
T COG0532 184 GTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGE--YGRVRTMVDDLGKPIKEAGPSKPVEI--LGLS 249 (509)
T ss_pred EEEEEEEeccCCCceEEEEEecCeEecCCEEEEccC--CCceEEeehhcCCCccccCCCCCeEE--eccc
Confidence 9999987 689999999999999999999999654 5678888765 678888888877664 4443
No 51
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-32 Score=271.64 Aligned_cols=257 Identities=27% Similarity=0.381 Sum_probs=200.3
Q ss_pred cccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeee
Q 011910 73 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR 152 (475)
Q Consensus 73 ~~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~ 152 (475)
.+......+.+.|.|+||+|||||||++.|....-. .....|||..++.
T Consensus 144 a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-------------------------------A~E~GGITQhIGA 192 (683)
T KOG1145|consen 144 ADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVA-------------------------------AGEAGGITQHIGA 192 (683)
T ss_pred cCHhhcCCCCCeEEEeecccCChhhHHHHHhhCcee-------------------------------hhhcCCccceece
Confidence 344555678889999999999999999998322111 1123789999998
Q ss_pred eEEee-CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 153 AHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 153 ~~~~~-~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
+.... .+..++|+|||||.-|..++.+|+..+|.+||||.|.+|++ +||.|.+.+++..++| +||+|||+|
T Consensus 193 F~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVm-------pQT~EaIkhAk~A~Vp-iVvAinKiD 264 (683)
T KOG1145|consen 193 FTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVM-------PQTLEAIKHAKSANVP-IVVAINKID 264 (683)
T ss_pred EEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCcc-------HhHHHHHHHHHhcCCC-EEEEEeccC
Confidence 87655 56889999999999999999999999999999999999987 6999999999999999 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhh---HhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCC
Q 011910 232 DHTVNWSKERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDP 308 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~---~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~ 308 (475)
.++++.. .++++|.. .+..+| .+++++|+||++|+|+..|.+. ++-..+.+. -..++
T Consensus 265 kp~a~pe-----kv~~eL~~~gi~~E~~G----GdVQvipiSAl~g~nl~~L~ea----------ill~Ae~md-LkA~p 324 (683)
T KOG1145|consen 265 KPGANPE-----KVKRELLSQGIVVEDLG----GDVQVIPISALTGENLDLLEEA----------ILLLAEVMD-LKADP 324 (683)
T ss_pred CCCCCHH-----HHHHHHHHcCccHHHcC----CceeEEEeecccCCChHHHHHH----------HHHHHHHhh-cccCC
Confidence 9877632 23332221 233333 5799999999999999987553 221112222 12357
Q ss_pred CCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC-CccceeeCCCCEEEEEeccCCccCCC
Q 011910 309 NGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDIL 385 (475)
Q Consensus 309 ~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~ 385 (475)
..|+...|.++. +++|.+++..|..|+|+.|+.++.+ ..-++|+++..+ ++++++|.|++.|.+ .|+. .--.
T Consensus 325 ~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G--~~w~KVr~l~D~nGk~i~~A~Ps~pv~V--~Gwk-dlP~ 399 (683)
T KOG1145|consen 325 KGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAG--KSWCKVRALFDHNGKPIDEATPSQPVEV--LGWK-DLPI 399 (683)
T ss_pred CCCceEEEEEeeecCCccceeEEEEeccccccccEEEEe--chhhhhhhhhhcCCCCccccCCCCceEe--eccc-CCCC
Confidence 789999999886 7899999999999999999999984 456799999876 789999999999995 4543 1234
Q ss_pred ceeEEecC
Q 011910 386 SGFVLSSV 393 (475)
Q Consensus 386 ~G~vl~~~ 393 (475)
.||.+...
T Consensus 400 aGD~vleV 407 (683)
T KOG1145|consen 400 AGDEVLEV 407 (683)
T ss_pred CCceEEEE
Confidence 67766544
No 52
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=3.1e-31 Score=288.57 Aligned_cols=274 Identities=22% Similarity=0.257 Sum_probs=207.1
Q ss_pred cCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 77 ~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
+...+++||+|+||+|||||||+++|++.+|.+... |+. ..+.+++|+.+.|+++|+|++.....+.
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------~~~-~~g~~~~D~~~~e~~rgiti~~~~~~~~ 71 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKI------------GEV-HDGAATMDWMEQEKERGITITSAATTVF 71 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCcccc------------ccc-cCCccccCCCHHHHhcCCCEecceEEEE
Confidence 345678999999999999999999999988865321 100 1235789999999999999999999999
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
+.+++++|+|||||.+|..++..+++.+|++|||||+..|.. .++++++..+...++| +++|+||||+..++
T Consensus 72 ~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~ 143 (689)
T TIGR00484 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQ-------PQSETVWRQANRYEVP-RIAFVNKMDKTGAN 143 (689)
T ss_pred ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCC-EEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999999864 6899999999999999 77899999996544
Q ss_pred chHHHHHHHHhhhhhHhhhhcCc---------------------------------------------------------
Q 011910 237 WSKERYDEIESKMTPFLKASGYN--------------------------------------------------------- 259 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~--------------------------------------------------------- 259 (475)
+..+.+++...+....+.
T Consensus 144 -----~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v 218 (689)
T TIGR00484 144 -----FLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAV 218 (689)
T ss_pred -----HHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 222333333322211000
Q ss_pred -------------------------------ccCCeeEEEeecccccccccccccCCCCCCChhhHHH-HhhhcCCCCC-
Q 011910 260 -------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPR- 306 (475)
Q Consensus 260 -------------------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~-~l~~l~~~~~- 306 (475)
...-+|++..||+++.|+.. |++ ++..+|.|..
T Consensus 219 ~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~ 284 (689)
T TIGR00484 219 AEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQL--------------LLDAVVDYLPSPTDV 284 (689)
T ss_pred HhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHH--------------HHHHHHHHCCCchhc
Confidence 00122344445555555544 333 4455666531
Q ss_pred ------------------CCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----Ccc
Q 011910 307 ------------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNR 362 (475)
Q Consensus 307 ------------------~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~ 362 (475)
+++.||.+.|.++. +..|.++++||++|+|+.||+|+....+...+|..|+.. ..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~ 364 (689)
T TIGR00484 285 PAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREE 364 (689)
T ss_pred ccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCccc
Confidence 23567888898887 457999999999999999999997666666677777664 468
Q ss_pred ceeeCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 363 VRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 363 v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
++++.||++|++ .|++ ++++|++|++..
T Consensus 365 v~~~~aGdI~~i--~gl~--~~~~gdtl~~~~ 392 (689)
T TIGR00484 365 IKEVRAGDICAA--IGLK--DTTTGDTLCDPK 392 (689)
T ss_pred ccccCCCCEEEE--cCCC--CCCCCCEEeCCC
Confidence 999999999996 5554 468999998765
No 53
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=100.00 E-value=7.5e-32 Score=248.35 Aligned_cols=175 Identities=36% Similarity=0.593 Sum_probs=151.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe--e
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--T 157 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~--~ 157 (475)
++++||+++||+|||||||+++|++..+.+..+...+. ....+|..+.|+++|+|++.....+. .
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~-------------~~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEET-------------KNAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHH-------------HHCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhcccccccccccc-------------ccccccccchhhhcccccccccccccccc
Confidence 46799999999999999999999999998777553320 12357889999999999999999999 9
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.++|+|||||.+|.+++.+++..+|++|+|||+.+|.. .++++++..+..+++| +|||+||||+.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~-------~~~~~~l~~~~~~~~p-~ivvlNK~D~~---- 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQ-------PQTEEHLKILRELGIP-IIVVLNKMDLI---- 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBST-------HHHHHHHHHHHHTT-S-EEEEEETCTSS----
T ss_pred cccceeecccccccceeecccceecccccceeeeecccccc-------cccccccccccccccc-eEEeeeeccch----
Confidence 99999999999999999999999999999999999999964 7999999999999999 99999999994
Q ss_pred hHHHHHHHHhhhh-hHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 238 SKERYDEIESKMT-PFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 238 ~~~~~~~i~~~l~-~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+.+++++.+++. .+++..++.....++++|+||++|.|+..|
T Consensus 136 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~L 178 (188)
T PF00009_consen 136 -EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDEL 178 (188)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred -hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHH
Confidence 567778888887 566777665213689999999999999985
No 54
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.98 E-value=6.7e-31 Score=275.24 Aligned_cols=276 Identities=19% Similarity=0.199 Sum_probs=209.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.+||+|+||+|||||||+++|++..|.+..... ..++++ ....++|..+.|++||+|+......+.+.+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~--------v~~~g~-~~~t~~D~~~~E~~rgisi~~~~~~~~~~~ 79 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGA--------VKGRGS-QRHAKSDWMEMEKQRGISITTSVMQFPYRD 79 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccce--------eccccc-cccccCCCCHHHHhcCCcEEEEEEEEeeCC
Confidence 56789999999999999999999998887654221 001111 112358999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
+.++|+|||||.+|...+.++++.+|++|+|||+..|+. .+++.++..+...++| +|+++||||+..++..
T Consensus 80 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~~- 150 (527)
T TIGR00503 80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-------TRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDPL- 150 (527)
T ss_pred eEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECccccCCCHH-
Confidence 999999999999999999999999999999999998853 6889999988888999 8899999999544321
Q ss_pred HHHHHHHhhhhhHhhhhcC-------------------------------------------------------------
Q 011910 240 ERYDEIESKMTPFLKASGY------------------------------------------------------------- 258 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~------------------------------------------------------------- 258 (475)
++.++++..+....+
T Consensus 151 ----~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 226 (527)
T TIGR00503 151 ----ELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLR 226 (527)
T ss_pred ----HHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHH
Confidence 222222222211000
Q ss_pred ------------------cccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCC---------CCCC
Q 011910 259 ------------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGP 311 (475)
Q Consensus 259 ------------------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~---------~~~~ 311 (475)
....-+|++..||+++.|+..| |..+++.+|.|... ...+
T Consensus 227 ~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~L-------------Ld~i~~~~PsP~~~~~~~~~~~~~~~~ 293 (527)
T TIGR00503 227 DELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDHF-------------LDGLLQWAPKPEARQSDTRTVEPTEEK 293 (527)
T ss_pred HHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHHH-------------HHHHHHHCCCCccccCCceecCCCCCC
Confidence 0012245666677777777664 33455667766421 2356
Q ss_pred ceEEEEEEEc-----cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCcc
Q 011910 312 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 382 (475)
Q Consensus 312 ~~~~v~~~~~-----~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~ 382 (475)
|...|+++.. ..|++++.||.||+|+.|++|+....+.+.++..++.. +.++++|.|||++++ .++ .
T Consensus 294 ~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~--~~~--~ 369 (527)
T TIGR00503 294 FSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGL--HNH--G 369 (527)
T ss_pred eeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEE--ECC--C
Confidence 7788888753 47999999999999999999999888888898888664 578999999999985 444 4
Q ss_pred CCCceeEEecCC
Q 011910 383 DILSGFVLSSVA 394 (475)
Q Consensus 383 ~i~~G~vl~~~~ 394 (475)
+++.||+|++.+
T Consensus 370 ~~~~GDtl~~~~ 381 (527)
T TIGR00503 370 TIQIGDTFTQGE 381 (527)
T ss_pred CcccCCEecCCC
Confidence 589999998754
No 55
>PRK13351 elongation factor G; Reviewed
Probab=99.98 E-value=1.1e-30 Score=284.83 Aligned_cols=274 Identities=22% Similarity=0.302 Sum_probs=213.3
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
.....+||+|+||+|+|||||+++|++.+|.+.... .... ..+++|+...|+++|+|+......+.+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~-------~v~~------~~~~~d~~~~e~~r~~ti~~~~~~~~~ 70 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMG-------EVED------GTTVTDWMPQEQERGITIESAATSCDW 70 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccc-------cccC------CcccCCCCHHHHhcCCCcccceEEEEE
Confidence 345679999999999999999999998887654321 0001 245789999999999999999999999
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.++|||||||.+|...+..+++.+|++|+|+|+..+.. .++.+++..+...++| +++|+||+|+..+++
T Consensus 71 ~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 142 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQ-------PQTETVWRQADRYGIP-RLIFINKMDRVGADL 142 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECCCCCCCCH
Confidence 99999999999999999999999999999999999999853 5888899999889999 789999999966542
Q ss_pred hHHHHHHHHhhhhhHhhhh-------------------------------------------------------------
Q 011910 238 SKERYDEIESKMTPFLKAS------------------------------------------------------------- 256 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~------------------------------------------------------------- 256 (475)
..+.++++..+...
T Consensus 143 -----~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ 217 (687)
T PRK13351 143 -----FKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEAL 217 (687)
T ss_pred -----HHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHH
Confidence 22222222221110
Q ss_pred -------------c--Cc-------------ccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCC--
Q 011910 257 -------------G--YN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR-- 306 (475)
Q Consensus 257 -------------~--~~-------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~-- 306 (475)
+ +. ...-+|++..||++|.|+..| |..++..+|.|..
T Consensus 218 ~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~L-------------Ld~I~~~lPsP~~~~ 284 (687)
T PRK13351 218 AEFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPL-------------LDAVVDYLPSPLEVP 284 (687)
T ss_pred HhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHH-------------HHHHHHHCCChhhcc
Confidence 0 00 012356777799999999875 3345566666632
Q ss_pred ----------------CCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----Cccce
Q 011910 307 ----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVR 364 (475)
Q Consensus 307 ----------------~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~ 364 (475)
+++.|+.+.|.+++ +..|.++++||++|+|+.||+|++.+.+...+|..|+.. ..+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~ 364 (687)
T PRK13351 285 PPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVD 364 (687)
T ss_pred cccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECC
Confidence 34678999999987 357999999999999999999999988877888888664 57899
Q ss_pred eeCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 365 HAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 365 ~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
+|.||++++ +.|++ ++..|++|++..
T Consensus 365 ~~~aGdI~~--i~gl~--~~~~gdtl~~~~ 390 (687)
T PRK13351 365 RAKAGDIVA--VAGLK--ELETGDTLHDSA 390 (687)
T ss_pred ccCCCCEEE--EECcc--cCccCCEEeCCC
Confidence 999999998 46654 467899998765
No 56
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.8e-31 Score=269.49 Aligned_cols=213 Identities=19% Similarity=0.210 Sum_probs=171.1
Q ss_pred CCCCCCCC--CchhhhcCccccC---chhhcccCCCCCCCCcccccccccccccccccccccC------CcceeeEEEEe
Q 011910 21 VVNPGDAR--PEEVEVVDKMEED---SEEVQAVSQPVHPEPKVKHKEVSAVEDAESQQETEGN------NKRHLNVVFIG 89 (475)
Q Consensus 21 ~~~~~~~~--~~~~~~~~~~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~ivG 89 (475)
.+.+++++ +.++++++++.+. ++|.|+..+|+++|.+.+++...+.+.+++.++.++. +...+||+++|
T Consensus 56 vvLhedK~yypsaeevYG~dVE~lvqeed~Qpl~~Pli~Pv~~~k~q~~~~~~p~T~y~~~yl~~l~~~p~~irnV~l~G 135 (971)
T KOG0468|consen 56 VVLHEDKKYYPSAEEVYGEDVETLVQEEDTQPLREPLIEPVRRLKFQIHERDVPETVYDLEYLAGLMDNPERIRNVGLVG 135 (971)
T ss_pred eeeccccccCcccccccCCcceeeeeccccCCcccccchhhhhhhhhhhhcccchhhhhHHHHHHhccCcceEEEEEEee
Confidence 34444444 6667777776664 8899999999999999999999999999999988876 67889999999
Q ss_pred cCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-----CeeEEE
Q 011910 90 HVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-----TTRFTI 164 (475)
Q Consensus 90 ~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-----~~~~~l 164 (475)
|.+||||+|++.|+.+++.--..... .-..++|.+..|++||++|+....++... ++.++|
T Consensus 136 hLhhGKT~l~D~Lv~~tHp~~~~~~e--------------~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 136 HLHHGKTALMDLLVEQTHPDFSKNTE--------------ADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccccChhHHHHhhceecccccccccc--------------ccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 99999999999998887732111100 11357899999999999999998886553 467999
Q ss_pred EeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC------CCch
Q 011910 165 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT------VNWS 238 (475)
Q Consensus 165 iDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~------~~~~ 238 (475)
+|||||.+|++++.++++.+|++|||||+.+|++ -+|.+.++++.....| +++||||+|+.- ..-.
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVm-------lntEr~ikhaiq~~~~-i~vviNKiDRLilELkLPP~DA 273 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVM-------LNTERIIKHAIQNRLP-IVVVINKVDRLILELKLPPMDA 273 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCce-------eeHHHHHHHHHhccCc-EEEEEehhHHHHHHhcCChHHH
Confidence 9999999999999999999999999999999987 5899999999999999 999999999721 1112
Q ss_pred HHHHHHHHhhhhhHhhh
Q 011910 239 KERYDEIESKMTPFLKA 255 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~ 255 (475)
..++..+..++...+..
T Consensus 274 Y~KLrHii~~iN~~is~ 290 (971)
T KOG0468|consen 274 YYKLRHIIDEINNLIST 290 (971)
T ss_pred HHHHHHHHHHhcchhhh
Confidence 33455566666644433
No 57
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.97 E-value=1.1e-30 Score=279.63 Aligned_cols=252 Identities=25% Similarity=0.381 Sum_probs=190.9
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+.++|+++||+|||||||+++|...... ....+|+|+....+.+.+
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~-------------------------------~~e~~GiTq~i~~~~v~~ 288 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIA-------------------------------QKEAGGITQKIGAYEVEF 288 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCc-------------------------------cccCCccccccceEEEEE
Confidence 3457789999999999999999998432221 122367887776665554
Q ss_pred ----CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCC
Q 011910 158 ----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 158 ----~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~ 233 (475)
.+..++|||||||..|..++.+++..+|++|||||+..|.. .||.+++..+...++| +|||+||+|++
T Consensus 289 ~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~-------~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 289 EYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVK-------PQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred EecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC-------hhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 35889999999999999999999999999999999999864 6999999999999999 99999999995
Q ss_pred CCCchHHHHHHHHhhhhhH---hhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCC
Q 011910 234 TVNWSKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNG 310 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~---l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~ 310 (475)
..+ ++.+.+++..+ ...++ ..++++++||++|.|+.+|++. +..+.. +.....+++.
T Consensus 361 ~~~-----~e~v~~eL~~~~ll~e~~g----~~vpvv~VSAktG~GIdeLle~----------I~~l~e-~~~lk~~~~~ 420 (742)
T CHL00189 361 NAN-----TERIKQQLAKYNLIPEKWG----GDTPMIPISASQGTNIDKLLET----------ILLLAE-IEDLKADPTQ 420 (742)
T ss_pred ccC-----HHHHHHHHHHhccchHhhC----CCceEEEEECCCCCCHHHHHHh----------hhhhhh-hhcccCCCCC
Confidence 432 23333333221 11121 2468999999999999987542 222111 1222234556
Q ss_pred CceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC-CccceeeCCCCEEEEEeccCCccCCCce
Q 011910 311 PFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSG 387 (475)
Q Consensus 311 ~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (475)
|+...+.+++ ++.|++++|+|.+|+|+.||.|+++| ...+|++|... +.++.+|.||+.|.+ .|++ .....|
T Consensus 421 ~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~G 495 (742)
T CHL00189 421 LAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATG 495 (742)
T ss_pred CceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCC
Confidence 8888888876 57899999999999999999999987 45799999854 789999999999985 5553 245678
Q ss_pred eEEecC
Q 011910 388 FVLSSV 393 (475)
Q Consensus 388 ~vl~~~ 393 (475)
+.+.-.
T Consensus 496 d~l~v~ 501 (742)
T CHL00189 496 EHFQVF 501 (742)
T ss_pred CEEEEe
Confidence 888654
No 58
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.97 E-value=2.8e-30 Score=273.70 Aligned_cols=252 Identities=24% Similarity=0.346 Sum_probs=184.9
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 157 (475)
..+.+.|+++||+|||||||+++|...... .....++|...+...+.+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~-------------------------------~~~~g~itq~ig~~~~~~~ 51 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVA-------------------------------AKEAGGITQHIGATEVPID 51 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccc-------------------------------cCCCCceEEeeceeecccc
Confidence 346678999999999999999999432110 001123333332222111
Q ss_pred -----------------CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCC
Q 011910 158 -----------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 220 (475)
Q Consensus 158 -----------------~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i 220 (475)
.-..++|+|||||.+|...+.++++.+|++|||+|+..|.. .++.+++.++...++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~-------~qt~e~i~~~~~~~v 124 (586)
T PRK04004 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQ-------PQTIEAINILKRRKT 124 (586)
T ss_pred ccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCC
Confidence 11137999999999999999999999999999999999853 699999999999999
Q ss_pred ceEEEEEEccCCCCCCch------------------HHHHHHHHhhhhhHhhhhcCcc---------cCCeeEEEeeccc
Q 011910 221 TKLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLM 273 (475)
Q Consensus 221 ~~iivviNKiD~~~~~~~------------------~~~~~~i~~~l~~~l~~~~~~~---------~~~~~iipiSa~~ 273 (475)
| +++|+||+|+. ..|. ++.|++...++..+|...|+.+ ..+++++|+||++
T Consensus 125 p-iIvviNK~D~~-~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~t 202 (586)
T PRK04004 125 P-FVVAANKIDRI-PGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKT 202 (586)
T ss_pred C-EEEEEECcCCc-hhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCC
Confidence 9 99999999984 2344 3455566666667777777653 2468999999999
Q ss_pred ccccccccccCCCCCCChhhHHHHhhh-cCC-CCCCCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCC
Q 011910 274 GLNMKTRVDKSLCPWWNGPCLFEALDR-IEI-TPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA 349 (475)
Q Consensus 274 g~gi~~l~~~~~~~w~~g~~l~~~l~~-l~~-~~~~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~ 349 (475)
|.|+.+|... +...++. ++. -..+.+.|++++|.+++ ++.|++++|+|.+|+|++||.|+++|...
T Consensus 203 GeGi~dLl~~----------i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~ 272 (586)
T PRK04004 203 GEGIPDLLMV----------LAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDG 272 (586)
T ss_pred CCChHHHHHH----------HHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCC
Confidence 9999987543 2222221 221 12456789999999998 68899999999999999999999999874
Q ss_pred --eEEEEEEEEC------------CccceeeCCCCEEEEEeccCC
Q 011910 350 --QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIE 380 (475)
Q Consensus 350 --~~~V~si~~~------------~~~v~~a~aG~~v~i~l~~~~ 380 (475)
.++|++|..+ ...+++|.|...|.+...|++
T Consensus 273 ~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~ 317 (586)
T PRK04004 273 PIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLE 317 (586)
T ss_pred cceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCcc
Confidence 5799999875 255667777776665434443
No 59
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.97 E-value=2.4e-30 Score=282.16 Aligned_cols=288 Identities=21% Similarity=0.340 Sum_probs=208.4
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeE----
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH---- 154 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~---- 154 (475)
....+||+++||+|||||||+++|++.+|.+.... .|. .+++|+.+.|++||+|++....+
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~~~-----~~~~d~~~~e~~rg~Ti~~~~~~~~~~ 80 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL----------AGQ-----QLYLDFDEQEQERGITINAANVSMVHE 80 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc----------CCc-----eeecCCCHHHHhhcchhhcccceeEEe
Confidence 45679999999999999999999999988775421 111 35789999999999999987655
Q ss_pred EeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 155 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 155 ~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
+.+.++.++|||||||.+|...+..+++.+|++|+|+|+..|+. .++++++..+...++| +|+|+||||+..
T Consensus 81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~ 152 (720)
T TIGR00490 81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVM-------PQTETVLRQALKENVK-PVLFINKVDRLI 152 (720)
T ss_pred ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCC-------ccHHHHHHHHHHcCCC-EEEEEEChhccc
Confidence 56788999999999999999999999999999999999999864 6899999998889999 679999999964
Q ss_pred CC------chHHHHHHHHhhhhhHhhhhc---------CcccCCeeEEEeeccccccc------------ccccc----c
Q 011910 235 VN------WSKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGLMGLNM------------KTRVD----K 283 (475)
Q Consensus 235 ~~------~~~~~~~~i~~~l~~~l~~~~---------~~~~~~~~iipiSa~~g~gi------------~~l~~----~ 283 (475)
++ +.+++|..+...+...++... +.+. ...+...|++.++++ .++.. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 231 (720)
T TIGR00490 153 NELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVE-DGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKED 231 (720)
T ss_pred chhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechh-hCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhc
Confidence 43 234455555555555553310 0000 011222244443221 01000 0
Q ss_pred ---CCCCCCC-hhhHHHH-hhhcCCCCC-------------------------CCCCCceEEEEEEE--ccCCeEEEEEE
Q 011910 284 ---SLCPWWN-GPCLFEA-LDRIEITPR-------------------------DPNGPFRMPIIDKF--KDMGTVVMGKV 331 (475)
Q Consensus 284 ---~~~~w~~-g~~l~~~-l~~l~~~~~-------------------------~~~~~~~~~v~~~~--~~~G~v~~g~v 331 (475)
....|+. -..|++. ...+|.|.. +.+.|+.+.|.+++ ++.|++++|||
T Consensus 232 ~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV 311 (720)
T TIGR00490 232 KQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRL 311 (720)
T ss_pred cHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEE
Confidence 0001111 1223433 344566531 23467888888886 46899999999
Q ss_pred EEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 332 ESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 332 ~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
++|+|++||.|++.+.+...+|..|+.. ..++++|.||++|++ .|++ ++.+||+|++++
T Consensus 312 ~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL~~~~ 374 (720)
T TIGR00490 312 YSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAV--IGLK--DAVAGETICTTV 374 (720)
T ss_pred EeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEE--ECcc--ccccCceeecCC
Confidence 9999999999999999989999999875 468999999999986 4553 578999998765
No 60
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.97 E-value=9.7e-30 Score=268.49 Aligned_cols=258 Identities=21% Similarity=0.379 Sum_probs=181.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 158 (475)
+.+.|+++||+|||||||+++|.+..-. .....|+|...+...+.+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~-------------------------------~~e~ggiTq~iG~~~v~~~~~ 51 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA-------------------------------KREAGGITQHIGATEIPMDVI 51 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccc-------------------------------cccCCceecccCeeEeeeccc
Confidence 4578999999999999999999543110 0112344444433333221
Q ss_pred ----------------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCce
Q 011910 159 ----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 222 (475)
Q Consensus 159 ----------------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~ 222 (475)
...++|+|||||..|...+..+++.+|++|||+|+.+|.. .++.+++.+++..++|
T Consensus 52 ~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~-------~qt~e~i~~l~~~~vp- 123 (590)
T TIGR00491 52 EGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYKTP- 123 (590)
T ss_pred cccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCC-------HhHHHHHHHHHHcCCC-
Confidence 1248999999999999999999999999999999999864 6899999999999999
Q ss_pred EEEEEEccCCCCCCchHH------------------HHHHHHhhhhhHhhhhcCcc---------cCCeeEEEeeccccc
Q 011910 223 LLLVVNKMDDHTVNWSKE------------------RYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMGL 275 (475)
Q Consensus 223 iivviNKiD~~~~~~~~~------------------~~~~i~~~l~~~l~~~~~~~---------~~~~~iipiSa~~g~ 275 (475)
+|+|+||+|+.. .|... .+++....+...|...|+.. ..+++++|+||++|+
T Consensus 124 iIVv~NK~Dl~~-~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe 202 (590)
T TIGR00491 124 FVVAANKIDRIP-GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE 202 (590)
T ss_pred EEEEEECCCccc-hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC
Confidence 999999999952 34210 11111222223345555542 246899999999999
Q ss_pred ccccccccCCCCCCChhhHHHHhhh-cC-CCCCCCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCC--
Q 011910 276 NMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA-- 349 (475)
Q Consensus 276 gi~~l~~~~~~~w~~g~~l~~~l~~-l~-~~~~~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~-- 349 (475)
|+.+|... |..+.+. ++ ....+.+.|++++|.+++ +|.|++++|+|.+|+|++||.|+++|.+.
T Consensus 203 GideLl~~----------l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i 272 (590)
T TIGR00491 203 GIPELLTM----------LAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVI 272 (590)
T ss_pred ChhHHHHH----------HHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcc
Confidence 99997542 2222221 21 112356789999999998 58899999999999999999999999874
Q ss_pred eEEEEEEEECC------------ccceeeCCCCEEEEEeccCCccCCCceeEE
Q 011910 350 QVKVLAIYCDD------------NRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (475)
Q Consensus 350 ~~~V~si~~~~------------~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (475)
.++|++|...+ ..+.++.|..-+-+...|++. ...|+.+
T Consensus 273 ~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~--~~aG~~~ 323 (590)
T TIGR00491 273 VTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD--VMAGSPI 323 (590)
T ss_pred cEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC--CCCCCEE
Confidence 68999998653 355666666555555555543 3445544
No 61
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.8e-30 Score=252.96 Aligned_cols=280 Identities=21% Similarity=0.248 Sum_probs=205.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.+++||+-|+|+|||||...||..-|.|.....-+ |+.+.. ....|....|++|||++..+...|++.+
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk--------~rk~~~-~a~SDWM~iEkqRGISVtsSVMqF~Y~~ 80 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVK--------GRKSGK-HAKSDWMEIEKQRGISVTSSVMQFDYAD 80 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceee--------eccCCc-ccccHHHHHHHhcCceEEeeEEEeccCC
Confidence 3457899999999999999999998888776543211 111111 2245777899999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
+.+||+|||||.||...+.+.+..+|.||.||||..|+ +.||+..+..|+..++| ++-+|||||+..-+ .-
T Consensus 81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-------E~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rd-P~ 151 (528)
T COG4108 81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-------EPQTLKLFEVCRLRDIP-IFTFINKLDREGRD-PL 151 (528)
T ss_pred eEEeccCCCCccccchhHHHHHHhhheeeEEEecccCc-------cHHHHHHHHHHhhcCCc-eEEEeeccccccCC-hH
Confidence 99999999999999999999999999999999999996 47999999999999999 99999999996544 23
Q ss_pred HHHHHHHhhhhhHhhhhcCcc-----------------------------------------------------------
Q 011910 240 ERYDEIESKMTPFLKASGYNV----------------------------------------------------------- 260 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~----------------------------------------------------------- 260 (475)
+.++++.+.|.-....+.|..
T Consensus 152 ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~E 231 (528)
T COG4108 152 ELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELE 231 (528)
T ss_pred HHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHH
Confidence 445555444432222221110
Q ss_pred ----------------cCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCC---------CCCCCceEE
Q 011910 261 ----------------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---------DPNGPFRMP 315 (475)
Q Consensus 261 ----------------~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~---------~~~~~~~~~ 315 (475)
....|++.-||+++-|+..+ |..+++.-|+|.. ..+..|...
T Consensus 232 L~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~~-------------L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGF 298 (528)
T COG4108 232 LVQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDHF-------------LDALVDWAPSPRARQADTREVEPTEDKFSGF 298 (528)
T ss_pred HHHhhccccCHHHHhcCCccceEehhhhhccCHHHH-------------HHHHHhhCCCCCcccCCcCcccCCCCccceE
Confidence 01123444444444444432 2234444455531 112335555
Q ss_pred EEEEE-----ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCc
Q 011910 316 IIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 386 (475)
Q Consensus 316 v~~~~-----~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (475)
|+.+- +.+.++++.||.||.+..|+++.....++.+++..-+.+ ++.++.|.|||+++|.-.| .++.
T Consensus 299 VFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG----~~~I 374 (528)
T COG4108 299 VFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHG----TIQI 374 (528)
T ss_pred EEEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCC----ceee
Confidence 55554 357899999999999999999999999998888876654 7889999999999975444 3889
Q ss_pred eeEEecCC
Q 011910 387 GFVLSSVA 394 (475)
Q Consensus 387 G~vl~~~~ 394 (475)
||+++..+
T Consensus 375 GDT~t~Ge 382 (528)
T COG4108 375 GDTFTEGE 382 (528)
T ss_pred cceeecCc
Confidence 99998753
No 62
>PRK12740 elongation factor G; Reviewed
Probab=99.97 E-value=2.8e-29 Score=273.49 Aligned_cols=264 Identities=23% Similarity=0.310 Sum_probs=206.2
Q ss_pred EecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEEEEeC
Q 011910 88 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDA 167 (475)
Q Consensus 88 vG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~liDt 167 (475)
+||+|||||||+++|++.+|.+.... +.. ...+++|....|+++|+|+......+.+.++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~------------~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIG------------EVE-DGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCc------------ccc-CCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 69999999999999999998765321 000 12368999999999999999999999999999999999
Q ss_pred CCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHh
Q 011910 168 PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIES 247 (475)
Q Consensus 168 PGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~ 247 (475)
|||.+|...+..+++.+|++|+|||+..+.. .++..++..+...++| +++|+||+|+...++. .+.+
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~~-----~~~~ 134 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGGVE-------PQTETVWRQAEKYGVP-RIIFVNKMDRAGADFF-----RVLA 134 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCCHH-----HHHH
Confidence 9999999999999999999999999998864 5788888888889999 7889999999654321 2222
Q ss_pred hhhhHhhh-------------------------------------------------------------h----------
Q 011910 248 KMTPFLKA-------------------------------------------------------------S---------- 256 (475)
Q Consensus 248 ~l~~~l~~-------------------------------------------------------------~---------- 256 (475)
+++..+.. .
T Consensus 135 ~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~ 214 (668)
T PRK12740 135 QLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLE 214 (668)
T ss_pred HHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHC
Confidence 22221110 0
Q ss_pred --cC-------------cccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCC----------------
Q 011910 257 --GY-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP---------------- 305 (475)
Q Consensus 257 --~~-------------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~---------------- 305 (475)
.+ ....-+|++..||++|.|+..| |..++..+|.|.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsp~~~~~~~~~~~~~~~~~ 281 (668)
T PRK12740 215 GEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRL-------------LDAVVDYLPSPLEVPPVDGEDGEEGAEL 281 (668)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHH-------------HHHHHHHCCChhhcccccCCCCcccccc
Confidence 00 0012457888899999999985 334556666663
Q ss_pred -CCCCCCceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEecc
Q 011910 306 -RDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSG 378 (475)
Q Consensus 306 -~~~~~~~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~ 378 (475)
++++.|+.+.|.+++. ..|.++++||++|+|++||+|++.+.+...+|..|+.. ..++++|.||+++++. |
T Consensus 282 ~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--g 359 (668)
T PRK12740 282 APDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA--K 359 (668)
T ss_pred ccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe--c
Confidence 2446788999999874 56999999999999999999999988777777777653 5789999999999974 6
Q ss_pred CCccCCCceeEEecCC
Q 011910 379 IEEEDILSGFVLSSVA 394 (475)
Q Consensus 379 ~~~~~i~~G~vl~~~~ 394 (475)
++ .+++|++|++..
T Consensus 360 l~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 360 LK--DAATGDTLCDKG 373 (668)
T ss_pred cC--ccCCCCEEeCCC
Confidence 54 489999998754
No 63
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.97 E-value=1.2e-29 Score=280.37 Aligned_cols=290 Identities=20% Similarity=0.303 Sum_probs=203.8
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
....++||+|+||+|||||||+++|++.+|.+.... .| ..+++|...+|++||+|++.+..++.+
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~~~~ 79 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRADEAERGITIKSTGISLYY 79 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeeccCcHHHHHhCCceecceeEEEe
Confidence 466789999999999999999999999998776421 11 256789999999999999998877776
Q ss_pred C----------------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCc
Q 011910 158 E----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 221 (475)
Q Consensus 158 ~----------------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~ 221 (475)
. ++.++|||||||.+|..++.++++.+|+||+||||.+|+. .||+.++.++...++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~-------~~t~~~~~~~~~~~~p 152 (843)
T PLN00116 80 EMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR 152 (843)
T ss_pred ecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc-------ccHHHHHHHHHHCCCC
Confidence 3 6789999999999999999999999999999999999974 7999999999999999
Q ss_pred eEEEEEEccCCCCCCc------hHHHHHHHHhhhhhHhhhhc--------CcccCCeeEEEeeccccccc----------
Q 011910 222 KLLLVVNKMDDHTVNW------SKERYDEIESKMTPFLKASG--------YNVKKDVQFLPISGLMGLNM---------- 277 (475)
Q Consensus 222 ~iivviNKiD~~~~~~------~~~~~~~i~~~l~~~l~~~~--------~~~~~~~~iipiSa~~g~gi---------- 277 (475)
+|+++||||++..++ ....++.+.++++..+..++ +.|..+ .++..|++.|..+
T Consensus 153 -~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~-nv~F~s~~~~~~~~l~~~~~~y~ 230 (843)
T PLN00116 153 -PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKG-TVAFSAGLHGWAFTLTNFAKMYA 230 (843)
T ss_pred -EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCC-eeeeeecccCEEEEhHHHHHHHH
Confidence 789999999963222 13567788888874433322 100000 1111222111000
Q ss_pred ----------------------------------------------------------------cccc------------
Q 011910 278 ----------------------------------------------------------------KTRV------------ 281 (475)
Q Consensus 278 ----------------------------------------------------------------~~l~------------ 281 (475)
...+
T Consensus 231 ~~~~~~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el 310 (843)
T PLN00116 231 SKFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEK 310 (843)
T ss_pred HHhCCcHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHH
Confidence 0000
Q ss_pred --------ccCCCCCCCh-hhHHHH-hhhcCCCCC-------------------------CCCCCceEEEEEEEc--cCC
Q 011910 282 --------DKSLCPWWNG-PCLFEA-LDRIEITPR-------------------------DPNGPFRMPIIDKFK--DMG 324 (475)
Q Consensus 282 --------~~~~~~w~~g-~~l~~~-l~~l~~~~~-------------------------~~~~~~~~~v~~~~~--~~G 324 (475)
.....||+.| ..|++. ...+|.|.. +++.|+.+.|..++. ..|
T Consensus 311 ~~~~~~l~~~~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g 390 (843)
T PLN00116 311 ELMGKALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKG 390 (843)
T ss_pred hhhhHHHHHHHHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCC
Confidence 0012456655 334443 344666521 124578888888863 457
Q ss_pred e-EEEEEEEEeeEecCCeEEecCCC----Ce-----EEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCceeEE
Q 011910 325 T-VVMGKVESGSVREGDSLLVMPNK----AQ-----VKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (475)
Q Consensus 325 ~-v~~g~v~~G~l~~gd~v~i~p~~----~~-----~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (475)
. ++++||++|+|+.||.|++.+.+ .. .+|..|+.. ..++++|.||+++++ .|+.. -+.+|++|
T Consensus 391 ~~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai--~gl~~-~~~~gdTL 467 (843)
T PLN00116 391 RFFAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAM--VGLDQ-FITKNATL 467 (843)
T ss_pred eEEEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEE--Eeecc-cccCCcee
Confidence 7 79999999999999999854332 11 355555543 478999999999996 34421 23458999
Q ss_pred ecCC
Q 011910 391 SSVA 394 (475)
Q Consensus 391 ~~~~ 394 (475)
++..
T Consensus 468 ~~~~ 471 (843)
T PLN00116 468 TNEK 471 (843)
T ss_pred cCCc
Confidence 7664
No 64
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3e-30 Score=263.30 Aligned_cols=247 Identities=22% Similarity=0.351 Sum_probs=187.6
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+.+.|||+||+|+|||-|++.|... +-+.....|+|..++..+|...
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~t-------------------------------NVqegeaggitqqIgAt~fp~~ 520 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGT-------------------------------NVQEGEAGGITQQIGATYFPAE 520 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhcc-------------------------------ccccccccceeeeccccccchH
Confidence 456778999999999999999988322 1223345788888887777654
Q ss_pred C------------------eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCC
Q 011910 159 T------------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 220 (475)
Q Consensus 159 ~------------------~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i 220 (475)
+ ..+.+||||||+.|.+...+|.+.||.||||||..+|+ .+||.+.+.+++..+.
T Consensus 521 ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl-------epqtiESi~lLR~rkt 593 (1064)
T KOG1144|consen 521 NIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL-------EPQTIESINLLRMRKT 593 (1064)
T ss_pred HHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccC-------CcchhHHHHHHHhcCC
Confidence 2 23899999999999999999999999999999999995 4899999999999999
Q ss_pred ceEEEEEEccCCCCCCchH------------------HHHHHHHhhhhhHhhhhcCcc---------cCCeeEEEeeccc
Q 011910 221 TKLLLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLM 273 (475)
Q Consensus 221 ~~iivviNKiD~~~~~~~~------------------~~~~~i~~~l~~~l~~~~~~~---------~~~~~iipiSa~~ 273 (475)
| |||++||+|+. .+|.. ..|+.-.+.+...|...|++. ...+.++|+||.+
T Consensus 594 p-FivALNKiDRL-Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~s 671 (1064)
T KOG1144|consen 594 P-FIVALNKIDRL-YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAIS 671 (1064)
T ss_pred C-eEEeehhhhhh-cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccccc
Confidence 9 99999999985 56652 224444444444555556552 3457899999999
Q ss_pred ccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC---
Q 011910 274 GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--- 348 (475)
Q Consensus 274 g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~--- 348 (475)
|+||.+|+.. |.++-+............+++.|.++. .|.|+.+...+.+|.|+.||+|++++.+
T Consensus 672 GeGipdLl~l----------lv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpI 741 (1064)
T KOG1144|consen 672 GEGIPDLLLL----------LVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPI 741 (1064)
T ss_pred CCCcHHHHHH----------HHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCch
Confidence 9999997431 333333322222334567888888875 7999999999999999999999998765
Q ss_pred -------------CeEEEEEEEECCccc-------------eeeCCCCEEEEE
Q 011910 349 -------------AQVKVLAIYCDDNRV-------------RHAGPGENLRIR 375 (475)
Q Consensus 349 -------------~~~~V~si~~~~~~v-------------~~a~aG~~v~i~ 375 (475)
...||++-+.||..| +.|.||..+-+.
T Consensus 742 vTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~Vv 794 (1064)
T KOG1144|consen 742 VTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVV 794 (1064)
T ss_pred hHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEEe
Confidence 256899988887655 456667766653
No 65
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1e-29 Score=255.84 Aligned_cols=275 Identities=23% Similarity=0.280 Sum_probs=213.4
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+.+||+|+.|.+||||||..+.||..|.+..-.. . .|+ ...||+...||.||+||+.+..++.|.
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~e-------v-~~~-----~a~md~m~~er~rgITiqSAAt~~~w~ 102 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGE-------V-RGG-----GATMDSMELERQRGITIQSAATYFTWR 102 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccc-------c-ccC-----ceeeehHHHHHhcCceeeeceeeeeec
Confidence 357889999999999999999999999887553210 0 111 347999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
+++++|||||||.+|.-++.++++.-|+||+|+|+..|+ +.||...+++++..++| .|.+|||||+.+++.-
T Consensus 103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV-------qsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV-------ESQTETVWRQMKRYNVP-RICFINKMDRMGASPF 174 (721)
T ss_pred cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce-------ehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChH
Confidence 999999999999999999999999999999999999997 48999999999999999 6789999999776532
Q ss_pred HHHHHHHHhhhh-----------------------------------------------------------hHhhhh---
Q 011910 239 KERYDEIESKMT-----------------------------------------------------------PFLKAS--- 256 (475)
Q Consensus 239 ~~~~~~i~~~l~-----------------------------------------------------------~~l~~~--- 256 (475)
. .++.+...+. ..+...
T Consensus 175 ~-~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~ 253 (721)
T KOG0465|consen 175 R-TLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDET 253 (721)
T ss_pred H-HHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 1 1111111111 000000
Q ss_pred ---------cCc-------------ccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCC--------
Q 011910 257 ---------GYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR-------- 306 (475)
Q Consensus 257 ---------~~~-------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~-------- 306 (475)
... ...-+|++.-||++..|+..+ |...++.+|.|..
T Consensus 254 l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPl-------------LDAVvdYLPsP~Ev~n~a~~k 320 (721)
T KOG0465|consen 254 LAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPL-------------LDAVVDYLPSPSEVENYALNK 320 (721)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchH-------------HHHHHHhCCChhhhccccccc
Confidence 000 022357888899999999886 4556777776521
Q ss_pred ------------CCC-CCceEEEEEEEcc-CCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCC
Q 011910 307 ------------DPN-GPFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGP 368 (475)
Q Consensus 307 ------------~~~-~~~~~~v~~~~~~-~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~a 368 (475)
..+ .||....+....+ .|...+.||++|+|+.||.|+....+++++|..+.+. .++|+++.|
T Consensus 321 e~~~~ekv~l~~~~d~~Pfv~LAFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~A 400 (721)
T KOG0465|consen 321 ETNSKEKVTLSPSRDKDPFVALAFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLA 400 (721)
T ss_pred CCCCccceEeccCCCCCceeeeEEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhc
Confidence 112 2676666665544 4999999999999999999999999999999888665 478999999
Q ss_pred CCEEEEEeccCCccCCCceeEEecC
Q 011910 369 GENLRIRLSGIEEEDILSGFVLSSV 393 (475)
Q Consensus 369 G~~v~i~l~~~~~~~i~~G~vl~~~ 393 (475)
|++|+ |-|+ ++..||++.+.
T Consensus 401 G~I~a--lfGi---dcasGDTftd~ 420 (721)
T KOG0465|consen 401 GDICA--LFGI---DCASGDTFTDK 420 (721)
T ss_pred cceee--eecc---ccccCceeccC
Confidence 99999 4565 68899999987
No 66
>PTZ00416 elongation factor 2; Provisional
Probab=99.96 E-value=9.4e-29 Score=272.80 Aligned_cols=153 Identities=20% Similarity=0.314 Sum_probs=130.5
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
...++||+|+||+|||||||+++|++.+|.+... ..|. .+++|..++|++||+|++.+...+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK----------NAGD-----ARFTDTRADEQERGITIKSTGISLYYE 80 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eeecccchhhHhhcceeeccceEEEee
Confidence 5678899999999999999999999999876542 1221 456899999999999999988777775
Q ss_pred ----------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 159 ----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 159 ----------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
++.++|+|||||.+|..++.++++.+|+||+|||+.+|+. .|++.++..+...++| +|+++|
T Consensus 81 ~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~-------~~t~~~~~~~~~~~~p-~iv~iN 152 (836)
T PTZ00416 81 HDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC-------VQTETVLRQALQERIR-PVLFIN 152 (836)
T ss_pred cccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC-------ccHHHHHHHHHHcCCC-EEEEEE
Confidence 6789999999999999999999999999999999999975 6999999999999998 889999
Q ss_pred ccCCCCCCch------HHHHHHHHhhhhhHhh
Q 011910 229 KMDDHTVNWS------KERYDEIESKMTPFLK 254 (475)
Q Consensus 229 KiD~~~~~~~------~~~~~~i~~~l~~~l~ 254 (475)
|||+...++. ...++.+.++++..+.
T Consensus 153 K~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 153 KVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred ChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999533222 4678888888887765
No 67
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=1.5e-28 Score=230.57 Aligned_cols=172 Identities=23% Similarity=0.319 Sum_probs=143.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC----
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 158 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 158 (475)
+||+++||+|||||||+++|++.+|.+..+. .| ..+++|....|++||+|++.+..++.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL----------AG-----KARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc----------CC-----ceeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 5899999999999999999999988765432 11 1468999999999999999987766655
Q ss_pred ------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 159 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
++.++|||||||.+|..++..+++.+|++|||||+.+|.. .++++++..+...++| +|+|+||||+
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~-------~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVC-------VQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 7889999999999999999999999999999999999964 6899999999989998 8999999998
Q ss_pred C------CCCchHHHHHHHHhhhhhHhhhhcCcc-----cCC--e-e----EEEeeccccccc
Q 011910 233 H------TVNWSKERYDEIESKMTPFLKASGYNV-----KKD--V-Q----FLPISGLMGLNM 277 (475)
Q Consensus 233 ~------~~~~~~~~~~~i~~~l~~~l~~~~~~~-----~~~--~-~----iipiSa~~g~gi 277 (475)
. ...+.+.++..+.+++..+++...-.. ... + | ++..||+.|+.+
T Consensus 138 ~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 138 LILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred chhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 4 345678889999999999888763110 001 1 2 677899999987
No 68
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-29 Score=236.31 Aligned_cols=329 Identities=21% Similarity=0.319 Sum_probs=251.1
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 157 (475)
.+..+||+.+||+.|||||++.++. |.- +-..+.|-+|++||+.++.....
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiS---Gv~-------------------------TvrFK~ELERNITIKLGYANAKIY 86 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAIS---GVH-------------------------TVRFKNELERNITIKLGYANAKIY 86 (466)
T ss_pred heeeeeecceeccccCcceeeeeec---cce-------------------------EEEehhhhhcceeEEeccccceEE
Confidence 3567899999999999999998772 211 11234566788888887654211
Q ss_pred --C----------------------------------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccc
Q 011910 158 --E----------------------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 201 (475)
Q Consensus 158 --~----------------------------------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~ 201 (475)
+ -+.+.|+|+|||.-.+.+|+.|+...|+++|+|.+++..
T Consensus 87 kc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC---- 162 (466)
T KOG0466|consen 87 KCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC---- 162 (466)
T ss_pred ecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC----
Confidence 0 134899999999999999999999999999999999876
Q ss_pred cCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 202 FEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 202 ~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.++||.||+.....+.++|++++-||+|+...+...+.+ +++..|++.... .+.|++|+||--+.|++.+
T Consensus 163 --PQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~----e~I~kFi~~t~a---e~aPiiPisAQlkyNId~v- 232 (466)
T KOG0466|consen 163 --PQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQALEQH----EQIQKFIQGTVA---EGAPIIPISAQLKYNIDVV- 232 (466)
T ss_pred --CCCchhhHHHHHHHhhhceEEEEechhhhhhHHHHHHHH----HHHHHHHhcccc---CCCceeeehhhhccChHHH-
Confidence 369999999999999999999999999995443333333 344445554332 3679999999999999863
Q ss_pred ccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEEEeeEecCCeEEecCCCC--
Q 011910 282 DKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA-- 349 (475)
Q Consensus 282 ~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~~~----------~~G~v~~g~v~~G~l~~gd~v~i~p~~~-- 349 (475)
..-+...+|.|.++...|.++.|..+|. -.|-|+.|.+..|.|++||.+.+.|+-.
T Consensus 233 ------------~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~k 300 (466)
T KOG0466|consen 233 ------------CEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTK 300 (466)
T ss_pred ------------HHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeee
Confidence 2335678999999999999999999982 2588999999999999999999999741
Q ss_pred ----e-------EEEEEEEECCccceeeCCCCEEEEEec---cCCccCCCceeEEecCCCCcccccEEEEEEEEeeccc-
Q 011910 350 ----Q-------VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD- 414 (475)
Q Consensus 350 ----~-------~~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~~- 414 (475)
. .+|.|++..+..++.|.||..+++..+ .+.+.|-..|.||...+..|....+++...++|..+-
T Consensus 301 d~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllg 380 (466)
T KOG0466|consen 301 DENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLG 380 (466)
T ss_pred cCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhc
Confidence 1 245566667889999999999998655 2334444578899888888888888888877764221
Q ss_pred ----------c-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEE
Q 011910 415 ----------N-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 465 (475)
Q Consensus 415 ----------~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~ 465 (475)
+ ..+..|-..++++|+....++|..+..-+ ++.....|-|...|+.+
T Consensus 381 vrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~d~----~k~~Lt~P~CteigEki 438 (466)
T KOG0466|consen 381 VRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKADM----AKIQLTSPVCTEIGEKI 438 (466)
T ss_pred cccccccccchhhhcccCcEEEEEecccccCceEEEEecce----eeeEecCchhcccchhh
Confidence 1 45668888999999999999998875422 34444567777766643
No 69
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.4e-27 Score=234.99 Aligned_cols=290 Identities=22% Similarity=0.317 Sum_probs=209.4
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 157 (475)
.+.++|+.++.|+|||||||.+.|+...|.+... ..| ..+++|++++|++||+||+.+..++-.
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a----------kaG-----e~Rf~DtRkDEQeR~iTIKStAISl~~e 80 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA----------KAG-----ETRFTDTRKDEQERGITIKSTAISLFFE 80 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeec----------ccC-----CccccccccchhhcceEeeeeeeeehhh
Confidence 5678899999999999999999999888876532 112 256899999999999999998877432
Q ss_pred ---------------CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCce
Q 011910 158 ---------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 222 (475)
Q Consensus 158 ---------------~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~ 222 (475)
.+..+++||.|||.+|..++.++++..|+|++|||+.+|++ -||+..+.++....+.
T Consensus 81 ~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvC-------VQTETVLrQA~~ERIk- 152 (842)
T KOG0469|consen 81 MSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-------VQTETVLRQAIAERIK- 152 (842)
T ss_pred hhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceE-------echHHHHHHHHHhhcc-
Confidence 35679999999999999999999999999999999999997 6999999999999998
Q ss_pred EEEEEEccCCCC--CCchH----HHHHHHHhhhhhHhhhhcCcccCCeeEEE-------eeccccccccc----------
Q 011910 223 LLLVVNKMDDHT--VNWSK----ERYDEIESKMTPFLKASGYNVKKDVQFLP-------ISGLMGLNMKT---------- 279 (475)
Q Consensus 223 iivviNKiD~~~--~~~~~----~~~~~i~~~l~~~l~~~~~~~~~~~~iip-------iSa~~g~gi~~---------- 279 (475)
-++++||||+.- ..+++ +.|+.+.+.+...+...|..+-.++.+.| .|+++|+++.-
T Consensus 153 Pvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~K 232 (842)
T KOG0469|consen 153 PVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKK 232 (842)
T ss_pred ceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHH
Confidence 568999999821 11222 23444445454445444443333344433 57888876531
Q ss_pred -------cc---------ccCCCCCCC-----------------------------------------------------
Q 011910 280 -------RV---------DKSLCPWWN----------------------------------------------------- 290 (475)
Q Consensus 280 -------l~---------~~~~~~w~~----------------------------------------------------- 290 (475)
+. ..+.-+|..
T Consensus 233 F~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~k 312 (842)
T KOG0469|consen 233 FGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEK 312 (842)
T ss_pred hCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccc
Confidence 00 001122321
Q ss_pred ------------------hhhHHHHhh-hcCCC-------------------------CCCCCCCceEEEEEEEc--cCC
Q 011910 291 ------------------GPCLFEALD-RIEIT-------------------------PRDPNGPFRMPIIDKFK--DMG 324 (475)
Q Consensus 291 ------------------g~~l~~~l~-~l~~~-------------------------~~~~~~~~~~~v~~~~~--~~G 324 (475)
+.+|++.+. .+|+| .+++++|+.|+|....+ ++|
T Consensus 313 d~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkg 392 (842)
T KOG0469|consen 313 DLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKG 392 (842)
T ss_pred cccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCc
Confidence 334444332 24444 35678999999999884 678
Q ss_pred eE-EEEEEEEeeEecCCeEEecCCC------CeEEEEEEEE-------CCccceeeCCCCEEEEEeccCCccCCCceeEE
Q 011910 325 TV-VMGKVESGSVREGDSLLVMPNK------AQVKVLAIYC-------DDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (475)
Q Consensus 325 ~v-~~g~v~~G~l~~gd~v~i~p~~------~~~~V~si~~-------~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (475)
+. ++|||++|.+..|+++++..-+ ....+++|++ .-++++.+.+|.+++ |-|++..-++.|-+-
T Consensus 393 RFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiG--lvGvDqfLvKtGTiT 470 (842)
T KOG0469|consen 393 RFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIG--LVGVDQFLVKTGTIT 470 (842)
T ss_pred eEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEE--EeehhHhhhccCcee
Confidence 86 8999999999999999996544 1223444443 458999999999999 567777777777665
Q ss_pred ecC
Q 011910 391 SSV 393 (475)
Q Consensus 391 ~~~ 393 (475)
...
T Consensus 471 t~e 473 (842)
T KOG0469|consen 471 TSE 473 (842)
T ss_pred ehh
Confidence 543
No 70
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.95 E-value=8.4e-26 Score=248.94 Aligned_cols=231 Identities=23% Similarity=0.371 Sum_probs=171.2
Q ss_pred hhhhcceEEeeeeeEEeeCC------------------eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccc
Q 011910 140 EERIKGKTVEVGRAHFETET------------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 201 (475)
Q Consensus 140 ~e~~~g~ti~~~~~~~~~~~------------------~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~ 201 (475)
.+..+|||++++.+.+.++. ..++|+|||||..|...+.++++.+|+++||+|+..|..
T Consensus 488 ~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~--- 564 (1049)
T PRK14845 488 KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFK--- 564 (1049)
T ss_pred cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCC---
Confidence 34468999999998887652 128999999999999988888999999999999998854
Q ss_pred cCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch---------------HHHHHHHHhh---hhhHhhhhcCcc---
Q 011910 202 FEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS---------------KERYDEIESK---MTPFLKASGYNV--- 260 (475)
Q Consensus 202 ~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~---------------~~~~~~i~~~---l~~~l~~~~~~~--- 260 (475)
.|+.+++..+...++| +|+|+||+|+.. +|. +..++++.+. +...|...|+.+
T Consensus 565 ----~qT~e~I~~lk~~~iP-iIVViNKiDL~~-~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~ 638 (1049)
T PRK14845 565 ----PQTIEAINILRQYKTP-FVVAANKIDLIP-GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRF 638 (1049)
T ss_pred ----HhHHHHHHHHHHcCCC-EEEEEECCCCcc-ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhh
Confidence 6999999999999998 999999999842 343 1223333222 222356666542
Q ss_pred ------cCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhh-cC-CCCCCCCCCceEEEEEEE--ccCCeEEEEE
Q 011910 261 ------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGK 330 (475)
Q Consensus 261 ------~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~-l~-~~~~~~~~~~~~~v~~~~--~~~G~v~~g~ 330 (475)
...+++||+||++|+|+.+|... |..+.+. +. ....+.+.++++.|.+++ +|.|++++|.
T Consensus 639 ~~~~d~~~~v~iVpVSA~tGeGId~Ll~~----------l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~i 708 (1049)
T PRK14845 639 DRVQDFTRTVAIVPVSAKTGEGIPELLMM----------VAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAI 708 (1049)
T ss_pred hhhhhcCCCceEEEEEcCCCCCHHHHHHH----------HHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEE
Confidence 24689999999999999986431 2111111 11 123446789999999998 6889999999
Q ss_pred EEEeeEecCCeEEecCCCC--eEEEEEEEEC------------CccceeeCCCCEEEEEeccCCccCCCceeEEe
Q 011910 331 VESGSVREGDSLLVMPNKA--QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (475)
Q Consensus 331 v~~G~l~~gd~v~i~p~~~--~~~V~si~~~------------~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (475)
|.+|+|++||.|+++|.+. ..+|+++... ..++++|.|+.-|.+...|++. +..|+-+.
T Consensus 709 v~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~--~~aG~~~~ 781 (1049)
T PRK14845 709 IYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEE--VLAGSPIR 781 (1049)
T ss_pred EEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccc--cCCCCeEE
Confidence 9999999999999999764 7899999742 2467788888877775555543 34555543
No 71
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.94 E-value=1.2e-25 Score=211.86 Aligned_cols=192 Identities=26% Similarity=0.395 Sum_probs=146.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccch------HHHHHHHHHHhhcCccchhhhhhccCchhhh----hcceEEeeeee
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDD------RTIQKYEKEAKDKSRESWYMAYIMDTNEEER----IKGKTVEVGRA 153 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~------~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~----~~g~ti~~~~~ 153 (475)
+|+++|+.++|||||+++|.. +..+. ..+.++.++. +.|++++...+++++...++ ..+.+......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~~~~~~~~~~~~~~~E~-~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDNGRGKARLNLFRHKHEV-ESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIE 77 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCCCCCeEEeehhhhhhhh-hcCchhhhhhhhcccCCCCceecCCCCccccccce
Confidence 488999999999999999953 33332 2344444444 47888888787776665433 12233333334
Q ss_pred EEeeCCeeEEEEeCCCCcCcHHHHhhccc--cCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 154 HFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 154 ~~~~~~~~~~liDtPGh~~f~~~~~~~~~--~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
.++..++.++|+|||||.+|.+++++++. .+|++++|||+.+|.. .++++++..+..+++| +|+|+||+|
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-------~~d~~~l~~l~~~~ip-~ivvvNK~D 149 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-------GMTKEHLGLALALNIP-VFVVVTKID 149 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 46677899999999999999999999986 7999999999999864 6999999999999999 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCc--------------------ccCCeeEEEeecccccccccccccCCCCCCCh
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 291 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~--------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g 291 (475)
+. ++.++....+++..+|+..|+. ....+|++++||.+|+|+++
T Consensus 150 ~~----~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~------------ 213 (224)
T cd04165 150 LA----PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDL------------ 213 (224)
T ss_pred cc----CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHH------------
Confidence 83 3556778888888888755433 12345999999999999997
Q ss_pred hhHHHHhhhcCCC
Q 011910 292 PCLFEALDRIEIT 304 (475)
Q Consensus 292 ~~l~~~l~~l~~~ 304 (475)
|.++|..+|++
T Consensus 214 --L~~~L~~lp~~ 224 (224)
T cd04165 214 --LHAFLNLLPLR 224 (224)
T ss_pred --HHHHHHhcCCC
Confidence 67788888753
No 72
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6e-25 Score=226.30 Aligned_cols=177 Identities=21% Similarity=0.340 Sum_probs=142.1
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
....++||+++.|+|||||||.+.|+...|.+..+...+ -++||++++|+.||||++.+..++..
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagk---------------irfld~redeq~rgitmkss~is~~~ 69 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGK---------------IRFLDTREDEQTRGITMKSSAISLLH 69 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccc---------------eeeccccchhhhhceeeecccccccc
Confidence 456789999999999999999999999999887765322 35799999999999999999999888
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC-
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN- 236 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~- 236 (475)
.++.++|||+|||.||..+..++++.||+++++||+.+|++ .||...++++-..|.+ .|+||||||+....
T Consensus 70 ~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~-------~qt~~vlrq~~~~~~~-~~lvinkidrl~~el 141 (887)
T KOG0467|consen 70 KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVC-------SQTYAVLRQAWIEGLK-PILVINKIDRLITEL 141 (887)
T ss_pred CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccc-------hhHHHHHHHHHHccCc-eEEEEehhhhHHHHH
Confidence 99999999999999999999999999999999999999987 7999999999999998 88999999952111
Q ss_pred --chHHHH---HHHHhhhhhHhh-------------------hhcCcccCCeeEEEeecccccccc
Q 011910 237 --WSKERY---DEIESKMTPFLK-------------------ASGYNVKKDVQFLPISGLMGLNMK 278 (475)
Q Consensus 237 --~~~~~~---~~i~~~l~~~l~-------------------~~~~~~~~~~~iipiSa~~g~gi~ 278 (475)
..++.| -.+.++++..+. ..-|++. +-.++..||..|+|+.
T Consensus 142 ~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~-kgNVif~~A~~~~~f~ 206 (887)
T KOG0467|consen 142 KLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPE-DGNVIFASALDGWGFG 206 (887)
T ss_pred hcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCC-CCcEEEEEeccccccc
Confidence 122233 333444444333 1112332 3368889999998773
No 73
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.93 E-value=1e-25 Score=217.97 Aligned_cols=174 Identities=26% Similarity=0.302 Sum_probs=141.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
||+++||+|||||||+++|++.+|.+.... +. ...++++|+.+.|++||+|++.....+.+.+++++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g------------~v-~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIG------------EV-HGGGATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccc------------cc-cCCccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 799999999999999999999988765311 10 01266899999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~ 243 (475)
|+|||||.+|..++.++++.+|++|+|||+..|+. .++++++..+...++| +++++||+|+..++ ++
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~-----~~ 134 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVE-------PQTETVWRQADRYNVP-RIAFVNKMDRTGAD-----FF 134 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-----HH
Confidence 99999999999999999999999999999999863 6899999999999999 77899999995443 34
Q ss_pred HHHhhhhhHhhhhcCcccCCeeEEEeecccc-cccccccccCCCCC
Q 011910 244 EIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRVDKSLCPW 288 (475)
Q Consensus 244 ~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g-~gi~~l~~~~~~~w 288 (475)
.+.++++..+.... ...++|+|+..+ .|+.++.....+.|
T Consensus 135 ~~~~~l~~~l~~~~-----~~~~~Pisa~~~f~g~vd~~~~~a~~~ 175 (270)
T cd01886 135 RVVEQIREKLGANP-----VPLQLPIGEEDDFRGVVDLIEMKALYW 175 (270)
T ss_pred HHHHHHHHHhCCCc-----eEEEeccccCCCceEEEEccccEEEec
Confidence 45566665554332 236799999765 47777665444445
No 74
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=1.9e-25 Score=208.08 Aligned_cols=157 Identities=27% Similarity=0.359 Sum_probs=123.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC----
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 158 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 158 (475)
+||+++||+|||||||+.+|.. ..+|....|.++|+|+..+...+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~----------------------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG----------------------------VWTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC----------------------------CCCCCCCeeEEcCCceeecccccccccccC
Confidence 4899999999999999999821 12566678888888888876665543
Q ss_pred -----------------------C------eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH
Q 011910 159 -----------------------T------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 209 (475)
Q Consensus 159 -----------------------~------~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~ 209 (475)
+ ++++|||||||.+|..++..++..+|++|+|||+..+.. ..++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~------~~~t~ 126 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCP------QPQTS 126 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCC------CcchH
Confidence 3 789999999999999999999999999999999997521 25788
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 210 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 210 ~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+++..+...+++++|+|+||+|+.. ...+....+.++.+++.... ..++++++||++|.|+.++
T Consensus 127 ~~l~~~~~~~~~~iiivvNK~Dl~~----~~~~~~~~~~i~~~~~~~~~---~~~~i~~vSA~~g~gi~~L 190 (203)
T cd01888 127 EHLAALEIMGLKHIIIVQNKIDLVK----EEQALENYEQIKKFVKGTIA---ENAPIIPISAQLKYNIDVL 190 (203)
T ss_pred HHHHHHHHcCCCcEEEEEEchhccC----HHHHHHHHHHHHHHHhcccc---CCCcEEEEeCCCCCCHHHH
Confidence 8998888888877999999999942 22344444555555554322 2468999999999999985
No 75
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=5.1e-25 Score=203.53 Aligned_cols=163 Identities=26% Similarity=0.452 Sum_probs=127.0
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC----
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 158 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 158 (475)
+||+++|++|+|||||+++|+...+ .+.+|....|+++|+|++.....+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 4799999999999999999954311 234677778889999999988777665
Q ss_pred ----------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 159 ----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 159 ----------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
++.++|+|||||.+|...+..++..+|++++|+|+..|.. .++.+++..+...+.| +++|+|
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~N 128 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQ-------TQTAECLVIGEILCKK-LIVVLN 128 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEE
Confidence 6789999999999999999999999999999999998753 4677777777777887 899999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
|+|+....+.+..++++.+.+...+...++. .++++|+||++|.|+.+|
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L 177 (192)
T cd01889 129 KIDLIPEEERERKIEKMKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAEL 177 (192)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHH
Confidence 9999533323333445555444444443432 568999999999999984
No 76
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.92 E-value=2.2e-24 Score=205.09 Aligned_cols=144 Identities=33% Similarity=0.460 Sum_probs=121.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
||+++||+|+|||||+++|++.+|.+... |+.. ...+++|....|++||+|+......+.+.+.+++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~------------g~v~-~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKL------------GSVD-KGTTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccc------------cccc-CCcccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 79999999999999999999998876532 1111 1235789999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~ 243 (475)
|+|||||.+|...+..+++.+|++|+|+|+..|.. .++++++..+...++| +++++||+|+..+++ ...++
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~-------~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~-~~~~~ 138 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQ-------AQTRILWRLLRKLNIP-TIIFVNKIDRAGADL-EKVYQ 138 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccccCCCH-HHHHH
Confidence 99999999999999999999999999999999853 5889999999999999 788999999976664 34555
Q ss_pred HHHhhh
Q 011910 244 EIESKM 249 (475)
Q Consensus 244 ~i~~~l 249 (475)
++++.+
T Consensus 139 ~i~~~~ 144 (237)
T cd04168 139 EIKEKL 144 (237)
T ss_pred HHHHHH
Confidence 554443
No 77
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.92 E-value=5.7e-24 Score=199.73 Aligned_cols=165 Identities=20% Similarity=0.322 Sum_probs=132.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC----
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 158 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 158 (475)
+||+++||+|+|||||+++|++..+....+ |+.....++++|....|+++|+|+......+.+.
