Query 011910
Match_columns 475
No_of_seqs 422 out of 3543
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 17:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 7.2E-73 2.5E-77 585.0 45.9 389 79-472 14-403 (439)
2 1r5b_A Eukaryotic peptide chai 100.0 2.4E-69 8.2E-74 562.9 28.5 389 79-472 40-431 (467)
3 3izq_1 HBS1P, elongation facto 100.0 6.7E-66 2.3E-70 551.2 36.2 386 79-471 164-571 (611)
4 1f60_A Elongation factor EEF1A 100.0 6.7E-65 2.3E-69 528.2 39.4 385 80-472 5-405 (458)
5 3mca_A HBS1, elongation factor 100.0 8.8E-66 3E-70 548.9 31.3 381 77-472 172-557 (592)
6 3p26_A Elongation factor 1 alp 100.0 7E-65 2.4E-69 532.3 36.3 386 79-471 30-437 (483)
7 1jny_A EF-1-alpha, elongation 100.0 2.1E-64 7.3E-69 521.9 38.2 387 80-472 4-393 (435)
8 1zun_B Sulfate adenylate trans 100.0 9.2E-60 3.1E-64 487.3 37.4 375 79-472 21-399 (434)
9 1d2e_A Elongation factor TU (E 100.0 4.7E-54 1.6E-58 439.6 33.4 346 81-472 2-357 (397)
10 2c78_A Elongation factor TU-A; 100.0 3.5E-53 1.2E-57 434.5 32.1 333 79-438 8-354 (405)
11 1wb1_A Translation elongation 100.0 7.2E-52 2.5E-56 432.4 17.1 339 79-472 16-359 (482)
12 1kk1_A EIF2gamma; initiation o 100.0 2.7E-49 9.1E-54 406.3 33.5 334 79-471 7-396 (410)
13 1s0u_A EIF-2-gamma, translatio 100.0 1.3E-49 4.4E-54 408.3 30.5 332 80-470 6-393 (408)
14 3avx_A Elongation factor TS, e 100.0 1.5E-49 5.2E-54 437.4 31.3 355 79-468 293-662 (1289)
15 2elf_A Protein translation elo 100.0 4.6E-49 1.6E-53 397.6 29.2 288 84-442 23-320 (370)
16 3sjy_A Translation initiation 100.0 1.8E-47 6.1E-52 391.8 30.2 342 79-467 5-385 (403)
17 3vqt_A RF-3, peptide chain rel 100.0 1.2E-39 4E-44 344.3 25.7 284 78-396 27-402 (548)
18 2ywe_A GTP-binding protein LEP 100.0 2.3E-37 7.9E-42 327.8 26.0 268 80-396 4-282 (600)
19 4fn5_A EF-G 1, elongation fact 100.0 1.5E-37 5.2E-42 338.7 23.8 279 79-396 10-406 (709)
20 3cb4_D GTP-binding protein LEP 100.0 3.1E-36 1.1E-40 319.8 27.1 268 80-396 2-280 (599)
21 3j25_A Tetracycline resistance 100.0 5.1E-39 1.7E-43 346.0 3.3 274 81-395 1-331 (638)
22 3tr5_A RF-3, peptide chain rel 100.0 3.1E-34 1.1E-38 301.4 25.0 280 80-394 11-382 (528)
23 2rdo_7 EF-G, elongation factor 100.0 4.6E-33 1.6E-37 302.3 27.4 274 79-395 7-402 (704)
24 2h5e_A Peptide chain release f 100.0 6.4E-33 2.2E-37 291.7 24.2 280 80-394 11-383 (529)
25 1dar_A EF-G, elongation factor 100.0 5.1E-32 1.7E-36 293.8 28.1 275 79-396 9-395 (691)
26 3izy_P Translation initiation 100.0 1.6E-34 5.5E-39 302.3 4.6 255 81-396 3-261 (537)
27 1zo1_I IF2, translation initia 100.0 2.2E-33 7.4E-38 291.4 11.8 250 80-395 2-259 (501)
28 2xex_A Elongation factor G; GT 100.0 2E-31 6.9E-36 289.2 26.1 275 78-395 6-394 (693)
29 2dy1_A Elongation factor G; tr 100.0 3E-31 1E-35 286.8 23.8 275 80-396 7-368 (665)
30 1g7s_A Translation initiation 100.0 1.2E-31 4.3E-36 284.8 20.4 263 80-396 3-330 (594)
31 3e1y_E Eukaryotic peptide chai 100.0 3E-31 1E-35 245.1 17.4 162 308-472 3-165 (204)
32 1n0u_A EF-2, elongation factor 100.0 1.5E-28 5.2E-33 271.7 23.9 290 79-395 16-474 (842)
33 2lkc_A Translation initiation 99.8 1.6E-20 5.6E-25 168.6 10.9 158 80-282 6-163 (178)
34 2hjg_A GTP-binding protein ENG 99.8 1.8E-19 6.2E-24 185.9 10.6 158 80-282 173-341 (436)
35 4dhe_A Probable GTP-binding pr 99.8 3.2E-19 1.1E-23 166.6 11.1 160 79-281 26-202 (223)
36 3iev_A GTP-binding protein ERA 99.8 8.7E-19 3E-23 172.5 14.8 155 80-282 8-174 (308)
37 2dyk_A GTP-binding protein; GT 99.8 1.3E-18 4.6E-23 153.2 14.0 145 83-281 2-153 (161)
38 1wf3_A GTP-binding protein; GT 99.8 2E-18 6.8E-23 169.2 14.4 149 81-281 6-164 (301)
39 4dcu_A GTP-binding protein ENG 99.8 6.9E-19 2.3E-23 182.6 11.7 158 80-282 193-361 (456)
40 2hxs_A RAB-26, RAS-related pro 99.8 3.3E-18 1.1E-22 153.5 13.7 154 80-282 4-165 (178)
41 3tw8_B RAS-related protein RAB 99.8 2.3E-18 8E-23 154.6 12.0 153 80-282 7-163 (181)
42 3i8s_A Ferrous iron transport 99.8 1.1E-18 3.8E-23 168.9 9.6 147 81-281 2-160 (274)
43 3tkl_A RAS-related protein RAB 99.8 4.5E-18 1.6E-22 155.1 13.0 153 80-282 14-171 (196)
44 2efe_B Small GTP-binding prote 99.8 6.6E-18 2.3E-22 151.9 13.8 154 80-281 10-166 (181)
45 4bas_A ADP-ribosylation factor 99.8 9E-18 3.1E-22 153.5 14.9 155 79-282 14-181 (199)
46 3iby_A Ferrous iron transport 99.8 1.2E-18 4E-23 166.9 9.3 145 83-281 2-158 (256)
47 1r2q_A RAS-related protein RAB 99.8 5E-18 1.7E-22 150.6 12.6 153 80-280 4-159 (170)
48 2h57_A ADP-ribosylation factor 99.8 3.9E-18 1.3E-22 155.2 12.1 156 79-282 18-179 (190)
49 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.7E-17 5.6E-22 148.7 16.0 153 80-282 5-166 (177)
50 1zj6_A ADP-ribosylation factor 99.8 6.9E-18 2.4E-22 153.1 13.6 153 79-281 13-169 (187)
51 2fg5_A RAB-22B, RAS-related pr 99.8 6.4E-18 2.2E-22 154.2 13.3 153 80-280 21-176 (192)
52 1g16_A RAS-related protein SEC 99.8 4.7E-18 1.6E-22 150.9 11.9 150 82-282 3-157 (170)
53 2p5s_A RAS and EF-hand domain 99.7 1.4E-18 4.6E-23 159.6 8.3 164 76-281 22-188 (199)
54 2y8e_A RAB-protein 6, GH09086P 99.7 9.5E-18 3.3E-22 150.3 13.7 151 80-280 12-167 (179)
55 2fu5_C RAS-related protein RAB 99.7 3.8E-18 1.3E-22 154.0 11.0 153 80-282 6-163 (183)
56 2bme_A RAB4A, RAS-related prot 99.7 6.1E-18 2.1E-22 152.9 12.3 153 80-282 8-165 (186)
57 3a1s_A Iron(II) transport prot 99.7 2.8E-18 9.4E-23 164.6 10.5 149 80-282 3-159 (258)
58 3clv_A RAB5 protein, putative; 99.7 1E-17 3.5E-22 153.3 13.9 103 160-282 93-196 (208)
59 1upt_A ARL1, ADP-ribosylation 99.7 1.7E-17 5.7E-22 147.7 14.9 152 80-282 5-161 (171)
60 3cph_A RAS-related protein SEC 99.7 6.8E-18 2.3E-22 156.1 12.6 152 80-282 18-174 (213)
61 1ega_A Protein (GTP-binding pr 99.7 4.7E-18 1.6E-22 166.7 12.0 153 80-282 6-167 (301)
62 2gf9_A RAS-related protein RAB 99.7 8.1E-18 2.8E-22 152.9 12.7 155 80-282 20-177 (189)
63 1z0f_A RAB14, member RAS oncog 99.7 3.6E-18 1.2E-22 153.1 10.0 154 80-281 13-169 (179)
64 1ek0_A Protein (GTP-binding pr 99.7 1.2E-17 4.1E-22 148.1 13.3 155 81-280 2-159 (170)
65 2g6b_A RAS-related protein RAB 99.7 1.1E-17 3.7E-22 150.3 13.0 154 80-282 8-166 (180)
66 3k53_A Ferrous iron transport 99.7 3.8E-18 1.3E-22 164.8 10.6 148 81-282 2-158 (271)
67 2oil_A CATX-8, RAS-related pro 99.7 5.2E-18 1.8E-22 154.6 10.9 156 79-282 22-180 (193)
68 1zd9_A ADP-ribosylation factor 99.7 1.6E-17 5.4E-22 151.0 14.0 154 79-281 19-176 (188)
69 2hup_A RAS-related protein RAB 99.7 1.5E-17 5.1E-22 153.1 13.9 155 79-282 26-185 (201)
70 3bc1_A RAS-related protein RAB 99.7 1.6E-17 5.6E-22 150.7 13.6 153 80-282 9-177 (195)
71 2il1_A RAB12; G-protein, GDP, 99.7 1.4E-17 4.8E-22 152.0 13.0 154 80-282 24-182 (192)
72 3t1o_A Gliding protein MGLA; G 99.7 7.5E-18 2.5E-22 153.5 11.0 160 79-282 11-184 (198)
73 1z0j_A RAB-22, RAS-related pro 99.7 1.7E-17 5.8E-22 147.3 13.0 154 80-281 4-160 (170)
74 2h17_A ADP-ribosylation factor 99.7 1.4E-17 4.9E-22 150.3 12.7 152 79-280 18-173 (181)
75 4dsu_A GTPase KRAS, isoform 2B 99.7 5.8E-18 2E-22 153.2 10.0 150 81-282 3-158 (189)
76 1kao_A RAP2A; GTP-binding prot 99.7 4.5E-18 1.5E-22 150.3 9.0 151 81-282 2-158 (167)
77 1ksh_A ARF-like protein 2; sma 99.7 1.3E-17 4.5E-22 150.9 12.2 153 80-282 16-172 (186)
78 1vg8_A RAS-related protein RAB 99.7 1.7E-17 5.7E-22 152.8 13.0 153 80-282 6-167 (207)
79 1svi_A GTP-binding protein YSX 99.7 1.4E-17 5E-22 151.7 12.3 155 79-282 20-187 (195)
80 1z08_A RAS-related protein RAB 99.7 9.1E-18 3.1E-22 149.2 10.6 153 80-282 4-161 (170)
81 2wji_A Ferrous iron transport 99.7 1.3E-17 4.5E-22 148.4 11.6 146 82-281 3-156 (165)
82 1zbd_A Rabphilin-3A; G protein 99.7 2.3E-17 7.8E-22 151.6 13.5 155 80-282 6-163 (203)
83 1r8s_A ADP-ribosylation factor 99.7 4.1E-17 1.4E-21 144.2 14.7 149 83-281 1-153 (164)
84 3pqc_A Probable GTP-binding pr 99.7 1.3E-17 4.4E-22 151.7 11.7 154 79-282 20-186 (195)
85 1z2a_A RAS-related protein RAB 99.7 1.2E-17 4E-22 148.0 11.1 152 81-282 4-159 (168)
86 2ew1_A RAS-related protein RAB 99.7 1.4E-17 4.7E-22 153.6 12.0 153 80-282 24-181 (201)
87 2b6h_A ADP-ribosylation factor 99.7 2.7E-17 9.2E-22 150.3 13.7 155 77-281 24-182 (192)
88 1x3s_A RAS-related protein RAB 99.7 1.5E-17 5.2E-22 151.4 12.0 154 80-282 13-170 (195)
89 1u8z_A RAS-related protein RAL 99.7 1.9E-17 6.3E-22 146.5 12.1 151 81-282 3-159 (168)
90 3llu_A RAS-related GTP-binding 99.7 3.8E-17 1.3E-21 149.6 14.5 166 77-281 15-188 (196)
91 1m2o_B GTP-binding protein SAR 99.7 4.1E-17 1.4E-21 148.8 14.6 157 80-281 21-183 (190)
92 2ce2_X GTPase HRAS; signaling 99.7 3.8E-17 1.3E-21 144.0 13.8 149 82-282 3-157 (166)
93 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.2E-17 7.4E-22 149.0 12.4 159 81-281 4-171 (186)
94 2a5j_A RAS-related protein RAB 99.7 1.6E-17 5.6E-22 151.3 11.6 154 79-282 18-176 (191)
95 3qq5_A Small GTP-binding prote 99.7 2.9E-18 1E-22 174.9 7.3 149 80-282 32-188 (423)
96 2o52_A RAS-related protein RAB 99.7 1E-17 3.6E-22 154.0 10.3 153 80-282 23-180 (200)
97 2nzj_A GTP-binding protein REM 99.7 1.7E-17 5.7E-22 148.3 11.2 153 81-282 3-161 (175)
98 1f6b_A SAR1; gtpases, N-termin 99.7 4E-17 1.4E-21 149.9 14.1 153 80-281 23-190 (198)
99 1mky_A Probable GTP-binding pr 99.7 5.7E-17 2E-21 167.3 16.8 147 83-282 2-158 (439)
100 1ky3_A GTP-binding protein YPT 99.7 1.7E-17 5.9E-22 149.0 11.3 155 80-282 6-170 (182)
101 1c1y_A RAS-related protein RAP 99.7 2.2E-17 7.5E-22 146.1 11.7 154 81-282 2-159 (167)
102 2bcg_Y Protein YP2, GTP-bindin 99.7 2.2E-17 7.4E-22 152.2 11.9 153 80-282 6-163 (206)
103 1moz_A ARL1, ADP-ribosylation 99.7 1E-17 3.6E-22 151.0 9.5 153 80-282 16-172 (183)
104 2gco_A H9, RHO-related GTP-bin 99.7 1.4E-17 4.9E-22 153.1 10.5 161 78-282 21-192 (201)
105 4gzl_A RAS-related C3 botulinu 99.7 1.7E-17 5.8E-22 153.1 10.9 159 79-281 27-196 (204)
106 3dz8_A RAS-related protein RAB 99.7 9.3E-18 3.2E-22 152.9 8.8 156 79-282 20-178 (191)
107 1fzq_A ADP-ribosylation factor 99.7 5.5E-17 1.9E-21 146.7 13.7 152 80-281 14-169 (181)
108 2fh5_B SR-beta, signal recogni 99.7 4.2E-17 1.4E-21 151.2 13.2 158 80-281 5-207 (214)
109 2bov_A RAla, RAS-related prote 99.7 5E-17 1.7E-21 149.3 13.4 153 79-282 11-169 (206)
110 3t5g_A GTP-binding protein RHE 99.7 1.8E-17 6.1E-22 149.3 10.0 152 80-282 4-161 (181)
111 2x77_A ADP-ribosylation factor 99.7 2E-17 6.7E-22 150.3 10.1 153 80-282 20-176 (189)
112 2fn4_A P23, RAS-related protei 99.7 2.7E-17 9.3E-22 147.5 10.8 153 79-282 6-164 (181)
113 3oes_A GTPase rhebl1; small GT 99.7 1.9E-17 6.5E-22 152.2 9.9 156 78-282 20-179 (201)
114 2erx_A GTP-binding protein DI- 99.7 7E-17 2.4E-21 143.4 13.3 150 82-280 3-157 (172)
115 3cpj_B GTP-binding protein YPT 99.7 2.2E-17 7.7E-22 154.4 10.5 153 80-282 11-168 (223)
116 2f7s_A C25KG, RAS-related prot 99.7 1.2E-17 4E-22 155.3 8.2 153 80-282 23-191 (217)
117 2atx_A Small GTP binding prote 99.7 3.8E-17 1.3E-21 149.0 11.4 159 80-282 16-185 (194)
118 2a9k_A RAS-related protein RAL 99.7 5.4E-17 1.8E-21 146.4 12.2 153 79-282 15-173 (187)
119 3gj0_A GTP-binding nuclear pro 99.7 2.1E-17 7.3E-22 154.2 9.9 155 78-282 11-167 (221)
120 2wjg_A FEOB, ferrous iron tran 99.7 2.7E-17 9.4E-22 149.0 9.8 148 81-282 6-161 (188)
121 2fv8_A H6, RHO-related GTP-bin 99.7 8.3E-17 2.8E-21 148.7 13.1 164 76-282 19-192 (207)
122 3kkq_A RAS-related protein M-R 99.7 5.1E-17 1.8E-21 146.5 11.4 153 79-282 15-174 (183)
123 3q72_A GTP-binding protein RAD 99.7 6.2E-17 2.1E-21 143.3 11.6 151 82-282 2-156 (166)
124 1z06_A RAS-related protein RAB 99.7 2.3E-17 7.8E-22 149.9 9.0 151 80-280 18-178 (189)
125 3con_A GTPase NRAS; structural 99.7 1.2E-16 4.1E-21 145.1 13.6 151 80-282 19-175 (190)
126 2gf0_A GTP-binding protein DI- 99.7 1.9E-16 6.4E-21 144.7 14.6 151 81-281 7-162 (199)