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 589999999999999999999888765431 2333445677899999999999999888777553
Q ss_pred -CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC---
Q 011910 159 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT--- 234 (475)
Q Consensus 159 -~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~--- 234 (475)
.+.++|+|||||.+|...+..++..+|++|+|+|+.++.. .++++++..+...+.| +++|+||+|+..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 140 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVT-------SNTERLIRHAILEGLP-IVLVINKIDRLILEL 140 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECcccCcccc
Confidence 4789999999999999999999999999999999998853 4667777777777888 899999999841
Q ss_pred ---CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEe
Q 011910 235 ---VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPI 269 (475)
Q Consensus 235 ---~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipi 269 (475)
..+..+++.++.+++..+++..++++ .+.++|+
T Consensus 141 ~l~~~~~~~~l~~~i~~~n~~~~~~~~~~--~~~~~p~ 176 (213)
T cd04167 141 KLPPNDAYFKLRHIIDEVNNIIASFSTTL--SFLFSPE 176 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCC--ceEeccC
Confidence 12345678889999999998887752 3445554
No 78
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=7.2e-24 Score=196.14 Aligned_cols=171 Identities=27% Similarity=0.337 Sum_probs=135.5
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
+++|+++|++++|||||+++|++..+.+..... ...+++|..+.|+.+|+|+......+.+.+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE---------------VEERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc---------------ccccccccchhHHhcccccccceeEEEECCEE
Confidence 579999999999999999999876665443210 01356788888999999999988888899999
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHH
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 241 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~ 241 (475)
++|+|||||.+|...+...++.+|++++|+|+..+.+ .+++.++..+...++| +++|+||+|+... +
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~-----~ 133 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPDA-----R 133 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCC-----C
Confidence 9999999999999999999999999999999998753 4677777777778999 8899999999432 3
Q ss_pred HHHHHhhhhhHhhhhcCcc-cCCeeEEEeecccccccccc
Q 011910 242 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 242 ~~~i~~~l~~~l~~~~~~~-~~~~~iipiSa~~g~gi~~l 280 (475)
+....+++..+++.++... ..+++++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 3445555666665544331 12568999999999999875
No 79
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.3e-25 Score=213.17 Aligned_cols=277 Identities=21% Similarity=0.281 Sum_probs=197.8
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+++||+|+.|+|+||||...+++|..|.+..-. .--.+..++|+...||+||+|++.+...|.|.
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g-------------~vddgdtvtdfla~erergitiqsaav~fdwk 100 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG-------------DVDDGDTVTDFLAIERERGITIQSAAVNFDWK 100 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhccc-------------ccCCCchHHHHHHHHHhcCceeeeeeeecccc
Confidence 35678999999999999999999999988654311 11123457899999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++++++||||||.+|.-++.+.++.-|++|.|+|++.|+ +.||...++++.++++| -++++||||...++|.
T Consensus 101 g~rinlidtpghvdf~leverclrvldgavav~dasagv-------e~qtltvwrqadk~~ip-~~~finkmdk~~anfe 172 (753)
T KOG0464|consen 101 GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGV-------EAQTLTVWRQADKFKIP-AHCFINKMDKLAANFE 172 (753)
T ss_pred cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCc-------ccceeeeehhccccCCc-hhhhhhhhhhhhhhhh
Confidence 999999999999999999999999999999999999997 37999999999999999 5689999998665543
Q ss_pred HHHHHHHHhhhhh-------------------------------------------------------------------
Q 011910 239 KERYDEIESKMTP------------------------------------------------------------------- 251 (475)
Q Consensus 239 ~~~~~~i~~~l~~------------------------------------------------------------------- 251 (475)
. ..+.+.+.+..
T Consensus 173 ~-avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~q 251 (753)
T KOG0464|consen 173 N-AVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQ 251 (753)
T ss_pred h-HHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 1 11122111110
Q ss_pred -----------HhhhhcCc------------------ccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcC
Q 011910 252 -----------FLKASGYN------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE 302 (475)
Q Consensus 252 -----------~l~~~~~~------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~ 302 (475)
+|.++.-+ ..+.+++..-||++..|+..|++ ..--.+|
T Consensus 252 lad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplld-------------avtmylp 318 (753)
T KOG0464|consen 252 LADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLD-------------AVTMYLP 318 (753)
T ss_pred HhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhh-------------hhhhccC
Confidence 00000000 02334677778888888876532 2222355
Q ss_pred CCCCCCCC-------CceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCC
Q 011910 303 ITPRDPNG-------PFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPG 369 (475)
Q Consensus 303 ~~~~~~~~-------~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG 369 (475)
.|...... .+....+.+. +.+|..++.|+++|+|+.+-.|....+..+-.+..+... +..++++.||
T Consensus 319 speernyeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsag 398 (753)
T KOG0464|consen 319 SPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAG 398 (753)
T ss_pred ChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccc
Confidence 54322211 1111112222 457999999999999999999998877776666665442 5678899999
Q ss_pred CEEEEEeccCCccCCCceeEEecCC
Q 011910 370 ENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 370 ~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
.+.-. .|+.. -.+||+++...
T Consensus 399 nialt--~glk~--tatgdtivask 419 (753)
T KOG0464|consen 399 NIALT--AGLKH--TATGDTIVASK 419 (753)
T ss_pred cEEEE--eccee--eccCCeEEecc
Confidence 88653 34433 56788887654
No 80
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=2.8e-23 Score=189.17 Aligned_cols=163 Identities=23% Similarity=0.394 Sum_probs=123.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-----
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET----- 157 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~----- 157 (475)
+||+++|++++|||||+++|++..+.+..+.. ..+++++...++.+|+|.......+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM----------------KEQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC----------------ceEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 58999999999999999999887776543210 134678888889999998877655533
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.+..++|+|||||.+|...+..+++.+|++|+|+|+..+.. .++.+++..+...++| +++|+||+|+....
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~- 135 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-------AQTLANFYLALENNLE-IIPVINKIDLPSAD- 135 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-------HhhHHHHHHHHHcCCC-EEEEEECCCCCcCC-
Confidence 46779999999999999999999999999999999988743 3666777776677888 89999999984321
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.....+++.. .+++. ...++++||++|.|+.++
T Consensus 136 ----~~~~~~~~~~---~~~~~---~~~~~~~Sa~~g~gi~~l 168 (179)
T cd01890 136 ----PERVKQQIED---VLGLD---PSEAILVSAKTGLGVEDL 168 (179)
T ss_pred ----HHHHHHHHHH---HhCCC---cccEEEeeccCCCCHHHH
Confidence 1222223322 23332 235899999999999986
No 81
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.89 E-value=7.7e-23 Score=197.73 Aligned_cols=138 Identities=27% Similarity=0.404 Sum_probs=116.5
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
.+||+++||+|||||||+++|++.+|.+...... .++. .....++|+...|++||+|+......+.+.+..
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v--------~~~~-~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAV--------KARK-SRKHATSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCcee--------cccc-cCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 5899999999999999999999999887643210 0000 112346899999999999999999999999999
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
++|||||||.+|...+..+++.+|++|+|+|+..|.. .++...+..+...++| +++++||||+..++
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-------~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~ 139 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-------PQTRKLFEVCRLRGIP-IITFINKLDREGRD 139 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-------HHHHHHHHHHHhcCCC-EEEEEECCccCCCC
Confidence 9999999999999999999999999999999998853 5788888888888999 88999999995543
No 82
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=6.3e-22 Score=177.11 Aligned_cols=156 Identities=28% Similarity=0.480 Sum_probs=118.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-CeeE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRF 162 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~~ 162 (475)
+|+++|++|+|||||+++|.... .+....+..+++|+......+.+. +..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~----------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE----------------------------TDRLPEEKKRGITIDLGFAYLDLPSGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc----------------------------cccchhhhccCceEEeeeEEEEecCCcEE
Confidence 68999999999999999994210 112233445778888877777776 7899
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 242 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~ 242 (475)
.+|||||+.+|...+..+++.+|++++|+|+.++.. .++.+++..+...+.+++++|+||+|+.. ...+
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-------~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~----~~~~ 122 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-------PQTREHLEILELLGIKRGLVVLTKADLVD----EDWL 122 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-------HhHHHHHHHHHHhCCCcEEEEEECccccC----HHHH
Confidence 999999999999888888999999999999988643 47777777777778744999999999943 2233
Q ss_pred HHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 243 ~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
....+++...++..++. ..+++++||++|.|+.+++
T Consensus 123 ~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 123 ELVEEEIRELLAGTFLA---DAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred HHHHHHHHHHHHhcCcC---CCcEEEEeCCCCcCHHHHH
Confidence 44455555666553322 4689999999999999853
No 83
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=4.4e-21 Score=175.78 Aligned_cols=170 Identities=31% Similarity=0.524 Sum_probs=131.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|.+|+|||||+++|+........... ...+.++....+..+++|+......+...+..++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGT---------------VEETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCc---------------eecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 5899999999999999999766554322110 0113456666788889999888888888899999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~ 243 (475)
|+||||+.+|...+...++.+|++++|+|+.++.. .+.++.+..+...+.| +++|+||+|+.. +..+.
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~-i~iv~nK~D~~~----~~~~~ 133 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQ-------PQTREHLRIAREGGLP-IIVAINKIDRVG----EEDLE 133 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCc-------HHHHHHHHHHHHCCCC-eEEEEECCCCcc----hhcHH
Confidence 99999999999999899999999999999998753 4677777777777888 999999999943 23445
Q ss_pred HHHhhhhhHhhhhcCc--------ccCCeeEEEeecccccccccc
Q 011910 244 EIESKMTPFLKASGYN--------VKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 244 ~i~~~l~~~l~~~~~~--------~~~~~~iipiSa~~g~gi~~l 280 (475)
...+++...++..+.. .....+++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l 178 (189)
T cd00881 134 EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence 5566666666655431 013578999999999999985
No 84
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.86 E-value=5.3e-21 Score=185.96 Aligned_cols=132 Identities=23% Similarity=0.380 Sum_probs=112.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
||+++||+|+|||||+++|++..|.+... |.- ....+++|..+.|+.+++|+......+.+.++.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~------------g~v-~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRL------------GSV-EDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccC------------Cee-cCCcccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 68999999999999999999877764322 111 12346789999999999999999899999999999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
|||||||.+|...+..+++.+|++|+|+|+..|.. .++...+..+...++| +++|+||+|+...+
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~-------~~~~~~~~~~~~~~~p-~iivvNK~D~~~~~ 132 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSGVE-------VGTEKLWEFADEAGIP-RIIFINKMDRERAD 132 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCccCCCC
Confidence 99999999999999999999999999999999853 5788888888889999 77899999986554
No 85
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.83 E-value=1e-19 Score=163.72 Aligned_cols=155 Identities=30% Similarity=0.403 Sum_probs=109.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC---C
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~ 159 (475)
+.|+++|++++|||||+++|..... . .....++|.......+... +
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~--~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV--A-----------------------------AGEAGGITQHIGAFEVPAEVLKI 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc--c-----------------------------cccCCCeEEeeccEEEecccCCc
Confidence 3589999999999999999942211 0 1122456666665556654 7
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
..++|+||||+..|...+..++..+|++++|+|+..+.. .++.+.+..+...++| +++|+||+|+... ..
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~--~~ 119 (168)
T cd01887 50 PGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVM-------PQTIEAIKLAKAANVP-FIVALNKIDKPNA--NP 119 (168)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEEceecccc--cH
Confidence 889999999999998888888899999999999998753 4777888888888998 8999999998432 22
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..+......+..... ..+ ...++++++||++|.|+.++.
T Consensus 120 ~~~~~~~~~~~~~~~-~~~--~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 120 ERVKNELSELGLQGE-DEW--GGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred HHHHHHHHHhhcccc-ccc--cCcCcEEEeecccCCCHHHHH
Confidence 222222221111100 011 124689999999999999853
No 86
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=7.6e-20 Score=160.93 Aligned_cols=144 Identities=22% Similarity=0.309 Sum_probs=98.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|.+|+|||||+|+|......+ .. -.|.|++.....+.+.+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v---------------------~n----------~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV---------------------GN----------WPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE---------------------EE----------STTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee---------------------cC----------CCCCCeeeeeEEEEecCceE
Confidence 479999999999999999994432211 11 27899998888899999999
Q ss_pred EEEeCCCCcCcH----HHHhh--c--cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 163 TILDAPGHKSYV----PNMIS--G--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 163 ~liDtPGh~~f~----~~~~~--~--~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
.|+|+||..++. .+.+. . ...+|++|+|+||+.- .+..+.+.++..+|+| +|+|+||||...
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---------~r~l~l~~ql~e~g~P-~vvvlN~~D~a~ 119 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---------ERNLYLTLQLLELGIP-VVVVLNKMDEAE 119 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---------HHHHHHHHHHHHTTSS-EEEEEETHHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---------HHHHHHHHHHHHcCCC-EEEEEeCHHHHH
Confidence 999999965441 22221 1 2579999999999863 3556677778889999 999999999821
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
. .. +.-....+-+.+ .+|++|+||.+|.|+++|
T Consensus 120 ~----~g---~~id~~~Ls~~L------g~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 120 R----KG---IEIDAEKLSERL------GVPVIPVSARTGEGIDEL 152 (156)
T ss_dssp H----TT---EEE-HHHHHHHH------TS-EEEEBTTTTBTHHHH
T ss_pred H----cC---CEECHHHHHHHh------CCCEEEEEeCCCcCHHHH
Confidence 1 11 111112222233 358999999999999985
No 87
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=2.1e-19 Score=178.97 Aligned_cols=157 Identities=24% Similarity=0.341 Sum_probs=133.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
..+.|||+|.||+|||||+|+|+.....+... ..|.|.+.-...++++++
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~------------------------------~aGTTRD~I~~~~e~~~~ 226 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD------------------------------IAGTTRDSIDIEFERDGR 226 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC------------------------------CCCccccceeeeEEECCe
Confidence 56899999999999999999997766554432 378999999999999999
Q ss_pred eEEEEeCCCCcC----------c-HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEc
Q 011910 161 RFTILDAPGHKS----------Y-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (475)
Q Consensus 161 ~~~liDtPGh~~----------f-~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNK 229 (475)
.|.||||.|.++ | +..+..++..||+++||+||.+|.. .|..+.+.++...|.+ +|+|+||
T Consensus 227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-------~qD~~ia~~i~~~g~~-~vIvvNK 298 (444)
T COG1160 227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-------EQDLRIAGLIEEAGRG-IVIVVNK 298 (444)
T ss_pred EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-------HHHHHHHHHHHHcCCC-eEEEEEc
Confidence 999999999543 2 3445567889999999999999976 5999999999999999 8999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 230 iD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+|+. +-++..++..+.++...|..++|. +++++||++|.|+.++++
T Consensus 299 WDl~--~~~~~~~~~~k~~i~~~l~~l~~a-----~i~~iSA~~~~~i~~l~~ 344 (444)
T COG1160 299 WDLV--EEDEATMEEFKKKLRRKLPFLDFA-----PIVFISALTGQGLDKLFE 344 (444)
T ss_pred cccC--CchhhHHHHHHHHHHHHhccccCC-----eEEEEEecCCCChHHHHH
Confidence 9984 334567888888999888888775 899999999999998765
No 88
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=4e-19 Score=177.03 Aligned_cols=145 Identities=21% Similarity=0.240 Sum_probs=115.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
+.|||+|.+|+|||||+|+|+...-.+.. | ..|+|.+..+....|.++.|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~------------------------D------~pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS------------------------D------TPGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEee------------------------c------CCCCccCCccceeEEcCceE
Confidence 67999999999999999999655443332 2 37999999999999999999
Q ss_pred EEEeCCCCcCc---------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCC
Q 011910 163 TILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 163 ~liDtPGh~~f---------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~ 233 (475)
.+|||+|.... ...+..++..||++|||||+..|++ ...++....++..+.| +|+|+||+|-.
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git-------~~D~~ia~~Lr~~~kp-viLvvNK~D~~ 125 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT-------PADEEIAKILRRSKKP-VILVVNKIDNL 125 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEcccCc
Confidence 99999998642 2234456779999999999999986 5888888999877788 99999999973
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. +.....+.++|+. .++|+||.+|.|+.+|.
T Consensus 126 ~~-----------e~~~~efyslG~g-----~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 126 KA-----------EELAYEFYSLGFG-----EPVPISAEHGRGIGDLL 157 (444)
T ss_pred hh-----------hhhHHHHHhcCCC-----CceEeehhhccCHHHHH
Confidence 11 1122245567776 78999999999999973
No 89
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79 E-value=6.1e-19 Score=158.59 Aligned_cols=156 Identities=23% Similarity=0.252 Sum_probs=102.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|+.|+|||||+++|....... .+. .......|+......+.+.+..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~--------------~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY--------------KGL-------------PPSKITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc--------------cCC-------------cccccCCccccceEEEEECCEEEE
Confidence 68999999999999999985432210 000 000123344444455667789999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCCCchH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~~~~~ 239 (475)
++|||||..|...+...++.+|++++|+|+..... + ......+..+. ..++| +++++||+|+....
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~--- 123 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRER---F---EESKSALEKVLRNEALEGVP-LLILANKQDLPDAL--- 123 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEEccccccCC---
Confidence 99999999998888888899999999999976521 1 12222332222 24788 99999999985431
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
...++.+.+.......+. ..++++++||++|.|+.++
T Consensus 124 -~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 124 -SVEEIKEVFQDKAEEIGR---RDCLVLPVSALEGTGVREG 160 (167)
T ss_pred -CHHHHHHHhccccccccC---CceEEEEeeCCCCcCHHHH
Confidence 222333333333322222 2568999999999999885
No 90
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=1.3e-18 Score=180.97 Aligned_cols=156 Identities=24% Similarity=0.321 Sum_probs=119.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++|+|||||+++|++....+ .....|.|.+.....+.+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 220 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVI------------------------------VSDIAGTTRDSIDTPFERDG 220 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceEEEEEEEEEECC
Confidence 346899999999999999999996433211 11236788887777788889
Q ss_pred eeEEEEeCCCCcCc-----------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 160 TRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 160 ~~~~liDtPGh~~f-----------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
..+.++||||+.+. ...+..+++.+|++|+|+|+..|.. .+..+.+.++...+.| +|+|+|
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~-------~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999997543 1234557789999999999999864 5788888888888888 899999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+. ..+..+++.+.+...+.... .++++++||++|.|+.++++
T Consensus 293 K~Dl~----~~~~~~~~~~~~~~~l~~~~-----~~~i~~~SA~~~~gv~~l~~ 337 (435)
T PRK00093 293 KWDLV----DEKTMEEFKKELRRRLPFLD-----YAPIVFISALTGQGVDKLLE 337 (435)
T ss_pred CccCC----CHHHHHHHHHHHHHhccccc-----CCCEEEEeCCCCCCHHHHHH
Confidence 99994 23345566666665555432 46899999999999998765
No 91
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=1.2e-18 Score=180.83 Aligned_cols=157 Identities=23% Similarity=0.286 Sum_probs=119.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|++|+|||||+++|+.....+ .....|.|.+.....+...+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 219 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVI------------------------------VSDIAGTTRDSIDIPFERNG 219 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeee------------------------------cCCCCCceECcEeEEEEECC
Confidence 345789999999999999999996432211 11235777777767777888
Q ss_pred eeEEEEeCCCCcCcHH-----------HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 160 TRFTILDAPGHKSYVP-----------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~-----------~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
..+.|+||||+.++.. .+..+++.||++|+|+|+.+|.+ .+..+.+..+...+.| +|+|+|
T Consensus 220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~N 291 (429)
T TIGR03594 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT-------EQDLRIAGLILEAGKA-LVIVVN 291 (429)
T ss_pred cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 8999999999865532 23456789999999999999865 4777888888888888 999999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+. + ..+.++.+.+.+...+...+ .++++++||++|.|+.++++
T Consensus 292 K~Dl~--~-~~~~~~~~~~~~~~~~~~~~-----~~~vi~~SA~~g~~v~~l~~ 337 (429)
T TIGR03594 292 KWDLV--K-DEKTREEFKKELRRKLPFLD-----FAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred CcccC--C-CHHHHHHHHHHHHHhcccCC-----CCceEEEeCCCCCCHHHHHH
Confidence 99994 1 34556667777766655443 45899999999999998754
No 92
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=5.7e-18 Score=152.42 Aligned_cols=155 Identities=23% Similarity=0.272 Sum_probs=105.8
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
.++|+++|++|+|||||+++|+....... ....+.+.......+...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV------------------------------SDIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec------------------------------cCCCCCccCceeeEEEECCee
Confidence 46899999999999999999954321110 012344444444556667888
Q ss_pred EEEEeCCCCcCcH-----------HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEcc
Q 011910 162 FTILDAPGHKSYV-----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (475)
Q Consensus 162 ~~liDtPGh~~f~-----------~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKi 230 (475)
+.+|||||+.+.. ......+..+|++++|+|+..+.. .+....+..+...+.| +++++||+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~ 123 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLILEEGKA-LVIVVNKW 123 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcc-------hhHHHHHHHHHhcCCC-EEEEEecc
Confidence 9999999975441 223445678999999999988753 2445556666667877 89999999
Q ss_pred CCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
|+... .....+.+.+.+...+... ...+++++||++|.|+.++.
T Consensus 124 Dl~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~ 167 (174)
T cd01895 124 DLVEK--DSKTMKEFKKEIRRKLPFL-----DYAPIVFISALTGQGVDKLF 167 (174)
T ss_pred ccCCc--cHHHHHHHHHHHHhhcccc-----cCCceEEEeccCCCCHHHHH
Confidence 99432 2234445555555444322 13589999999999998853
No 93
>COG1159 Era GTPase [General function prediction only]
Probab=99.76 E-value=1e-17 Score=158.52 Aligned_cols=153 Identities=22% Similarity=0.200 Sum_probs=104.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.--|||+|.+|+|||||+|+|++..-.+..+. ...|...-..-+..++
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k------------------------------~QTTR~~I~GI~t~~~ 53 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK------------------------------PQTTRNRIRGIVTTDN 53 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC------------------------------cchhhhheeEEEEcCC
Confidence 4556799999999999999999987665443321 1122222223345678
Q ss_pred eeEEEEeCCCCc-------Cc-HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 160 TRFTILDAPGHK-------SY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 160 ~~~~liDtPGh~-------~f-~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
.++.|+||||.. ++ .+....++..+|++++|||+.++.. ...+..+..++..+.| +|+++||+|
T Consensus 54 ~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~-------~~d~~il~~lk~~~~p-vil~iNKID 125 (298)
T COG1159 54 AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWG-------PGDEFILEQLKKTKTP-VILVVNKID 125 (298)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCC-------ccHHHHHHHHhhcCCC-eEEEEEccc
Confidence 999999999942 12 3444556789999999999999753 4566677777776778 889999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+...+ ..+..+.+.+ -....| ..++|+||++|.|+..|.
T Consensus 126 ~~~~~---~~l~~~~~~~---~~~~~f-----~~ivpiSA~~g~n~~~L~ 164 (298)
T COG1159 126 KVKPK---TVLLKLIAFL---KKLLPF-----KEIVPISALKGDNVDTLL 164 (298)
T ss_pred cCCcH---HHHHHHHHHH---HhhCCc-----ceEEEeeccccCCHHHHH
Confidence 84321 1122222222 222233 279999999999999864
No 94
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.76 E-value=1.1e-17 Score=162.72 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=95.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
.|+++|++|+|||||+++|+.....+.. ...+.|...........+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs------------------------------~~~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS------------------------------PKAQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC------------------------------CCCCcccCcEEEEEEcCCcEEE
Confidence 5899999999999999999643221100 0122232222222334567899
Q ss_pred EEeCCCCcCc--------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCC
Q 011910 164 ILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 164 liDtPGh~~f--------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~ 235 (475)
|+||||+... ...+..++..+|++++|+|+..+.. .....+..+...+.| +++|+||+|+.
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~~~i~~~l~~~~~p-~ilV~NK~Dl~-- 120 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DGEFVLTKLQNLKRP-VVLTRNKLDNK-- 120 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hHHHHHHHHHhcCCC-EEEEEECeeCC--
Confidence 9999997542 2234456789999999999987642 224455566667888 89999999993
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+ .. .+.+.+..+....++ .+++|+||++|.|++++.+
T Consensus 121 ~--~~---~~~~~~~~~~~~~~~-----~~v~~iSA~~g~gi~~L~~ 157 (270)
T TIGR00436 121 F--KD---KLLPLIDKYAILEDF-----KDIVPISALTGDNTSFLAA 157 (270)
T ss_pred C--HH---HHHHHHHHHHhhcCC-----CceEEEecCCCCCHHHHHH
Confidence 2 11 122233333333222 2799999999999998643
No 95
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=1.1e-17 Score=148.39 Aligned_cols=142 Identities=21% Similarity=0.237 Sum_probs=100.1
Q ss_pred EEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEEEE
Q 011910 86 VFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTIL 165 (475)
Q Consensus 86 ~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~li 165 (475)
+++|++|+|||||+++|+...... .+...+.|...........+..+.++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI------------------------------VEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe------------------------------ecCCCCceeCceeEEEEECCeEEEEE
Confidence 589999999999999995321100 01123455555556667778999999
Q ss_pred eCCCCcCcHH--------HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 166 DAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 166 DtPGh~~f~~--------~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
||||+.++.. .....++.+|++++|+|+..+.. ....+.+..++..+.| +++|+||+|+...
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-------~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~-- 120 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT-------PADEEIAKYLRKSKKP-VILVVNKVDNIKE-- 120 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC-------ccHHHHHHHHHhcCCC-EEEEEECcccCCh--
Confidence 9999988644 34456778999999999987643 3455666777777888 9999999999432
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
... ...+...++ .+++++|+++|.|+++++
T Consensus 121 ~~~---------~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 121 EDE---------AAEFYSLGF-----GEPIPISAEHGRGIGDLL 150 (157)
T ss_pred HHH---------HHHHHhcCC-----CCeEEEecccCCCHHHHH
Confidence 111 112333333 268999999999999863
No 96
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=1.8e-17 Score=151.28 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=103.6
Q ss_pred cCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 77 ~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
......++|+++|++|+|||||+++|...... . . .....|.|.....+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~----------------------~------~~~~~~~t~~~~~~~~- 62 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKL-A----------------------R------TSKTPGRTQLINFFEV- 62 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c----------------------c------ccCCCCcceEEEEEEe-
Confidence 33466789999999999999999998532110 0 0 0011344544433322
Q ss_pred eCCeeEEEEeCCCCc----------CcHHH---HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceE
Q 011910 157 TETTRFTILDAPGHK----------SYVPN---MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKL 223 (475)
Q Consensus 157 ~~~~~~~liDtPGh~----------~f~~~---~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~i 223 (475)
+ ..+.|+||||+. .|... .++....+|++++|+|+..+.. ....+.+..+...+.| +
T Consensus 63 -~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~-------~~~~~~~~~~~~~~~p-v 132 (179)
T TIGR03598 63 -N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK-------ELDLEMLEWLRERGIP-V 132 (179)
T ss_pred -C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-E
Confidence 2 379999999963 23222 2233345789999999988753 4666667777778888 8
Q ss_pred EEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccc
Q 011910 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 278 (475)
Q Consensus 224 ivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~ 278 (475)
++|+||+|+.. ....+...++++..++..+. +.+++++||++|+|++
T Consensus 133 iiv~nK~D~~~----~~~~~~~~~~i~~~l~~~~~----~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 133 LIVLTKADKLK----KSELNKQLKKIKKALKKDAD----DPSVQLFSSLKKTGID 179 (179)
T ss_pred EEEEECcccCC----HHHHHHHHHHHHHHHhhccC----CCceEEEECCCCCCCC
Confidence 99999999942 23445566667777766532 3589999999999974
No 97
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=1.5e-17 Score=149.45 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=97.7
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 159 (475)
..++|+++|+.|+|||||+++|+. +.... +.......+.....+...+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 50 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS--GTFSE-----------------------------RQGNTIGVDFTMKTLEIEGK 50 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh--CCCcc-----------------------------cCCCccceEEEEEEEEECCE
Confidence 347899999999999999999842 21110 0001111222233344444
Q ss_pred -eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCC
Q 011910 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 -~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~ 235 (475)
..+.|+||||+..|...+...++.+|++++|+|+..... |. .....+..+.. .++| +|+|+||+|+...
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~ 123 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSS---FE---SVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQ 123 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 578999999999998888788889999999999988642 11 22233333332 3677 8999999998432
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. +. ..++...+.+..+ ...++++||++|.|+.+++
T Consensus 124 ~--~~----~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~~ 158 (165)
T cd01864 124 R--EV----LFEEACTLAEKNG-----MLAVLETSAKESQNVEEAF 158 (165)
T ss_pred c--cc----CHHHHHHHHHHcC-----CcEEEEEECCCCCCHHHHH
Confidence 1 11 1122223333332 2368999999999999863
No 98
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=3e-17 Score=170.51 Aligned_cols=144 Identities=20% Similarity=0.252 Sum_probs=107.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
.|+++|++|+|||||+++|+.....+ .....|+|.+.......+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VSDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------------------------ecCCCCcccCceEEEEEECCeEEE
Confidence 48999999999999999995332111 111257777777777888899999
Q ss_pred EEeCCCCc--------CcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCC
Q 011910 164 ILDAPGHK--------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 164 liDtPGh~--------~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~ 235 (475)
|+||||+. .+...+..++..+|++++|+|+..|.. ....+.+..++..+.| +++|+||+|+...
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~-------~~d~~i~~~l~~~~~p-iilVvNK~D~~~~ 122 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLT-------PEDEEIAKWLRKSGKP-VILVANKIDGKKE 122 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHhCCC-EEEEEECccCCcc
Confidence 99999973 344556667889999999999998864 4667777888888888 9999999998432
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+.. . ..+..+|+. +++++||.+|.|+.+++
T Consensus 123 ~~~-------~----~~~~~lg~~-----~~~~vSa~~g~gv~~ll 152 (429)
T TIGR03594 123 DAV-------A----AEFYSLGFG-----EPIPISAEHGRGIGDLL 152 (429)
T ss_pred ccc-------H----HHHHhcCCC-----CeEEEeCCcCCChHHHH
Confidence 210 0 113344543 68999999999999863
No 99
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=2.9e-17 Score=145.95 Aligned_cols=141 Identities=20% Similarity=0.229 Sum_probs=96.0
Q ss_pred EEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEEEEe
Q 011910 87 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILD 166 (475)
Q Consensus 87 ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~liD 166 (475)
++|+.|+|||||+++|..... ......++|+......+.+.+..+.|+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-------------------------------KVGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-------------------------------cccCCCCcccccceEEEeeCCeEEEEEE
Confidence 589999999999999842210 0011256777776667778888999999
Q ss_pred CCCCcCcHHH------Hhhcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 167 APGHKSYVPN------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 167 tPGh~~f~~~------~~~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
|||+.+|... +...+ ..+|++|+|+|+.... +....+..+...++| +|+|+||+|+......
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---------~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~ 119 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE---------RNLYLTLQLLELGLP-VVVALNMIDEAEKRGI 119 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch---------hHHHHHHHHHHcCCC-EEEEEehhhhcccccc
Confidence 9999877532 22223 4899999999998642 333444555667888 8999999999433211
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
......+.+.+ ..+++++||.+|.|+.+++
T Consensus 120 -------~~~~~~~~~~~------~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 120 -------KIDLDKLSELL------GVPVVPTSARKGEGIDELK 149 (158)
T ss_pred -------hhhHHHHHHhh------CCCeEEEEccCCCCHHHHH
Confidence 11122222332 2479999999999999854
No 100
>PRK15494 era GTPase Era; Provisional
Probab=99.73 E-value=4.5e-17 Score=163.06 Aligned_cols=152 Identities=22% Similarity=0.283 Sum_probs=100.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|++|+|||||+++|+.....+. ....+.|.......+..++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv------------------------------s~k~~tTr~~~~~~~~~~~ 99 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV------------------------------TPKVQTTRSIITGIITLKD 99 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeec------------------------------cCCCCCccCcEEEEEEeCC
Confidence 4557999999999999999999954321110 0112334333334456678
Q ss_pred eeEEEEeCCCCcCc--------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 160 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 160 ~~~~liDtPGh~~f--------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
.++.|+||||..+. .+....++..||++|+|||+..+.. ......+..+...+.| .|+|+||+|
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~-------~~~~~il~~l~~~~~p-~IlViNKiD 171 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFD-------DITHNILDKLRSLNIV-PIFLLNKID 171 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEhhc
Confidence 89999999997432 2222345779999999999887632 3445566666777888 578999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+... .... +..++...+ ....++|+||++|.|++++++
T Consensus 172 l~~~-----~~~~----~~~~l~~~~----~~~~i~~iSAktg~gv~eL~~ 209 (339)
T PRK15494 172 IESK-----YLND----IKAFLTENH----PDSLLFPISALSGKNIDGLLE 209 (339)
T ss_pred Cccc-----cHHH----HHHHHHhcC----CCcEEEEEeccCccCHHHHHH
Confidence 8421 1222 223333221 124799999999999998643
No 101
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.72 E-value=4.5e-17 Score=131.19 Aligned_cols=87 Identities=28% Similarity=0.512 Sum_probs=82.4
Q ss_pred CCCceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCc
Q 011910 309 NGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 386 (475)
Q Consensus 309 ~~~~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (475)
+.||||+|.++|+ +.|++++|+|.+|.|+.||+|.++|.+..++|++|+.++.+++.|.||+.|+|+|++++..++++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~ 81 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR 81 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence 4689999999994 68999999999999999999999999999999999999999999999999999999998899999
Q ss_pred eeEEecCCC
Q 011910 387 GFVLSSVAK 395 (475)
Q Consensus 387 G~vl~~~~~ 395 (475)
||+|+++++
T Consensus 82 G~vl~~~~~ 90 (91)
T cd03693 82 GDVAGDSKN 90 (91)
T ss_pred cCEEccCCC
Confidence 999999764
No 102
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=3.9e-17 Score=171.00 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=109.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
..++|+++|++|+|||||+++|+.....+ .....|.|.+.....+...+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------------------------~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------------------------VDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCccCCcceEEEEECCE
Confidence 45899999999999999999995432110 111356676666666777888
Q ss_pred eEEEEeCCCCcC---------cHHHH--hhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEc
Q 011910 161 RFTILDAPGHKS---------YVPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (475)
Q Consensus 161 ~~~liDtPGh~~---------f~~~~--~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNK 229 (475)
.+.|+||||..+ |...+ ..++..+|++|+|+|+..+.. .+....+..+...+.| +|+|+||
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s-------~~~~~~~~~~~~~~~p-iIiV~NK 331 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS-------EQDQRVLSMVIEAGRA-LVLAFNK 331 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEC
Confidence 999999999632 22222 234678999999999999864 3566667777777888 9999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 230 iD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+|+... .....+..++...+.... ..+++++||++|.|+.+++.
T Consensus 332 ~Dl~~~----~~~~~~~~~i~~~l~~~~-----~~~~~~~SAk~g~gv~~lf~ 375 (472)
T PRK03003 332 WDLVDE----DRRYYLEREIDRELAQVP-----WAPRVNISAKTGRAVDKLVP 375 (472)
T ss_pred cccCCh----hHHHHHHHHHHHhcccCC-----CCCEEEEECCCCCCHHHHHH
Confidence 999431 222333344444343322 35899999999999998765
No 103
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=3.5e-17 Score=148.40 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=97.0
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
..++|+++|+.++|||||+++|... ... . ...|+......+...+.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~~----------------------------~----~~~t~g~~~~~~~~~~~ 58 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DID----------------------------T----ISPTLGFQIKTLEYEGY 58 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCC----------------------------C----cCCccccceEEEEECCE
Confidence 3468999999999999999998432 000 0 00111112233445678
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHH----HHcCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~----~~~~i~~iivviNKiD~~~~~ 236 (475)
.+.++||||+..|...+...++.+|++++|+|+..... | ......+..+ ...+.| +++|+||+|+....
T Consensus 59 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 131 (173)
T cd04154 59 KLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR---L---DDCKRELKELLQEERLAGAT-LLILANKQDLPGAL 131 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC
Confidence 89999999999887777777889999999999987621 1 1222222222 224667 89999999995321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. .++ +..+++..... ...++++++||++|.|+.+++
T Consensus 132 -~---~~~----~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 132 -S---EEE----IREALELDKIS-SHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred -C---HHH----HHHHhCccccC-CCceEEEeccCCCCcCHHHHH
Confidence 1 112 22222221111 135689999999999999853
No 104
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.71 E-value=1.8e-16 Score=141.98 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=96.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|+.++|||||+.+|+.... ... .....+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY--EPQ---------------------------QLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCC---------------------------cCCceeeEEEEEEEEECCEEEEE
Confidence 4689999999999999999853211 000 00011222222222233344678
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCCCchHH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~~~~~~ 240 (475)
.|+||||+..|.......++.+|++|+|+|+..+.. + ....+.+..++.. ++| +++|+||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~----- 119 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT---Y---KNLSKWYEELREYRPEIP-CIVVANKIDLDPS----- 119 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCc-EEEEEECccCchh-----
Confidence 999999999998888888999999999999987643 1 1233444444443 677 8999999998311
Q ss_pred HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 241 ~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ..+...+.... .++++++||++|.|+.++++
T Consensus 120 ~----~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 120 V----TQKKFNFAEKH------NLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred H----HHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 1 11112222222 35899999999999998643
No 105
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.71 E-value=6.8e-17 Score=144.30 Aligned_cols=150 Identities=21% Similarity=0.205 Sum_probs=94.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|..++|||||+++|........ ....|+......+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~--------------------------------~~~~t~g~~~~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ--------------------------------IIVPTVGFNVESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc--------------------------------eecCccccceEEEEECCEEEE
Confidence 589999999999999999843110000 000111111223456788899
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH------HcCCceEEEEEEccCCCCCCc
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~------~~~i~~iivviNKiD~~~~~~ 237 (475)
++||||+.+|...+...+..+|++|+|+|+..+.. + ......+..+. ..++| +++|+||+|+....
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 120 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR---L---VVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL- 120 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH---H---HHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-
Confidence 99999999998888888899999999999987531 1 12222232221 13677 89999999995332
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
...++...+. +... . ...++++++||++|.|+++++
T Consensus 121 ---~~~~~~~~l~--~~~~--~-~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 121 ---TAVKITQLLG--LENI--K-DKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred ---CHHHHHHHhC--Cccc--c-CceEEEEEeeCCCCCchHHHH
Confidence 1112221111 0110 1 123578999999999999863
No 106
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=9.9e-17 Score=167.93 Aligned_cols=148 Identities=24% Similarity=0.279 Sum_probs=105.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
..++|+|+|.+|+|||||+++|+.....+ .....|+|.+.....+.+.+.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------------------------v~~~~gvT~d~~~~~~~~~~~ 86 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAV------------------------------VEDVPGVTRDRVSYDAEWNGR 86 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccc------------------------------ccCCCCCCEeeEEEEEEECCc
Confidence 34789999999999999999995322110 112357777777777788889
Q ss_pred eEEEEeCCCCcC--------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 161 RFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 161 ~~~liDtPGh~~--------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.|+||||+.. |...+..++..||++|+|+|+..+.. ....+.+..++..+.| +|+|+||+|+
T Consensus 87 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s-------~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 87 RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT-------ATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 999999999863 33344556789999999999998854 2345566667777888 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... . + .. .+...++. ..+++||++|.|+.++++
T Consensus 159 ~~~~--~----~----~~-~~~~~g~~-----~~~~iSA~~g~gi~eL~~ 192 (472)
T PRK03003 159 ERGE--A----D----AA-ALWSLGLG-----EPHPVSALHGRGVGDLLD 192 (472)
T ss_pred Cccc--h----h----hH-HHHhcCCC-----CeEEEEcCCCCCcHHHHH
Confidence 4321 1 0 11 12233443 347999999999999743
No 107
>PRK00089 era GTPase Era; Reviewed
Probab=99.70 E-value=2.7e-16 Score=154.92 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=97.6
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+...|+++|++|+|||||+++|+.....+.. .. .+.|.......+...+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs------------------------~~------~~tt~~~i~~i~~~~~~ 53 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVS------------------------PK------PQTTRHRIRGIVTEDDA 53 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecC------------------------CC------CCcccccEEEEEEcCCc
Confidence 4567999999999999999999643221110 00 11111111112233557
Q ss_pred eEEEEeCCCCcCc--------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 161 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 161 ~~~liDtPGh~~f--------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
++.|+||||+.+. ......++..+|++++|+|+..+.. ....+.+..+...+.| +++|+||+|+
T Consensus 54 qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~-------~~~~~i~~~l~~~~~p-vilVlNKiDl 125 (292)
T PRK00089 54 QIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG-------PGDEFILEKLKKVKTP-VILVLNKIDL 125 (292)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------hhHHHHHHHHhhcCCC-EEEEEECCcC
Confidence 8999999997543 2344456788999999999988532 3455666666666788 8899999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. .........+.+ .+..+ ..+++|+||++|.|+.++.
T Consensus 126 ~~---~~~~l~~~~~~l---~~~~~-----~~~i~~iSA~~~~gv~~L~ 163 (292)
T PRK00089 126 VK---DKEELLPLLEEL---SELMD-----FAEIVPISALKGDNVDELL 163 (292)
T ss_pred CC---CHHHHHHHHHHH---HhhCC-----CCeEEEecCCCCCCHHHHH
Confidence 42 112222222222 22222 3479999999999999864
No 108
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.70 E-value=1.5e-16 Score=143.27 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=91.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe-eE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT-RF 162 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~-~~ 162 (475)
+|+++|++|+|||||+++|......+. ...+.|.......+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA-------------------------------DYPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc-------------------------------CCCccccCCcceEEEcCCCCeE
Confidence 699999999999999999942111000 0112333333334455555 89
Q ss_pred EEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCCC-ccccccCCCcchHHHHHHHHH-----cCCceEEEEEEc
Q 011910 163 TILDAPGHKS-------YVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNK 229 (475)
Q Consensus 163 ~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~g-~~e~~~~~~~~t~~~l~~~~~-----~~i~~iivviNK 229 (475)
.|+||||+.+ +...+.+.+..+|++++|+|+..+ ... ......+..+.. .+.| +++|+||
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~------~~~~~~~~~l~~~~~~~~~~p-~ivv~NK 123 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPV------EDYKTIRNELELYNPELLEKP-RIVVLNK 123 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHH------HHHHHHHHHHHHhCccccccc-cEEEEEc
Confidence 9999999742 344445556679999999999876 211 122222333332 2566 8899999
Q ss_pred cCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 230 iD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+|+.... .. .+.+..++... ...+++++||++|.|+.+++
T Consensus 124 ~Dl~~~~----~~---~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 163 (170)
T cd01898 124 IDLLDEE----EL---FELLKELLKEL-----WGKPVFPISALTGEGLDELL 163 (170)
T ss_pred hhcCCch----hh---HHHHHHHHhhC-----CCCCEEEEecCCCCCHHHHH
Confidence 9984321 11 11222223221 13579999999999999863
No 109
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.70 E-value=1.5e-16 Score=125.61 Aligned_cols=82 Identities=71% Similarity=1.149 Sum_probs=79.0
Q ss_pred CceEEEEEEEccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEE
Q 011910 311 PFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (475)
Q Consensus 311 ~~~~~v~~~~~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (475)
||+|+|.++|+..|++++|+|.+|+|++||++.++|++..++|++|+.++.++++|.|||.|+++|++++..++++||+|
T Consensus 1 plr~~I~~v~~~~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 1 PLRLPIIDKYKDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL 80 (82)
T ss_pred CeEEEEEeEEEcCCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence 68999999998779999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred ec
Q 011910 391 SS 392 (475)
Q Consensus 391 ~~ 392 (475)
++
T Consensus 81 ~~ 82 (82)
T cd04089 81 CS 82 (82)
T ss_pred eC
Confidence 74
No 110
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.70 E-value=8.6e-17 Score=143.94 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=94.0
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|.+|+|||||+++++.... ... ... ..+... .....+......
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~------------------------~~~---t~~~~~-~~~~~~~~~~~~ 51 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTD------------------------YDP---TIEDSY-TKQCEIDGQWAI 51 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--Ccc------------------------cCC---CccceE-EEEEEECCEEEE
Confidence 36899999999999999999854221 000 000 000000 111112222356
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCc
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~ 237 (475)
+.++||||+.+|...+...+..+|++++|+|+..... |. .....+..+.. .++| +++|+||+|+....
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~- 123 (164)
T cd04145 52 LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGS---FE---EVDKFHTQILRVKDRDEFP-MILVGNKADLEHQR- 123 (164)
T ss_pred EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCC-EEEEeeCccccccc-
Confidence 8899999999998888888899999999999987532 11 12222222222 3677 89999999984321
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ...++...+++.. .++++++||++|.|+.+++
T Consensus 124 -~----~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 124 -K----VSREEGQELARKL------KIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred -e----ecHHHHHHHHHHc------CCcEEEeeCCCCCCHHHHH
Confidence 0 0111223333333 3479999999999999863
No 111
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.70 E-value=1.5e-16 Score=140.15 Aligned_cols=146 Identities=24% Similarity=0.314 Sum_probs=93.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--e
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 160 (475)
.+|+++|++|+|||||+++|+... ...+...+++.+.....+...+ .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-------------------------------FITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-------------------------------CcCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999984322 1112224556665555566666 7
Q ss_pred eEEEEeCCCCcCcHHH-------HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCC
Q 011910 161 RFTILDAPGHKSYVPN-------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~-------~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~ 233 (475)
.+.++||||+.+|... +...+...|.+++|+|+..+.. .........+. .+.| +++|+||+|+.
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~-------~~~~~~~~~~~-~~~p-~ivv~nK~D~~ 121 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILE-------KQTKEIIHHAE-SNVP-IILVGNKIDLR 121 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhH-------HHHHHHHHhcc-cCCc-EEEEEEcccCC
Confidence 8999999999999443 3334445555555555544321 12333333332 2778 89999999994
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..+ ........+...+ ..+++++||.+|.|+.+++
T Consensus 122 ~~~--------~~~~~~~~~~~~~-----~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 122 DAK--------LKTHVAFLFAKLN-----GEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred cch--------hhHHHHHHHhhcc-----CCceEEeecCCCCCHHHHH
Confidence 321 2333344444443 3469999999999998853
No 112
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.70 E-value=1.3e-16 Score=142.48 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=96.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee--CCe
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 160 (475)
.+|+++|++++|||||+++|+..... .+.....+.......+.. ...
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFK-------------------------------EDSQHTIGVEFGSKIIRVGGKRV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCceeeeEEEEEEEECCEEE
Confidence 37999999999999999999532210 000111222222222333 335
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH---HcCCceEEEEEEccCCCCCCc
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~---~~~i~~iivviNKiD~~~~~~ 237 (475)
.+.|+|||||.+|.......++.+|++|+|+|+..+..- ......+..+. ..++| +++|.||+|+....
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~- 121 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSF------EALPTWLSDARALASPNIV-VILVGNKSDLADQR- 121 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhc-
Confidence 789999999999988888888999999999999886431 12233333332 23677 89999999984211
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ...+++..+++.. .++++.+||++|.|+.+++
T Consensus 122 -~----~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 122 -E----VTFLEASRFAQEN------GLLFLETSALTGENVEEAF 154 (161)
T ss_pred -c----CCHHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 0 0112223333333 2579999999999999863
No 113
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.70 E-value=2.3e-16 Score=141.96 Aligned_cols=149 Identities=18% Similarity=0.179 Sum_probs=90.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|++|+|||||+++|...... .....+.|.......+...+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-------------------------------VAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-------------------------------cCCCCCcccceeEEEEccCceEE
Confidence 57999999999999999999432110 00112334444444455567899
Q ss_pred EEEeCCCCcCc-------H-HHHhhc-cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccC
Q 011910 163 TILDAPGHKSY-------V-PNMISG-ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMD 231 (475)
Q Consensus 163 ~liDtPGh~~f-------~-~~~~~~-~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD 231 (475)
+|+||||+.+. . ...... ...+|++|+|+|+..... +.. ....+.+..+... +.| +|+|+||+|
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~~~-~~~~~~~~~l~~~~~~~p-vilv~NK~D 124 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---YSL-EEQLSLFEEIKPLFKNKP-VIVVLNKID 124 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---cch-HHHHHHHHHHHhhcCcCC-eEEEEEccc
Confidence 99999998431 1 111112 234799999999986421 000 1122334444443 677 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+... ..... ...+.+. ...+++++||++|.|+.+++
T Consensus 125 l~~~----~~~~~----~~~~~~~------~~~~~~~~Sa~~~~gi~~l~ 160 (168)
T cd01897 125 LLTF----EDLSE----IEEEEEL------EGEEVLKISTLTEEGVDEVK 160 (168)
T ss_pred cCch----hhHHH----HHHhhhh------ccCceEEEEecccCCHHHHH
Confidence 8432 11211 2222221 24589999999999999864
No 114
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.69 E-value=1.6e-16 Score=141.76 Aligned_cols=148 Identities=21% Similarity=0.265 Sum_probs=93.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|+.++|||||+++|.. +... +. ..|+......+...+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~--~~~~-------------------------~~-------~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL--GEVV-------------------------TT-------IPTIGFNVETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc--CCCc-------------------------Cc-------CCccCcCeEEEEECCEEEE
Confidence 589999999999999999832 1100 00 0111112223445678899
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHH-HH---HcCCceEEEEEEccCCCCCCchH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AK---TLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~-~~---~~~i~~iivviNKiD~~~~~~~~ 239 (475)
|+||||+.+|...+...+..+|++|+|+|+..... + ....+.+.. +. ..+.| +++|+||+|+.....
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~-- 117 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR---L---GTAKEELHAMLEEEELKGAV-LLVFANKQDMPGALS-- 117 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCCC--
Confidence 99999999998877788899999999999986421 0 112233322 22 13677 999999999953321
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..++...+ ....+. ....+++++||++|.|+.+++
T Consensus 118 --~~~i~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 118 --EAEISEKL----GLSELK-DRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred --HHHHHHHh----CccccC-CCcEEEEEeeccCCCCHHHHH
Confidence 11222221 111111 123579999999999999863
No 115
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.69 E-value=1.1e-16 Score=146.62 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=94.6
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEE-eeCCe
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-ETETT 160 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~-~~~~~ 160 (475)
...|+++|+.|+|||||++++++.... .. ....|.+........ ...+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~---------------------------~~---~~t~~~~~~~~~~~~~~~~~~ 52 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV---------------------------NT---VPTKGFNTEKIKVSLGNSKGI 52 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC---------------------------Cc---CCccccceeEEEeeccCCCce
Confidence 467999999999999999998432110 00 001122221111111 22457
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHH
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~ 240 (475)
.+.++||||++.|...+...++.+|++|+|+|+.....-..+. ....+........+.| +++|+||+|+... ...+
T Consensus 53 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~--~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~-~~~~ 128 (183)
T cd04152 53 TFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAK--TELHKITRFSENQGVP-VLVLANKQDLPNA-LSVS 128 (183)
T ss_pred EEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHH--HHHHHHHhhhhcCCCc-EEEEEECcCcccc-CCHH
Confidence 8999999999999877777788999999999998752100000 0111222222335678 8999999998421 1111
Q ss_pred HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 241 ~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ..++....+.....++++++||++|.|+.+++.
T Consensus 129 ~~-------~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 163 (183)
T cd04152 129 EV-------EKLLALHELSASTPWHVQPACAIIGEGLQEGLE 163 (183)
T ss_pred HH-------HHHhCccccCCCCceEEEEeecccCCCHHHHHH
Confidence 11 111111111101235789999999999998754
No 116
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=2.8e-16 Score=140.50 Aligned_cols=148 Identities=20% Similarity=0.228 Sum_probs=95.9
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--e
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 160 (475)
.+|+++|++|+|||||+++|+...- . ......++.......+...+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--S-----------------------------EQYKSTIGVDFKTKTIEVDGKRV 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCceeeEEEEEEEEECCEEE
Confidence 3799999999999999999842211 0 00112223333333344444 5
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCC-C
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-N 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~-~ 236 (475)
.+.++|+||+..|.......++.+|++|+|+|+.+... ++ .....+..+.. .++| +++|+||+|+... .
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~ 122 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES---FE---NLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQ 122 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEchhcccccC
Confidence 78999999999999888888899999999999987532 11 12222223222 3567 9999999998431 1
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+.. + ....+.+.. .++++++|+.+|.|+.+++
T Consensus 123 ~~~---~----~~~~~~~~~------~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 123 VSR---E----EAEAFAEEH------GLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred CCH---H----HHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 111 1 122233333 3479999999999999863
No 117
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.69 E-value=1.8e-16 Score=141.44 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=98.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--ee
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 161 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 161 (475)
+|+++|++++|||||+++|+..... .+...+.+.+.....+..++ ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-------------------------------NQYQATIGIDFLSKTMYLEDKTVR 50 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-------------------------------ccCCCceeeeEEEEEEEECCEEEE
Confidence 6899999999999999998532111 11123444444444444444 46
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcC--CceEEEEEEccCCCCCCch
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLG--VTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~--i~~iivviNKiD~~~~~~~ 238 (475)
+.++||||+..|.......+..+|++++|+|+..+.. | ......+.... ..+ +| +++|+||+|+....
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~-- 121 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS---F---DNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKR-- 121 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCE-EEEEEEChhccccC--
Confidence 8999999999998888888899999999999987642 1 12233333332 233 77 99999999983211
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. ..++...+.+.. .++++++||++|.|+.+++
T Consensus 122 ~~----~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 122 QV----STEEGEKKAKEL------NAMFIETSAKAGHNVKELF 154 (161)
T ss_pred cc----CHHHHHHHHHHh------CCEEEEEeCCCCCCHHHHH
Confidence 11 112222222322 3579999999999999864
No 118
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.69 E-value=3.4e-16 Score=140.04 Aligned_cols=151 Identities=18% Similarity=0.221 Sum_probs=97.5
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|+.++|||||+++|+...-. . ......|.+.......+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~---------------------------~--~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFS---------------------------E--NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC---------------------------C--CCCCccceeEEEEEEEECCEEEEE
Confidence 57999999999999999999532210 0 001112222222233344445678
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCCchH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~~~~ 239 (475)
.++|+||+..|.......++.+|++|+|+|+..... | ......+..+... ++| +++++||+|+....+
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-- 123 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEES---F---EKAKSWVKELQRNASPNII-IALVGNKADLESKRQ-- 123 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccccCc--
Confidence 999999999998877777889999999999986532 1 2334444444443 366 899999999843211
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
... +++..+.... .++++++||++|.|+.+++
T Consensus 124 ~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 124 VST----EEAQEYADEN------GLLFFETSAKTGENVNELF 155 (163)
T ss_pred CCH----HHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 011 1222233333 2579999999999999863
No 119
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.68 E-value=2.3e-16 Score=142.45 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=94.9
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+..+|+++|+.++|||||+.+|.. +... .. ....|.++ ..+.....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~--~~~~-------------------------~~---~~t~g~~~----~~~~~~~~ 53 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKL--GQSV-------------------------TT---IPTVGFNV----ETVTYKNV 53 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHcc--CCCc-------------------------cc---cCCcccce----EEEEECCE
Confidence 457899999999999999999832 1100 00 00112222 23344678
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~~ 236 (475)
.+.|+||||+.+|...+...++.+|++|+|+|+..... | ....+.+.... ..+.| +++|.||+|+...
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~- 125 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---DEARQELHRIINDREMRDAL-LLVFANKQDLPDA- 125 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhh---H---HHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC-
Confidence 89999999999998877777899999999999987421 1 12233332222 23567 9999999998432
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.. .+++.. .++..... ...++++++||++|.|+.++
T Consensus 126 ~~---~~~i~~----~~~~~~~~-~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 126 MK---PHEIQE----KLGLTRIR-DRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred CC---HHHHHH----HcCCCccC-CCcEEEEEeeCCCCCChHHH
Confidence 11 122222 22111111 12357899999999999885
No 120
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.68 E-value=3.4e-16 Score=140.97 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=95.5
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|.+++|||||+++|... ..... + ....|.+.......+......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~--~f~~~---------------------~------~~t~~~~~~~~~~~~~~~~~~ 53 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED--SFNPS---------------------F------ISTIGIDFKIRTIELDGKKIK 53 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC--cCCcc---------------------c------ccCccceEEEEEEEECCEEEE
Confidence 478999999999999999998432 11100 0 000122222212222222357
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCCch
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~~~ 238 (475)
+.++||||+.+|.......+..+|++|+|+|+..+.. |. ...+.+..+.. .++| +++|.||+|+....
T Consensus 54 l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~-- 124 (167)
T cd01867 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKS---FE---NIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKR-- 124 (167)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc--
Confidence 8999999999988877777889999999999987643 21 22333333332 3567 89999999994321
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+... ++...+++.. ..+++++||++|.|+.+++
T Consensus 125 ~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 125 VVSK----EEGEALADEY------GIKFLETSAKANINVEEAF 157 (167)
T ss_pred CCCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 1111 1222233332 3479999999999999864
No 121
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.68 E-value=4.5e-16 Score=138.68 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=92.0
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|.+|+|||||+++|+... .... ..+ ..+.+. .....+......+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~~~------------------------~~~---t~~~~~-~~~~~~~~~~~~~ 51 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------YDP---TIEDSY-RKQVVIDGETCLL 51 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CcCC------------------------cCC---cchheE-EEEEEECCEEEEE
Confidence 479999999999999999995321 1000 000 000000 1111122223558
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCCCch
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~~~~ 238 (475)
.++||||+..|...+...++.+|++++|+|...... |. .....+..+. ..+.| +++|.||+|+.....
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~- 123 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKS---FE---DIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTV- 123 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccee-
Confidence 899999999998888888889999999999886432 11 1122222222 23667 899999999843211
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
...++..+.+.. .++++++||++|.|+.+++
T Consensus 124 ------~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 124 ------SSRQGQDLAKSY------GIPYIETSAKTRQGVEEAF 154 (162)
T ss_pred ------cHHHHHHHHHHh------CCeEEEecCCCCCCHHHHH
Confidence 112222333333 3479999999999999864
No 122
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.68 E-value=3.7e-16 Score=138.35 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=95.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|++|+|||||+++|........ ....+.|.......+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIV------------------------------SDIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEec------------------------------cCCCCCccceEEEEEEeCCEEE
Confidence 3689999999999999999853221100 0123555555555667778899
Q ss_pred EEEeCCCCcCcHH--------HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEEccCCC
Q 011910 163 TILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 163 ~liDtPGh~~f~~--------~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviNKiD~~ 233 (475)
+++||||+.++.. .+...+..+|++++|+|+.... +........ ..+.| +++|+||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~----------~~~~~~~~~~~~~~~-vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL----------DEEDLEILELPADKP-IIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC----------CHHHHHHHHhhcCCC-EEEEEEchhcC
Confidence 9999999977643 2334567899999999999753 222333333 34666 99999999994
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
... .. ... ....+++++||++|.|+.++.
T Consensus 121 ~~~----~~---------~~~------~~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 121 PDS----EL---------LSL------LAGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred Ccc----cc---------ccc------cCCCceEEEECCCCCCHHHHH
Confidence 321 10 011 124589999999999999853
No 123
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=4.8e-16 Score=161.71 Aligned_cols=145 Identities=20% Similarity=0.223 Sum_probs=103.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
+.|+++|++|+|||||+++|+.....+ .....|+|.+.....+.+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~------------------------------v~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------------------------eCCCCCCcccceEEEEEECCcEE
Confidence 579999999999999999994322110 01124666666666777888999
Q ss_pred EEEeCCCCcC----c----HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 163 TILDAPGHKS----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 163 ~liDtPGh~~----f----~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
.||||||+.+ + ......++..+|++|+|+|+..+.. ....+....++..+.| +|+|+||+|+..
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~-------~~~~~~~~~l~~~~~p-iilv~NK~D~~~ 123 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLT-------PADEEIAKILRKSNKP-VILVVNKVDGPD 123 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCc-EEEEEECccCcc
Confidence 9999999987 3 2334456789999999999998753 3445666777778888 999999999732
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ... +.. +..+|+. .++++||.+|.|+.+++
T Consensus 124 ~---~~~-------~~~-~~~lg~~-----~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 124 E---EAD-------AYE-FYSLGLG-----EPYPISAEHGRGIGDLL 154 (435)
T ss_pred c---hhh-------HHH-HHhcCCC-----CCEEEEeeCCCCHHHHH
Confidence 1 111 111 1233442 47999999999999863
No 124
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.68 E-value=4e-16 Score=123.52 Aligned_cols=82 Identities=62% Similarity=0.963 Sum_probs=77.8
Q ss_pred CceEEEEEEEcc-CCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeE
Q 011910 311 PFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (475)
Q Consensus 311 ~~~~~v~~~~~~-~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (475)
||+|+|.++|+. .|++++|+|.+|++++||+|.++|++..++|++|++++.++++|.|||+|+++|++++..++++||+
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v 80 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV 80 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence 689999999942 8999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred Eec
Q 011910 390 LSS 392 (475)
Q Consensus 390 l~~ 392 (475)
|++
T Consensus 81 l~~ 83 (83)
T cd03698 81 LCS 83 (83)
T ss_pred EeC
Confidence 974
No 125
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.68 E-value=4.1e-16 Score=139.23 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=95.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|++++|||||+++|+....... .....+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPD-----------------------------LAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-----------------------------cCCcccceEEEEEEEECCEEEEE
Confidence 3789999999999999999843211000 01112233322222233334678
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCch
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~~ 238 (475)
.|+||||+..|.......++.+|++|+|+|+...... + ....++..+.. .+.| +++|+||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~---~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~ 124 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTF---T---NLETWLNELETYSTNNDIV-KMLVGNKIDKENREVT 124 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHH---H---hHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccC
Confidence 9999999999987777778899999999999875321 1 12222332322 3566 8899999999522211
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ++...+.+.. .++++++||++|.|+.+++
T Consensus 125 ~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 125 R-------EEGLKFARKH------NMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred H-------HHHHHHHHHc------CCEEEEEecCCCCCHHHHH
Confidence 1 1222233322 4579999999999999863
No 126
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=2.4e-16 Score=143.18 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=96.9
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|+.++|||||+.+|.. +... . ...|+......+...+..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~--~~~~-------------------------~-------~~~t~~~~~~~~~~~~~~ 60 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLL--GEVV-------------------------H-------TSPTIGSNVEEIVYKNIR 60 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCC-------------------------C-------cCCccccceEEEEECCeE
Confidence 46899999999999999999832 1100 0 012222223345567889
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHH-HH---cCCceEEEEEEccCCCCCCc
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~-~~---~~i~~iivviNKiD~~~~~~ 237 (475)
+.|+||||+..|...+...+..+|++|+|+|++.... + ...++.+..+ .. .++| +++++||+|+... .
T Consensus 61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~---~---~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~-~ 132 (174)
T cd04153 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRER---L---PLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGA-M 132 (174)
T ss_pred EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCC-C
Confidence 9999999999998888888899999999999987531 1 1122222222 11 2467 9999999998432 1
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. .+++.+.+. ..... ...++++++||++|.|+++++
T Consensus 133 ~---~~~i~~~l~----~~~~~-~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 133 T---PAEISESLG----LTSIR-DHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred C---HHHHHHHhC----ccccc-CCceEEEecccCCCCCHHHHH
Confidence 1 122222221 00011 124689999999999999853
No 127
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.67 E-value=1.1e-15 Score=137.86 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=93.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--e
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 160 (475)
.+|+++|++++|||||+++|+...- .. .....+..+.....+...+ .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF--SN-----------------------------QYKATIGADFLTKEVTVDDKLV 49 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--Cc-----------------------------CcCCccceEEEEEEEEECCEEE
Confidence 3799999999999999999943211 00 0001111111122233333 4
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHH-HHHH------cCCceEEEEEEccCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT------LGVTKLLLVVNKMDDH 233 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~-~~~~------~~i~~iivviNKiD~~ 233 (475)
.+.++|+||+..|.......++.+|++|+|+|+..+.. +. ....... .... .++| +++|+||+|+.
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 122 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKS---FE---SLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLE 122 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCccCCCCce-EEEEEECcccc
Confidence 57899999999999888888999999999999987632 10 1111111 1111 1677 89999999995
Q ss_pred CCC-chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
..+ ... +.+..+++..+ .++++++|+++|.|+.++++
T Consensus 123 ~~~~~~~-------~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 123 EKRQVST-------KKAQQWCQSNG-----NIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred cccccCH-------HHHHHHHHHcC-----CceEEEEECCCCCCHHHHHH
Confidence 211 111 12223333332 35899999999999998643
No 128
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.67 E-value=5.4e-16 Score=169.32 Aligned_cols=146 Identities=21% Similarity=0.271 Sum_probs=103.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|++|+|||||+|+|...... .....|.|++.....+.+.+..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-------------------------------vgn~pGvTve~k~g~~~~~~~~ 51 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-------------------------------VGNWAGVTVERKEGQFSTTDHQ 51 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCceEeeEEEEEEcCceE
Confidence 468999999999999999999321110 1112688888877788889999
Q ss_pred EEEEeCCCCcCcHH--------HHhhc----cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEc
Q 011910 162 FTILDAPGHKSYVP--------NMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (475)
Q Consensus 162 ~~liDtPGh~~f~~--------~~~~~----~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNK 229 (475)
++++||||+.+|.. +.+.. ...+|++|+|+|++... +......++..+++| +++|+||
T Consensus 52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~l~~ql~e~giP-vIvVlNK 121 (772)
T PRK09554 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLYLTLQLLELGIP-CIVALNM 121 (772)
T ss_pred EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHHHHHHHHHcCCC-EEEEEEc
Confidence 99999999988742 11111 23789999999998752 334455667778999 8999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 230 iD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+|+.... .+.. .++.+-+.+ .++++|+||.+|.|++++.
T Consensus 122 ~Dl~~~~----~i~i---d~~~L~~~L------G~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 122 LDIAEKQ----NIRI---DIDALSARL------GCPVIPLVSTRGRGIEALK 160 (772)
T ss_pred hhhhhcc----CcHH---HHHHHHHHh------CCCEEEEEeecCCCHHHHH
Confidence 9984211 1111 222222333 3589999999999999854
No 129
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.67 E-value=5.1e-16 Score=139.54 Aligned_cols=151 Identities=20% Similarity=0.162 Sum_probs=96.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--C
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 159 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 159 (475)
..+|+++|..|+|||||+++|+.... .. ......+.......+... .
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTY--TE-----------------------------SYISTIGVDFKIRTIELDGKT 50 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CC-----------------------------CCCCccceeEEEEEEEECCEE
Confidence 36899999999999999999842211 00 000112222222223333 3
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~ 236 (475)
..+.++||||+.+|.......++.+|++|+|+|++.... | ....+.+..+.. .+.| +++|.||+|+....
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~ 123 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKR 123 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHH---H---HhHHHHHHHHHHhCCCCCc-EEEEEEChhccccc
Confidence 578999999999998887778889999999999987532 1 133333333333 2467 89999999984321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .++...+.+.. .++++++||++|.|+.+++.
T Consensus 124 --~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~ 157 (166)
T cd01869 124 --VVD----YSEAQEFADEL------GIPFLETSAKNATNVEQAFM 157 (166)
T ss_pred --CCC----HHHHHHHHHHc------CCeEEEEECCCCcCHHHHHH
Confidence 111 11222233332 35899999999999998643
No 130
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.67 E-value=2.2e-16 Score=142.69 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=94.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|..++|||||+.+|.... .. . ...|+......+...+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~-------------------------~-------~~~T~~~~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FM-------------------------Q-------PIPTIGFNVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CC-------------------------C-------cCCcCceeEEEEEECCEEEE
Confidence 58899999999999999984320 00 0 11122222234556788999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCchH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~~~ 239 (475)
++||||+..|...+...++.+|++|+|+|++.... + ....+.+..+.. .+.| +++|.||+|+... ..
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~- 117 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDR---V---SEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LS- 117 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CC-
Confidence 99999999998877778899999999999876421 1 122333332221 2356 9999999998422 11
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.+++ ..+++..++.....+.++++||++|.|+.+++.