127 2xtp_A GTPase IMAP family memb 99.7 2.3E-17 7.8E-22 158.2 8.4 160 80-282 20-200 (260)
128 2yc2_C IFT27, small RAB-relate 99.7 5.6E-17 1.9E-21 149.2 10.7 156 80-282 18-184 (208)
129 3q85_A GTP-binding protein REM 99.7 1.4E-16 4.7E-21 141.5 12.6 151 82-282 2-159 (169)
130 3reg_A RHO-like small GTPase; 99.7 8.5E-17 2.9E-21 146.8 11.5 156 79-282 20-180 (194)
131 4djt_A GTP-binding nuclear pro 99.7 2E-17 6.8E-22 153.9 7.2 153 80-282 9-167 (218)
132 1mky_A Probable GTP-binding pr 99.7 8E-17 2.7E-21 166.2 12.4 157 81-282 179-347 (439)
133 2hjg_A GTP-binding protein ENG 99.7 3.2E-17 1.1E-21 169.1 9.4 145 83-281 4-156 (436)
134 3r7w_A Gtpase1, GTP-binding pr 99.7 1.6E-16 5.6E-21 156.2 13.8 161 82-280 3-171 (307)
135 3b1v_A Ferrous iron uptake tra 99.7 4.5E-17 1.5E-21 157.2 9.3 145 82-281 3-155 (272)
136 2j1l_A RHO-related GTP-binding 99.7 9.7E-17 3.3E-21 149.1 10.9 159 80-282 32-201 (214)
137 3bwd_D RAC-like GTP-binding pr 99.7 7.9E-17 2.7E-21 144.9 10.0 158 80-281 6-172 (182)
138 2qu8_A Putative nucleolar GTP- 99.7 2.9E-16 1E-20 147.4 14.2 160 80-282 27-197 (228)
139 2gj8_A MNME, tRNA modification 99.7 9.5E-17 3.2E-21 144.0 10.2 144 82-282 4-158 (172)
140 2q3h_A RAS homolog gene family 99.7 1.8E-16 6.3E-21 145.3 11.8 158 78-282 16-187 (201)
141 3o47_A ADP-ribosylation factor 99.7 7.5E-17 2.6E-21 160.1 9.7 154 79-282 162-319 (329)
142 3l0i_B RAS-related protein RAB 99.7 4.7E-18 1.6E-22 156.0 0.8 151 80-280 31-186 (199)
143 3gee_A MNME, tRNA modification 99.7 3.4E-16 1.2E-20 162.3 14.5 150 81-282 232-390 (476)
144 2j0v_A RAC-like GTP-binding pr 99.7 1.7E-16 5.9E-21 146.8 10.8 156 80-282 7-172 (212)
145 4dkx_A RAS-related protein RAB 99.7 4.3E-16 1.5E-20 145.2 13.2 153 80-282 11-168 (216)
146 3q3j_B RHO-related GTP-binding 99.7 3.5E-16 1.2E-20 145.5 12.4 165 77-282 22-195 (214)
147 4dcu_A GTP-binding protein ENG 99.7 1.4E-16 4.7E-21 165.3 8.9 148 80-281 21-176 (456)
148 3ihw_A Centg3; RAS, centaurin, 99.6 7.6E-16 2.6E-20 139.6 11.9 151 78-282 16-172 (184)
149 2atv_A RERG, RAS-like estrogen 99.6 4.1E-16 1.4E-20 142.5 10.0 154 79-282 25-183 (196)
150 1m7b_A RND3/RHOE small GTP-bin 99.6 5.1E-16 1.7E-20 140.4 10.2 158 80-282 5-175 (184)
151 3cbq_A GTP-binding protein REM 99.6 1.2E-15 4.1E-20 139.7 12.7 154 79-282 20-180 (195)
152 3th5_A RAS-related C3 botulinu 99.4 2E-17 6.9E-22 152.3 0.0 163 78-282 26-197 (204)
153 1xzp_A Probable tRNA modificat 99.6 7.2E-16 2.5E-20 159.9 11.3 146 82-282 243-397 (482)
154 3lxw_A GTPase IMAP family memb 99.6 8.6E-16 2.9E-20 146.2 10.8 154 80-282 19-200 (247)
155 3c5c_A RAS-like protein 12; GD 99.6 1.4E-15 4.8E-20 138.1 11.5 154 79-282 18-178 (187)
156 1gwn_A RHO-related GTP-binding 99.6 9.5E-16 3.2E-20 141.6 10.2 159 79-282 25-196 (205)
157 3lvq_E ARF-GAP with SH3 domain 99.6 1.7E-15 5.8E-20 158.8 13.3 154 79-282 319-476 (497)
158 2iwr_A Centaurin gamma 1; ANK 99.6 1.8E-15 6.2E-20 135.7 11.7 149 80-282 5-161 (178)
159 2cxx_A Probable GTP-binding pr 99.6 3.7E-16 1.3E-20 141.5 6.8 155 83-282 2-176 (190)
160 3geh_A MNME, tRNA modification 99.6 8.3E-16 2.8E-20 158.8 9.4 146 81-282 223-376 (462)
161 2qtf_A Protein HFLX, GTP-bindi 99.6 4.9E-15 1.7E-19 148.7 13.9 156 81-282 178-346 (364)
162 1lnz_A SPO0B-associated GTP-bi 99.6 6.6E-16 2.3E-20 153.5 7.3 154 80-282 156-322 (342)
163 3t5d_A Septin-7; GTP-binding p 99.6 3.2E-15 1.1E-19 144.5 11.5 159 81-281 7-195 (274)
164 2wkq_A NPH1-1, RAS-related C3 99.6 3.6E-15 1.2E-19 147.5 11.8 159 80-282 153-322 (332)
165 1nrj_B SR-beta, signal recogni 99.6 2E-15 7E-20 140.2 8.4 150 80-277 10-171 (218)
166 3lxx_A GTPase IMAP family memb 99.6 1.5E-14 5.3E-19 136.7 12.4 159 78-280 25-204 (239)
167 2zej_A Dardarin, leucine-rich 99.6 8.7E-15 3E-19 132.4 9.6 159 83-282 3-170 (184)
168 2e87_A Hypothetical protein PH 99.5 3.5E-14 1.2E-18 142.4 13.0 153 80-282 165-328 (357)
169 1h65_A Chloroplast outer envel 99.5 6.1E-14 2.1E-18 135.2 14.0 118 80-234 37-168 (270)
170 3def_A T7I23.11 protein; chlor 99.5 1.3E-14 4.4E-19 139.3 9.2 117 80-233 34-164 (262)
171 3dpu_A RAB family protein; roc 99.5 1.4E-14 4.6E-19 153.3 9.6 153 79-282 38-200 (535)
172 2g3y_A GTP-binding protein GEM 99.5 3.1E-14 1.1E-18 132.1 10.7 154 80-282 35-195 (211)
173 2cjw_A GTP-binding protein GEM 99.5 7.3E-14 2.5E-18 127.4 11.9 153 81-282 5-164 (192)
174 2aka_B Dynamin-1; fusion prote 99.5 5.9E-14 2E-18 136.9 11.1 107 159-282 124-245 (299)
175 2f9l_A RAB11B, member RAS onco 99.5 1.2E-13 4.1E-18 126.5 12.1 152 81-282 4-160 (199)
176 3r7w_B Gtpase2, GTP-binding pr 99.5 9.9E-14 3.4E-18 135.8 10.7 182 84-303 1-188 (331)
177 1jwy_B Dynamin A GTPase domain 99.5 5E-14 1.7E-18 138.6 8.1 70 158-234 129-212 (315)
178 1pui_A ENGB, probable GTP-bind 99.5 3.2E-13 1.1E-17 124.4 12.9 157 78-282 22-191 (210)
179 2ged_A SR-beta, signal recogni 99.4 1.5E-13 5.3E-18 124.7 8.6 115 80-236 46-172 (193)
180 2qag_A Septin-2, protein NEDD5 99.4 1.3E-13 4.5E-18 138.3 8.1 159 80-280 35-223 (361)
181 1wxq_A GTP-binding protein; st 99.4 4.6E-13 1.6E-17 135.8 12.1 37 160-196 71-114 (397)
182 1oix_A RAS-related protein RAB 99.4 6.9E-13 2.4E-17 120.7 11.8 152 80-281 27-183 (191)
183 3p32_A Probable GTPase RV1496/ 99.4 3E-13 1E-17 135.6 9.0 107 157-282 169-276 (355)
184 2j69_A Bacterial dynamin-like 99.4 4.1E-13 1.4E-17 145.6 10.7 114 160-282 174-317 (695)
185 2p67_A LAO/AO transport system 99.4 5.7E-13 1.9E-17 132.7 8.5 107 157-282 146-253 (341)
186 3c5h_A Glucocorticoid receptor 99.4 4.4E-13 1.5E-17 128.0 6.1 80 183-282 162-247 (255)
187 1udx_A The GTP-binding protein 99.4 1.7E-12 5.8E-17 132.0 10.3 155 80-283 155-318 (416)
188 2wsm_A Hydrogenase expression/ 99.3 3.6E-13 1.2E-17 125.3 4.6 166 79-282 27-206 (221)
189 2www_A Methylmalonic aciduria 99.3 2.3E-12 7.8E-17 128.7 8.5 107 157-282 164-271 (349)
190 3t34_A Dynamin-related protein 99.3 3.4E-12 1.2E-16 128.1 8.5 104 159-280 135-251 (360)
191 2qpt_A EH domain-containing pr 99.3 7.9E-12 2.7E-16 131.9 10.4 79 160-250 154-244 (550)
192 3zvr_A Dynamin-1; hydrolase, D 99.3 1.3E-11 4.3E-16 133.4 11.3 106 159-282 149-270 (772)
193 2x2e_A Dynamin-1; nitration, h 99.3 6.5E-12 2.2E-16 125.7 8.1 107 159-282 129-250 (353)
194 1yrb_A ATP(GTP)binding protein 99.2 4.8E-11 1.6E-15 113.8 10.0 115 159-282 108-249 (262)
195 1xe1_A Hypothetical protein PF 99.1 2.8E-10 9.5E-15 92.4 9.2 80 309-392 32-113 (116)
196 4a9a_A Ribosome-interacting GT 99.1 1.6E-10 5.5E-15 115.6 8.5 113 80-232 70-194 (376)
197 1jal_A YCHF protein; nucleotid 99.0 7.4E-10 2.5E-14 110.2 11.0 82 83-195 3-108 (363)
198 2dby_A GTP-binding protein; GD 99.0 9.1E-10 3.1E-14 110.2 10.8 37 159-195 68-111 (368)
199 2qm8_A GTPase/ATPase; G protei 99.0 7.8E-10 2.7E-14 109.7 9.8 108 157-282 145-253 (337)
200 2qnr_A Septin-2, protein NEDD5 99.0 1.2E-09 4.1E-14 106.6 9.8 79 184-282 127-206 (301)
201 2hf9_A Probable hydrogenase ni 99.0 1.3E-09 4.3E-14 101.5 9.0 99 159-282 118-216 (226)
202 2qag_C Septin-7; cell cycle, c 99.0 1.4E-09 4.8E-14 110.5 9.9 159 80-280 29-217 (418)
203 3ohm_A Guanine nucleotide-bind 98.9 4.2E-09 1.4E-13 103.4 12.2 135 144-282 151-310 (327)
204 2j37_W Signal recognition part 98.9 1E-09 3.4E-14 114.0 7.2 66 158-233 182-253 (504)
205 4fid_A G protein alpha subunit 98.9 4.1E-09 1.4E-13 103.9 9.9 135 144-282 145-320 (340)
206 1cip_A Protein (guanine nucleo 98.7 2.5E-08 8.5E-13 99.3 9.6 135 144-282 177-336 (353)
207 2qag_B Septin-6, protein NEDD5 98.7 5.3E-08 1.8E-12 98.6 9.7 140 79-258 39-210 (427)
208 3ec1_A YQEH GTPase; atnos1, at 98.6 3.5E-09 1.2E-13 106.3 0.4 149 83-280 163-321 (369)
209 1zcb_A G alpha I/13; GTP-bindi 98.6 8.9E-08 3E-12 95.6 9.2 134 145-282 186-345 (362)
210 3sop_A Neuronal-specific septi 98.6 1.8E-07 6.2E-12 89.6 10.8 63 183-258 111-174 (270)
211 3h2y_A GTPase family protein; 98.6 6.9E-09 2.4E-13 104.1 0.9 150 83-280 161-320 (368)
212 2v3c_C SRP54, signal recogniti 98.6 9.3E-08 3.2E-12 97.7 8.4 66 158-233 179-251 (432)
213 1tq4_A IIGP1, interferon-induc 98.6 5.2E-07 1.8E-11 91.4 13.7 160 81-281 68-244 (413)
214 3dm5_A SRP54, signal recogniti 98.5 5.3E-07 1.8E-11 91.7 12.9 96 158-281 181-282 (443)
215 2ohf_A Protein OLA1, GTP-bindi 98.5 9.6E-08 3.3E-12 95.9 6.4 84 81-195 21-128 (396)
216 3kl4_A SRP54, signal recogniti 98.5 5.5E-07 1.9E-11 91.6 11.1 94 158-280 178-280 (433)
217 1u0l_A Probable GTPase ENGC; p 98.4 2.7E-07 9.3E-12 89.9 6.7 102 161-282 64-165 (301)
218 1j8m_F SRP54, signal recogniti 98.4 1.9E-06 6.6E-11 83.5 11.8 96 158-281 179-282 (297)
219 1azs_C GS-alpha; complex (lyas 98.3 1.3E-06 4.4E-11 88.1 9.9 83 146-232 203-296 (402)
220 2xtz_A Guanine nucleotide-bind 98.3 1.4E-06 4.9E-11 86.5 8.6 71 158-232 181-262 (354)
221 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1.8E-06 6.2E-11 86.8 7.3 84 82-195 20-127 (392)
222 1puj_A YLQF, conserved hypothe 98.2 2.5E-06 8.5E-11 82.2 7.4 95 164-282 3-98 (282)
223 3e70_C DPA, signal recognition 98.1 7.8E-06 2.7E-10 80.3 9.9 94 159-281 211-311 (328)
224 2xxa_A Signal recognition part 98.1 2.9E-06 9.9E-11 86.6 6.7 65 158-233 182-253 (433)
225 2yv5_A YJEQ protein; hydrolase 98.1 2.4E-06 8.1E-11 83.2 5.7 96 170-282 66-161 (302)
226 1f5n_A Interferon-induced guan 98.0 3E-06 1E-10 89.4 3.7 26 79-104 35-60 (592)
227 2yhs_A FTSY, cell division pro 97.8 3.4E-05 1.2E-09 79.3 8.2 64 158-232 374-450 (503)
228 3cnl_A YLQF, putative uncharac 97.8 3.8E-05 1.3E-09 73.0 7.8 87 168-281 5-92 (262)
229 1puj_A YLQF, conserved hypothe 97.8 2E-05 6.7E-10 75.8 5.1 25 80-104 118-142 (282)
230 1d1n_A Initiation factor 2; be 97.7 2.9E-05 9.9E-10 61.2 5.0 77 314-392 9-90 (99)
231 3ec1_A YQEH GTPase; atnos1, at 97.7 3.6E-05 1.2E-09 77.0 6.3 104 162-282 51-154 (369)
232 3l82_B F-box only protein 4; T 97.7 6.8E-05 2.3E-09 68.0 7.4 94 169-280 111-213 (227)
233 1t9h_A YLOQ, probable GTPase E 97.7 5.3E-05 1.8E-09 73.6 7.1 87 180-282 83-169 (307)
234 2crv_A IF-2MT, translation ini 97.7 0.00013 4.4E-09 59.6 8.0 80 313-393 12-99 (120)
235 3h2y_A GTPase family protein; 97.7 2.7E-05 9.2E-10 77.9 4.7 98 169-282 55-152 (368)
236 1rj9_A FTSY, signal recognitio 97.7 9.2E-05 3.2E-09 71.9 8.3 64 159-233 184-260 (304)
237 3szr_A Interferon-induced GTP- 97.5 0.00015 5.2E-09 77.3 8.1 23 82-104 45-67 (608)
238 2ffh_A Protein (FFH); SRP54, s 97.5 0.00015 5E-09 73.6 7.1 64 158-232 179-249 (425)
239 1vma_A Cell division protein F 97.5 0.00028 9.7E-09 68.5 8.7 26 80-105 102-127 (306)
240 1zu4_A FTSY; GTPase, signal re 97.4 0.00027 9.1E-09 69.1 7.6 26 80-105 103-128 (320)
241 3cnl_A YLQF, putative uncharac 97.4 6.5E-05 2.2E-09 71.4 2.6 21 83-103 100-120 (262)
242 2px0_A Flagellar biosynthesis 97.3 0.0002 6.8E-09 69.3 5.9 66 158-233 181-252 (296)
243 3l2o_B F-box only protein 4; s 97.2 0.00049 1.7E-08 65.5 7.0 96 167-280 194-298 (312)
244 1zo1_I IF2, translation initia 97.1 0.0014 4.9E-08 67.7 9.9 95 297-393 394-493 (501)
245 3b9q_A Chloroplast SRP recepto 97.1 0.0014 4.9E-08 63.4 9.2 25 81-105 99-123 (302)
246 4dzz_A Plasmid partitioning pr 97.1 0.0016 5.4E-08 58.7 8.8 64 158-232 74-142 (206)
247 2rcn_A Probable GTPase ENGC; Y 97.0 0.0012 3.9E-08 65.4 7.8 84 180-281 127-210 (358)
248 2og2_A Putative signal recogni 97.0 0.0016 5.5E-08 64.5 8.5 25 81-105 156-180 (359)
249 3q5d_A Atlastin-1; G protein, 97.0 0.0022 7.7E-08 65.2 9.4 27 79-105 64-90 (447)
250 1ls1_A Signal recognition part 96.9 0.0017 5.7E-08 62.7 7.4 64 158-232 179-249 (295)
251 3izy_P Translation initiation 96.6 0.0039 1.3E-07 65.0 8.2 96 294-391 430-534 (537)
252 3cwq_A Para family chromosome 96.6 0.0065 2.2E-07 55.2 8.6 65 158-232 66-132 (209)