T Consensus 118 --~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~ 154 (169)
T cd04158 118 --VEEM----TELLSLHKLCCGRSWYIQGCDARSGMGLYEGLD 154 (169)
T ss_pred --HHHH----HHHhCCccccCCCcEEEEeCcCCCCCCHHHHHH
Confidence 1122 222221111101235788999999999998643
No 131
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=2.3e-16 Score=140.95 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=87.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|++|+|||||+++|..... . . ..|. .+.+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---------------------------~-----~---~~~~-----~v~~~~~--~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---------------------------L-----A---RKTQ-----AVEFNDK--G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---------------------------c-----C---ccce-----EEEECCC--C
Confidence 699999999999999999831100 0 0 0111 1111111 2
Q ss_pred EEeCCCC----cCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 164 ILDAPGH----KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 164 liDtPGh----~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
+|||||. .++...+..++..+|++|+|+|+..+.. ......+.. ..+.| +++++||+|++..+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s-------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES-------RLPAGLLDI--GVSKR-QIAVISKTDMPDAD--- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc-------ccCHHHHhc--cCCCC-eEEEEEccccCccc---
Confidence 7999996 4567777777889999999999998742 122222221 23566 89999999984322
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ..+..+++..++ ..|++++||++|.|+.++++
T Consensus 108 --~----~~~~~~~~~~~~----~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 108 --V----AATRKLLLETGF----EEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred --H----HHHHHHHHHcCC----CCCEEEEECCCccCHHHHHH
Confidence 1 123344555544 24899999999999999644
No 132
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=5.6e-16 Score=169.74 Aligned_cols=153 Identities=25% Similarity=0.276 Sum_probs=110.3
Q ss_pred ccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEE
Q 011910 76 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 155 (475)
Q Consensus 76 ~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 155 (475)
.+.+...++|+|+|++|+|||||+++|+.....+ .+...|+|.+......
T Consensus 269 ~~~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i------------------------------v~~~pGvT~d~~~~~~ 318 (712)
T PRK09518 269 KAGPKAVGVVAIVGRPNVGKSTLVNRILGRREAV------------------------------VEDTPGVTRDRVSYDA 318 (712)
T ss_pred ccccccCcEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCeeEEEEEEEE
Confidence 3445566789999999999999999995321111 1123678887777777
Q ss_pred eeCCeeEEEEeCCCCcC--------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEE
Q 011910 156 ETETTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 227 (475)
Q Consensus 156 ~~~~~~~~liDtPGh~~--------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivvi 227 (475)
.+.+..+.+|||||+.. |...+..++..||++|+|+|+..|.. ....+.+..++..+.| +|+|+
T Consensus 319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~-------~~d~~i~~~Lr~~~~p-vIlV~ 390 (712)
T PRK09518 319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLT-------STDERIVRMLRRAGKP-VVLAV 390 (712)
T ss_pred EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEE
Confidence 88899999999999763 44555567889999999999998753 3455667777788888 99999
Q ss_pred EccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 228 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 228 NKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
||+|+.... . . .. .+..+++. .++|+||++|.|+.++++
T Consensus 391 NK~D~~~~~---~---~----~~-~~~~lg~~-----~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 391 NKIDDQASE---Y---D----AA-EFWKLGLG-----EPYPISAMHGRGVGDLLD 429 (712)
T ss_pred ECcccccch---h---h----HH-HHHHcCCC-----CeEEEECCCCCCchHHHH
Confidence 999983211 0 1 11 12223443 357999999999998743
No 133
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=4e-16 Score=170.86 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=108.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
..++|+++|++|+|||||+++|+.....+. ....|.|.+.....+.+.+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v------------------------------~~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV------------------------------NDLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc------------------------------CCCCCCCcCcceeEEEECCC
Confidence 457999999999999999999954321110 11256666666566777888
Q ss_pred eEEEEeCCCCcC---------cHHH--HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEc
Q 011910 161 RFTILDAPGHKS---------YVPN--MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (475)
Q Consensus 161 ~~~liDtPGh~~---------f~~~--~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNK 229 (475)
.+.|+||||+.+ |... ...++..+|++|+|+|+..+.. .+....+..+...+.| +|+|+||
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s-------~~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS-------EQDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEc
Confidence 999999999642 2222 1344678999999999999864 4666677777777888 9999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 230 iD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+|+... ...+.+...+...+.... ..+++++||++|.|+.++++
T Consensus 571 ~DL~~~----~~~~~~~~~~~~~l~~~~-----~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 571 WDLMDE----FRRQRLERLWKTEFDRVT-----WARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred hhcCCh----hHHHHHHHHHHHhccCCC-----CCCEEEEECCCCCCHHHHHH
Confidence 999432 222333333433332222 35789999999999998765
No 134
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=6.9e-16 Score=138.93 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=96.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
+...+|+++|+.|+|||||+++|.. +.... .....++.+.....+...+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 53 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP-----------------------------GQGATIGVDFMIKTVEIKG 53 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeEEEEEEEEECC
Confidence 4568999999999999999999842 11100 0011122223333344444
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH---HcCCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~---~~~i~~iivviNKiD~~~ 234 (475)
..+.++|+||+..|...+...+..+|++++|+|+..+.. |. .....+..+. ..++| +++|+||+|+..
T Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~ 126 (169)
T cd04114 54 EKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYANNKVI-TILVGNKIDLAE 126 (169)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 558889999999999888888999999999999987532 11 1122222222 23577 789999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. .......+ .+... ...+++++||++|.|+.+++
T Consensus 127 ~~---~i~~~~~~----~~~~~-----~~~~~~~~Sa~~~~gv~~l~ 161 (169)
T cd04114 127 RR---EVSQQRAE----EFSDA-----QDMYYLETSAKESDNVEKLF 161 (169)
T ss_pred cc---ccCHHHHH----HHHHH-----cCCeEEEeeCCCCCCHHHHH
Confidence 11 11111111 12221 13579999999999999863
No 135
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=3.6e-16 Score=140.11 Aligned_cols=149 Identities=18% Similarity=0.122 Sum_probs=91.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|++|+|||||+++|+...- ... ..... + +.......+......+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~--~~~------------------------~~~t~---~-~~~~~~~~~~~~~~~l~ 51 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF--VDD------------------------YDPTI---E-DSYRKQIEIDGEVCLLD 51 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--Ccc------------------------cCCch---h-hhEEEEEEECCEEEEEE
Confidence 689999999999999999953221 100 00000 0 00001111222346788
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCchH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~~~ 239 (475)
++||||+.+|.......+..+|++++|+|+..... |+ ........+.. .+.| +|+|.||+|+......
T Consensus 52 i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~- 123 (164)
T smart00173 52 ILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQS---FE---EIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVV- 123 (164)
T ss_pred EEECCCcccchHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccceE-
Confidence 99999999998888788899999999999987532 11 11222222211 2567 8999999998432100
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.......+.+.. ..+++++||++|.|+.+++
T Consensus 124 -----~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 124 -----STEEGKELARQW------GCPFLETSAKERVNVDEAF 154 (164)
T ss_pred -----cHHHHHHHHHHc------CCEEEEeecCCCCCHHHHH
Confidence 011222233332 3589999999999999864
No 136
>PRK04213 GTP-binding protein; Provisional
Probab=99.66 E-value=9.3e-16 Score=142.50 Aligned_cols=155 Identities=24% Similarity=0.278 Sum_probs=91.7
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|++|+|||||+++|..... ......|.|..... +...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-------------------------------~~~~~~~~t~~~~~--~~~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-------------------------------RVGKRPGVTRKPNH--YDWG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCceeeCceE--Eeec--
Confidence 346899999999999999999942110 01122456655433 2222
Q ss_pred eEEEEeCCCCc-----------CcHHHH---h-hccccCCEEEEEEecCCCcc-ccccC---CCcchHHHHHHHHHcCCc
Q 011910 161 RFTILDAPGHK-----------SYVPNM---I-SGASQADIGVLVISARKGEF-ETGFE---KGGQTREHVMLAKTLGVT 221 (475)
Q Consensus 161 ~~~liDtPGh~-----------~f~~~~---~-~~~~~~D~~vlVVda~~g~~-e~~~~---~~~~t~~~l~~~~~~~i~ 221 (475)
.+.++||||+. .|...+ . .++..+|++++|+|+....- ...+. ....+.+.+..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 68999999952 232221 1 24556789999999864210 00000 012345566666677899
Q ss_pred eEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCc-c--cCCeeEEEeeccccccccccc
Q 011910 222 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN-V--KKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 222 ~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~--~~~~~iipiSa~~g~gi~~l~ 281 (475)
+++|+||+|+... ..+..+++. +.+++. + ....+++++||++| |+.+++
T Consensus 133 -~iiv~NK~Dl~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~ 184 (201)
T PRK04213 133 -PIVAVNKMDKIKN--RDEVLDEIA-------ERLGLYPPWRQWQDIIAPISAKKG-GIEELK 184 (201)
T ss_pred -eEEEEECccccCc--HHHHHHHHH-------HHhcCCccccccCCcEEEEecccC-CHHHHH
Confidence 8999999998422 111222222 222221 0 01136899999999 999863
No 137
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=8.2e-16 Score=140.59 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=96.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
+...+|+++|..++|||||+.+|.. +... . ...|+......+...+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~--~~~~-------------------------~-------~~pt~g~~~~~~~~~~ 60 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV-------------------------T-------TIPTIGFNVETVEYKN 60 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc--CCCc-------------------------c-------ccCCcceeEEEEEECC
Confidence 4457899999999999999998831 1110 0 0011112223355678
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~ 235 (475)
..+.|+|+||+..|...+...++.+|++|+|+|++.... + ...+..+.... ..+.| ++||.||+|++..
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s---~---~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 899999999999998888788899999999999986531 1 12222222221 12566 9999999998533
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcc--cCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNV--KKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~--~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ..+++.+ . +++.. ...+.++++||++|+|+.++++
T Consensus 134 ~----~~~~~~~----~---l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~ 171 (181)
T PLN00223 134 M----NAAEITD----K---LGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
T ss_pred C----CHHHHHH----H---hCccccCCCceEEEeccCCCCCCHHHHHH
Confidence 1 1122222 2 22210 1234677999999999998643
No 138
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.66 E-value=2.2e-15 Score=135.96 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=95.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee--C
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--E 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~ 158 (475)
...+|+++|.+++|||||+++|+.. .... +....+..+.....+.. .
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTN--KFDT-----------------------------QLFHTIGVEFLNKDLEVDGH 52 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcC--CCCc-----------------------------CcCCceeeEEEEEEEEECCe
Confidence 4478999999999999999998421 1110 00011122222222333 3
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-------HcCCceEEEEEEccC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-------TLGVTKLLLVVNKMD 231 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-------~~~i~~iivviNKiD 231 (475)
...+.|+||||+..|...+...++.+|++|+|+|....... + ...+.+..+. ..++| +++|.||+|
T Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 125 (170)
T cd04116 53 FVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSF---Q---NLSNWKKEFIYYADVKEPESFP-FVVLGNKND 125 (170)
T ss_pred EEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHH---H---hHHHHHHHHHHhcccccCCCCc-EEEEEECcc
Confidence 45678999999999988887788999999999998876421 1 1222222111 13467 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+...... .+++..+++..++ .+++++||++|.|+.+++
T Consensus 126 l~~~~~~-------~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 126 IPERQVS-------TEEAQAWCRENGD-----YPYFETSAKDATNVAAAF 163 (170)
T ss_pred ccccccC-------HHHHHHHHHHCCC-----CeEEEEECCCCCCHHHHH
Confidence 8421111 2233344444432 379999999999999863
No 139
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.66 E-value=1.3e-15 Score=137.56 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=91.7
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 159 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 159 (475)
..+|+++|+.|+|||||+++|+. +... .+....+..+.....+...+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA--GRFP-----------------------------ERTEATIGVDFRERTVEIDGER 50 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--CCCC-----------------------------CccccceeEEEEEEEEEECCeE
Confidence 47899999999999999999842 1110 00111222222223333444
Q ss_pred eeEEEEeCCCCcCcHHH-HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011910 160 TRFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~-~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+.+|... ....++.+|++++|+|+..+... ......+..+.. .++| +|+|.||+|+..
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 123 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASF------HSLPSWIEECEQHSLPNEVP-RILVGNKCDLRE 123 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHH------HhHHHHHHHHHHhcCCCCCC-EEEEEECccchh
Confidence 67999999999988643 44457789999999999876431 123333333333 2477 899999999832
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccc---ccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM---GLNMKTR 280 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~---g~gi~~l 280 (475)
... . ...+...+.+.. .++++++||++ +.|+.++
T Consensus 124 ~~~---~---~~~~~~~~~~~~------~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 124 QIQ---V---PTDLAQRFADAH------SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred hcC---C---CHHHHHHHHHHc------CCcEEEEeccCCcCCCCHHHH
Confidence 210 0 011112222222 35799999999 6666664
No 140
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.66 E-value=8.3e-16 Score=137.94 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=95.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--e
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 160 (475)
.+|+++|.+++|||||+++|+...- . .+....++.+.....+...+ .
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 52 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF--N-----------------------------LDSKSTIGVEFATRSIQIDGKTI 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCccceEEEEEEEEECCEEE
Confidence 6899999999999999999942210 0 00011222222233333444 5
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCCc
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~~ 237 (475)
.+.++||||+..|.......+..+|++|+|+|+.+... | ....+.+..+.. .++| +++|.||.|+....
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~- 124 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQT---F---ENVERWLKELRDHADSNIV-IMLVGNKSDLRHLR- 124 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccccc-
Confidence 68999999999988877777889999999999986432 1 122233333332 2466 89999999984321
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
... .++...+.... .++++++||++|.|+.+++
T Consensus 125 -~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 125 -AVP----TEEAKAFAEKN------GLSFIETSALDGTNVEEAF 157 (165)
T ss_pred -cCC----HHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 111 11222233322 3579999999999999864
No 141
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.66 E-value=1.1e-15 Score=136.66 Aligned_cols=148 Identities=17% Similarity=0.157 Sum_probs=93.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee----CC
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET----ET 159 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~----~~ 159 (475)
+|+++|..++|||||+++|.... ... +....+..+.....+.. ..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGI--FTK-----------------------------DYKKTIGVDFLEKQIFLRQSDED 50 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCcEEEEEEEEEEEEcCCCCE
Confidence 69999999999999999984211 000 00112222222222222 34
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH--HcCCceEEEEEEccCCCCCCc
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~--~~~i~~iivviNKiD~~~~~~ 237 (475)
..+.|+||||+.+|...+...++.+|++++|+|+..... |+ .....+..+. ..++| +|+|+||+|+....
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~- 122 (162)
T cd04106 51 VRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES---FE---AIESWKEKVEAECGDIP-MVLVQTKIDLLDQA- 122 (162)
T ss_pred EEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEEChhccccc-
Confidence 679999999999998888888899999999999987542 11 1122222222 23788 89999999983211
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
... .++...+.+.. .++++++||++|.|+.+++
T Consensus 123 -~v~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 123 -VIT----NEEAEALAKRL------QLPLFRTSVKDDFNVTELF 155 (162)
T ss_pred -CCC----HHHHHHHHHHc------CCeEEEEECCCCCCHHHHH
Confidence 100 12223333333 3479999999999998853
No 142
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.66 E-value=9.8e-16 Score=139.56 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=95.6
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe----
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE---- 156 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~---- 156 (475)
..++|+++|..++|||||+++|.... ..... ...-|.........+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~--~~~~~---------------------------~~t~~~~~~~~~~~~~~~~~ 53 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNK--FNPKF---------------------------ITTVGIDFREKRVVYNSSGP 53 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCccC---------------------------CCccceEEEEEEEEEcCccc
Confidence 45789999999999999999984321 11000 0001111111111111
Q ss_pred ------eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc----CCceEEEE
Q 011910 157 ------TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLV 226 (475)
Q Consensus 157 ------~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~----~i~~iivv 226 (475)
.....+.|+||||+..|.......++.+|++|+|+|+..... |. ..+..+..+... +.| +++|
T Consensus 54 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv 126 (180)
T cd04127 54 GGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQS---FL---NVRNWMSQLQTHAYCENPD-IVLC 126 (180)
T ss_pred cccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEE
Confidence 123678999999999998888888899999999999986432 11 223333333332 455 8999
Q ss_pred EEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 227 iNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.||+|+.... .. ..++...+.+.. .++++++||++|.|+.+++.
T Consensus 127 ~nK~Dl~~~~--~v----~~~~~~~~~~~~------~~~~~e~Sak~~~~v~~l~~ 170 (180)
T cd04127 127 GNKADLEDQR--QV----SEEQAKALADKY------GIPYFETSAATGTNVEKAVE 170 (180)
T ss_pred EeCccchhcC--cc----CHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 9999984211 00 112233344433 34799999999999998754
No 143
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.66 E-value=1.7e-15 Score=133.92 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=96.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|++++|||||+++|........ .....+.+..............+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-----------------------------YKSTIGVDFKSKTIEIDGKTVKL 51 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-----------------------------cCCceeeeeEEEEEEECCEEEEE
Confidence 3799999999999999999842211100 00111222222222222244678
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCCchH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~~~~ 239 (475)
.++|+||+..|.......+..+|++|+|+|+.+... + ......+..+... +.| +++++||+|+.... .
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~--~ 122 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRES---F---ENLDKWLKELKEYAPENIP-IILVGNKIDLEDQR--Q 122 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEEcccccccc--c
Confidence 999999999999888888999999999999987431 1 1233344444443 367 89999999994111 1
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
...+++..+.... .++++.+|+++|.|+.++
T Consensus 123 ----~~~~~~~~~~~~~------~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 123 ----VSTEEAQQFAKEN------GLLFFETSAKTGENVEEL 153 (159)
T ss_pred ----ccHHHHHHHHHHc------CCeEEEEecCCCCCHHHH
Confidence 1122333333332 358999999999999885
No 144
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.66 E-value=1.2e-15 Score=136.80 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=93.5
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|++++|||||+++|+..... . .....-|.+.......+......+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~--~---------------------------~~~~t~~~~~~~~~~~~~~~~~~l 51 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV--S---------------------------KYLPTIGIDYGVKKVSVRNKEVRV 51 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--C---------------------------CCCCccceeEEEEEEEECCeEEEE
Confidence 37999999999999999999432110 0 000001122222222233345678
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--------cCCceEEEEEEccCCCC
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--------LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--------~~i~~iivviNKiD~~~ 234 (475)
+|+||||+..|...+...++.+|++|+|+|++.... |+ .....+..+.. .+.| +++|+||+|+..
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 124 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS---FE---ALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTK 124 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhccccccCCCce-EEEEEEchhccc
Confidence 999999999998777777889999999999987532 11 12222222222 2455 999999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. . ....+...+.... .++++++||++|.|+.+++.
T Consensus 125 ~~--~----~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 125 HR--A----VSEDEGRLWAESK------GFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred cc--c----cCHHHHHHHHHHc------CCeEEEEECCCCCCHHHHHH
Confidence 10 0 0111122233332 35799999999999998643
No 145
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=9.4e-16 Score=138.29 Aligned_cols=152 Identities=19% Similarity=0.165 Sum_probs=96.8
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|++|+|||||+++|+...-... .....|.+.......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCCccceeEEEEEEEECCEEEE
Confidence 47899999999999999999843211000 0001233332222233333457
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCCch
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~~~ 238 (475)
+.|+||||+..|.......++.+|++|+|+|++.... | ......+..++. .++| +|+|.||+|+....
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~-- 125 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRR-- 125 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECccccccc--
Confidence 8999999999988877778889999999999986532 1 122333333333 2567 89999999984211
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ...++...+++.. ..+++++||++|.|+.+++
T Consensus 126 ~----~~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 126 E----VSYEEGEAFAKEH------GLIFMETSAKTASNVEEAF 158 (168)
T ss_pred C----CCHHHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 0 0112222333333 3479999999999999864
No 146
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.2e-15 Score=141.90 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=95.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee---CCe
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---ETT 160 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---~~~ 160 (475)
+|+++|..++|||||+++|+.. .... .....+..+.....+.. ...
T Consensus 2 KivivG~~~vGKTsli~~l~~~--~~~~-----------------------------~~~~t~~~d~~~~~v~~~~~~~~ 50 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHG--IFSQ-----------------------------HYKATIGVDFALKVIEWDPNTVV 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCCceeEEEEEEEEEECCCCEE
Confidence 6899999999999999998532 1110 00011111222222333 346
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-------HcCCceEEEEEEccCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-------TLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-------~~~i~~iivviNKiD~~ 233 (475)
.+.|+||||+..|...+...++.+|++|+|+|++.... |+ .....+..+. ..++| +|+|.||+|+.
T Consensus 51 ~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s---~~---~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~ 123 (201)
T cd04107 51 RLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST---FE---AVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLK 123 (201)
T ss_pred EEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcc
Confidence 78999999999998877778899999999999887532 11 1111222111 13567 89999999994
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... . ...+++..+++..++ .+++++||++|.|+.+++.
T Consensus 124 ~~~--~----~~~~~~~~~~~~~~~-----~~~~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 124 KRL--A----KDGEQMDQFCKENGF-----IGWFETSAKEGINIEEAMR 161 (201)
T ss_pred ccc--c----cCHHHHHHHHHHcCC-----ceEEEEeCCCCCCHHHHHH
Confidence 211 0 112233444444432 4799999999999999754
No 147
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.65 E-value=7.1e-16 Score=137.58 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=92.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-CCeeE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 162 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~~ 162 (475)
+|+++|.+|+|||||+++|.... .. .. ....|.++ ..+.. ....+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~--~~-------------------------~~---~~t~~~~~----~~~~~~~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE--LV-------------------------TT---IPTVGFNV----EMLQLEKHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--cc-------------------------cc---cCccCcce----EEEEeCCceEE
Confidence 48999999999999999984321 00 00 00112211 11222 35789
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHH----HHcCCceEEEEEEccCCCCCCch
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~----~~~~i~~iivviNKiD~~~~~~~ 238 (475)
.++||||+..|...+...+..+|++|+|+|+.++.. + ......+... ...+.| +++|+||+|++... .
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~ 118 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR---L---DESQKELKHILKNEHIKGVP-VVLLANKQDLPGAL-T 118 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECcccccCc-C
Confidence 999999999988887777889999999999987631 1 1222222222 124677 99999999984321 1
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.+++...+. ...+.....++++++||++|.|+.+++
T Consensus 119 ---~~~i~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 119 ---AEEITRRFK----LKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred ---HHHHHHHcC----CcccCCCCcEEEEecccccCCChHHHH
Confidence 122222221 111111124679999999999999863
No 148
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.65 E-value=7.3e-16 Score=137.86 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=93.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|..++|||||+.+|.. +... .. ....|..+ ..+......+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~--~~~~-------------------------~~---~pt~g~~~----~~~~~~~~~~~ 47 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GEIV-------------------------TT---IPTIGFNV----ETVEYKNISFT 47 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCc-------------------------cc---CCCCCcce----EEEEECCEEEE
Confidence 689999999999999999831 1110 00 00012211 23445678899
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCchH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~~~ 239 (475)
|+||||+..|...+...++.||++|+|+|++.... | .+..+.+..+.. .+.| +++++||+|+.... .
T Consensus 48 l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~- 118 (159)
T cd04150 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---I---GEAREELQRMLNEDELRDAV-LLVFANKQDLPNAM-S- 118 (159)
T ss_pred EEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCC-C-
Confidence 99999999998887778899999999999976421 1 123333332221 2466 99999999984321 1
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.+++...+ ....+. ...+.++++||++|.|+.+++
T Consensus 119 --~~~i~~~~----~~~~~~-~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 119 --AAEVTDKL----GLHSLR-NRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred --HHHHHHHh----CccccC-CCCEEEEEeeCCCCCCHHHHH
Confidence 11222211 100111 124578899999999999853
No 149
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.65 E-value=6e-16 Score=139.20 Aligned_cols=151 Identities=16% Similarity=0.173 Sum_probs=95.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|+.++|||||+++|... .+... .....|.+.......+......+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~--~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l 53 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK--KFMAD---------------------------CPHTIGVEFGTRIIEVNGQKIKL 53 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCC---------------------------CCcccceeEEEEEEEECCEEEEE
Confidence 57999999999999999998421 11100 00011222222222222234578
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCCchH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~~~~ 239 (475)
.|+||||+..|...+...++.+|++|+|+|++.... |+ ...+.+..... .+.| +++|.||+|+.... .
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~--~ 124 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN---HLSSWLTDARNLTNPNTV-IFLIGNKADLEAQR--D 124 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc--C
Confidence 999999999998888788899999999999987532 11 23333333332 2455 89999999984321 1
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ..++...+++.. ..+++++||++|.|+.+++
T Consensus 125 ~----~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 125 V----TYEEAKQFADEN------GLLFLECSAKTGENVEDAF 156 (166)
T ss_pred c----CHHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 0 112223333332 3589999999999999863
No 150
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.65 E-value=1.3e-15 Score=141.40 Aligned_cols=150 Identities=20% Similarity=0.193 Sum_probs=96.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--ee
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 161 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 161 (475)
.|+++|..++|||||+.+++. +.+.. +....++.+.....+..++ ..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~--~~f~~-----------------------------~~~~Ti~~~~~~~~i~~~~~~v~ 50 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTD--DTFCE-----------------------------ACKSGVGVDFKIKTVELRGKKIR 50 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHh--CCCCC-----------------------------cCCCcceeEEEEEEEEECCEEEE
Confidence 589999999999999999842 21110 1111122222223344444 67
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCCch
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~~~ 238 (475)
+.|+||+|++.|...+...++.+|++|+|+|++.... |+ .....+..+.. .++| +|+|.||+|+... .
T Consensus 51 l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~S---f~---~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~--~ 121 (202)
T cd04120 51 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKWMKMIDKYASEDAE-LLLVGNKLDCETD--R 121 (202)
T ss_pred EEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccc--c
Confidence 8999999999998888888899999999999987643 21 22333333332 2567 8999999998321 1
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+- ...+...+.++. ..+.++.+||++|.|+.+++.
T Consensus 122 ~v----~~~~~~~~a~~~-----~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 122 EI----SRQQGEKFAQQI-----TGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred cc----CHHHHHHHHHhc-----CCCEEEEecCCCCCCHHHHHH
Confidence 10 011122222222 135799999999999999754
No 151
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.65 E-value=1.2e-15 Score=137.13 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=95.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|..++|||||+++|+... .... + ....|++..............+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~--~~~~---------------------~------~~t~~~~~~~~~~~~~~~~~~~ 52 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--FTSA---------------------F------VSTVGIDFKVKTVFRNDKRVKL 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------C------CCceeeEEEEEEEEECCEEEEE
Confidence 579999999999999999984321 1000 0 0011222222112122233679
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCCchH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~~~~ 239 (475)
.++||||+.+|.......++.+|++++|+|+..... |+ ...+.+..+... +.| +++|+||+|+.... .
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~--~ 123 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FN---AVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDER--V 123 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCC-EEEEEECcccCccc--c
Confidence 999999999998888888899999999999876432 21 333334344332 455 99999999984321 1
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. .++...+.+.. ..+++++||++|.|+.++++
T Consensus 124 ~~----~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 124 VS----SERGRQLADQL------GFEFFEASAKENINVKQVFE 156 (165)
T ss_pred cC----HHHHHHHHHHc------CCEEEEEECCCCCCHHHHHH
Confidence 00 11222233333 24799999999999998643
No 152
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.65 E-value=2.3e-15 Score=134.19 Aligned_cols=151 Identities=21% Similarity=0.189 Sum_probs=95.8
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|++|+|||||+++|+...-... .. ....+.......+...+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~------------------------~~------~~~~~~~~~~~~~~~~~~~ 52 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIV------------------------SP------KPQTTRNRIRGIYTDDDAQ 52 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEec------------------------cC------CCCceeceEEEEEEcCCeE
Confidence 46799999999999999999853211000 00 0111212222223445678
Q ss_pred EEEEeCCCCcCcH--------HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCC
Q 011910 162 FTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 162 ~~liDtPGh~~f~--------~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~ 233 (475)
+.++||||+.... ......+..+|++++|+|+..+.. ......+..+...+.| +++|+||+|+.
T Consensus 53 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~Dl~ 124 (168)
T cd04163 53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG-------EGDEFILELLKKSKTP-VILVLNKIDLV 124 (168)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC-------chHHHHHHHHHHhCCC-EEEEEEchhcc
Confidence 9999999986542 233345778999999999998732 3455555666666788 88999999994
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. ..........+. ...+ ..+++++|++++.|++++.
T Consensus 125 ~~---~~~~~~~~~~~~---~~~~-----~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 125 KD---KEDLLPLLEKLK---ELGP-----FAEIFPISALKGENVDELL 161 (168)
T ss_pred cc---HHHHHHHHHHHH---hccC-----CCceEEEEeccCCChHHHH
Confidence 21 122222222222 1111 3479999999999998853
No 153
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=8.5e-16 Score=143.16 Aligned_cols=147 Identities=20% Similarity=0.189 Sum_probs=90.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++|+|||||+++|+...... ....+.|+......+.+.+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYA-------------------------------EDQLFATLDPTTRRLRLPD 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhcc-------------------------------CCccceeccceeEEEEecC
Confidence 445799999999999999999984322100 0001233333333444444
Q ss_pred -eeEEEEeCCCCcCc-H-------HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEE
Q 011910 160 -TRFTILDAPGHKSY-V-------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVV 227 (475)
Q Consensus 160 -~~~~liDtPGh~~f-~-------~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivvi 227 (475)
..+.|+||||+.+. . ..+...+..+|++++|+|+..+... .+...+...+... +.| +++|+
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~------~~~~~~~~~l~~~~~~~~~-viiV~ 160 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE------EQIETVEKVLKELGAEDIP-MILVL 160 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh------hHHHHHHHHHHHcCcCCCC-EEEEE
Confidence 38999999998432 1 1122235689999999999876431 1222233333333 466 89999
Q ss_pred EccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 228 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 228 NKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
||+|+.... ... ..+.. ...+++++||++|.|+.++.
T Consensus 161 NK~Dl~~~~----~~~-------~~~~~------~~~~~~~~Sa~~~~gi~~l~ 197 (204)
T cd01878 161 NKIDLLDDE----ELE-------ERLEA------GRPDAVFISAKTGEGLDELL 197 (204)
T ss_pred EccccCChH----HHH-------HHhhc------CCCceEEEEcCCCCCHHHHH
Confidence 999994321 111 11111 24579999999999999863
No 154
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.65 E-value=3.3e-15 Score=137.42 Aligned_cols=152 Identities=14% Similarity=0.196 Sum_probs=100.2
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 158 (475)
...+|+++|..++|||||+.+|.. +... .+....++.+.....+..+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~i~~~~~ 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD--GSTE-----------------------------SPYGYNMGIDYKTTTILLDGR 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCC-----------------------------CCCCCcceeEEEEEEEEECCE
Confidence 457899999999999999998842 1111 0001112222222223333
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~~ 236 (475)
...+.|+||||+.+|...+....+.+|++|||+|.+.... |+ ..+..+..+.. .++| +|||.||+|+...
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~S---f~---~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~- 125 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWS---FD---GIDRWIKEIDEHAPGVP-KILVGNRLHLAFK- 125 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccchhc-
Confidence 4678999999999999877777889999999999987643 22 33444444433 3567 8999999998321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ...++.+.+.+.. .++++.+||++|.|+.+++.
T Consensus 126 -~~----v~~~~~~~~a~~~------~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 126 -RQ----VATEQAQAYAERN------GMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred -cC----CCHHHHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 00 1123344444443 35799999999999999754
No 155
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.65 E-value=2.4e-15 Score=135.12 Aligned_cols=149 Identities=17% Similarity=0.132 Sum_probs=93.0
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|..|+|||||+++++.. .+.... ..+ .+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~--~f~~~~---------------------~~t------~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKG--TFRESY---------------------IPT------IEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCCCCc---------------------CCc------chheE-EEEEEECCEEEEE
Confidence 57999999999999999998432 111000 000 00000 1111223344678
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH------cCCceEEEEEEccCCCCC-
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV- 235 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~------~~i~~iivviNKiD~~~~- 235 (475)
.++||||+.+|.......++.+|++|+|+|...... | ...+..+..+.. .++| +++|.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS---L---EELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKR 124 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccC
Confidence 999999999998777777889999999999987642 1 123333333332 3577 8999999998431
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.... .+...+.... .++++++||++|.|+.+++
T Consensus 125 ~v~~-------~~~~~~~~~~------~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 125 EVSS-------NEGAACATEW------NCAFMETSAKTNHNVQELF 157 (165)
T ss_pred eecH-------HHHHHHHHHh------CCcEEEeecCCCCCHHHHH
Confidence 1111 1111222222 3579999999999999863
No 156
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=1.7e-15 Score=150.88 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=102.0
Q ss_pred ccccccccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceE
Q 011910 68 DAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT 147 (475)
Q Consensus 68 ~~~~~~~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~t 147 (475)
.+-+.......-+.+..|+++|.+|||||||+++|......+. + ..+.|
T Consensus 144 ~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va-------------------------~------ypfTT 192 (335)
T PRK12299 144 EPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------D------YPFTT 192 (335)
T ss_pred CCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccC-------------------------C------CCCce
Confidence 3333334444556667899999999999999999843211100 0 12345
Q ss_pred EeeeeeEEee-CCeeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--
Q 011910 148 VEVGRAHFET-ETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-- 217 (475)
Q Consensus 148 i~~~~~~~~~-~~~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-- 217 (475)
.......+.+ +...|.++|+||... +....++.+..+|++|+|||++.... + .........+..
T Consensus 193 ~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s---~---e~~~~~~~EL~~~~ 266 (335)
T PRK12299 193 LHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP---V---EDYKTIRNELEKYS 266 (335)
T ss_pred eCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC---H---HHHHHHHHHHHHhh
Confidence 5555555555 557899999999742 34455666778999999999986421 1 122222233322
Q ss_pred ---cCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 218 ---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 218 ---~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.+.| +++|+||+|+.... .... ..+..+++.. ..+++++||++|.|+.+++.
T Consensus 267 ~~L~~kp-~IIV~NKiDL~~~~---~~~~---~~~~~~~~~~------~~~i~~iSAktg~GI~eL~~ 321 (335)
T PRK12299 267 PELADKP-RILVLNKIDLLDEE---EERE---KRAALELAAL------GGPVFLISAVTGEGLDELLR 321 (335)
T ss_pred hhcccCC-eEEEEECcccCCch---hHHH---HHHHHHHHhc------CCCEEEEEcCCCCCHHHHHH
Confidence 2566 88999999984321 1111 1122222222 35799999999999999754
No 157
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.65 E-value=2.2e-15 Score=139.27 Aligned_cols=154 Identities=17% Similarity=0.192 Sum_probs=98.1
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
.....++|+++|++|+|||||+++|+..... . ......|.|.......+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~~-- 68 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNL-A----------------------------RTSKTPGRTQLINFFEV-- 68 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c----------------------------cccCCCCceeEEEEEec--
Confidence 3446678999999999999999999532100 0 00111344444433222
Q ss_pred CCeeEEEEeCCCCc----------CcHHH---HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEE
Q 011910 158 ETTRFTILDAPGHK----------SYVPN---MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 224 (475)
Q Consensus 158 ~~~~~~liDtPGh~----------~f~~~---~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~ii 224 (475)
+..+.|+||||+. .|... .+.....++++++|+|+..+.. ....+.+..+...++| ++
T Consensus 69 -~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~i~~~l~~~~~~-~i 139 (196)
T PRK00454 69 -NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK-------ELDLQMIEWLKEYGIP-VL 139 (196)
T ss_pred -CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC-------HHHHHHHHHHHHcCCc-EE
Confidence 4789999999963 22222 2233345578999999887642 2334455666677888 88
Q ss_pred EEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 225 vviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+++||+|+... ...+.+.+.+...+... ..+++|+||++|.|+.++.
T Consensus 140 iv~nK~Dl~~~----~~~~~~~~~i~~~l~~~------~~~~~~~Sa~~~~gi~~l~ 186 (196)
T PRK00454 140 IVLTKADKLKK----GERKKQLKKVRKALKFG------DDEVILFSSLKKQGIDELR 186 (196)
T ss_pred EEEECcccCCH----HHHHHHHHHHHHHHHhc------CCceEEEEcCCCCCHHHHH
Confidence 99999998422 23334444455555432 3479999999999999853
No 158
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.65 E-value=5.1e-16 Score=135.84 Aligned_cols=132 Identities=23% Similarity=0.248 Sum_probs=83.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|++|+|||||+++|....- ....|+. ..+.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-----------------------------------~~~~t~~-----~~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-----------------------------------LYKKTQA-----VEYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-----------------------------------cccccee-----EEEcC---e
Confidence 689999999999999999842110 0001111 11222 6
Q ss_pred EEeCCCCc----CcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 164 ILDAPGHK----SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 164 liDtPGh~----~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
++||||+. .+...+...++.+|++|+|+|+..+.. .+..+.+. ..+.| +|+|+||+|+....
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s-------~~~~~~~~---~~~~p-~ilv~NK~Dl~~~~--- 104 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES-------RFPPGFAS---IFVKP-VIGLVTKIDLAEAD--- 104 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc-------CCChhHHH---hccCC-eEEEEEeeccCCcc---
Confidence 89999973 344455556789999999999988753 12222222 23446 88999999984211
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. .+++..+++..++ .+++++||++|.|+++++
T Consensus 105 ~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 105 VD----IERAKELLETAGA-----EPIFEISSVDEQGLEALV 137 (142)
T ss_pred cC----HHHHHHHHHHcCC-----CcEEEEecCCCCCHHHHH
Confidence 11 1223334444332 278999999999998853
No 159
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.65 E-value=5.4e-16 Score=142.70 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=96.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+..+|+++|+.|+|||||+++|.... .. ....|+......+...+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~--~~--------------------------------~~~~T~~~~~~~i~~~~~ 63 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDR--LA--------------------------------QHVPTLHPTSEELTIGNI 63 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC--Cc--------------------------------ccCCccCcceEEEEECCE
Confidence 45789999999999999999983211 00 001122222234556778
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~~ 236 (475)
.+.++|+||+..|...+...+..+|++++|+|+.+... + ......+..+. ..+.| +++++||+|+....
T Consensus 64 ~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~~ 136 (190)
T cd00879 64 KFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER---F---QESKEELDSLLSDEELANVP-FLILGNKIDLPGAV 136 (190)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCCc
Confidence 89999999999988777777889999999999976421 1 11222322222 23577 89999999984321
Q ss_pred chHHHHHHHHhhhhhHhhhhcC----------cccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGY----------NVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~----------~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. +++.+ .+..... .....++++++||++|.|+.+++
T Consensus 137 -~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~ 183 (190)
T cd00879 137 -SE---EELRQ----ALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF 183 (190)
T ss_pred -CH---HHHHH----HhCcccccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence 11 22222 2221100 00123579999999999999864
No 160
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.65 E-value=9.2e-16 Score=136.61 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=96.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|+.++|||||+++|..... . ....|+......+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--V--------------------------------TTIPTIGFNVETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--C--------------------------------CCCCCcCcceEEEEECCEEEE
Confidence 489999999999999999953320 0 011122222233555678999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCCCchH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~~~~~ 239 (475)
++||||+..|.......+..+|++++|+|+..+.. + ......+.... ..+.| +++|+||+|+....
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~--- 116 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER---I---EEAKEELHKLLNEEELKGVP-LLIFANKQDLPGAL--- 116 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEeeccCCcccc---
Confidence 99999999987777777889999999999987621 0 12233332222 24677 89999999994322
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..+++.+.+.... .. ...++++++||++|.|+.+++
T Consensus 117 -~~~~~~~~~~~~~----~~-~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 117 -SVSELIEKLGLEK----IL-GRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred -CHHHHHHhhChhh----cc-CCcEEEEEeeCCCCCCHHHHH
Confidence 2223333222111 11 125689999999999999853
No 161
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.64 E-value=7e-16 Score=132.80 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=92.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|.++|+++||||||+++|..... ....|..+ . +.=
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----------------------------------~~~KTq~i-----~---~~~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----------------------------------RYKKTQAI-----E---YYD 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----------------------------------CcCcccee-----E---ecc
Confidence 4789999999999999999932111 01112111 1 112
Q ss_pred EEEeCCC----CcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 163 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 163 ~liDtPG----h~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
.+||||| +..|....+..+..||.+++|.||+... ...--..+..++.| +|-||||+|++. +
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~----------~~~pP~fa~~f~~p-vIGVITK~Dl~~---~ 104 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR----------SVFPPGFASMFNKP-VIGVITKIDLPS---D 104 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC----------ccCCchhhcccCCC-EEEEEECccCcc---c
Confidence 5699999 5667777888888999999999999863 11122344556777 999999999942 1
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.+..+ ..+.+|+..|+. .+|++|+.+|+|+++|
T Consensus 105 ~~~i~----~a~~~L~~aG~~-----~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 105 DANIE----RAKKWLKNAGVK-----EIFEVSAVTGEGIEEL 137 (143)
T ss_pred hhhHH----HHHHHHHHcCCC-----CeEEEECCCCcCHHHH
Confidence 22333 344577777875 5799999999999985
No 162
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.64 E-value=2.4e-15 Score=139.50 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=88.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--e
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 160 (475)
.+|+++|..|+|||||+++|+.. .... +....++.......+..++ .
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~--~f~~-----------------------------~~~pt~~~~~~~~~i~~~~~~~ 49 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQ--EFPE-----------------------------EYIPTEHRRLYRPAVVLSGRVY 49 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcC--CCCc-----------------------------ccCCccccccceeEEEECCEEE
Confidence 36899999999999999998431 1110 0001111111111223344 5
Q ss_pred eEEEEeCCCCcCcHH--------HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH------HcCCceEEEE
Q 011910 161 RFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLV 226 (475)
Q Consensus 161 ~~~liDtPGh~~f~~--------~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~------~~~i~~iivv 226 (475)
.++|+||||+..|.. .....+..+|++|+|+|++.+.. |+ .....+..+. ..++| +|+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S---~~---~~~~~~~~i~~~~~~~~~~~p-iiiv 122 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDS---FH---YVKLLRQQILETRPAGNKEPP-IVVV 122 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcccCCCCCC-EEEE
Confidence 688999999876521 12344678999999999987632 11 1222222222 13577 8999
Q ss_pred EEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 227 iNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.||+|+...... ..+.+..+.++. ..++++++||++|.|+.+++.
T Consensus 123 gNK~Dl~~~~~~------~~~~~~~~~~~~-----~~~~~~e~Sak~g~~v~~lf~ 167 (198)
T cd04142 123 GNKRDQQRHRFA------PRHVLSVLVRKS-----WKCGYLECSAKYNWHILLLFK 167 (198)
T ss_pred EECccccccccc------cHHHHHHHHHHh-----cCCcEEEecCCCCCCHHHHHH
Confidence 999999432111 111222222221 146899999999999999754
No 163
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.64 E-value=2.3e-15 Score=136.21 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=94.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--Cee
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 161 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~ 161 (475)
.|+++|..++|||||+.+++... ... +....+..+.....+... ...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FDK-----------------------------NYKATIGVDFEMERFEILGVPFS 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCceeeEEEEEEEEECCEEEE
Confidence 58999999999999999995321 110 000111112211223333 367
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC---CceEEEEEEccCCCCCCch
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~---i~~iivviNKiD~~~~~~~ 238 (475)
+.|+||||+.+|.......++.+|++|+|+|+..... + .....++..+.... .+++++|.||+|+....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~-- 122 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVAS---L---EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA-- 122 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc--
Confidence 9999999999998888888899999999999976422 1 12333343333222 12388999999983221
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.......+...+.+.. ..+++.+||++|.|+.+++.
T Consensus 123 --~~~~~~~~~~~~~~~~------~~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 123 --QYALMEQDAIKLAAEM------QAEYWSVSALSGENVREFFF 158 (170)
T ss_pred --cccccHHHHHHHHHHc------CCeEEEEECCCCCCHHHHHH
Confidence 1111122223333333 24789999999999998754
No 164
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.64 E-value=1.2e-15 Score=138.77 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=97.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|..++|||||+.+|.. +... +. ..|+......+.....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~--~~~~-------------------------~~-------~~t~~~~~~~~~~~~~ 57 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKL--GESV-------------------------TT-------IPTIGFNVETVTYKNI 57 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------------Cc-------CCccccceEEEEECCE
Confidence 457899999999999999999831 1110 00 0122122223445678
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~ 236 (475)
.+.|+||||+..|...+...++.||++|+|+|++.... + ....+.+..+.. .+.| ++||.||+|+....
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~ 130 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDR---I---DEAREELHRMLNEDELRDAV-ILVFANKQDLPDAM 130 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCC
Confidence 89999999999998887777899999999999886421 1 133444433322 2466 99999999984321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. +++.+.+.. .... ...+.++++||++|.|+.++++
T Consensus 131 -~~---~~i~~~~~~----~~~~-~~~~~~~~~Sa~~g~gv~e~~~ 167 (175)
T smart00177 131 -KA---AEITEKLGL----HSIR-DRNWYIQPTCATSGDGLYEGLT 167 (175)
T ss_pred -CH---HHHHHHhCc----cccC-CCcEEEEEeeCCCCCCHHHHHH
Confidence 11 122222210 0011 1245688999999999998643
No 165
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.64 E-value=7.7e-15 Score=137.98 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=94.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC---Ce
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---TT 160 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~~ 160 (475)
+|+++|..++|||||+++|+... +. .+...-++.+.....+... ..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~~-----------------------------~~~~~T~~~d~~~~~i~~~~~~~~ 50 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--FG-----------------------------KSYKQTIGLDFFSKRVTLPGNLNV 50 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CC-----------------------------CCCCCceeEEEEEEEEEeCCCCEE
Confidence 68999999999999999984311 10 0001112223222333332 46
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc------CCceEEEEEEccCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~------~i~~iivviNKiD~~~ 234 (475)
.+.|+||||+..|.......++.+|++|+|+|+..... |+ ...+.+..+... +.| +|+|.||+|+..
T Consensus 51 ~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s---~~---~~~~w~~~l~~~~~~~~~~~p-iilVgNK~DL~~ 123 (215)
T cd04109 51 TLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS---FE---NLEDWYSMVRKVLKSSETQPL-VVLVGNKTDLEH 123 (215)
T ss_pred EEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhccccCCCce-EEEEEECccccc
Confidence 78999999999888777777899999999999987532 11 223333333322 234 889999999942
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. . ...++...+.+.. .++++++||++|.|+.++++
T Consensus 124 ~~--~----v~~~~~~~~~~~~------~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 124 NR--T----VKDDKHARFAQAN------GMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred cc--c----cCHHHHHHHHHHc------CCEEEEEECCCCCCHHHHHH
Confidence 11 1 1112222333333 24789999999999999754
No 166
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.64 E-value=2.6e-15 Score=134.13 Aligned_cols=147 Identities=19% Similarity=0.151 Sum_probs=91.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEE-eeeeeEEeeC--C
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFETE--T 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti-~~~~~~~~~~--~ 159 (475)
.+|+++|.+|+|||||+++|+... .... . ..|+ +.....+..+ .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~------------------------~-------~~t~~~~~~~~~~~~~~~ 48 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEK------------------------Y-------DPTIEDSYRKQIEVDGQQ 48 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcc------------------------c-------CCchhhhEEEEEEECCEE
Confidence 579999999999999999985321 1100 0 0000 0001112223 3
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..+.|+||||+++|.......++.+|++++|+|...... | ......+..+.. .+.| +|+|.||+|+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 121 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSS---F---NDLQDLREQILRVKDTENVP-MVLVGNKCDLEDE 121 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 567899999999998777777889999999999876532 1 122222223322 2577 8999999998421
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. .. ..++...+.+.. ..+++++||++|.|+.+++
T Consensus 122 ~--~~----~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 122 R--VV----SREEGQALARQW------GCPFYETSAKSKINVDEVF 155 (163)
T ss_pred c--ee----cHHHHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 1 10 111122222322 2589999999999999863
No 167
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.64 E-value=2.4e-15 Score=149.61 Aligned_cols=167 Identities=18% Similarity=0.140 Sum_probs=98.9
Q ss_pred ccccccccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceE
Q 011910 68 DAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT 147 (475)
Q Consensus 68 ~~~~~~~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~t 147 (475)
.+-+.......-+.+..|+++|.+|+|||||+++|......+. + ....|
T Consensus 143 ~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va-------------------------~------y~fTT 191 (329)
T TIGR02729 143 EPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------D------YPFTT 191 (329)
T ss_pred CCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCcccc-------------------------C------CCCCc
Confidence 3333444445566677899999999999999999843211100 0 01223
Q ss_pred EeeeeeEEeeCC-eeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--
Q 011910 148 VEVGRAHFETET-TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-- 217 (475)
Q Consensus 148 i~~~~~~~~~~~-~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-- 217 (475)
.......+.+.+ ..+.|+||||+.. +.....+.+..+|++|+|+|+........+ .+.......+..
T Consensus 192 ~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~---e~l~~l~~EL~~~~ 268 (329)
T TIGR02729 192 LVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPI---EDYEIIRNELKKYS 268 (329)
T ss_pred cCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHH---HHHHHHHHHHHHhh
Confidence 333333344555 8899999999753 233445556789999999998864110001 111112222221
Q ss_pred ---cCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 218 ---LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 218 ---~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.+.| +++|+||+|+... ...+++.+++ .+.. ..+++++||++|.|+.+++.
T Consensus 269 ~~l~~kp-~IIV~NK~DL~~~----~~~~~~~~~l---~~~~------~~~vi~iSAktg~GI~eL~~ 322 (329)
T TIGR02729 269 PELAEKP-RIVVLNKIDLLDE----EELAELLKEL---KKAL------GKPVFPISALTGEGLDELLY 322 (329)
T ss_pred hhhccCC-EEEEEeCccCCCh----HHHHHHHHHH---HHHc------CCcEEEEEccCCcCHHHHHH
Confidence 2566 8899999999432 1222222222 2222 24799999999999998643
No 168
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.64 E-value=1.5e-15 Score=121.21 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=76.5
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC----CeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCC
Q 011910 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 385 (475)
Q Consensus 312 ~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~----~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~ 385 (475)
|+|+|.++| ++.|++++|+|.+|.+++||++.++|.+ ..++|++|+.++.++++|.|||+|+++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999 6889999999999999999999999984 6899999999999999999999999999999999999
Q ss_pred ceeEEec
Q 011910 386 SGFVLSS 392 (475)
Q Consensus 386 ~G~vl~~ 392 (475)
+|++|++
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 169
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.64 E-value=5.5e-15 Score=135.27 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=95.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--e
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 160 (475)
++|+++|..++|||||+.+++.. ..... .....|.... ...+..++ .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~--~f~~~---------------------------~~~T~g~~~~--~~~i~~~~~~~ 49 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEG--EFDED---------------------------YIQTLGVNFM--EKTISIRGTEI 49 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CCCCC---------------------------CCCccceEEE--EEEEEECCEEE
Confidence 36899999999999999998432 11100 0001122221 12333343 6
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCCCch
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~~~~ 238 (475)
.+.|+||+|+..|...+...++.+|++++|+|++.... | ....+.+..++.. ..+ .|+|.||+|+... ..
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s---~---~~i~~~~~~~~~~~~~~~-pilVgnK~Dl~~~-~~ 121 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKST---L---NSIKEWYRQARGFNKTAI-PILVGTKYDLFAD-LP 121 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEEchhcccc-cc
Confidence 68999999999998777777889999999999987532 1 1223334444332 223 2578999998421 11
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
....+.+.++...+.+.. +.+++++||++|.|+.+++.
T Consensus 122 ~~~~~~~~~~~~~~a~~~------~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 122 PEEQEEITKQARKYAKAM------KAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred chhhhhhHHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 111112233444444443 35799999999999999754
No 170
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=8.9e-16 Score=141.60 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=93.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee--CCee
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETTR 161 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~~ 161 (475)
+|+++|..|+|||||+.+|........ +....+..+.....+.. ....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~~ 51 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNG------------------------------NFIATVGIDFRNKVVTVDGVKVK 51 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc------------------------------CcCCcccceeEEEEEEECCEEEE
Confidence 689999999999999999843211000 00011111111112222 3357
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCCch
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~~~ 238 (475)
+.|+||||+..|.......++.+|++|+|+|+..... | ......+..+... ++| +++|+||+|+....
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~-- 122 (191)
T cd04112 52 LQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS---F---DNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGER-- 122 (191)
T ss_pred EEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEEcccchhcc--
Confidence 8999999999998777777889999999999987532 1 1223333334332 567 89999999984211
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ...+...+.+.. .++++++||++|.|+.+++.
T Consensus 123 ~~----~~~~~~~l~~~~------~~~~~e~Sa~~~~~v~~l~~ 156 (191)
T cd04112 123 VV----KREDGERLAKEY------GVPFMETSAKTGLNVELAFT 156 (191)
T ss_pred cc----CHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 00 011222233332 34899999999999999743
No 171
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=3.1e-15 Score=154.51 Aligned_cols=174 Identities=17% Similarity=0.150 Sum_probs=106.0
Q ss_pred ccccccccccccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhh
Q 011910 64 SAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 143 (475)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~ 143 (475)
.+...+-........-+....|+|+|.+|||||||+++|......+ ...
T Consensus 141 ~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkI-------------------------------ady 189 (500)
T PRK12296 141 ALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKI-------------------------------ADY 189 (500)
T ss_pred ccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccc-------------------------------ccc
Confidence 3444444455555556777799999999999999999994321110 011
Q ss_pred cceEEeeeeeEEeeCCeeEEEEeCCCCcCc-------HHHHhhccccCCEEEEEEecCCCcc-ccccCCCcchHHHH-HH
Q 011910 144 KGKTVEVGRAHFETETTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEF-ETGFEKGGQTREHV-ML 214 (475)
Q Consensus 144 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~f-------~~~~~~~~~~~D~~vlVVda~~g~~-e~~~~~~~~t~~~l-~~ 214 (475)
.+.|+......+...+..|.|+||||.... ....++.+..||++|+|||+..... ...++--....+.| .+
T Consensus 190 pfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y 269 (500)
T PRK12296 190 PFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAY 269 (500)
T ss_pred CcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHh
Confidence 345666556667777889999999996421 2234455678999999999974210 00000000111112 11
Q ss_pred H----------HHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 215 A----------KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 215 ~----------~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ...+.| +|||+||+|++.. . .+.+.+...+... .++++++||++|.|+.+++.
T Consensus 270 ~~~l~~~~~~~~l~~kP-~IVVlNKiDL~da---~----el~e~l~~~l~~~------g~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 270 APALDGDLGLGDLAERP-RLVVLNKIDVPDA---R----ELAEFVRPELEAR------GWPVFEVSAASREGLRELSF 333 (500)
T ss_pred hhcccccchhhhhcCCC-EEEEEECccchhh---H----HHHHHHHHHHHHc------CCeEEEEECCCCCCHHHHHH
Confidence 1 123567 8899999999432 1 1222223333332 34799999999999999754
No 172
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.63 E-value=1.2e-15 Score=138.23 Aligned_cols=157 Identities=17% Similarity=0.107 Sum_probs=92.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|++++|||||+.+|.... .... ... ...........+....+.+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~--~~~~---------------------~~~-------t~~~~~~~~~~~~~~~~~~ 50 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA--FPEE---------------------YVP-------TVFDHYAVSVTVGGKQYLL 50 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCC---------------------CCC-------ceeeeeEEEEEECCEEEEE
Confidence 369999999999999999884321 1100 000 0000000111122223557
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHH--HcCCceEEEEEEccCCCCCCchH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAK--TLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~--~~~i~~iivviNKiD~~~~~~~~ 239 (475)
.|+||||+..|.......++.+|++|+|+|...... |+ ... ..+..+. ..+.| +++|.||+|+.......
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~~~ 123 (174)
T cd04135 51 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---FQ---NVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTL 123 (174)
T ss_pred EEEeCCCcccccccccccCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChhhH
Confidence 899999999998777677889999999999987532 11 111 1222222 24677 89999999984321111
Q ss_pred HHHH------HHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~------~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.... -..++...+.+..++ .+++.+||++|.|+.+++
T Consensus 124 ~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~~f 166 (174)
T cd04135 124 ARLNDMKEKPVTVEQGQKLAKEIGA-----HCYVECSALTQKGLKTVF 166 (174)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcCC-----CEEEEecCCcCCCHHHHH
Confidence 0000 001223334444432 379999999999999864
No 173
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=1.3e-15 Score=136.04 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=92.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|.+|+|||||+++|+...- .. +.... .+... .....+......+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~~------------------------~~~~~---~~~~~-~~~~~~~~~~~~~~ 51 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--VE------------------------DYEPT---KADSY-RKKVVLDGEDVQLN 51 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--cc------------------------ccCCc---chhhE-EEEEEECCEEEEEE
Confidence 799999999999999999953211 00 00000 00000 00111222346799
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCchH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~~~ 239 (475)
++||||+..|.......++.+|++++|+|...... |. .....+..... .++| +++|+||+|+.... .
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~--~ 122 (164)
T cd04139 52 ILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMES---FT---ATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKR--Q 122 (164)
T ss_pred EEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEcccccccc--c
Confidence 99999999999888888999999999999876431 11 12222222222 4678 89999999984311 0
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .....+.+.+ .++++++||++|.|+.+++.
T Consensus 123 ~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 123 VSS----EEAANLARQW------GVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred cCH----HHHHHHHHHh------CCeEEEeeCCCCCCHHHHHH
Confidence 011 1112222332 24799999999999999643
No 174
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.63 E-value=3.5e-15 Score=138.57 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=97.0
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 159 (475)
...+|+++|..|+|||||+.+|+... +.. +....+.++.....+...+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FSG-----------------------------SYITTIGVDFKIRTVEINGE 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC-----------------------------CcCccccceeEEEEEEECCE
Confidence 35789999999999999999984211 100 0001111222223333333
Q ss_pred -eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCCC
Q 011910 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 -~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+..|...+...++.+|++|+|+|+..... |. ...+.+..+... .+| ++||+||+|+....
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~ 126 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---FV---NVKRWLQEIEQNCDDVC-KVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 568899999999998888888889999999999987532 11 233333333332 356 88999999984321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ....+...+.+.. ..+++++||++|.|+.+++.
T Consensus 127 --~----~~~~~~~~~~~~~------~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 127 --V----VETEDAYKFAGQM------GISLFETSAKENINVEEMFN 160 (199)
T ss_pred --c----cCHHHHHHHHHHc------CCEEEEEECCCCcCHHHHHH
Confidence 0 0112222333333 35799999999999999754
No 175
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.63 E-value=5.9e-15 Score=132.93 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=91.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee--CCee
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETTR 161 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~~ 161 (475)
+|+++|..++|||||+++++.. .... .....+.+......+.. ....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTG--EFEK-----------------------------KYVATLGVEVHPLDFHTNRGKIR 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCC-----------------------------CCCCceeeEEEEEEEEECCEEEE
Confidence 6899999999999999998521 1110 00011111222222332 3467
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCCCchH
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~~~~~ 239 (475)
+.++||||+.+|.......+..+|++|+|+|++.+... ......+..+... ++| +|+|.||+|+....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~--- 120 (166)
T cd00877 51 FNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTY------KNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK--- 120 (166)
T ss_pred EEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCc-EEEEEEchhccccc---
Confidence 89999999998876655667889999999999876431 1122222333222 577 99999999994211
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+..+...+.+. ...+++++||++|.|+.+++.
T Consensus 121 -----~~~~~~~~~~~------~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 121 -----VKAKQITFHRK------KNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred -----CCHHHHHHHHH------cCCEEEEEeCCCCCChHHHHH
Confidence 00111112222 245899999999999999754
No 176
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.63 E-value=2.8e-15 Score=135.21 Aligned_cols=147 Identities=15% Similarity=0.168 Sum_probs=94.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|..++|||||+++|... ... ....|+......+...+..++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~-------------------------------~~~~t~g~~~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK-------------------------------KVAPTVGFTPTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc-------------------------------cccCcccceEEEEEECCEEEE
Confidence 4899999999999999988421 100 011122222334556788999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCchH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~~~ 239 (475)
++|+||+..|...+...+..||++|+|+|+..... + ...+..+..+.. .+.| +++|+||+|+.... .
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~- 117 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDR---V---QEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-L- 117 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhH---H---HHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC-C-
Confidence 99999999998888888899999999999987421 1 123333333322 3667 99999999995432 1
Q ss_pred HHHHHHHhhh--hhHhhhhcCcccCCeeEEEeecccc------ccccc
Q 011910 240 ERYDEIESKM--TPFLKASGYNVKKDVQFLPISGLMG------LNMKT 279 (475)
Q Consensus 240 ~~~~~i~~~l--~~~l~~~~~~~~~~~~iipiSa~~g------~gi~~ 279 (475)
..++.+.+ ..+.++.+ ..++++++||++| .|+.+
T Consensus 118 --~~~i~~~~~l~~~~~~~~----~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 118 --GADVIEYLSLEKLVNENK----SLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred --HHHHHHhcCcccccCCCC----ceEEEEEeEceeCCCCccccCHHH
Confidence 12222222 12211111 2468999999998 67765
No 177
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.63 E-value=1.3e-15 Score=137.78 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=95.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|+.|+|||||+++|....- . ......|.+ ...+...+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~--~----------------------------~~~~t~g~~----~~~i~~~~ 57 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDI--S----------------------------HITPTQGFN----IKTVQSDG 57 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCC--c----------------------------ccCCCCCcc----eEEEEECC
Confidence 3457899999999999999999832100 0 000112222 22344567
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHH----HHHcCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKTLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~----~~~~~i~~iivviNKiD~~~~ 235 (475)
..+.++|+||+..|...+...++.+|++++|+|+..... + ......+.. ....++| +++++||+|+...
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKR---L---EEAGAELVELLEEEKLAGVP-VLVFANKQDLATA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC
Confidence 889999999999888777777889999999999976321 1 122222222 2234678 8999999998432
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ..+.+.+.+. ...+. ....+++++||++|.|+++++
T Consensus 131 ~----~~~~i~~~l~----~~~~~-~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 131 A----PAEEIAEALN----LHDLR-DRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred C----CHHHHHHHcC----CcccC-CCeEEEEEeECCCCCCHHHHH
Confidence 1 1222222221 11111 123468899999999999853
No 178
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.63 E-value=4.4e-15 Score=131.38 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=93.4
Q ss_pred EEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEEE
Q 011910 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 164 (475)
Q Consensus 85 v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 164 (475)
|+++|+.|+|||||+++|....- . .+. .. |+......+...+..+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~--~------------------------~~~-----~~--t~~~~~~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF--S------------------------EDT-----IP--TVGFNMRKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC--C------------------------cCc-----cC--CCCcceEEEEECCEEEEE
Confidence 78999999999999999832210 0 000 01 111122234456688999
Q ss_pred EeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCchHH
Q 011910 165 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 165 iDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~~~~ 240 (475)
+||||+..|...+...+..+|++++|+|+..... + .+..+.+..+.. .+.| +++|+||+|+....
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~---- 117 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA---L---EAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGAL---- 117 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCc----
Confidence 9999999998888888899999999999986421 0 123333333322 4677 89999999984321
Q ss_pred HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 241 ~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
..+.+...+. +... . ...++++++|+++|.|+.++
T Consensus 118 ~~~~~~~~~~--~~~~--~-~~~~~~~~~Sa~~~~gi~~l 152 (159)
T cd04159 118 SVDELIEQMN--LKSI--T-DREVSCYSISCKEKTNIDIV 152 (159)
T ss_pred CHHHHHHHhC--cccc--c-CCceEEEEEEeccCCChHHH
Confidence 1112222111 0111 0 12468999999999999985
No 179
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.63 E-value=2.6e-15 Score=135.01 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=95.2
Q ss_pred EEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEEE
Q 011910 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 164 (475)
Q Consensus 85 v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 164 (475)
|+++|..++|||||+.+|..... ... ...|+......+...+..+.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~--~~~-------------------------------~~pt~g~~~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS--LES-------------------------------VVPTTGFNSVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC--ccc-------------------------------ccccCCcceEEEeeCCeEEEE
Confidence 78999999999999999843211 000 001111112345567788999
Q ss_pred EeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCCCchHHHH
Q 011910 165 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKERY 242 (475)
Q Consensus 165 iDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~~~~~~~~ 242 (475)
+||||+.+|...+...++.+|++|+|+|+..... | ...+..+..+.. .++| +++|.||+|+.... ..
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s---~---~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~----~~ 117 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSER---L---PLARQELHQLLQHPPDLP-LVVLANKQDLPAAR----SV 117 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC----CH
Confidence 9999999998888888999999999999887531 1 123333333322 4677 99999999984332 12
Q ss_pred HHHHhh--hhhHhhhhcCcccCCeeEEEeeccc------cccccccc
Q 011910 243 DEIESK--MTPFLKASGYNVKKDVQFLPISGLM------GLNMKTRV 281 (475)
Q Consensus 243 ~~i~~~--l~~~l~~~~~~~~~~~~iipiSa~~------g~gi~~l~ 281 (475)
..+.+. +..+.++ ..++++++||++ |+|+.+++
T Consensus 118 ~~i~~~~~~~~~~~~------~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 118 QEIHKELELEPIARG------RRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHhCChhhcCC------CceEEEEeeecCCCChhHHHHHHHHH
Confidence 222222 2222222 356789999988 88988853
No 180
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.63 E-value=1.4e-15 Score=136.32 Aligned_cols=148 Identities=20% Similarity=0.186 Sum_probs=92.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--Ce
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 160 (475)
.+|+++|.+|+|||||+.+++. +...... + ...+.+. ...+... ..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~--~~~~~~~----------------------~-----~t~~~~~---~~~~~~~~~~~ 49 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQ--GIFVEKY----------------------D-----PTIEDSY---RKQVEVDGQQC 49 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHh--CCCCccc----------------------C-----CcchheE---EEEEEECCEEE
Confidence 4799999999999999999842 2111100 0 0001111 1123333 45
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~~ 236 (475)
.+.|+||||+..|...+...++.+|++|+|+|...... |+ .....+..+. ..++| +++|+||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 122 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECCcchhcc
Confidence 67899999999999888888899999999999876532 11 1222222222 23577 99999999984211
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
... ..+...+.+.. ..+++++||++|.|+.+++
T Consensus 123 --~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 123 --VVG----KEQGQNLARQW------GCAFLETSAKAKINVNEIF 155 (164)
T ss_pred --EEc----HHHHHHHHHHh------CCEEEEeeCCCCCCHHHHH
Confidence 000 11122233333 3489999999999999864
No 181
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=3.4e-15 Score=151.49 Aligned_cols=164 Identities=19% Similarity=0.132 Sum_probs=99.0
Q ss_pred cccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeee
Q 011910 73 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR 152 (475)
Q Consensus 73 ~~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~ 152 (475)
......-+....|+|+|.+|+|||||+++|......+ ....+.|.....
T Consensus 150 ~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~v-------------------------------s~~p~TT~~p~~ 198 (390)
T PRK12298 150 RELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKV-------------------------------ADYPFTTLVPNL 198 (390)
T ss_pred EEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccc-------------------------------cCCCCCccCcEE
Confidence 3334444555689999999999999999994321110 011344544444
Q ss_pred eEEeeCC-eeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-----cC
Q 011910 153 AHFETET-TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LG 219 (475)
Q Consensus 153 ~~~~~~~-~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-----~~ 219 (475)
..+...+ ..|.|+||||... ....++..+..+|++++|||+....... ...+....+..+.. .+
T Consensus 199 Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d---~~e~~~~l~~eL~~~~~~L~~ 275 (390)
T PRK12298 199 GVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSD---PVENARIIINELEKYSPKLAE 275 (390)
T ss_pred EEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccC---hHHHHHHHHHHHHhhhhhhcC
Confidence 4455554 4699999999743 3345566788999999999987210000 00122333333333 24
Q ss_pred CceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 220 VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 220 i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.| +|+|+||+|+... ..+ .+.+..+.+..++ ..+++++||+++.|+.++..
T Consensus 276 kP-~IlVlNKiDl~~~----~el---~~~l~~l~~~~~~----~~~Vi~ISA~tg~GIdeLl~ 326 (390)
T PRK12298 276 KP-RWLVFNKIDLLDE----EEA---EERAKAIVEALGW----EGPVYLISAASGLGVKELCW 326 (390)
T ss_pred CC-EEEEEeCCccCCh----HHH---HHHHHHHHHHhCC----CCCEEEEECCCCcCHHHHHH
Confidence 67 7899999998432 122 2222233333322 23689999999999998744
No 182
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=2e-15 Score=140.07 Aligned_cols=150 Identities=19% Similarity=0.199 Sum_probs=91.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--ee
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 161 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 161 (475)
+|+++|+.|+|||||+++|+... .... + ...+.......+...+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~~---------------------~---------~~t~~~~~~~~~~~~~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEPK---------------------Y---------RRTVEEMHRKEYEVGGVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcc---------------------C---------CCchhhheeEEEEECCEEEE
Confidence 48999999999999999985321 1100 0 0000011112233333 57
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCc
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~ 237 (475)
++|+||||+..|.......+..+|++|+|+|+.++.. |+ .....+..+.. .++| +|+|+||+|+....
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~- 120 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPES---FE---EVERLREEILEVKEDKFVP-IVVVGNKADSLEEE- 120 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEEcccccccc-
Confidence 8999999999998777777889999999999987532 11 12222222222 3677 89999999984321
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.....+... .... .. ...+++++||++|.|+.+++.
T Consensus 121 ~~v~~~~~~----~~~~-~~----~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 121 RQVPAKDAL----STVE-LD----WNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred ccccHHHHH----HHHH-hh----cCCcEEEecCCCCCCHHHHHH
Confidence 100111111 1111 11 135789999999999998743
No 183
>PTZ00369 Ras-like protein; Provisional
Probab=99.62 E-value=3.5e-15 Score=137.36 Aligned_cols=153 Identities=20% Similarity=0.140 Sum_probs=95.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|+.|+|||||+.+++.... ... + . ...+.+. .....+.....
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~---------------------~-~-----~t~~~~~-~~~~~~~~~~~ 53 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHF--IDE---------------------Y-D-----PTIEDSY-RKQCVIDEETC 53 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC--CcC---------------------c-C-----CchhhEE-EEEEEECCEEE
Confidence 347899999999999999999853211 000 0 0 0001111 11122333346
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~ 236 (475)
.+.|+||||+.+|...+...++.+|++|+|+|++.... |+ .....+..+.. .++| +++|.||+|+....
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSS---FE---EIASFREQILRVKDKDRVP-MILVGNKCDLDSER 126 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 68899999999999888888899999999999987642 11 22332222222 2667 99999999984221
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.-. ..+...+.+.. ..+++++||++|.|+.+++.
T Consensus 127 --~i~----~~~~~~~~~~~------~~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 127 --QVS----TGEGQELAKSF------GIPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred --ccC----HHHHHHHHHHh------CCEEEEeeCCCCCCHHHHHH
Confidence 000 11122223332 34799999999999998754
No 184
>PLN03118 Rab family protein; Provisional
Probab=99.62 E-value=4.2e-15 Score=139.35 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=95.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|+.++|||||+.+|+... +.. .....|.+.......+.....
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~--~~~----------------------------~~~t~~~~~~~~~~~~~~~~~ 62 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSS--VED----------------------------LAPTIGVDFKIKQLTVGGKRL 62 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC--CCC----------------------------cCCCceeEEEEEEEEECCEEE
Confidence 45789999999999999999984321 100 001122222222222322346
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHH-HHHHH----cCCceEEEEEEccCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l-~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
.+.|+||||+.+|.......++.+|++|||+|+..... |. ...+.+ ..+.. .+.| +++|+||+|+...
T Consensus 63 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s---f~---~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~ 135 (211)
T PLN03118 63 KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET---FT---NLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESE 135 (211)
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 78999999999998888888899999999999987532 11 111111 11211 2456 8899999998432
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ... .++...+.+.. .++++++||++|.|+.+++.
T Consensus 136 ~--~i~----~~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 136 R--DVS----REEGMALAKEH------GCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred C--ccC----HHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 000 11122222322 35799999999999999754
No 185
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.62 E-value=2.9e-15 Score=138.25 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=94.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--e
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 160 (475)
++|+++|.+++|||||+++|+... .... . .....|.+... ..+..++ .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~--~~~~------------------------~--~~~t~~~~~~~--~~~~~~~~~~ 50 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR--FLVG------------------------P--YQNTIGAAFVA--KRMVVGERVV 50 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--cCCc------------------------C--cccceeeEEEE--EEEEECCEEE
Confidence 379999999999999999984321 1100 0 00001112211 1233333 4
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCCCch
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~~~~ 238 (475)
.+.|+||||+..|.......++.+|++|+|+|+..... |+ .....+..+... +.| +++|+||+|+......
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~ 123 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS---FE---RAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRS 123 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHhcCCCCC-EEEEEEcccccccccc
Confidence 57799999999887776666789999999999976532 11 223333334333 577 9999999998432100
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... ....++..+.... ..+++++||++|.|+.++++
T Consensus 124 ~~~--v~~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 124 LRQ--VDFHDVQDFADEI------KAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred cCc--cCHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 000 0112233333332 34789999999999998754
No 186
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.62 E-value=4.2e-15 Score=133.75 Aligned_cols=153 Identities=21% Similarity=0.253 Sum_probs=93.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|+.++|||||+++|+.. ..... +... ....++. ..+......++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~--~~~~~------------------~~~~--------~~~~~~~---~~~~~~~~~~~ 50 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSE--EFPEN------------------VPRV--------LPEITIP---ADVTPERVPTT 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--cCCcc------------------CCCc--------ccceEee---eeecCCeEEEE
Confidence 6899999999999999998532 11100 0000 0011111 11223457899
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHH--cCCceEEEEEEccCCCCCCchHH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~--~~i~~iivviNKiD~~~~~~~~~ 240 (475)
+|||||+..|...+...+..+|+++||+|+..+.. |+ +.. ..+..++. .+.| +++|+||+|+.... ...
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~-~~~ 122 (166)
T cd01893 51 IVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST---LE---RIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGS-SQA 122 (166)
T ss_pred EEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhccccc-chh
Confidence 99999999888777777889999999999987642 11 111 22233332 3567 99999999994322 100
Q ss_pred HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 241 ~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.....+..+.+... ...+++++||++|.|+.+++.
T Consensus 123 ---~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 123 ---GLEEEMLPIMNEFR----EIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ---HHHHHHHHHHHHHh----cccEEEEeccccccCHHHHHH
Confidence 11222222222221 013799999999999998643
No 187
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.62 E-value=3.2e-15 Score=137.03 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=98.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|..|+|||||+++|... .+.. + ..|.......+...+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~--~~~~----------------------~----------~~t~~~~~~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKND--RLAQ----------------------H----------QPTQHPTSEELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcC--CCcc----------------------c----------CCccccceEEEEECC
Confidence 44588999999999999999998421 1000 0 011111223345567
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~ 235 (475)
..+.++||||+..+...+...+..+|++|+|+|+..... + ...++.+..+. ..+.| +++|+||+|++..
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKER---F---AESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 889999999999988877788899999999999986521 1 12333333222 24677 9999999998532
Q ss_pred CchHHHHHHHHhhhhhH--hhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPF--LKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~--l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.+. +++.+.+... ....+........++++||++|.|+.+++
T Consensus 134 -~~~---~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~ 177 (184)
T smart00178 134 -ASE---DELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGF 177 (184)
T ss_pred -CCH---HHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHH
Confidence 122 2333333210 00000000125579999999999999853
No 188
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=7.7e-15 Score=129.04 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=115.7
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
......|++.|..++||||++.++............ + .+.. ...|..|+...+.++...
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~------------~-------~~s~--k~kr~tTva~D~g~~~~~ 65 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADA------------S-------SVSG--KGKRPTTVAMDFGSIELD 65 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccc------------c-------cccc--ccccceeEeecccceEEc
Confidence 344568999999999999999999655432221000 0 0000 003557777777777776
Q ss_pred C-eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC-CceEEEEEEccCCCCCC
Q 011910 159 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 159 ~-~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~-i~~iivviNKiD~~~~~ 236 (475)
+ ..+.|+|||||.+|-..+.-.++.++++|++||++.+.. ...++.+......+ +| ++|++||.|++++
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~-------~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a- 136 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPIT-------FHAEEIIDFLTSRNPIP-VVVAINKQDLFDA- 136 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcc-------hHHHHHHHHHhhccCCC-EEEEeeccccCCC-
Confidence 6 899999999999999999888999999999999998743 23466777777777 77 9999999999765
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
|+.+.+++ +++... ..+++|+++|..+++..+.
T Consensus 137 ~ppe~i~e-------~l~~~~----~~~~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 137 LPPEKIRE-------ALKLEL----LSVPVIEIDATEGEGARDQ 169 (187)
T ss_pred CCHHHHHH-------HHHhcc----CCCceeeeecccchhHHHH
Confidence 44433333 232221 2579999999999988773
No 189
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.62 E-value=1.4e-15 Score=143.04 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=97.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|..++|||||+.+|+... +. + ...|+........+....+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~--f~-------------------------~-------~~~Tig~~~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR--FK-------------------------D-------TVSTVGGAFYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC--CC-------------------------C-------CCCccceEEEEEEeeEEEE
Confidence 368999999999999999984211 10 0 0112222222233456789
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCCchH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~~~~ 239 (475)
.||||||+..|.......++.+|++|+|+|++.... |+ .....+..+.. .++| +|+|.||+|+... +..
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S---f~---~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~-~~~ 118 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS---LE---ELEDRFLGLTDTANEDCL-FAVVGNKLDLTEE-GAL 118 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECcccccc-ccc
Confidence 999999999998877777889999999999987532 11 22222222222 2466 8999999998431 000
Q ss_pred --------------HHHHHHHhhhhhHhhhhc--------CcccCCeeEEEeecccccccccccc
Q 011910 240 --------------ERYDEIESKMTPFLKASG--------YNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 240 --------------~~~~~i~~~l~~~l~~~~--------~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
....-..++...+.++.+ +.+...++++++||++|.|+.+++.
T Consensus 119 ~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~ 183 (220)
T cd04126 119 AGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFE 183 (220)
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHH
Confidence 000111223333444332 1111236899999999999999754
No 190
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=2.7e-15 Score=138.27 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=91.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--ee
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 161 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 161 (475)
+|+++|..|+|||||+++|+. +.+.... ... .+... .......+ ..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~--~~f~~~~----------------------~~t-----~~~~~---~~~~~~~~~~~~ 48 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL--NHFVETY----------------------DPT-----IEDSY---RKQVVVDGQPCM 48 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCccC----------------------CCc-----hHhhE---EEEEEECCEEEE
Confidence 489999999999999999853 2111100 000 00000 01122233 45
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH------cCCceEEEEEEccCCCCC
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~------~~i~~iivviNKiD~~~~ 235 (475)
+.|+||||+.+|.......++.+|++|+|+|.+..... + .....+..+.. .++| +|+|.||+|+...
T Consensus 49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~---~---~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~ 121 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTF---E---RVERFREQIQRVKDESAADVP-IMIVGNKCDKVYE 121 (190)
T ss_pred EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHH---H---HHHHHHHHHHHHhcccCCCCC-EEEEEEChhcccc
Confidence 88999999999998888888999999999999875431 1 22233332322 2567 8999999998421
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. .-.. .....+.+.. .++++++||++|.|+.+++.
T Consensus 122 ~--~v~~----~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 122 R--EVST----EEGAALARRL------GCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred C--ccCH----HHHHHHHHHh------CCEEEEecCCCCCCHHHHHH
Confidence 1 1011 1122233333 34799999999999999754
No 191
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=8.4e-15 Score=149.46 Aligned_cols=165 Identities=21% Similarity=0.214 Sum_probs=100.3
Q ss_pred cccccccccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcce
Q 011910 67 EDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK 146 (475)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ 146 (475)
..+-+.......-+....|+++|.+|+|||||+++|......+. ...+.
T Consensus 143 G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa-------------------------------~ypfT 191 (424)
T PRK12297 143 GEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIA-------------------------------NYHFT 191 (424)
T ss_pred CCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccc-------------------------------cCCcc
Confidence 33433444445556666899999999999999999943211110 01334
Q ss_pred EEeeeeeEEeeC-CeeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-
Q 011910 147 TVEVGRAHFETE-TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT- 217 (475)
Q Consensus 147 ti~~~~~~~~~~-~~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~- 217 (475)
|.......+.+. +..|.|+|+||... .....++.+..+|++|+|||++.......+ .........+..
T Consensus 192 Tl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~---e~~~~i~~EL~~y 268 (424)
T PRK12297 192 TLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI---EDYEKINKELKLY 268 (424)
T ss_pred eeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH---HHHHHHHHHHhhh
Confidence 555544445555 68899999999742 233445556779999999998642100000 112222223322
Q ss_pred ----cCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 218 ----LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 218 ----~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.+.| +|||+||+|+... .+.++. +.+.++ .+++++||++|.|+.+++.
T Consensus 269 ~~~L~~kP-~IVV~NK~DL~~~---~e~l~~-------l~~~l~------~~i~~iSA~tgeGI~eL~~ 320 (424)
T PRK12297 269 NPRLLERP-QIVVANKMDLPEA---EENLEE-------FKEKLG------PKVFPISALTGQGLDELLY 320 (424)
T ss_pred chhccCCc-EEEEEeCCCCcCC---HHHHHH-------HHHHhC------CcEEEEeCCCCCCHHHHHH
Confidence 3567 8899999998321 122222 222222 3799999999999999754
No 192
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.62 E-value=3.5e-15 Score=135.10 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=91.9
Q ss_pred EEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--CeeE
Q 011910 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTRF 162 (475)
Q Consensus 85 v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~~ 162 (475)
|+++|..++|||||+++|+. +.+... + ...+. ......+..+ ...+
T Consensus 1 i~i~G~~~vGKTsli~~~~~--~~~~~~---------------------~--------~~~~~-~~~~~~~~~~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT--NAFPED---------------------Y--------VPTVF-ENYSADVEVDGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh--CCCCCC---------------------C--------CCcEE-eeeeEEEEECCEEEEE
Confidence 58999999999999999843 211100 0 00000 0001112223 3468
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCCCchHH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~~~~~~ 240 (475)
.|+||||+..|.......+..+|++|+|+|++.... |+ ......+..+.. .+.| +|+|.||+|+........
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~--~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~ 122 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPAS---FE--NVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLR 122 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhh
Confidence 999999999998777677889999999999986521 11 111112223322 2677 999999999843110000
Q ss_pred HHH------HHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 241 RYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 241 ~~~------~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.+. -..++...+.+..++ .+++++||++|.|+.+++.
T Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf~ 165 (174)
T smart00174 123 ELSKQKQEPVTYEQGEALAKRIGA-----VKYLECSALTQEGVREVFE 165 (174)
T ss_pred hhhcccCCCccHHHHHHHHHHcCC-----cEEEEecCCCCCCHHHHHH
Confidence 000 011223334444432 3799999999999999743
No 193
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=4.1e-15 Score=132.43 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=91.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee--CCe
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 160 (475)
.+|+++|..++|||||+++|+..... . ......+.......+.. ...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN--E-----------------------------KHESTTQASFFQKTVNIGGKRI 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--C-----------------------------CcCCccceeEEEEEEEECCEEE
Confidence 37999999999999999999532110 0 00011111111112222 234
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCCc
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~~ 237 (475)
.+.++||||+..|.......+..+|++++|+|+.++... ......+..+.. .++| +++|+||+|+....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~- 121 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSF------QKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQR- 121 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCCe-EEEEEECccccccc-
Confidence 689999999998877776677899999999999876421 122222222222 2567 89999999984221
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+... +.+..+.+.. ..+++++|+++|.|+.+++
T Consensus 122 -~~~~----~~~~~~~~~~------~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 122 -VVSK----SEAEEYAKSV------GAKHFETSAKTGKGIEELF 154 (162)
T ss_pred -CCCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 1011 1222233332 3478999999999999864
No 194
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.61 E-value=3.7e-15 Score=136.43 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=95.7
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|..++|||||+.++.. +... .. ....|.. ...+...+.
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~--~~~~-------------------------~~---~~T~~~~----~~~~~~~~~ 61 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKL--GEVV-------------------------TT---IPTIGFN----VETVEYKNL 61 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCcc-------------------------cc---CCccccc----eEEEEECCE
Confidence 347899999999999999998831 1110 00 0011221 223445778
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~ 236 (475)
.+.++||||+..|...+...++.+|++|+|+|++.... |. ...+.+..... ...| ++||.||.|+....
T Consensus 62 ~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s---~~---~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~ 134 (182)
T PTZ00133 62 KFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRER---IG---DAREELERMLSEDELRDAV-LLVFANKQDLPNAM 134 (182)
T ss_pred EEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCC
Confidence 99999999999998887788899999999999876321 11 22333332221 2456 99999999984321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. +++...+. ...+. ...+.++++||++|.|+.++++
T Consensus 135 -~~---~~i~~~l~----~~~~~-~~~~~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 135 -ST---TEVTEKLG----LHSVR-QRNWYIQGCCATTAQGLYEGLD 171 (182)
T ss_pred -CH---HHHHHHhC----CCccc-CCcEEEEeeeCCCCCCHHHHHH
Confidence 11 12222221 11111 1245678999999999999644
No 195
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.61 E-value=6.1e-15 Score=132.08 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=93.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe-eCCee
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TETTR 161 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~~~~ 161 (475)
++|+++|..++|||||+.+|.......... .....|..+......+. .....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---------------------------YLMTTGCDFVVKEVPVDTDNTVE 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---------------------------CCCceEEEEEEEEEEeCCCCEEE
Confidence 379999999999999999884321111000 00012222222222222 23477
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCCCchH
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~~~~~ 239 (475)
+.++||||+..|...+...+..+|++++|+|.+..... ......+..+.. .+.| +|+|+||+|+......
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~- 125 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASF------ENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEV- 125 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhCCCCC-EEEEEECcccccccCC-
Confidence 99999999999888777788899999999999865321 122233333333 3577 8999999998432100
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. .....+.... ..+++++||++|.|+.+++
T Consensus 126 -~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 156 (164)
T cd04101 126 -TD----AQAQAFAQAN------QLKFFKTSALRGVGYEEPF 156 (164)
T ss_pred -CH----HHHHHHHHHc------CCeEEEEeCCCCCChHHHH
Confidence 00 0111111221 3579999999999999864
No 196
>PLN03110 Rab GTPase; Provisional
Probab=99.61 E-value=5.7e-15 Score=138.93 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=97.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 158 (475)
...+|+++|+.++|||||+.+|+...-. .+....+..+.....+...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-------------------------------~~~~~t~g~~~~~~~v~~~~~ 59 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-------------------------------LESKSTIGVEFATRTLQVEGK 59 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCceeEEEEEEEEEECCE
Confidence 4579999999999999999998432110 0011112222222333333
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~ 235 (475)
...+.|+||||+..|.......++.+|++|+|+|...... | ......+..+.. .++| +++|.||+|+...
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~ 132 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---F---DNVQRWLRELRDHADSNIV-IMMAGNKSDLNHL 132 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEEChhcccc
Confidence 3578999999999998877778899999999999986532 1 122333333333 3577 8999999998321
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. .... +....+.... .++++++||++|.|+.+++.
T Consensus 133 ~--~~~~----~~~~~l~~~~------~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 133 R--SVAE----EDGQALAEKE------GLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred c--CCCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 0000 1111122222 45899999999999999754
No 197
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.61 E-value=2.7e-15 Score=119.86 Aligned_cols=83 Identities=33% Similarity=0.548 Sum_probs=77.2
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCC--CCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCce
Q 011910 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 387 (475)
Q Consensus 312 ~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (475)
|+|+|.++| ++.|++++|+|.+|++++||+|.+.|. +..++|+||++++.++++|.|||.|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 689999999 578999999999999999999999986 5678999999999999999999999999999988899999
Q ss_pred eEEecCC
Q 011910 388 FVLSSVA 394 (475)
Q Consensus 388 ~vl~~~~ 394 (475)
++|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999863
No 198
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.61 E-value=9.6e-15 Score=132.65 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=93.9
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEe-e--eeeEEeeCC
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-V--GRAHFETET 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~-~--~~~~~~~~~ 159 (475)
.+|+++|..++|||||+.+++. +..... ...|+. . ....+....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 48 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT--NAFPGE-------------------------------YIPTVFDNYSANVMVDGKP 48 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCc-------------------------------CCCcceeeeEEEEEECCEE
Confidence 5799999999999999998843 211100 001110 0 011122233
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHH--cCCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~--~~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+..|...+...++.+|++|+|+|.+.... |+ ... .++..+.. .++| +|+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---f~---~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~ 121 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 121 (174)
T ss_pred EEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhccCh
Confidence 678899999999998777777889999999999987532 11 221 22332322 2577 99999999994322
Q ss_pred chHHHHHHH------HhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEI------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i------~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+..+..... .++...+.++.+ .++++++||++|.|+++++
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~f 167 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQKGLKTVF 167 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEecccccCCHHHHH
Confidence 111111110 122223333332 2489999999999999864
No 199
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=8.6e-15 Score=133.08 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=105.0
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++..+|+++|..+||||||+.+|.. +... ....|+......+...
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~--~~~~--------------------------------~~~pT~g~~~~~i~~~ 56 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKN--GEIS--------------------------------ETIPTIGFNIEEIKYK 56 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHS--SSEE--------------------------------EEEEESSEEEEEEEET
T ss_pred cCcEEEEEEECCCccchHHHHHHhhh--cccc--------------------------------ccCcccccccceeeeC
Confidence 36778999999999999999999831 1110 0223444444567778
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~ 234 (475)
+..+.++|.+|+..+...+-..+..+|++|+|||+.+..- + ...++.+..+.. .++| ++|++||.|++.
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~---l---~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~ 129 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER---L---QEAKEELKELLNDPELKDIP-ILILANKQDLPD 129 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG---H---HHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTT
T ss_pred cEEEEEEeccccccccccceeeccccceeEEEEeccccee---e---cccccchhhhcchhhcccce-EEEEeccccccC
Confidence 9999999999999988888888889999999999986421 1 234444443322 2567 999999999964
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+- .. +++...+. +..+ .....+.++++||++|+|+.+.
T Consensus 130 ~~-~~---~~i~~~l~--l~~l--~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 130 AM-SE---EEIKEYLG--LEKL--KNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp SS-TH---HHHHHHTT--GGGT--TSSSCEEEEEEBTTTTBTHHHH
T ss_pred cc-hh---hHHHhhhh--hhhc--ccCCceEEEeeeccCCcCHHHH
Confidence 32 22 23333221 1112 1124678999999999999884
No 200
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.61 E-value=2.9e-15 Score=150.38 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=92.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-CC
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 159 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~ 159 (475)
..+.|+++|++|+|||||+++|..... + .....+.|.+.....+.. .+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~------------------------------v~~~~~tT~d~~~~~i~~~~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-Y------------------------------AADQLFATLDPTTRRLDLPDG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-e------------------------------eccCCccccCCEEEEEEeCCC
Confidence 447899999999999999999943210 0 001134555555555666 46
Q ss_pred eeEEEEeCCCCc-Cc-------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEE
Q 011910 160 TRFTILDAPGHK-SY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVN 228 (475)
Q Consensus 160 ~~~~liDtPGh~-~f-------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviN 228 (475)
..+.|+||||+. +. +..+...+..||++|+|+|++++... .+.......+... +.| +|+|+|
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~------~~~~~~~~~L~~l~~~~~p-iIlV~N 309 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE------EQIEAVEKVLEELGAEDIP-QLLVYN 309 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH------HHHHHHHHHHHHhccCCCC-EEEEEE
Confidence 789999999982 21 22233456789999999999876431 1222222333333 566 899999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
|+|+... .... .... + ..+++++||++|.|++++.
T Consensus 310 K~Dl~~~----~~v~-------~~~~--~-----~~~~i~iSAktg~GI~eL~ 344 (351)
T TIGR03156 310 KIDLLDE----PRIE-------RLEE--G-----YPEAVFVSAKTGEGLDLLL 344 (351)
T ss_pred eecCCCh----HhHH-------HHHh--C-----CCCEEEEEccCCCCHHHHH
Confidence 9999421 1111 1111 1 1368999999999999853
No 201
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.61 E-value=3.1e-15 Score=155.18 Aligned_cols=142 Identities=20% Similarity=0.236 Sum_probs=98.0
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|++|+|||||+++|+.....+ .....|.|.+.....+.+.+.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------v~~~~gtT~d~~~~~i~~~g~ 263 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI------------------------------VTDIAGTTRDVIEEHINLDGI 263 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCcccccEEEEEEECCe
Confidence 34789999999999999999995321110 111256677766677778889
Q ss_pred eEEEEeCCCCcCcHH--------HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 161 RFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 161 ~~~liDtPGh~~f~~--------~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.|+||||+.++.. .+...+..+|++|+|+|+..+... ...+.+.. ..+.| +++|+||+|+
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~-------~~~~~l~~--~~~~p-iiiV~NK~DL 333 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTE-------EDDEILEE--LKDKP-VIVVLNKADL 333 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCh-------hHHHHHHh--cCCCC-cEEEEEhhhc
Confidence 999999999976532 233457789999999999876431 22222222 34667 8999999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... . .. .. ...+++++||++|.|++++.+
T Consensus 334 ~~~~--~--~~----------~~------~~~~~i~iSAktg~GI~~L~~ 363 (449)
T PRK05291 334 TGEI--D--LE----------EE------NGKPVIRISAKTGEGIDELRE 363 (449)
T ss_pred cccc--h--hh----------hc------cCCceEEEEeeCCCCHHHHHH
Confidence 4321 0 00 11 134789999999999998644
No 202
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.61 E-value=4.5e-15 Score=133.68 Aligned_cols=158 Identities=13% Similarity=0.101 Sum_probs=93.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|..++|||||+++|+...- ... . .............+......+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~--~~~------------------------~----~~~~~~~~~~~~~~~~~~~~l 50 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF--PTE------------------------Y----VPTVFDNYSATVTVDGKQVNL 50 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCC------------------------C----CCceeeeeEEEEEECCEEEEE
Confidence 4789999999999999999843211 000 0 000000011111222334579
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCCCchHH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~~~~~~ 240 (475)
.++||||+..|.......+..+|++++|+|+..... |. ....+.+..+... +.| +++|+||+|+........
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~ 124 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSS---FE--NVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLK 124 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhh
Confidence 999999999886665566788999999999987432 11 1222233333332 477 999999999854321100
Q ss_pred H-----HHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 241 R-----YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 241 ~-----~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ..-...+...+....+ ..+++++||++|.|+.+++
T Consensus 125 ~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~ 165 (171)
T cd00157 125 KLEKGKEPITPEEGEKLAKEIG-----AIGYMECSALTQEGVKEVF 165 (171)
T ss_pred hcccCCCccCHHHHHHHHHHhC-----CeEEEEeecCCCCCHHHHH
Confidence 0 0001222333444433 2389999999999999863
No 203
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=3.4e-15 Score=134.63 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=92.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|.+|+|||||+++|+... .... .+. ..+... .....+......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~--~~~~----------------------~~~-----t~~~~~-~~~~~~~~~~~~~ 51 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV--FIES----------------------YDP-----TIEDSY-RKQVEIDGRQCDL 51 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcc----------------------cCC-----cchheE-EEEEEECCEEEEE
Confidence 479999999999999999984221 1000 000 000000 1111122233578
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHH----HHcCCceEEEEEEccCCCCCCch
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~----~~~~i~~iivviNKiD~~~~~~~ 238 (475)
.++||||+.+|...+...+..+|++|+|+|...... ++ ........+ ...++| ++++.||+|+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~-- 122 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEAS---LN---ELGELREQVLRIKDSDNVP-MVLVGNKADLEDDR-- 122 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCC-EEEEEEChhccccC--
Confidence 999999999998888888889999999999887532 11 111112222 123678 88999999984321
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. ..++...+.+..+ .++++++||++|.|+.+++
T Consensus 123 ~~----~~~~~~~~~~~~~-----~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 123 QV----SREDGVSLSQQWG-----NVPFYETSARKRTNVDEVF 156 (168)
T ss_pred cc----CHHHHHHHHHHcC-----CceEEEeeCCCCCCHHHHH
Confidence 11 1111222223322 3589999999999999863
No 204
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60 E-value=1e-14 Score=130.56 Aligned_cols=147 Identities=18% Similarity=0.186 Sum_probs=91.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEE-eeeeeEEeeC--C
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFETE--T 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti-~~~~~~~~~~--~ 159 (475)
.+|+++|.+++|||||+.+++. +..... .+ .|+ ......+..+ .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~----------------------~~---------~t~~~~~~~~~~~~~~~ 48 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS--GTFIEK----------------------YD---------PTIEDFYRKEIEVDSSP 48 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCC----------------------CC---------CchhheEEEEEEECCEE
Confidence 4799999999999999988842 221110 00 000 0011122223 3
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..+.|+||||+..|...+...++.+|++|+|+|..+... | ....+.+..+.. .++| +++|.||+|+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~ 121 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQT---F---QDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESE 121 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccchhc
Confidence 457899999999998877777889999999999987532 1 122333333322 3677 8999999998321
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ... ..+...+.+.. .++++++||++|.|+.+++
T Consensus 122 ~--~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 122 R--EVS----SAEGRALAEEW------GCPFMETSAKSKTMVNELF 155 (163)
T ss_pred C--ccC----HHHHHHHHHHh------CCEEEEecCCCCCCHHHHH
Confidence 1 000 01112222222 2479999999999999863
No 205
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.60 E-value=1.1e-14 Score=132.36 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=93.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeee-eEEeeCC--
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFETET-- 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~-~~~~~~~-- 159 (475)
.+|+++|..++|||||+.++++ +..... .-.|+.... ..+...+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~--~~f~~~-------------------------------~~pt~~~~~~~~~~~~~~~ 48 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT--NKFPSE-------------------------------YVPTVFDNYAVTVMIGGEP 48 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCC-------------------------------CCCceeeeeEEEEEECCEE
Confidence 5799999999999999998843 211100 011111111 1223333
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHH-HHHHHHH--cCCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~-~l~~~~~--~~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+++|...+...++.+|++|||+|.+.... |+ ...+ ++..+.. .++| +|+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s---~~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~ 121 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDP 121 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECHhhhhCh
Confidence 678899999999997766667889999999999987542 11 2222 2223322 2567 99999999984321
Q ss_pred chHHHHHHH---------HhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
...+.+ .++...+.++.+ ...++++||++|.|+.+++
T Consensus 122 ---~~~~~l~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SA~tg~~v~~~f 167 (175)
T cd01874 122 ---STIEKLAKNKQKPITPETGEKLARDLK-----AVKYVECSALTQKGLKNVF 167 (175)
T ss_pred ---hhHHHhhhccCCCcCHHHHHHHHHHhC-----CcEEEEecCCCCCCHHHHH
Confidence 111111 111222222222 3589999999999999864
No 206
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=7e-15 Score=129.56 Aligned_cols=148 Identities=19% Similarity=0.195 Sum_probs=95.0
Q ss_pred EEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-CeeEEEE
Q 011910 87 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 165 (475)
Q Consensus 87 ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~~~li 165 (475)
++|++|+|||||+++|....... .....+.|.......+... ...+.++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999984321110 1112344544444444444 7789999
Q ss_pred eCCCCcCcHH-------HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 166 DAPGHKSYVP-------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 166 DtPGh~~f~~-------~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
||||+..+.. .+...++.+|++++|+|+..+.. ......+......+.| +++|+||+|+....
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~-------~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~-- 120 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD-------EEEEKLLELLRERGKP-VLLVLNKIDLLPEE-- 120 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCe-EEEEEEccccCChh--
Confidence 9999887743 33346789999999999998753 1222235566667888 89999999995432
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
........ ...... . ....+++++|++++.|+.++.
T Consensus 121 --~~~~~~~~-~~~~~~-~---~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 121 --EEEELLEL-RLLILL-L---LLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred --hHHHHHHH-HHhhcc-c---ccCCceEEEeeeccCCHHHHH
Confidence 11111110 001111 1 135689999999999998853
No 207
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.60 E-value=9.4e-15 Score=132.44 Aligned_cols=148 Identities=17% Similarity=0.211 Sum_probs=93.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee-eeEEeeC--C
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETE--T 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~-~~~~~~~--~ 159 (475)
.+|+++|..++|||||+.+++. +..... ...|+... ...+... .
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 49 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFIS--HSFPDY-------------------------------HDPTIEDAYKQQARIDNEP 49 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHh--CCCCCC-------------------------------cCCcccceEEEEEEECCEE
Confidence 5799999999999999998843 221100 00111100 0112223 3
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..+.|+||||...|...+...+..+|++|+|+|+.+... |+ ...+.+..+.. .++| +|+|.||+|+...
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S---f~---~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~ 122 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS---FQ---EASEFKKLITRVRLTEDIP-LVLVGNKVDLESQ 122 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhc
Confidence 568999999999998887788889999999999987643 11 22222222222 3577 8999999998321
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. . . ..++...+.+.. +++++++||++|.|+.+++.
T Consensus 123 ~--~--v--~~~~~~~~a~~~------~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 123 R--Q--V--TTEEGRNLAREF------NCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred C--c--c--CHHHHHHHHHHh------CCEEEEEecCCCCCHHHHHH
Confidence 0 0 0 111222333333 35899999999999999754
No 208
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.60 E-value=4.8e-14 Score=133.33 Aligned_cols=166 Identities=20% Similarity=0.233 Sum_probs=114.1
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcc-eEEeeeeeEEee
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG-KTVEVGRAHFET 157 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g-~ti~~~~~~~~~ 157 (475)
..+...|+++|++|+|||||++.|+....... .....| +++ +..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~-----------------------------~~~~~g~i~i------~~~ 80 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN-----------------------------ISDIKGPITV------VTG 80 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCc-----------------------------cccccccEEE------Eec
Confidence 34557899999999999999998854321100 001122 111 223
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.+.+++++||||+. ..++..+..+|++++|+|+..+.. .++.+.+..+...++|.+|+|+||+|+...
T Consensus 81 ~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~-------~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~-- 148 (225)
T cd01882 81 KKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFE-------METFEFLNILQVHGFPRVMGVLTHLDLFKK-- 148 (225)
T ss_pred CCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCC-------HHHHHHHHHHHHcCCCeEEEEEeccccCCc--
Confidence 67889999999964 666777889999999999998753 467788888888899966679999999432
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCC
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 304 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~ 304 (475)
...++.+.+.++..+...-+ ...+++++||++.-. .||.++..++..++.+...
T Consensus 149 -~~~~~~~~~~l~~~~~~~~~---~~~ki~~iSa~~~~~---------~~~~e~~~~~r~i~~~~~~ 202 (225)
T cd01882 149 -NKTLRKTKKRLKHRFWTEVY---QGAKLFYLSGIVHGR---------YPKTEIHNLARFISVMKFR 202 (225)
T ss_pred -HHHHHHHHHHHHHHHHHhhC---CCCcEEEEeeccCCC---------CCHHHHHHHHHHHHhCCCC
Confidence 23455666666664332112 245999999987632 4566667777777776653
No 209
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.59 E-value=8.5e-15 Score=115.96 Aligned_cols=81 Identities=40% Similarity=0.636 Sum_probs=76.7
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeE
Q 011910 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (475)
Q Consensus 312 ~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (475)
|+|+|.++| ++.|++++|+|.+|++++||++.++|++...+|++|+.++.++++|.|||.|+++|++++..++++||+
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 689999999 578899999999999999999999999999999999999999999999999999999988889999999
Q ss_pred Eec
Q 011910 390 LSS 392 (475)
Q Consensus 390 l~~ 392 (475)
|+.
T Consensus 81 l~~ 83 (83)
T cd03696 81 LSS 83 (83)
T ss_pred EcC
Confidence 974
No 210
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=7.9e-15 Score=134.54 Aligned_cols=153 Identities=15% Similarity=0.126 Sum_probs=93.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeee-eEEee---C
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFET---E 158 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~-~~~~~---~ 158 (475)
++|+++|..++|||||+++|+... ... . ...|+.... ..+.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~--~~~-----------------------------~--~~~t~~~~~~~~i~~~~~~ 47 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK--FPE-----------------------------E--YVPTVFENYVTNIQGPNGK 47 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc--CCC-----------------------------C--CCCeeeeeeEEEEEecCCc
Confidence 479999999999999999984321 100 0 001111110 11222 2
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHH-HHHHHHH--cCCceEEEEEEccCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~-~l~~~~~--~~i~~iivviNKiD~~~~ 235 (475)
...+.|+||||+.+|.......+..+|++|+|+|++.... |+ .... .+..... .++| +|+|.||+|+...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 120 (187)
T cd04132 48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS---LD---NVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKD 120 (187)
T ss_pred EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhhhC
Confidence 3568999999999998877777889999999999987532 11 1111 2222221 3577 8999999998432
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .+ .....+...+....++ .+++++||++|.|+.+++.
T Consensus 121 ~~~-~~-~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 160 (187)
T cd04132 121 KNL-DR-KVTPAQAESVAKKQGA-----FAYLECSAKTMENVEEVFD 160 (187)
T ss_pred ccc-cC-CcCHHHHHHHHHHcCC-----cEEEEccCCCCCCHHHHHH
Confidence 100 00 0012233334444332 2789999999999999754
No 211
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.1e-14 Score=128.67 Aligned_cols=159 Identities=18% Similarity=0.279 Sum_probs=109.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeee----EEe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA----HFE 156 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~----~~~ 156 (475)
....|+++|..++|||||+-+++ .+.+.+. .-.||..++. ...
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfv--k~~F~e~-------------------------------~e~TIGaaF~tktv~~~ 50 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFV--KDQFHEN-------------------------------IEPTIGAAFLTKTVTVD 50 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhh--hCccccc-------------------------------cccccccEEEEEEEEeC
Confidence 45689999999999999997762 3322210 1123333332 222
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEE--EEEccCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL--VVNKMDDHT 234 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iiv--viNKiD~~~ 234 (475)
-...+|.||||+|+++|-...--..+.|++||+|.|.++-.. | .+.+..+..+....-|.+++ |-||+|+..
T Consensus 51 ~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~S---F---~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 51 DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEES---F---EKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHH---H---HHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 334778899999999998777777899999999999987543 3 36777777887766566665 669999932
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCC
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEI 303 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~ 303 (475)
-.+-.+ ++...+..+.| ..++.+||++|.|+.++ +..+...+|.
T Consensus 125 --~R~V~~----~ea~~yAe~~g------ll~~ETSAKTg~Nv~~i-------------f~~Ia~~lp~ 168 (200)
T KOG0092|consen 125 --RREVEF----EEAQAYAESQG------LLFFETSAKTGENVNEI-------------FQAIAEKLPC 168 (200)
T ss_pred --cccccH----HHHHHHHHhcC------CEEEEEecccccCHHHH-------------HHHHHHhccC
Confidence 112222 33444555543 58999999999999986 5556666655
No 212
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=8.7e-15 Score=132.26 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=93.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccc-hHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVD-DRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~-~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.+..+|+++|..|+|||||+.+++.. .+. .. . ....+.........+...
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~--~f~~~~------------------------~---~~T~~~~~~~~~~~~~~~ 52 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGR--SFSLNA------------------------Y---SPTIKPRYAVNTVEVYGQ 52 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCC--CCCccc------------------------C---CCccCcceEEEEEEECCe
Confidence 35678999999999999999998421 111 00 0 000111111111222222
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cCCceEEEEEEccCCCCCCc
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~i~~iivviNKiD~~~~~~ 237 (475)
...+.++|++|...|.......+..+|++|+|+|+..... |+ ...+.+..+.. .++| +++|+||+|+....
T Consensus 53 ~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 124 (169)
T cd01892 53 EKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKS---FS---YCAEVYKKYFMLGEIP-CLFVAAKADLDEQQ- 124 (169)
T ss_pred EEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHhccCCCCe-EEEEEEcccccccc-
Confidence 3568899999999887666666789999999999976521 11 12222222211 2577 99999999983221
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ....+...+.+.+++. .++++||++|.|+.+++.
T Consensus 125 -~----~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 125 -Q----RYEVQPDEFCRKLGLP-----PPLHFSSKLGDSSNELFT 159 (169)
T ss_pred -c----ccccCHHHHHHHcCCC-----CCEEEEeccCccHHHHHH
Confidence 0 0111223333444432 468999999999998643
No 213
>PRK11058 GTPase HflX; Provisional
Probab=99.59 E-value=6.3e-15 Score=151.26 Aligned_cols=150 Identities=17% Similarity=0.103 Sum_probs=92.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-e
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 160 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~ 160 (475)
.+.|+++|.+|+|||||+++|...... .....+.|.+.....+.+.+ .
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-------------------------------v~~~~~tTld~~~~~i~l~~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-------------------------------AADQLFATLDPTLRRIDVADVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-------------------------------eccCCCCCcCCceEEEEeCCCC
Confidence 467999999999999999999432110 00113455555555555555 3
Q ss_pred eEEEEeCCCCcCc--------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 161 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 161 ~~~liDtPGh~~f--------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.|+||||+.+. +..+...+..||++|+|+|++++.+..... .+.+.+..+...+.| +++|+||+|+
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~---~v~~iL~el~~~~~p-vIiV~NKiDL 321 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIE---AVNTVLEEIDAHEIP-TLLVMNKIDM 321 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHH---HHHHHHHHhccCCCC-EEEEEEcccC
Confidence 8899999998442 222345567899999999998864321100 112333333334677 8999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... ....+ . . ...++ ..++++||++|.|++++.+
T Consensus 322 ~~~--~~~~~----~---~--~~~~~-----~~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 322 LDD--FEPRI----D---R--DEENK-----PIRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred CCc--hhHHH----H---H--HhcCC-----CceEEEeCCCCCCHHHHHH
Confidence 421 11111 0 0 01121 1258999999999998643
No 214
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.9e-14 Score=129.52 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=105.6
Q ss_pred cccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeE
Q 011910 75 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 154 (475)
Q Consensus 75 ~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~ 154 (475)
.++.+...+-||++|.+|+|||||+++|....+.. + .....|.|..+.++.
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------------------r------tSktPGrTq~iNff~ 67 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLA-----------------------R------TSKTPGRTQLINFFE 67 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCccee-----------------------e------cCCCCCccceeEEEE
Confidence 34445566789999999999999999995433211 0 112367888776655
Q ss_pred EeeCCeeEEEEeCCCCc-------------CcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCc
Q 011910 155 FETETTRFTILDAPGHK-------------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 221 (475)
Q Consensus 155 ~~~~~~~~~liDtPGh~-------------~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~ 221 (475)
+. +. +.|+|.||.- +.+...+..-..-.+++++||+.++.. ...++.+..+...++|
T Consensus 68 ~~--~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~-------~~D~em~~~l~~~~i~ 137 (200)
T COG0218 68 VD--DE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK-------DLDREMIEFLLELGIP 137 (200)
T ss_pred ec--Cc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC
Confidence 43 32 8899999951 122223333334678999999999964 4678999999999999
Q ss_pred eEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 222 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 222 ~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
++|++||+|....+ ........+.. .+++.+.....++..|+.++.|++++.
T Consensus 138 -~~vv~tK~DKi~~~----~~~k~l~~v~~---~l~~~~~~~~~~~~~ss~~k~Gi~~l~ 189 (200)
T COG0218 138 -VIVVLTKADKLKKS----ERNKQLNKVAE---ELKKPPPDDQWVVLFSSLKKKGIDELK 189 (200)
T ss_pred -eEEEEEccccCChh----HHHHHHHHHHH---HhcCCCCccceEEEEecccccCHHHHH
Confidence 89999999995422 22222222322 222222222238888999999988853
No 215
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=2.4e-14 Score=135.00 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=96.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|..|+|||||+.+++. +..... .....|.++...........
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~--~~f~~~---------------------------~~~tig~~~~~~~~~~~~~~ 61 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh--CCCCCc---------------------------cCCccceeEEEEEEEECCeE
Confidence 4557899999999999999998742 211100 00112222222222222234
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH--HcCCceEEEEEEccCCCCCCc
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~--~~~i~~iivviNKiD~~~~~~ 237 (475)
..+.||||||+.+|...+....+.+|++|+|+|.+.... |. .....+..+. ..++| +++|.||+|+.....
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v 134 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEEchhhhhccC
Confidence 689999999999998776667889999999999987643 11 2222222222 23677 899999999842211
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. +++ .+.+. ..++++++||++|.|+.+++.
T Consensus 135 ~~-------~~~-~~~~~------~~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 135 KA-------KQV-TFHRK------KNLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred CH-------HHH-HHHHh------cCCEEEEcCCCCCCCHHHHHH
Confidence 11 111 12222 245799999999999999754
No 216
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.59 E-value=8.7e-15 Score=133.37 Aligned_cols=149 Identities=16% Similarity=0.066 Sum_probs=91.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee--CCe
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 160 (475)
++|+++|++|+|||||+++|+.... ... ... .+.......+.. .++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~---------------------~~~---------t~~~~~~~~~~~~~~~~ 49 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VES---------------------YYP---------TIENTFSKIIRYKGQDY 49 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccc---------------------cCc---------chhhhEEEEEEECCEEE
Confidence 5899999999999999999853211 000 000 000000111222 235
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHH-HH---cCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~-~~---~~i~~iivviNKiD~~~~~ 236 (475)
.+.++||||+.+|.......+..+|++++|+|+...... ...+..+..+ .. .+.| +|+|+||+|+....
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~ 122 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSF------EVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQR 122 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcC
Confidence 689999999999987777788899999999999875321 1122222222 21 3567 89999999984211
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... .++..+...+ ..+++++||++|.|+.+++.
T Consensus 123 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 123 --QVST----EEGKELAESW------GAAFLESSARENENVEEAFE 156 (180)
T ss_pred --ccCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 0001 1122222322 24799999999999999754
No 217
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.59 E-value=7.1e-15 Score=147.22 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=106.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
..-.+++|+|.||+|||||+|+|+.....+. +| ..|.|.++-...+..++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIV------------------------Td------I~GTTRDviee~i~i~G 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIV------------------------TD------IAGTTRDVIEEDINLNG 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEe------------------------cC------CCCCccceEEEEEEECC
Confidence 3446899999999999999999976554432 23 37899999999999999
Q ss_pred eeEEEEeCCCCcCc--------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 160 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 160 ~~~~liDtPGh~~f--------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
+.+.++||+|.++= +......+..||.+++|+|++.+.. .+....+. +...+.| +++|+||+|
T Consensus 265 ~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~-------~~d~~~~~-~~~~~~~-~i~v~NK~D 335 (454)
T COG0486 265 IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLD-------KEDLALIE-LLPKKKP-IIVVLNKAD 335 (454)
T ss_pred EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------hhhHHHHH-hcccCCC-EEEEEechh
Confidence 99999999997643 3333445779999999999998743 24444444 3345566 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+..... . ..+ +. ....+++++|+++|+|++.|.+
T Consensus 336 L~~~~~-~-------~~~-----~~----~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 336 LVSKIE-L-------ESE-----KL----ANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred cccccc-c-------chh-----hc----cCCCceEEEEecCccCHHHHHH
Confidence 954321 0 000 00 1134799999999999998644
No 218
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.58 E-value=2.5e-14 Score=136.97 Aligned_cols=148 Identities=16% Similarity=0.267 Sum_probs=91.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEE-eeeeeEEeeC--Ce
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFETE--TT 160 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti-~~~~~~~~~~--~~ 160 (475)
+|+++|..++|||||+++++. +..... .-.|+ +.....+... .+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~--~~f~~~-------------------------------y~pTi~d~~~k~~~i~~~~~ 48 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLG--GRFEEQ-------------------------------YTPTIEDFHRKLYSIRGEVY 48 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHc--CCCCCC-------------------------------CCCChhHhEEEEEEECCEEE
Confidence 689999999999999999853 211100 00011 1111122233 36
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH------------cCCceEEEEEE
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------------LGVTKLLLVVN 228 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~------------~~i~~iivviN 228 (475)
.+.||||+|+.+|.......+..+|++|||+|++.... |+ .....+..+.. .++| +|+|.|
T Consensus 49 ~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~S---f~---~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgN 121 (247)
T cd04143 49 QLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRES---FE---EVCRLREQILETKSCLKNKTKENVKIP-MVICGN 121 (247)
T ss_pred EEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhcccccccccCCCCc-EEEEEE
Confidence 78999999999997766666789999999999987532 21 12222222211 2567 899999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+... .+... +++..++... ..+.++++||++|.|+++++.
T Consensus 122 K~Dl~~~--~~v~~----~ei~~~~~~~-----~~~~~~evSAktg~gI~elf~ 164 (247)
T cd04143 122 KADRDFP--REVQR----DEVEQLVGGD-----ENCAYFEVSAKKNSNLDEMFR 164 (247)
T ss_pred Cccchhc--cccCH----HHHHHHHHhc-----CCCEEEEEeCCCCCCHHHHHH
Confidence 9999421 11111 2233333211 135799999999999999643
No 219
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.58 E-value=8.2e-15 Score=132.57 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=89.3
Q ss_pred EEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-CeeEEEE
Q 011910 87 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 165 (475)
Q Consensus 87 ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~~~li 165 (475)
++|++|+|||||+++|..... ......+.|+......+... +..+.|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-------------------------------KVANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-------------------------------cccCCCceeecCcceEEEcCCCCeEEEE
Confidence 589999999999999943210 00111345555555556666 8899999
Q ss_pred eCCCCcC-------cHHHHhhccccCCEEEEEEecCCCcc---ccccCCCcchHHHHHHHH----------HcCCceEEE
Q 011910 166 DAPGHKS-------YVPNMISGASQADIGVLVISARKGEF---ETGFEKGGQTREHVMLAK----------TLGVTKLLL 225 (475)
Q Consensus 166 DtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~g~~---e~~~~~~~~t~~~l~~~~----------~~~i~~iiv 225 (475)
||||+.+ +...+...+..+|++++|+|+..... ...+ .....+...+. ..+.| +++
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~iv 125 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPL---EDYEILNAELKLYDLETILGLLTAKP-VIY 125 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHH---HHHHHHHHHHHHhhhhhHHHHHhhCC-eEE
Confidence 9999743 22344556778999999999987520 0000 11112222221 13677 899
Q ss_pred EEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 226 viNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
|+||+|+.... ...... ...... ....+++++||++|.|+.++.
T Consensus 126 v~NK~Dl~~~~----~~~~~~--~~~~~~------~~~~~~~~~Sa~~~~gl~~l~ 169 (176)
T cd01881 126 VLNKIDLDDAE----ELEEEL--VRELAL------EEGAEVVPISAKTEEGLDELI 169 (176)
T ss_pred EEEchhcCchh----HHHHHH--HHHHhc------CCCCCEEEEehhhhcCHHHHH
Confidence 99999994321 111111 111111 124579999999999998863
No 220
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.58 E-value=1.1e-14 Score=130.82 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=87.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|+.++|||||+.+++. +..... +..+. + +.......+......+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~--~~~~~~---------------------~~~t~------~-~~~~~~~~~~~~~~~~~ 50 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT--KRFIGE---------------------YDPNL------E-SLYSRQVTIDGEQVSLE 50 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh--Cccccc---------------------cCCCh------H-HhceEEEEECCEEEEEE
Confidence 489999999999999998853 111000 00000 0 00111112222334688
Q ss_pred EEeCCCCcCc-HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-----cCCceEEEEEEccCCCCCCc
Q 011910 164 ILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 164 liDtPGh~~f-~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-----~~i~~iivviNKiD~~~~~~ 237 (475)
|+||||+..+ .......++.+|++|+|+|+..... |+ .....+..+.. .++| +|+|.||+|+....
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~- 122 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS---FD---EISQLKQLIREIKKRDREIP-VILVGNKADLLHYR- 122 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhC-
Confidence 9999999863 4445567789999999999987632 11 22222222222 2677 89999999983210
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccc-cccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~-gi~~l~ 281 (475)
.. ..++...+.+.. ..+++++||++|. |+.+++
T Consensus 123 ---~v--~~~~~~~~~~~~------~~~~~e~Sa~~~~~~v~~~f 156 (165)
T cd04146 123 ---QV--STEEGEKLASEL------GCLFFEVSAAEDYDGVHSVF 156 (165)
T ss_pred ---cc--CHHHHHHHHHHc------CCEEEEeCCCCCchhHHHHH
Confidence 00 011222233333 2479999999995 899864
No 221
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=1.6e-14 Score=132.85 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=93.9
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|..++|||||+++|+.. ..... .....|.+.......+......+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~--~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTED--EFSES---------------------------TKSTIGVDFKIKTVYIENKIIKL 51 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCCCC---------------------------CCCceeeEEEEEEEEECCEEEEE
Confidence 36999999999999999998421 11000 00111222222222222234568
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCCchH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~~~~ 239 (475)
.++||||+.+|...+...+..+|++|+|+|+..... |. .....+..+... ..| +|+|.||+|+......
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v- 123 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQES---FE---NLKFWINEINRYARENVI-KVIVANKSDLVNNKVV- 123 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccC-
Confidence 899999999998888888899999999999987532 11 222233333322 355 8999999998421100
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. .....+.... .++++.+||++|.|+.+++.
T Consensus 124 -~~----~~~~~~~~~~------~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 124 -DS----NIAKSFCDSL------NIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred -CH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 00 1111222222 34799999999999998754
No 222
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.58 E-value=1.1e-14 Score=129.44 Aligned_cols=147 Identities=20% Similarity=0.145 Sum_probs=93.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--Cee
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 161 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~ 161 (475)
+|+++|++++|||||+++|+... .... . ...+.+.....+... ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~------------------------~------~~~~~~~~~~~~~~~~~~~~ 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEE------------------------Y------DPTIEDSYRKTIVVDGETYT 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcC------------------------c------CCChhHeEEEEEEECCEEEE
Confidence 58999999999999999995322 1100 0 000001111222333 467
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCc
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~ 237 (475)
+.++|+||+..|.......+..+|++++|+|....... ......+..+.. .+.| +++|+||+|+....
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~- 120 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESF------EEIKGYREQILRVKDDEDIP-IVLVGNKCDLENER- 120 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccc-
Confidence 89999999999888877888899999999998775321 122222222222 2566 89999999984311
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. ..+.+..+++..+ .+++++|+++|.|+.+++
T Consensus 121 -~~----~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 121 -QV----SKEEGKALAKEWG------CPFIETSAKDNINIDEVF 153 (160)
T ss_pred -ee----cHHHHHHHHHHcC------CcEEEeccCCCCCHHHHH
Confidence 11 1223333444332 479999999999999863
No 223
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.58 E-value=1.7e-14 Score=148.84 Aligned_cols=145 Identities=21% Similarity=0.261 Sum_probs=98.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++|+|||||+++|+.....+. ....|.|.+.....+.+++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv------------------------------s~~pgtTrd~~~~~i~~~g 250 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIV------------------------------SDIKGTTRDVVEGDFELNG 250 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCccc------------------------------CCCCCcEEEEEEEEEEECC
Confidence 3457899999999999999999954322111 1125677777777788889
Q ss_pred eeEEEEeCCCCcCcHHH--------HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 160 TRFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~--------~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
..++++||||+.++... ....+..+|++|+|+|++.+.. .... .+..+...+.| +|+|+||+|
T Consensus 251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s-------~~~~-~l~~~~~~~~p-iIlV~NK~D 321 (442)
T TIGR00450 251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT-------KDDF-LIIDLNKSKKP-FILVLNKID 321 (442)
T ss_pred EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------hhHH-HHHHHhhCCCC-EEEEEECcc
Confidence 99999999998765322 2345678999999999987642 1222 34444445777 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+...+ . ..+.+.+ ..+++++||++ .|+.++++
T Consensus 322 l~~~~-----~-------~~~~~~~------~~~~~~vSak~-~gI~~~~~ 353 (442)
T TIGR00450 322 LKINS-----L-------EFFVSSK------VLNSSNLSAKQ-LKIKALVD 353 (442)
T ss_pred CCCcc-----h-------hhhhhhc------CCceEEEEEec-CCHHHHHH
Confidence 94221 1 1111222 24689999998 47776543
No 224
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=9.7e-15 Score=136.84 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=94.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee---CC
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---ET 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---~~ 159 (475)
.+|+++|..++|||||+++|+... ... .....+..+.....+.. ..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~-----------------------------~~~~ti~~d~~~~~i~~~~~~~ 51 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAE-----------------------------VSDPTVGVDFFSRLIEIEPGVR 51 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC-----------------------------CCCceeceEEEEEEEEECCCCE
Confidence 689999999999999999985321 100 00011112222222322 23
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc----CCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~----~i~~iivviNKiD~~~~ 235 (475)
..+.|+||||+..|.......++.+|++|+|+|++.... |+ ...+.+..+... ..| +++|.||+|+...
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S---f~---~l~~~~~~i~~~~~~~~~~-iilvgNK~Dl~~~ 124 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES---FE---HVHDWLEEARSHIQPHRPV-FILVGHKCDLESQ 124 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCe-EEEEEEccccccc
Confidence 578999999999998877778899999999999987532 11 222333333221 334 7889999998421
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. . ...++...+.+.. .++++++||++|.|+.++++
T Consensus 125 ~--~----v~~~~~~~~~~~~------~~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 125 R--Q----VTREEAEKLAKDL------GMKYIETSARTGDNVEEAFE 159 (211)
T ss_pred c--c----cCHHHHHHHHHHh------CCEEEEEeCCCCCCHHHHHH
Confidence 1 0 1112223333333 25799999999999999754
No 225
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.57 E-value=8.9e-15 Score=132.55 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=93.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|..++|||||+.+++.. .... ... ..+.........+......+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~--~~~~------------------------~~~----~t~~~~~~~~~~~~~~~~~~ 50 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTN--GYPT------------------------EYV----PTAFDNFSVVVLVDGKPVRL 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CCCC------------------------CCC----CceeeeeeEEEEECCEEEEE
Confidence 36899999999999999887431 1110 000 01111111112222223578
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCCCchHH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~~~~~~ 240 (475)
.||||||+..|.......++.+|++|+|+|+..... |+ ......+..+.. .++| +++|.||+|+....-...
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s---f~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~ 124 (173)
T cd04130 51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS---FQ--NISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVLI 124 (173)
T ss_pred EEEECCCChhhccccccccCCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHHH
Confidence 899999999998777777889999999999987532 11 111223333333 3577 899999999842110000
Q ss_pred ------HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 241 ------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 241 ------~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
...-..++...+.+..+. .+++++||++|.|+.++++
T Consensus 125 ~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~lf~ 167 (173)
T cd04130 125 QLARYGEKPVSQSRAKALAEKIGA-----CEYIECSALTQKNLKEVFD 167 (173)
T ss_pred HHhhcCCCCcCHHHHHHHHHHhCC-----CeEEEEeCCCCCCHHHHHH
Confidence 000011122333333332 3799999999999998643
No 226
>PLN03108 Rab family protein; Provisional
Probab=99.57 E-value=3e-14 Score=133.48 Aligned_cols=153 Identities=19% Similarity=0.154 Sum_probs=95.2
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|+.++|||||+++|+...-... . ...-+.+.......+......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~--------------------------~---~~ti~~~~~~~~i~~~~~~i~ 56 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------------H---DLTIGVEFGARMITIDNKPIK 56 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC--------------------------C---CCCccceEEEEEEEECCEEEE
Confidence 47899999999999999999843211000 0 000122222222222222356
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCCch
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~~~ 238 (475)
+.++||||+..|...+...++.+|++|+|+|+..... | ......+..+.. .++| +++|.||+|+....
T Consensus 57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s---~---~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-- 127 (210)
T PLN03108 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLASWLEDARQHANANMT-IMLIGNKCDLAHRR-- 127 (210)
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc--
Confidence 8899999999998888788889999999999987532 1 122222222222 2566 89999999984211
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ...++...+++.. .++++++||++|.|+.+++.
T Consensus 128 ~----~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 128 A----VSTEEGEQFAKEH------GLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred C----CCHHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 0 0112223334433 35799999999999998643
No 227
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.57 E-value=2.4e-14 Score=128.18 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=92.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--ee
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 161 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 161 (475)
+|+++|..++|||||+.+++. +.+.. +....+..+.....+...+ ..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD--NEFHS-----------------------------SHISTIGVDFKMKTIEVDGIKVR 50 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc--CCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEE
Confidence 689999999999999998842 21110 0011122222223334443 56
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCCch
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~~~ 238 (475)
+.|+||||...|...+....+.+|++++|+|...... |+ .....+..+... ++| +++|.||+|+.....
T Consensus 51 l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---f~---~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~- 122 (161)
T cd04117 51 IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERS---YQ---HIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQ- 122 (161)
T ss_pred EEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECcccccccC-
Confidence 8899999999998877777889999999999886532 21 222223322222 466 899999999842210
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ..++...+.+.. ..+++++||++|.|+.+++
T Consensus 123 ---v--~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 123 ---V--GDEQGNKLAKEY------GMDFFETSACTNSNIKESF 154 (161)
T ss_pred ---C--CHHHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 0 011222222322 3579999999999999863
No 228
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=3.7e-14 Score=130.55 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=92.0
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee---eeEEeeCC
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG---RAHFETET 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~---~~~~~~~~ 159 (475)
++|+++|..++|||||+.+|+. +.... + ...|+... ........
T Consensus 1 ~kivivG~~~vGKTsli~~~~~--~~~~~-----------------------------~--~~~t~~~~~~~~i~~~~~~ 47 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQ-----------------------------V--YEPTVFENYVHDIFVDGLH 47 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------c--cCCcceeeeEEEEEECCEE
Confidence 3689999999999999999842 11110 0 00111111 11122223
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHH--cCCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~--~~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+..|........+.+|++|||.|...... |+ ... ..+..+.. .+.| +|+|.||+|+....
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~s---f~---~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~ 120 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDS---LE---NVESKWLGEIREHCPGVK-LVLVALKCDLREAR 120 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccCh
Confidence 678999999999986665566788999999999887532 11 111 22333332 2677 99999999994321
Q ss_pred chHHHHHH------HHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~------i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
-....... ..++...+++..+ .++++++||++|.|+.+++.
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~v~e~f~ 167 (189)
T cd04134 121 NERDDLQRYGKHTISYEEGLAVAKRIN-----ALRYLECSAKLNRGVNEAFT 167 (189)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC-----CCEEEEccCCcCCCHHHHHH
Confidence 10000000 0111222333322 35899999999999999743
No 229
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.56 E-value=3.5e-14 Score=111.62 Aligned_cols=79 Identities=30% Similarity=0.482 Sum_probs=73.2
Q ss_pred ceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeE
Q 011910 312 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (475)
Q Consensus 312 ~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (475)
|||+|.++|+ +.|+.++|+|.+|.+++||+++++|.+..++|++|+.++.+++.|.||++|+|+|++ ..++++|++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~--~~~i~~G~v 78 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLED--EIDVSRGDV 78 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEECC--ccccCCCCE
Confidence 6899999996 357789999999999999999999999999999999999999999999999999984 577999999
Q ss_pred Eec
Q 011910 390 LSS 392 (475)
Q Consensus 390 l~~ 392 (475)
|+.
T Consensus 79 l~~ 81 (81)
T cd03695 79 IVA 81 (81)
T ss_pred EeC
Confidence 974
No 230
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.56 E-value=7.8e-14 Score=128.66 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=94.5
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeee---eEEeeC
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR---AHFETE 158 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~---~~~~~~ 158 (475)
..+|+++|..++|||||+.+++. +.+... ...|+.... ..+...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~ 49 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTT--NAFPKE-------------------------------YIPTVFDNYSAQTAVDGR 49 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHh--CCCCcC-------------------------------CCCceEeeeEEEEEECCE
Confidence 36899999999999999998843 211100 111221111 112223
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHH-HHHHHHH--cCCceEEEEEEccCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~-~l~~~~~--~~i~~iivviNKiD~~~~ 235 (475)
...+.|+||||++.|....-...+.+|++|+|.|.+.... |+ .... .+..+.. .++| +++|.||.|+...
T Consensus 50 ~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 122 (191)
T cd01875 50 TVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSS---YE---NVRHKWHPEVCHHCPNVP-ILLVGTKKDLRND 122 (191)
T ss_pred EEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEeChhhhcC
Confidence 3668999999999998877777889999999999987532 21 1211 1221221 3677 8999999999422
Q ss_pred CchHHHHHH------HHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~------i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.-..+.+.+ ..++...+.++.+ .++++.+||++|.|+.+++.
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SAk~g~~v~e~f~ 170 (191)
T cd01875 123 ADTLKKLKEQGQAPITPQQGGALAKQIH-----AVKYLECSALNQDGVKEVFA 170 (191)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCCHHHHHH
Confidence 100001111 0112222333332 24899999999999999744
No 231
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.56 E-value=3.3e-14 Score=148.22 Aligned_cols=145 Identities=20% Similarity=0.264 Sum_probs=104.0
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
..||++|++|+|||||+|+|-+ ......+| .|+|++.....+...++.+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG---------------------~~q~VgNw----------pGvTVEkkeg~~~~~~~~i 52 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTG---------------------ANQKVGNW----------PGVTVEKKEGKLKYKGHEI 52 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhc---------------------cCceecCC----------CCeeEEEEEEEEEecCceE
Confidence 4599999999999999999922 22222233 8999999999999999999
Q ss_pred EEEeCCCCcCcH----HHHhhc---c-ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 163 TILDAPGHKSYV----PNMISG---A-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 163 ~liDtPGh~~f~----~~~~~~---~-~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
.++|+||-.++. ++.++- + ..+|++|.||||..- ........++..+|+| +|+++|++|...
T Consensus 53 ~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL---------eRnLyltlQLlE~g~p-~ilaLNm~D~A~ 122 (653)
T COG0370 53 EIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL---------ERNLYLTLQLLELGIP-MILALNMIDEAK 122 (653)
T ss_pred EEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH---------HHHHHHHHHHHHcCCC-eEEEeccHhhHH
Confidence 999999976552 222221 2 368999999999853 1333444566778999 999999999721
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
-+.+.-...++-+.+ .+|++|+||++|.|++++.
T Consensus 123 -------~~Gi~ID~~~L~~~L------GvPVv~tvA~~g~G~~~l~ 156 (653)
T COG0370 123 -------KRGIRIDIEKLSKLL------GVPVVPTVAKRGEGLEELK 156 (653)
T ss_pred -------hcCCcccHHHHHHHh------CCCEEEEEeecCCCHHHHH
Confidence 112222233333334 4689999999999998863
No 232
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.56 E-value=2.3e-14 Score=153.15 Aligned_cols=140 Identities=20% Similarity=0.205 Sum_probs=97.0
Q ss_pred ecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEEEEeCC
Q 011910 89 GHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAP 168 (475)
Q Consensus 89 G~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~liDtP 168 (475)
|++|+|||||+++|..... ......|+|++.....+.+++..++++|||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-------------------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-------------------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-------------------------------eecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 8999999999999942210 011236889888877888888999999999
Q ss_pred CCcCcHHH-----Hhh---ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHH
Q 011910 169 GHKSYVPN-----MIS---GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 169 Gh~~f~~~-----~~~---~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~ 240 (475)
|+.+|... +.+ ....+|++++|+|++.. ....+....+...++| +++|+||+|+....
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------er~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~---- 115 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------ERNLYLTLQLLELGIP-MILALNLVDEAEKK---- 115 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------hhhHHHHHHHHhcCCC-EEEEEehhHHHHhC----
Confidence 99887432 111 23478999999999863 1334444555667888 89999999983211
Q ss_pred HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 241 ~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .+.+.+.+.+ +++++++||++|.|++++.+
T Consensus 116 ~i~---~d~~~L~~~l------g~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 116 GIR---IDEEKLEERL------GVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred CCh---hhHHHHHHHc------CCCEEEEECCCCCCHHHHHH
Confidence 111 1122222333 35899999999999999754
No 233
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.55 E-value=4.1e-14 Score=128.16 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=91.5
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|+.++|||||+.+|+.... ... +. ...+... .....+......+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~~~---------------------~~------~t~~~~~-~~~~~~~~~~~~l 51 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEV---------------------YV------PTVFENY-VADIEVDGKQVEL 51 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCC---------------------CC------Cccccce-EEEEEECCEEEEE
Confidence 4799999999999999998843211 000 00 0000000 1111222233568
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHH-HHHHHHH--cCCceEEEEEEccCCCCCCchH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~-~l~~~~~--~~i~~iivviNKiD~~~~~~~~ 239 (475)
.|+||||+..|.......+..+|++++|.|+..... |+ ...+ .+..+.. .++| +++|.||+|+.......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 124 (175)
T cd01870 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTR 124 (175)
T ss_pred EEEeCCCchhhhhccccccCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhh
Confidence 999999999987766667789999999999875421 11 1111 1222222 3677 99999999984322111
Q ss_pred HHHHH------HHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 240 ERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 240 ~~~~~------i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
..... ...+...+.+..+ ..+++++||++|.|+.+++.
T Consensus 125 ~~i~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~lf~ 168 (175)
T cd01870 125 RELAKMKQEPVKPEEGRDMANKIG-----AFGYMECSAKTKEGVREVFE 168 (175)
T ss_pred hhhhhccCCCccHHHHHHHHHHcC-----CcEEEEeccccCcCHHHHHH
Confidence 11000 0111222233322 34799999999999998643
No 234
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.54 E-value=4.1e-14 Score=128.63 Aligned_cols=155 Identities=18% Similarity=0.131 Sum_probs=95.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee---eeEEeeCC
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG---RAHFETET 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~---~~~~~~~~ 159 (475)
.+|+++|+.++|||+|+.+++. +..... ...|+... ...+....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~~-------------------------------~~~Ti~~~~~~~~~~~~~~ 48 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPTD-------------------------------YIPTVFDNFSANVSVDGNT 48 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCCC-------------------------------CCCcceeeeEEEEEECCEE
Confidence 5799999999999999998842 221110 01111111 11122234
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcch-HHHHHHHHH--cCCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t-~~~l~~~~~--~~i~~iivviNKiD~~~~~ 236 (475)
.++.|+||+|++.|...+...++.+|++|||.|.+...+ |+ .. ...+..++. .++| +|+|.||+|+....