253 1g7s_A Translation initiation 96.4 0.014 4.8E-07 61.7 11.3 82 311-393 463-549 (594)
254 3k9g_A PF-32 protein; ssgcid, 96.1 0.07 2.4E-06 50.0 13.2 65 158-232 143-209 (267)
255 3end_A Light-independent proto 95.9 0.014 4.7E-07 56.3 7.4 67 158-232 155-225 (307)
256 1t9h_A YLOQ, probable GTPase E 95.8 0.0033 1.1E-07 60.8 2.2 22 83-104 174-195 (307)
257 4ido_A Atlastin-1; GTPase, GTP 95.5 0.06 2.1E-06 54.6 10.3 133 79-231 64-220 (457)
258 2yv5_A YJEQ protein; hydrolase 95.4 0.012 4.1E-07 56.8 4.7 21 83-103 166-186 (302)
259 1ye8_A Protein THEP1, hypothet 95.3 0.0092 3.1E-07 52.9 3.2 23 84-106 2-24 (178)
260 1lvg_A Guanylate kinase, GMP k 95.1 0.0094 3.2E-07 53.6 2.7 23 83-105 5-27 (198)
261 1kgd_A CASK, peripheral plasma 95.1 0.011 3.9E-07 52.1 3.2 23 83-105 6-28 (180)
262 3c8u_A Fructokinase; YP_612366 94.8 0.018 6.2E-07 52.0 3.7 27 80-106 20-46 (208)
263 3a00_A Guanylate kinase, GMP k 94.7 0.014 4.9E-07 51.7 2.8 23 83-105 2-24 (186)
264 2ph1_A Nucleotide-binding prot 94.7 0.049 1.7E-06 51.1 6.7 68 158-232 127-194 (262)
265 3tr0_A Guanylate kinase, GMP k 94.7 0.015 5.1E-07 52.1 2.9 23 83-105 8-30 (205)
266 3kjh_A CO dehydrogenase/acetyl 94.7 0.045 1.5E-06 50.5 6.2 66 158-232 130-195 (254)
267 1znw_A Guanylate kinase, GMP k 94.6 0.015 5.2E-07 52.5 2.7 23 83-105 21-43 (207)
268 1kag_A SKI, shikimate kinase I 94.5 0.018 6.2E-07 50.1 2.9 25 83-107 5-29 (173)
269 3asz_A Uridine kinase; cytidin 94.5 0.022 7.5E-07 51.4 3.5 26 82-107 6-31 (211)
270 1z6g_A Guanylate kinase; struc 94.5 0.017 5.7E-07 52.8 2.7 24 82-105 23-46 (218)
271 3ney_A 55 kDa erythrocyte memb 94.4 0.022 7.5E-07 51.3 3.3 26 81-106 18-43 (197)
272 1zp6_A Hypothetical protein AT 94.4 0.019 6.4E-07 50.9 2.7 23 83-105 10-32 (191)
273 4gp7_A Metallophosphoesterase; 94.4 0.017 6E-07 50.5 2.5 21 83-103 10-30 (171)
274 3kb2_A SPBC2 prophage-derived 94.3 0.023 7.9E-07 49.1 3.2 25 83-107 2-26 (173)
275 1htw_A HI0065; nucleotide-bind 94.3 0.02 7E-07 49.6 2.7 24 82-105 33-56 (158)
276 4eun_A Thermoresistant glucoki 94.3 0.024 8.4E-07 50.8 3.4 27 82-108 29-55 (200)
277 3tau_A Guanylate kinase, GMP k 94.3 0.023 8E-07 51.4 3.2 26 81-106 7-32 (208)
278 1s96_A Guanylate kinase, GMP k 94.3 0.021 7.3E-07 52.3 2.9 24 83-106 17-40 (219)
279 1knq_A Gluconate kinase; ALFA/ 94.2 0.03 1E-06 48.8 3.7 27 82-108 8-34 (175)
280 3t61_A Gluconokinase; PSI-biol 94.1 0.027 9.3E-07 50.5 3.3 26 82-107 18-43 (202)
281 2bbw_A Adenylate kinase 4, AK4 94.1 0.026 9E-07 52.4 3.3 28 82-109 27-54 (246)
282 1g3q_A MIND ATPase, cell divis 94.1 0.067 2.3E-06 49.0 6.0 65 159-232 111-175 (237)
283 1bif_A 6-phosphofructo-2-kinas 94.0 0.0083 2.8E-07 61.7 -0.5 26 80-105 37-62 (469)
284 3lw7_A Adenylate kinase relate 93.9 0.028 9.6E-07 48.5 2.9 24 83-107 2-25 (179)
285 3tif_A Uncharacterized ABC tra 93.9 0.024 8E-07 52.6 2.4 22 83-104 32-53 (235)
286 1ex7_A Guanylate kinase; subst 93.8 0.03 1E-06 49.9 2.9 23 83-105 2-24 (186)
287 3b85_A Phosphate starvation-in 93.8 0.03 1E-06 50.8 3.0 23 83-105 23-45 (208)
288 2j41_A Guanylate kinase; GMP, 93.8 0.032 1.1E-06 49.9 3.1 23 83-105 7-29 (207)
289 1cke_A CK, MSSA, protein (cyti 93.8 0.033 1.1E-06 50.8 3.2 25 83-107 6-30 (227)
290 2pcj_A ABC transporter, lipopr 93.8 0.027 9.2E-07 51.8 2.6 20 84-103 32-51 (224)
291 1np6_A Molybdopterin-guanine d 93.8 0.034 1.2E-06 49.0 3.1 23 82-104 6-28 (174)
292 3trf_A Shikimate kinase, SK; a 93.8 0.035 1.2E-06 48.8 3.2 26 82-107 5-30 (185)
293 3vaa_A Shikimate kinase, SK; s 93.7 0.037 1.3E-06 49.5 3.3 27 81-107 24-50 (199)
294 1hyq_A MIND, cell division inh 93.6 0.081 2.8E-06 49.4 5.7 65 159-232 110-174 (263)
295 1xjc_A MOBB protein homolog; s 93.6 0.038 1.3E-06 48.4 3.2 24 81-104 3-26 (169)
296 2bdt_A BH3686; alpha-beta prot 93.6 0.03 1E-06 49.5 2.6 21 84-104 4-24 (189)
297 2jeo_A Uridine-cytidine kinase 93.6 0.042 1.4E-06 51.0 3.6 28 81-108 24-51 (245)
298 2onk_A Molybdate/tungstate ABC 93.5 0.032 1.1E-06 51.9 2.7 22 83-104 25-46 (240)
299 2eyu_A Twitching motility prot 93.5 0.037 1.3E-06 52.2 3.1 23 82-104 25-47 (261)
300 2jaq_A Deoxyguanosine kinase; 93.5 0.041 1.4E-06 49.0 3.3 24 84-107 2-25 (205)
301 2qor_A Guanylate kinase; phosp 93.5 0.037 1.3E-06 49.7 3.0 26 81-106 11-36 (204)
302 2i3b_A HCR-ntpase, human cance 93.5 0.038 1.3E-06 49.4 3.0 22 84-105 3-24 (189)
303 2v9p_A Replication protein E1; 93.4 0.035 1.2E-06 53.5 2.9 25 81-105 125-149 (305)
304 1ukz_A Uridylate kinase; trans 93.4 0.047 1.6E-06 48.8 3.6 29 79-107 12-40 (203)
305 1tev_A UMP-CMP kinase; ploop, 93.4 0.046 1.6E-06 48.2 3.4 26 82-107 3-28 (196)
306 2rhm_A Putative kinase; P-loop 93.4 0.05 1.7E-06 48.0 3.6 26 82-107 5-30 (193)
307 3cm0_A Adenylate kinase; ATP-b 93.4 0.051 1.7E-06 47.7 3.6 26 82-107 4-29 (186)
308 2rcn_A Probable GTPase ENGC; Y 93.3 0.035 1.2E-06 54.7 2.8 21 84-104 217-237 (358)
309 3la6_A Tyrosine-protein kinase 93.3 0.17 5.9E-06 48.1 7.6 65 160-232 202-266 (286)
310 1nks_A Adenylate kinase; therm 93.3 0.046 1.6E-06 48.1 3.3 25 83-107 2-26 (194)
311 2cbz_A Multidrug resistance-as 93.3 0.036 1.2E-06 51.4 2.6 21 83-103 32-52 (237)
312 2pze_A Cystic fibrosis transme 93.3 0.037 1.2E-06 51.0 2.6 20 84-103 36-55 (229)
313 1mv5_A LMRA, multidrug resista 93.2 0.037 1.3E-06 51.5 2.6 22 83-104 29-50 (243)
314 4g1u_C Hemin import ATP-bindin 93.2 0.035 1.2E-06 52.4 2.5 22 83-104 38-59 (266)
315 1nij_A Hypothetical protein YJ 93.2 0.049 1.7E-06 52.8 3.5 25 81-105 3-27 (318)
316 2f1r_A Molybdopterin-guanine d 93.2 0.025 8.4E-07 49.7 1.2 22 83-104 3-24 (171)
317 1sgw_A Putative ABC transporte 93.2 0.037 1.3E-06 50.5 2.4 20 84-103 37-56 (214)
318 3gfo_A Cobalt import ATP-bindi 93.2 0.036 1.2E-06 52.7 2.4 21 84-104 36-56 (275)
319 1b0u_A Histidine permease; ABC 93.2 0.036 1.2E-06 52.2 2.4 21 83-103 33-53 (262)
320 3lnc_A Guanylate kinase, GMP k 93.2 0.031 1.1E-06 51.3 2.0 22 82-103 27-48 (231)
321 2yvu_A Probable adenylyl-sulfa 93.2 0.056 1.9E-06 47.6 3.6 26 80-105 11-36 (186)
322 1g6h_A High-affinity branched- 93.2 0.038 1.3E-06 51.9 2.6 21 84-104 35-55 (257)
323 3uie_A Adenylyl-sulfate kinase 93.1 0.05 1.7E-06 48.7 3.3 27 80-106 23-49 (200)
324 2d2e_A SUFC protein; ABC-ATPas 93.1 0.04 1.4E-06 51.5 2.7 21 84-104 31-51 (250)
325 2ff7_A Alpha-hemolysin translo 93.1 0.039 1.3E-06 51.5 2.6 21 84-104 37-57 (247)
326 3fb4_A Adenylate kinase; psych 93.1 0.05 1.7E-06 49.1 3.2 25 84-108 2-26 (216)
327 2c95_A Adenylate kinase 1; tra 93.1 0.054 1.9E-06 47.9 3.4 27 81-107 8-34 (196)
328 3aez_A Pantothenate kinase; tr 93.1 0.052 1.8E-06 52.5 3.5 27 80-106 88-114 (312)
329 1ji0_A ABC transporter; ATP bi 93.1 0.041 1.4E-06 51.1 2.6 21 84-104 34-54 (240)
330 1jjv_A Dephospho-COA kinase; P 93.1 0.044 1.5E-06 49.2 2.8 24 83-107 3-26 (206)
331 1ly1_A Polynucleotide kinase; 93.0 0.045 1.5E-06 47.6 2.7 22 83-104 3-24 (181)
332 1kht_A Adenylate kinase; phosp 93.0 0.05 1.7E-06 47.8 3.1 25 83-107 4-28 (192)
333 2if2_A Dephospho-COA kinase; a 93.0 0.044 1.5E-06 49.1 2.7 22 83-104 2-23 (204)
334 2ghi_A Transport protein; mult 93.0 0.042 1.4E-06 51.7 2.6 22 83-104 47-68 (260)
335 1aky_A Adenylate kinase; ATP:A 92.9 0.055 1.9E-06 49.1 3.3 28 81-108 3-30 (220)
336 2olj_A Amino acid ABC transpor 92.9 0.043 1.5E-06 51.7 2.6 21 83-103 51-71 (263)
337 1uf9_A TT1252 protein; P-loop, 92.9 0.053 1.8E-06 48.3 3.0 26 80-105 6-31 (203)
338 2plr_A DTMP kinase, probable t 92.9 0.063 2.1E-06 48.1 3.5 26 82-107 4-29 (213)
339 2zu0_C Probable ATP-dependent 92.9 0.046 1.6E-06 51.7 2.7 21 84-104 48-68 (267)
340 1qhx_A CPT, protein (chloramph 92.9 0.056 1.9E-06 47.1 3.1 25 83-107 4-28 (178)
341 3tqc_A Pantothenate kinase; bi 92.8 0.062 2.1E-06 52.2 3.6 27 80-106 90-116 (321)
342 3iij_A Coilin-interacting nucl 92.8 0.059 2E-06 47.2 3.2 26 82-107 11-36 (180)
343 4e22_A Cytidylate kinase; P-lo 92.8 0.055 1.9E-06 50.6 3.1 28 81-108 26-53 (252)
344 1vpl_A ABC transporter, ATP-bi 92.8 0.046 1.6E-06 51.3 2.6 21 84-104 43-63 (256)
345 2qi9_C Vitamin B12 import ATP- 92.8 0.046 1.6E-06 51.1 2.6 21 84-104 28-48 (249)
346 2qt1_A Nicotinamide riboside k 92.7 0.056 1.9E-06 48.5 3.0 24 82-105 21-44 (207)
347 2ehv_A Hypothetical protein PH 92.7 0.048 1.7E-06 50.2 2.6 21 83-103 31-51 (251)
348 2ixe_A Antigen peptide transpo 92.7 0.048 1.6E-06 51.7 2.6 22 83-104 46-67 (271)
349 1via_A Shikimate kinase; struc 92.7 0.061 2.1E-06 46.9 3.1 25 83-107 5-29 (175)
350 3dl0_A Adenylate kinase; phosp 92.7 0.056 1.9E-06 48.9 2.9 25 84-108 2-26 (216)
351 4a74_A DNA repair and recombin 92.7 0.054 1.9E-06 49.2 2.8 22 83-104 26-47 (231)
352 3bos_A Putative DNA replicatio 92.7 0.16 5.6E-06 46.0 6.1 24 81-104 51-74 (242)
353 2yz2_A Putative ABC transporte 92.6 0.05 1.7E-06 51.3 2.6 22 83-104 34-55 (266)
354 2ihy_A ABC transporter, ATP-bi 92.6 0.051 1.7E-06 51.7 2.6 21 84-104 49-69 (279)
355 2bwj_A Adenylate kinase 5; pho 92.6 0.061 2.1E-06 47.7 3.0 26 82-107 12-37 (199)
356 1odf_A YGR205W, hypothetical 3 92.6 0.066 2.3E-06 51.2 3.4 27 80-106 29-55 (290)
357 2nq2_C Hypothetical ABC transp 92.6 0.052 1.8E-06 50.9 2.6 20 84-103 33-52 (253)
358 3tlx_A Adenylate kinase 2; str 92.5 0.076 2.6E-06 49.3 3.6 28 81-108 28-55 (243)
359 3umf_A Adenylate kinase; rossm 92.5 0.086 3E-06 48.1 3.9 29 80-108 27-55 (217)
360 1y63_A LMAJ004144AAA protein; 92.4 0.073 2.5E-06 46.9 3.2 24 82-105 10-33 (184)
361 2vli_A Antibiotic resistance p 92.4 0.058 2E-06 47.2 2.5 26 82-107 5-30 (183)
362 2gza_A Type IV secretion syste 92.4 0.055 1.9E-06 53.5 2.7 22 83-104 176-197 (361)
363 2kjq_A DNAA-related protein; s 92.4 0.074 2.5E-06 45.4 3.1 23 82-104 36-58 (149)
364 3ec2_A DNA replication protein 92.4 0.071 2.4E-06 46.7 3.1 25 81-105 37-61 (180)
365 1sq5_A Pantothenate kinase; P- 92.4 0.08 2.7E-06 51.0 3.7 27 81-107 79-105 (308)
366 2wwf_A Thymidilate kinase, put 92.3 0.075 2.6E-06 47.6 3.3 25 82-106 10-34 (212)
367 1wcv_1 SOJ, segregation protei 92.3 0.33 1.1E-05 45.1 7.8 66 158-232 110-181 (257)
368 3zvl_A Bifunctional polynucleo 92.3 0.12 4.3E-06 52.0 5.2 25 80-104 256-280 (416)
369 2cdn_A Adenylate kinase; phosp 92.3 0.082 2.8E-06 47.2 3.5 28 80-107 18-45 (201)
370 1zd8_A GTP:AMP phosphotransfer 92.3 0.07 2.4E-06 48.7 3.0 26 82-107 7-32 (227)
371 1qf9_A UMP/CMP kinase, protein 92.3 0.095 3.2E-06 46.0 3.8 25 83-107 7-31 (194)
372 1zak_A Adenylate kinase; ATP:A 92.2 0.076 2.6E-06 48.3 3.2 26 83-108 6-31 (222)
373 1u0l_A Probable GTPase ENGC; p 92.2 0.059 2E-06 51.8 2.6 22 83-104 170-191 (301)
374 1uj2_A Uridine-cytidine kinase 92.2 0.076 2.6E-06 49.5 3.2 27 81-107 21-47 (252)
375 1nn5_A Similar to deoxythymidy 92.2 0.078 2.7E-06 47.6 3.2 25 82-106 9-33 (215)
376 1rz3_A Hypothetical protein rb 92.2 0.073 2.5E-06 47.7 3.0 25 81-105 21-45 (201)
377 3jvv_A Twitching mobility prot 92.1 0.071 2.4E-06 52.6 3.1 23 83-105 124-146 (356)
378 3kta_A Chromosome segregation 92.1 0.076 2.6E-06 46.5 3.0 24 84-107 28-51 (182)
379 2pjz_A Hypothetical protein ST 92.0 0.065 2.2E-06 50.5 2.6 22 83-104 31-52 (263)
380 2pt5_A Shikimate kinase, SK; a 92.0 0.087 3E-06 45.3 3.2 24 84-107 2-25 (168)
381 2pt7_A CAG-ALFA; ATPase, prote 92.0 0.053 1.8E-06 52.9 2.0 22 83-104 172-193 (330)
382 1e4v_A Adenylate kinase; trans 92.0 0.088 3E-06 47.6 3.3 24 84-107 2-25 (214)
383 2bbs_A Cystic fibrosis transme 92.0 0.069 2.3E-06 51.1 2.7 21 83-103 65-85 (290)
384 1zuh_A Shikimate kinase; alpha 92.0 0.088 3E-06 45.4 3.2 26 82-107 7-32 (168)
385 1gtv_A TMK, thymidylate kinase 91.9 0.042 1.4E-06 49.4 1.1 22 84-105 2-23 (214)
386 3tui_C Methionine import ATP-b 91.9 0.066 2.2E-06 52.9 2.5 21 84-104 56-76 (366)
387 2iyv_A Shikimate kinase, SK; t 91.9 0.084 2.9E-06 46.3 3.0 25 83-107 3-27 (184)