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~ 121 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRAS---YE---NVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDK 121 (176)
T ss_pred EEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhccCh
Confidence 678999999999998877778899999999999987542 21 22 223333332 3577 99999999983210
Q ss_pred chH-H---HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSK-E---RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~-~---~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... . ...-..++...+.+..+. .+++.+||++|.|+.+++.
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~nV~~~F~ 166 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 166 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCC-----CEEEECCCCcccCHHHHHH
Confidence 000 0 000112233334444332 2699999999999998743
No 235
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.54 E-value=9.6e-14 Score=128.74 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=72.3
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~ 235 (475)
....+.|+||||+.+|...+...++.+|++|+|+|+..... | ...+..+..+.. .++| +|+|.||+|+...
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S---~---~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~ 114 (200)
T smart00176 42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVT---Y---KNVPNWHRDLVRVCENIP-IVLCGNKVDVKDR 114 (200)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccccc
Confidence 35679999999999998888888899999999999988643 1 122233333333 3677 8999999998321
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... +.+ .+.+. ..++++.+||++|.|+.+++.
T Consensus 115 ~v~~-------~~~-~~~~~------~~~~~~e~SAk~~~~v~~~F~ 147 (200)
T smart00176 115 KVKA-------KSI-TFHRK------KNLQYYDISAKSNYNFEKPFL 147 (200)
T ss_pred cCCH-------HHH-HHHHH------cCCEEEEEeCCCCCCHHHHHH
Confidence 1111 111 12222 246899999999999999754
No 236
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.54 E-value=1.3e-13 Score=123.22 Aligned_cols=149 Identities=20% Similarity=0.243 Sum_probs=93.0
Q ss_pred EEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEEE
Q 011910 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 164 (475)
Q Consensus 85 v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 164 (475)
|+++|+.|+|||||++.|......-. .....+.|...... ... ..+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~--~~~-~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR-----------------------------TSKTPGKTQLINFF--NVN-DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee-----------------------------ecCCCCcceeEEEE--Ecc-CeEEE
Confidence 78999999999999999842111000 00112333332222 222 28999
Q ss_pred EeCCCCcCc----------HH---HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 165 LDAPGHKSY----------VP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 165 iDtPGh~~f----------~~---~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
+||||+... .. .........+++++|+|+..... ....+.+..+...+.| +++|+||+|
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~l~~~~~~-vi~v~nK~D 121 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT-------EIDLEMLDWLEELGIP-FLVVLTKAD 121 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC-------HhHHHHHHHHHHcCCC-EEEEEEchh
Confidence 999997553 11 12233345788999999987642 3445566777777888 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+... .........+...++... ...+++|+|++++.|+.++.
T Consensus 122 ~~~~----~~~~~~~~~~~~~l~~~~----~~~~~~~~Sa~~~~~~~~l~ 163 (170)
T cd01876 122 KLKK----SELAKALKEIKKELKLFE----IDPPIILFSSLKGQGIDELR 163 (170)
T ss_pred cCCh----HHHHHHHHHHHHHHHhcc----CCCceEEEecCCCCCHHHHH
Confidence 8432 223334444444444211 24589999999999998853
No 237
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.53 E-value=6.6e-14 Score=131.94 Aligned_cols=170 Identities=21% Similarity=0.241 Sum_probs=103.4
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+.++||++|.+|+|||||.|.|+...-.... +....|.......+..
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS------------------------------~K~~TTr~~ilgi~ts 117 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS------------------------------RKVHTTRHRILGIITS 117 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcccccc------------------------------ccccceeeeeeEEEec
Confidence 3467899999999999999999999654322111 1122344444455677
Q ss_pred CCeeEEEEeCCCC------c------CcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cCCceEE
Q 011910 158 ETTRFTILDAPGH------K------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLL 224 (475)
Q Consensus 158 ~~~~~~liDtPGh------~------~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~i~~ii 224 (475)
...++.|+||||. . .+..+...++..||++++|+|+...-. ...-+.+..+.. .++| =|
T Consensus 118 ~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~-------~l~p~vl~~l~~ys~ip-s~ 189 (379)
T KOG1423|consen 118 GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRT-------PLHPRVLHMLEEYSKIP-SI 189 (379)
T ss_pred CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcC-------ccChHHHHHHHHHhcCC-ce
Confidence 8899999999993 2 223344566789999999999985321 122233333333 4688 57
Q ss_pred EEEEccCCCCCCchHHHHHHHHhh------------hhhHhhhh----------cCcccCCeeEEEeecccccccccccc
Q 011910 225 LVVNKMDDHTVNWSKERYDEIESK------------MTPFLKAS----------GYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 225 vviNKiD~~~~~~~~~~~~~i~~~------------l~~~l~~~----------~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+|+||+|.... +..+-..+.. +++-+... |+. .--.+|++||++|+|+.++.+
T Consensus 190 lvmnkid~~k~---k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gws--hfe~vF~vSaL~G~Gikdlkq 264 (379)
T KOG1423|consen 190 LVMNKIDKLKQ---KRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWS--HFERVFMVSALYGEGIKDLKQ 264 (379)
T ss_pred eeccchhcchh---hhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcc--cceeEEEEecccccCHHHHHH
Confidence 89999997321 1111111111 11111100 010 012599999999999999743
Q ss_pred -----cCCCCCCC
Q 011910 283 -----KSLCPWWN 290 (475)
Q Consensus 283 -----~~~~~w~~ 290 (475)
+..-||+-
T Consensus 265 yLmsqa~~gpW~y 277 (379)
T KOG1423|consen 265 YLMSQAPPGPWKY 277 (379)
T ss_pred HHHhcCCCCCCCC
Confidence 34457863
No 238
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.51 E-value=1.9e-13 Score=124.99 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=96.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee---eeEEe
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG---RAHFE 156 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~---~~~~~ 156 (475)
+...+|+++|..++|||||+.+++. +..... ...|+... ...+.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~--~~f~~~-------------------------------~~pT~~~~~~~~~~~~ 49 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAK--DCFPEN-------------------------------YVPTVFENYTASFEID 49 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHh--CCCCCc-------------------------------cCCceeeeeEEEEEEC
Confidence 3456899999999999999999843 211100 01111111 11122
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcch-HHHHHHHHH--cCCceEEEEEEccCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDH 233 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t-~~~l~~~~~--~~i~~iivviNKiD~~ 233 (475)
.....+.||||+|.+.|.......++.+|++|||+|.+.... |+ .. ...+..++. -+.| +|+|.||+|+.
T Consensus 50 ~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL~ 122 (182)
T cd04172 50 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 122 (182)
T ss_pred CEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEeEChhhh
Confidence 234568999999999998777777889999999999887532 11 11 222223322 2566 89999999983
Q ss_pred CCC-chHH----H-HHHHHhhhhhHhhhhcCcccCCeeEEEeecccccc-cccccc
Q 011910 234 TVN-WSKE----R-YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 282 (475)
Q Consensus 234 ~~~-~~~~----~-~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~g-i~~l~~ 282 (475)
... ...+ + ..-..++...+.++.++ ++++.+||++|.| +.+++.
T Consensus 123 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~n~v~~~F~ 173 (182)
T cd04172 123 TDLTTLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDIFH 173 (182)
T ss_pred cChhhHHHHHhcCCCCCCHHHHHHHHHHcCC-----CEEEECCcCCCCCCHHHHHH
Confidence 210 0000 0 00112234445555432 3799999999998 998643
No 239
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.50 E-value=1.9e-13 Score=128.96 Aligned_cols=150 Identities=19% Similarity=0.215 Sum_probs=88.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|..|+|||||+.+|+. +.... .. .+...+.........+......+.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~--~~~~~------------------------~~--~~~t~~~~~~~~~i~~~~~~~~l~ 53 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTS--GEYDD------------------------HA--YDASGDDDTYERTVSVDGEESTLV 53 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhc--CCcCc------------------------cC--cCCCccccceEEEEEECCEEEEEE
Confidence 689999999999999999842 21110 00 000011011111222333457799
Q ss_pred EEeCCCCcCcHHHHhhccc-cCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCch
Q 011910 164 ILDAPGHKSYVPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~-~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~~ 238 (475)
|+||||+..+.... .+. .+|++++|+|+..... |. ...+.+..+.. .++| +|+|.||+|+....
T Consensus 54 i~Dt~G~~~~~~~~--~~~~~ad~iilV~d~td~~S---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~-- 122 (221)
T cd04148 54 VIDHWEQEMWTEDS--CMQYQGDAFVVVYSVTDRSS---FE---RASELRIQLRRNRQLEDRP-IILVGNKSDLARSR-- 122 (221)
T ss_pred EEeCCCcchHHHhH--HhhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhccccc--
Confidence 99999998443332 344 8999999999987532 11 23333333333 3577 99999999984321
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+-. .++...+.... .++++++||++|.|+.++++
T Consensus 123 ~v~----~~~~~~~a~~~------~~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 123 EVS----VQEGRACAVVF------DCKFIETSAGLQHNVDELLE 156 (221)
T ss_pred eec----HHHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 000 11112222222 34799999999999998754
No 240
>COG2262 HflX GTPases [General function prediction only]
Probab=99.49 E-value=5.5e-14 Score=138.43 Aligned_cols=152 Identities=17% Similarity=0.125 Sum_probs=102.3
Q ss_pred ccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEE
Q 011910 76 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 155 (475)
Q Consensus 76 ~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 155 (475)
.......+.|+++|.+|||||||+|+|....- ..+...-.|.+.....+
T Consensus 186 ~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~-------------------------------~~~d~LFATLdpttR~~ 234 (411)
T COG2262 186 KRSRSGIPLVALVGYTNAGKSTLFNALTGADV-------------------------------YVADQLFATLDPTTRRI 234 (411)
T ss_pred hhcccCCCeEEEEeeccccHHHHHHHHhccCe-------------------------------eccccccccccCceeEE
Confidence 33456778999999999999999999831111 01122445677777777
Q ss_pred eeC-CeeEEEEeCCCCcCcH--------HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceE
Q 011910 156 ETE-TTRFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKL 223 (475)
Q Consensus 156 ~~~-~~~~~liDtPGh~~f~--------~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~i 223 (475)
.+. ++.+.+-||-|+.+-+ +.++.....||..+.|||++++... .+.......+..+ ..| +
T Consensus 235 ~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~------~~~~~v~~vL~el~~~~~p-~ 307 (411)
T COG2262 235 ELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEIL------EKLEAVEDVLAEIGADEIP-I 307 (411)
T ss_pred EeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHH------HHHHHHHHHHHHcCCCCCC-E
Confidence 776 5899999999987653 3444456689999999999987532 3444444455554 456 8
Q ss_pred EEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 224 ivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+||+|+... .. ... .+... ....|++||++|.|++.|.+
T Consensus 308 i~v~NKiD~~~~--~~-----~~~----~~~~~------~~~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 308 ILVLNKIDLLED--EE-----ILA----ELERG------SPNPVFISAKTGEGLDLLRE 349 (411)
T ss_pred EEEEecccccCc--hh-----hhh----hhhhc------CCCeEEEEeccCcCHHHHHH
Confidence 999999998422 11 111 11111 11589999999999988644
No 241
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.49 E-value=3.4e-13 Score=125.57 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=81.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe--eCCe
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--TETT 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~--~~~~ 160 (475)
++|+++|+.++|||||+.+|..... .. + ...++.......+. ..+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~--~~-------------------------t-----~~s~~~~~~~~~~~~~~~~~ 48 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY--RS-------------------------T-----VTSIEPNVATFILNSEGKGK 48 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--CC-------------------------c-----cCcEeecceEEEeecCCCCc
Confidence 4789999999999999999843211 00 0 00011111111111 2467
Q ss_pred eEEEEeCCCCcCcHHHHhhccccC-CEEEEEEecCCCccccccCCCcchHHHHHHH----HH--cCCceEEEEEEccCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQA-DIGVLVISARKGEFETGFEKGGQTREHVMLA----KT--LGVTKLLLVVNKMDDH 233 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~-D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~----~~--~~i~~iivviNKiD~~ 233 (475)
.+.|+|||||.+|.......++.+ +++|+|||+..... .+ ..+.+.+..+ .. .++| +++|+||+|+.
T Consensus 49 ~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~--~~---~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~ 122 (203)
T cd04105 49 KFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK--NL---KDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLF 122 (203)
T ss_pred eEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh--HH---HHHHHHHHHHHHHHhhccCCCC-EEEEecchhhc
Confidence 899999999999988888888888 99999999987520 00 1233333221 11 3677 99999999996
Q ss_pred CCCchHHHHHHHHhhhhhH
Q 011910 234 TVNWSKERYDEIESKMTPF 252 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~ 252 (475)
.+...+...+.+.+++..+
T Consensus 123 ~a~~~~~i~~~le~ei~~~ 141 (203)
T cd04105 123 TAKPAKKIKEQLEKELNTL 141 (203)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 5543333334444444433
No 242
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.49 E-value=3.7e-13 Score=127.93 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=58.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|.+++|||||+++|....... ....+.|.......+.+.+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-------------------------------~~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV-------------------------------AAYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc-------------------------------cCCCCccccceEEEEEECCeEEE
Confidence 58999999999999999994221100 00123444444455667889999
Q ss_pred EEeCCCCcCc-------HHHHhhccccCCEEEEEEecCCC
Q 011910 164 ILDAPGHKSY-------VPNMISGASQADIGVLVISARKG 196 (475)
Q Consensus 164 liDtPGh~~f-------~~~~~~~~~~~D~~vlVVda~~g 196 (475)
++||||+.++ ...+...++.+|++++|+|+...
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 9999998543 34556678899999999998754
No 243
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.49 E-value=2.6e-13 Score=123.66 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=93.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee-eeEEee--CC
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFET--ET 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~-~~~~~~--~~ 159 (475)
.+|+++|..++|||||+.+++.. ..... .-.|+... ...+.. ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~--~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 48 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKD--CYPET-------------------------------YVPTVFENYTASFEIDEQR 48 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--cCCCC-------------------------------cCCceEEEEEEEEEECCEE
Confidence 46999999999999999998432 11100 00111111 011222 34
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcch-HHHHHHHHH--cCCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t-~~~l~~~~~--~~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||++.|.......++.+|++|+|.|.+.... |+ .. ..++..++. .++| +|+|.||+|+...
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~S---f~---~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~- 120 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPET---LD---SVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTD- 120 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHHCCCCC-EEEEEEChhhhcC-
Confidence 568999999999997766677889999999999987532 21 21 223333333 2566 8999999998321
Q ss_pred chH-HHH------HHHHhhhhhHhhhhcCcccCCeeEEEeecccccc-cccccc
Q 011910 237 WSK-ERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 282 (475)
Q Consensus 237 ~~~-~~~------~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~g-i~~l~~ 282 (475)
... ..+ .-..++...+.++.++ .+++.+||++|.| +.+++.
T Consensus 121 ~~~~~~~~~~~~~~v~~~e~~~~a~~~~~-----~~~~E~SA~~~~~~v~~~F~ 169 (178)
T cd04131 121 LSTLMELSHQRQAPVSYEQGCAIAKQLGA-----EIYLECSAFTSEKSVRDIFH 169 (178)
T ss_pred hhHHHHHHhcCCCCCCHHHHHHHHHHhCC-----CEEEECccCcCCcCHHHHHH
Confidence 000 000 0011233444444432 3799999999995 998643
No 244
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.4e-13 Score=119.72 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=103.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.....|.++|..|+|||.|+-++ ..+... +....-+-++....+++.++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf--~~~~f~-----------------------------e~~~sTIGVDf~~rt~e~~g 55 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRF--KDDTFT-----------------------------ESYISTIGVDFKIRTVELDG 55 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhh--ccCCcc-----------------------------hhhcceeeeEEEEEEeeecc
Confidence 34578999999999999999877 333222 22223344444555555554
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.||||+|+++|...+.+..+.|+++|+|.|.+.-.. |..-++...-+..-...++| .++|-||.|+...
T Consensus 56 k~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~S---F~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~-- 129 (205)
T KOG0084|consen 56 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQES---FNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEK-- 129 (205)
T ss_pred eEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHH---hhhHHHHHHHhhhhccCCCC-eEEEeeccccHhh--
Confidence 568999999999999999999999999999999987432 43222322223333334677 6789999998321
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCee-EEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQ-FLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~-iipiSa~~g~gi~~l~ 281 (475)
. .-..++.+.+..+++ .+ ++++||+.+.|+++.+
T Consensus 130 ~----~v~~~~a~~fa~~~~------~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 130 R----VVSTEEAQEFADELG------IPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred e----ecCHHHHHHHHHhcC------CcceeecccCCccCHHHHH
Confidence 1 111122234444443 35 9999999999999853
No 245
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=7.1e-13 Score=125.43 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=96.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee---eeEEee
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG---RAHFET 157 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~---~~~~~~ 157 (475)
....|+++|..++|||+|+.+|+. +.+... ...|+... ...+..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~--~~F~~~-------------------------------y~pTi~~~~~~~i~~~~ 58 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAK--DCYPET-------------------------------YVPTVFENYTAGLETEE 58 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhc--CCCCCC-------------------------------cCCceeeeeEEEEEECC
Confidence 456899999999999999998842 211110 00111110 111222
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~ 235 (475)
....+.||||+|.+.|.......++.||++|||.|.+.... |. ......+..+.. .++| +|+|.||+|+...
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~S---f~--~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~ 132 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWKAEIMDYCPSTR-ILLIGCKTDLRTD 132 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEECcccccc
Confidence 34668999999999998777777899999999999987532 11 001222233332 2566 8999999998321
Q ss_pred -CchHH-----HHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccc-ccccccc
Q 011910 236 -NWSKE-----RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 282 (475)
Q Consensus 236 -~~~~~-----~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~-gi~~l~~ 282 (475)
....+ ...-..++...+.++.++ .+++.+||++|. |+.+++.
T Consensus 133 ~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~-----~~~~EtSAktg~~~V~e~F~ 181 (232)
T cd04174 133 LSTLMELSNQKQAPISYEQGCALAKQLGA-----EVYLECSAFTSEKSIHSIFR 181 (232)
T ss_pred cchhhhhccccCCcCCHHHHHHHHHHcCC-----CEEEEccCCcCCcCHHHHHH
Confidence 00000 000112244455555543 268999999998 7999754
No 246
>PRK09866 hypothetical protein; Provisional
Probab=99.47 E-value=1.2e-12 Score=136.01 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=75.9
Q ss_pred CeeEEEEeCCCCcC-----cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC--CceEEEEEEccC
Q 011910 159 TTRFTILDAPGHKS-----YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMD 231 (475)
Q Consensus 159 ~~~~~liDtPGh~~-----f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~--i~~iivviNKiD 231 (475)
..++.|+||||... +...|...+..+|++++|||+..+.. ...+..+..++..+ .| +|+|+||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s-------~~DeeIlk~Lkk~~K~~P-VILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKS-------ISDEEVREAILAVGQSVP-LYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCC-------hhHHHHHHHHHhcCCCCC-EEEEEEccc
Confidence 36799999999633 34456778899999999999987642 34566667777666 47 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+... .....+.+.+.+...+...++. ...++||||++|.|+..+.
T Consensus 301 l~dr--eeddkE~Lle~V~~~L~q~~i~---f~eIfPVSAlkG~nid~LL 345 (741)
T PRK09866 301 QQDR--NSDDADQVRALISGTLMKGCIT---PQQIFPVSSMWGYLANRAR 345 (741)
T ss_pred CCCc--ccchHHHHHHHHHHHHHhcCCC---CceEEEEeCCCCCCHHHHH
Confidence 8321 1112334444444444333332 2479999999999999854
No 247
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.47 E-value=1.7e-13 Score=119.20 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=90.8
Q ss_pred EEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEE-eeeeeEEe--eCCeeEE
Q 011910 87 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFE--TETTRFT 163 (475)
Q Consensus 87 ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti-~~~~~~~~--~~~~~~~ 163 (475)
++|++++|||||+++|........ ....|. ......+. .....+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE--------------------------------EYETTIIDFYSKTIEVDGKKVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc--------------------------------ccccchhheeeEEEEECCEEEEEE
Confidence 589999999999999954322100 011111 11112222 2367799
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHH-----HHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~-----~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++|+||+..+.......+..+|++++|+|+..+... .... .+......+.| +++++||+|+......
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESF-------ENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVV 120 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHH-------HHHHHHHHHHHHhhccCCCc-EEEEEeccccccccch
Confidence 999999999988877788999999999999987431 1111 22333445677 9999999999433211
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.... ........ ...+++++|+.+|.|+.++
T Consensus 121 --~~~~----~~~~~~~~-----~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 121 --SEEE----LAEQLAKE-----LGVPYFETSAKTGENVEEL 151 (157)
T ss_pred --HHHH----HHHHHHhh-----cCCcEEEEecCCCCChHHH
Confidence 1110 01111111 2568999999999999875
No 248
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=9.4e-13 Score=116.51 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=104.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+...|+++|..++|||+|+.++.|....-... ..-|+..-...+.+....
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~Yq-----------------------------ATIGiDFlskt~~l~d~~ 70 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQ-----------------------------ATIGIDFLSKTMYLEDRT 70 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccccc-----------------------------ceeeeEEEEEEEEEcCcE
Confidence 444789999999999999999997765421100 002233223333344445
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCC---ceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV---TKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i---~~iivviNKiD~~~~~ 236 (475)
.++.+|||+|+++|....-+.++.+.+||+|.|.+.--. | .+|...+.-++..+- .-+++|-||-|| .+
T Consensus 71 vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~S---f---e~t~kWi~dv~~e~gs~~viI~LVGnKtDL--~d 142 (221)
T KOG0094|consen 71 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNS---F---ENTSKWIEDVRRERGSDDVIIFLVGNKTDL--SD 142 (221)
T ss_pred EEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccch---H---HHHHHHHHHHHhccCCCceEEEEEcccccc--cc
Confidence 678999999999999988899999999999999776422 2 266666666665532 236677799999 33
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+.. -..++=....+++ ++-|+.+||+.|.|+..++.
T Consensus 143 --krq--vs~eEg~~kAkel------~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 143 --KRQ--VSIEEGERKAKEL------NAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred --hhh--hhHHHHHHHHHHh------CcEEEEecccCCCCHHHHHH
Confidence 111 1111222333333 35799999999999998744
No 249
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.46 E-value=8.2e-14 Score=129.30 Aligned_cols=200 Identities=14% Similarity=0.171 Sum_probs=123.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccch--------HHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDD--------RTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG 151 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~--------~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~ 151 (475)
++...|.++|..||||||++.+|....+.-.. ..+.+..-.+...-|....|..+|.........||.....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 45567899999999999999999755442211 1222222233333455556666676666666777765544
Q ss_pred eeEEee-----------CCeeEEEEeCCCCcCcHHHHhhc--------cccCCEEEEEEecCCCccccccCCCcchHHHH
Q 011910 152 RAHFET-----------ETTRFTILDAPGHKSYVPNMISG--------ASQADIGVLVISARKGEFETGFEKGGQTREHV 212 (475)
Q Consensus 152 ~~~~~~-----------~~~~~~liDtPGh~~f~~~~~~~--------~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l 212 (475)
.+.... +...+.||||||+..-.....+| ...+-++++|||....-.++.|. .......
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM--SNMlYAc 174 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM--SNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH--HHHHHHH
Confidence 322111 23569999999986543222222 34577899999987765544444 4556666
Q ss_pred HHHHHcCCceEEEEEEccCCCCCCchHHH------HHHHHhhh-----hhHhhhhcCc---ccCCeeEEEeecccccccc
Q 011910 213 MLAKTLGVTKLLLVVNKMDDHTVNWSKER------YDEIESKM-----TPFLKASGYN---VKKDVQFLPISGLMGLNMK 278 (475)
Q Consensus 213 ~~~~~~~i~~iivviNKiD~~~~~~~~~~------~~~i~~~l-----~~~l~~~~~~---~~~~~~iipiSa~~g~gi~ 278 (475)
.++.+.++| +|||.||.|+....+..++ |++..++. ..+..+..+. ....++.+.+|+.+|.|++
T Consensus 175 Silyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 175 SILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 777788999 9999999999666544333 33333321 0111111100 0135789999999999999
Q ss_pred cccc
Q 011910 279 TRVD 282 (475)
Q Consensus 279 ~l~~ 282 (475)
+++.
T Consensus 254 df~~ 257 (366)
T KOG1532|consen 254 DFFT 257 (366)
T ss_pred HHHH
Confidence 8653
No 250
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.46 E-value=6.6e-13 Score=124.96 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=92.9
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee-eeEEee--CC
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFET--ET 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~-~~~~~~--~~ 159 (475)
.+|+++|..++|||+|+.+|.. +..... ...|+... ...+.. ..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~--~~f~~~-------------------------------y~pTi~~~~~~~~~~~~~~ 48 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK--DAYPGS-------------------------------YVPTVFENYTASFEIDKRR 48 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCc-------------------------------cCCccccceEEEEEECCEE
Confidence 4799999999999999999843 111100 00111100 012223 33
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHH-HHHHH--cCCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT--LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l-~~~~~--~~i~~iivviNKiD~~~~~ 236 (475)
..+.||||+|+..|.......+..+|++|+|+|...... |+ .....+ ..... .++| +|+|.||+|+...
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~S---f~---~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~- 120 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPET---LD---SVLKKWQGETQEFCPNAK-VVLVGCKLDMRTD- 120 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEECcccccc-
Confidence 568899999999998877778899999999999987632 11 111111 12221 3577 9999999998321
Q ss_pred chHHHHHHH---------HhhhhhHhhhhcCcccCCeeEEEeecccccc-cccccc
Q 011910 237 WSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~iipiSa~~g~g-i~~l~~ 282 (475)
. ...+.+ .++...+.+..| .++++.+||+++.| +.+++.
T Consensus 121 -~-~~~~~~~~~~~~pIs~e~g~~~ak~~~-----~~~y~E~SAk~~~~~V~~~F~ 169 (222)
T cd04173 121 -L-ATLRELSKQRLIPVTHEQGTVLAKQVG-----AVSYVECSSRSSERSVRDVFH 169 (222)
T ss_pred -h-hhhhhhhhccCCccCHHHHHHHHHHcC-----CCEEEEcCCCcCCcCHHHHHH
Confidence 0 111111 122233333433 24899999999985 998754
No 251
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.45 E-value=4.1e-13 Score=113.37 Aligned_cols=107 Identities=23% Similarity=0.304 Sum_probs=73.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|.+|+|||||+++|+...... .....+.|.......+...+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~------------------------------~~~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK------------------------------VSNIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE------------------------------ESSSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc------------------------------ccccccceeeeeeeeeeeceeeEE
Confidence 58999999999999999995321100 011134444444455677889999
Q ss_pred EEeCCCCcC---------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEc
Q 011910 164 ILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (475)
Q Consensus 164 liDtPGh~~---------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNK 229 (475)
|+||||..+ ........+..+|++++|+|+..... ....+.+..++ .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-------~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-------EDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-------HHHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999754 23345555688999999999877421 24455555564 5666 9999998
No 252
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=4.2e-13 Score=120.87 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=103.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.....|.++|..++|||.|+-++.... .... + -..-|+........+.-..
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~--f~~~--------------------~-------~sTiGIDFk~kti~l~g~~ 60 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDS--FNTS--------------------F-------ISTIGIDFKIKTIELDGKK 60 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhcc--CcCC--------------------c-------cceEEEEEEEEEEEeCCeE
Confidence 456789999999999999998873211 1100 0 0013343333333333344
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
..+.+|||.|+++|...+-+.++.|++++||+|...... |+.-..+.+.+..-...+++ +++|-||+|+..
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~S---feni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~----- 131 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKS---FENIRNWIKNIDEHASDDVV-KILVGNKCDLEE----- 131 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHH---HHHHHHHHHHHHhhCCCCCc-EEEeeccccccc-----
Confidence 568999999999999999999999999999999876532 22101223333333334788 889999999832
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..+--.++-+++..++| ++|+.+||++|.||.+.+
T Consensus 132 -~R~V~~e~ge~lA~e~G------~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 132 -KRQVSKERGEALAREYG------IKFFETSAKTNFNIEEAF 166 (207)
T ss_pred -cccccHHHHHHHHHHhC------CeEEEccccCCCCHHHHH
Confidence 11122334445555554 589999999999999853
No 253
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.44 E-value=2.5e-13 Score=118.89 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=103.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeee--eEEee
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR--AHFET 157 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~--~~~~~ 157 (475)
...+.|.++|.+|+|||+|++++++..- .. ....||...+ ..+..
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF----------~~-----------------------qykaTIgadFltKev~V 53 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF----------SQ-----------------------QYKATIGADFLTKEVQV 53 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHH----------HH-----------------------HhccccchhheeeEEEE
Confidence 4557899999999999999999854321 01 1122332221 12223
Q ss_pred CC--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCC
Q 011910 158 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~ 232 (475)
++ ..+.||||+|+++|...-....+.||+++||.|.+....-.+++ .--.|.+.++.- ...| |||+-||+|+
T Consensus 54 d~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~--~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~ 130 (210)
T KOG0394|consen 54 DDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLE--NWRKEFLIQASPQDPETFP-FVILGNKIDV 130 (210)
T ss_pred cCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHH--HHHHHHHHhcCCCCCCccc-EEEEcccccC
Confidence 33 45789999999999988888899999999999988754311111 122333333332 2467 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..- +. ........+.+++.. .++|++.+||+.+.|+.+.+
T Consensus 131 ~~~---~~-r~VS~~~Aq~WC~s~-----gnipyfEtSAK~~~NV~~AF 170 (210)
T KOG0394|consen 131 DGG---KS-RQVSEKKAQTWCKSK-----GNIPYFETSAKEATNVDEAF 170 (210)
T ss_pred CCC---cc-ceeeHHHHHHHHHhc-----CCceeEEecccccccHHHHH
Confidence 431 11 123344555666664 47899999999999999864
No 254
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.44 E-value=7e-13 Score=118.41 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=95.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
.|+++|+.++|||||+.+|.. +..... .....|.........+......+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~--~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l~ 51 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN--GEFPEN---------------------------YIPTIGIDSYSKEVSIDGKPVNLE 51 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--SSTTSS---------------------------SETTSSEEEEEEEEEETTEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHh--hccccc---------------------------cccccccccccccccccccccccc
Confidence 489999999999999999842 211100 001122333333333333446699
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCCchHH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~~~~~ 240 (475)
|+|++|+..|.......++.+|++|+|.|.+.... |. .....+..+... ..| ++|+.||.|+.. ..+-
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S---~~---~~~~~~~~i~~~~~~~~~-iivvg~K~D~~~--~~~v 122 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEES---FE---NLKKWLEEIQKYKPEDIP-IIVVGNKSDLSD--EREV 122 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHH---HH---THHHHHHHHHHHSTTTSE-EEEEEETTTGGG--GSSS
T ss_pred ccccccccccccccccccccccccccccccccccc---cc---cccccccccccccccccc-ceeeeccccccc--cccc
Confidence 99999999998777677889999999999887532 22 233333333332 345 999999999832 1111
Q ss_pred HHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 241 ~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. .++...+.+..+ .+++.+|++++.|+.+++
T Consensus 123 ~----~~~~~~~~~~~~------~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 123 S----VEEAQEFAKELG------VPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp C----HHHHHHHHHHTT------SEEEEEBTTTTTTHHHHH
T ss_pred h----hhHHHHHHHHhC------CEEEEEECCCCCCHHHHH
Confidence 1 123344455443 589999999999999863
No 255
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.43 E-value=4.8e-13 Score=122.92 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=89.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEe-eeeeEEeeCCee
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGRAHFETETTR 161 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~-~~~~~~~~~~~~ 161 (475)
.+|+++|+.|+|||||+++|.. +..... ....+... .....+......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~ 50 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPEE-----------------------------YHPTVFENYVTDCRVDGKPVQ 50 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc-----------------------------cCCcccceEEEEEEECCEEEE
Confidence 4799999999999999998842 211100 00000000 001111212345
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHH--cCCceEEEEEEccCCCCCCch
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~--~~i~~iivviNKiD~~~~~~~ 238 (475)
+.++||||+..|.......++.+|++|+|.|...... |. ... ..+..+.. -.+| +|+|.||+|+...+..
T Consensus 51 l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~ 123 (187)
T cd04129 51 LALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDS---LE---NVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVA 123 (187)
T ss_pred EEEEECCCChhccccchhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCccc
Confidence 8899999998886544445678999999999876432 11 111 12233322 2577 9999999998432111
Q ss_pred H-----HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 K-----ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~-----~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. .++.. .+....+.+..+. .+++.+||++|.|+.+++.
T Consensus 124 ~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 166 (187)
T cd04129 124 KEEYRTQRFVP-IQQGKRVAKEIGA-----KKYMECSALTGEGVDDVFE 166 (187)
T ss_pred ccccccCCcCC-HHHHHHHHHHhCC-----cEEEEccCCCCCCHHHHHH
Confidence 0 01100 1122333444432 3799999999999999744
No 256
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.42 E-value=2.9e-12 Score=110.18 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=105.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|-++|.-||||||++.+|+..... .-..|......++..++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~----------------------------------~i~pt~gf~Iktl~~~~ 59 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTD----------------------------------TISPTLGFQIKTLEYKG 59 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcc----------------------------------ccCCccceeeEEEEecc
Confidence 34688999999999999999998432210 01233444445678899
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~ 235 (475)
+.++++|..|+..+..-+-.+...+|+.|+|||..+..- -..+..++..+. ..|.| ++|+.||.|++++
T Consensus 60 ~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r------~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 60 YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR------MQECKQELTELLVEERLAGAP-LLVLANKQDLPGA 132 (185)
T ss_pred eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH------HHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc
Confidence 999999999999999999889999999999999976531 123333433332 23667 8899999999633
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~ 279 (475)
.+.+.+..+ -.+..++++. .++++-+||.+|+++.+
T Consensus 133 -l~~~~i~~~-~~L~~l~ks~------~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 133 -LSLEEISKA-LDLEELAKSH------HWRLVKCSAVTGEDLLE 168 (185)
T ss_pred -cCHHHHHHh-hCHHHhcccc------CceEEEEeccccccHHH
Confidence 222222222 2344444443 57899999999988766
No 257
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.41 E-value=5.4e-12 Score=118.55 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=92.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|+.|+|||||+.+++. +...... ....|..+...........
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~--~~~~~~~---------------------------~~t~~~~~~~~~~~~~~~~ 57 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLT--GEFEKKY---------------------------IPTLGVEVHPLKFYTNCGP 57 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHh--CCCCCCC---------------------------CCccceEEEEEEEEECCeE
Confidence 3447899999999999999987642 2111100 0011222222112223345
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH--HcCCceEEEEEEccCCCCCCc
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~--~~~i~~iivviNKiD~~~~~~ 237 (475)
..+.++||||+.+|..........+|++|+|+|....... ......+..+. ..++| ++++.||+|+.....
T Consensus 58 i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~~ 130 (215)
T PTZ00132 58 ICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITY------KNVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQV 130 (215)
T ss_pred EEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHH------HHHHHHHHHHHHhCCCCC-EEEEEECccCccccC
Confidence 7799999999999977666667789999999999876431 11122222221 13567 888999999832111
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. + ...+.... ...++++||++|.|+.+.+
T Consensus 131 ~~----~----~~~~~~~~------~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 131 KA----R----QITFHRKK------NLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred CH----H----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 11 1 11222222 3578999999999998753
No 258
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.40 E-value=3.4e-12 Score=118.28 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=91.5
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-CCee
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTR 161 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~ 161 (475)
++|+++|.+|+|||||+++|+..... .. |. . ..+. ...|.... .+.. ....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~-~~-------------~~-----~-~~~~------~~~t~~~~--~~~~~~~~~ 53 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHE-EE-------------GA-----A-PTGV------VETTMKRT--PYPHPKFPN 53 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCC-CC-------------Cc-----c-ccCc------cccccCce--eeecCCCCC
Confidence 57999999999999999999542110 00 00 0 0000 00111111 1111 1347
Q ss_pred EEEEeCCCCcCc---HHHHh--hccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 162 FTILDAPGHKSY---VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 162 ~~liDtPGh~~f---~~~~~--~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
+.++||||..+. ....+ .++..+|++++|.|. ... ......+..+...+.| +++|+||+|+...+
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~--~~~-------~~d~~~~~~l~~~~~~-~ilV~nK~D~~~~~ 123 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST--RFS-------SNDVKLAKAIQCMGKK-FYFVRTKVDRDLSN 123 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC--CCC-------HHHHHHHHHHHHhCCC-EEEEEecccchhhh
Confidence 899999997532 11111 235678988887553 221 3455566777777877 99999999983222
Q ss_pred c---------hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecc--cccccccc
Q 011910 237 W---------SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL--MGLNMKTR 280 (475)
Q Consensus 237 ~---------~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~--~g~gi~~l 280 (475)
. .+..++++.+.+...++..+.. ..+++++|+. .+.|+..|
T Consensus 124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~---~p~v~~vS~~~~~~~~~~~l 175 (197)
T cd04104 124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVS---EPPVFLVSNFDPSDYDFPKL 175 (197)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHcCCC---CCCEEEEeCCChhhcChHHH
Confidence 1 1133555566666666654443 4589999998 46666654
No 259
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.40 E-value=3.5e-12 Score=113.92 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=85.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--e
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 160 (475)
++|+++|+.++|||||+.+++. +..... ..+. .+. . ...+..++ .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~--~~f~~~------------------------~~~~---~~~-~---~~~i~~~~~~~ 47 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT--GSYVQL------------------------ESPE---GGR-F---KKEVLVDGQSH 47 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--CCCCCC------------------------CCCC---ccc-e---EEEEEECCEEE
Confidence 3689999999999999998742 211100 0000 010 0 11233334 5
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~ 236 (475)
.+.|+||+|...+ ...+.+|++++|+|.+.... |+ .....+..+.. .++| +++|.||+|+...+
T Consensus 48 ~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~s---f~---~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~ 115 (158)
T cd04103 48 LLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEAS---FQ---TVYNLYHQLSSYRNISEIP-LILVGTQDAISESN 115 (158)
T ss_pred EEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcC
Confidence 6899999999753 23467899999999887543 21 22333333332 2466 89999999983211
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..... .++...+.+.. ..++++++||++|.|+.+++
T Consensus 116 --~~~v~--~~~~~~~~~~~-----~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 116 --PRVID--DARARQLCADM-----KRCSYYETCATYGLNVERVF 151 (158)
T ss_pred --CcccC--HHHHHHHHHHh-----CCCcEEEEecCCCCCHHHHH
Confidence 00000 11122233222 13689999999999999864
No 260
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.40 E-value=2.8e-12 Score=118.72 Aligned_cols=138 Identities=19% Similarity=0.244 Sum_probs=89.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|.+|+|||||+|.|+....... .....+.|.......+.+.++.+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~-----------------------------~~~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES-----------------------------KLSASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc-----------------------------ccCCCCcccccceeeEEECCeEE
Confidence 5799999999999999999965432110 01124667666667777889999
Q ss_pred EEEeCCCCcCcH-------HHHhh----ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-C---CceEEEEE
Q 011910 163 TILDAPGHKSYV-------PNMIS----GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G---VTKLLLVV 227 (475)
Q Consensus 163 ~liDtPGh~~f~-------~~~~~----~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~-~---i~~iivvi 227 (475)
++|||||..+.. ..+.. ....+|++|+|+++.. .. ...++.+..+... | .+++|+++
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t-------~~d~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FT-------EEEEQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cC-------HHHHHHHHHHHHHhChHhHhcEEEEE
Confidence 999999976541 12222 2346899999999876 32 3455556555443 3 24588999
Q ss_pred EccCCCCCCchHHHHHHHHhhhhhHhhhhc
Q 011910 228 NKMDDHTVNWSKERYDEIESKMTPFLKASG 257 (475)
Q Consensus 228 NKiD~~~~~~~~~~~~~i~~~l~~~l~~~~ 257 (475)
|+.|....+-.++.+......++.+++.++
T Consensus 124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 124 TRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred ECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 999985433222223333355666666654
No 261
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=8.7e-13 Score=131.95 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=104.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
+.-+.|+|+|.+|+|||||+|+|......+. ....|.|-+.-...++.++
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIV------------------------------Spv~GTTRDaiea~v~~~G 315 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIV------------------------------SPVPGTTRDAIEAQVTVNG 315 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEe------------------------------CCCCCcchhhheeEeecCC
Confidence 4448999999999999999999965433322 2247889898888999999
Q ss_pred eeEEEEeCCCCcCc---------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC-----C-----
Q 011910 160 TRFTILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-----V----- 220 (475)
Q Consensus 160 ~~~~liDtPGh~~f---------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~-----i----- 220 (475)
+.+.|+||+|...- +...-..+..||++++||||.++.++ +.......+...+ .
T Consensus 316 ~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~-------sd~~i~~~l~~~~~g~~~~~~~~~ 388 (531)
T KOG1191|consen 316 VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTE-------SDLKIARILETEGVGLVVIVNKME 388 (531)
T ss_pred eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccc-------cchHHHHHHHHhccceEEEecccc
Confidence 99999999998762 22223346789999999999988764 2222223332222 1
Q ss_pred -ceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEE-Eeeccccccccccccc
Q 011910 221 -TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFL-PISGLMGLNMKTRVDK 283 (475)
Q Consensus 221 -~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~ii-piSa~~g~gi~~l~~~ 283 (475)
.++|+++||+|+... +.++......+....|. ...+++ .+|+++++|+..|...
T Consensus 389 ~~~~i~~~nk~D~~s~------~~~~~~~~~~~~~~~~~---~~~~i~~~vs~~tkeg~~~L~~a 444 (531)
T KOG1191|consen 389 KQRIILVANKSDLVSK------IPEMTKIPVVYPSAEGR---SVFPIVVEVSCTTKEGCERLSTA 444 (531)
T ss_pred ccceEEEechhhccCc------cccccCCceeccccccC---cccceEEEeeechhhhHHHHHHH
Confidence 347889999998432 11111111112222111 133444 4999999999997653
No 262
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=9.5e-13 Score=115.51 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=101.1
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
...+.++|..|+|||.|+-++.. ..+.. ..| -.-|+..-....++.-...+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~--krF~~----------------------~hd-----~TiGvefg~r~~~id~k~IK 56 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTD--KRFQP----------------------VHD-----LTIGVEFGARMVTIDGKQIK 56 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhc--cCccc----------------------ccc-----ceeeeeeceeEEEEcCceEE
Confidence 35789999999999999976621 11110 000 01222222222333334566
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCCch
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~~~ 238 (475)
++||||.||+.|..-+-+..+.+-+||||.|...-.+ |. ....+|.-++.. +.. ++++-||+|+..
T Consensus 57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~s---F~---hL~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~---- 125 (216)
T KOG0098|consen 57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRES---FN---HLTSWLEDARQHSNENMV-IMLIGNKSDLEA---- 125 (216)
T ss_pred EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhh---HH---HHHHHHHHHHHhcCCCcE-EEEEcchhhhhc----
Confidence 8999999999999988889999999999999887543 22 233334444444 444 667779999932
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+.+-..++-+.+.++.|+ .+..+||++++|+++.+.
T Consensus 126 --rR~Vs~EEGeaFA~ehgL------ifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 126 --RREVSKEEGEAFAREHGL------IFMETSAKTAENVEEAFI 161 (216)
T ss_pred --cccccHHHHHHHHHHcCc------eeehhhhhhhhhHHHHHH
Confidence 223445566677777765 688999999999998643
No 263
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.34 E-value=7e-12 Score=119.13 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=90.7
Q ss_pred cccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeE
Q 011910 75 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 154 (475)
Q Consensus 75 ~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~ 154 (475)
.+..-+.+..|++||.+|||||||+++|......+-. |+| .|+......
T Consensus 189 ~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~-------------------YaF------------TTL~P~iG~ 237 (366)
T KOG1489|consen 189 IELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAH-------------------YAF------------TTLRPHIGT 237 (366)
T ss_pred EEEEeeeecccceecCCCCcHHHHHHHhhccCCcccc-------------------cce------------eeeccccce
Confidence 3444566678999999999999999999433322211 111 233333333
Q ss_pred EeeCCe-eEEEEeCCCCcCc-------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----c-CCc
Q 011910 155 FETETT-RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----L-GVT 221 (475)
Q Consensus 155 ~~~~~~-~~~liDtPGh~~f-------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~-~i~ 221 (475)
..+++. .+++-|.||...= --..++-+..|+..++|||.+.+..-+.+ .+....+..+.. + ..|
T Consensus 238 v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~---~~~~lL~~ELe~yek~L~~rp 314 (366)
T KOG1489|consen 238 VNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPW---QQLQLLIEELELYEKGLADRP 314 (366)
T ss_pred eeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHH---HHHHHHHHHHHHHhhhhccCc
Confidence 334443 3999999995321 12223334578999999999876211001 111111111211 2 234
Q ss_pred eEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 222 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 222 ~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.++|+||||++.+ ++ ...+++...++ +..++|+||++|+|+.+|.
T Consensus 315 -~liVaNKiD~~ea---e~---~~l~~L~~~lq--------~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 315 -ALIVANKIDLPEA---EK---NLLSSLAKRLQ--------NPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred -eEEEEeccCchhH---HH---HHHHHHHHHcC--------CCcEEEeeeccccchHHHH
Confidence 6789999998422 11 11222322222 2369999999999998853
No 264
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.34 E-value=4.3e-12 Score=114.34 Aligned_cols=114 Identities=16% Similarity=0.232 Sum_probs=66.1
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe---eC
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE---TE 158 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~---~~ 158 (475)
...|.++|+.|||||+|+.+|.+... .. .-.++ .....+. ..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~--~~--------------------------------T~tS~-e~n~~~~~~~~~ 47 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT--VP--------------------------------TVTSM-ENNIAYNVNNSK 47 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------------------------------------B---S-SEEEECCGSSTC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc--CC--------------------------------eeccc-cCCceEEeecCC
Confidence 36799999999999999999954311 00 00111 1111111 24
Q ss_pred CeeEEEEeCCCCcCcHHHHhhc---cccCCEEEEEEecCCCccccccCCCcchHHHHHHHH---H---cCCceEEEEEEc
Q 011910 159 TTRFTILDAPGHKSYVPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---T---LGVTKLLLVVNK 229 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~---~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~---~---~~i~~iivviNK 229 (475)
+..+.+||+|||.+........ +..+-++|+|||+..- ...+ ..+-++|..+. . .++| ++|++||
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~--~~~~---~~~Ae~Ly~iL~~~~~~~~~~p-iLIacNK 121 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD--QKEL---RDVAEYLYDILSDTEVQKNKPP-ILIACNK 121 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH--HHHH---HHHHHHHHHHHHHHHCCTT--E-EEEEEE-
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc--hhhH---HHHHHHHHHHHHhhhhccCCCC-EEEEEeC
Confidence 5679999999999987777665 7789999999999742 1111 12233332211 1 2455 9999999
Q ss_pred cCCCCCC
Q 011910 230 MDDHTVN 236 (475)
Q Consensus 230 iD~~~~~ 236 (475)
.|+..+.
T Consensus 122 ~Dl~~A~ 128 (181)
T PF09439_consen 122 QDLFTAK 128 (181)
T ss_dssp TTSTT--
T ss_pred ccccccC
Confidence 9997654
No 265
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.32 E-value=1.2e-11 Score=118.15 Aligned_cols=87 Identities=22% Similarity=0.231 Sum_probs=63.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...-.|+++|.+++|||||+++|-.....+. .| .-.|....+..+.+++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva-------------------~y------------~FTTl~~VPG~l~Y~g 109 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVA-------------------DY------------PFTTLEPVPGMLEYKG 109 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCcccc-------------------cc------------CceecccccceEeecC
Confidence 4456899999999999999999932211110 01 2245566667788999
Q ss_pred eeEEEEeCCCCcCc-------HHHHhhccccCCEEEEEEecCCCc
Q 011910 160 TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGE 197 (475)
Q Consensus 160 ~~~~liDtPGh~~f-------~~~~~~~~~~~D~~vlVVda~~g~ 197 (475)
.++.|+|+||...= -+..++.++.||.+++|+|+..+.
T Consensus 110 a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 110 AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 99999999996422 355777789999999999998653
No 266
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.32 E-value=1.9e-11 Score=113.05 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=66.8
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHH-HHHHHHH--cCCceEEEEEEccCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~-~l~~~~~--~~i~~iivviNKiD~~~~ 235 (475)
...+.||||+|+..+.. ....+.+|++|||.|...... |+ ..+. .+..+.. .++| +|+|.||+|+...
T Consensus 65 ~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 135 (195)
T cd01873 65 SVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNS---LR---NVKTMWYPEIRHFCPRVP-VILVGCKLDLRYA 135 (195)
T ss_pred EEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChhH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhcccc
Confidence 46799999999976432 235679999999999887532 11 2221 2233332 2567 8999999998421
Q ss_pred CchHH-------------HHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKE-------------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~-------------~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+-... ...-..++...+.++.| ++++.+||++|.|+.+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~F 188 (195)
T cd01873 136 DLDEVNRARRPLARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDVF 188 (195)
T ss_pred ccchhhhcccccccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHHH
Confidence 10000 00011223444455443 479999999999999864
No 267
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=2.1e-11 Score=114.34 Aligned_cols=160 Identities=17% Similarity=0.252 Sum_probs=102.4
Q ss_pred ccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeee-eE
Q 011910 76 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AH 154 (475)
Q Consensus 76 ~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~-~~ 154 (475)
+...+.+.||.++|.+|+|||+|+|+|........ . .-|++.+... ..
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v------------------------~-------~vg~~t~~~~~~~ 81 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEV------------------------S-------KVGVGTDITTRLR 81 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCcee------------------------e-------ecccCCCchhhHH
Confidence 44467889999999999999999999952111100 0 0111111111 11
Q ss_pred EeeCCeeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCC-ceEEEE
Q 011910 155 FETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLV 226 (475)
Q Consensus 155 ~~~~~~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i-~~iivv 226 (475)
.......++|+||||..+ |.......+...|.+++++++.+... +.....+......+. .+++++
T Consensus 82 ~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-------~~d~~f~~dVi~~~~~~~~i~~ 154 (296)
T COG3596 82 LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-------GTDEDFLRDVIILGLDKRVLFV 154 (296)
T ss_pred hhccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccc-------cCCHHHHHHHHHhccCceeEEE
Confidence 234567899999999876 66667777888999999999988753 355555555555555 569999
Q ss_pred EEccCCCCC--CchHH----------HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 227 VNKMDDHTV--NWSKE----------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 227 iNKiD~~~~--~~~~~----------~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
||..|+... +|... -.++-.+.+.+++.. .-|++.+|+..++|+..+
T Consensus 155 VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l 213 (296)
T COG3596 155 VTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-------VKPVVAVSGRLPWGLKEL 213 (296)
T ss_pred EehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh-------cCCeEEeccccCccHHHH
Confidence 999998433 44421 122222233333332 347888888888888875
No 268
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.29 E-value=6.3e-12 Score=107.49 Aligned_cols=153 Identities=19% Similarity=0.204 Sum_probs=100.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...+.|.++|..|+|||+|+-+++ ...+++.. ...-|+..++....+.-..
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv--~~~fd~~~---------------------------~~tIGvDFkvk~m~vdg~~ 59 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFV--SNTFDDLH---------------------------PTTIGVDFKVKVMQVDGKR 59 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHH--hcccCccC---------------------------CceeeeeEEEEEEEEcCce
Confidence 345789999999999999997662 22221100 0013555566666666677
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc----CCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~----~i~~iivviNKiD~~~~ 235 (475)
.++.||||+|+++|...+-+..+.|-++|+|.|.+...+ |. ...-.+..+..+ ++- .++|-||+|...
T Consensus 60 ~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt---f~---kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes- 131 (209)
T KOG0080|consen 60 LKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT---FV---KLDIWLKELDLYSTNPDII-KMLVGNKIDKES- 131 (209)
T ss_pred EEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhh---HH---hHHHHHHHHHhhcCCccHh-Hhhhcccccchh-
Confidence 889999999999999999999999999999999887543 11 121122222222 333 357899999721
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+| .-.+++=..+.+++ .+-|+.+||++.+|+..-
T Consensus 132 ----~R-~V~reEG~kfAr~h------~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 132 ----ER-VVDREEGLKFARKH------RCLFIECSAKTRENVQCC 165 (209)
T ss_pred ----cc-cccHHHHHHHHHhh------CcEEEEcchhhhccHHHH
Confidence 11 11222333455544 457999999999999873
No 269
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=1.9e-11 Score=117.13 Aligned_cols=152 Identities=20% Similarity=0.280 Sum_probs=91.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
..+.|+|.|++|+|||||+.+|-.....+. .|.| .|=.+...+|+....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA-------------------~YPF------------TTK~i~vGhfe~~~~ 215 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVA-------------------PYPF------------TTKGIHVGHFERGYL 215 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccC-------------------CCCc------------cccceeEeeeecCCc
Confidence 457899999999999999999822221111 1122 222334456777888
Q ss_pred eEEEEeCCCCcCc--------HHHHhhccc-cCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 161 RFTILDAPGHKSY--------VPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 161 ~~~liDtPGh~~f--------~~~~~~~~~-~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
++.+|||||.-|- -.+.+.+++ ..+++|+++|+++-. |+..+.|..-.-..-..++.| +++|+||+|
T Consensus 216 R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c---gy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D 291 (346)
T COG1084 216 RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC---GYSLEEQISLLEEIKELFKAP-IVVVINKID 291 (346)
T ss_pred eEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc---CCCHHHHHHHHHHHHHhcCCC-eEEEEeccc
Confidence 9999999996443 333445554 689999999998742 343323322222222234555 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
... .+.++++... +...| ....+-+|+..+.+++.+
T Consensus 292 ~~~----~e~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 292 IAD----EEKLEEIEAS----VLEEG-----GEEPLKISATKGCGLDKL 327 (346)
T ss_pred ccc----hhHHHHHHHH----HHhhc-----cccccceeeeehhhHHHH
Confidence 832 2344444433 22222 123566777777777653
No 270
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.28 E-value=7.9e-11 Score=109.29 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=74.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe-----eC
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-----TE 158 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~-----~~ 158 (475)
+|+++|..++|||||+.+++... .... ....-|.++......+. ..
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~--f~~~---------------------------~~~Tig~~~~~k~~~~~~~~~~~~ 52 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ--VLGR---------------------------PSWTVGCSVDVKHHTYKEGTPEEK 52 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC---------------------------CCcceeeeEEEEEEEEcCCCCCCc
Confidence 68999999999999999984321 1100 00011222222222221 12
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---------------------
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--------------------- 217 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--------------------- 217 (475)
...+.|+||+|++.|........+.+|++|||.|.+..... + .....+..+..
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf---~---~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~ 126 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSS---Q---NLQRWSLEALNKDTFPTGLLVTNGDYDSEQFG 126 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHH---H---HHHHHHHHHHHhhccccccccccccccccccC
Confidence 35789999999999987777778899999999999886431 1 22233333322
Q ss_pred -cCCceEEEEEEccCCC
Q 011910 218 -LGVTKLLLVVNKMDDH 233 (475)
Q Consensus 218 -~~i~~iivviNKiD~~ 233 (475)
.++| +|+|.||+|+.
T Consensus 127 ~~~~P-iilVGnK~Dl~ 142 (202)
T cd04102 127 GNQIP-LLVIGTKLDQI 142 (202)
T ss_pred CCCce-EEEEEECccch
Confidence 2467 99999999983
No 271
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.5e-11 Score=109.07 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=100.6
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhh--cceEEeeeeeEEeeCC
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI--KGKTVEVGRAHFETET 159 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~--~g~ti~~~~~~~~~~~ 159 (475)
...|+++|.+++|||-|+.++... ....+.. -|+........+...-
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrn-------------------------------EF~~~SksTIGvef~t~t~~vd~k~ 62 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRN-------------------------------EFSLESKSTIGVEFATRTVNVDGKT 62 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhccc-------------------------------ccCcccccceeEEEEeeceeecCcE
Confidence 345999999999999999988211 1111111 2333333333344444
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~ 236 (475)
.+..||||+|+++|..-+.+..+.|-+|+||.|.+...+ | ....+.|..++.. +++ +++|-||+||-.
T Consensus 63 vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~T---f---env~rWL~ELRdhad~niv-imLvGNK~DL~~-- 133 (222)
T KOG0087|consen 63 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQT---F---ENVERWLKELRDHADSNIV-IMLVGNKSDLNH-- 133 (222)
T ss_pred EEEeeecccchhhhccccchhhcccceeEEEEechhHHH---H---HHHHHHHHHHHhcCCCCeE-EEEeecchhhhh--
Confidence 667999999999999888888899999999999987643 2 1455556666654 566 788899999921
Q ss_pred chHHHHHHHH-hhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIE-SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~-~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
++.+. ++-+.+..+. ...|+.+||+.+.|+++.+.
T Consensus 134 -----lraV~te~~k~~Ae~~------~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 134 -----LRAVPTEDGKAFAEKE------GLFFLETSALDATNVEKAFE 169 (222)
T ss_pred -----ccccchhhhHhHHHhc------CceEEEecccccccHHHHHH
Confidence 11221 2222233322 45899999999999998653
No 272
>PLN00023 GTP-binding protein; Provisional
Probab=99.26 E-value=6.4e-11 Score=115.70 Aligned_cols=145 Identities=16% Similarity=0.121 Sum_probs=87.6
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 157 (475)
+....+|+++|+.++|||||+.+|+.. ..... ....-|.+.......+..
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g--~F~~~---------------------------~~pTIG~d~~ik~I~~~~~ 68 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKG--SSIAR---------------------------PPQTIGCTVGVKHITYGSP 68 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcC--Ccccc---------------------------cCCceeeeEEEEEEEECCc
Confidence 455678999999999999999998421 11100 001122232222222211
Q ss_pred ------------CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-------
Q 011910 158 ------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------- 218 (475)
Q Consensus 158 ------------~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~------- 218 (475)
....+.|+||+|++.|...+-..++.+|++|+|+|.+.... | ......+..+...
T Consensus 69 ~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~S---F---enL~kWl~eI~~~~~~s~p~ 142 (334)
T PLN00023 69 GSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT---K---TSLQKWASEVAATGTFSAPL 142 (334)
T ss_pred ccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhccccccc
Confidence 23569999999999998877778899999999999887432 1 1223333333332
Q ss_pred --------CCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCc
Q 011910 219 --------GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (475)
Q Consensus 219 --------~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 259 (475)
++| +|||.||+|+....-.........++.+.++++.|+-
T Consensus 143 ~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 143 GSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred ccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 366 8999999999321100000012345566677777654
No 273
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=8.5e-12 Score=105.13 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=102.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
..+.|+|+..+|||+|+-+.+..+ |-.+++. .-|+..+.....-.-....+
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddS----------------------Ft~afvs-------TvGidFKvKTvyr~~kRikl 72 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDS----------------------FTSAFVS-------TVGIDFKVKTVYRSDKRIKL 72 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccc----------------------cccceee-------eeeeeEEEeEeeecccEEEE
Confidence 378899999999999997653222 1112221 13454444433222234678
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 242 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~ 242 (475)
.++||.|++.|..-+....+.|++.||+.|......-+.+ ....-.+......+.+ +|+|.||+|+... |.
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~sv---qdw~tqIktysw~naq-vilvgnKCDmd~e-----Rv 143 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSV---QDWITQIKTYSWDNAQ-VILVGNKCDMDSE-----RV 143 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHH---HHHHHHheeeeccCce-EEEEecccCCccc-----ee
Confidence 9999999999988888889999999999998765321111 1122223333345777 9999999999321 21
Q ss_pred HHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccccc
Q 011910 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK 283 (475)
Q Consensus 243 ~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~ 283 (475)
-..+..+.+...+|| .++.+||+.+.|+.+++++
T Consensus 144 -is~e~g~~l~~~LGf------efFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 144 -ISHERGRQLADQLGF------EFFETSAKENINVKQVFER 177 (193)
T ss_pred -eeHHHHHHHHHHhCh------HHhhhcccccccHHHHHHH
Confidence 112334456667776 5899999999999987553
No 274
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.7e-11 Score=103.95 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=97.1
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
...+.++|+.|+|||.|+.+++...-. +. ....-|+.........-....+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfk--Dd---------------------------ssHTiGveFgSrIinVGgK~vK 59 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFK--DD---------------------------SSHTIGVEFGSRIVNVGGKTVK 59 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhc--cc---------------------------ccceeeeeecceeeeecCcEEE
Confidence 357899999999999999998543211 10 0001222222222333334567
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCce--EEEEEEccCCCCCCchH
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK--LLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~--iivviNKiD~~~~~~~~ 239 (475)
+.||||+|+++|..-+-+..+.|-+++||.|++.... |. ..-..+.-++.+.-|. +|++-||-|+... .+
T Consensus 60 LQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrds---fn---aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~--R~ 131 (214)
T KOG0086|consen 60 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDS---FN---ALTNWLTDARTLASPNIVVILCGNKKDLDPE--RE 131 (214)
T ss_pred EEEeecccHHHHHHHHHHHhccccceEEEEeccchhh---HH---HHHHHHHHHHhhCCCcEEEEEeCChhhcChh--hh
Confidence 8999999999999888888999999999999876532 21 3334455566665444 4555699999321 12
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
-.+ .+...+.. .+.+-+..+||++|+|+++-
T Consensus 132 Vtf----lEAs~Faq------Enel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 132 VTF----LEASRFAQ------ENELMFLETSALTGENVEEA 162 (214)
T ss_pred hhH----HHHHhhhc------ccceeeeeecccccccHHHH
Confidence 222 22222332 23567899999999999984
No 275
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.25 E-value=9.2e-12 Score=105.29 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=71.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+|+|+.++|||||+++|+..... +........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 5899999999999999999543221 0000011123333333333444445599
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHH---HHHHHH--cCCceEEEEEEccC
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH---VMLAKT--LGVTKLLLVVNKMD 231 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~---l~~~~~--~~i~~iivviNKiD 231 (475)
|+|++|+..|.......+..+|++|+|+|+..... + ....+. +..... .++| +|||.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s---~---~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES---L---EYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH---H---HHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChHH---H---HHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 99999998887765555889999999999987532 1 122222 222222 2477 999999998
No 276
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.5e-11 Score=106.33 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=106.2
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
..+...+|.++|--+|||||++-.| +.+.+. ..-.|+......+.+
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykL--k~~E~v--------------------------------ttvPTiGfnVE~v~y 58 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKL--KLGEIV--------------------------------TTVPTIGFNVETVEY 58 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEee--ccCCcc--------------------------------cCCCccccceeEEEE
Confidence 3566789999999999999999877 333211 123466666667788
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 233 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~ 233 (475)
.+..|+++|..|+.++...+-......+++|+|||+++..- -...++.+..... .+.| ++++.||.|++
T Consensus 59 kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R------i~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~ 131 (181)
T KOG0070|consen 59 KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER------IEEAKEELHRMLAEPELRNAP-LLVFANKQDLP 131 (181)
T ss_pred cceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH------HHHHHHHHHHHHcCcccCCce-EEEEechhhcc
Confidence 89999999999999999999999999999999999987531 0123333322211 2456 88999999996
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
++- + ..+ +...|.-..+. .....+-+++|.+|+|+.+-
T Consensus 132 ~al-s---~~e----i~~~L~l~~l~-~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 132 GAL-S---AAE----ITNKLGLHSLR-SRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred ccC-C---HHH----HHhHhhhhccC-CCCcEEeeccccccccHHHH
Confidence 542 1 122 23333322333 13567889999999998773
No 277
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.24 E-value=1e-10 Score=110.11 Aligned_cols=153 Identities=16% Similarity=0.306 Sum_probs=99.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe-eCCeeE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TETTRF 162 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~~~~~ 162 (475)
+|.++|..+|||||+...+......- +-..-|.|++.....+. .....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~------------------------------dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR------------------------------DTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG------------------------------GGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch------------------------------hccccCCcCCceEEEEecCCCcEE
Confidence 47899999999999998874322210 11224677777766665 456689
Q ss_pred EEEeCCCCcCcHHHH-----hhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCC
Q 011910 163 TILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 163 ~liDtPGh~~f~~~~-----~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~ 235 (475)
++||+||+..|.... ..-.+.+++.|+|+|+........+. .....+..+... +++ +.|.+.|||+...
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~---~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLA---YLSDCIEALRQYSPNIK-VFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHH---HHHHHHHHHHHHSTT-E-EEEEEE-CCCS-H
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHH---HHHHHHHHHHHhCCCCe-EEEEEeecccCCH
Confidence 999999999988764 33367899999999998443322221 223333334333 565 8899999999877
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 273 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~ 273 (475)
+..++.++.+.+.+...+...++. .+.++.+|-+.
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~---~~~~~~TSI~D 161 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIE---DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T---SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc---ceEEEeccCcC
Confidence 777888888899998888877654 57889998755
No 278
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=3.5e-11 Score=101.60 Aligned_cols=152 Identities=19% Similarity=0.197 Sum_probs=102.2
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeee----eEEe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR----AHFE 156 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~----~~~~ 156 (475)
-...|+++|+.|+|||.|+.++ ..|.+..+ .|.||.+.+ ..+.
T Consensus 6 flfkivlvgnagvgktclvrrf--tqglfppg-------------------------------qgatigvdfmiktvev~ 52 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRF--TQGLFPPG-------------------------------QGATIGVDFMIKTVEVN 52 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhh--hccCCCCC-------------------------------CCceeeeeEEEEEEEEC
Confidence 3468999999999999999987 44544332 344544433 3344
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
.+..++.||||+|+++|..-+.+..+.|+..|||.|.+.-.. |+-.+.+.+.+..-...++- -|+|-||+|+ .+
T Consensus 53 gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqps---fdclpewlreie~yan~kvl-kilvgnk~d~--~d 126 (213)
T KOG0095|consen 53 GEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPS---FDCLPEWLREIEQYANNKVL-KILVGNKIDL--AD 126 (213)
T ss_pred CeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcc---hhhhHHHHHHHHHHhhcceE-EEeeccccch--hh
Confidence 456779999999999999999999999999999999876432 33222333333333233444 3678999998 32
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.+++-+++...+.... +.-|+.+||+..+|++.|+
T Consensus 127 -----rrevp~qigeefs~~q-----dmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 127 -----RREVPQQIGEEFSEAQ-----DMYFLETSAKEADNVEKLF 161 (213)
T ss_pred -----hhhhhHHHHHHHHHhh-----hhhhhhhcccchhhHHHHH
Confidence 1234444444333322 3468899999999999874
No 279
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.4e-11 Score=106.97 Aligned_cols=162 Identities=22% Similarity=0.182 Sum_probs=104.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
+....|.|+|.-+|||||++.++-.... +. .| .++ .. +--.|+.....+.+..+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~-----------~~---~~--------~l~--~~--ki~~tvgLnig~i~v~~ 68 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFS-----------KA---YG--------GLN--PS--KITPTVGLNIGTIEVCN 68 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHH-----------hh---hc--------CCC--HH--Heecccceeecceeecc
Confidence 4456789999999999999988721110 00 00 000 00 11234455555666778
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCC-ccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g-~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
..+.|||..|+......+......|+++|+||||.+. .++..- .+.+..+..-...|+| +++.+||-|+.++
T Consensus 69 ~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~---t~~~~v~~~E~leg~p-~L~lankqd~q~~--- 141 (197)
T KOG0076|consen 69 APLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESK---TAFEKVVENEKLEGAP-VLVLANKQDLQNA--- 141 (197)
T ss_pred ceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHH---HHHHHHHHHHHhcCCc-hhhhcchhhhhhh---
Confidence 8999999999998888888888899999999999883 222110 1223334444456899 7889999999443
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~ 279 (475)
....++...+.. ... .+..+.++.||||++|+|+.+
T Consensus 142 -~~~~El~~~~~~-~e~---~~~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 142 -MEAAELDGVFGL-AEL---IPRRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred -hhHHHHHHHhhh-hhh---cCCccCccccchhhhcccHHH
Confidence 222233322221 222 224578999999999999987
No 280
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.23 E-value=1.6e-10 Score=108.62 Aligned_cols=163 Identities=18% Similarity=0.098 Sum_probs=96.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--Ce
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 160 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 160 (475)
..|+++|..|+|||||+++|....-. .+....+............ ..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 54 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP-------------------------------EGYPPTIGNLDPAKTIEPYRRNI 54 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc-------------------------------ccCCCceeeeeEEEEEEeCCCEE
Confidence 78999999999999999999432211 1111122222222222222 46
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC---CceEEEEEEccCCCCCCc
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~---i~~iivviNKiD~~~~~~ 237 (475)
.+.+|||+|+.+|...+......++++++|+|...... + ...+++....+..+. .| +++|.||+|+....+
T Consensus 55 ~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~---~--~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~ 128 (219)
T COG1100 55 KLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES---S--DELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQS 128 (219)
T ss_pred EEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchh---h--hHHHHHHHHHHHHhCCCCce-EEEEecccccccchh
Confidence 68999999999999888888899999999999875211 1 123444444555443 67 999999999954322
Q ss_pred hHHHHHHHHhhhhhHhhhhcC---cccCCeeEEEeecc--cccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGY---NVKKDVQFLPISGL--MGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~---~~~~~~~iipiSa~--~g~gi~~l~~ 282 (475)
....+.........+...... .......++.+|+. ++.|+.+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~ 178 (219)
T COG1100 129 SSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFK 178 (219)
T ss_pred HHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHH
Confidence 211111110000000000000 00012348999999 9999988643
No 281
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.22 E-value=1.7e-10 Score=112.37 Aligned_cols=143 Identities=20% Similarity=0.238 Sum_probs=86.9
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 159 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 159 (475)
..+|+++|+.|+|||||+++|+...-..... ..+.........+++......+..++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~---------------------~~~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDY---------------------PPDPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccC---------------------CCCccccccCCceEEEEEEEEEEECCEE
Confidence 4689999999999999999994322110000 00000011122333444444455555
Q ss_pred eeEEEEeCCCCcCcHHH---------------------Hhh-----ccc--cCCEEEEEEecCC-CccccccCCCcchHH
Q 011910 160 TRFTILDAPGHKSYVPN---------------------MIS-----GAS--QADIGVLVISARK-GEFETGFEKGGQTRE 210 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~---------------------~~~-----~~~--~~D~~vlVVda~~-g~~e~~~~~~~~t~~ 210 (475)
.+++++||||..++..+ ... .+. .+|++++++++.. +.. ....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~-------~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLK-------PLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCC-------HHHHH
Confidence 46999999997665331 111 111 4789999999874 432 34466
Q ss_pred HHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcC
Q 011910 211 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (475)
Q Consensus 211 ~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~ 258 (475)
.+..+.. ++| +|+|+||+|+.. .......++.+...+...++
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l~----~~e~~~~k~~i~~~l~~~~i 177 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTLT----PEELKEFKQRIMEDIEEHNI 177 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcCC----HHHHHHHHHHHHHHHHHcCC
Confidence 6666654 788 899999999943 33455667777777776653
No 282
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.5e-10 Score=104.20 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=100.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
....|.++|..|||||+|+-+|.+.+.. ..-.++......+.+.+.
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~----------------------------------~TvtSiepn~a~~r~gs~ 82 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHR----------------------------------GTVTSIEPNEATYRLGSE 82 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCcc----------------------------------CeeeeeccceeeEeecCc
Confidence 3367999999999999999888443211 122345555566777778
Q ss_pred eEEEEeCCCCcCcHHHHhhccc---cCCEEEEEEecCCCccccccCCCcchHH---HHH----HHH-HcCCceEEEEEEc
Q 011910 161 RFTILDAPGHKSYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTRE---HVM----LAK-TLGVTKLLLVVNK 229 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~---~~D~~vlVVda~~g~~e~~~~~~~~t~~---~l~----~~~-~~~i~~iivviNK 229 (475)
..+++|.|||.+........+. .+-++|+|||+..-. ...+. .++ .+. ..+.+++.++.||
T Consensus 83 ~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~--------k~vrdvaefLydil~~~~~~~~~~~vLIaCNK 154 (238)
T KOG0090|consen 83 NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL--------KNVRDVAEFLYDILLDSRVKKNKPPVLIACNK 154 (238)
T ss_pred ceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc--------hhhHHHHHHHHHHHHhhccccCCCCEEEEecc
Confidence 8999999999988776666554 788999999987532 22222 221 111 1244459999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhhHhhhhc------Cc--------------------ccCCeeEEEeeccccccccc
Q 011910 230 MDDHTVNWSKERYDEIESKMTPFLKASG------YN--------------------VKKDVQFLPISGLMGLNMKT 279 (475)
Q Consensus 230 iD~~~~~~~~~~~~~i~~~l~~~l~~~~------~~--------------------~~~~~~iipiSa~~g~gi~~ 279 (475)
-|+..+.-.+.-.+.+.+++..+...-. .. ....+.|.+.|+++| ++.+
T Consensus 155 qDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~ 229 (238)
T KOG0090|consen 155 QDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQ 229 (238)
T ss_pred hhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHH
Confidence 9997776444444444445544433222 00 124567888888888 6655
No 283
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.20 E-value=5.5e-11 Score=99.03 Aligned_cols=73 Identities=53% Similarity=0.730 Sum_probs=65.1
Q ss_pred cccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 399 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 399 ~~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
.+++|+|+|.||+. .+++|.+||++++|+|+.+++|+|.+|.+++|+++|+..+.+|++|++|+.++|+|.++
T Consensus 2 ~~~~F~A~i~vl~~-~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~ 74 (108)
T cd03704 2 VVTEFEAQIAILEL-KRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETT 74 (108)
T ss_pred cccEEEEEEEEEeC-CCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeC
Confidence 46889999999652 12678999999999999999999999999999999987778999999999999999886
No 284
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.19 E-value=6.3e-11 Score=99.98 Aligned_cols=147 Identities=19% Similarity=0.209 Sum_probs=101.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
..+.++|--+||||||++.. .+|...+ .-+.|.......+...+..+
T Consensus 21 mel~lvGLq~sGKtt~Vn~i--a~g~~~e-------------------------------dmiptvGfnmrk~tkgnvti 67 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVI--ARGQYLE-------------------------------DMIPTVGFNMRKVTKGNVTI 67 (186)
T ss_pred eeEEEEeeccCCcceEEEEE--eeccchh-------------------------------hhcccccceeEEeccCceEE
Confidence 56889999999999999866 3332111 12334444445566677889
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHH----HHHHHcCCceEEEEEEccCCCCCCch
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l----~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
.++|.||+..|-..+.+..+.+++++++|||.+..- + ...++.+ ......|+| +.|.-||+|++++= +
T Consensus 68 klwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k---~---~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL-~ 139 (186)
T KOG0075|consen 68 KLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDK---L---EASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGAL-S 139 (186)
T ss_pred EEEecCCCccHHHHHHHHhhcCcEEEEEeecCCccc---c---hhhHHHHHHHhcchhhcCCc-EEEecccccCcccc-c
Confidence 999999999999999999999999999999987532 1 1233333 222334888 88899999996652 1
Q ss_pred HHHHHHHHhhhhhHhhhhcCcc--cCCeeEEEeecccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNV--KKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~--~~~~~iipiSa~~g~gi~~l 280 (475)
+ ..+ +.++|+.. ...+.-+.+|++...|++-.
T Consensus 140 ~---~~l-------i~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 140 K---IAL-------IERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred H---HHH-------HHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 1 122 22233321 24567889999999999864
No 285
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.17 E-value=9.7e-11 Score=95.81 Aligned_cols=70 Identities=37% Similarity=0.606 Sum_probs=60.1
Q ss_pred CcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 396 PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 396 ~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
|++++++|+|++.+ +++ .+|..||++++|+|+.+++|+|.+|..++| +|++. |++|++||.|.|+|.++.
T Consensus 1 ~~k~~~~f~A~v~v---l~~~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~ 71 (99)
T PF03143_consen 1 PIKAVNRFEAQVIV---LDHPKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQK 71 (99)
T ss_dssp SSEEEEEEEEEEEE---SSGSS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEE---EcCCccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeecc
Confidence 56789999999999 555 899999999999999999999999999998 66544 999999999999999864
No 286
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.17 E-value=3.4e-10 Score=91.92 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=75.5
Q ss_pred CCCCceEEEEEEEc----------cCCeEEEEEEEEeeEecCCeEEecCC-------C-----CeEEEEEEEECCcccee
Q 011910 308 PNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPN-------K-----AQVKVLAIYCDDNRVRH 365 (475)
Q Consensus 308 ~~~~~~~~v~~~~~----------~~G~v~~g~v~~G~l~~gd~v~i~p~-------~-----~~~~V~si~~~~~~v~~ 365 (475)
.++|++|.|.++|. .+|.|+.|+|.+|.|++||+|.|.|+ + ...+|.||+.++..+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 46789999999982 57999999999999999999999977 1 35689999999999999
Q ss_pred eCCCCEEEE---EeccCCccCCCceeEEecC
Q 011910 366 AGPGENLRI---RLSGIEEEDILSGFVLSSV 393 (475)
Q Consensus 366 a~aG~~v~i---~l~~~~~~~i~~G~vl~~~ 393 (475)
|.||..+++ -..++.+.|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 3447888899999999875
No 287
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.16 E-value=1e-10 Score=112.61 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=100.5
Q ss_pred ccccccccccccccccccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccC
Q 011910 58 VKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDT 137 (475)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~ 137 (475)
.+.....+...+-++......-+..-.|++||-+|+|||||++++......+-+ |.
T Consensus 135 nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIad-------------------Yp----- 190 (369)
T COG0536 135 NRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIAD-------------------YP----- 190 (369)
T ss_pred cCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccC-------------------Cc-----
Confidence 333444444455444455555566668999999999999999998433322211 11
Q ss_pred chhhhhcceEEeeeeeEEe-eCCeeEEEEeCCCCc-----------CcHHHHhhccccCCEEEEEEecCCCccccccCCC
Q 011910 138 NEEERIKGKTVEVGRAHFE-TETTRFTILDAPGHK-----------SYVPNMISGASQADIGVLVISARKGEFETGFEKG 205 (475)
Q Consensus 138 ~~~e~~~g~ti~~~~~~~~-~~~~~~~liDtPGh~-----------~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~ 205 (475)
-.|+........ .....|.+-|.||.. +|++. +..|-+.+.|||.+.-.-. +..
T Consensus 191 -------FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrH----IERt~vL~hviD~s~~~~~---dp~ 256 (369)
T COG0536 191 -------FTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRH----IERTRVLLHVIDLSPIDGR---DPI 256 (369)
T ss_pred -------cccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHH----HHhhheeEEEEecCcccCC---CHH
Confidence 122222222222 356679999999953 44544 3557889999998753210 000
Q ss_pred cchHHHHHHHHH-----cCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 206 GQTREHVMLAKT-----LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 206 ~~t~~~l~~~~~-----~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.........+.+ .+-| .+||+||||++. +++.++...+.+.... ++ ..++++||.+++|+++|
T Consensus 257 ~~~~~i~~EL~~Y~~~L~~K~-~ivv~NKiD~~~---~~e~~~~~~~~l~~~~---~~-----~~~~~ISa~t~~g~~~L 324 (369)
T COG0536 257 EDYQTIRNELEKYSPKLAEKP-RIVVLNKIDLPL---DEEELEELKKALAEAL---GW-----EVFYLISALTREGLDEL 324 (369)
T ss_pred HHHHHHHHHHHHhhHHhccCc-eEEEEeccCCCc---CHHHHHHHHHHHHHhc---CC-----CcceeeehhcccCHHHH
Confidence 011111122222 2455 789999999632 3555655555444322 21 23344999999999997
Q ss_pred ccc
Q 011910 281 VDK 283 (475)
Q Consensus 281 ~~~ 283 (475)
...
T Consensus 325 ~~~ 327 (369)
T COG0536 325 LRA 327 (369)
T ss_pred HHH
Confidence 543
No 288
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.16 E-value=1.1e-11 Score=117.79 Aligned_cols=113 Identities=16% Similarity=0.234 Sum_probs=56.2
Q ss_pred eEEEEeCCCCcCcHHHHhh------ccc--cCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 161 RFTILDAPGHKSYVPNMIS------GAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~------~~~--~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.|+||||+..+....-. .+. ..=++|+++|+..-.....|- ......+.....+++| .|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~~lP-~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRLELP-HVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHHTSE-EEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhCCCC-EEEeeeccCc
Confidence 6999999998877444333 333 345789999987532111110 1112222334457999 7889999999
Q ss_pred CCCCchHHH-----------------HHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 233 HTVNWSKER-----------------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 233 ~~~~~~~~~-----------------~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.... .+.. +......+..++...+. ..+++|+|+.+++|+.++.
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~f~pls~~~~~~~~~L~ 229 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL----VIRFIPLSSKDGEGMEELL 229 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS----S---EE-BTTTTTTHHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC----CceEEEEECCChHHHHHHH
Confidence 5421 1111 12223333334333332 2389999999999999853
No 289
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.14 E-value=5.4e-10 Score=88.41 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=68.8
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC---CeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCcee
Q 011910 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (475)
Q Consensus 314 ~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~---~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (475)
..|.++| ++.|+++.|+|.+|.|++|+.+.+.|++ ...+|+||+++++.+++|.+|+.|+|.|++++ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 4577777 4668999999999999999999999999 66799999999999999999999999999876 799999
Q ss_pred EEe
Q 011910 389 VLS 391 (475)
Q Consensus 389 vl~ 391 (475)
+|-
T Consensus 81 vi~ 83 (84)
T cd03692 81 IIE 83 (84)
T ss_pred EEE
Confidence 973
No 290
>PTZ00099 rab6; Provisional
Probab=99.13 E-value=2.1e-10 Score=104.33 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~ 234 (475)
....+.|+||||+..|...+...++.+|++|+|+|++.... |+ .....+..+.. .++| +|+|.||+|+..
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s---f~---~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~ 99 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS---FE---NTTKWIQDILNERGKDVI-IALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 34678999999999998888788899999999999987532 11 22333333322 2455 899999999832
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. .... ++...+.+.. ...++++||++|.|+.+++.
T Consensus 100 ~~--~v~~----~e~~~~~~~~------~~~~~e~SAk~g~nV~~lf~ 135 (176)
T PTZ00099 100 LR--KVTY----EEGMQKAQEY------NTMFHETSAKAGHNIKVLFK 135 (176)
T ss_pred cc--CCCH----HHHHHHHHHc------CCEEEEEECCCCCCHHHHHH
Confidence 11 0011 1122223322 34689999999999999744
No 291
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.12 E-value=1.3e-10 Score=98.09 Aligned_cols=150 Identities=17% Similarity=0.200 Sum_probs=105.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
..+|+|.+++|||+|+-++... . |..++++. .|+...+....+.-....+.
T Consensus 10 kllIigDsgVGKssLl~rF~dd--t--------------------Fs~sYitT-------iGvDfkirTv~i~G~~VkLq 60 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADD--T--------------------FSGSYITT-------IGVDFKIRTVDINGDRVKLQ 60 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhc--c--------------------cccceEEE-------eeeeEEEEEeecCCcEEEEE
Confidence 4679999999999999776221 1 11122221 34555555555555667899
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCCCchHHH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKER 241 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~~~~~~~ 241 (475)
|+||+|++.|...+....+..+++++|.|.+.|.. | ...++.+..++.. .+| =|+|-||.|.+.-
T Consensus 61 IwDtAGqErFrtitstyyrgthgv~vVYDVTn~ES---F---~Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~R------ 127 (198)
T KOG0079|consen 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---F---NNVKRWLEEIRNNCDSVP-KVLVGNKNDDPER------ 127 (198)
T ss_pred EeecccHHHHHHHHHHHccCCceEEEEEECcchhh---h---HhHHHHHHHHHhcCcccc-ceecccCCCCccc------
Confidence 99999999999888888899999999999998864 3 3667777666543 466 4689999998432
Q ss_pred HHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 242 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 242 ~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.--..++.+.+....| +..|.+||+...|++.++
T Consensus 128 rvV~t~dAr~~A~~mg------ie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 128 RVVDTEDARAFALQMG------IELFETSAKENENVEAMF 161 (198)
T ss_pred eeeehHHHHHHHHhcC------chheehhhhhcccchHHH
Confidence 1122334445555544 568999999999999864
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.11 E-value=2.3e-10 Score=113.33 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=64.2
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.+.||||+|...-. ...+..||.+++|++...|. .. ..+. .-.+.+. -|+|+||+|+....
T Consensus 147 ~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd---------~i-q~~k-~gi~E~a-DIiVVNKaDl~~~~- 210 (332)
T PRK09435 147 AGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGD---------EL-QGIK-KGIMELA-DLIVINKADGDNKT- 210 (332)
T ss_pred cCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchH---------HH-HHHH-hhhhhhh-heEEeehhcccchh-
Confidence 46789999999987222 22356899999998755442 11 1111 1122333 36899999984322
Q ss_pred hHHHHHHHHhhhhhHhhhhcCc-ccCCeeEEEeecccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~-~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
..+....++...+....-. .....|++++||++|.|++++.+
T Consensus 211 ---~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 211 ---AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred ---HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 2334445555555432100 01235899999999999999754
No 293
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.3e-09 Score=107.31 Aligned_cols=143 Identities=24% Similarity=0.261 Sum_probs=106.0
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+...||++|++|.|||||+..|+.... ..+-.+...-+|+- ....+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~t----------------------------k~ti~~i~GPiTvv------sgK~R 113 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFT----------------------------KQTIDEIRGPITVV------SGKTR 113 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHH----------------------------HhhhhccCCceEEe------eccee
Confidence 445788999999999999999853211 11111122223332 23568
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHH
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~ 240 (475)
+++|+.+| +-+..|+.-+..||.++|+||++-|. ...|.+.|.++...|.|+++-|++..|+.. +..
T Consensus 114 RiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfGf-------EMETmEFLnil~~HGmPrvlgV~ThlDlfk---~~s 180 (1077)
T COG5192 114 RITFLECP---SDLHQMIDVAKIADLVLLLIDGNFGF-------EMETMEFLNILISHGMPRVLGVVTHLDLFK---NPS 180 (1077)
T ss_pred EEEEEeCh---HHHHHHHhHHHhhheeEEEeccccCc-------eehHHHHHHHHhhcCCCceEEEEeeccccc---ChH
Confidence 89999999 45778888889999999999999883 368999999999999999999999999943 345
Q ss_pred HHHHHHhhhhhHhhhhcCcccCCeeEEEeeccc
Q 011910 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 273 (475)
Q Consensus 241 ~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~ 273 (475)
.+..+++.++..++.--|+ ...+|.+|+..
T Consensus 181 tLr~~KKrlkhRfWtEiyq---GaKlFylsgV~ 210 (1077)
T COG5192 181 TLRSIKKRLKHRFWTEIYQ---GAKLFYLSGVE 210 (1077)
T ss_pred HHHHHHHHHhhhHHHHHcC---CceEEEecccc
Confidence 6777777777666554443 56788888754
No 294
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.09 E-value=4.2e-10 Score=93.59 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=65.3
Q ss_pred cccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 399 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 399 ~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
.+.+|+|+++| +.+ .+|..||++.+|+|+..++|+|.+|.+++|.+|++..+.+|.+|++|+.+.|+|.++.
T Consensus 2 ~~~~f~A~v~~---l~~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~ 74 (107)
T cd04093 2 SSTRFEARILT---FNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELER 74 (107)
T ss_pred cccEEEEEEEE---ECCCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECC
Confidence 46899999999 454 7899999999999999999999999999999999877778999999999999998863
No 295
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.09 E-value=3.4e-09 Score=101.44 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=74.4
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
....++|+++|.+|+|||||+|+|+....... .+ ..+.|...........
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v------------------------~~------~~~~T~~~~~~~~~~~ 77 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAAT------------------------SA------FQSETLRVREVSGTVD 77 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCccc------------------------CC------CCCceEEEEEEEEEEC
Confidence 44568999999999999999999964322100 00 1234455555556677
Q ss_pred CeeEEEEeCCCCcCcH-----HH-----Hhhcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cCC---ce
Q 011910 159 TTRFTILDAPGHKSYV-----PN-----MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGV---TK 222 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~-----~~-----~~~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~i---~~ 222 (475)
+..+++|||||..+.. .. +...+ ...|++++|.......+ ....+..+..+.. +|- .+
T Consensus 78 g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~------~~~d~~llk~I~e~fG~~i~~~ 151 (249)
T cd01853 78 GFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR------DYLDLPLLRAITDSFGPSIWRN 151 (249)
T ss_pred CeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC------CHHHHHHHHHHHHHhChhhHhC
Confidence 8999999999987662 11 11112 25688888865543221 1233344444333 342 35
Q ss_pred EEEEEEccCCCCCC
Q 011910 223 LLLVVNKMDDHTVN 236 (475)
Q Consensus 223 iivviNKiD~~~~~ 236 (475)
+|+|+||+|....+
T Consensus 152 ~ivV~T~~d~~~p~ 165 (249)
T cd01853 152 AIVVLTHAASSPPD 165 (249)
T ss_pred EEEEEeCCccCCCC
Confidence 89999999985443
No 296
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.07 E-value=3.8e-10 Score=93.31 Aligned_cols=72 Identities=28% Similarity=0.493 Sum_probs=65.7
Q ss_pred cccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 399 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 399 ~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
.+.+|+|+++| +++ .+|.+||++.+|+|+.+++|+|.+|.+++|.+++...+.+|.+|++|+.+.|+|.|+.
T Consensus 2 ~~~~f~A~v~~---l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~ 74 (104)
T cd03705 2 VAESFTAQVIV---LNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQK 74 (104)
T ss_pred cccEEEEEEEE---ECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECC
Confidence 36889999999 556 8899999999999999999999999999999999877778999999999999998863
No 297
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.07 E-value=2.9e-10 Score=97.11 Aligned_cols=154 Identities=14% Similarity=0.247 Sum_probs=98.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
-...|+++|.--+|||+|+=+.+ ...+....+..++. ++.. ....++....
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~--EnkFn~kHlsTlQA------------SF~~---------------kk~n~ed~ra 62 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYV--ENKFNCKHLSTLQA------------SFQN---------------KKVNVEDCRA 62 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHH--HhhcchhhHHHHHH------------HHhh---------------ccccccccee
Confidence 34679999999999999995542 22222211111000 0100 0112222345
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCCc
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~~ 237 (475)
.++||||+|+++|-..---..+.+|+++||.|.++... |+ ..+.....++.+ .+. +++|-||+|+
T Consensus 63 ~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdS---Fq---KVKnWV~Elr~mlGnei~-l~IVGNKiDL----- 130 (218)
T KOG0088|consen 63 DLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDS---FQ---KVKNWVLELRTMLGNEIE-LLIVGNKIDL----- 130 (218)
T ss_pred eeeeeeccchHhhhccCceEEeCCCceEEEEeccchHH---HH---HHHHHHHHHHHHhCCeeE-EEEecCcccH-----
Confidence 68999999999998766666789999999999887532 32 334444444433 354 7888999998
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
++..+-..++...+....| ..++.+||+...||.+++.
T Consensus 131 -EeeR~Vt~qeAe~YAesvG------A~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 131 -EEERQVTRQEAEAYAESVG------ALYMETSAKDNVGISELFE 168 (218)
T ss_pred -HHhhhhhHHHHHHHHHhhc------hhheecccccccCHHHHHH
Confidence 2333444555666666654 4689999999999999764
No 298
>PRK13768 GTPase; Provisional
Probab=99.07 E-value=7.5e-10 Score=106.53 Aligned_cols=110 Identities=20% Similarity=0.279 Sum_probs=64.7
Q ss_pred CeeEEEEeCCCCcCcHH------HHhhcccc--CCEEEEEEecCCCccccccCCCcchHHHHHHH-----HHcCCceEEE
Q 011910 159 TTRFTILDAPGHKSYVP------NMISGASQ--ADIGVLVISARKGEFETGFEKGGQTREHVMLA-----KTLGVTKLLL 225 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~------~~~~~~~~--~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~-----~~~~i~~iiv 225 (475)
+..+.++||||+.++.. .....+.. ++++++|+|+..+... ...+....+ ...+.| +++
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~-------~d~~~~~~l~~~~~~~~~~~-~i~ 167 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTP-------SDFVSLLLLALSVQLRLGLP-QIP 167 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCH-------HHHHHHHHHHHHHHHHcCCC-EEE
Confidence 34699999999766432 22222332 8999999999876432 222222221 146888 889
Q ss_pred EEEccCCCCCCchHHHHHHHHhh---------------------hhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 226 VVNKMDDHTVNWSKERYDEIESK---------------------MTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 226 viNKiD~~~~~~~~~~~~~i~~~---------------------l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
|+||+|+...+.. +.+....+. +...++..+ ...+++++|++++.|++++.
T Consensus 168 v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~----~~~~vi~iSa~~~~gl~~L~ 239 (253)
T PRK13768 168 VLNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG----LPVRVIPVSAKTGEGFDELY 239 (253)
T ss_pred EEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC----CCCcEEEEECCCCcCHHHHH
Confidence 9999999543211 111111111 111222322 13589999999999999853
No 299
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.05 E-value=5e-10 Score=92.23 Aligned_cols=132 Identities=23% Similarity=0.296 Sum_probs=85.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+++++|.+++|||||++.|.+..-. .--|. .+++.++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-----------------------------------ykKTQ-----Ave~~d~-- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-----------------------------------YKKTQ-----AVEFNDK-- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-----------------------------------hcccc-----eeeccCc--
Confidence 47899999999999999998221100 00011 1122221
Q ss_pred EEEeCCC----CcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 163 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 163 ~liDtPG----h~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
..||||| |..+-...+..+..+|++++|-.|+++... | .-.++. .+.+++|-+|+|.|++. +
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~--f--------~p~f~~-~~~k~vIgvVTK~DLae-d-- 105 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESR--F--------PPGFLD-IGVKKVIGVVTKADLAE-D-- 105 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcccc--C--------Cccccc-ccccceEEEEecccccc-h--
Confidence 2689999 556666666777899999999999987321 1 112222 33344899999999942 1
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+.+ +..+.+|...|- -+||.+|+....|++++
T Consensus 106 -~dI----~~~~~~L~eaGa-----~~IF~~s~~d~~gv~~l 137 (148)
T COG4917 106 -ADI----SLVKRWLREAGA-----EPIFETSAVDNQGVEEL 137 (148)
T ss_pred -HhH----HHHHHHHHHcCC-----cceEEEeccCcccHHHH
Confidence 223 334446666663 38999999999999985
No 300
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2e-09 Score=90.16 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=97.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.-+..-.|+|..|+|||.|+.++..+. +..|. + ..-|+..........-..
T Consensus 9 syifkyiiigdmgvgkscllhqftekk--------------------------fmadc-p--htigvefgtriievsgqk 59 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKK--------------------------FMADC-P--HTIGVEFGTRIIEVSGQK 59 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHH--------------------------HhhcC-C--cccceecceeEEEecCcE
Confidence 345667899999999999998772211 11111 1 112222222223334455
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCce--EEEEEEccCCCCCCc
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK--LLLVVNKMDDHTVNW 237 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~--iivviNKiD~~~~~~ 237 (475)
.++.||||.|+++|..-+-+..+.+-+++.|.|.....+. ......+.-++.+-.|. ++++-||.|+ .+.
T Consensus 60 iklqiwdtagqerfravtrsyyrgaagalmvyditrrsty------nhlsswl~dar~ltnpnt~i~lignkadl--e~q 131 (215)
T KOG0097|consen 60 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY------NHLSSWLTDARNLTNPNTVIFLIGNKADL--ESQ 131 (215)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhh------hhHHHHHhhhhccCCCceEEEEecchhhh--hhc
Confidence 6789999999999999888889999999999998875321 12222233344443342 4556699999 332
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
..-.|++. +.+..+. ..-|+..||++|.|+++.
T Consensus 132 rdv~yeea----k~faeen------gl~fle~saktg~nveda 164 (215)
T KOG0097|consen 132 RDVTYEEA----KEFAEEN------GLMFLEASAKTGQNVEDA 164 (215)
T ss_pred ccCcHHHH----HHHHhhc------CeEEEEecccccCcHHHH
Confidence 22234333 3344444 457999999999999884
No 301
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.02 E-value=2.6e-09 Score=105.66 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=27.8
Q ss_pred eeEEEEeCCCC----cCc---HHHHhhccccCCEEEEEEecCC
Q 011910 160 TRFTILDAPGH----KSY---VPNMISGASQADIGVLVISARK 195 (475)
Q Consensus 160 ~~~~liDtPGh----~~f---~~~~~~~~~~~D~~vlVVda~~ 195 (475)
..+.|+||||. ..+ ....+..++.||++++|||+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 56999999997 233 2345556899999999999974
No 302
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=98.99 E-value=2.5e-09 Score=88.23 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=63.0
Q ss_pred cccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 399 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 399 ~~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
.+..|+|+|+| +.+.++.+||++++|+|+.+.+|+|.+|.+++|++|+.. .+|.+|+.|+.++|+|.++.
T Consensus 2 ~~~~f~a~i~~---l~~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~ 71 (103)
T cd04095 2 VSDQFAATLVW---MDEEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSK 71 (103)
T ss_pred ccceeeEEEEE---ecCcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCC
Confidence 46789999999 445689999999999999999999999999999998874 38999999999999999863
No 303
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.98 E-value=1.3e-09 Score=101.86 Aligned_cols=98 Identities=11% Similarity=0.135 Sum_probs=57.5
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
+..+.|++|.|..... .......+..+.|+|+..+.. ... ......+.+ .++++||+|+... .
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~--------~~~---~~~~~~~~a-~iiv~NK~Dl~~~--~ 164 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD--------KPL---KYPGMFKEA-DLIVINKADLAEA--V 164 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc--------hhh---hhHhHHhhC-CEEEEEHHHcccc--c
Confidence 4578999999932111 111124566788999987632 111 122234556 6789999999432 1
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
........+.++ +.+ ...+++++||++|.|+.+++
T Consensus 165 ~~~~~~~~~~l~----~~~----~~~~i~~~Sa~~g~gv~~l~ 199 (207)
T TIGR00073 165 GFDVEKMKADAK----KIN----PEAEIILMSLKTGEGLDEWL 199 (207)
T ss_pred hhhHHHHHHHHH----HhC----CCCCEEEEECCCCCCHHHHH
Confidence 122233333332 221 24689999999999999853
No 304
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.97 E-value=2.2e-09 Score=99.04 Aligned_cols=152 Identities=23% Similarity=0.209 Sum_probs=96.7
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEee---eeeEEeeC
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV---GRAHFETE 158 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~---~~~~~~~~ 158 (475)
..+|+++|..|+|||+|+-+++...-. . . .-.|+.. ....+...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~--~-------------------------~------y~ptied~y~k~~~v~~~ 49 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV--E-------------------------D------YDPTIEDSYRKELTVDGE 49 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc--c-------------------------c------cCCCccccceEEEEECCE
Confidence 468999999999999999877432211 0 0 0111211 11222233
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cCCceEEEEEEccCCCCCCc
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~i~~iivviNKiD~~~~~~ 237 (475)
...+.|+||+|...|....-..++.+|+.++|.+.+.-.. |+...+.++.+...+. ..+| +|+|.||+|+...
T Consensus 50 ~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~S---F~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~-- 123 (196)
T KOG0395|consen 50 VCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSS---FEEAKQLREQILRVKGRDDVP-IILVGNKCDLERE-- 123 (196)
T ss_pred EEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHH---HHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhc--
Confidence 4567899999999999999999999999999999887532 3222234444422222 2467 9999999999431
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. -..++-..+...+ .++++.+||+...|+++++.
T Consensus 124 R~----V~~eeg~~la~~~------~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 124 RQ----VSEEEGKALARSW------GCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred cc----cCHHHHHHHHHhc------CCcEEEeeccCCcCHHHHHH
Confidence 11 1112222223332 45799999999999998643
No 305
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.97 E-value=7.3e-09 Score=102.28 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=60.2
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.+.|+||||... .....+..+|.++++.+...+ .....+.. ...+.| .++|+||+|+....
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~----------~el~~~~~-~l~~~~-~ivv~NK~Dl~~~~- 188 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG----------DDLQGIKA-GLMEIA-DIYVVNKADGEGAT- 188 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc----------HHHHHHHH-HHhhhc-cEEEEEcccccchh-
Confidence 578899999999652 223346678999888665433 12122221 124667 67899999995332
Q ss_pred hHHHHHHHHhh----hhhHhhh-hcCcccCCeeEEEeecccccccccccc
Q 011910 238 SKERYDEIESK----MTPFLKA-SGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~----l~~~l~~-~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ...+... +..+... .++ ..+++++||++|.|+.++..
T Consensus 189 -~--~~~~~~~~~~~l~~l~~~~~~~----~~~v~~iSA~~g~Gi~~L~~ 231 (300)
T TIGR00750 189 -N--VTIARLMLALALEEIRRREDGW----RPPVLTTSAVEGRGIDELWD 231 (300)
T ss_pred -H--HHHHHHHHHHHHhhccccccCC----CCCEEEEEccCCCCHHHHHH
Confidence 1 1111111 1111111 111 24799999999999998754
No 306
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=4.8e-09 Score=88.02 Aligned_cols=149 Identities=18% Similarity=0.235 Sum_probs=97.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+..+|..+|-.+|||||++-.| ..+.... .-.|+........+.+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKL--kl~~~~~--------------------------------~ipTvGFnvetVtykN~ 61 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKL--KLGQSVT--------------------------------TIPTVGFNVETVTYKNV 61 (180)
T ss_pred ccceEEEEecccCCceehhhHH--hcCCCcc--------------------------------cccccceeEEEEEeeee
Confidence 3467899999999999999887 2222111 11222333344567889
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHH----HHHHcCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM----LAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~----~~~~~~i~~iivviNKiD~~~~~ 236 (475)
.|+++|..|+.+..+.+.......-++|+|+|+....- + ...++.+. .-....++ +.|..||-|++.+-
T Consensus 62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr---~---eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---EEARNELHRIINDREMRDAI-ILILANKQDLPDAM 134 (180)
T ss_pred EEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhh---H---HHHHHHHHHHhCCHhhhcce-EEEEecCccccccc
Confidence 99999999999999999999999999999999765421 0 12222221 11223456 78888999996553
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~ 279 (475)
..+++...++ |.. .. .....+.|+||.+|+|+.+
T Consensus 135 ----~pqei~d~le--Le~--~r-~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 135 ----KPQEIQDKLE--LER--IR-DRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred ----CHHHHHHHhc--ccc--cc-CCccEeeccccccchhHHH
Confidence 2334433221 111 11 2355788999999999876
No 307
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.9e-09 Score=89.79 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=99.0
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+..++.++|--|+||||++-+| +.|.+.. .-.|+..+...+.+.+-
T Consensus 17 ~e~rililgldGaGkttIlyrl--qvgevvt--------------------------------tkPtigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRL--QVGEVVT--------------------------------TKPTIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEc--ccCcccc--------------------------------cCCCCCcCccccccccc
Confidence 4568899999999999998766 3332211 22345555556677888
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcch-HHHHHHHH--HcCCceEEEEEEccCCCCCCc
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAK--TLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t-~~~l~~~~--~~~i~~iivviNKiD~~~~~~ 237 (475)
++.++|..|......-+-+.....|.+|+|||..+-.- + +.. .+....+. .+.-..++|+.||+|...+
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dr---i---s~a~~el~~mL~E~eLq~a~llv~anKqD~~~~-- 134 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDR---I---SIAGVELYSMLQEEELQHAKLLVFANKQDYSGA-- 134 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchhh---h---hhhHHHHHHHhccHhhcCceEEEEeccccchhh--
Confidence 99999999999999999899999999999999876431 0 111 12222221 1222348899999998432
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
...+++...|.-..++ +..+.||..||.+|+|+++.
T Consensus 135 ------~t~~E~~~~L~l~~Lk-~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 135 ------LTRSEVLKMLGLQKLK-DRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred ------hhHHHHHHHhChHHHh-hheeEEEeeccccccCCcHH
Confidence 2222222222111111 23478999999999999985
No 308
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.89 E-value=7.6e-09 Score=103.27 Aligned_cols=149 Identities=19% Similarity=0.279 Sum_probs=81.3
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcce---EEeeeeeEE
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK---TVEVGRAHF 155 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~---ti~~~~~~~ 155 (475)
....++|||+|.+|+|||||+|+|.+..+. +.+. -..|+ |... ..+
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~-d~~a----------------------------A~tGv~etT~~~--~~Y 80 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHE-DEGA----------------------------APTGVVETTMEP--TPY 80 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TT-STTS------------------------------SSSHSCCTS---EEE
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCC-CcCc----------------------------CCCCCCcCCCCC--eeC
Confidence 345679999999999999999999432211 1100 01122 1222 223
Q ss_pred eeCC-eeEEEEeCCCCc--Cc-----HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEE
Q 011910 156 ETET-TRFTILDAPGHK--SY-----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 227 (475)
Q Consensus 156 ~~~~-~~~~liDtPGh~--~f-----~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivvi 227 (475)
.... .++.+||.||.. +| +..+ .+...|..|+|.+..-. ......+..+..+|.+ +.+|-
T Consensus 81 ~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~rf~---------~ndv~La~~i~~~gK~-fyfVR 148 (376)
T PF05049_consen 81 PHPKFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSERFT---------ENDVQLAKEIQRMGKK-FYFVR 148 (376)
T ss_dssp E-SS-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS-----------HHHHHHHHHHHHTT-E-EEEEE
T ss_pred CCCCCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCCCc---------hhhHHHHHHHHHcCCc-EEEEE
Confidence 3333 469999999962 33 3332 46788987776654322 2445556667778888 99999
Q ss_pred EccCCC--------CCCchH-HHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccc
Q 011910 228 NKMDDH--------TVNWSK-ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 273 (475)
Q Consensus 228 NKiD~~--------~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~ 273 (475)
||+|.. +..+++ ..++++.+.....|++.|.. ..++|-+|+..
T Consensus 149 TKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~---~P~VFLVS~~d 200 (376)
T PF05049_consen 149 TKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS---EPQVFLVSSFD 200 (376)
T ss_dssp --HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S---S--EEEB-TTT
T ss_pred ecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC---cCceEEEeCCC
Confidence 999951 112332 33677777777788877765 56899999864
No 309
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.89 E-value=9.3e-09 Score=79.32 Aligned_cols=68 Identities=32% Similarity=0.470 Sum_probs=60.9
Q ss_pred CeEEEEEEEEeeEecCCeEEecC--CCCe---EEEEEEEECCccceeeCCCCEEEEEeccCCccC-CCceeEEe
Q 011910 324 GTVVMGKVESGSVREGDSLLVMP--NKAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEED-ILSGFVLS 391 (475)
Q Consensus 324 G~v~~g~v~~G~l~~gd~v~i~p--~~~~---~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~-i~~G~vl~ 391 (475)
|++++|||++|+|++||+|.+.| .... .+|++|+.++.....+.+|+.+++.+......+ +++||+|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999977 3234 899999999999999999999999888777788 89999986
No 310
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=4.2e-09 Score=90.15 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=76.0
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~ 236 (475)
..+.+|||+|+++|...+.+..+.|-+.+|+.|.+..- +| -.++..+.+++.. .-|.+|++-||.|+ .+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eq---SF---LnvrnWlSQL~~hAYcE~PDivlcGNK~DL--~~ 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQ---SF---LNVRNWLSQLQTHAYCENPDIVLCGNKADL--ED 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchH---HH---HHHHHHHHHHHHhhccCCCCEEEEcCccch--hh
Confidence 34889999999999999989899999999999976532 12 2456666665543 45779999999999 32
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
...-...+...+..+.| +|+|.+||-+|.|+++..+
T Consensus 139 ----~R~Vs~~qa~~La~kyg------lPYfETSA~tg~Nv~kave 174 (219)
T KOG0081|consen 139 ----QRVVSEDQAAALADKYG------LPYFETSACTGTNVEKAVE 174 (219)
T ss_pred ----hhhhhHHHHHHHHHHhC------CCeeeeccccCcCHHHHHH
Confidence 11122334444555554 5899999999999988543
No 311
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.3e-08 Score=88.04 Aligned_cols=157 Identities=19% Similarity=0.163 Sum_probs=99.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
++.-.+.++|--|+|||||+.+|-. ++. + ..-.|...+...+...+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKd------Drl----------------------~------qhvPTlHPTSE~l~Ig~ 63 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKD------DRL----------------------G------QHVPTLHPTSEELSIGG 63 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcc------ccc----------------------c------ccCCCcCCChHHheecC
Confidence 4456789999999999999998811 110 0 01234444445566788
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..++-+|..||..-..-+...+..+|++|++|||.+-.- -...++++..+.. ..+| +++..||+|++.+
T Consensus 64 m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er------~~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 64 MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQER------FAESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHH------hHHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 999999999998777777777889999999999976431 1355666655443 3688 8889999999765
Q ss_pred CchHHHHHHHHhhhhhHhhhhcC-c----ccCCeeEEEeeccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGY-N----VKKDVQFLPISGLMGLNMKT 279 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~-~----~~~~~~iipiSa~~g~gi~~ 279 (475)
- +++.++.... +.......|- . ....+.++.+|...+.|..+
T Consensus 137 ~-se~~l~~~l~-l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e 183 (193)
T KOG0077|consen 137 A-SEDELRFHLG-LSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGE 183 (193)
T ss_pred c-cHHHHHHHHH-HHHHhcccccccccCCCCCeEEEEEEEEEccCccce
Confidence 3 4433333222 1112211110 0 01234567777777666443
No 312
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.84 E-value=4.7e-09 Score=90.35 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=95.8
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccch---HHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDD---RTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~---~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..++.++|..-+|||+|+..+ ..|.... .++. --.++++ .|.+.|.
T Consensus 8 qfrlivigdstvgkssll~~f--t~gkfaelsdptvg------------vdffarl-----ie~~pg~------------ 56 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYF--TEGKFAELSDPTVG------------VDFFARL-----IELRPGY------------ 56 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHH--hcCcccccCCCccc------------hHHHHHH-----HhcCCCc------------
Confidence 357889999999999999876 3332211 0000 0001111 1111111
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCc---eEEEEEEccCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVT---KLLLVVNKMDDHT 234 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~---~iivviNKiD~~~ 234 (475)
..++.+|||+|+++|..-+-+..+++=++++|.|.+.... |+ .....+..+. ..+-| -|.+|-.|.|+.
T Consensus 57 riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~s---fe---hv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~- 129 (213)
T KOG0091|consen 57 RIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRES---FE---HVENWVKEAAMATQGPDKVVFLLVGHKSDLQ- 129 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhh---HH---HHHHHHHHHHHhcCCCCeeEEEEeccccchh-
Confidence 2458999999999999999999999999999999876531 11 2222222222 22322 256777999993
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ..+-..++.+.+.+.+|+ .||.+||++|.|+++-+.
T Consensus 130 -S----qRqVt~EEaEklAa~hgM------~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 130 -S----QRQVTAEEAEKLAASHGM------AFVETSAKNGCNVEEAFD 166 (213)
T ss_pred -h----hccccHHHHHHHHHhcCc------eEEEecccCCCcHHHHHH
Confidence 2 223344556667777765 699999999999998543
No 313
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.84 E-value=5.2e-08 Score=97.13 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=77.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcc--cchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcc---eEEeeee--
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ--VDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG---KTVEVGR-- 152 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~--~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g---~ti~~~~-- 152 (475)
...+.|+++|++++|||||+++|....-. +.+.. .++ +..|..+ ....| +|.+..+
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~----~k~------------Ra~DELp-qs~~GktItTTePkfvP 77 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEY----DKE------------RAQDELP-QSAAGKTIMTTEPKFVP 77 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchh----HHh------------HHHhccC-cCCCCCCcccCCCcccc
Confidence 45578999999999999999999665321 11111 010 0111111 01234 3333322
Q ss_pred -eEEee-----CCeeEEEEeCCCCcCc-------------------------HHH----Hhhccc-cCCEEEEEE-ecCC
Q 011910 153 -AHFET-----ETTRFTILDAPGHKSY-------------------------VPN----MISGAS-QADIGVLVI-SARK 195 (475)
Q Consensus 153 -~~~~~-----~~~~~~liDtPGh~~f-------------------------~~~----~~~~~~-~~D~~vlVV-da~~ 195 (475)
..++. -...+.|+||+|..+= ... +...+. .+|.+|+|. |++-
T Consensus 78 ~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi 157 (492)
T TIGR02836 78 NEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTI 157 (492)
T ss_pred CcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCc
Confidence 11111 2367999999995321 111 222344 799999999 8752
Q ss_pred Cccc-cccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 196 GEFE-TGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 196 g~~e-~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
+..+ .++ ...-.+.+..++..+.| ||+++||.|-
T Consensus 158 ~dI~Re~y--~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 158 TDIPREDY--VEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred cccccccc--hHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 2111 011 13466788889999999 9999999993
No 314
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.83 E-value=3.5e-08 Score=100.60 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.2
Q ss_pred eeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecC
Q 011910 160 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISAR 194 (475)
Q Consensus 160 ~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~ 194 (475)
..+.|+||||... .....+..++.||++++|||+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4589999999532 2335556688999999999997
No 315
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.82 E-value=1.1e-08 Score=91.86 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=44.8
Q ss_pred CCeeEEEEeCCCCcCcH----HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSYV----PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~----~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKi 230 (475)
....+.|+||||..+.. ..+...+..+|++|+|+++..... ....+.+........+.+|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~-------~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT-------ESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG-------GHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc-------hHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 34569999999975421 234445689999999999998754 2344444444444555589999995
No 316
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.81 E-value=1e-08 Score=99.09 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=87.9
Q ss_pred ccccccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcc---e
Q 011910 70 ESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG---K 146 (475)
Q Consensus 70 ~~~~~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g---~ 146 (475)
+...+..+..+....|.|+|.+|||||||+.+|+.....-..-. ...|. .....|... -+..| +
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~--------VI~gD----~~t~~Da~r-I~~~g~pvv 158 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCA--------VIEGD----QQTVNDAAR-IRATGTPAI 158 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEE--------EECCC----cCcHHHHHH-HHhcCCcEE
Confidence 33344555677888999999999999999999876532100000 00000 000000000 00011 1
Q ss_pred EEeeee-------------eEEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHH
Q 011910 147 TVEVGR-------------AHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 213 (475)
Q Consensus 147 ti~~~~-------------~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~ 213 (475)
.+..+. ..+......+.||++-|.--.-... -+ ..+.-+.|+++.+|. .+.. +
T Consensus 159 qi~tG~~Chl~a~mv~~Al~~L~~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~--------dkpl---K 224 (290)
T PRK10463 159 QVNTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGE--------DKPL---K 224 (290)
T ss_pred EecCCCCCcCcHHHHHHHHHHHhhcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECcccc--------ccch---h
Confidence 111100 0112234467888988841111000 01 123456888888773 1111 1
Q ss_pred HHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 214 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 214 ~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+-..+... -++++||+|+ .++....++.+.+.++. ++ ...+++++||++|+|++++
T Consensus 225 yp~~f~~A-DIVVLNKiDL--l~~~~~dle~~~~~lr~----ln----p~a~I~~vSA~tGeGld~L 280 (290)
T PRK10463 225 YPHMFAAA-SLMLLNKVDL--LPYLNFDVEKCIACARE----VN----PEIEIILISATSGEGMDQW 280 (290)
T ss_pred ccchhhcC-cEEEEEhHHc--CcccHHHHHHHHHHHHh----hC----CCCcEEEEECCCCCCHHHH
Confidence 12223445 4689999999 43323334444444433 21 2468999999999999985
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.81 E-value=1.6e-08 Score=95.90 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=47.8
Q ss_pred eeEEEEeCCCCcCc------------HH-HHhhccc-cCCEEEEEEecCCCccccccCCCcch-HHHHHHHHHcCCceEE
Q 011910 160 TRFTILDAPGHKSY------------VP-NMISGAS-QADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTLGVTKLL 224 (475)
Q Consensus 160 ~~~~liDtPGh~~f------------~~-~~~~~~~-~~D~~vlVVda~~g~~e~~~~~~~~t-~~~l~~~~~~~i~~ii 224 (475)
..++|+||||.... +. .+..++. ..+.+++|+||..+.. .+. .+.++.+...+.+ .|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~-------~~d~l~ia~~ld~~~~r-ti 196 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-------NSDALKLAKEVDPQGER-TI 196 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC-------chhHHHHHHHHHHcCCc-EE
Confidence 56999999998521 11 2333455 4569999999988753 233 5666777777887 88
Q ss_pred EEEEccCCCC
Q 011910 225 LVVNKMDDHT 234 (475)
Q Consensus 225 vviNKiD~~~ 234 (475)
+|+||+|...
T Consensus 197 ~ViTK~D~~~ 206 (240)
T smart00053 197 GVITKLDLMD 206 (240)
T ss_pred EEEECCCCCC
Confidence 9999999953
No 318
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.81 E-value=4.8e-08 Score=76.00 Aligned_cols=78 Identities=33% Similarity=0.454 Sum_probs=67.9
Q ss_pred ceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecC--CCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCce
Q 011910 312 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMP--NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 387 (475)
Q Consensus 312 ~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p--~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (475)
+++.|.++++ ..|.++.|+|.+|+|++||.+.+.| .....+|++|+.++.+++.+.||+.+++.+.... ++++|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCCC
Confidence 3567788774 4789999999999999999999999 7778899999999999999999999999876433 78999
Q ss_pred eEEe
Q 011910 388 FVLS 391 (475)
Q Consensus 388 ~vl~ 391 (475)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9986
No 319
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.81 E-value=6.5e-08 Score=90.65 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=84.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|.++|..|+||||++|.|+.....-. .-.....|...........++.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~-----------------------------~~~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS-----------------------------GSSAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------------------------------TTTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee-----------------------------ccccCCcccccceeeeeecceEE
Confidence 5899999999999999999964322100 00112344444455567889999
Q ss_pred EEEeCCCCcCc-------HHHHhhc----cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cC---CceEEEEE
Q 011910 163 TILDAPGHKSY-------VPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLLLVV 227 (475)
Q Consensus 163 ~liDtPGh~~f-------~~~~~~~----~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~---i~~iivvi 227 (475)
++|||||..+- ..++... ....+++|||+... ..+ ...+..+..+.. +| .+++||++
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t-------~~~~~~l~~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFT-------EEDREVLELLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-S-------HHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cch-------HHHHHHHHHHHHHccHHHHhHhhHHh
Confidence 99999996432 2223222 34689999999987 322 344555544443 34 35789999
Q ss_pred EccCCCCCCchHHHHHHHH-hhhhhHhhhhcCcccCCeeEEEeecc
Q 011910 228 NKMDDHTVNWSKERYDEIE-SKMTPFLKASGYNVKKDVQFLPISGL 272 (475)
Q Consensus 228 NKiD~~~~~~~~~~~~~i~-~~l~~~l~~~~~~~~~~~~iipiSa~ 272 (475)
|..|....+-.++.++... ..++.+++.++- +++-.+..
T Consensus 124 T~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~------R~~~f~n~ 163 (212)
T PF04548_consen 124 THADELEDDSLEDYLKKESNEALQELIEKCGG------RYHVFNNK 163 (212)
T ss_dssp EEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT------CEEECCTT
T ss_pred hhccccccccHHHHHhccCchhHhHHhhhcCC------EEEEEecc
Confidence 9999754332222222222 346677777652 45555544
No 320
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.80 E-value=2.5e-08 Score=83.83 Aligned_cols=151 Identities=21% Similarity=0.237 Sum_probs=97.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.++|.++|--++||||++.+|.... ....-+..|..+ ..+.+.+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED------------------------------~~hltpT~GFn~----k~v~~~g 60 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSED------------------------------PRHLTPTNGFNT----KKVEYDG 60 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCC------------------------------hhhccccCCcce----EEEeecC
Confidence 456889999999999999999982110 001111233333 3344444
Q ss_pred -eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHH-HHH---HHcCCceEEEEEEccCCCC
Q 011910 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLA---KTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 -~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l-~~~---~~~~i~~iivviNKiD~~~ 234 (475)
.+++++|..|+.....-+.......|+.|+|||+++.-+ |+ .+.+++ .++ +...+| +.+..||-|+..
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr---fe---E~~~el~ELleeeKl~~vp-vlIfankQdllt 133 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR---FE---EISEELVELLEEEKLAEVP-VLIFANKQDLLT 133 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh---HH---HHHHHHHHHhhhhhhhccc-eeehhhhhHHHh
Confidence 889999999999888888888899999999999776532 11 233333 222 223577 778889999954
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+. ..+++...+... ++. ...+.+-.+||++++|+...
T Consensus 134 aa----~~eeia~klnl~----~lr-dRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 134 AA----KVEEIALKLNLA----GLR-DRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred hc----chHHHHHhcchh----hhh-hceEEeeeCccccccCccCc
Confidence 32 223333222211 111 23567888999999998874
No 321
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.79 E-value=2.8e-08 Score=92.08 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=57.2
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceE--EEEEEccCCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKL--LLVVNKMDDHTVN 236 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~i--ivviNKiD~~~~~ 236 (475)
+..+.+|+|.|-. ...... -..+|.+|+|+|+.++.. ..... ..++. + ++++||+|+.+.
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~--------~~~~~-----~~qi~-~ad~~~~~k~d~~~~- 152 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDK--------IPRKG-----GPGIT-RSDLLVINKIDLAPM- 152 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhh--------hhhhh-----HhHhh-hccEEEEEhhhcccc-
Confidence 4567899999931 111111 123688999999998742 11111 11222 3 689999999531
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.....+.+.+.++.+ + ...+++++||++|+|+++++
T Consensus 153 -~~~~~~~~~~~~~~~----~----~~~~i~~~Sa~~g~gi~el~ 188 (199)
T TIGR00101 153 -VGADLGVMERDAKKM----R----GEKPFIFTNLKTKEGLDTVI 188 (199)
T ss_pred -ccccHHHHHHHHHHh----C----CCCCEEEEECCCCCCHHHHH
Confidence 122333444444332 1 24689999999999999864
No 322
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.78 E-value=8.8e-08 Score=93.29 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=68.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|.+|+|||||+|+|+........ .+ .+.+...........+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs------------------------~f------~s~t~~~~~~~~~~~G 85 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVS------------------------AF------QSEGLRPMMVSRTRAG 85 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccccc------------------------CC------CCcceeEEEEEEEECC
Confidence 45679999999999999999999643221100 00 0111111122234578
Q ss_pred eeEEEEeCCCCcCc--HHHH-hhcc------ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cC---CceEEEE
Q 011910 160 TRFTILDAPGHKSY--VPNM-ISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLLLV 226 (475)
Q Consensus 160 ~~~~liDtPGh~~f--~~~~-~~~~------~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~---i~~iivv 226 (475)
+.+++|||||..+. .... ...+ ..+|++|+|......-+ ....+..+..+.. +| ..++||+
T Consensus 86 ~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~------~~~DkqlLk~Iqe~FG~~iw~~~IVV 159 (313)
T TIGR00991 86 FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRV------DTLDGQVIRAITDSFGKDIWRKSLVV 159 (313)
T ss_pred eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccC------CHHHHHHHHHHHHHhhhhhhccEEEE
Confidence 99999999998754 1111 1111 25899999955432211 1223334433332 23 2458999
Q ss_pred EEccCCC
Q 011910 227 VNKMDDH 233 (475)
Q Consensus 227 iNKiD~~ 233 (475)
+|+.|..
T Consensus 160 fTh~d~~ 166 (313)
T TIGR00991 160 LTHAQFS 166 (313)
T ss_pred EECCccC
Confidence 9999974
No 323
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.77 E-value=1.8e-08 Score=96.32 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=96.0
Q ss_pred cCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 77 ~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
......+.|+++|..|+|||||+++|- ......+.. --.|.+.+.....
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT-~Aal~p~dr------------------------------LFATLDpT~h~a~ 221 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALT-KAALYPNDR------------------------------LFATLDPTLHSAH 221 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHH-hhhcCccch------------------------------hheeccchhhhcc
Confidence 334566789999999999999999994 211111111 2234444444443
Q ss_pred eC-CeeEEEEeCCCCcCcHHHH--------hhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCc------
Q 011910 157 TE-TTRFTILDAPGHKSYVPNM--------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT------ 221 (475)
Q Consensus 157 ~~-~~~~~liDtPGh~~f~~~~--------~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~------ 221 (475)
.+ +..+.+.||-|+..-++.. +.-...+|.+|-|+|.+++..| .|-...+..++.+|+|
T Consensus 222 Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae------~q~e~Vl~vL~~igv~~~pkl~ 295 (410)
T KOG0410|consen 222 LPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE------EQRETVLHVLNQIGVPSEPKLQ 295 (410)
T ss_pred CCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH------HHHHHHHHHHHhcCCCcHHHHh
Confidence 43 5668899999976543332 2234579999999999998754 5677778888888886
Q ss_pred eEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 222 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 222 ~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.+|=|=||+|.... +.+ ......+++|+++|+|+.++.
T Consensus 296 ~mieVdnkiD~e~~-~~e---------------------~E~n~~v~isaltgdgl~el~ 333 (410)
T KOG0410|consen 296 NMIEVDNKIDYEED-EVE---------------------EEKNLDVGISALTGDGLEELL 333 (410)
T ss_pred HHHhhccccccccc-cCc---------------------cccCCccccccccCccHHHHH
Confidence 34555688886321 110 001127899999999999853
No 324
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.73 E-value=3e-08 Score=93.29 Aligned_cols=103 Identities=19% Similarity=0.158 Sum_probs=58.4
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.+.|+.|-|--.- -+.-...+|..++|+-+..|.- .+..-.-.+. +.. |+||||.|++.+
T Consensus 120 aG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~-----iQ~~KaGimE------iaD-i~vVNKaD~~gA-- 182 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDE-----IQAIKAGIME------IAD-IFVVNKADRPGA-- 182 (266)
T ss_dssp TT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCC-----CCTB-TTHHH------H-S-EEEEE--SHHHH--
T ss_pred cCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccH-----HHHHhhhhhh------hcc-EEEEeCCChHHH--
Confidence 4677999999985322 1223568999999999888752 1111111222 233 579999998443
Q ss_pred hHHHHHHHHhhhhhHhhhhcC-cccCCeeEEEeecccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGY-NVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~-~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+....+++..+....- ......|++.+||.+|.|+.+|.+
T Consensus 183 -----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~ 223 (266)
T PF03308_consen 183 -----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWE 223 (266)
T ss_dssp -----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHH
T ss_pred -----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 2334444444432211 111246999999999999999744
No 325
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=98.72 E-value=5.7e-08 Score=79.84 Aligned_cols=70 Identities=31% Similarity=0.479 Sum_probs=61.1
Q ss_pred cccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEecc
Q 011910 399 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVCC 473 (475)
Q Consensus 399 ~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~~ 473 (475)
++++|+|++.+ +.+ .+|+.||++.+|+|+.+++|+|..|.+++|.++ ....+|++|++|+.+.|+|.++.
T Consensus 2 ~~~~f~a~i~~---l~~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~ 72 (102)
T cd01513 2 AVDKFVAEIYV---LDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQK 72 (102)
T ss_pred cccEEEEEEEE---ECCCcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECC
Confidence 46899999998 444 789999999999999999999999999999874 33567899999999999998764
No 326
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.70 E-value=4e-08 Score=89.69 Aligned_cols=152 Identities=16% Similarity=0.229 Sum_probs=104.5
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-ee
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-TR 161 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~ 161 (475)
+.|.++|..|||||+|=......... . +-+..|-||++.+.+...-+ -.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a--------------------------~----D~~rlg~tidveHsh~RflGnl~ 54 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIA--------------------------R----DTRRLGATIDVEHSHVRFLGNLV 54 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhh--------------------------h----hhhccCCcceeeehhhhhhhhhe
Confidence 57899999999999987765221111 1 12336788888777765544 77
Q ss_pred EEEEeCCCCcCcHHHHhhc-----cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-CCceEEEEEEccCCCCC
Q 011910 162 FTILDAPGHKSYVPNMISG-----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~-----~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~-~i~~iivviNKiD~~~~ 235 (475)
++++|+.|++.|+.+..+. .+..++.+.|.|+....++++|. .....+..+... -..++++.+.|||+...
T Consensus 55 LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 55 LNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 9999999999999888774 56889999999999888776654 333333333322 22247889999999877
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 273 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~ 273 (475)
+-.+..|+.-...+..+-..+ .+..+|+|-+.
T Consensus 132 d~r~~if~~r~~~l~~~s~~~------~~~~f~TsiwD 163 (295)
T KOG3886|consen 132 DARELIFQRRKEDLRRLSRPL------ECKCFPTSIWD 163 (295)
T ss_pred chHHHHHHHHHHHHHHhcccc------cccccccchhh
Confidence 767777776666555433322 24577877654
No 327
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.64 E-value=1.6e-07 Score=89.58 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=60.4
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.+.||.|-|--.-- ..-...+|..++|.=+..|.- -|.. ..-.+.+-. |+||||+|+..++
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~-------~Q~i----K~GimEiaD-i~vINKaD~~~A~- 205 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDD-------LQGI----KAGIMEIAD-IIVINKADRKGAE- 205 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcH-------HHHH----Hhhhhhhhh-eeeEeccChhhHH-
Confidence 35668888888853211 122457899988887766631 1211 112233442 5799999985442
Q ss_pred hHHHHHHHHhhhhhH---hhhhcCcccCCeeEEEeecccccccccccc
Q 011910 238 SKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~---l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
..+.++...+... -...+ ...|++.+||.+|+|+.+|.+
T Consensus 206 --~a~r~l~~al~~~~~~~~~~~----W~ppv~~t~A~~g~Gi~~L~~ 247 (323)
T COG1703 206 --KAARELRSALDLLREVWRENG----WRPPVVTTSALEGEGIDELWD 247 (323)
T ss_pred --HHHHHHHHHHHhhcccccccC----CCCceeEeeeccCCCHHHHHH
Confidence 2233333333222 22223 356999999999999999754
No 328
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.64 E-value=6.6e-09 Score=86.30 Aligned_cols=103 Identities=18% Similarity=0.271 Sum_probs=70.6
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~ 234 (475)
...++.+|||.|+++|..-+.+..+.+|..+|+.|..... +|+ ..+..+...... .+. +.++-||+|+..
T Consensus 45 ~kvklqiwdtagqerfrsvt~ayyrda~allllydianka---sfd---n~~~wlsei~ey~k~~v~-l~llgnk~d~a~ 117 (192)
T KOG0083|consen 45 KKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKA---SFD---NCQAWLSEIHEYAKEAVA-LMLLGNKCDLAH 117 (192)
T ss_pred cEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccch---hHH---HHHHHHHHHHHHHHhhHh-Hhhhccccccch
Confidence 4567899999999999999999999999999999976542 232 344444444333 354 678899999932
Q ss_pred CCchHHHHHHHHh-hhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 235 VNWSKERYDEIES-KMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 235 ~~~~~~~~~~i~~-~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
. + .+.. +=+.+.+.. .+||..+||++|-|++-.
T Consensus 118 e-----r--~v~~ddg~kla~~y------~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 118 E-----R--AVKRDDGEKLAEAY------GIPFMETSAKTGFNVDLA 151 (192)
T ss_pred h-----h--ccccchHHHHHHHH------CCCceeccccccccHhHH
Confidence 1 1 1111 112233333 468999999999999863
No 329
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.60 E-value=2.9e-07 Score=82.65 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=56.8
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCC-EEEEEEecCCCccccccCCCcchHH-HHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTRE-HVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D-~~vlVVda~~g~~e~~~~~~~~t~~-~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
..+.||...| +..... .....| ..|+|||+.+|.- .-+. +-.+ .. . =++||||.|+ +.+
T Consensus 97 ~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~--------~P~K~gP~i---~~-a-DllVInK~DL--a~~ 157 (202)
T COG0378 97 LDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGED--------IPRKGGPGI---FK-A-DLLVINKTDL--APY 157 (202)
T ss_pred CCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCC--------CcccCCCce---eE-e-eEEEEehHHh--HHH
Confidence 4688888888 332211 123455 8899999999852 1111 1000 01 1 2579999999 443
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
-...++...+.+++. ..+.+|+.+|+++|+|++++
T Consensus 158 v~~dlevm~~da~~~--------np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 158 VGADLEVMARDAKEV--------NPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred hCccHHHHHHHHHHh--------CCCCCEEEEeCCCCcCHHHH
Confidence 333334444433322 24679999999999999874
No 330
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.58 E-value=6.2e-07 Score=87.40 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=79.9
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 159 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 159 (475)
..+|.++|..|+|||||++.|+.......... .+.......+...+......+...+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS---------------------IPPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc---------------------ccccccccccccceeeEEEEeccCCcc
Confidence 46899999999999999999965322111100 0000011223344444444444443
Q ss_pred eeEEEEeCCCCcCcHHH---------------------Hhhc----c--ccCCEEEEEEecC-CCccccccCCCcchHHH
Q 011910 160 TRFTILDAPGHKSYVPN---------------------MISG----A--SQADIGVLVISAR-KGEFETGFEKGGQTREH 211 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~---------------------~~~~----~--~~~D~~vlVVda~-~g~~e~~~~~~~~t~~~ 211 (475)
.+++|+||||+.+.+.+ -... . ...|++|+.|+++ +|+. ....+.
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~-------~~Di~~ 135 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLK-------PLDIEF 135 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS--------HHHHHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccch-------HHHHHH
Confidence 46899999997544211 0000 1 1468999999986 3432 233333
Q ss_pred HHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCc
Q 011910 212 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (475)
Q Consensus 212 l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 259 (475)
++.+. ..++ +|-||.|.|..+ .+.++..+..+...|...+++
T Consensus 136 mk~Ls-~~vN-vIPvIaKaD~lt----~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 136 MKRLS-KRVN-VIPVIAKADTLT----PEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp HHHHT-TTSE-EEEEESTGGGS-----HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHhc-cccc-EEeEEecccccC----HHHHHHHHHHHHHHHHHcCce
Confidence 33332 2355 999999999954 467778888888888876543
No 331
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.58 E-value=6.4e-07 Score=69.11 Aligned_cols=74 Identities=23% Similarity=0.423 Sum_probs=57.6
Q ss_pred CceEEEEE--EEccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCcee
Q 011910 311 PFRMPIID--KFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (475)
Q Consensus 311 ~~~~~v~~--~~~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (475)
|-++.|.. +|...+ ++.|+|..|+|++|..| .+..-.+|+||+.++++++.|.+|+.|++.+.|.. ++..||
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eGD 77 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEGD 77 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT-
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCCC
Confidence 44555554 456777 77779999999999999 44567899999999999999999999999999854 799999
Q ss_pred EE
Q 011910 389 VL 390 (475)
Q Consensus 389 vl 390 (475)
+|
T Consensus 78 iL 79 (81)
T PF14578_consen 78 IL 79 (81)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 332
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.57 E-value=2e-07 Score=87.65 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=96.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.+.++++|..|.|||+|++.++...... ..++ ...|-|..+.++ .-+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~-------------~t~k---------------~K~g~Tq~in~f---~v~ 182 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIA-------------DTSK---------------SKNGKTQAINHF---HVG 182 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhh-------------hhcC---------------CCCccceeeeee---ecc
Confidence 455789999999999999999885322110 0100 024555544433 346
Q ss_pred eeEEEEeCCCC----------cCcHHHHhhc---cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEE
Q 011910 160 TRFTILDAPGH----------KSYVPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 226 (475)
Q Consensus 160 ~~~~liDtPGh----------~~f~~~~~~~---~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivv 226 (475)
..+.++|.||. .++.+.+... -..-=-+.|.||+.-++ +......+..+...++| +.+|
T Consensus 183 ~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i-------~~~D~~~i~~~ge~~VP-~t~v 254 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI-------QPTDNPEIAWLGENNVP-MTSV 254 (320)
T ss_pred ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC-------CCCChHHHHHHhhcCCC-eEEe
Confidence 78999999992 1222222222 22334577889998875 36778888999999999 9999
Q ss_pred EEccCCCCCC--chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 227 VNKMDDHTVN--WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 227 iNKiD~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+||||....- ........++..+..+... .| ....|++.+|+.++.|++.|.
T Consensus 255 fTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~-~f--~~~~Pw~~~Ssvt~~Grd~Ll 308 (320)
T KOG2486|consen 255 FTKCDKQKKVKRTGKKPGLNIKINFQGLIRG-VF--LVDLPWIYVSSVTSLGRDLLL 308 (320)
T ss_pred eehhhhhhhccccccCccccceeehhhcccc-ce--eccCCceeeecccccCceeee
Confidence 9999972110 0000001111111111111 01 125678889999999999864
No 333
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.56 E-value=8.1e-09 Score=90.17 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=96.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...+.++|+|+-++||||++.+. -.|.+..+.. ++ .-.|+. |+. ..+..++
T Consensus 18 e~aiK~vivGng~VGKssmiqry--CkgifTkdyk--------kt--------Igvdfl--erq---------i~v~~Ed 68 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRY--CKGIFTKDYK--------KT--------IGVDFL--ERQ---------IKVLIED 68 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHH--hccccccccc--------cc--------cchhhh--hHH---------HHhhHHH
Confidence 45578999999999999999876 3333322110 00 001111 111 1122345
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH--HcCCceEEEEEEccCCCCCCc
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~--~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.+|||.|++.|-.-+-+..+.|...+||.+.++-.. |+ -+.+...... ...+| .++|-||||+ .+.