388 3nh6_A ATP-binding cassette SU 91.9 0.045 1.5E-06 52.8 1.2 22 83-104 81-102 (306)
389 2ewv_A Twitching motility prot 91.9 0.078 2.7E-06 52.6 3.0 23 82-104 136-158 (372)
390 2v54_A DTMP kinase, thymidylat 91.8 0.078 2.7E-06 47.2 2.7 25 82-106 4-28 (204)
391 3be4_A Adenylate kinase; malar 91.8 0.1 3.5E-06 47.3 3.5 26 82-107 5-30 (217)
392 1e6c_A Shikimate kinase; phosp 91.8 0.09 3.1E-06 45.4 3.0 25 83-107 3-27 (173)
393 3fvq_A Fe(3+) IONS import ATP- 91.7 0.073 2.5E-06 52.5 2.6 21 84-104 32-52 (359)
394 3r20_A Cytidylate kinase; stru 91.6 0.098 3.4E-06 48.3 3.2 28 81-108 8-35 (233)
395 2ze6_A Isopentenyl transferase 91.6 0.1 3.5E-06 48.7 3.4 25 83-107 2-26 (253)
396 2grj_A Dephospho-COA kinase; T 91.5 0.12 4E-06 46.3 3.5 28 80-107 10-37 (192)
397 3sr0_A Adenylate kinase; phosp 91.5 0.1 3.6E-06 47.1 3.2 25 84-108 2-26 (206)
398 3nwj_A ATSK2; P loop, shikimat 91.4 0.1 3.4E-06 48.8 3.1 27 82-108 48-74 (250)
399 3cio_A ETK, tyrosine-protein k 91.4 0.39 1.3E-05 45.9 7.4 65 160-232 214-278 (299)
400 1z47_A CYSA, putative ABC-tran 91.4 0.081 2.8E-06 52.1 2.5 21 84-104 43-63 (355)
401 1lw7_A Transcriptional regulat 91.3 0.078 2.7E-06 52.4 2.4 26 82-107 170-195 (365)
402 1gvn_B Zeta; postsegregational 91.3 0.12 4E-06 49.4 3.5 26 81-106 32-57 (287)
403 2p5t_B PEZT; postsegregational 91.3 0.091 3.1E-06 49.0 2.7 27 81-107 31-57 (253)
404 2yyz_A Sugar ABC transporter, 91.3 0.083 2.8E-06 52.1 2.5 22 83-104 30-51 (359)
405 3bfv_A CAPA1, CAPB2, membrane 91.3 0.29 9.9E-06 46.1 6.2 65 160-232 192-256 (271)
406 2pbr_A DTMP kinase, thymidylat 91.3 0.12 4E-06 45.5 3.3 23 84-106 2-24 (195)
407 2oap_1 GSPE-2, type II secreti 91.3 0.077 2.6E-06 55.0 2.3 21 83-103 261-281 (511)
408 2z0h_A DTMP kinase, thymidylat 91.2 0.11 3.8E-06 45.9 3.1 23 84-106 2-24 (197)
409 3ea0_A ATPase, para family; al 91.2 0.18 6.1E-06 46.3 4.6 65 159-232 118-184 (245)
410 1vht_A Dephospho-COA kinase; s 91.2 0.1 3.6E-06 47.1 2.9 22 83-104 5-26 (218)
411 2it1_A 362AA long hypothetical 91.1 0.088 3E-06 52.0 2.5 22 83-104 30-51 (362)
412 3rlf_A Maltose/maltodextrin im 91.1 0.089 3E-06 52.3 2.5 21 84-104 31-51 (381)
413 1ak2_A Adenylate kinase isoenz 91.1 0.12 4.2E-06 47.3 3.4 27 81-107 15-41 (233)
414 2vp4_A Deoxynucleoside kinase; 91.1 0.088 3E-06 48.3 2.3 26 80-105 18-43 (230)
415 1g29_1 MALK, maltose transport 91.1 0.091 3.1E-06 52.1 2.5 21 84-104 31-51 (372)
416 1p9r_A General secretion pathw 91.0 0.11 3.7E-06 52.4 3.1 24 82-105 167-190 (418)
417 2xb4_A Adenylate kinase; ATP-b 91.0 0.12 4.3E-06 47.0 3.3 24 84-107 2-25 (223)
418 1v43_A Sugar-binding transport 91.0 0.093 3.2E-06 52.0 2.5 22 83-104 38-59 (372)
419 2pez_A Bifunctional 3'-phospho 90.9 0.11 3.9E-06 45.3 2.8 24 82-105 5-28 (179)
420 1a7j_A Phosphoribulokinase; tr 90.7 0.11 3.7E-06 49.7 2.6 27 81-107 4-30 (290)
421 2f6r_A COA synthase, bifunctio 90.7 0.14 4.7E-06 48.7 3.3 27 80-107 73-99 (281)
422 3a4m_A L-seryl-tRNA(SEC) kinas 90.7 0.12 4E-06 48.5 2.8 24 82-105 4-27 (260)
423 2vhj_A Ntpase P4, P4; non- hyd 90.5 0.22 7.5E-06 48.2 4.5 21 84-104 125-145 (331)
424 1f2t_A RAD50 ABC-ATPase; DNA d 90.4 0.15 5.1E-06 43.4 3.0 23 84-106 25-47 (149)
425 3gd7_A Fusion complex of cysti 90.4 0.12 4E-06 51.7 2.6 22 83-104 48-69 (390)
426 2npi_A Protein CLP1; CLP1-PCF1 90.3 0.13 4.3E-06 52.6 2.8 23 82-104 138-160 (460)
427 2x8a_A Nuclear valosin-contain 90.3 0.14 4.7E-06 48.5 2.9 24 84-107 46-69 (274)
428 3d31_A Sulfate/molybdate ABC t 90.2 0.079 2.7E-06 52.0 1.2 22 83-104 27-48 (348)
429 2w0m_A SSO2452; RECA, SSPF, un 90.0 0.16 5.6E-06 45.9 3.1 22 83-104 24-45 (235)
430 1m7g_A Adenylylsulfate kinase; 90.0 0.17 5.9E-06 45.5 3.3 25 81-105 24-48 (211)
431 3q9l_A Septum site-determining 89.9 0.27 9.3E-06 45.4 4.6 65 159-232 113-185 (260)
432 3ake_A Cytidylate kinase; CMP 89.8 0.18 6.3E-06 44.8 3.2 24 84-107 4-27 (208)
433 1q3t_A Cytidylate kinase; nucl 89.7 0.19 6.6E-06 46.1 3.4 27 81-107 15-41 (236)
434 4eaq_A DTMP kinase, thymidylat 89.6 0.22 7.5E-06 45.7 3.7 27 81-107 25-51 (229)
435 2oze_A ORF delta'; para, walke 89.5 0.71 2.4E-05 43.7 7.4 65 159-232 154-224 (298)
436 1ihu_A Arsenical pump-driving 89.4 0.82 2.8E-05 48.1 8.4 179 76-280 2-288 (589)
437 1oxx_K GLCV, glucose, ABC tran 89.4 0.08 2.7E-06 52.2 0.5 22 83-104 32-53 (353)
438 2obl_A ESCN; ATPase, hydrolase 89.3 0.19 6.6E-06 49.3 3.1 23 83-105 72-94 (347)
439 1ixz_A ATP-dependent metallopr 89.2 0.19 6.3E-06 46.6 2.9 23 84-106 51-73 (254)
440 1cr0_A DNA primase/helicase; R 89.2 0.19 6.4E-06 47.8 3.0 23 83-105 36-58 (296)
441 2xj4_A MIPZ; replication, cell 89.1 0.51 1.7E-05 44.6 5.9 35 159-195 103-137 (286)
442 3euj_A Chromosome partition pr 89.0 0.18 6.1E-06 51.7 2.7 24 83-106 30-53 (483)
443 1in4_A RUVB, holliday junction 88.8 0.22 7.5E-06 48.5 3.1 24 83-106 52-75 (334)
444 3hr8_A Protein RECA; alpha and 88.5 1.2 4.2E-05 43.6 8.3 21 83-103 62-82 (356)
445 2cvh_A DNA repair and recombin 88.5 0.22 7.4E-06 44.7 2.7 21 84-104 22-42 (220)
446 1jbk_A CLPB protein; beta barr 88.4 0.28 9.5E-06 42.4 3.3 24 81-104 42-65 (195)
447 3qf7_A RAD50; ABC-ATPase, ATPa 88.3 0.23 7.9E-06 49.0 3.0 22 84-105 25-46 (365)
448 2b8t_A Thymidine kinase; deoxy 88.2 0.85 2.9E-05 41.6 6.5 21 83-103 13-33 (223)
449 1iy2_A ATP-dependent metallopr 88.2 0.24 8.2E-06 46.7 2.9 23 84-106 75-97 (278)
450 1svm_A Large T antigen; AAA+ f 88.1 0.27 9.4E-06 48.7 3.3 26 81-106 168-193 (377)
451 1yqt_A RNAse L inhibitor; ATP- 88.1 0.21 7.3E-06 52.0 2.7 22 83-104 48-69 (538)
452 1n0w_A DNA repair protein RAD5 88.1 0.25 8.6E-06 45.1 2.9 22 83-104 25-46 (243)
453 3gmt_A Adenylate kinase; ssgci 88.0 0.3 1E-05 44.9 3.3 27 81-107 7-33 (230)
454 3b5x_A Lipid A export ATP-bind 87.9 0.21 7.2E-06 52.6 2.5 22 83-104 370-391 (582)
455 2dpy_A FLII, flagellum-specifi 87.8 0.27 9.2E-06 49.9 3.1 23 83-105 158-180 (438)
456 3b60_A Lipid A export ATP-bind 87.8 0.23 7.7E-06 52.4 2.7 22 83-104 370-391 (582)
457 3qks_A DNA double-strand break 87.7 0.27 9.4E-06 44.1 2.8 26 83-108 24-49 (203)
458 2yl4_A ATP-binding cassette SU 87.7 0.23 7.8E-06 52.5 2.6 22 83-104 371-392 (595)
459 1lv7_A FTSH; alpha/beta domain 87.6 0.33 1.1E-05 45.0 3.4 24 82-105 45-68 (257)
460 3ozx_A RNAse L inhibitor; ATP 87.6 0.22 7.6E-06 51.9 2.4 22 83-104 26-47 (538)
461 3qf4_B Uncharacterized ABC tra 87.3 0.25 8.5E-06 52.3 2.7 22 83-104 382-403 (598)
462 1ltq_A Polynucleotide kinase; 87.2 0.28 9.5E-06 46.7 2.7 22 83-104 3-24 (301)
463 1sxj_A Activator 1 95 kDa subu 87.2 2.3 7.9E-05 43.8 9.9 25 82-106 77-101 (516)
464 3j16_B RLI1P; ribosome recycli 87.1 0.25 8.5E-06 52.3 2.5 21 84-104 105-125 (608)
465 1zcb_A G alpha I/13; GTP-bindi 87.0 0.29 1E-05 48.2 2.9 24 80-103 31-54 (362)
466 3d3q_A TRNA delta(2)-isopenten 87.0 0.34 1.2E-05 47.2 3.2 25 83-107 8-32 (340)
467 2h92_A Cytidylate kinase; ross 86.9 0.32 1.1E-05 43.7 2.9 25 83-107 4-28 (219)
468 2w58_A DNAI, primosome compone 86.9 0.36 1.2E-05 42.8 3.2 22 83-104 55-76 (202)
469 3crm_A TRNA delta(2)-isopenten 86.8 0.36 1.2E-05 46.8 3.2 25 83-107 6-30 (323)
470 1p5z_B DCK, deoxycytidine kina 86.6 0.21 7E-06 46.7 1.4 27 80-106 22-48 (263)
471 1nlf_A Regulatory protein REPA 86.6 0.32 1.1E-05 45.8 2.8 22 83-104 31-52 (279)
472 1yqt_A RNAse L inhibitor; ATP- 86.4 0.3 1E-05 50.9 2.7 21 84-104 314-334 (538)
473 2p65_A Hypothetical protein PF 86.3 0.33 1.1E-05 41.8 2.5 24 81-104 42-65 (187)
474 3bk7_A ABC transporter ATP-bin 86.3 0.3 1E-05 51.7 2.6 22 83-104 118-139 (607)
475 3ozx_A RNAse L inhibitor; ATP 86.0 0.32 1.1E-05 50.7 2.6 21 84-104 296-316 (538)
476 3fgn_A Dethiobiotin synthetase 86.0 4.3 0.00015 37.5 10.2 66 159-231 126-197 (251)
477 2ocp_A DGK, deoxyguanosine kin 86.0 0.38 1.3E-05 44.2 2.9 24 83-106 3-26 (241)
478 4a82_A Cystic fibrosis transme 85.9 0.21 7.3E-06 52.6 1.2 22 83-104 368-389 (578)
479 3bk7_A ABC transporter ATP-bin 85.9 0.33 1.1E-05 51.3 2.7 21 84-104 384-404 (607)
480 1e69_A Chromosome segregation 85.8 0.36 1.2E-05 46.7 2.7 24 84-107 26-49 (322)
481 3exa_A TRNA delta(2)-isopenten 85.7 0.42 1.4E-05 46.0 3.1 25 83-107 4-28 (322)
482 1qhl_A Protein (cell division 85.6 0.077 2.6E-06 48.8 -2.1 24 84-107 29-52 (227)
483 2ga8_A Hypothetical 39.9 kDa p 85.6 0.49 1.7E-05 46.4 3.5 27 81-107 23-49 (359)
484 2qmh_A HPR kinase/phosphorylas 85.5 0.42 1.4E-05 42.8 2.8 22 83-104 35-56 (205)
485 3qf4_A ABC transporter, ATP-bi 85.3 0.26 8.9E-06 52.0 1.5 22 83-104 370-391 (587)
486 3tqf_A HPR(Ser) kinase; transf 85.3 0.46 1.6E-05 41.6 2.8 22 83-104 17-38 (181)
487 2zr9_A Protein RECA, recombina 85.2 2.1 7.1E-05 41.8 7.9 21 83-103 62-82 (349)
488 3j16_B RLI1P; ribosome recycli 84.9 0.39 1.3E-05 50.8 2.6 21 84-104 380-400 (608)
489 3a8t_A Adenylate isopentenyltr 84.7 0.45 1.5E-05 46.3 2.8 25 83-107 41-65 (339)
490 2dr3_A UPF0273 protein PH0284; 84.5 0.54 1.8E-05 42.8 3.1 21 84-104 25-45 (247)
491 3cr8_A Sulfate adenylyltranfer 84.4 0.33 1.1E-05 50.7 1.8 26 81-106 368-393 (552)
492 3foz_A TRNA delta(2)-isopenten 84.2 0.6 2.1E-05 44.8 3.4 25 83-107 11-35 (316)
493 3e2i_A Thymidine kinase; Zn-bi 84.0 4 0.00014 36.9 8.5 20 83-102 29-49 (219)
494 4he6_A Peptidase family U32; u 84.0 0.78 2.7E-05 35.2 3.4 55 332-390 26-85 (89)
495 1pzn_A RAD51, DNA repair and r 84.0 0.52 1.8E-05 46.1 3.0 23 83-105 132-154 (349)
496 3qkt_A DNA double-strand break 84.0 0.49 1.7E-05 46.1 2.7 22 84-105 25-46 (339)
497 4f4c_A Multidrug resistance pr 84.0 0.4 1.4E-05 55.5 2.4 22 83-104 1106-1127(1321)
498 4aby_A DNA repair protein RECN 83.9 0.22 7.4E-06 49.9 0.1 24 84-107 62-85 (415)
499 1u94_A RECA protein, recombina 83.7 2.9 0.0001 40.9 8.2 21 83-103 64-84 (356)
500 4ag6_A VIRB4 ATPase, type IV s 83.6 0.55 1.9E-05 46.6 3.0 25 81-105 34-58 (392)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=7.2e-73 Score=585.04 Aligned_cols=389 Identities=58% Similarity=0.970 Sum_probs=371.9
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.+.+++|+++||+|+|||||+++|++.++.+..+.+.++++++...|+.++.++|++|..+.|+++|+|++.....+.+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|+|||||++|..++..+++.+|++||||||.+|.++++|+..+|+++|+.++..+++|++|+|+||||++.++|+
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999888899
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEE
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~ 318 (475)
+++++++.+++..+++.+|+.+..+++++|+||++|.|+.++.+. ++||+|++|+++|+.++.|.+..+.|++++|.+
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~--~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~ 251 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDF--CPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVD 251 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccccc--ccccCchHHHHHHHhCCCCccCCCCCeEEEEEE
Confidence 999999999999999999987544689999999999999998764 899999999999999998888889999999999
Q ss_pred EEccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCCCCcc
Q 011910 319 KFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVA 398 (475)
Q Consensus 319 ~~~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~ 398 (475)
+|++.|++++|+|.+|+|++||.|.++|++..++|++|++++.++++|.|||+|+++|+|++..++++||||++++++|+
T Consensus 252 ~~~~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~~ 331 (439)
T 3j2k_7 252 KYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNLCH 331 (439)
T ss_pred EEcCCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred cccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 399 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 399 ~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
.++.|+|++.| |+| ++|..||++++|||+.+++|+|.+|.+++|++||++.+.+|++|+.|+.++|+|.+.