T Consensus 69 vr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~S---Fe---a~~~w~~kv~~e~~~IP-tV~vqNKIDl--ved 139 (246)
T KOG4252|consen 69 VRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYS---FE---ATLEWYNKVQKETERIP-TVFVQNKIDL--VED 139 (246)
T ss_pred HHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHH---HH---HHHHHHHHHHHHhccCC-eEEeeccchh--hHh
Confidence 678899999999998888788899999999999876531 22 3333333222 34688 7889999999 332
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+.- -..++..+.+.+ ..+++.+|++...|+...+
T Consensus 140 s~~----~~~evE~lak~l------~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 140 SQM----DKGEVEGLAKKL------HKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred hhc----chHHHHHHHHHh------hhhhhhhhhhhhhhhHHHH
Confidence 221 122333333433 3478999999999987754
No 334
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.55 E-value=6e-07 Score=70.85 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=60.5
Q ss_pred eEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCc
Q 011910 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 386 (475)
Q Consensus 313 ~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (475)
...|++++ +..|.++++||.+|+|++||.|.+...+...+|..|... ..++++|.|||++++ .|+ .+++.
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~ 77 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGL--KQTRT 77 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECC--CCccc
Confidence 34566655 346999999999999999999998776667788888654 578999999999995 565 44889
Q ss_pred eeEEec
Q 011910 387 GFVLSS 392 (475)
Q Consensus 387 G~vl~~ 392 (475)
||+|+.
T Consensus 78 Gdtl~~ 83 (83)
T cd04092 78 GDTLVT 83 (83)
T ss_pred CCEEeC
Confidence 999873
No 335
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.54 E-value=5.3e-07 Score=71.46 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=62.3
Q ss_pred CCceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccC
Q 011910 310 GPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEED 383 (475)
Q Consensus 310 ~~~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~ 383 (475)
.||.+.|..+.. ..|.++++||++|+|+.||.|.... ....+|..|+.. ..++++|.|||+|++ .++ .+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai--~gl--~~ 76 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAIL--TGL--KG 76 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEE--ECC--CC
Confidence 578888888863 4699999999999999999998755 445678888765 468899999999995 565 34
Q ss_pred CCceeEEe
Q 011910 384 ILSGFVLS 391 (475)
Q Consensus 384 i~~G~vl~ 391 (475)
++.||+|+
T Consensus 77 ~~~Gdtl~ 84 (85)
T cd03690 77 LRVGDVLG 84 (85)
T ss_pred CcCccccC
Confidence 88999885
No 336
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.52 E-value=8.5e-07 Score=69.96 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=60.6
Q ss_pred EEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCce
Q 011910 314 MPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 387 (475)
Q Consensus 314 ~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (475)
..|+++.. ..|.++++||++|+|++||.|.+...+...+|..|... ..++++|.|||++++ .|++ +++.|
T Consensus 3 a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~~--~~~~G 78 (83)
T cd04088 3 ALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGLK--DTATG 78 (83)
T ss_pred EEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECCC--CCccC
Confidence 44555542 36999999999999999999998887777888888664 468899999999996 5664 48899
Q ss_pred eEEec
Q 011910 388 FVLSS 392 (475)
Q Consensus 388 ~vl~~ 392 (475)
|+|++
T Consensus 79 dtl~~ 83 (83)
T cd04088 79 DTLCD 83 (83)
T ss_pred CEeeC
Confidence 99863
No 337
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.49 E-value=1.8e-06 Score=68.59 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=61.0
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC---CccceeeCCCCEEEEEeccC-CccCCC
Q 011910 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDIL 385 (475)
Q Consensus 312 ~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~-~~~~i~ 385 (475)
|.+.|+.+. +..|.++++||++|+|+.||.|.+...+...+|..|... ..+++++.|||++++. .++ ...+++
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCccc
Confidence 345666665 346999999999999999999998776666777777754 4688999999999973 222 124588
Q ss_pred ceeEEec
Q 011910 386 SGFVLSS 392 (475)
Q Consensus 386 ~G~vl~~ 392 (475)
.||+|++
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
No 338
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.47 E-value=2e-06 Score=90.75 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=68.7
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
..++|+++|.+|+|||||+|.|+....... .. ...+ |...........+.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~v-------------------------ss----~~~~-TTr~~ei~~~idG~ 166 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFST-------------------------DA----FGMG-TTSVQEIEGLVQGV 166 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccc-------------------------cC----CCCC-ceEEEEEEEEECCc
Confidence 346899999999999999999964321100 00 0112 22233334455788
Q ss_pred eEEEEeCCCCcCcH------HHHhh----ccc--cCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cC---CceEE
Q 011910 161 RFTILDAPGHKSYV------PNMIS----GAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLL 224 (475)
Q Consensus 161 ~~~liDtPGh~~f~------~~~~~----~~~--~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~---i~~ii 224 (475)
.+.+|||||..+.. ..++. .+. .+|++|+|+....-.. .......+..+.. +| ..++|
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~eD~~aLr~Iq~lFG~~Iwk~tI 240 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSNDLPLLRTITDVLGPSIWFNAI 240 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHHHHHHHHHHHHHhCHHhHcCEE
Confidence 99999999987531 12212 222 4788888876542211 0112223333322 23 45689
Q ss_pred EEEEccCCCC
Q 011910 225 LVVNKMDDHT 234 (475)
Q Consensus 225 vviNKiD~~~ 234 (475)
||+|..|..+
T Consensus 241 VVFThgD~lp 250 (763)
T TIGR00993 241 VTLTHAASAP 250 (763)
T ss_pred EEEeCCccCC
Confidence 9999999864
No 339
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.46 E-value=3.4e-07 Score=88.60 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=51.0
Q ss_pred EEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-----
Q 011910 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET----- 159 (475)
Q Consensus 85 v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~----- 159 (475)
|+|+|.+|+|||||+++|....... ....+.|++.....+...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~-------------------------------~n~pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA-------------------------------ANYPFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc-------------------------------ccccccchhceeeeEEeccchhhh
Confidence 5899999999999999993322110 0012334333332222222
Q ss_pred ------------eeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCC
Q 011910 160 ------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 195 (475)
Q Consensus 160 ------------~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~ 195 (475)
..+.|+|+||... .....+..++.+|++++|||+..
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 2599999999542 23345556789999999999853
No 340
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.46 E-value=1.8e-06 Score=68.56 Aligned_cols=76 Identities=22% Similarity=0.417 Sum_probs=59.1
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC---CeEEEEEEEEC----CccceeeCCCCEEEEEeccCCcc
Q 011910 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 382 (475)
Q Consensus 312 ~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~ 382 (475)
|++.|+++. +..|.++++||++|+|++||+|.+...+ ...+|.+|... ..+++++.|||+++ +.++ .
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~--i~gl--~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVA--IAGI--E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEE--EECC--C
Confidence 467777765 3469999999999999999999876553 24677787543 46889999999997 5665 3
Q ss_pred CCCceeEEe
Q 011910 383 DILSGFVLS 391 (475)
Q Consensus 383 ~i~~G~vl~ 391 (475)
+++.|++|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 588999985
No 341
>PTZ00258 GTP-binding protein; Provisional
Probab=98.45 E-value=4.5e-07 Score=91.65 Aligned_cols=83 Identities=20% Similarity=0.153 Sum_probs=54.2
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 158 (475)
....|+|+|.+|+|||||+++|......+ ....+.|++.....+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v-------------------------------~n~pftTi~p~~g~v~~~d~ 68 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPA-------------------------------ENFPFCTIDPNTARVNVPDE 68 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccc-------------------------------cCCCCCcccceEEEEecccc
Confidence 34579999999999999999993211100 001334444443333332
Q ss_pred ---------------CeeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecC
Q 011910 159 ---------------TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISAR 194 (475)
Q Consensus 159 ---------------~~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~ 194 (475)
..++.|+||||... .....+..++.+|++++|||+.
T Consensus 69 r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 69 RFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred hhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999542 2334556678999999999985
No 342
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.43 E-value=1.6e-06 Score=74.26 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=108.7
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..-.+.|+++|....|||||+-..+.... +. .-+...|+..--...++...
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~--de---------------------------~~~q~~GvN~mdkt~~i~~t 67 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEY--DE---------------------------EYTQTLGVNFMDKTVSIRGT 67 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchh--HH---------------------------HHHHHhCccceeeEEEecce
Confidence 34557899999999999999854422111 00 01112333332223333334
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC---CceEEEEEEccCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHTV 235 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~---i~~iivviNKiD~~~~ 235 (475)
...+.|+|..|+++|.+..--+...+-+++++.|-+...+- ...++..++++.++ +| |+|-+|.|.. .
T Consensus 68 ~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TL------nSi~~WY~QAr~~NktAiP--ilvGTKyD~f-i 138 (205)
T KOG1673|consen 68 DISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTL------NSIKEWYRQARGLNKTAIP--ILVGTKYDLF-I 138 (205)
T ss_pred EEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHH------HHHHHHHHHHhccCCccce--EEeccchHhh-h
Confidence 55688999999999998877777888889999998876541 34566777777765 56 5789999973 3
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+...+....+..+.+.+.+.. +.+.+.+|+.+..|+.+.+
T Consensus 139 ~lp~e~Q~~I~~qar~YAk~m------nAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 139 DLPPELQETISRQARKYAKVM------NASLFFCSTSHSINVQKIF 178 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHHh------CCcEEEeeccccccHHHHH
Confidence 344455566777777777765 4578999999999998864
No 343
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.42 E-value=8e-07 Score=89.68 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=85.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...+++.++|.+|+|||++++.+. .+.+.-. .|++ .|-..-..++.+.-
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vt--radvevq-----------------pYaF------------TTksL~vGH~dykY 214 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVT--RADDEVQ-----------------PYAF------------TTKLLLVGHLDYKY 214 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccc--ccccccC-----------------Cccc------------ccchhhhhhhhhhe
Confidence 455789999999999999988762 1111000 0111 11111112344455
Q ss_pred eeEEEEeCCCCcCc------HHHH--hhcc-ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-----cCCceEEE
Q 011910 160 TRFTILDAPGHKSY------VPNM--ISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLL 225 (475)
Q Consensus 160 ~~~~liDtPGh~~f------~~~~--~~~~-~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-----~~i~~iiv 225 (475)
.++.++||||.-+- .-+| +.++ ..--++++++|-++-. |+ ...+.+.+... .+-| +|+
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C---Gy----Sva~QvkLfhsIKpLFaNK~-~Il 286 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC---GY----SVAAQVKLYHSIKPLFANKV-TIL 286 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh---CC----CHHHHHHHHHHhHHHhcCCc-eEE
Confidence 67999999996443 1122 2332 2445689999987632 12 22333333322 2445 899
Q ss_pred EEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccc
Q 011910 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (475)
Q Consensus 226 viNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~ 279 (475)
|+||+|........+.-+++.+ .+..- .+++++.+|..+-+|+-+
T Consensus 287 vlNK~D~m~~edL~~~~~~ll~----~~~~~-----~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 287 VLNKIDAMRPEDLDQKNQELLQ----TIIDD-----GNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred EeecccccCccccCHHHHHHHH----HHHhc-----cCceEEEecccchhceee
Confidence 9999998544322222223333 22222 357899999999999865
No 344
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.42 E-value=1.8e-06 Score=79.94 Aligned_cols=88 Identities=25% Similarity=0.246 Sum_probs=61.8
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
....-+|+++|.+.+|||||+..+-..... +. .| .-.|...-+..+.++
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~Se------------aA-------~y------------eFTTLtcIpGvi~y~ 107 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSE------------AA-------SY------------EFTTLTCIPGVIHYN 107 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhh------------hh-------ce------------eeeEEEeecceEEec
Confidence 445578999999999999999987221110 00 00 113344445567788
Q ss_pred CeeEEEEeCCCCcCc-------HHHHhhccccCCEEEEEEecCCCc
Q 011910 159 TTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGE 197 (475)
Q Consensus 159 ~~~~~liDtPGh~~f-------~~~~~~~~~~~D~~vlVVda~~g~ 197 (475)
+..+.++|.||...= -+..++.++.||.++.|+||..+.
T Consensus 108 ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 108 GANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred CceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 999999999996432 455667788999999999998863
No 345
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.41 E-value=3.1e-06 Score=83.03 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=92.4
Q ss_pred ccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhh-hhcceEEeeee
Q 011910 74 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEE-RIKGKTVEVGR 152 (475)
Q Consensus 74 ~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e-~~~g~ti~~~~ 152 (475)
.......-..+|.++|..|.||||+++.|+.+.-. +.. ..+....+ ...++.+....
T Consensus 15 ~~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~-~~~---------------------~~~~~~~~~~~~~~~i~~~~ 72 (373)
T COG5019 15 RKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLV-DET---------------------EIDDIRAEGTSPTLEIKITK 72 (373)
T ss_pred HHHHhcCCceEEEEecCCCCchhHHHHhhhHhhcc-CCC---------------------CccCcccccCCcceEEEeee
Confidence 33334455679999999999999999999765211 100 00111111 23445555555
Q ss_pred eEEeeCC--eeEEEEeCCCCcCcHHHHh---------------------hccc-------cCCEEEEEEecC-CCccccc
Q 011910 153 AHFETET--TRFTILDAPGHKSYVPNMI---------------------SGAS-------QADIGVLVISAR-KGEFETG 201 (475)
Q Consensus 153 ~~~~~~~--~~~~liDtPGh~~f~~~~~---------------------~~~~-------~~D~~vlVVda~-~g~~e~~ 201 (475)
..+.-++ .++++|||||.-+++.+.. ..-+ ..++||+.+-.+ +|+.
T Consensus 73 ~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~--- 149 (373)
T COG5019 73 AELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLK--- 149 (373)
T ss_pred eeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCC---
Confidence 5555554 4589999999877743321 1111 368999999864 3432
Q ss_pred cCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcC
Q 011910 202 FEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (475)
Q Consensus 202 ~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~ 258 (475)
....+.++.+. ..+. +|-||-|.|..+ ...+...++.+...+...++
T Consensus 150 ----~~DIe~Mk~ls-~~vN-lIPVI~KaD~lT----~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 150 ----PLDIEAMKRLS-KRVN-LIPVIAKADTLT----DDELAEFKERIREDLEQYNI 196 (373)
T ss_pred ----HHHHHHHHHHh-cccC-eeeeeeccccCC----HHHHHHHHHHHHHHHHHhCC
Confidence 34444444432 2455 899999999954 45677788888888877654
No 346
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.41 E-value=9.2e-07 Score=70.44 Aligned_cols=41 Identities=29% Similarity=0.521 Sum_probs=36.6
Q ss_pred cccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeee
Q 011910 399 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLH 442 (475)
Q Consensus 399 ~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~ 442 (475)
+++.|+|++.| +++ ++|.+||++++|+|+.+++|+|.++..
T Consensus 2 ~~~~f~A~i~i---l~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~ 43 (87)
T cd03708 2 ACWEFEAEILV---LHHPTTISPGYQATVHIGSIRQTARIVSIDK 43 (87)
T ss_pred ceeEEEEEEEE---EcCCCcccCCCEeEEEEcCCEEEEEEEeccH
Confidence 47899999999 555 789999999999999999999998864
No 347
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.40 E-value=2.8e-06 Score=66.71 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=58.5
Q ss_pred EEEEEEE-ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCcee
Q 011910 314 MPIIDKF-KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (475)
Q Consensus 314 ~~v~~~~-~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (475)
..|+.+. ...|.++++||++|+|++||.|.+...+...+|..|... ..+++++.|||+++ +.++ . ++.||
T Consensus 3 a~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~--~-~~~Gd 77 (81)
T cd04091 3 GLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGI--D-CASGD 77 (81)
T ss_pred EEEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECC--C-cccCC
Confidence 3444443 224999999999999999999999887778888888664 46889999999999 5555 3 88999
Q ss_pred EEe
Q 011910 389 VLS 391 (475)
Q Consensus 389 vl~ 391 (475)
+|+
T Consensus 78 tl~ 80 (81)
T cd04091 78 TFT 80 (81)
T ss_pred Eec
Confidence 986
No 348
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.39 E-value=7.8e-07 Score=88.96 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=52.5
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC---
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--- 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--- 159 (475)
..|+++|.+|+|||||+++|......+. ...+.|++.....+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~-------------------------------nypftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAA-------------------------------NYPFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeec-------------------------------ccccccccceEEEEEeccccc
Confidence 5799999999999999999943221100 012333333222222221
Q ss_pred --------------eeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCC
Q 011910 160 --------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 195 (475)
Q Consensus 160 --------------~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~ 195 (475)
..+.|+|+||... .....+..++.||++++|||+..
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 3589999999543 23345556789999999999853
No 349
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.36 E-value=8.5e-07 Score=91.16 Aligned_cols=156 Identities=15% Similarity=0.101 Sum_probs=92.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|.-|+|||+|+-.|+...-.-.- ..++ .-++|- ..+.-+.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~V--------------------P~rl--------~~i~IP---advtPe~ 55 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAV--------------------PRRL--------PRILIP---ADVTPEN 55 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccc--------------------cccC--------CccccC---CccCcCc
Confidence 45689999999999999999988544321000 0011 123332 2222334
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-----CCceEEEEEEccCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~-----~i~~iivviNKiD~~~ 234 (475)
....|+||+-..+-.......++.||++.+|.++++..+- .......|=+.+.+ ++| +|+|-||+|...
T Consensus 56 vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~-----D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~~ 129 (625)
T KOG1707|consen 56 VPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTV-----DRISTKWLPLIRQLFGDYHETP-VILVGNKSDNGD 129 (625)
T ss_pred CceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHh-----hhhhhhhhhhhhcccCCCccCC-EEEEeeccCCcc
Confidence 4489999997766555666778999999999988875442 23334445555554 478 999999999843
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. ....+....-+...+++. -.-|.+||++-.|+.+++
T Consensus 130 ~~--~~s~e~~~~pim~~f~Ei-------EtciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 130 NE--NNSDEVNTLPIMIAFAEI-------ETCIECSALTLANVSELF 167 (625)
T ss_pred cc--ccchhHHHHHHHHHhHHH-------HHHHhhhhhhhhhhHhhh
Confidence 22 111111111111111111 134677888877777654
No 350
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.35 E-value=3.7e-06 Score=66.57 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=55.4
Q ss_pred cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 322 DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 322 ~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
..|.++++||++|+|+.||.|+....+...+|..|... +.++++|.|||++++ .++ .+++.||+|++
T Consensus 14 ~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v--~gl--~~~~~Gdtl~~ 84 (85)
T cd03689 14 HRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGL--VNP--GNFQIGDTLTE 84 (85)
T ss_pred CCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEE--ECC--CCccccCEeeC
Confidence 46999999999999999999988776666778788654 468899999999995 454 44889999974
No 351
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=6e-06 Score=76.07 Aligned_cols=145 Identities=19% Similarity=0.226 Sum_probs=83.9
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 159 (475)
-..||.+||..|.|||||++.|.. ++..+. + ..+...+-...-+.++.....++-++
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~-s~v~~~-------------s--------~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFK-SHVSDS-------------S--------SSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHH-HHHhhc-------------c--------CCCcccCcccceEEEEeeeeeeeecce
Confidence 346999999999999999999832 211110 0 01111111112233444444455454
Q ss_pred -eeEEEEeCCCCcCc---------------------HHHHhhccc-------cCCEEEEEEecCCCccccccCCCcchHH
Q 011910 160 -TRFTILDAPGHKSY---------------------VPNMISGAS-------QADIGVLVISARKGEFETGFEKGGQTRE 210 (475)
Q Consensus 160 -~~~~liDtPGh~~f---------------------~~~~~~~~~-------~~D~~vlVVda~~g~~e~~~~~~~~t~~ 210 (475)
-++++|||||+-++ +..-+...+ ..+++++.|.++... +.+-..+
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs------LrplDie 176 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS------LRPLDIE 176 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc------cCcccHH
Confidence 35899999997555 222222221 357889988876432 3456666
Q ss_pred HHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCc
Q 011910 211 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (475)
Q Consensus 211 ~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 259 (475)
.++.+. .+-.+|-||-|.|....+ .....++.++.-|...+++
T Consensus 177 flkrLt--~vvNvvPVIakaDtlTle----Er~~FkqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 177 FLKRLT--EVVNVVPVIAKADTLTLE----ERSAFKQRIRKELEKHGID 219 (336)
T ss_pred HHHHHh--hhheeeeeEeecccccHH----HHHHHHHHHHHHHHhcCcc
Confidence 665543 233478899999986542 3345566677777666553
No 352
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.34 E-value=1.5e-06 Score=78.92 Aligned_cols=159 Identities=20% Similarity=0.269 Sum_probs=92.6
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
..+.+++||...+|||.|+-.+ .++.+....+ ..+.|+.. ..++++ .....
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~--t~~~fp~~yv-----------------PTVFdnys----~~v~V~------dg~~v 53 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISY--TTNAFPEEYV-----------------PTVFDNYS----ANVTVD------DGKPV 53 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEe--ccCcCccccc-----------------CeEEccce----EEEEec------CCCEE
Confidence 3468999999999999998533 4443322110 11112111 111111 12234
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCCCch
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~~~~ 238 (475)
.+.+|||.|+++|-+-+.-....+|++|++.+...... |+ .-....+-..+. -++| +|+|.+|.|+.. +
T Consensus 54 ~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S---~~--nv~~kW~pEi~~~cp~vp-iiLVGtk~DLr~-d-- 124 (198)
T KOG0393|consen 54 ELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPES---FE--NVKSKWIPEIKHHCPNVP-IILVGTKADLRD-D-- 124 (198)
T ss_pred EEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhh---HH--HHHhhhhHHHHhhCCCCC-EEEEeehHHhhh-C--
Confidence 58999999999996644445678999999888766532 11 111222222222 3688 999999999941 1
Q ss_pred HHHHHHHH---------hhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIE---------SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~---------~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
....+.+. .+-..+.+++| ...++.+||++..|+.+.++
T Consensus 125 ~~~~~~l~~~~~~~Vt~~~g~~lA~~ig-----a~~y~EcSa~tq~~v~~vF~ 172 (198)
T KOG0393|consen 125 PSTLEKLQRQGLEPVTYEQGLELAKEIG-----AVKYLECSALTQKGVKEVFD 172 (198)
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhC-----cceeeeehhhhhCCcHHHHH
Confidence 11222221 22233344444 35899999999999888643
No 353
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.32 E-value=7.2e-06 Score=81.37 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=55.8
Q ss_pred CCeeEEEEeCCCCcCcHHH-------Hhhc-----cccCCEEEEEEecCCCccccccCCCcchHHHHHHH-HHcCCceEE
Q 011910 158 ETTRFTILDAPGHKSYVPN-------MISG-----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLL 224 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~-------~~~~-----~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~-~~~~i~~ii 224 (475)
.++.+.||||||...+-.+ +... ...++..+||+||..|- ......... ...++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 5678999999997654222 2211 12578899999999762 222222222 234444 4
Q ss_pred EEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 225 vviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+++||+|.. . +.-.+.+.+ ... ..|+..++ +|++++++
T Consensus 264 iIlTKlD~t-~-----~~G~~l~~~----~~~------~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGT-A-----KGGVVFAIA----DEL------GIPIKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCC-C-----CccHHHHHH----HHH------CCCEEEEe--CCCChhhC
Confidence 689999963 2 122233322 222 35788887 79998775
No 354
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.32 E-value=1.3e-05 Score=68.69 Aligned_cols=148 Identities=20% Similarity=0.163 Sum_probs=88.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee-eeEEeeC-
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETE- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~-~~~~~~~- 158 (475)
+...|+++|.-+.|||.++.+|++-.+..... .--||.-. ..+++++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e-------------------------------~~pTiEDiY~~svet~r 56 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE-------------------------------LHPTIEDIYVASVETDR 56 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCc-------------------------------cccchhhheeEeeecCC
Confidence 45689999999999999999998765543221 11122111 1222222
Q ss_pred --CeeEEEEeCCCCcCcHHHHh-hccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-----HcCCceEEEEEEcc
Q 011910 159 --TTRFTILDAPGHKSYVPNMI-SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----TLGVTKLLLVVNKM 230 (475)
Q Consensus 159 --~~~~~liDtPGh~~f~~~~~-~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-----~~~i~~iivviNKi 230 (475)
...+.|.||.|...+..+.- ..++.+|+.+||.|..+... | |-.+.++.-. +..+| ++|..||.
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eS---f----~rv~llKk~Idk~KdKKEvp-iVVLaN~r 128 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPES---F----QRVELLKKEIDKHKDKKEVP-IVVLANKR 128 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHH---H----HHHHHHHHHHhhcccccccc-EEEEechh
Confidence 34689999999998844443 35778999999999887532 2 2222222211 12477 88899999
Q ss_pred CCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccc
Q 011910 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (475)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~ 279 (475)
|+... .+ ......+.+.++ ..+..+.+++.....+-+
T Consensus 129 dr~~p--~~----vd~d~A~~Wa~r------Ekvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 129 DRAEP--RE----VDMDVAQIWAKR------EKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred hcccc--hh----cCHHHHHHHHhh------hheeEEEEEeccchhhhh
Confidence 99321 11 111112223332 246788888876655544
No 355
>PRK14974 cell division protein FtsY; Provisional
Probab=98.27 E-value=6.3e-06 Score=82.11 Aligned_cols=94 Identities=15% Similarity=0.216 Sum_probs=57.0
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhc------cccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~------~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviNKi 230 (475)
.++.+.||||||....-.+.+.. ...+|..+||+||..| ....+.+.... ..++. -+++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g---------~d~~~~a~~f~~~~~~~--giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG---------NDAVEQAREFNEAVGID--GVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc---------hhHHHHHHHHHhcCCCC--EEEEeee
Confidence 35679999999976543332222 2368999999999876 23333333332 45776 3589999
Q ss_pred CCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
|... ++-.+.+.+ ... ..|+..++ +|++++++
T Consensus 290 D~~~------~~G~~ls~~----~~~------~~Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 290 DADA------KGGAALSIA----YVI------GKPILFLG--VGQGYDDL 321 (336)
T ss_pred cCCC------CccHHHHHH----HHH------CcCEEEEe--CCCChhhc
Confidence 9832 111222221 111 34777877 69999775
No 356
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=98.24 E-value=4.8e-06 Score=66.77 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=45.5
Q ss_pred ccEEEEEEEEeeccc---cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 400 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 400 ~~~f~A~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
+..|+|++.+|+... ..+|+.||++++|+|+.++.|+|..+. +|++|++|+.+.++|.|+
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~ 65 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELI 65 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEEC
Confidence 688999999966322 268999999999999999999998875 344455555555555554
No 357
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.22 E-value=4.7e-06 Score=73.98 Aligned_cols=80 Identities=24% Similarity=0.265 Sum_probs=52.5
Q ss_pred ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCc
Q 011910 180 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (475)
Q Consensus 180 ~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 259 (475)
.++.+|++|+|+|+.++.. .+..+....+...+.| +++|+||+|+.. ....... ..+....
T Consensus 9 i~~~aD~vl~V~D~~~~~~-------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~----~~~~~~~----~~~~~~~--- 69 (156)
T cd01859 9 IIKESDVVLEVLDARDPEL-------TRSRKLERYVLELGKK-LLIVLNKADLVP----KEVLEKW----KSIKESE--- 69 (156)
T ss_pred HHhhCCEEEEEeeCCCCcc-------cCCHHHHHHHHhCCCc-EEEEEEhHHhCC----HHHHHHH----HHHHHhC---
Confidence 3456999999999987653 2444444555556777 899999999832 1111111 1122221
Q ss_pred ccCCeeEEEeeccccccccccc
Q 011910 260 VKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 260 ~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..+++++||++|.|+.++.
T Consensus 70 ---~~~~~~iSa~~~~gi~~L~ 88 (156)
T cd01859 70 ---GIPVVYVSAKERLGTKILR 88 (156)
T ss_pred ---CCcEEEEEccccccHHHHH
Confidence 3478999999999998853
No 358
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=8.1e-06 Score=72.56 Aligned_cols=148 Identities=20% Similarity=0.265 Sum_probs=96.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeE--Ee-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH--FE- 156 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~--~~- 156 (475)
.....++++|..+.||||++.+.+ +|.+. .....|+...... |.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~l--tgeFe-------------------------------~~y~at~Gv~~~pl~f~t 54 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHL--TGEFE-------------------------------KTYPATLGVEVHPLLFDT 54 (216)
T ss_pred cceEEEEEecCCcccccchhhhhh--cccce-------------------------------ecccCcceeEEeeeeeec
Confidence 456789999999999999998773 23211 1112222222221 22
Q ss_pred -eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cCCceEEEEEEccCCCC
Q 011910 157 -TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 157 -~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~i~~iivviNKiD~~~ 234 (475)
....+|+.+||.|.+.|....-.+.-.+-+|+++.|...-.+.. .-.+.|-.+++. .++| ++++-||.|...
T Consensus 55 n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~-----n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~ 128 (216)
T KOG0096|consen 55 NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYK-----NVPRWHRDLVRVRENIP-IVLCGNKVDIKA 128 (216)
T ss_pred ccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhh-----cchHHHHHHHHHhcCCC-eeeeccceeccc
Confidence 23478999999999999877666666778999999988765532 233444445544 3578 999999999722
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
. +++. +...+..+.++.++.+||++..|++..
T Consensus 129 r--------~~k~------k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 129 R--------KVKA------KPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred c--------cccc------ccceeeecccceeEEeecccccccccc
Confidence 1 1111 111222235788999999999999875
No 359
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.19 E-value=1.9e-05 Score=76.70 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=55.7
Q ss_pred CCeeEEEEeCCCCcCcHHHHhh-------cc-----ccCCEEEEEEecCCCccccccCCCcchHHHHHH-HHHcCCceEE
Q 011910 158 ETTRFTILDAPGHKSYVPNMIS-------GA-----SQADIGVLVISARKGEFETGFEKGGQTREHVML-AKTLGVTKLL 224 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~-------~~-----~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~-~~~~~i~~ii 224 (475)
.++.+.||||||....-...+. .. ..+|..+||+|+..|- .....+.. ....++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHHHHHHhhCCCC--E
Confidence 5678999999998754333221 11 2489999999998662 23333322 3345555 4
Q ss_pred EEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 225 vviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+++||+|... ++-.+.+.. ... ..|+..++ +|++++++
T Consensus 222 ~IlTKlDe~~------~~G~~l~~~----~~~------~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 222 IILTKLDGTA------KGGIILSIA----YEL------KLPIKFIG--VGEKIDDL 259 (272)
T ss_pred EEEEccCCCC------CccHHHHHH----HHH------CcCEEEEe--CCCChHhC
Confidence 6899999732 122222211 122 34677777 78888765
No 360
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.18 E-value=1.4e-05 Score=75.51 Aligned_cols=92 Identities=12% Similarity=0.015 Sum_probs=56.7
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+...|+|+|+.++|||||+|+|+.....+.- ........+|+-+....... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~------------------------~~~~~~~T~gi~~~~~~~~~-~~ 58 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDV------------------------MDTSQQTTKGIWMWSVPFKL-GK 58 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEe------------------------cCCCCCCccceEEEeccccC-CC
Confidence 356678999999999999999999654211110 00011122444433322211 24
Q ss_pred CeeEEEEeCCCCcCc------HHHHhhcccc--CCEEEEEEecCC
Q 011910 159 TTRFTILDAPGHKSY------VPNMISGASQ--ADIGVLVISARK 195 (475)
Q Consensus 159 ~~~~~liDtPGh~~f------~~~~~~~~~~--~D~~vlVVda~~ 195 (475)
+..+.++||||..+. ....+.++.. +|+.|+.++...
T Consensus 59 ~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 59 EHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 578999999996543 3334555554 999999998764
No 361
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.17 E-value=1.1e-05 Score=82.63 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=41.1
Q ss_pred CCeeEEEEeCCCCcCcH----HHHhhc--cccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSYV----PNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~----~~~~~~--~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviNKi 230 (475)
.++.+.||||||....- .++... ...+|-++||+||..|- .....+.... ..++. -+++||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---------~a~~~a~~F~~~~~~~--g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---------AAEAQAKAFKDSVDVG--SVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---------hHHHHHHHHHhccCCc--EEEEECc
Confidence 36789999999976443 222222 33588999999998772 2333333332 23444 4689999
Q ss_pred CC
Q 011910 231 DD 232 (475)
Q Consensus 231 D~ 232 (475)
|.
T Consensus 250 D~ 251 (429)
T TIGR01425 250 DG 251 (429)
T ss_pred cC
Confidence 97
No 362
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=98.15 E-value=9.1e-06 Score=65.58 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=45.5
Q ss_pred ccEEEEEEEEeeccc---cccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 400 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 400 ~~~f~A~i~~~~~~~---~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
+.+|+|++.||+... +.+|+.||++.+|+++.++.|+|..+.. |++|++|+.+.++|.|+
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~~~-------------~~~l~~g~~~~v~i~l~ 65 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPPG-------------KEMVMPGEDTKVTLILR 65 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECCCC-------------CcEeCCCCEEEEEEEEC
Confidence 589999999965322 3789999999999999999999988721 44566666666666654
No 363
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.15 E-value=1.1e-05 Score=70.53 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=54.0
Q ss_pred HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCCCchHHHHHHHHhhhhhH
Q 011910 175 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 252 (475)
Q Consensus 175 ~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~ 252 (475)
+.....+..+|++++|+|+..+.. .+..+....+... +.| +++|+||+|+.. +.... .+...
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~-------~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~----~~~~~----~~~~~ 66 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL-------FRPPDLERYVKEVDPRKK-NILLLNKADLLT----EEQRK----AWAEY 66 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc-------cCCHHHHHHHHhccCCCc-EEEEEechhcCC----HHHHH----HHHHH
Confidence 345667889999999999988753 3444555555555 777 889999999832 12222 22334
Q ss_pred hhhhcCcccCCeeEEEeecccccc
Q 011910 253 LKASGYNVKKDVQFLPISGLMGLN 276 (475)
Q Consensus 253 l~~~~~~~~~~~~iipiSa~~g~g 276 (475)
++..+ .+++++||++|.+
T Consensus 67 ~~~~~------~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKEG------IVVVFFSALKENA 84 (141)
T ss_pred HHhcC------CeEEEEEecCCCc
Confidence 44433 3689999999986
No 364
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.15 E-value=6.3e-06 Score=73.30 Aligned_cols=85 Identities=15% Similarity=0.044 Sum_probs=53.3
Q ss_pred HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhh
Q 011910 177 MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK 254 (475)
Q Consensus 177 ~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~ 254 (475)
...++..+|.+++|+|+..+.. .........+... +.| +|+|+||+|+.. ++........ +.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~-------~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~----~~~~~~~~~~----~~ 65 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMG-------TRCKHVEEYLKKEKPHKH-LIFVLNKCDLVP----TWVTARWVKI----LS 65 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcc-------ccCHHHHHHHHhccCCCC-EEEEEEchhcCC----HHHHHHHHHH----Hh
Confidence 3467889999999999988642 2344444444433 377 889999999942 2222222221 21
Q ss_pred hhcCcccCCeeEEEeecccccccccccc
Q 011910 255 ASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 255 ~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+. + .+.++++||++|.|+.++.+
T Consensus 66 ~~-~----~~~~~~iSa~~~~~~~~L~~ 88 (157)
T cd01858 66 KE-Y----PTIAFHASINNPFGKGSLIQ 88 (157)
T ss_pred cC-C----cEEEEEeeccccccHHHHHH
Confidence 11 1 12368999999999987543
No 365
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.15 E-value=4.4e-06 Score=77.78 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=58.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
-+|.++|-+..|||||+..|......+.. --+.|.-.......+.+.++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vas-------------------------------yefttl~~vpG~~~y~gaKi 108 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAA-------------------------------YEFTTLTTVPGVIRYKGAKI 108 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCcccc-------------------------------ccceeEEEecceEeccccce
Confidence 47999999999999999888322211110 01233333334455778899
Q ss_pred EEEeCCCCcCc-------HHHHhhccccCCEEEEEEecCCCc
Q 011910 163 TILDAPGHKSY-------VPNMISGASQADIGVLVISARKGE 197 (475)
Q Consensus 163 ~liDtPGh~~f-------~~~~~~~~~~~D~~vlVVda~~g~ 197 (475)
.+.|.||..+= -+.+++.++.|+.+++|+|+..++
T Consensus 109 qlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 109 QLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred eeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 99999996433 456677788999999999998764
No 366
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.8e-05 Score=81.57 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=61.0
Q ss_pred eEEEEeCCCCcC--cHHHHh-hccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 161 RFTILDAPGHKS--YVPNMI-SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 161 ~~~liDtPGh~~--f~~~~~-~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.+.++|.||..- -...++ .-.-.+|+.|||+.|..-.+ ++..++......+-|+++|+.||+|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--------~sek~Ff~~vs~~KpniFIlnnkwDasas-- 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--------LSEKQFFHKVSEEKPNIFILNNKWDASAS-- 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--------HHHHHHHHHhhccCCcEEEEechhhhhcc--
Confidence 489999999632 223333 33457999999999987653 66777766666778889999999997322
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL 272 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~ 272 (475)
..+-.+.++.++. -|+-..+. ...-.++.+||+
T Consensus 277 e~ec~e~V~~Qi~-eL~v~~~~-eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 277 EPECKEDVLKQIH-ELSVVTEK-EAADRVFFVSAK 309 (749)
T ss_pred cHHHHHHHHHHHH-hcCcccHh-hhcCeeEEEecc
Confidence 1233344444433 11111111 112267888854
No 367
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.13 E-value=8e-06 Score=75.08 Aligned_cols=94 Identities=14% Similarity=0.006 Sum_probs=55.0
Q ss_pred cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhH
Q 011910 173 YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 252 (475)
Q Consensus 173 f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~ 252 (475)
|...+...+..+|++++|+|+.+... .....+ .....+.| +++|+||+|+..........+..... ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~--~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL-RLFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRA--KA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC--------ccchhH-HHhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHH--HH
Confidence 56666667789999999999987532 111222 22234666 88999999994322111111111100 01
Q ss_pred hhhhcCcccCCeeEEEeeccccccccccc
Q 011910 253 LKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 253 l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.+..++. ..+++++||++|.|++++.
T Consensus 92 ~~~~~~~---~~~i~~vSA~~~~gi~eL~ 117 (190)
T cd01855 92 AAGLGLK---PKDVILISAKKGWGVEELI 117 (190)
T ss_pred HhhcCCC---cccEEEEECCCCCCHHHHH
Confidence 1222221 1268999999999999863
No 368
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.11 E-value=3.4e-06 Score=75.05 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
...+|+++|.+|+|||||+|+|+.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhc
Confidence 346899999999999999999954
No 369
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.11 E-value=8.9e-06 Score=75.09 Aligned_cols=66 Identities=20% Similarity=0.380 Sum_probs=43.4
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhc------cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~------~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
+++.+.||||||...+-...+.. ....+-++||+||+.+. .............++..+ ++||+|
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--------~~~~~~~~~~~~~~~~~l--IlTKlD 151 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--------EDLEQALAFYEAFGIDGL--ILTKLD 151 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--------HHHHHHHHHHHHSSTCEE--EEESTT
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--------HHHHHHHHHhhcccCceE--EEEeec
Confidence 45679999999987664332222 22688999999999873 233344444555678753 699999
Q ss_pred CC
Q 011910 232 DH 233 (475)
Q Consensus 232 ~~ 233 (475)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 83
No 370
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.06 E-value=9.9e-06 Score=73.18 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=58.7
Q ss_pred CCCCc-CcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHH
Q 011910 167 APGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 245 (475)
Q Consensus 167 tPGh~-~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i 245 (475)
-|||. +.+.++...+..||++++|+|+..+.. ......+..+ .+.| +++|+||+|+... .....
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~-------~~~~~i~~~~--~~k~-~ilVlNK~Dl~~~----~~~~~- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS-------SRNPLLEKIL--GNKP-RIIVLNKADLADP----KKTKK- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC-------cCChhhHhHh--cCCC-EEEEEehhhcCCh----HHHHH-
Confidence 37774 456777778899999999999987643 1222222222 3566 7899999999421 11111
Q ss_pred HhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 246 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 246 ~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
...+++.. ..+++++||++|.|+.++..
T Consensus 67 ---~~~~~~~~------~~~vi~iSa~~~~gi~~L~~ 94 (171)
T cd01856 67 ---WLKYFESK------GEKVLFVNAKSGKGVKKLLK 94 (171)
T ss_pred ---HHHHHHhc------CCeEEEEECCCcccHHHHHH
Confidence 11222221 23689999999999998643
No 371
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=3.3e-05 Score=76.50 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=88.5
Q ss_pred cCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 77 ~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
...--..++.++|..|.|||||+|.|..+.-. .++ -.............+......++
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~-~~~---------------------~~~~~~~~~~~t~~i~~~~~~ie 73 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLS-GNR---------------------EVPGASERIKETVEIESTKVEIE 73 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHHHHhhhcc-CCc---------------------ccCCcccCccccceeeeeeeeec
Confidence 33444579999999999999999998655111 000 00111222223344444444444
Q ss_pred eCC--eeEEEEeCCCCcCcHHHHh-----------------h--------ccc--cCCEEEEEEecC-CCccccccCCCc
Q 011910 157 TET--TRFTILDAPGHKSYVPNMI-----------------S--------GAS--QADIGVLVISAR-KGEFETGFEKGG 206 (475)
Q Consensus 157 ~~~--~~~~liDtPGh~~f~~~~~-----------------~--------~~~--~~D~~vlVVda~-~g~~e~~~~~~~ 206 (475)
-++ -+++++||||..+++++.. . ... ..++|++.|... +|+. +
T Consensus 74 e~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~-------p 146 (366)
T KOG2655|consen 74 ENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLK-------P 146 (366)
T ss_pred CCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCc-------H
Confidence 444 4589999999876633311 0 111 478999999865 3432 3
Q ss_pred chHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcC
Q 011910 207 QTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (475)
Q Consensus 207 ~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~ 258 (475)
...+.++.+ ...+. +|-||-|.|..+ ...+...+..+...+...++
T Consensus 147 ~Di~~Mk~l-~~~vN-iIPVI~KaD~lT----~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 147 LDIEFMKKL-SKKVN-LIPVIAKADTLT----KDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred hhHHHHHHH-hcccc-ccceeeccccCC----HHHHHHHHHHHHHHHHHcCc
Confidence 444444433 24666 889999999854 34566777777777766543
No 372
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.00 E-value=4.5e-05 Score=61.52 Aligned_cols=66 Identities=23% Similarity=0.426 Sum_probs=50.9
Q ss_pred cCCeEEEEEEEEeeEecCCeEEecC---------CCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCcee
Q 011910 322 DMGTVVMGKVESGSVREGDSLLVMP---------NKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (475)
Q Consensus 322 ~~G~v~~g~v~~G~l~~gd~v~i~p---------~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (475)
..|..+++||++|+|+.||.+.+.. .....+|..|+.. ..++++|.|||+|++ .|++ +++.|+
T Consensus 14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g~~--~~~~g~ 89 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI--VGLD--QLKSGT 89 (93)
T ss_pred CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE--ECCc--cCceEe
Confidence 4688999999999999999998765 2234677787664 468899999999996 4543 367888
Q ss_pred EEe
Q 011910 389 VLS 391 (475)
Q Consensus 389 vl~ 391 (475)
+.+
T Consensus 90 ~~~ 92 (93)
T cd03700 90 TAT 92 (93)
T ss_pred Eec
Confidence 754
No 373
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.00 E-value=1.3e-05 Score=76.78 Aligned_cols=84 Identities=21% Similarity=0.223 Sum_probs=55.7
Q ss_pred ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCc
Q 011910 180 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (475)
Q Consensus 180 ~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 259 (475)
.++.+|.+++|+|+..+.+ .+ ....+.+..+...++| +++|+||+|+... .+ ...+....++..|
T Consensus 33 ~~~n~D~viiV~d~~~p~~--s~---~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~--~~-----~~~~~~~~~~~~g-- 97 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPEL--SL---NQLDRFLVVAEAQNIE-PIIVLNKIDLLDD--ED-----MEKEQLDIYRNIG-- 97 (245)
T ss_pred ccccCCEEEEEEECCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEECcccCCC--HH-----HHHHHHHHHHHCC--
Confidence 5788999999999987542 11 2445555566667888 8899999999421 11 1111122333333
Q ss_pred ccCCeeEEEeecccccccccccc
Q 011910 260 VKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 260 ~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.+++.+||++|.|+.+++.
T Consensus 98 ----~~v~~~SAktg~gi~eLf~ 116 (245)
T TIGR00157 98 ----YQVLMTSSKNQDGLKELIE 116 (245)
T ss_pred ----CeEEEEecCCchhHHHHHh
Confidence 4799999999999988643
No 374
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.00 E-value=7.4e-06 Score=74.01 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=39.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|.+|+|||||+++|...... ......|+|.......+ +.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~------------------------------~~~~~pg~T~~~~~~~~---~~ 162 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRAC------------------------------NVGATPGVTKSMQEVHL---DK 162 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccc------------------------------eecCCCCeEcceEEEEe---CC
Confidence 3468999999999999999999532211 01123677776544433 34
Q ss_pred eEEEEeCCCC
Q 011910 161 RFTILDAPGH 170 (475)
Q Consensus 161 ~~~liDtPGh 170 (475)
.+.++||||.
T Consensus 163 ~~~l~DtPGi 172 (172)
T cd04178 163 KVKLLDSPGI 172 (172)
T ss_pred CEEEEECcCC
Confidence 6899999994
No 375
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=2.2e-05 Score=79.08 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=41.0
Q ss_pred eCCeeEEEEeCCCCcC---cHHHHhhccc---cCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---------CCc
Q 011910 157 TETTRFTILDAPGHKS---YVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---------GVT 221 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~---f~~~~~~~~~---~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---------~i~ 221 (475)
+.++.+.||||||... +..+.+..+. .++-.+||++|+.+. ....+.+...... ++.
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--------~~l~evi~~f~~~~~~p~~~~~~~~ 284 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--------DTLNEVVQAYRSAAGQPKAALPDLA 284 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--------HHHHHHHHHHHHhhcccccccCCCC
Confidence 3567899999999763 3434444443 345669999999873 2333344433333 234
Q ss_pred eEEEEEEccCC
Q 011910 222 KLLLVVNKMDD 232 (475)
Q Consensus 222 ~iivviNKiD~ 232 (475)
. +++||+|-
T Consensus 285 ~--~I~TKlDE 293 (374)
T PRK14722 285 G--CILTKLDE 293 (374)
T ss_pred E--EEEecccc
Confidence 3 46899997
No 376
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.96 E-value=8.2e-05 Score=71.60 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=46.8
Q ss_pred HcCCceEEEEEEccCC-----CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 217 TLGVTKLLLVVNKMDD-----HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 217 ~~~i~~iivviNKiD~-----~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.+|+| ++||++|+|. ...+|..+.|+.+...++.|+-++|- ..|.+|++...|++-|
T Consensus 220 NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga------aLiyTSvKE~KNidll 281 (473)
T KOG3905|consen 220 NLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA------ALIYTSVKETKNIDLL 281 (473)
T ss_pred cCCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc------eeEEeecccccchHHH
Confidence 45777 8999999997 23467888899999999999888763 6899999999998753
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.96 E-value=5.9e-05 Score=68.16 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=40.6
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhc------cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~------~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
.++.+.|+||||...+-...+.. ...+|.+++|+|+..+. ........+....++. -+++||+|
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--------~~~~~~~~~~~~~~~~--~viltk~D 150 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--------DAVNQAKAFNEALGIT--GVILTKLD 150 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--------HHHHHHHHHHhhCCCC--EEEEECCc
Confidence 35678999999986543222222 12489999999997542 1222333333445654 46789999
Q ss_pred C
Q 011910 232 D 232 (475)
Q Consensus 232 ~ 232 (475)
.
T Consensus 151 ~ 151 (173)
T cd03115 151 G 151 (173)
T ss_pred C
Confidence 8
No 378
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=1.8e-05 Score=79.42 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=43.6
Q ss_pred CeeEEEEeCCCCcCc----HHHHhhcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f----~~~~~~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
++.+.||||||.... +.++...+ ..+|-++||+||+.+- ....+.+......++.. +++||+|-
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~idg--lI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCCE--EEEEcccC
Confidence 467999999997553 33333322 3578899999987552 23456666666677775 47999997
No 379
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.92 E-value=4.6e-05 Score=67.12 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=39.2
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
.++.+.||||||.. ......+..||.+|+|+....+ .....++. ..+..-. +++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~----------D~y~~~k~-~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG----------DDIQAIKA-GIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch----------hHHHHhhh-hHhhhcC-EEEEeCCC
Confidence 36789999999965 3334577899999999987743 22222222 2333343 57999998
No 380
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.91 E-value=2.6e-05 Score=76.19 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=57.5
Q ss_pred CCCcC-cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHH
Q 011910 168 PGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 246 (475)
Q Consensus 168 PGh~~-f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~ 246 (475)
|||.. -.+++...+..+|++|+|+||..+.. .........+ .+.| +|+|+||+|+. + .......
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~-------~~~~~i~~~l--~~kp-~IiVlNK~DL~--~--~~~~~~~- 69 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS-------SRNPMIDEIR--GNKP-RLIVLNKADLA--D--PAVTKQW- 69 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------CCChhHHHHH--CCCC-EEEEEEccccC--C--HHHHHHH-
Confidence 78854 46666777889999999999987643 1222222222 2566 88999999993 2 1111111
Q ss_pred hhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 247 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 247 ~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
...++.. ..+++++||.+|.|+.++.
T Consensus 70 ---~~~~~~~------~~~vi~iSa~~~~gi~~L~ 95 (276)
T TIGR03596 70 ---LKYFEEK------GIKALAINAKKGKGVKKII 95 (276)
T ss_pred ---HHHHHHc------CCeEEEEECCCcccHHHHH
Confidence 1122222 2368999999999998854
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=97.91 E-value=3.2e-05 Score=77.74 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=55.7
Q ss_pred cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcc
Q 011910 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (475)
Q Consensus 181 ~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 260 (475)
++.+|.+++|+|+.++.+. .....+.+..+...++| +|+|+||+|+. + ....+ .+...+..+|
T Consensus 87 ~aNvD~vLlV~d~~~p~~~-----~~~LdR~L~~a~~~~ip-~ILVlNK~DLv--~--~~~~~----~~~~~~~~~g--- 149 (352)
T PRK12289 87 VANADQILLVFALAEPPLD-----PWQLSRFLVKAESTGLE-IVLCLNKADLV--S--PTEQQ----QWQDRLQQWG--- 149 (352)
T ss_pred hhcCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEchhcC--C--hHHHH----HHHHHHHhcC---
Confidence 6789999999999865421 01335566666667888 88999999994 2 11121 2223334444
Q ss_pred cCCeeEEEeecccccccccccc
Q 011910 261 KKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l~~ 282 (475)
++++++||++|.|+.+|..
T Consensus 150 ---~~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 150 ---YQPLFISVETGIGLEALLE 168 (352)
T ss_pred ---CeEEEEEcCCCCCHHHHhh
Confidence 3689999999999988654
No 382
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.89 E-value=2.9e-05 Score=68.87 Aligned_cols=77 Identities=26% Similarity=0.242 Sum_probs=48.2
Q ss_pred CEEEEEEecCCCccccccCCCcchHHHH-HHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCC
Q 011910 185 DIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKD 263 (475)
Q Consensus 185 D~~vlVVda~~g~~e~~~~~~~~t~~~l-~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 263 (475)
|++|+|+|+..+.. ....... ..+...+.| +|+|+||+|+.. ++..... +.. +.... .
T Consensus 1 Dvvl~VvD~~~p~~-------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~----~~~~~~~---~~~-~~~~~-----~ 59 (155)
T cd01849 1 DVILEVLDARDPLG-------TRSPDIERVLIKEKGKK-LILVLNKADLVP----KEVLRKW---LAY-LRHSY-----P 59 (155)
T ss_pred CEEEEEEeccCCcc-------ccCHHHHHHHHhcCCCC-EEEEEechhcCC----HHHHHHH---HHH-HHhhC-----C
Confidence 78999999987643 2233333 345556788 899999999932 1111111 111 12111 2
Q ss_pred eeEEEeecccccccccccc
Q 011910 264 VQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 264 ~~iipiSa~~g~gi~~l~~ 282 (475)
.+++++||++|.|+.++.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 60 TIPFKISATNGQGIEKKES 78 (155)
T ss_pred ceEEEEeccCCcChhhHHH
Confidence 3689999999999988643
No 383
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.89 E-value=7.3e-06 Score=72.59 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..++++|+.|+|||||+|.|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 67899999999999999999654
No 384
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.89 E-value=1.3e-05 Score=71.05 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
...+++++|++++|||||++.|+.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~ 122 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLN 122 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHc
Confidence 457899999999999999999954
No 385
>PRK00098 GTPase RsgA; Reviewed
Probab=97.86 E-value=3.5e-05 Score=76.01 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=54.4
Q ss_pred cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcc
Q 011910 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (475)
Q Consensus 181 ~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 260 (475)
++.+|.+++|+|+....+. .....+.+..+...++| +++|+||+|+.. + ..... .+...++..+
T Consensus 78 aaniD~vllV~d~~~p~~~-----~~~idr~L~~~~~~~ip-~iIVlNK~DL~~-~--~~~~~----~~~~~~~~~g--- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS-----TDLLDRFLVLAEANGIK-PIIVLNKIDLLD-D--LEEAR----ELLALYRAIG--- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEhHHcCC-C--HHHHH----HHHHHHHHCC---
Confidence 6789999999999765421 12234455556677888 889999999931 1 11111 2222333333
Q ss_pred cCCeeEEEeeccccccccccc
Q 011910 261 KKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l~ 281 (475)
.+++++||++|.|+.++.
T Consensus 142 ---~~v~~vSA~~g~gi~~L~ 159 (298)
T PRK00098 142 ---YDVLELSAKEGEGLDELK 159 (298)
T ss_pred ---CeEEEEeCCCCccHHHHH
Confidence 479999999999998864
No 386
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.00014 Score=71.25 Aligned_cols=131 Identities=21% Similarity=0.212 Sum_probs=81.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCc--cchhhhhhccCchhhhhcceEEeeee-eEEee--
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGR-AHFET-- 157 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~g~ti~~~~-~~~~~-- 157 (475)
+-|.++|.-..||||+++.|+...-. . ...|. +.-.+..+|-...++...|.+.-+.. ..|.-
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dyp----g--------~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~ 126 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYP----G--------LRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLN 126 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCC----c--------cccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhh
Confidence 56899999999999999999754321 0 01111 11122233444444444444443321 11110
Q ss_pred ---------------CC---eeEEEEeCCCCc-----------CcHHHHhhccccCCEEEEEEecCCCccccccCCCcch
Q 011910 158 ---------------ET---TRFTILDAPGHK-----------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT 208 (475)
Q Consensus 158 ---------------~~---~~~~liDtPGh~-----------~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t 208 (475)
.+ ..++|+||||.- +|..-..-.+..||.++|+.|+..-. ....+
T Consensus 127 ~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD------IsdEf 200 (532)
T KOG1954|consen 127 KFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD------ISDEF 200 (532)
T ss_pred hhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc------ccHHH
Confidence 11 249999999963 33333333466899999999997643 23678
Q ss_pred HHHHHHHHHcCCceEEEEEEccCC
Q 011910 209 REHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 209 ~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
++.+..++...-+ +=||+||.|.
T Consensus 201 ~~vi~aLkG~Edk-iRVVLNKADq 223 (532)
T KOG1954|consen 201 KRVIDALKGHEDK-IRVVLNKADQ 223 (532)
T ss_pred HHHHHHhhCCcce-eEEEeccccc
Confidence 8888888776655 7789999998
No 387
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.76 E-value=0.00014 Score=75.62 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=44.2
Q ss_pred CCceEEEEEEccCCC-----CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 219 GVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 219 ~i~~iivviNKiD~~-----~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
|+| ++||++|.|.. ..+|.++.|+.+...|+.++-+.|. ..|.+|.+...|+.-|
T Consensus 196 Gip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA------sL~yts~~~~~n~~~L 255 (472)
T PF05783_consen 196 GIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA------SLIYTSVKEEKNLDLL 255 (472)
T ss_pred Ccc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC------eEEEeeccccccHHHH
Confidence 678 99999999962 2358888999999999988877754 5888999888887653
No 388
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.75 E-value=0.00025 Score=57.24 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=47.4
Q ss_pred EEEEEEE--ccC-CeEEEEEEEEeeEecCCeEEecCCC---------CeEEEEEEEEC----CccceeeCCCCEEEEEec
Q 011910 314 MPIIDKF--KDM-GTVVMGKVESGSVREGDSLLVMPNK---------AQVKVLAIYCD----DNRVRHAGPGENLRIRLS 377 (475)
Q Consensus 314 ~~v~~~~--~~~-G~v~~g~v~~G~l~~gd~v~i~p~~---------~~~~V~si~~~----~~~v~~a~aG~~v~i~l~ 377 (475)
+.|+.+. +.. |...+|||++|+|+.||.|.+...+ ...+|..|+.. ..++++|.|||+|++ .
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v--~ 80 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI--K 80 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE--E
Confidence 3445544 233 5579999999999999999874321 24677788764 468999999999995 5
Q ss_pred cCCc
Q 011910 378 GIEE 381 (475)
Q Consensus 378 ~~~~ 381 (475)
|++.
T Consensus 81 gl~~ 84 (94)
T cd04090 81 GIDS 84 (94)
T ss_pred Ccch
Confidence 5543
No 389
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.74 E-value=2.9e-05 Score=71.29 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=39.5
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+++++|.+|+|||||+|+|+........ ..+ ........|.|.+.....+. ..+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~-----------~~~-----------~~~~~~~~gtT~~~~~~~~~---~~~ 182 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKK-----------LKD-----------LLTTSPIPGTTLDLIKIPLG---NGK 182 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccc-----------ccc-----------ccccCCCCCeeeeeEEEecC---CCC
Confidence 57999999999999999999643321000 000 00111235777776555442 258
Q ss_pred EEEeCCCC
Q 011910 163 TILDAPGH 170 (475)
Q Consensus 163 ~liDtPGh 170 (475)
.|+||||.
T Consensus 183 ~~~DtPG~ 190 (190)
T cd01855 183 KLYDTPGI 190 (190)
T ss_pred EEEeCcCC
Confidence 99999994
No 390
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.73 E-value=3e-05 Score=67.61 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=19.4
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|.+|+|||||+++|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999953
No 391
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=6.1e-05 Score=69.58 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=101.0
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|.++|+--+|||++-....+..... . +.-.|....+|.+. +...=..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn--e------------------------TlflESTski~~d~----is~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN--E------------------------TLFLESTSKITRDH----ISNSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC--c------------------------eeEeeccCcccHhh----hhhhhcce
Confidence 459999999999999987653332211 0 01111111122111 11112458
Q ss_pred EEEeCCCCcCcHHHHhh---ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCc---eEEEEEEccCCCCCC
Q 011910 163 TILDAPGHKSYVPNMIS---GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNKMDDHTVN 236 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~---~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~---~iivviNKiD~~~~~ 236 (475)
.+||.||+.+|..-... -.+.+-+.|+||||...-++ .-++-|+..+++.++. .+=|.|-|+|-...+
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~e------ala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYME------ALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHH------HHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 89999999988655433 24678889999999887653 5677788787777543 277899999987777
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG 274 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g 274 (475)
+.-+....+.++...-|+..|.. +-.+.+..+|-...
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle-~v~vsf~LTSIyDH 188 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLE-KVQVSFYLTSIYDH 188 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhc-cceEEEEEeeecch
Confidence 66666777778888888888765 23455666665443
No 392
>PRK12288 GTPase RsgA; Reviewed
Probab=97.72 E-value=3.3e-05 Score=77.58 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.6
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.++|+|.+|+|||||+|+|+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc
Confidence 4899999999999999999643
No 393
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.70 E-value=5.3e-05 Score=67.49 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.4
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.+.++|..|||||||+.+|+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4689999999999999998754
No 394
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.0002 Score=73.44 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=42.9
Q ss_pred eCCeeEEEEeCCCCcCcHHHH---h---hccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEcc
Q 011910 157 TETTRFTILDAPGHKSYVPNM---I---SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~---~---~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKi 230 (475)
..++.+.+|||+|........ + .......-.+||+||+.+. ....+.+......++.. +++||+
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--------~~~~~~~~~f~~~~~~~--~I~TKl 336 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--------DTLDEVISAYQGHGIHG--CIITKV 336 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEee
Confidence 356789999999976643322 1 2223356788999998652 23444455555567775 479999
Q ss_pred CC
Q 011910 231 DD 232 (475)
Q Consensus 231 D~ 232 (475)
|-
T Consensus 337 DE 338 (420)
T PRK14721 337 DE 338 (420)
T ss_pred eC
Confidence 97
No 395
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.69 E-value=8.2e-05 Score=73.04 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=58.0
Q ss_pred CCCCcCc-HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHH
Q 011910 167 APGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 245 (475)
Q Consensus 167 tPGh~~f-~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i 245 (475)
-|||..- .+++...+..+|++|+|+|+..+.. .......... .+.| +++|+||+|+. + ....+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~-------~~~~~l~~~~--~~kp-~iiVlNK~DL~--~--~~~~~~- 71 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS-------SENPMIDKII--GNKP-RLLILNKSDLA--D--PEVTKK- 71 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------CCChhHHHHh--CCCC-EEEEEEchhcC--C--HHHHHH-
Confidence 4787543 5556667889999999999987642 2222222222 2666 88999999993 2 111111
Q ss_pred HhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 246 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 246 ~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
...++... ..+++++||.++.|+..+..
T Consensus 72 ---~~~~~~~~------~~~vi~vSa~~~~gi~~L~~ 99 (287)
T PRK09563 72 ---WIEYFEEQ------GIKALAINAKKGQGVKKILK 99 (287)
T ss_pred ---HHHHHHHc------CCeEEEEECCCcccHHHHHH
Confidence 12222222 24689999999999988643
No 396
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.68 E-value=0.00023 Score=71.51 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=74.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchH------HHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeE
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 154 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~ 154 (475)
+...|++||++|+||||.+-.|.......... ++..|+=.+.+.- ..|+.+| |+.+......
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL---k~Ya~im---------~vp~~vv~~~ 269 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL---KTYADIM---------GVPLEVVYSP 269 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH---HHHHHHh---------CCceEEecCH
Confidence 46789999999999999999886544311100 0000000000000 0122222 3333332211
Q ss_pred -------EeeCCeeEEEEeCCCCcCcHHHHhhc----cc--cCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCc
Q 011910 155 -------FETETTRFTILDAPGHKSYVPNMISG----AS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 221 (475)
Q Consensus 155 -------~~~~~~~~~liDtPGh~~f~~~~~~~----~~--~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~ 221 (475)
.....+.+.|+||.|+..+-...+.. +. ...-.-||++|+.-- .-.++.+......++.
T Consensus 270 ~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--------~dlkei~~~f~~~~i~ 341 (407)
T COG1419 270 KELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--------EDLKEIIKQFSLFPID 341 (407)
T ss_pred HHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--------HHHHHHHHHhccCCcc
Confidence 12246789999999987663332222 22 345667888887542 3566777777778888
Q ss_pred eEEEEEEccCCC
Q 011910 222 KLLLVVNKMDDH 233 (475)
Q Consensus 222 ~iivviNKiD~~ 233 (475)
.+ .+||+|-.
T Consensus 342 ~~--I~TKlDET 351 (407)
T COG1419 342 GL--IFTKLDET 351 (407)
T ss_pred ee--EEEccccc
Confidence 64 58999974
No 397
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.67 E-value=0.00021 Score=73.77 Aligned_cols=63 Identities=24% Similarity=0.429 Sum_probs=40.5
Q ss_pred CeeEEEEeCCCCcCcHHHH------hhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEEccC
Q 011910 159 TTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 231 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~------~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviNKiD 231 (475)
.+.+.||||||...+-..+ +..+..+|.++||+|+..|. ...+.+.... ..++. -+++||+|
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---------~av~~a~~F~~~l~i~--gvIlTKlD 243 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---------QAKNQAKAFHEAVGIG--GIIITKLD 243 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---------HHHHHHHHHHhcCCCC--EEEEeccc
Confidence 3479999999976653332 23345789999999998762 2333333322 23443 46789999
Q ss_pred C
Q 011910 232 D 232 (475)
Q Consensus 232 ~ 232 (475)
-
T Consensus 244 ~ 244 (437)
T PRK00771 244 G 244 (437)
T ss_pred C
Confidence 6
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00028 Score=71.82 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=43.6
Q ss_pred CCeeEEEEeCCCCcCc----HHHHh---hcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 158 ETTRFTILDAPGHKSY----VPNMI---SGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f----~~~~~---~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
.++.+.||||||.... +..+. ... ....-.+||+||+.+. ....+.+......++.. +++|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~g--lIlT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYRR--ILLT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCCE--EEEE
Confidence 4678999999997643 22222 211 1245689999999873 25556666666678875 4799
Q ss_pred ccCC
Q 011910 229 KMDD 232 (475)
Q Consensus 229 KiD~ 232 (475)
|+|-
T Consensus 368 KLDE 371 (432)
T PRK12724 368 KLDE 371 (432)
T ss_pred cccC
Confidence 9997
No 399
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.66 E-value=6.1e-05 Score=68.29 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=42.1
Q ss_pred eeEEEEeCCCC------cCcHHHHhhcccc---CCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEcc
Q 011910 160 TRFTILDAPGH------KSYVPNMISGASQ---ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (475)
Q Consensus 160 ~~~~liDtPGh------~~f~~~~~~~~~~---~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKi 230 (475)
-.+.++|+||+ ...+++.+..+.+ -=++++++|+.--+--+-|- .-..-.+.....+.+|+ |=|++||
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~Kfi--SG~lsAlsAMi~lE~P~-INvlsKM 174 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFI--SGCLSALSAMISLEVPH-INVLSKM 174 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHH--HHHHHHHHHHHHhcCcc-hhhhhHH
Confidence 34889999995 4446777666554 23577788765321000000 11222344455678995 6799999
Q ss_pred CCC
Q 011910 231 DDH 233 (475)
Q Consensus 231 D~~ 233 (475)
|+.
T Consensus 175 DLl 177 (273)
T KOG1534|consen 175 DLL 177 (273)
T ss_pred HHh
Confidence 984
No 400
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.65 E-value=6.6e-05 Score=67.76 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..++++++|.+++|||||+++|..
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999953
No 401
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.65 E-value=0.00013 Score=71.65 Aligned_cols=80 Identities=20% Similarity=0.146 Sum_probs=53.2
Q ss_pred cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcc
Q 011910 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (475)
Q Consensus 181 ~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 260 (475)
++.+|.+++|+|+..+.+. + ....+.+..+...++| +++|+||+|+... .+ . .. ........
T Consensus 76 ~anvD~vllV~d~~~p~~s--~---~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~--~~-~----~~-~~~~~~~~---- 137 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN--P---RLLDRYLVAAEAAGIE-PVIVLTKADLLDD--EE-E----EL-ELVEALAL---- 137 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC--H---HHHHHHHHHHHHcCCC-EEEEEEHHHCCCh--HH-H----HH-HHHHHHhC----
Confidence 6789999999999877421 0 2344556666777888 8899999999422 11 0 01 11112222
Q ss_pred cCCeeEEEeecccccccccc
Q 011910 261 KKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l 280 (475)
..+++++||++|.|+++|
T Consensus 138 --g~~v~~vSA~~g~gi~~L 155 (287)
T cd01854 138 --GYPVLAVSAKTGEGLDEL 155 (287)
T ss_pred --CCeEEEEECCCCccHHHH
Confidence 347999999999999875
No 402
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.62 E-value=6e-05 Score=72.21 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..++++|++|+|||||+|+|+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 47899999999999999999643
No 403
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.62 E-value=0.00073 Score=72.61 Aligned_cols=181 Identities=17% Similarity=0.237 Sum_probs=124.2
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE-ccCCCCCCchHHH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKER 241 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN-KiD~~~~~~~~~~ 241 (475)
.=-|+-|...-+.+.+..+...+.-+=|+.+.-| +-++..+.++...+. +|++.| |++.