T Consensus 332 ~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~ 403 (439)
T 3j2k_7 332 SGRTFDVQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTA 403 (439)
T ss_pred eeeEEEEEEEE---eCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeC
Confidence 99999999999 667 569999999999999999999999999999999998888999999999999999875
No 2
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=2.4e-69 Score=562.92 Aligned_cols=389 Identities=53% Similarity=0.937 Sum_probs=326.9
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.+..++|+++||+|+|||||+++|++.++.++.+.+.++.++....|+.++.+++++|..+.|+++|+|++.....+.++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 46778999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|||||||.+|..++.++++.+|++|||||+.+|.++++|+...|+++|+.++..+++|++|||+||||+..++|+
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 99999999999999999999999999999999999999998899877899999999999999889999999999878888
Q ss_pred HHHHHHHHhhhhhHhhhh-cCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEE
Q 011910 239 KERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 317 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~-~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~ 317 (475)
+++++.+.+++..+++.. |+.+..+++++|+||++|.|+.++++...+|||.|++|+++|+.++.|.++.+.||+++|.
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~ 279 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIA 279 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEE
Confidence 899999999999999888 7742125789999999999999998766799999999999999999887777899999999
Q ss_pred EEEccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC-CccceeeCCCCEEEEEeccCCccCCCceeEEecCCCC
Q 011910 318 DKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (475)
Q Consensus 318 ~~~~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (475)
++|++.|++++|+|.+|+|++||.|.++|.+..++|++|+++ +.++++|.|||+|+++|+| +..++++||+|++++.+
T Consensus 280 ~~~~~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~~~ 358 (467)
T 1r5b_A 280 SKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKNP 358 (467)
T ss_dssp EEEESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSSSC
T ss_pred EEEeCCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCCCC
Confidence 999999999999999999999999999999999999999998 9999999999999999999 88899999999999989
Q ss_pred cccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 397 VAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 397 ~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
+..++.|+|++.| +.+ ++|..||++++|+|+.+++|+|..|.+++|. +|++.+.+|++|++|+.+.|+|.|.
T Consensus 359 ~~~~~~f~a~v~~---l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~ 431 (467)
T 1r5b_A 359 VHATTRFIAQIAI---LELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQ 431 (467)
T ss_dssp CCEEEEEEEEEEE---CSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEE
T ss_pred CccceEEEEEEEE---eCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEEC
Confidence 9999999999999 655 6799999999999999999999999999998 8988778899999999999999886
No 3
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-66 Score=551.17 Aligned_cols=386 Identities=33% Similarity=0.583 Sum_probs=358.3
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++.++|+++||+|+|||||+++|++.++.+..+.+.++.+.+...|+.++.++|++|....|+.+|+|++.....+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|||||||.+|..++..+++.+|++||||||..|.++++|....|+++|+.++..++++++|||+||||+ .+|+
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl--~~~~ 321 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWS 321 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT--TTTC
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc--cchh
Confidence 99999999999999999999999999999999999999988888878999999999999999989999999999 6678
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccC-CCCCCChhhHHHHhhhc--CC----CCCCCCCC
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS-LCPWWNGPCLFEALDRI--EI----TPRDPNGP 311 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~-~~~w~~g~~l~~~l~~l--~~----~~~~~~~~ 311 (475)
+.+++++.+++..+++.+|+.. ..++++|+||++|.|+.++.... .++||.|++|.++|+.+ .. |.+..+.|
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~-~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p 400 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 400 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcccc-cCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccc
Confidence 8899999999999999988752 25799999999999999986533 38999999999999988 22 33557789
Q ss_pred ceEEEEEEEc-----cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC--------CccceeeCCCCEEEEEecc
Q 011910 312 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD--------DNRVRHAGPGENLRIRLSG 378 (475)
Q Consensus 312 ~~~~v~~~~~-----~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~--------~~~v~~a~aG~~v~i~l~~ 378 (475)
++++|.++|+ +.|+|++|+|.+|+|++||.|.++|++..++|++|+++ +.++++|.|||+|+|+|++
T Consensus 401 ~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~ 480 (611)
T 3izq_1 401 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 480 (611)
T ss_dssp CEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESS
T ss_pred hhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeee
Confidence 9999999995 47899999999999999999999999999999999998 4899999999999999999
Q ss_pred CCccCCCceeEEecCCC-CcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCc
Q 011910 379 IEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKV 456 (475)
Q Consensus 379 ~~~~~i~~G~vl~~~~~-~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p 456 (475)
++..++++||||++++. |+..++.|+|+|.| +.+ .+|..||++++|||+.+++|+|..|.+++|.+||+. +.+|
T Consensus 481 ~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~---l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~ 556 (611)
T 3izq_1 481 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTT---FDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKI 556 (611)
T ss_dssp CCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEE---CSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCS
T ss_pred ccHhhCcceEEccCCCCCCCceeeEEEEEEEE---ECCCCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCc
Confidence 98899999999999998 89999999999999 555 789999999999999999999999999999999987 6789
Q ss_pred eeeeCCCEEEEEEEe
Q 011910 457 LFVKNGAIVVCRIQV 471 (475)
Q Consensus 457 ~~l~~g~~~~~~~~l 471 (475)
++|++|+.++|+|.|
T Consensus 557 ~~l~~~d~a~v~~~~ 571 (611)
T 3izq_1 557 RHLGSKQRAFVEIEL 571 (611)
T ss_dssp CSSSSCCSEEEEEEE
T ss_pred cccCCCCEEEEEEEE
Confidence 999999999999999
No 4
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=6.7e-65 Score=528.20 Aligned_cols=385 Identities=38% Similarity=0.686 Sum_probs=359.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
+..++|+++||+|+|||||+++|++.++.++.+.+.++.+++.+.|+.++.+++++|....|+++|+|++.....+.+.+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
+.++|||||||.+|..++..+++.+|++||||||.+|.++++|+...|+++|+.++..+++|++|||+||||+ .+|++
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl--~~~~~ 162 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS--VKWDE 162 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG--GTTCH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc--ccCCH
Confidence 9999999999999999999999999999999999999888888777799999999999999889999999999 56778
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCC------------hhhHHHHhhhcCCCCCC
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN------------GPCLFEALDRIEITPRD 307 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~------------g~~l~~~l~~l~~~~~~ 307 (475)
++++.+.+++..+++.+++.+ .+++++|+||++|.|+.++... ++||. |++|++.|+.+++|.+.
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~-~~~~~i~vSA~~g~nv~~~~~~--~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~ 239 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNP-KTVPFVPISGWNGDNMIEATTN--APWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRP 239 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCG-GGCCEEECCTTTCBTTTBCCSS--CTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCc-cCceEEEeecccCcCccccccc--CchhhcccccccccccchHHHHHHhhccCCCccc
Confidence 889999999999999988752 2478999999999999987654 89997 67899999999888888
Q ss_pred CCCCceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCC
Q 011910 308 PNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 385 (475)
Q Consensus 308 ~~~~~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~ 385 (475)
.+.|++++|.++|+ +.|++++|+|.+|.|++||+|.+.|.+..++|++|+.++.++.+|.||++|++.|+|++..+++
T Consensus 240 ~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~ 319 (458)
T 1f60_A 240 TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIR 319 (458)
T ss_dssp TTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSC
T ss_pred CCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccC
Confidence 89999999999995 8899999999999999999999999999999999999999999999999999999999889999
Q ss_pred ceeEEecCCC-CcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCC
Q 011910 386 SGFVLSSVAK-PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGA 463 (475)
Q Consensus 386 ~G~vl~~~~~-~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~ 463 (475)
+|++|++++. |+..++.|+|++.| +++ .+|..||++++|+|+.+++|+|..|.+++|.+||+..+.+|++|++|+
T Consensus 320 rG~vl~~~~~~~~~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~ 396 (458)
T 1f60_A 320 RGNVCGDAKNDPPKGCASFNATVIV---LNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGD 396 (458)
T ss_dssp TTCEEEETTSSCCCCCSEEEEEEEE---CSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTC
T ss_pred ceeEEecCCCCCCceeeEEEEEEEE---eCCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCC
Confidence 9999999985 88899999999999 655 789999999999999999999999999999999998888999999999
Q ss_pred EEEEEEEec
Q 011910 464 IVVCRIQVC 472 (475)
Q Consensus 464 ~~~~~~~l~ 472 (475)
.++|+|.|.
T Consensus 397 ~~~v~~~~~ 405 (458)
T 1f60_A 397 AALVKFVPS 405 (458)
T ss_dssp EEEEEEEES
T ss_pred EEEEEEEEC
Confidence 999999986
No 5
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-66 Score=548.85 Aligned_cols=381 Identities=33% Similarity=0.606 Sum_probs=292.9
Q ss_pred cCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 77 ~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
...+.+++|+++||+|+|||||+++|++.++.+..+.+.++.+.+...|+.++.++|++|....|+.+|+|++.....+.
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 34678899999999999999999999999999999988888888889999999999999999999999999999999999
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
+.++.++|||||||.+|..++..+++.+|++|||||+..|.++.+|....|+++|+.++..+++|++|||+||||+ .+
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl--~~ 329 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL--MS 329 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG--GT
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc--cc
Confidence 9999999999999999999999999999999999999999988888555899999999999999889999999999 66
Q ss_pred chHHHHHHHHhhhhhHh-hhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEE
Q 011910 237 WSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 315 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l-~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~ 315 (475)
|++++++.+.+++..++ +.+|+.. ..++++|+||++|.|+.++.....++||.|++|++.|..+.+|.+..+.||+++
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~-~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~ 408 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKT-SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLS 408 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCG-GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCc-cceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccccccccchhe
Confidence 78889999999999999 8888752 367999999999999998766556899999999999998877778888999999
Q ss_pred EEEEEc-cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccce-eeCCCCEEEEEeccCCccCCCceeEEecC
Q 011910 316 IIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVR-HAGPGENLRIRLSGIEEEDILSGFVLSSV 393 (475)
Q Consensus 316 v~~~~~-~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~-~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 393 (475)
|.++|+ +.|++++|+|.+|+|++||.|.++|++..++|++|++++.+++ .|.||++|+|+|+|++..++++||||+++
T Consensus 409 v~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~ 488 (592)
T 3mca_A 409 IDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNY 488 (592)
T ss_dssp EEEEEEETTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECS
T ss_pred eeEEEecCCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccC
Confidence 999986 6789999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEE-e
Q 011910 394 AKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ-V 471 (475)
Q Consensus 394 ~~~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~-l 471 (475)
+.|+..+..|+|++.| +.+ .+|..||++++|+|+.+++|+| .|... .+..|++|++|+.+.|+|. |
T Consensus 489 ~~~~~~~~~f~a~v~~---~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~~--------~~~~~~~l~~gd~~~v~l~fl 556 (592)
T 3mca_A 489 ENPVRRVRSFVAEIQT---FDIHGPILSGSTLVLHLGRTVTSVSL-KIVTV--------NNKRSRHIASRKRALVRISFL 556 (592)
T ss_dssp SSCCEEESEEEEEEEE---CSCSSCEETTEEEEEECSSCEEEEEE-EEEES--------SSSCCSEECSSCEEEEEEEES
T ss_pred CCCccccCeEEEEEEE---ECCCccCCCCCEEEEEEcCcEEEEEE-EEEec--------cccchhccCCCCEEEEEEEEC
Confidence 9988999999999999 555 7899999999999999999999 88651 2457889999999999999 5
Q ss_pred c
Q 011910 472 C 472 (475)
Q Consensus 472 ~ 472 (475)
.
T Consensus 557 ~ 557 (592)
T 3mca_A 557 D 557 (592)
T ss_dssp S
T ss_pred C
Confidence 4
No 6
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=7e-65 Score=532.26 Aligned_cols=386 Identities=33% Similarity=0.577 Sum_probs=328.5
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.+..++|+++|++|+|||||+++|++.++.+..+.+.++.+.+...|+.++.++|++|....|+.+|+|++.....+.+.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 46778999999999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|+|||||.+|..++..+++.+|++|||||+..|.++++++...|+++|+.++..++++++|||+||||+ .+|+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl--~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc--ccch
Confidence 99999999999999999999999999999999999999988888777899999999999998889999999999 6678
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccC-CCCCCChhhHHHHhhhc----CC--CCCCCCCC
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS-LCPWWNGPCLFEALDRI----EI--TPRDPNGP 311 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~-~~~w~~g~~l~~~l~~l----~~--~~~~~~~~ 311 (475)
+.+++++.+++..+++.+++.. ..++++|+||++|.|+.++.... .++||.|++|+++|+.+ +. |.+..+.|
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p 266 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 266 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCc
Confidence 8899999999999999988752 35799999999999999875432 27899999999998887 22 45677899
Q ss_pred ceEEEEEEEc-----cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECC--------ccceeeCCCCEEEEEecc
Q 011910 312 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD--------NRVRHAGPGENLRIRLSG 378 (475)
Q Consensus 312 ~~~~v~~~~~-----~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~--------~~v~~a~aG~~v~i~l~~ 378 (475)
++++|.++|+ +.|++++|+|.+|+|++||.|.++|++..++|++|+++. .++++|.|||+|+|+|++
T Consensus 267 ~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~ 346 (483)
T 3p26_A 267 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 346 (483)
T ss_dssp CEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEES
T ss_pred eEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEe
Confidence 9999999995 478999999999999999999999999999999999984 899999999999999999
Q ss_pred CCccCCCceeEEecCCC-CcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCc
Q 011910 379 IEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKV 456 (475)
Q Consensus 379 ~~~~~i~~G~vl~~~~~-~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p 456 (475)
++..++++||||+++++ |+..++.|+|++.| +.+ .+|..||++++|+|+.+++|+|.+|.+++|.+||+. +..|
T Consensus 347 ~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~---l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~ 422 (483)
T 3p26_A 347 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTT---FDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKI 422 (483)
T ss_dssp CCGGGCCTTCEEECTTCCCCEECSEEEEEEEE---CSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCC
T ss_pred cccccCCceEEEEcCCCCCCceeeEEEEEEEE---ECCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCc
Confidence 98899999999999997 89999999999999 555 789999999999999999999999999999999887 6789
Q ss_pred eeeeCCCEEEEEEEe
Q 011910 457 LFVKNGAIVVCRIQV 471 (475)
Q Consensus 457 ~~l~~g~~~~~~~~l 471 (475)
++|+.||.++|+|.|
T Consensus 423 ~~l~~~~~~~v~~~~ 437 (483)
T 3p26_A 423 RHLGSKQRAFVEIEL 437 (483)
T ss_dssp SCBCSSCEEEEEEEE
T ss_pred cCcCCCCEEEEEEEE
Confidence 999999999999998
No 7
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=2.1e-64 Score=521.90 Aligned_cols=387 Identities=38% Similarity=0.696 Sum_probs=349.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
++.++|+++||+|+|||||+++|++.++.++.+.+.++..++.+.|+.++.+++++|....|+++|+|++.....+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 56789999999999999999999999999999988888888888999999999999999999999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
+.++|||||||.+|..++..+++.+|++|||||+.+|.+++.+....|+++|+.++..++++++|+|+||||+...+|++
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 99999999999999999999999999999999999997776665668999999999999997799999999996666888
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEE
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK 319 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~ 319 (475)
++++.+.+++..+++..++.+ ..++++|+||++|.|+.++... ++||.|++|++.|+.+++|.+..+.|++++|.++
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~-~~~~~i~iSA~~g~~v~e~~~~--~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v 240 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNT-NKVRFVPVVAPSGDNITHKSEN--MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDV 240 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-TTCEEEECBTTTTBTTTBCCSS--CTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCc-CCceEEEeecccCccccccccc--cccccchhHHHHHhccCCCCCCCCCCeEEEEEEE
Confidence 899999999999999988752 2579999999999999998764 7999999999999998888777789999999999
Q ss_pred Ec--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCCCCc
Q 011910 320 FK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPV 397 (475)
Q Consensus 320 ~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~ 397 (475)
|+ +.|++++|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.||++|+++|+|++..++++||+|++++.++
T Consensus 241 ~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~~ 320 (435)
T 1jny_A 241 YSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPP 320 (435)
T ss_dssp EEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSCC
T ss_pred EEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCCc
Confidence 95 7899999999999999999999999999999999999999999999999999999999889999999999998889
Q ss_pred ccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 398 AAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 398 ~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
..+..|.|++.| +.+ .+|..||++++|+|+.+++|+|..|.+++|.+||+..+.+|.+|++|+.+.|+|.|.
T Consensus 321 ~~~~~f~a~v~~---l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~ 393 (435)
T 1jny_A 321 TVADEFTARIIV---VWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPI 393 (435)
T ss_dssp CEESEEEEEEEE---CCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEES
T ss_pred eEeEEEEEEEEE---ECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEEC
Confidence 999999999999 655 789999999999999999999999999999999998888999999999999999986
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=9.2e-60 Score=487.28 Aligned_cols=375 Identities=26% Similarity=0.433 Sum_probs=320.1
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCc--cchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
.+..++|+++||+|+|||||+++|++..+.+..+.+.++.......|. .++.+++++|....|+++|+|++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 356689999999999999999999998887776654444443333343 456778899999999999999999999999
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
+.++.++|||||||.+|..++..+++.+|++|||||+.+|.+ .|+++|+.++..++++++|+|+||+|+ .+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-------~qt~~~l~~~~~~~~~~iIvviNK~Dl--~~ 171 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-------TQTRRHSYIASLLGIKHIVVAINKMDL--NG 171 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCEEEEEEECTTT--TT
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEEcCcC--Cc
Confidence 999999999999999999999999999999999999999975 599999999999999889999999999 55
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEE
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v 316 (475)
|++++++.+.+++..+++.+++. ...++++|+||++|.|+.+++.. ++||.|++|.++|+.++.|.+..+.|++++|
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~-~~~~~~i~vSA~~g~gi~~~~~~--~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v 248 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFK-PTTMAFVPMSALKGDNVVNKSER--SPWYAGQSLMEILETVEIASDRNYTDLRFPV 248 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCC-CSEEEEEECCTTTCTTTSSCCTT--CTTCCSCCTTHHHHHSCCTTCCCSSSCEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCC-ccCceEEEEeccCCCCccccccc--CccccCchHHHHHhcCCCcccCCCCCcEEEE
Confidence 66778888888999998888732 12579999999999999998764 8999999999999999988888889999999
Q ss_pred EEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 317 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 317 ~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
.++++ ..|+.+.|+|.+|+|++||.|.++|++..++|++|+.++.++++|.||++|++++++ ..++++||+|++++
T Consensus 249 ~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~ 326 (434)
T 1zun_B 249 QYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHAD 326 (434)
T ss_dssp CEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETT
T ss_pred EEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECCC
Confidence 99984 467889999999999999999999999999999999999999999999999999984 46799999999999
Q ss_pred CCcccccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 395 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 395 ~~~~~~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
.+|..++.|+|++.| ++..++..||++++|+|+.+++|+|..+.+++|.+|++. ..|++|++||.+.|+|.|+
T Consensus 327 ~~~~~~~~f~a~~~~---l~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~--~~~~~l~~~d~~~v~~~~~ 399 (434)
T 1zun_B 327 NVPQVSDAFDAMLVW---MAEEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEE--GPASSLQLNEIGRVKVSLD 399 (434)
T ss_dssp SCCCEEEEEEEEEEE---CCSSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCC--CCCSCBCTTCEEEEEEEEE
T ss_pred CCCCcccEEEEEEEE---eccccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccc--cCccEeCCCCEEEEEEEEC
Confidence 988999999999999 556789999999999999999999999999999998873 5789999999999999986
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=4.7e-54 Score=439.59 Aligned_cols=346 Identities=27% Similarity=0.412 Sum_probs=288.9
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+.++|+++||+|+|||||+++|+.... ..|+..+...+.+|....|+++|+|++.....+.+.++
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 66 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILA---------------EGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHH---------------HTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSC
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhh---------------hcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCe
Confidence 568999999999999999999965321 12333333344578888999999999999888988899
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHH
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~ 240 (475)
.++|+|||||.+|..++..+++.+|++|||||+.+|.+ .|+++|+.++..+++|++|+|+||||+.. +++
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~vp~iivviNK~Dl~~---~~~ 136 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-------PQTREHLLLARQIGVEHVVVYVNKADAVQ---DSE 136 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCCEEEEEECGGGCS---CHH
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCCeEEEEEECcccCC---CHH
Confidence 99999999999999999999999999999999999875 69999999999999998889999999942 345
Q ss_pred HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCCh--hhHHHHhhh-cCCCCCCCCCCceEEEE
Q 011910 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG--PCLFEALDR-IEITPRDPNGPFRMPII 317 (475)
Q Consensus 241 ~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g--~~l~~~l~~-l~~~~~~~~~~~~~~v~ 317 (475)
.++.+.+++..+++..++.. ..++++|+||++|.|.. .++||.| ..|++.|.. ++.|.+..+.||+++|.
T Consensus 137 ~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SA~~g~n~~------~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~ 209 (397)
T 1d2e_A 137 MVELVELEIRELLTEFGYKG-EETPIIVGSALCALEQR------DPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVE 209 (397)
T ss_dssp HHHHHHHHHHHHHHHTTSCT-TTSCEEECCHHHHHTTC------CTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCc-ccCcEEEeehhhccccc------CCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEE
Confidence 67778888888998888742 35799999999999842 2689976 566666654 78788888899999999
Q ss_pred EEE--ccCCeEEEEEEEEeeEecCCeEEecCCC--CeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecC
Q 011910 318 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 393 (475)
Q Consensus 318 ~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 393 (475)
++| ++.|++++|+|.+|+|++||.|.+.|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++||+|+++
T Consensus 210 ~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~ 289 (397)
T 1d2e_A 210 SVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKP 289 (397)
T ss_dssp EEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEEST
T ss_pred EEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCC
Confidence 998 5789999999999999999999998875 789999999999999999999999999999988999999999998
Q ss_pred CCCcccccEEEEEEEEeecc---ccccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEE
Q 011910 394 AKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ 470 (475)
Q Consensus 394 ~~~~~~~~~f~A~i~~~~~~---~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~ 470 (475)
+ ++.+++.|+|++.||+.. .+.++..||++++|+++.+++|+|. +.. .|++|++|+.+.|+|.
T Consensus 290 ~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~~------------~~~~l~~~~~~~v~~~ 355 (397)
T 1d2e_A 290 G-SIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LPP------------GKELAMPGEDLKLTLI 355 (397)
T ss_dssp T-SCCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CCS------------SCCCBCTTCEEEEEEE
T ss_pred C-CCCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-EcC------------CcccccCCCEEEEEEE
Confidence 8 467789999999995421 1258999999999999999999997 421 1344555555555555
Q ss_pred ec
Q 011910 471 VC 472 (475)
Q Consensus 471 l~ 472 (475)
|.
T Consensus 356 ~~ 357 (397)
T 1d2e_A 356 LR 357 (397)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=3.5e-53 Score=434.52 Aligned_cols=333 Identities=29% Similarity=0.464 Sum_probs=280.7
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCc-cchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR-ESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~-~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
.+..++|+++||+|+|||||+++|+.... ..|+ ..+...+.+|....|+.+|+|++.....+.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 72 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAA---------------AENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHH---------------HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhh---------------hcCccccccchhhccCCHHHHHcCCCEEeeeeEecc
Confidence 35668999999999999999999965321 1222 1222233688999999999999998888998
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.++|+|||||.+|..++..+++.+|++|||||+.+|.+ .|+++|+.++..+++|++|+|+||||+..
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~~~l~~~~~~~ip~iivviNK~Dl~~--- 142 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFMNKVDMVD--- 142 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-------HHHHHHHHHHHHTTCCCEEEEEECGGGCC---
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEECccccC---
Confidence 99999999999999999999999999999999999999875 59999999999999998889999999942
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc---cCCCCCCCh-hhHHHHhhh-cCCCCCCCCCCc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD---KSLCPWWNG-PCLFEALDR-IEITPRDPNGPF 312 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~---~~~~~w~~g-~~l~~~l~~-l~~~~~~~~~~~ 312 (475)
+++.++.+.+++..+++.+++.. ..++++++||++|.|+.+... ...++||.+ ..|++.|.. ++.|.+..+.||
T Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~ 221 (405)
T 2c78_A 143 DPELLDLVEMEVRDLLNQYEFPG-DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPF 221 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCT-TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcccc-cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCc
Confidence 34566777788888888887741 257999999999998644211 113678875 456666654 777888888999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC---CeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCce
Q 011910 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 387 (475)
Q Consensus 313 ~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~---~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (475)
+++|.++| ++.|++++|+|.+|+|++||.|.+.|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++|
T Consensus 222 ~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G 301 (405)
T 2c78_A 222 LMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 301 (405)
T ss_dssp EEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTT
T ss_pred EEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCce
Confidence 99999998 4789999999999999999999999987 589999999999999999999999999999988999999
Q ss_pred eEEecCCCCcccccEEEEEEEEeecc---ccccccCCcEEEEEEeeeeEEEEEE
Q 011910 388 FVLSSVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIV 438 (475)
Q Consensus 388 ~vl~~~~~~~~~~~~f~A~i~~~~~~---~~~~i~~g~~~~~~~~~~~~~~~i~ 438 (475)
|+|++++ ++.+++.|+|++.||+.. ++.+|..||++++|+++.+++|+|.
T Consensus 302 ~~l~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~ 354 (405)
T 2c78_A 302 QVLAKPG-SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ 354 (405)
T ss_dssp CEEESTT-SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE
T ss_pred EEEEcCC-CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE
Confidence 9999988 467889999999995421 1258999999999999999999997
No 11
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=7.2e-52 Score=432.35 Aligned_cols=339 Identities=24% Similarity=0.411 Sum_probs=274.8
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+.++|+++||+|+|||||+++|.... ....+|....|+++|+|++.....+.++
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~------------------------~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 71 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIA------------------------STSAHDKLPESQKRGITIDIGFSAFKLE 71 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEEEET
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCC------------------------cccccccccccccCccEEecceEEEEEC
Confidence 3567899999999999999999994221 0235677788999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|+|||||.+|..++..+++.+|++|||||+.+|.+ .|+++|+.++..+++| +|+|+||||+..
T Consensus 72 ~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~ip-~IvviNK~Dl~~---- 139 (482)
T 1wb1_A 72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-------TQTGEHMLILDHFNIP-IIVVITKSDNAG---- 139 (482)
T ss_dssp TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-BCEEEECTTSSC----
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-------HHHHHHHHHHHHcCCC-EEEEEECCCccc----
Confidence 9999999999999999999999999999999999999864 6999999999999999 589999999942
Q ss_pred HHHHHHHHhhhhhHhhhh-cCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEE
Q 011910 239 KERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 317 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~-~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~ 317 (475)
++.++.+.+++..+++.. ++. .++++|+||++|.|+.+|++. |.+.+. ++...++.+.|+++++.
T Consensus 140 ~~~~~~~~~~l~~~l~~~~~~~---~~~ii~vSA~~g~gI~~L~~~----------L~~~i~-~~~~~~~~~~~~~~~v~ 205 (482)
T 1wb1_A 140 TEEIKRTEMIMKSILQSTHNLK---NSSIIPISAKTGFGVDELKNL----------IITTLN-NAEIIRNTESYFKMPLD 205 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSSSGG---GCCEEECCTTTCTTHHHHHHH----------HHHHHH-HSCCCCCSSSCCBCBCS
T ss_pred chhHHHHHHHHHHHHhhhcccc---cceEEEEECcCCCCHHHHHHH----------HHHhhc-Cccccccccccccccce
Confidence 456777888888888876 654 578999999999999985332 322222 23226667789999999
Q ss_pred EEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEE-ecCC
Q 011910 318 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL-SSVA 394 (475)
Q Consensus 318 ~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl-~~~~ 394 (475)
++| ++.|+|++|+|.+|.|++||.|.+.|.+...+|++|+.++.++++|.|||+|+++++|++..++++||+| +.+
T Consensus 206 ~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~- 284 (482)
T 1wb1_A 206 HAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKD- 284 (482)
T ss_dssp CEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTT-
T ss_pred eEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCC-
Confidence 998 5789999999999999999999999999999999999999999999999999999999988899999999 555
Q ss_pred CCcccccEEEEEEEEeeccccccccCCcEEEEEEeeeeEEEEEEEee-eeccccCCcccccCceeeeCCCEEEEEEEec
Q 011910 395 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELL-HQIDLKTKKPMKKKVLFVKNGAIVVCRIQVC 472 (475)
Q Consensus 395 ~~~~~~~~f~A~i~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~-~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l~ 472 (475)
.++++++.|+|++.|++. ...++..||++++|+|+.+++|+|..+. .++|.+++.. .+++|++|+.+.|+|.|+
T Consensus 285 ~~~~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~---~~~~l~~g~~~~v~l~~~ 359 (482)
T 1wb1_A 285 TKLQTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENI---ILNEVISGNEXYXAFELE 359 (482)
T ss_dssp CCCCCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEE---ECCSSCCSSCCCEEEEEE
T ss_pred CCCceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccc---cchhhcCCCEEEEEEEcC
Confidence 467788999999999431 1268999999999999999999999998 8888877643 257899999999999886
No 12
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=2.7e-49 Score=406.32 Aligned_cols=334 Identities=24% Similarity=0.361 Sum_probs=271.0
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++.++|+++||+|||||||+++|.. . ..+....|+++|+|++..+..+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g---~-------------------------~~~~~~~e~~~giTi~~~~~~~~~~ 58 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTG---V-------------------------WTDTHSEELRRGITIKIGFADAEIR 58 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHT---C-------------------------CCC--CGGGGSCSSSCCEEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhC---C-------------------------ccccChhhhcCCcEEEEeeeeeecc
Confidence 46778999999999999999999841 1 2345567888999998876554431
Q ss_pred -----------------------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHH
Q 011910 159 -----------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 215 (475)
Q Consensus 159 -----------------------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~ 215 (475)
.+.++|||||||.+|..++.+++..+|++||||||.+|.. ..|+++|+.++
T Consensus 59 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~~ 132 (410)
T 1kk1_A 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCP------RPQTREHLMAL 132 (410)
T ss_dssp ECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSS------CHHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCC------ChhHHHHHHHH
Confidence 2789999999999999999999999999999999999851 26999999999
Q ss_pred HHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHH
Q 011910 216 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 295 (475)
Q Consensus 216 ~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~ 295 (475)
..++++++|+|+||||+...++ .....+++..+++.... ..++++++||++|.|+.+ |+
T Consensus 133 ~~~~~~~iivviNK~Dl~~~~~----~~~~~~~i~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L~ 191 (410)
T 1kk1_A 133 QIIGQKNIIIAQNKIELVDKEK----ALENYRQIKEFIEGTVA---ENAPIIPISALHGANIDV--------------LV 191 (410)
T ss_dssp HHHTCCCEEEEEECGGGSCHHH----HHHHHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHH--------------HH
T ss_pred HHcCCCcEEEEEECccCCCHHH----HHHHHHHHHHHHHhcCc---CCCeEEEeeCCCCCCHHH--------------HH
Confidence 9999877999999999954322 22334445555554322 257999999999999987 44
Q ss_pred HHhh-hcCCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEEEeeEecCCeEEecCCCC------------eEE
Q 011910 296 EALD-RIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA------------QVK 352 (475)
Q Consensus 296 ~~l~-~l~~~~~~~~~~~~~~v~~~~~----------~~G~v~~g~v~~G~l~~gd~v~i~p~~~------------~~~ 352 (475)
+.|. .++.|.++.+.|++++|.++|. ..|++++|+|.+|+|++||+|.++|++. ..+
T Consensus 192 ~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~ 271 (410)
T 1kk1_A 192 KAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTE 271 (410)
T ss_dssp HHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeE
Confidence 4444 4787777788999999999883 2688999999999999999999998642 689
Q ss_pred EEEEEECCccceeeCCCCEEEEEec---cCCccCCCceeEEecCCCCcccccEEEEEEEEeecc-------ccccccCCc
Q 011910 353 VLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGY 422 (475)
Q Consensus 353 V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~-------~~~~i~~g~ 422 (475)
|++|+.++.++++|.|||+|+++++ ++...++++||||++++.+|+.++.|+|++.||+.. ...+|+.||
T Consensus 272 v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~ 351 (410)
T 1kk1_A 272 IVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKE 351 (410)
T ss_dssp EEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTC
T ss_pred EEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCC
Confidence 9999999999999999999999986 566788999999999998888899999999995421 026899999
Q ss_pred EEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEEe
Q 011910 423 KAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV 471 (475)
Q Consensus 423 ~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~l 471 (475)
++++|+|+.+++|+|..+... .......+|.++.+|+++++|=..