T Consensus 390 ikad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG---------~i~~~Dv~~a~~~~a--~i~~Fnv~~~~--------- 449 (587)
T TIGR00487 390 LKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVG---------GITETDISLASASNA--IIIGFNVRPDA--------- 449 (587)
T ss_pred EEeCCcchHHHHHHHHHhhcccCCeEEEEEeecC---------CCchhhHHHHHhcCC--EEEEEecCCCH---------
Confidence 3358888877777888888778888899998877 467888888877763 566776 4442
Q ss_pred HHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEEEc
Q 011910 242 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK 321 (475)
Q Consensus 242 ~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~~~ 321 (475)
.++...++. .++++.-+- |-+|++. +.+.+..+-.|......--+..|..+|+
T Consensus 450 ------~~~~~a~~~------~v~i~~~~i-----IY~l~d~----------~~~~~~~~~~~~~~~~~~g~a~v~~vf~ 502 (587)
T TIGR00487 450 ------TAKNVAEAE------NVDIRYYSV-----IYKLIDE----------IRAAMKGMLDPEYEEEIIGQAEVRQVFN 502 (587)
T ss_pred ------HHHHHHHHc------CCeEEEeCh-----HHHHHHH----------HHHHHHhccCcceeeEeeeeEEEEEEEe
Confidence 122223333 234433211 2222221 3334443333332222233566777885
Q ss_pred --cCCeEEEEEEEEeeEecCCeEEecCCCC---eEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 322 --DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 322 --~~G~v~~g~v~~G~l~~gd~v~i~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
..|.++.++|..|+|+.|..+.+...+. ..+|.||+++++++.++..|+-|++.+.+. .+++.||+|-.
T Consensus 503 ~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~ 576 (587)
T TIGR00487 503 VPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIEA 576 (587)
T ss_pred cCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEEE
Confidence 4589999999999999999999988764 357999999999999999999999999976 67999999854
No 404
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.60 E-value=0.0012 Score=72.36 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=125.6
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE-ccCCCCCCchHHH
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKER 241 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN-KiD~~~~~~~~~~ 241 (475)
.=-|+-|...-+...+..+....+-+=|+.+.-| +-+...+.++...+. +|+.+| |++.
T Consensus 547 iKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG---------~it~~Dv~lA~~~~a--~ii~Fnv~~~~--------- 606 (742)
T CHL00189 547 IKTDTQGSIEAIINSISQIPQKKVQLNILYASLG---------EVTETDVEFASTTNA--EILAFNTNLAP--------- 606 (742)
T ss_pred EEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecC---------CCCHHHHHHHHhcCC--EEEEeeCCCCH---------
Confidence 3468999888888888888777888999998887 467888888887764 566776 3332
Q ss_pred HHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEEEc
Q 011910 242 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK 321 (475)
Q Consensus 242 ~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~~~ 321 (475)
.++...+.. .+.+..-+- |-+|++. +.+++..+-.|.......-++.|..+|+
T Consensus 607 ------~~~~~a~~~------~v~i~~~~i-----IY~lid~----------~~~~~~~~l~~~~~~~~~g~a~v~~vF~ 659 (742)
T CHL00189 607 ------GAKKAARKL------NIIIKEYQV-----IYDLLEY----------IEALMEDLLDPEYKKVPIGEAEVKTVFP 659 (742)
T ss_pred ------HHHHHHHHc------CCEEEEeCh-----HHHHHHH----------HHHHHhhccCceeeeeeceeEEeeEEEe
Confidence 112222322 233433211 2222221 3334444333333333334666778884
Q ss_pred -cCCeEEEEEEEEeeEecCCeEEecCCCC---eEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 322 -DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 322 -~~G~v~~g~v~~G~l~~gd~v~i~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
..|.++.++|.+|.|+.|..+.+...+. ..+|.||.+++.++.++..|+-|+|.+.+. .+++.||+|-.
T Consensus 660 ~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie~ 732 (742)
T CHL00189 660 LAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIHA 732 (742)
T ss_pred cCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEEE
Confidence 3489999999999999999999988875 357999999999999999999999999975 56999999854
No 405
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.60 E-value=6.2e-05 Score=75.00 Aligned_cols=58 Identities=26% Similarity=0.324 Sum_probs=40.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..++.++|-+|+|||||+|+|+...... ..+..|+|-........
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~------------------------------~s~~PG~Tk~~q~i~~~--- 176 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAK------------------------------TSNRPGTTKGIQWIKLD--- 176 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhccccee------------------------------eCCCCceecceEEEEcC---
Confidence 345779999999999999999996544321 11224676665544433
Q ss_pred eeEEEEeCCCC
Q 011910 160 TRFTILDAPGH 170 (475)
Q Consensus 160 ~~~~liDtPGh 170 (475)
..+.|+||||.
T Consensus 177 ~~i~LlDtPGi 187 (322)
T COG1161 177 DGIYLLDTPGI 187 (322)
T ss_pred CCeEEecCCCc
Confidence 34999999995
No 406
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.59 E-value=8.9e-05 Score=72.80 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=39.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|.+|+|||||+|+|...... ......|+|........ +.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~~ 166 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIA------------------------------KTGNRPGVTKAQQWIKL---GK 166 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcc------------------------------ccCCCCCeEEEEEEEEe---CC
Confidence 4568999999999999999999532110 00112566766543222 35
Q ss_pred eEEEEeCCCCc
Q 011910 161 RFTILDAPGHK 171 (475)
Q Consensus 161 ~~~liDtPGh~ 171 (475)
.+.|+||||..
T Consensus 167 ~~~l~DtPGi~ 177 (287)
T PRK09563 167 GLELLDTPGIL 177 (287)
T ss_pred cEEEEECCCcC
Confidence 68999999963
No 407
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.59 E-value=8.9e-05 Score=71.75 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=19.1
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..+++|++|+|||||+|+|+-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 679999999999999999953
No 408
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.58 E-value=8e-05 Score=72.71 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll 103 (475)
...+++++|.+|+|||||+++|.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~ 139 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLA 139 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999999995
No 409
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00026 Score=73.85 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=39.4
Q ss_pred CCeeEEEEeCCCCcCcHHHH------hhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 158 ETTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~------~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
.++.+.||||||...+-... +... .....+||+++..+. ....+.+......+. .-+++||+|
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~--------~Dl~eii~~f~~~~~--~gvILTKlD 495 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHF--------SDLDEVVRRFAHAKP--QGVVLTKLD 495 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCCh--------hHHHHHHHHHHhhCC--eEEEEecCc
Confidence 46789999999975432221 1221 234578889987653 234445555554444 347899999
Q ss_pred C
Q 011910 232 D 232 (475)
Q Consensus 232 ~ 232 (475)
.
T Consensus 496 E 496 (559)
T PRK12727 496 E 496 (559)
T ss_pred C
Confidence 7
No 410
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00018 Score=72.06 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=38.7
Q ss_pred CeeEEEEeCCCCcCcHHHHh----hcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSYVPNMI----SGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~----~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
++.+.||||||...+-...+ ... ..+|..+||+++.... .+..+.+......++.. +++||+|-
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--------~d~~~i~~~f~~l~i~g--lI~TKLDE 354 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--------ADVMTILPKLAEIPIDG--FIITKMDE 354 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--------HHHHHHHHhcCcCCCCE--EEEEcccC
Confidence 57899999999855433322 222 2457778888874331 13333333344456663 57999997
No 411
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00042 Score=70.48 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=42.6
Q ss_pred CCeeEEEEeCCCCcCcH----HHHhhccc--cCC-EEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSYV----PNMISGAS--QAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~----~~~~~~~~--~~D-~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKi 230 (475)
.++.+.||||||....- ..+...+. .++ -.+||+||+.+. ....+.+......++.. +++||+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--------~~~~~~~~~~~~~~~~~--~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--------SDVKEIFHQFSPFSYKT--VIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEec
Confidence 56789999999975432 22222222 223 689999999873 24455555555567775 479999
Q ss_pred CC
Q 011910 231 DD 232 (475)
Q Consensus 231 D~ 232 (475)
|-
T Consensus 323 De 324 (388)
T PRK12723 323 DE 324 (388)
T ss_pred cC
Confidence 97
No 412
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.57 E-value=0.00019 Score=73.98 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=40.6
Q ss_pred CCeeEEEEeCCCCcCcHHHHhh------ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSYVPNMIS------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~------~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviNKi 230 (475)
.++.+.|+||||...+-...+. ....+|.++||+|+..| ....+.+.... ..++.. +++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---------q~~~~~a~~f~~~v~i~g--iIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---------QDAVNTAKTFNERLGLTG--VVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---------HHHHHHHHHHHhhCCCCE--EEEeCc
Confidence 4567999999996543222222 13358999999999865 23444444333 346653 569999
Q ss_pred CC
Q 011910 231 DD 232 (475)
Q Consensus 231 D~ 232 (475)
|-
T Consensus 250 D~ 251 (428)
T TIGR00959 250 DG 251 (428)
T ss_pred cC
Confidence 95
No 413
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.57 E-value=0.0015 Score=72.23 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=123.4
Q ss_pred EeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE-ccCCCCCCchHHHHH
Q 011910 165 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERYD 243 (475)
Q Consensus 165 iDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN-KiD~~~~~~~~~~~~ 243 (475)
-|+-|...-+...+..+..-++-+=|+.+.-| .-+...+.++...+. +|+.+| |++.
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG---------~it~~Dv~la~~~~a--~ii~Fnv~~~~----------- 651 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVG---------AITESDVTLAAASNA--IIIGFNVRPDA----------- 651 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccC---------CCCHHHHHHHHhcCC--EEEEEcCCCCH-----------
Confidence 58888887788888888888888999998877 467778888877663 566776 4432
Q ss_pred HHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEEEc--
Q 011910 244 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK-- 321 (475)
Q Consensus 244 ~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~~~-- 321 (475)
.+....+.. .+.+..-+- |-+|++. +..++..+-.|.....-.-...|..+|+
T Consensus 652 ----~~~~~a~~~------~v~i~~~~i-----IY~l~d~----------~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~ 706 (787)
T PRK05306 652 ----KARKLAEQE------GVDIRYYSI-----IYDLIDD----------VKAAMSGMLEPEYEEEIIGQAEVREVFKVS 706 (787)
T ss_pred ----HHHHHHHHc------CCEEEEeCh-----HHHHHHH----------HHHHHhhccCchhheeeeeeEEEEEEEecC
Confidence 112222222 233433221 1122111 2333333333332222223566778884
Q ss_pred cCCeEEEEEEEEeeEecCCeEEecCCCC---eEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 322 DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 322 ~~G~v~~g~v~~G~l~~gd~v~i~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
..|.++.++|..|.|+.|..+.+...+. ..+|.||.++..+|.++..|+-|+|.+.+. .+++.||+|-.
T Consensus 707 k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie~ 778 (787)
T PRK05306 707 KVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIEA 778 (787)
T ss_pred CCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEEE
Confidence 4699999999999999999999998775 468999999999999999999999999976 57999999853
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.56 E-value=0.00032 Score=65.09 Aligned_cols=64 Identities=20% Similarity=0.397 Sum_probs=49.5
Q ss_pred CeeEEEEeC-CCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 159 TTRFTILDA-PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDt-PGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.+.++|| +|.+.|-+-+ ...+|.+|.|+|++.--. ...++.-.++..++++++.+|+||+|-
T Consensus 133 ~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl-------~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSL-------RTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred cCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHH-------HHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 466889999 4666676443 456899999999876533 356667788888998889999999996
No 415
>PRK10867 signal recognition particle protein; Provisional
Probab=97.54 E-value=0.00045 Score=71.19 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=39.1
Q ss_pred CCeeEEEEeCCCCcCc----HHHHhh--ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f----~~~~~~--~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviNKi 230 (475)
.++.+.|+||||.... +.++.. ....++.++||+|+..| ....+.+.... ..++. -+++||+
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---------q~av~~a~~F~~~~~i~--giIlTKl 250 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---------QDAVNTAKAFNEALGLT--GVILTKL 250 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---------HHHHHHHHHHHhhCCCC--EEEEeCc
Confidence 3577999999996543 222211 12367888999999765 23333333333 34454 3578999
Q ss_pred CC
Q 011910 231 DD 232 (475)
Q Consensus 231 D~ 232 (475)
|-
T Consensus 251 D~ 252 (433)
T PRK10867 251 DG 252 (433)
T ss_pred cC
Confidence 96
No 416
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.54 E-value=0.0006 Score=55.37 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=57.9
Q ss_pred eeEEecCCCCcccccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcc-----cccCceeeeC
Q 011910 387 GFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKP-----MKKKVLFVKN 461 (475)
Q Consensus 387 G~vl~~~~~~~~~~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~-----~~~~p~~l~~ 461 (475)
|++++.++...+ +..|.+++.++... ..+++.|+++.+|+++..+.|+|.-+. .-....|+. ...+|-++..
T Consensus 1 G~vl~~~~~~~~-~~~~~~~i~~l~~~-~~~l~~~~~v~~~~Gt~~v~~ri~ll~-~~~~~pg~~~~a~l~l~~pl~~~~ 77 (97)
T cd04094 1 GDVLADPGSLLP-TRRLDVRLTVLLSA-PRPLKHRQRVHLHHGTSEVLARVVLLD-RDELAPGEEALAQLRLEEPLVALR 77 (97)
T ss_pred CCEEecCCCcCC-ceEEEEEEEEECCC-CccCCCCCeEEEEeccceEEEEEEeCC-ccccCCCCEEEEEEEECCcEeecC
Confidence 789998775443 69999999985421 267999999999999999999987443 111223432 2357888888
Q ss_pred CCEEEEEE
Q 011910 462 GAIVVCRI 469 (475)
Q Consensus 462 g~~~~~~~ 469 (475)
||++++|-
T Consensus 78 gdrfilR~ 85 (97)
T cd04094 78 GDRFILRS 85 (97)
T ss_pred CCeEEEee
Confidence 88888763
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.54 E-value=0.00044 Score=71.46 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=42.1
Q ss_pred CCeeEEEEeCCCCcCc-------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f-------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKi 230 (475)
.++.+.||||||+..+ +..++.......-+.||++++.+. ....+.+......++.. +++||+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--------~~l~~~~~~f~~~~~~~--vI~TKl 367 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--------EDLKDIYKHFSRLPLDG--LIFTKL 367 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--------HHHHHHHHHhCCCCCCE--EEEecc
Confidence 3578999999998655 222223222445778999998763 24445555555556653 579999
Q ss_pred CC
Q 011910 231 DD 232 (475)
Q Consensus 231 D~ 232 (475)
|.
T Consensus 368 De 369 (424)
T PRK05703 368 DE 369 (424)
T ss_pred cc
Confidence 97
No 418
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.53 E-value=0.00072 Score=55.58 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=59.6
Q ss_pred eEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC--CeEEEEEEEECCc-----------cceeeCCCCEEEEEec
Q 011910 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDN-----------RVRHAGPGENLRIRLS 377 (475)
Q Consensus 313 ~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~--~~~~V~si~~~~~-----------~v~~a~aG~~v~i~l~ 377 (475)
+..|.++. ++.|+++...|++|+|++||.|+++... ...+||+|...+. +++++.|..-+-+...
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 35677776 6889999999999999999999998765 3579999988753 8889997777777666
Q ss_pred cCCccCCCceeEEe
Q 011910 378 GIEEEDILSGFVLS 391 (475)
Q Consensus 378 ~~~~~~i~~G~vl~ 391 (475)
|++. +..|+-+.
T Consensus 82 gL~~--v~aG~~~~ 93 (110)
T cd03703 82 DLEK--AIAGSPLL 93 (110)
T ss_pred CCcc--ccCCCEEE
Confidence 6644 45566543
No 419
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.52 E-value=0.00018 Score=72.89 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=60.0
Q ss_pred cCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhh
Q 011910 171 KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 250 (475)
Q Consensus 171 ~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~ 250 (475)
++|.+........++++++|+|+.+.. +.....+.... .+.| +++|+||+|+.... ...+.+.+.+.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~-~~~p-iilV~NK~DLl~k~---~~~~~~~~~l~ 117 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFV-GGNP-VLLVGNKIDLLPKS---VNLSKIKEWMK 117 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHh-CCCC-EEEEEEchhhCCCC---CCHHHHHHHHH
Confidence 456664444456889999999986542 12222222211 2556 89999999995322 12334444555
Q ss_pred hHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 251 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 251 ~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.+++..++. ...++++||++|.|+.+++.
T Consensus 118 ~~~k~~g~~---~~~i~~vSAk~g~gv~eL~~ 146 (360)
T TIGR03597 118 KRAKELGLK---PVDIILVSAKKGNGIDELLD 146 (360)
T ss_pred HHHHHcCCC---cCcEEEecCCCCCCHHHHHH
Confidence 556666653 12589999999999998754
No 420
>PRK12288 GTPase RsgA; Reviewed
Probab=97.52 E-value=0.0004 Score=69.80 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=52.9
Q ss_pred cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcc
Q 011910 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (475)
Q Consensus 181 ~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 260 (475)
+++.|.+++|.+...... + ....+.+..+...++| +++|+||+|+... .+ ...+ ......+...|
T Consensus 118 aANvD~vlIV~s~~p~~s---~---~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~--~~--~~~~-~~~~~~y~~~g--- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPELS---L---NIIDRYLVACETLGIE-PLIVLNKIDLLDD--EG--RAFV-NEQLDIYRNIG--- 182 (347)
T ss_pred EEEccEEEEEEeCCCCCC---H---HHHHHHHHHHHhcCCC-EEEEEECccCCCc--HH--HHHH-HHHHHHHHhCC---
Confidence 578999998888654321 1 2444555666777888 7899999999432 11 1111 12222333333
Q ss_pred cCCeeEEEeeccccccccccc
Q 011910 261 KKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l~ 281 (475)
.+++++||++|.|+.+|.
T Consensus 183 ---~~v~~vSA~tg~GideL~ 200 (347)
T PRK12288 183 ---YRVLMVSSHTGEGLEELE 200 (347)
T ss_pred ---CeEEEEeCCCCcCHHHHH
Confidence 479999999999998853
No 421
>PRK12289 GTPase RsgA; Reviewed
Probab=97.52 E-value=9.6e-05 Score=74.30 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.5
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.++|+|.+|+|||||+|+|+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4899999999999999999643
No 422
>PRK01889 GTPase RsgA; Reviewed
Probab=97.51 E-value=0.00028 Score=71.34 Aligned_cols=79 Identities=22% Similarity=0.184 Sum_probs=54.3
Q ss_pred cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcc
Q 011910 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (475)
Q Consensus 181 ~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 260 (475)
+++.|.+++|+++..+.. .....+.+..+...|++ .++|+||+|+. +..+ ...+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p~~~------~~~ldr~L~~a~~~~i~-piIVLNK~DL~--~~~~----~~~~~~~~~--~~---- 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFN------LRRIERYLALAWESGAE-PVIVLTKADLC--EDAE----EKIAEVEAL--AP---- 170 (356)
T ss_pred EEeCCEEEEEEecCCCCC------hhHHHHHHHHHHHcCCC-EEEEEEChhcC--CCHH----HHHHHHHHh--CC----
Confidence 578999999999964421 13566777788889999 67899999994 2111 112222222 11
Q ss_pred cCCeeEEEeecccccccccc
Q 011910 261 KKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l 280 (475)
..+++++|+.+|.|+.+|
T Consensus 171 --g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 171 --GVPVLAVSALDGEGLDVL 188 (356)
T ss_pred --CCcEEEEECCCCccHHHH
Confidence 357999999999999875
No 423
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.00027 Score=68.41 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=43.9
Q ss_pred CeeEEEEeCCCCcCc----HHHHhhc--cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f----~~~~~~~--~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
++.+.||||||...+ +.++... ...+|-.+||+||+.+. ....+.+......++.. +++||+|-
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~~--~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCCE--EEEEeecC
Confidence 568999999997644 3333322 23578899999997542 24555666666677774 47999997
No 424
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.43 E-value=0.00035 Score=70.19 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=28.2
Q ss_pred eeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCC
Q 011910 160 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 195 (475)
Q Consensus 160 ~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~ 195 (475)
..+.++|.||... .-...+.-++.+|+++.||++..
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4689999999643 34456667899999999999864
No 425
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00033 Score=69.44 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=27.1
Q ss_pred eEEEEeCCCCc-------CcHHHHhhccccCCEEEEEEecCC
Q 011910 161 RFTILDAPGHK-------SYVPNMISGASQADIGVLVISARK 195 (475)
Q Consensus 161 ~~~liDtPGh~-------~f~~~~~~~~~~~D~~vlVVda~~ 195 (475)
.+.|+|.+|.. -.-+..+.-++.+|+++.||||..
T Consensus 68 ~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 68 PVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 48899999953 234455566799999999999984
No 426
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.40 E-value=2.4e-05 Score=69.37 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=95.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC---e
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET---T 160 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~---~ 160 (475)
.+-|+|..++|||+++.+-+........+. -|-.+....-+.|++ .
T Consensus 27 k~lVig~~~vgkts~i~ryv~~nfs~~yRA-------------------------------tIgvdfalkVl~wdd~t~v 75 (229)
T KOG4423|consen 27 KVLVIGDLGVGKTSSIKRYVHQNFSYHYRA-------------------------------TIGVDFALKVLQWDDKTIV 75 (229)
T ss_pred hhheeeeccccchhHHHHHHHHHHHHHHHH-------------------------------HHhHHHHHHHhccChHHHH
Confidence 578999999999999987754432111110 000111111122333 3
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cC--CceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LG--VTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~--i~~iivviNKiD~~~~~ 236 (475)
++.|+|..|+++|-..+--..+.|.++.+|+|.+...+++... ..+..+.--.. .| +| +|+..||+|. ..
T Consensus 76 RlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~s---kwkqdldsk~qLpng~Pv~-~vllankCd~--e~ 149 (229)
T KOG4423|consen 76 RLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVS---KWKQDLDSKLQLPNGTPVP-CVLLANKCDQ--EK 149 (229)
T ss_pred HHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHH---HHHHhccCcccCCCCCcch-heeccchhcc--Ch
Confidence 5789999999999887777788999999999998876531111 11221111011 13 44 6777899998 33
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
| ...+.-.++..+.+..||. ..+.+|++...|+.+..
T Consensus 150 ~---a~~~~~~~~d~f~kengf~-----gwtets~Kenkni~Ea~ 186 (229)
T KOG4423|consen 150 S---AKNEATRQFDNFKKENGFE-----GWTETSAKENKNIPEAQ 186 (229)
T ss_pred H---hhhhhHHHHHHHHhccCcc-----ceeeeccccccChhHHH
Confidence 2 2233345566677777775 68999999999998853
No 427
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.37 E-value=0.00019 Score=74.71 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=39.8
Q ss_pred eCCeeEEEEeCCCCcCcHHH---Hhh---ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEcc
Q 011910 157 TETTRFTILDAPGHKSYVPN---MIS---GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~---~~~---~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKi 230 (475)
..++.+.+|||+|....... ... ......-.+||+|+..+. ....+.+......++.. +++||+
T Consensus 332 L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--------~~l~~i~~~f~~~~~~g--~IlTKl 401 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--------DTLNEVVQAYRGPGLAG--CILTKL 401 (484)
T ss_pred ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--------HHHHHHHHHhccCCCCE--EEEeCC
Confidence 35667999999995433221 111 122234478999998763 23444455555556653 468999
Q ss_pred CC
Q 011910 231 DD 232 (475)
Q Consensus 231 D~ 232 (475)
|-
T Consensus 402 De 403 (484)
T PRK06995 402 DE 403 (484)
T ss_pred CC
Confidence 96
No 428
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.37 E-value=0.0011 Score=54.68 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=44.5
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCc---eEEEEEEc
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNK 229 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~---~iivviNK 229 (475)
.+.++|||+..... ....+..||.+++|+++..... ..+.+.+..+...+.+ ++.+|+|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSI-------RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHH-------HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 79999999976543 3456788999999999876543 3566666777776654 68889986
No 429
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.36 E-value=0.00025 Score=71.89 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=52.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|.+|+|||||+|+|+........ ........|.|.......+ +..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~-------------------------~~~~s~~pgtT~~~~~~~~---~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD-------------------------VITTSPFPGTTLDLIEIPL---DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc-------------------------eeeecCCCCeEeeEEEEEe---CCCC
Confidence 58999999999999999999654321000 0001122567766544333 2346
Q ss_pred EEEeCCCCcCcH--HHHh--------hccccCCEEEEEEecCCCccccc
Q 011910 163 TILDAPGHKSYV--PNMI--------SGASQADIGVLVISARKGEFETG 201 (475)
Q Consensus 163 ~liDtPGh~~f~--~~~~--------~~~~~~D~~vlVVda~~g~~e~~ 201 (475)
.++||||....- ...+ ..-.......+.++.....+-.|
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~gg 255 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGG 255 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEce
Confidence 799999965321 1111 11123456667777666555433
No 430
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.35 E-value=0.0019 Score=52.06 Aligned_cols=74 Identities=27% Similarity=0.368 Sum_probs=57.1
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC-CccceeeCCCCEEEEEeccCCccCCCceeEE
Q 011910 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (475)
Q Consensus 314 ~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (475)
..|.++. ++.|.+++..|.+|+|++||.++.+.. ..+|++|... ..++++|.||+.|.| .|++. --..|+.+
T Consensus 3 g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~--~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~~-~P~aGd~~ 77 (95)
T cd03702 3 GVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTT--YGKVRAMFDENGKRVKEAGPSTPVEI--LGLKG-VPQAGDKF 77 (95)
T ss_pred EEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccc--ccEEEEEECCCCCCCCEECCCCcEEE--cCCCC-CCCCCCEE
Confidence 4566665 578999999999999999999999644 5699999987 589999999999986 35432 11456666
Q ss_pred ec
Q 011910 391 SS 392 (475)
Q Consensus 391 ~~ 392 (475)
..
T Consensus 78 ~~ 79 (95)
T cd03702 78 LV 79 (95)
T ss_pred EE
Confidence 54
No 431
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.33 E-value=0.0017 Score=58.49 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=47.2
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.|||||+.... .....+..+|.+|+|+++..... ..+...+..+...+.+.+.+++|++|.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSL-------RDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchH-------HHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7999999986544 34556789999999999876543 245556666666677767789999986
No 432
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0017 Score=63.16 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=75.7
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhc---cCchhhhhcceEEeeeeeEEee
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIM---DTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~---d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
....|+++|.-|+|||||++.|...+-..+.++ ++. .....|+.+..|+.+... .
T Consensus 187 df~VIgvlG~QgsGKStllslLaans~~~dyr~-------------------yvFRpvS~Ea~E~~~~qt~~Id~~---i 244 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANSLDYDYRQ-------------------YVFRPVSPEADECIFAQTHKIDPN---I 244 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccChHHhhHH-------------------HhcccCChhhhhhhccceeccccc---c
Confidence 345689999999999999998843322111111 111 111233434444433221 1
Q ss_pred CCee-----------------EEEEeCCCCcCc-----------HHHHhhccccCCEEEEEEecCCCccccccCCCcchH
Q 011910 158 ETTR-----------------FTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 209 (475)
Q Consensus 158 ~~~~-----------------~~liDtPGh~~f-----------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~ 209 (475)
.... ..+.|+|-...+ +..+..-+..|+++|+|+|.... .+..
T Consensus 245 ~q~~i~fldtqpl~sfsi~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~d---------~~li 315 (491)
T KOG4181|consen 245 GQKSILFLDTQPLQSFSIRERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLAD---------EQLI 315 (491)
T ss_pred ccceEEeeccccccchHHHhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchhH---------HHHH
Confidence 1122 345566643222 33444446789999999997543 2444
Q ss_pred HHHHHHHHc----------------CCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhh
Q 011910 210 EHVMLAKTL----------------GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK 254 (475)
Q Consensus 210 ~~l~~~~~~----------------~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~ 254 (475)
+.+..+... ..|++|++-||.-+ .|+.....+.+-..+..+++
T Consensus 316 r~L~~Ae~~rP~laifrh~~~~~r~~~p~lVFv~~KA~r--iDf~pr~rerl~~~~~~l~~ 374 (491)
T KOG4181|consen 316 RLLNAAERLRPTLAIFRHCKGYVRDHMPQLVFVRAKAHR--IDFEPRQRERLDKKLAYLYG 374 (491)
T ss_pred HHHHHHHhhCcccCccccccccccccCcceEEEeccccc--cccChHHHHHHHHHHHHHhc
Confidence 555444332 24688889999876 44444344444444444443
No 433
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.29 E-value=0.00032 Score=68.88 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.5
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..++++|++|+|||||++.|+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 57999999999999999999643
No 434
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.28 E-value=0.00076 Score=60.64 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=49.6
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhc--cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~--~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.++.+.|+|||+... ...... +..+|.+++|+.+..... ..+.+.+..+...+.+.+-+++|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVAL-------DDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhH-------HHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 578899999999743 222222 368899999998775432 467788888888899866789999986
No 435
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.27 E-value=0.0018 Score=56.33 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=44.0
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cCCceEEEEEEccCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDD 232 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~i~~iivviNKiD~ 232 (475)
+.+.++|+|+... ......+..+|.+++|+++..... ..+...+..+.. .+..++.+++|+++.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSI-------TDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHH-------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 7899999998643 334566889999999999875432 234444544433 234457899999985
No 436
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.00078 Score=73.52 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=38.6
Q ss_pred CCeeEEEEeCCCCcCcHHHH---hh---ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEE
Q 011910 158 ETTRFTILDAPGHKSYVPNM---IS---GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVN 228 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~---~~---~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviN 228 (475)
.++.+.||||||....-.++ +. ....++-.+||+|++.+. ....+.+...... ++.. +++|
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--------~~l~~i~~~f~~~~~~~i~g--lIlT 331 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--------DTLNEVVHAYRHGAGEDVDG--CIIT 331 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--------HHHHHHHHHHhhcccCCCCE--EEEe
Confidence 45679999999944332221 11 233577889999998642 1223333333322 5554 4699
Q ss_pred ccCC
Q 011910 229 KMDD 232 (475)
Q Consensus 229 KiD~ 232 (475)
|+|-
T Consensus 332 KLDE 335 (767)
T PRK14723 332 KLDE 335 (767)
T ss_pred ccCC
Confidence 9997
No 437
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0068 Score=62.73 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=62.0
Q ss_pred ccCCeEEEEEEEEeeEecCCeEEecCCCC---eEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 321 KDMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 321 ~~~G~v~~g~v~~G~l~~gd~v~i~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
+..|.++.+.|..|.++.|..+.+...+. ..+|.||+++++++.++.+|+-|+|.+.| ..+++.||+|-.
T Consensus 425 ~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD~le~ 497 (509)
T COG0532 425 PKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGDILEV 497 (509)
T ss_pred CCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCCCEEEE
Confidence 56899999999999999999999986553 36899999999999999999999999997 567999999853
No 438
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.26 E-value=0.00035 Score=61.90 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll 103 (475)
...+++++|.+++|||||+++|.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999994
No 439
>PRK13796 GTPase YqeH; Provisional
Probab=97.26 E-value=0.0013 Score=66.86 Aligned_cols=92 Identities=18% Similarity=0.162 Sum_probs=57.4
Q ss_pred HHHhhccccCC-EEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHh
Q 011910 175 PNMISGASQAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFL 253 (475)
Q Consensus 175 ~~~~~~~~~~D-~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l 253 (475)
..++..+..+| .+++|||+.+.. +.....+.... .+.| +++|+||+|+..... ..+.+.+.+..+.
T Consensus 60 ~~~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~-~~kp-viLViNK~DLl~~~~---~~~~i~~~l~~~~ 126 (365)
T PRK13796 60 LKLLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV-GNNP-VLLVGNKADLLPKSV---KKNKVKNWLRQEA 126 (365)
T ss_pred HHHHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh-CCCC-EEEEEEchhhCCCcc---CHHHHHHHHHHHH
Confidence 34667777666 999999987632 22233333222 2556 889999999953221 1223334444455
Q ss_pred hhhcCcccCCeeEEEeecccccccccccc
Q 011910 254 KASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 254 ~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+..|+. ...++++||++|.|+.++.+
T Consensus 127 k~~g~~---~~~v~~vSAk~g~gI~eL~~ 152 (365)
T PRK13796 127 KELGLR---PVDVVLISAQKGHGIDELLE 152 (365)
T ss_pred HhcCCC---cCcEEEEECCCCCCHHHHHH
Confidence 555553 12689999999999988654
No 440
>PRK13796 GTPase YqeH; Provisional
Probab=97.25 E-value=0.00031 Score=71.31 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.++.++|.+|+|||||+|+|+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999643
No 441
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.00098 Score=65.92 Aligned_cols=66 Identities=27% Similarity=0.331 Sum_probs=42.6
Q ss_pred EeeCCeeEEEEeCCCCc----CcHHHHhhc--cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEE
Q 011910 155 FETETTRFTILDAPGHK----SYVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLV 226 (475)
Q Consensus 155 ~~~~~~~~~liDtPGh~----~f~~~~~~~--~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivv 226 (475)
|.-+++.+.|+||.|.. ..+.+|..- +-.+|-+|+|+||+-| |.-+....+-.. ++- -++
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG----------Qaae~Qa~aFk~~vdvg--~vI 246 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG----------QAAEAQARAFKETVDVG--AVI 246 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc----------HhHHHHHHHHHHhhccc--eEE
Confidence 33457789999999943 234444443 3469999999999987 444433222222 343 357
Q ss_pred EEccCC
Q 011910 227 VNKMDD 232 (475)
Q Consensus 227 iNKiD~ 232 (475)
|||+|-
T Consensus 247 lTKlDG 252 (483)
T KOG0780|consen 247 LTKLDG 252 (483)
T ss_pred EEeccc
Confidence 999995
No 442
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.0014 Score=66.17 Aligned_cols=135 Identities=19% Similarity=0.262 Sum_probs=69.7
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccch------------HHHHHHHHHHhhcCccchhhhhhccCchhhhhcce
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDD------------RTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK 146 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~------------~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ 146 (475)
.+++..|.++|--||||||.++.|.+....-.. ....-++.-+...|-.-| ..-....+.+..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f--~~~~~~~Pv~Ia--- 171 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF--GSGTEKDPVEIA--- 171 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCcee--cCCCCCCHHHHH---
Confidence 455678999999999999999998644322000 011111111111111000 000000111100
Q ss_pred EEeeeeeEEeeCCeeEEEEeCCCCcCc----HHHHh--hccccCCEEEEEEecCCCccccccCCCcchHHHHHHH--HHc
Q 011910 147 TVEVGRAHFETETTRFTILDAPGHKSY----VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA--KTL 218 (475)
Q Consensus 147 ti~~~~~~~~~~~~~~~liDtPGh~~f----~~~~~--~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~--~~~ 218 (475)
..+...+....+.+.|+||.|.-.. +.++. .....+|=++|||||..| |.-.....+ ..+
T Consensus 172 --k~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G----------QdA~~~A~aF~e~l 239 (451)
T COG0541 172 --KAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG----------QDAVNTAKAFNEAL 239 (451)
T ss_pred --HHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc----------hHHHHHHHHHhhhc
Confidence 0000112234567999999995433 44432 235589999999999987 433322222 224
Q ss_pred CCceEEEEEEccCC
Q 011910 219 GVTKLLLVVNKMDD 232 (475)
Q Consensus 219 ~i~~iivviNKiD~ 232 (475)
++. =|++||+|-
T Consensus 240 ~it--GvIlTKlDG 251 (451)
T COG0541 240 GIT--GVILTKLDG 251 (451)
T ss_pred CCc--eEEEEcccC
Confidence 555 258999996
No 443
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.18 E-value=0.0013 Score=66.20 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=82.7
Q ss_pred cceEEeeeeeEEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCC---ccccccCCCcchHHHHHHHHH---
Q 011910 144 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFETGFEKGGQTREHVMLAKT--- 217 (475)
Q Consensus 144 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g---~~e~~~~~~~~t~~~l~~~~~--- 217 (475)
+-.|.......|...+..+.++|.+|+..+.+.+......++++|+|||.++- ..|.. . .....+.+.+...
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~-~-~nrl~esl~~f~~l~~ 245 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE-S-TNRMQESLNLFESICN 245 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccC-c-chHHHHHHHHHHHHHc
Confidence 34455556667888899999999999999999999999999999999998752 11100 0 0122222222222
Q ss_pred ----cCCceEEEEEEccCCCCC------------CchH-HHHHHHHhhhhhHhhhhcCc-ccCCeeEEEeeccccccccc
Q 011910 218 ----LGVTKLLLVVNKMDDHTV------------NWSK-ERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKT 279 (475)
Q Consensus 218 ----~~i~~iivviNKiD~~~~------------~~~~-~~~~~i~~~l~~~l~~~~~~-~~~~~~iipiSa~~g~gi~~ 279 (475)
.+.| +++++||.|+... +|.. ..++.+.+-+...+....-. ....+-...++|..-.++..
T Consensus 246 ~~~~~~~p-iil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~ 324 (342)
T smart00275 246 SRWFANTS-IILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRV 324 (342)
T ss_pred CccccCCc-EEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHH
Confidence 2567 9999999997211 1111 12344444444444433221 12345567788877777766
Q ss_pred cc
Q 011910 280 RV 281 (475)
Q Consensus 280 l~ 281 (475)
.+
T Consensus 325 v~ 326 (342)
T smart00275 325 VF 326 (342)
T ss_pred HH
Confidence 43
No 444
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.17 E-value=0.0017 Score=62.97 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=59.9
Q ss_pred ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCccc
Q 011910 182 SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK 261 (475)
Q Consensus 182 ~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 261 (475)
...|-+|+|+.+..+.+. .....+.|.++...|+. .|+++||+|+... . .... ++.......+||
T Consensus 78 ~n~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~-pvIvlnK~DL~~~--~--~~~~--~~~~~~y~~~gy--- 142 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIE-PVIVLNKIDLLDD--E--EAAV--KELLREYEDIGY--- 142 (301)
T ss_pred cccceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCc-EEEEEEccccCcc--h--HHHH--HHHHHHHHhCCe---
Confidence 357889999999988762 34667788888889998 5678999999432 1 1221 444455555655
Q ss_pred CCeeEEEeeccccccccccc
Q 011910 262 KDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 262 ~~~~iipiSa~~g~gi~~l~ 281 (475)
+++.+|+++++|+.++.
T Consensus 143 ---~v~~~s~~~~~~~~~l~ 159 (301)
T COG1162 143 ---PVLFVSAKNGDGLEELA 159 (301)
T ss_pred ---eEEEecCcCcccHHHHH
Confidence 69999999999998863
No 445
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.17 E-value=0.00098 Score=66.40 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=80.0
Q ss_pred ceEEeeeeeEEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCc---cccccCCCcchHHHHHHHHH----
Q 011910 145 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT---- 217 (475)
Q Consensus 145 g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~---~e~~~~~~~~t~~~l~~~~~---- 217 (475)
..|.......|...+..+.++|++|+....+.+......++++|+|||.++-. .|... .....+.+.+...
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~--~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES--TNRMQESLNLFDSICNS 223 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc--chHHHHHHHHHHHHHhC
Confidence 34555555667788899999999999999999999999999999999987521 00000 0123333333222
Q ss_pred ---cCCceEEEEEEccCCCCC------------Cch--HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 218 ---LGVTKLLLVVNKMDDHTV------------NWS--KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 218 ---~~i~~iivviNKiD~~~~------------~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.+.| +++++||.|+... +|. ...++...+-+...+....-.....+-...++|..-.++...
T Consensus 224 ~~~~~~p-ill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~v 302 (317)
T cd00066 224 RWFANTS-IILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFV 302 (317)
T ss_pred ccccCCC-EEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHH
Confidence 2567 9999999996211 111 112344444444444333211123445566777776666654
No 446
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.17 E-value=0.0038 Score=62.11 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+++...+.|..|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4567889999999999999999854
No 447
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.17 E-value=0.00043 Score=62.92 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.0
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.+.|.|..|||||||+++|+.
T Consensus 2 v~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999984
No 448
>PRK00098 GTPase RsgA; Reviewed
Probab=97.12 E-value=0.00053 Score=67.67 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=19.7
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..++++|++|+|||||+++|+.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999964
No 449
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.05 E-value=0.01 Score=63.90 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=60.8
Q ss_pred EEEc-cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCC-ccCCCceeEEecC
Q 011910 318 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSSV 393 (475)
Q Consensus 318 ~~~~-~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~vl~~~ 393 (475)
.+|+ ..+.++.++|..|.|+.|..|....+..-.+|.||++++++|.+|..|+-|+|.+.+.. ..++..||+|...
T Consensus 473 ~vf~~~~~~i~G~~V~~G~i~~~~~v~r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~~ 550 (590)
T TIGR00491 473 LVFRQSKPAIVGVEVLTGVIRQGYPLMKDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYVD 550 (590)
T ss_pred eeeeCCCCeEEEEEEecCEEecCCeEEecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEEe
Confidence 4663 34788999999999999998743223345789999999999999999999999999742 2579999999763
No 450
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.04 E-value=0.00086 Score=64.69 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=47.6
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.....++-|+|-+|.|||+|+|++........ .+ .....+.|+|+.+....--..
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~---------k~----------------a~vG~~pGVT~~V~~~iri~~ 194 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKK---------KA----------------ARVGAEPGVTRRVSERIRISH 194 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhc---------cc----------------eeccCCCCceeeehhheEecc
Confidence 34667999999999999999998843332211 11 112335899998887655566
Q ss_pred CeeEEEEeCCCC
Q 011910 159 TTRFTILDAPGH 170 (475)
Q Consensus 159 ~~~~~liDtPGh 170 (475)
...+.++||||.
T Consensus 195 rp~vy~iDTPGi 206 (335)
T KOG2485|consen 195 RPPVYLIDTPGI 206 (335)
T ss_pred CCceEEecCCCc
Confidence 777999999994
No 451
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.03 E-value=0.0028 Score=65.05 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=50.9
Q ss_pred cceEEeeeeeEEeeCC---eeEEEEeCCCCcC-------------cHHHHhhccccCCEEEEEEecCCCccccccCCCcc
Q 011910 144 KGKTVEVGRAHFETET---TRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQ 207 (475)
Q Consensus 144 ~g~ti~~~~~~~~~~~---~~~~liDtPGh~~-------------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~ 207 (475)
.|.|+......+...+ .++.++|.||... .....-..+.+++++||+|- +|...+. ...
T Consensus 393 ~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAE---RSn 467 (980)
T KOG0447|consen 393 EGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAE---RSI 467 (980)
T ss_pred CCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchh---hhh
Confidence 4666666556665554 4589999999632 23333345778999999974 2211000 012
Q ss_pred hHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 208 TREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 208 t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
.-.....+.-.|.. -|+|++|+|+..
T Consensus 468 VTDLVsq~DP~GrR-TIfVLTKVDlAE 493 (980)
T KOG0447|consen 468 VTDLVSQMDPHGRR-TIFVLTKVDLAE 493 (980)
T ss_pred HHHHHHhcCCCCCe-eEEEEeecchhh
Confidence 22333444455766 789999999943
No 452
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.02 E-value=0.0041 Score=50.20 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=55.0
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC-CccceeeCCCCEEEEEeccCCccCCCceeEE
Q 011910 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (475)
Q Consensus 314 ~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (475)
..|.++. ++.|.+++..|.+|+|++||.++.+ ....+|+++... .+.+..|.|++.|.+ -|++. ....|+.+
T Consensus 3 g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G--~~~GkVr~~~d~~g~~v~~a~Ps~~v~i--~g~~~-~p~aGd~~ 77 (95)
T cd03701 3 GTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAG--GTYGKIRTMVDENGKALLEAGPSTPVEI--LGLKD-VPKAGDGV 77 (95)
T ss_pred EEEEEEEecCCCCeeEEEEEEcCeEecCCEEEEC--CccceEEEEECCCCCCccccCCCCCEEE--eeecC-CccCCCEE
Confidence 4556655 5789999999999999999999995 446789999886 678999999999864 34321 23455544
Q ss_pred e
Q 011910 391 S 391 (475)
Q Consensus 391 ~ 391 (475)
.
T Consensus 78 ~ 78 (95)
T cd03701 78 L 78 (95)
T ss_pred E
Confidence 3
No 453
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.00 E-value=0.0014 Score=63.82 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=52.6
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 158 (475)
..+.++|||.+++|||||+++|-. ... +.. .| .-.||+.........
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~--~~a---------------~~~--Nf------------PF~TIdPn~a~V~v~d~ 67 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTK--SKA---------------GAA--NF------------PFCTIDPNEARVEVPDS 67 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhc--CCC---------------Ccc--CC------------CcceeccccceeecCch
Confidence 457899999999999999999821 111 000 11 123333332222211
Q ss_pred ---------------CeeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCC
Q 011910 159 ---------------TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 195 (475)
Q Consensus 159 ---------------~~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~ 195 (475)
...++++|.+|... .-+..++-++.+|+++-||+|..
T Consensus 68 Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 68 RFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 12389999999532 24445566789999999999865
No 454
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.95 E-value=0.0038 Score=56.54 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=50.2
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
..+.+.|+|||+... ......+..+|.+++|+.+..... ....+.+..+...+.+ +.+|+||+|.
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~-------~~~~~~~~~l~~~~~~-~~vV~N~~~~ 155 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGL-------HDLERAVELVRHFGIP-VGVVINKYDL 155 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccH-------HHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 568899999997643 344566788999999999876432 3566777777888888 7789999997
No 455
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.94 E-value=0.004 Score=63.86 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=26.0
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhccc
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQV 109 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~ 109 (475)
....++|+|+|+.++|||||+++|....|..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4556789999999999999999998776543
No 456
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.90 E-value=0.0031 Score=62.62 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=20.9
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
+...|-|-.|||||||+++|+....
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~ 26 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD 26 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC
Confidence 4567889999999999999986554
No 457
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.86 E-value=0.02 Score=57.96 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
...+.|++||++-+||||++.++....
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~ 41 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELL 41 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHh
Confidence 455789999999999999999986554
No 458
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.86 E-value=0.0036 Score=58.04 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=39.8
Q ss_pred CCeeEEEEeCCCCcCc------HHHHhhccccCCEEEE---EEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 158 ETTRFTILDAPGHKSY------VPNMISGASQADIGVL---VISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f------~~~~~~~~~~~D~~vl---VVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
....+.++|+||+..+ ....++.+...|+-+. ++|+.-=.-++.|- ....-.+.-+..+..|| |=|+.
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melph-VNvlS 171 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPH-VNVLS 171 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccc-hhhhh
Confidence 3567899999997655 4555555555565444 45543211000000 11222233344567896 47899
Q ss_pred ccCC
Q 011910 229 KMDD 232 (475)
Q Consensus 229 KiD~ 232 (475)
|+|+
T Consensus 172 K~Dl 175 (290)
T KOG1533|consen 172 KADL 175 (290)
T ss_pred HhHH
Confidence 9997
No 459
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.80 E-value=0.014 Score=57.19 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=69.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccc------------hHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceE
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVD------------DRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT 147 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~------------~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~t 147 (475)
.+...|.++|-.|+||||.++.|.+..-.-. ...++-++.+....|-.-.... .|-.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~-----------~G~D 205 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK-----------EGAD 205 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC-----------CCCC
Confidence 4466789999999999999999965432111 1122222223322221100000 0000
Q ss_pred EeeeeeE------EeeCCeeEEEEeCCCCc----CcHHHHhhc---cc-----cCCEEEEEEecCCCccccccCCCcchH
Q 011910 148 VEVGRAH------FETETTRFTILDAPGHK----SYVPNMISG---AS-----QADIGVLVISARKGEFETGFEKGGQTR 209 (475)
Q Consensus 148 i~~~~~~------~~~~~~~~~liDtPGh~----~f~~~~~~~---~~-----~~D~~vlVVda~~g~~e~~~~~~~~t~ 209 (475)
. +..- ....++.+.|+||.|.. +.+.++..- +. .++-+++|+||..| ....
T Consensus 206 p--AaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG---------qnal 274 (340)
T COG0552 206 P--AAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG---------QNAL 274 (340)
T ss_pred c--HHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC---------hhHH
Confidence 0 0000 11246779999999943 334333222 22 24458888899988 3445
Q ss_pred HHHHHHHH-cCCceEEEEEEccCC
Q 011910 210 EHVMLAKT-LGVTKLLLVVNKMDD 232 (475)
Q Consensus 210 ~~l~~~~~-~~i~~iivviNKiD~ 232 (475)
.+.+.... .++. - +++||+|-
T Consensus 275 ~QAk~F~eav~l~-G-iIlTKlDg 296 (340)
T COG0552 275 SQAKIFNEAVGLD-G-IILTKLDG 296 (340)
T ss_pred HHHHHHHHhcCCc-e-EEEEeccc
Confidence 55544433 4666 3 57999995
No 460
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.76 E-value=0.012 Score=46.76 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=47.2
Q ss_pred EEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEEE
Q 011910 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 164 (475)
Q Consensus 85 v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 164 (475)
+++.|..|+||||+...|...... .|..+-. + + .+.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----------------------------------~g~~v~~----~--~--d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----------------------------------RGKRVLL----I--D--DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------------------------------CCCeEEE----E--C--CEEE
Confidence 678899999999999988543321 1111100 0 1 7999
Q ss_pred EeCCCCcCcHHH-HhhccccCCEEEEEEecCCCc
Q 011910 165 LDAPGHKSYVPN-MISGASQADIGVLVISARKGE 197 (475)
Q Consensus 165 iDtPGh~~f~~~-~~~~~~~~D~~vlVVda~~g~ 197 (475)
+|+||....... ....+..+|.+++++++....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 999997654432 245567899999999987653
No 461
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.75 E-value=0.01 Score=59.67 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+++...+.|..|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4456789999999999999999854
No 462
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.71 E-value=0.007 Score=49.44 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=27.4
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 196 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g 196 (475)
+.+.++|+|+..... ....+..+|.+++++++...
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 779999999975433 33667889999999998754
No 463
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.55 E-value=0.0064 Score=43.65 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=24.8
Q ss_pred Hhhcc-ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-c-CCceEEEEEEccC
Q 011910 177 MISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L-GVTKLLLVVNKMD 231 (475)
Q Consensus 177 ~~~~~-~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~-~i~~iivviNKiD 231 (475)
.+.++ ..++++++++|.++.. |+....|..- +...+. + +.| +++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~C---Gysie~Q~~L-~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQC---GYSIEEQLSL-FKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TT---SS-HHHHHHH-HHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCC---CCCHHHHHHH-HHHHHHHcCCCC-EEEEEeccC
Confidence 44554 4789999999998753 2322122211 122222 3 567 999999998
No 464
>PRK13695 putative NTPase; Provisional
Probab=96.42 E-value=0.0096 Score=53.72 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=18.8
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
+|+++|.+|+|||||+..+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998754
No 465
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.011 Score=55.98 Aligned_cols=143 Identities=17% Similarity=0.252 Sum_probs=80.6
Q ss_pred ccccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeee
Q 011910 74 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 153 (475)
Q Consensus 74 ~~~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~ 153 (475)
++.....-..||..+|..|-|||||++.|....-.... . .-...++......+
T Consensus 34 ~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p---------------~------------~H~~~~V~L~~~Ty 86 (406)
T KOG3859|consen 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEP---------------S------------THTLPNVKLQANTY 86 (406)
T ss_pred HHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCC---------------C------------ccCCCCceeecchh
Confidence 33344455679999999999999999998533211000 0 00012233333333
Q ss_pred EEeeCC--eeEEEEeCCCCcC-------------cHH--------------HHhhccc--cCCEEEEEEecCCCcccccc
Q 011910 154 HFETET--TRFTILDAPGHKS-------------YVP--------------NMISGAS--QADIGVLVISARKGEFETGF 202 (475)
Q Consensus 154 ~~~~~~--~~~~liDtPGh~~-------------f~~--------------~~~~~~~--~~D~~vlVVda~~g~~e~~~ 202 (475)
.+.-.+ -+++++||.|+.+ |+. .++.... ..+++++.|..+..
T Consensus 87 elqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH------ 160 (406)
T KOG3859|consen 87 ELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH------ 160 (406)
T ss_pred hhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc------
Confidence 332233 3589999999632 221 1112222 45788888886532
Q ss_pred CCCcchHHHHHHH--HH--cCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCc
Q 011910 203 EKGGQTREHVMLA--KT--LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (475)
Q Consensus 203 ~~~~~t~~~l~~~--~~--~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 259 (475)
....+.++ +. .++. +|-+|-|.|.. ++..+...+..+..-|.+.|..
T Consensus 161 -----~LKslDLvtmk~LdskVN-IIPvIAKaDti----sK~eL~~FK~kimsEL~sngv~ 211 (406)
T KOG3859|consen 161 -----SLKSLDLVTMKKLDSKVN-IIPVIAKADTI----SKEELKRFKIKIMSELVSNGVQ 211 (406)
T ss_pred -----chhHHHHHHHHHHhhhhh-hHHHHHHhhhh----hHHHHHHHHHHHHHHHHhcCce
Confidence 22222222 22 2455 77889999983 4566777777777777776653
No 466
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.23 E-value=0.0035 Score=64.32 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..+|++||.+|+|||++||.|++
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG 336 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVG 336 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhc
Confidence 78999999999999999999954
No 467
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.23 E-value=0.016 Score=60.45 Aligned_cols=145 Identities=16% Similarity=0.185 Sum_probs=76.4
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+...+-++|.-++|||.|+..++... +++. ..++. ....+++.. .....
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~--~~~~----------~~~~~---------------~~~~avn~v--~~~g~ 472 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRS--MSDN----------NTGTT---------------KPRYAVNSV--EVKGQ 472 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccc--cccc----------cccCC---------------CCceeeeee--eeccc
Confidence 4556688999999999999999885321 1100 00000 011122221 11123
Q ss_pred CeeEEEEeCCCC-cCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cCCceEEEEEEccCCCCCC
Q 011910 159 TTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 159 ~~~~~liDtPGh-~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~i~~iivviNKiD~~~~~ 236 (475)
.+.+.+-|.+-. .++..+- -..||+++++.|.+.... |+ ...+....-.. .++| +++|.+|+|+....
T Consensus 473 ~k~LiL~ei~~~~~~~l~~k---e~~cDv~~~~YDsS~p~s---f~---~~a~v~~~~~~~~~~P-c~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 473 QKYLILREIGEDDQDFLTSK---EAACDVACLVYDSSNPRS---FE---YLAEVYNKYFDLYKIP-CLMVATKADLDEVP 542 (625)
T ss_pred cceEEEeecCccccccccCc---cceeeeEEEecccCCchH---HH---HHHHHHHHhhhccCCc-eEEEeeccccchhh
Confidence 344555555442 1222211 268999999999885431 11 22222222221 4677 88999999994322
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 273 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~ 273 (475)
++..-+..++..++++. +.+++|..+
T Consensus 543 ------Q~~~iqpde~~~~~~i~-----~P~~~S~~~ 568 (625)
T KOG1707|consen 543 ------QRYSIQPDEFCRQLGLP-----PPIHISSKT 568 (625)
T ss_pred ------hccCCChHHHHHhcCCC-----CCeeeccCC
Confidence 22222335566666664 456666653
No 468
>CHL00175 minD septum-site determining protein; Validated
Probab=96.17 E-value=0.027 Score=55.00 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=46.9
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.+.|+|||+.... ....++..+|.+|+|+++..... ..+...+..+...+.+.+-+++|+++.
T Consensus 126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~~~si-------~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPEITAI-------RDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCChHHH-------HHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 577999999987543 33455677999999998765432 245566666777777667789999985
No 469
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.96 E-value=0.013 Score=52.99 Aligned_cols=41 Identities=24% Similarity=0.129 Sum_probs=28.6
Q ss_pred CEEEEEEecCCCccccccCCCcchHHHHHH--HHHcCCceEEEEEEccCCC
Q 011910 185 DIGVLVISARKGEFETGFEKGGQTREHVML--AKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 185 D~~vlVVda~~g~~e~~~~~~~~t~~~l~~--~~~~~i~~iivviNKiD~~ 233 (475)
|++++|+||..+.. ....+.... +...+.| +|+|+||+|+.
T Consensus 1 DvVl~VvDar~p~~-------~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLG-------CRCPQVEEAVLQAGGNKK-LVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCC-------CCCHHHHHHHHhccCCCC-EEEEEehhhcC
Confidence 78999999988643 233444444 3334566 88999999993
No 470
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.92 E-value=0.02 Score=51.58 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+.+.++|+|..|||||||+.+|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4567899999999999999999543
No 471
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.89 E-value=0.013 Score=68.28 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.6
Q ss_pred eeEEEEecCCCCchhHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQ 101 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~ 101 (475)
+=..|+|++|||||||+.+
T Consensus 112 PWYlviG~~gsGKtt~l~~ 130 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQN 130 (1169)
T ss_pred CCEEEECCCCCchhHHHHh
Confidence 4578999999999999864
No 472
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=95.87 E-value=0.027 Score=54.19 Aligned_cols=29 Identities=28% Similarity=0.183 Sum_probs=23.6
Q ss_pred cCCcceeeEEEEecCCCCchhHHHHHHHH
Q 011910 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 77 ~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
....+++.-.|.|..|||||||++.++..
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHcc
Confidence 34566777789999999999999998643
No 473
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.82 E-value=0.0081 Score=44.16 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=19.4
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
...|.|+.+||||||++++...
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998543
No 474
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.79 E-value=0.0032 Score=62.40 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.4
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHH
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll 103 (475)
..++.+.|+++|.+|+|||+++|.|.
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLR 328 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHh
Confidence 36788999999999999999999993
No 475
>PRK14845 translation initiation factor IF-2; Provisional
Probab=95.78 E-value=0.18 Score=57.57 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=60.2
Q ss_pred EEEc-cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCC-ccCCCceeEEecC
Q 011910 318 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSSV 393 (475)
Q Consensus 318 ~~~~-~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~vl~~~ 393 (475)
.+|+ ..+.++.++|..|+|+.|..|.-..+....+|.||++++++|++|.+|+-|+|.+.+.. ..++..||+|...
T Consensus 931 ~vF~~~~~~IaG~~V~~G~i~~~~~l~r~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~~ 1008 (1049)
T PRK14845 931 CIFRRSNPAIVGVEVLEGTLRVGVTLIKEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYVD 1008 (1049)
T ss_pred eEEeCCCCeEEEEEEeeCEEecCcEEEecCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEEe
Confidence 5663 34788999999999999987754222234789999999999999999999999998743 2468899988653
No 476
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.75 E-value=0.0081 Score=59.86 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=23.2
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHH
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-+..++++|+|-+|.|||++++.|..
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~ 274 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKR 274 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHH
Confidence 46778999999999999999999943
No 477
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.65 E-value=0.01 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.|+|.|.+||||||+...|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999966544
No 478
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.073 Score=46.86 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.7
Q ss_pred ceeeEEEEecCCCCchhHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
...+|.|.|+||+|||||+..+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 446899999999999999988843
No 479
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.62 E-value=0.041 Score=54.97 Aligned_cols=67 Identities=27% Similarity=0.265 Sum_probs=45.7
Q ss_pred EEEEeCCCCc-CcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 162 FTILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 162 ~~liDtPGh~-~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
..-.|-+++. .|.++...-+..+|++|-|+||.++.-.. -.+..+.+ +.+.|-+++|+|+||+|+.+
T Consensus 124 ~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR----~~~vE~~V--~~~~gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 124 ENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTR----CPEVEEAV--LQAHGNKKLILVLNKIDLVP 191 (435)
T ss_pred hhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCC----ChhHHHHH--HhccCCceEEEEeehhccCC
Confidence 4455666664 47777777888999999999999985310 11222322 22456577999999999943
No 480
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.59 E-value=0.11 Score=51.97 Aligned_cols=136 Identities=15% Similarity=0.189 Sum_probs=82.4
Q ss_pred hcceEEeeeeeEEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCc--cccccCCCcchHHHHHHHHHc--
Q 011910 143 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE--FETGFEKGGQTREHVMLAKTL-- 218 (475)
Q Consensus 143 ~~g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~--~e~~~~~~~~t~~~l~~~~~~-- 218 (475)
.|-.|..+....|...+..+-++|.+|+..=.+.++.....++++|+||+.++=. .+++- ......+.+.+....
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~-~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDE-TTNRMHESLKLFESICN 256 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhccccc-chhHHHHHHHHHHHHhc
Confidence 4455777777889999999999999999999999999999999999999876521 11000 012233444443321
Q ss_pred -----CCceEEEEEEccCCCCCC------------ch-HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 219 -----GVTKLLLVVNKMDDHTVN------------WS-KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 219 -----~i~~iivviNKiD~~~~~------------~~-~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+.+ +|+++||+|+.... |. ...+++....+...+.++..+..+.+-...+.|..-.||...
T Consensus 257 ~~~F~~ts-iiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~v 335 (354)
T KOG0082|consen 257 NKWFANTS-IILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFV 335 (354)
T ss_pred CcccccCc-EEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHH
Confidence 455 99999999982110 00 012444444454444444333212233334456555666554
No 481
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.40 E-value=0.027 Score=50.03 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=20.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..++|+|..|||||||+.+|+..
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHH
Confidence 56899999999999999999644
No 482
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.36 E-value=0.049 Score=55.94 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=59.3
Q ss_pred cceEEeeeeeEEee-CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCC---ccccccCCCcchHHHHHHHHHc-
Q 011910 144 KGKTVEVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFETGFEKGGQTREHVMLAKTL- 218 (475)
Q Consensus 144 ~g~ti~~~~~~~~~-~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g---~~e~~~~~~~~t~~~l~~~~~~- 218 (475)
|..|..+....|.. .+..+.++|+.|+..-.+.++..+...+++|+||+..+= ..|.. ......+.+.+....
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~--~~nrl~esl~lF~~i~ 296 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDP--NTNRLHESLNLFESIC 296 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSST--TSBHHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccc--hHHHHHHHHHHHHHHH
Confidence 34566666777888 999999999999999999999999999999999996531 11100 012344555554332
Q ss_pred ------CCceEEEEEEccCC
Q 011910 219 ------GVTKLLLVVNKMDD 232 (475)
Q Consensus 219 ------~i~~iivviNKiD~ 232 (475)
+.+ +||++||+|+
T Consensus 297 ~~~~~~~~~-iil~lnK~D~ 315 (389)
T PF00503_consen 297 NNPWFKNTP-IILFLNKIDL 315 (389)
T ss_dssp TSGGGTTSE-EEEEEE-HHH
T ss_pred hCcccccCc-eEEeeecHHH
Confidence 455 9999999997
No 483
>PRK04004 translation initiation factor IF-2; Validated
Probab=95.36 E-value=0.26 Score=53.27 Aligned_cols=75 Identities=21% Similarity=0.262 Sum_probs=58.9
Q ss_pred EEEc-cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCC-ccCCCceeEEec
Q 011910 318 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSS 392 (475)
Q Consensus 318 ~~~~-~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~vl~~ 392 (475)
.+|+ ..+.++.++|..|+|+.|..|.-..+....+|.||++++++|+++.+|+-|+|.+.+.. ..+++.||+|-.
T Consensus 475 ~vf~~~~~~IaGc~V~~G~i~~~~~v~r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSDPAIVGVEVLGGTIKPGVPLIKEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCCCeEEEEEEEeCEEecCCEEEEECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 5663 34788999999999999998543122234689999999999999999999999998752 147889998854
No 484
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.28 E-value=0.045 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.0
Q ss_pred eeeEEEEecCCCCchhHHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..||.|.|.+|||||||+++|+..
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999643
No 485
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.27 E-value=0.023 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.0
Q ss_pred eeeEEEEecCCCCchhHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..+|.|.|.+||||||++.+|+.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCccccchHHHHHhh
Confidence 57999999999999999999954
No 486
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.26 E-value=0.26 Score=53.07 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=47.6
Q ss_pred EEccCCeE-EEEEEEEeeEecCCeEEecCCC--CeEEEEEEEECCccceeeCCCCEEEEEecc
Q 011910 319 KFKDMGTV-VMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSG 378 (475)
Q Consensus 319 ~~~~~G~v-~~g~v~~G~l~~gd~v~i~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~ 378 (475)
+|..++.+ +...|..|+|+.|..|.+..-. .-.+|.||+++|.+|+.|.-||-|+|.|.+
T Consensus 945 ifN~RdPiv~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~ 1007 (1064)
T KOG1144|consen 945 IFNKRDPIVLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEA 1007 (1064)
T ss_pred hccCCCCeEEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEec
Confidence 34455555 4458999999999998874322 345899999999999999999999988774
No 487
>PRK01889 GTPase RsgA; Reviewed
Probab=95.24 E-value=0.016 Score=58.66 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..++++|.+|+|||||++.|+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999653
No 488
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.17 E-value=0.012 Score=55.04 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=17.8
Q ss_pred eEEEEecCCCCchhHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQI 102 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~L 102 (475)
-|+|+|+.|||||||++.|
T Consensus 33 ~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999977
No 489
>PHA00729 NTP-binding motif containing protein
Probab=95.14 E-value=0.017 Score=54.17 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=22.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
....+|+|.|.+|+|||||..+|....
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344699999999999999999986543
No 490
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=95.09 E-value=0.024 Score=56.69 Aligned_cols=198 Identities=6% Similarity=-0.127 Sum_probs=160.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.-..+.-+-++...++.+++...-+-.+.......+.......++.+-||.+.+-.+.+..++.-++....-......-.
T Consensus 81 n~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ft 160 (501)
T KOG0459|consen 81 NAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKRFT 160 (501)
T ss_pred eEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecceeEE
Confidence 34456667788888888877655444555566666677777888899999999999999988887777766655555555
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
.....-+-+++.+++..+..+-..++++......-++-|+.|++...++..+-.+.....+-.+....++++....+|..
T Consensus 161 iLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~ 240 (501)
T KOG0459|consen 161 ILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYE 240 (501)
T ss_pred eeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHH
Confidence 55566677899999999999988999999999999999999999999999998888888888677778999998899999
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 278 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~ 278 (475)
+..+.+...++ .+....++....+|+.++|+.+..+..
T Consensus 241 E~~~k~~~fLr-~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 241 ECKEKLQPFLR-KLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred HHHHHHHHHHH-HhcccCCCCceeeecccccccchhhcc
Confidence 99999999888 777777777778899999988876544
No 491
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.92 E-value=0.058 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
...+|.|+|.+|||||||+++|+..
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999643
No 492
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.043 Score=62.78 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=28.4
Q ss_pred cccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHH----------cCCceEEEEEEccCCC
Q 011910 181 ASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT----------LGVTKLLLVVNKMDDH 233 (475)
Q Consensus 181 ~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~----------~~i~~iivviNKiD~~ 233 (475)
.+--|++|+.+|+.+-.. ...+.+ .+...++. ..+| +.|++||+|+.
T Consensus 212 ~~piNGiiltlsv~~L~~-----~~~~~~~~~~~~LR~RL~El~~tL~~~~P-VYl~lTk~Dll 269 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLT-----ADPAEREALARTLRARLQELRETLHARLP-VYLVLTKADLL 269 (1188)
T ss_pred CCCCceEEEEEEHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhccCCc-eEEEEeccccc
Confidence 345799999999876432 112222 12222221 2577 88999999994
No 493
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.91 E-value=0.023 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+.|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999543
No 494
>PRK07261 topology modulation protein; Provisional
Probab=94.91 E-value=0.021 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.3
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+|+|+|.+|||||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998433
No 495
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.90 E-value=0.018 Score=53.12 Aligned_cols=20 Identities=40% Similarity=0.346 Sum_probs=18.5
Q ss_pred eeEEEEecCCCCchhHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQI 102 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~L 102 (475)
-.++|+|++|||||||+.+|
T Consensus 29 evv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 496
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.89 E-value=0.02 Score=43.22 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.0
Q ss_pred eEEEEecCCCCchhHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll 103 (475)
.|++.|.+++||||+.+.|.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999983
No 497
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.85 E-value=0.019 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=20.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
+--.++++|+.|+|||||++.++.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 335789999999999999998754
No 498
>PRK08118 topology modulation protein; Reviewed
Probab=94.83 E-value=0.023 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.+|.|+|++|||||||...|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999865544
No 499
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.81 E-value=0.022 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHHHhc
Q 011910 85 VVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 85 v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
|.++|++|||||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999865444
No 500
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.81 E-value=0.018 Score=54.34 Aligned_cols=20 Identities=35% Similarity=0.307 Sum_probs=18.2
Q ss_pred eEEEEecCCCCchhHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll 103 (475)
-|+|+|++|+|||||++.+.
T Consensus 31 fvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999874
Done!