T Consensus 352 ~~~~~~~t~~~~~~v~~~~~~----~~~l~~~~p~~~~~~~~~~~~~~~ 396 (410)
T 1kk1_A 352 VLLLNVGTARTMGLVTGLGKD----EIEVKLQIPVCAEPGDRVAISRQI 396 (410)
T ss_dssp EEEEEETTEEEEEEEEEEETT----EEEEEEEEEEECCTTCEEEEEEEE
T ss_pred EEEEEEcCCEEeEEEEEecCC----EEEEEeCCcEEecCCCEEEEEEec
Confidence 999999999999999998531 122234689999999999987643
No 13
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1.3e-49 Score=408.30 Aligned_cols=332 Identities=25% Similarity=0.366 Sum_probs=260.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee--
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 157 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-- 157 (475)
++.++|+++||+|||||||+++|.. . ..+....|+++|+|++..+..+..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g---~-------------------------~~~~~~~e~~~giTi~~~~~~~~~~~ 57 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTG---V-------------------------WTDRHSEELRRGISIRLGYADCEIRK 57 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHS---C-------------------------CCCC-------CCCCCCEEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhC---C-------------------------ccccCcccccCCcEEEeccccccccc
Confidence 5678999999999999999999831 1 234556788899999877554332
Q ss_pred -------------C--------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH
Q 011910 158 -------------E--------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK 216 (475)
Q Consensus 158 -------------~--------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~ 216 (475)
+ .+.++|||||||.+|..++.+++..+|++|||||+.+|.. ..|+++|+..+.
T Consensus 58 ~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~~~ 131 (408)
T 1s0u_A 58 CPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCP------QPQTKEHLMALE 131 (408)
T ss_dssp CTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSS------CHHHHHHHHHHH
T ss_pred ccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCC------CchhHHHHHHHH
Confidence 1 2789999999999999999999999999999999999851 269999999999
Q ss_pred HcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHH
Q 011910 217 TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE 296 (475)
Q Consensus 217 ~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~ 296 (475)
.++++++|+|+||+|+...++....++++ ..+++.... ..++++++||++|.|+.+| .+
T Consensus 132 ~l~~~~iivv~NK~Dl~~~~~~~~~~~~i----~~~l~~~~~---~~~~~i~vSA~~g~gi~~L--------------~~ 190 (408)
T 1s0u_A 132 ILGIDKIIIVQNKIDLVDEKQAEENYEQI----KEFVKGTIA---ENAPIIPISAHHEANIDVL--------------LK 190 (408)
T ss_dssp HTTCCCEEEEEECTTSSCTTTTTTHHHHH----HHHHTTSTT---TTCCEEEC------CHHHH--------------HH
T ss_pred HcCCCeEEEEEEccCCCCHHHHHHHHHHH----HHHHhhcCC---CCCeEEEeeCCCCCCHHHH--------------HH
Confidence 99987799999999996554433444444 344443322 2578999999999999874 44
Q ss_pred Hhh-hcCCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEEEeeEecCCeEEecCCC------------CeEEE
Q 011910 297 ALD-RIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNK------------AQVKV 353 (475)
Q Consensus 297 ~l~-~l~~~~~~~~~~~~~~v~~~~~----------~~G~v~~g~v~~G~l~~gd~v~i~p~~------------~~~~V 353 (475)
.|. .++.|.++.+.|++++|.++|+ .+|++++|+|.+|+|++||.|.++|+. ..++|
T Consensus 191 ~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v 270 (408)
T 1s0u_A 191 AIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKI 270 (408)
T ss_dssp HHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEEC
T ss_pred HHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEE
Confidence 444 4787788888999999999983 268899999999999999999999864 26899
Q ss_pred EEEEECCccceeeCCCCEEEEEec---cCCccCCCceeEEecCCCCcccccEEEEEEEEeecc-------ccccccCCcE
Q 011910 354 LAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGYK 423 (475)
Q Consensus 354 ~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~-------~~~~i~~g~~ 423 (475)
++|++++.++++|.||++|+++++ +++..++++||||++++.+|+.++.|+|++.||+.. .+.+|+.||+
T Consensus 271 ~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~ 350 (408)
T 1s0u_A 271 VSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEV 350 (408)
T ss_dssp CEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCE
T ss_pred EEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCE
Confidence 999999999999999999999987 677889999999999998888899999999995421 0268999999
Q ss_pred EEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEEEEEE
Q 011910 424 AVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ 470 (475)
Q Consensus 424 ~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~~~~~ 470 (475)
+++|+|+.+++|+|..+... .......+|.++..|+++++|=.
T Consensus 351 ~~~~~~t~~~~~~v~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~ 393 (408)
T 1s0u_A 351 LMLNIGTATTAGVITSARGD----IADIKLKLPICAEIGDRVAISRR 393 (408)
T ss_dssp EEEEETTEEEEEEEEEEETT----EEEEEEEEEEECCTTCEEEEEEE
T ss_pred EEEEEcCCEEEEEEEEecCC----EEEEEECCcEEecCCCEEEEEEe
Confidence 99999999999999998531 12223468999999999998854
No 14
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=1.5e-49 Score=437.41 Aligned_cols=355 Identities=28% Similarity=0.398 Sum_probs=273.6
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++.++|+++||+|+|||||+++|+.... ..|+..+...+.+|....|+.+|+|++.....+...
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~---------------~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~ 357 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 357 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHH---------------HHSCC---------------------CCSCEEEECS
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhc---------------cccccccccccccccccccccCceeEEEEEEEEcCC
Confidence 45678999999999999999999964321 112222222236788889999999999999899999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|||||||.+|..++..+++.+|++|||||+.+|.+ .|+++|+.++..+++|++|||+||||+.. +
T Consensus 358 ~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-------~QTrEhL~ll~~lgIP~IIVVINKiDLv~---d 427 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLGRQVGVPYIIVFLNKCDMVD---D 427 (1289)
T ss_dssp SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-------TTHHHHHHHHHHHTCSCEEEEEECCTTCC---C
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc---c
Confidence 9999999999999999999999999999999999999975 59999999999999998899999999943 3
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCCh-hhHHHHhhh-cCCCCCCCCCCceEEE
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMPI 316 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g-~~l~~~l~~-l~~~~~~~~~~~~~~v 316 (475)
+++++.+.+++..+++..++. ...++++|+||++|.+- ..+||.| ..|++.|.. ++.|.+..+.||+++|
T Consensus 428 ~e~le~i~eEi~elLk~~G~~-~~~vp~IpvSAktG~ng-------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pI 499 (1289)
T 3avx_A 428 EELLELVEMEVRELLSQYDFP-GDDTPIVRGSALKALEG-------DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPI 499 (1289)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC-TTTCCEEECCSTTTTTC-------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEEC
T ss_pred hhhHHHHHHHHHHHHHhcccc-ccceeEEEEEeccCCCC-------CccccccchhhHhHHhhhcCCCccccccceeeec
Confidence 456777888888899988874 23579999999999541 1357765 456665554 7777777889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCeEEecCCC--CeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 317 ~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
.++| ++.|+|++|+|.+|+|++||+|.+.|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++||+|++
T Consensus 500 d~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~ 579 (1289)
T 3avx_A 500 EDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAK 579 (1289)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEES
T ss_pred cccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEec
Confidence 9998 4789999999999999999999999987 68999999999999999999999999999999999999999999
Q ss_pred CCCCcccccEEEEEEEEeecc---ccccccCCcEEEEEEeeeeEEEEEEEeee-eccccCCcc-----cccCceeeeCCC
Q 011910 393 VAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLH-QIDLKTKKP-----MKKKVLFVKNGA 463 (475)
Q Consensus 393 ~~~~~~~~~~f~A~i~~~~~~---~~~~i~~g~~~~~~~~~~~~~~~i~~i~~-~~~~~~g~~-----~~~~p~~l~~g~ 463 (475)
++. +.+++.|+|++.|+... +++++..||++++|+++.+++|+|. +.. ...++.|+. ...+|.++.+|+
T Consensus 580 ~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~ 657 (1289)
T 3avx_A 580 PGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LPEGVEMVMPGDNIKMVVTLIHPIAMDDGL 657 (1289)
T ss_dssp TTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CCTTCCCBCTTCCCEEEEEEEEEEECCTTC
T ss_pred CCC-CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-ECCCcccccCCCEEEEEEEECceEEEccCC
Confidence 875 57789999999995421 1258999999999999999999997 421 001222321 123556666666
Q ss_pred EEEEE
Q 011910 464 IVVCR 468 (475)
Q Consensus 464 ~~~~~ 468 (475)
++++|
T Consensus 658 RFiLR 662 (1289)
T 3avx_A 658 RFAIR 662 (1289)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 15
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=4.6e-49 Score=397.62 Aligned_cols=288 Identities=19% Similarity=0.309 Sum_probs=247.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++||+|+|||||+++|+ ++|+|++.....+.+.++.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 99999999999999999982 489999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE-ccCCCCCCchHHHH
Q 011910 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 242 (475)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN-KiD~~~~~~~~~~~ 242 (475)
|||||||.+|..+++.+++.+|++||||| ..|.+ .|+++|+.++..+++|++|+|+| |||+ .. +.+
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~-------~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~----~~~ 130 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLD-------AHTGECIIALDLLGFKHGIIALTRSDST-HM----HAI 130 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCC-------HHHHHHHHHHHHTTCCEEEEEECCGGGS-CH----HHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCc-------HHHHHHHHHHHHcCCCeEEEEEEeccCC-CH----HHH
Confidence 99999999999999999999999999999 88865 69999999999999996589999 9998 43 344
Q ss_pred HHHHhhhhhHhhhhcCcccCCeeEEE--eeccc---ccccccccccCCCCCCChhhHHHHhhhcCCCCCC-CCCCceEEE
Q 011910 243 DEIESKMTPFLKASGYNVKKDVQFLP--ISGLM---GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRMPI 316 (475)
Q Consensus 243 ~~i~~~l~~~l~~~~~~~~~~~~iip--iSa~~---g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~-~~~~~~~~v 316 (475)
+.+.+++..+++..++. .++++| +||++ |.|+.++++. |.+.+.....+... ...|+++++
T Consensus 131 ~~~~~~i~~~l~~~~~~---~~~ii~~~~SA~~~~~g~gi~~L~~~----------l~~~~~~~~~~~~~~~~~p~r~~v 197 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQ---DWECISLNTNKSAKNPFEGVDELKAR----------INEVAEKIEAENAELNSLPARIFI 197 (370)
T ss_dssp HHHHHHHHHHTTTSTTT---TCEEEECCCCTTSSSTTTTHHHHHHH----------HHHHHHHHHHHHHHGGGSCCEEEE
T ss_pred HHHHHHHHHHHHhcCCC---ceEEEecccccccCcCCCCHHHHHHH----------HHhhccccccCCcccccccccccc
Confidence 55667777777766543 579999 99999 9999886432 44444332111111 345678899
Q ss_pred EEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCceeEEecCC
Q 011910 317 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (475)
Q Consensus 317 ~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (475)
.++|+ +.|++++|+|.+|+|++||+|.+.|.+..++|++|++++.++++|.|||+|+++|+|++..++++||+|++
T Consensus 198 ~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-- 275 (370)
T 2elf_A 198 DHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-- 275 (370)
T ss_dssp EEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES--
T ss_pred eeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC--
Confidence 99995 78999999999999999999999999999999999999999999999999999999998899999999998
Q ss_pred CCcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeee
Q 011910 395 KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLH 442 (475)
Q Consensus 395 ~~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~ 442 (475)
.+ +.++.|+|++.| +.+ .+|..||++++|+|+.+++|+|..|..
T Consensus 276 ~~-~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~ 320 (370)
T 2elf_A 276 KE-IVTTDYTLECTV---SKFTKKIEPASVLHLFVGLQSEPVRVEKILV 320 (370)
T ss_dssp CC-EEEEEEEEEEEE---CTTSCCBCTTCEEEEEETTEEEEEEEEEEEE
T ss_pred CC-ceeEEEEEEEEE---ECCCCCCCCCCEEEEEEcCCEEEEEEEEEEe
Confidence 45 888999999999 666 789999999999999999999999853
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.8e-47 Score=391.76 Aligned_cols=342 Identities=22% Similarity=0.274 Sum_probs=263.8
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEE---
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF--- 155 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~--- 155 (475)
.++..+|+++||+|+|||||+++|........ .| +...........+..++++.......+
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-------------LG---YAETNIGVCESCKKPEAYVTEPSCKSCGSD 68 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-------------SE---EEEEEEEECTTSCTTTTEESSSCCGGGTCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc-------------cC---ccccceeeccccccccceeccccccccccc
Confidence 35668999999999999999999954211100 00 000000011111223334333221111
Q ss_pred --eeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCC
Q 011910 156 --ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 156 --~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~ 233 (475)
....+.++|+|||||.+|..++..+++.+|++|||||+.++.. ..|+++|+.++..++++++|+|+||+|+.
T Consensus 69 ~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~------~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 69 DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp SCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC------cHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 1223789999999999999999999999999999999999862 26999999999999986699999999994
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhh-hcCCCCCCCCCCc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALD-RIEITPRDPNGPF 312 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~-~l~~~~~~~~~~~ 312 (475)
.. +......+++..+++..+.. .++++++||++|.|+.+| ++.|. .++.|.++.+.|+
T Consensus 143 ~~----~~~~~~~~~i~~~l~~~~~~---~~~ii~vSA~~g~gi~~L--------------~~~l~~~l~~~~~~~~~~~ 201 (403)
T 3sjy_A 143 SK----EEALSQYRQIKQFTKGTWAE---NVPIIPVSALHKINIDSL--------------IEGIEEYIKTPYRDLSQKP 201 (403)
T ss_dssp CH----HHHHHHHHHHHHHHTTSTTT---TCCEEECBTTTTBSHHHH--------------HHHHHHHSCCCCCCTTSCC
T ss_pred ch----HHHHHHHHHHHHHHHhhCCC---CCEEEEEECCCCcChHHH--------------HHHHHHhCCCCCCCCCCCc
Confidence 32 23344555566666655443 679999999999999874 44444 4777878888999
Q ss_pred eEEEEEEEc--c--------CCeEEEEEEEEeeEecCCeEEecCCCC------------eEEEEEEEECCccceeeCCCC
Q 011910 313 RMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNKA------------QVKVLAIYCDDNRVRHAGPGE 370 (475)
Q Consensus 313 ~~~v~~~~~--~--------~G~v~~g~v~~G~l~~gd~v~i~p~~~------------~~~V~si~~~~~~v~~a~aG~ 370 (475)
+++|.++|. + +|++++|+|.+|+|++||+|.++|++. ..+|++|++++.++++|.|||
T Consensus 202 ~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~ 281 (403)
T 3sjy_A 202 VMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGG 281 (403)
T ss_dssp EEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSS
T ss_pred EEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCC
Confidence 999999873 2 689999999999999999999999874 579999999999999999999
Q ss_pred EEEEEec---cCCccCCCceeEEecCCCCcccccEEEEEEEEeecc-------ccccccCCcEEEEEEeeeeEEEEEEEe
Q 011910 371 NLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGYKAVLHIHAVVEECEIVEL 440 (475)
Q Consensus 371 ~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~A~i~~~~~~-------~~~~i~~g~~~~~~~~~~~~~~~i~~i 440 (475)
+|+++|+ +++..++++||||++++.+|+.++.|+|++.||+.. .+.++..||++++|+|+.++.|+|..+
T Consensus 282 ~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~ 361 (403)
T 3sjy_A 282 LVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSV 361 (403)
T ss_dssp CEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEe
Confidence 9999986 677789999999999999888899999999996531 146899999999999999999999988
Q ss_pred eeeccccCCcccccCceeeeCCC-EEEE
Q 011910 441 LHQIDLKTKKPMKKKVLFVKNGA-IVVC 467 (475)
Q Consensus 441 ~~~~~~~~g~~~~~~p~~l~~g~-~~~~ 467 (475)
... .-.....+|.++..|| ++++
T Consensus 362 ~~~----~~~~~l~~p~~~~~g~~r~~i 385 (403)
T 3sjy_A 362 KKD----EIEVELRRPVAVWSNNIRTVI 385 (403)
T ss_dssp CSS----EEEEEEEEEEECCSSSCEEEE
T ss_pred cCc----eEEEEeCCcEeeccCCEEEEE
Confidence 432 1233356899999999 7765
No 17
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.2e-39 Score=344.30 Aligned_cols=284 Identities=19% Similarity=0.198 Sum_probs=207.7
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+.+||+|+||+|||||||+++||+.+|.+.....- ..|. .....++|+.+.|++|||||..+..++.|
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V-------~~~~--~~~~~~~D~~~~EreRGITI~s~~~~~~~ 97 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSV-------KARK--AARHATSDWMAMERERGISVTTSVMQFPY 97 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHH-------HHC----------------------CTTTEEEEEE
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCccccccee-------ecCc--cccccccCChHHHHHCCCcEeeceEEEEE
Confidence 34578999999999999999999999999987543211 1110 01135799999999999999999999999
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.|||||||||.||..++.++++.+|+||+||||.+|+. .||+..+++|...++| .|++|||||++.+++
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~-------~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVE-------AQTRKLMDVCRMRATP-VMTFVNKMDREALHP 169 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSCCCCH
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcc-------cccHHHHHHHHHhCCc-eEEEEecccchhcch
Confidence 99999999999999999999999999999999999999975 7999999999999999 788999999987764
Q ss_pred hHHHHHHHHhhhhhHh----------------------------------------------------------------
Q 011910 238 SKERYDEIESKMTPFL---------------------------------------------------------------- 253 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l---------------------------------------------------------------- 253 (475)
. ..++++.+.+....
T Consensus 170 ~-~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (548)
T 3vqt_A 170 L-DVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDL 248 (548)
T ss_dssp H-HHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHH
T ss_pred h-HhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHH
Confidence 3 23333333221000
Q ss_pred ---hhhcC-------cccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCC---------CCCCCceE
Q 011910 254 ---KASGY-------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---------DPNGPFRM 314 (475)
Q Consensus 254 ---~~~~~-------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~---------~~~~~~~~ 314 (475)
...+. -...-+|++..||+++.|+..| |..+++.+|.|.. +.+.||..
T Consensus 249 ~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~L-------------Ld~iv~~~PsP~~~~~~~~~~~~~~~p~~a 315 (548)
T 3vqt_A 249 ALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREM-------------LDMFVEFAPGPQPRPAATRVVEPGEEAFTG 315 (548)
T ss_dssp HHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCSCCEEBSSSEECTTCSSCEE
T ss_pred HHHhhccCchhHHHHHhCCcceeeecccccCcCHHHH-------------HHHHHHhCCCCCCccccccccCCCCcCceE
Confidence 00000 0012357888899999999885 4456677887753 23578888
Q ss_pred EEEEEEc-----cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCC
Q 011910 315 PIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDIL 385 (475)
Q Consensus 315 ~v~~~~~-----~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~ 385 (475)
.|..+.. ..|.+.++||+||+|+.||+|+....+...+|..+... +.++++|.||++|++ .|+ .+++
T Consensus 316 ~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~ 391 (548)
T 3vqt_A 316 VVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGI--PNH--GTIK 391 (548)
T ss_dssp EEEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEE--ECS--SCCC
T ss_pred EEEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEe--cCC--ccCc
Confidence 8888763 36999999999999999999999988888888888775 468999999999995 565 4589
Q ss_pred ceeEEecCCCC
Q 011910 386 SGFVLSSVAKP 396 (475)
Q Consensus 386 ~G~vl~~~~~~ 396 (475)
.||+|++.+.+
T Consensus 392 ~GDTl~~~~~~ 402 (548)
T 3vqt_A 392 IGDTFTESKEV 402 (548)
T ss_dssp TTCEEESSSSC
T ss_pred cCCEecCCCCc
Confidence 99999987643
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2.3e-37 Score=327.77 Aligned_cols=268 Identities=24% Similarity=0.378 Sum_probs=203.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
+.++||+|+||+|||||||+++|++.+|.+..+.. ..+++|+...|+++|+|+......+.+.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~ 67 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKA 67 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEc
Confidence 46789999999999999999999998887654321 1457899999999999999888777664
Q ss_pred ----CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 159 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ----~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
.+.++|||||||.+|..++.++++.+|++|||||+.+|.. .|+.+++..+...++| +|+|+||||++.
T Consensus 68 ~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~-------~qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIE-------AQTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCC-------HHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 3789999999999999999999999999999999999964 6999999999999999 899999999965
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceE
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 314 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~ 314 (475)
++ .+.+.+++... +++. ..+++++||++|.|+.++ |..+++.++.|..+.+.||++
T Consensus 140 a~-----~~~v~~el~~~---lg~~---~~~vi~vSAktg~GI~~L-------------le~I~~~lp~p~~~~~~pl~~ 195 (600)
T 2ywe_A 140 AD-----VDRVKKQIEEV---LGLD---PEEAILASAKEGIGIEEI-------------LEAIVNRIPPPKGDPQKPLKA 195 (600)
T ss_dssp CC-----HHHHHHHHHHT---SCCC---GGGCEECBTTTTBSHHHH-------------HHHHHHHSCCCCCCTTSCCEE
T ss_pred cC-----HHHHHHHHHHh---hCCC---cccEEEEEeecCCCchHH-------------HHHHHHhcccccccccCCcce
Confidence 43 22333333332 3443 236899999999999985 445667888888888899999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC---CccceeeCCCCEEEEEeccC-CccCCCcee
Q 011910 315 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGF 388 (475)
Q Consensus 315 ~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~-~~~~i~~G~ 388 (475)
.|.+++ +..|++++|+|.+|+|++||.|.+.|.+...+|.+|..+ +.+++++.||+++.+. .|+ ...++++||
T Consensus 196 lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GD 274 (600)
T 2ywe_A 196 LIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGD 274 (600)
T ss_dssp EEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTC
T ss_pred eEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCC
Confidence 999887 457999999999999999999999999988899999875 3678999999987764 454 346799999
Q ss_pred EEecCCCC
Q 011910 389 VLSSVAKP 396 (475)
Q Consensus 389 vl~~~~~~ 396 (475)
+|+.++.|
T Consensus 275 tl~~~~~~ 282 (600)
T 2ywe_A 275 TITHAKNP 282 (600)
T ss_dssp EEEESSSC
T ss_pred EEEeCCCc
Confidence 99998765
No 19
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.5e-37 Score=338.72 Aligned_cols=279 Identities=24% Similarity=0.286 Sum_probs=201.8
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+++||+|+||+|||||||+++||+.+|.+.... ... ....++|+.+.|++|||||+.+..++.|.
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g-------~v~------~~~~~~D~~~~E~eRGITI~s~~~s~~~~ 76 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLG-------EVH------DGAATTDWMVQEQERGITITSAAVTTFWK 76 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEEC
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCc-------eec------CCCccCCChHHHHHcCCeEEeeeEEEEec
Confidence 36789999999999999999999999998654211 000 12457999999999999999999999875
Q ss_pred -------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 159 -------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 159 -------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
++.|||||||||.||..++.++++.+|+||+||||.+|+. .||+..++++...++| .|+||||||
T Consensus 77 ~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-------~qT~~v~~~a~~~~lp-~i~~iNKiD 148 (709)
T 4fn5_A 77 GSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-------PQSETVWRQANKYGVP-RIVYVNKMD 148 (709)
T ss_dssp CTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHHTCC-EEEEEECSS
T ss_pred cCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eEEEEcccc
Confidence 5899999999999999999999999999999999999985 7999999999999999 789999999
Q ss_pred CCCCCchHHHHHHHHhhhhh------------------------------------------------------------
Q 011910 232 DHTVNWSKERYDEIESKMTP------------------------------------------------------------ 251 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~------------------------------------------------------------ 251 (475)
++.+++. ...+++.+.+..
T Consensus 149 r~~a~~~-~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 227 (709)
T 4fn5_A 149 RQGANFL-RVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVE 227 (709)
T ss_dssp STTCCHH-HHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_pred ccCccHH-HHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHH
Confidence 9766532 222333221110
Q ss_pred ------------HhhhhcC-------------cccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCC-
Q 011910 252 ------------FLKASGY-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP- 305 (475)
Q Consensus 252 ------------~l~~~~~-------------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~- 305 (475)
++....+ ....-.|++..||+++.|+..| |..+++.+|.|.
T Consensus 228 ~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~l-------------Ld~i~~~lPsP~~ 294 (709)
T 4fn5_A 228 AAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLV-------------LDAVIDYLPAPTE 294 (709)
T ss_dssp HHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHH-------------HHHHHHHSCCTTS
T ss_pred HHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHH-------------HHHHHhhCCCCcc
Confidence 0000000 0012357788889888888764 444667788763
Q ss_pred -------------------CCCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----C
Q 011910 306 -------------------RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----D 360 (475)
Q Consensus 306 -------------------~~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~ 360 (475)
.+.+.||.+.|.++. +..|.++++||+||+|+.||+|+....+...+|..+... .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~ 374 (709)
T 4fn5_A 295 IPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQR 374 (709)
T ss_dssp SCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCC
T ss_pred cccccccCCccccccccccCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeeccee
Confidence 356789999999987 357999999999999999999998877777788887664 5
Q ss_pred ccceeeCCCCEEEEEeccCCccCCCceeEEecCCCC
Q 011910 361 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (475)
Q Consensus 361 ~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (475)
.++++|.||++|+ +.|++ ++++|++|++.+.+
T Consensus 375 ~~v~~~~aGdIv~--i~Gl~--~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 375 EEIKEVRAGDIAA--LIGMK--DVTTGDTLCSIEKP 406 (709)
T ss_dssp CEESEECTTCEEE--ECSCS--SCCTTCEEECSSSC
T ss_pred eEeeeecCCCeee--ecCCC--cCccCCEecCCCcc
Confidence 7899999999999 56774 48999999987643
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=3.1e-36 Score=319.75 Aligned_cols=268 Identities=23% Similarity=0.359 Sum_probs=198.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
..++||+|+||+|||||||+++|++.+|.+..+.. ..+++|+...|+++|+|+......+.+.
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~ 65 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKA 65 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEec
Confidence 35789999999999999999999998887654321 2457899999999999999888887765
Q ss_pred ----CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 159 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ----~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
.+.++|||||||.+|..++.++++.+|++|||||+.+|.. .|+.+++..+...++| +|+|+||+|++.
T Consensus 66 ~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~-------~qt~~~~~~~~~~~ip-iIvViNKiDl~~ 137 (599)
T 3cb4_D 66 SDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE-------AQTLANCYTAMEMDLE-VVPVLNKIDLPA 137 (599)
T ss_dssp TTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC-------THHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEeeeccCccc
Confidence 3789999999999999999999999999999999999964 6999999999999999 899999999965
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceE
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 314 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~ 314 (475)
++ .+.+.+++... +++. ..+++++||++|.|+.++ |..+++.++.|..+.+.|+++
T Consensus 138 a~-----~~~v~~ei~~~---lg~~---~~~vi~vSAktg~GI~~L-------------l~~I~~~lp~p~~~~~~p~~a 193 (599)
T 3cb4_D 138 AD-----PERVAEEIEDI---VGID---ATDAVRCSAKTGVGVQDV-------------LERLVRDIPPPEGDPEGPLQA 193 (599)
T ss_dssp CC-----HHHHHHHHHHH---TCCC---CTTCEEECTTTCTTHHHH-------------HHHHHHHSCCCCCCTTSCCEE
T ss_pred cc-----HHHHHHHHHHH---hCCC---cceEEEeecccCCCchhH-------------HHHHhhcCCCccccccCCcee
Confidence 43 23333444333 2433 235899999999999985 445667788888888899999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC---CccceeeCCCCEEEEEeccC-CccCCCcee
Q 011910 315 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGF 388 (475)
Q Consensus 315 ~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~-~~~~i~~G~ 388 (475)
.|.+++ +..|++++|+|.+|+|+.||++.+.+.+...+|.+|... ..++.++.||+++.+ +.|+ ...++++||
T Consensus 194 lI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GD 272 (599)
T 3cb4_D 194 LIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGD 272 (599)
T ss_dssp EEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTC
T ss_pred eeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCC
Confidence 999987 468999999999999999999999999998899998874 467899999998776 3444 346789999
Q ss_pred EEecCCCC
Q 011910 389 VLSSVAKP 396 (475)
Q Consensus 389 vl~~~~~~ 396 (475)
+|++++.+
T Consensus 273 tl~~~~~~ 280 (599)
T 3cb4_D 273 TLTLARNP 280 (599)
T ss_dssp EEEESSSC
T ss_pred EeeecCCc
Confidence 99997764
No 21
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=5.1e-39 Score=345.97 Aligned_cols=274 Identities=22% Similarity=0.306 Sum_probs=217.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+++||+|+||+|||||||+++||+.+|.+.... +- -....++|+.+.|++||+||+.+..++.|.++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g------------~v-~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~ 67 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELG------------SV-DKGTTRTDNTLLERQRGITIQTGITSFQWENT 67 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCS------------SC-CCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcccc------------cc-ccCCcccCCcHHHHhCCCcEEeeeEEEEECCE
Confidence 478999999999999999999999999876421 10 11245799999999999999999999999999
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHH
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~ 240 (475)
.|||||||||.||..++.++++.+|+||+||||.+|+. .||+.+++++..+++| .|++|||||++.+++. .
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~-------~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~-~ 138 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQ-------AQTRILFHALRKMGIP-TIFFINKIDQNGIDLS-T 138 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTC-------SHHHHHHHHHHHHTCS-CEECCEECCSSSCCSH-H
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-eEEEEeccccccCCHH-H
Confidence 99999999999999999999999999999999999975 7999999999999999 6789999999877754 2
Q ss_pred HHHHHHhhhhh--------------------------------------HhhhhcC-------------cccCCeeEEEe
Q 011910 241 RYDEIESKMTP--------------------------------------FLKASGY-------------NVKKDVQFLPI 269 (475)
Q Consensus 241 ~~~~i~~~l~~--------------------------------------~l~~~~~-------------~~~~~~~iipi 269 (475)
.++++.+.+.. ++....+ ....-.|++..
T Consensus 139 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 139 VYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHG 218 (638)
T ss_dssp HHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccc
Confidence 33333332210 0000000 00123578888
Q ss_pred ecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCC
Q 011910 270 SGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN 347 (475)
Q Consensus 270 Sa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~ 347 (475)
||+++.|+..| |..+.+.+|.|....+.||.+.|.++. +..|.++++||+||+|+.||.|.+...
T Consensus 219 Sa~~~~Gv~~L-------------Ld~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~ 285 (638)
T 3j25_A 219 SAKSNIGIDNL-------------IEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK 285 (638)
T ss_dssp CSTTCCSHHHH-------------HHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC
T ss_pred ccccCCCchhH-------------hhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC
Confidence 99999999874 444567788888778889999999887 457999999999999999999988655
Q ss_pred CCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCceeEEecCCC
Q 011910 348 KAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 395 (475)
Q Consensus 348 ~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (475)
+ ..+|..+... ..++++|.||++|++ .+ ..++.|+++++...
T Consensus 286 ~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g---~~~~~~~tl~d~~~ 331 (638)
T 3j25_A 286 E-KIKVTEMYTSINGELCKIDRAYSGEIVIL--QN---EFLKLNSVLGDTKL 331 (638)
T ss_dssp C-CSSBCCCCSSCCCCBSCCCTTBCCCCSCC--CS---SSCSSEECSSSSSS
T ss_pred c-ceeEEeeecccccccccccccccceEEEE--ec---cccccCceecCCCC
Confidence 4 3456666543 568899999999884 43 45778999887653
No 22
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=3.1e-34 Score=301.35 Aligned_cols=280 Identities=19% Similarity=0.210 Sum_probs=215.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.++|+|+||+|+|||||+++|++..|.+.....-. .+. ......+|....|+.+|+|+......+.+.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~-------~~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 81 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIK-------SRK--AARHATSDWMELEKQRGISVTTSVMQFPYKD 81 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHH-------TC------CCHHHHHHHHHHHCCSSSSSEEEEEETT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeee-------ccc--cccceecccchhhhcCCeeEEEeEEEEEeCC
Confidence 4578999999999999999999998888764322110 000 0112356777789999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
+.++|||||||.+|...+.++++.+|++|+|||+..|.. .++..++..+...++| +|+|+||+|+...+. .
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~-------~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~-~ 152 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVE-------PRTIKLMEVCRLRHTP-IMTFINKMDRDTRPS-I 152 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHHHHHTTTCC-EEEEEECTTSCCSCH-H
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCCccccH-H
Confidence 999999999999999999999999999999999999864 6899999999999999 899999999965542 2
Q ss_pred HHHHHHHhhhhhHhhh----------------------------------------------------------------
Q 011910 240 ERYDEIESKMTPFLKA---------------------------------------------------------------- 255 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~---------------------------------------------------------------- 255 (475)
..++++.+.+......
T Consensus 153 ~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l 232 (528)
T 3tr5_A 153 ELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIEL 232 (528)
T ss_dssp HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcch
Confidence 2333333322110000
Q ss_pred ----------hcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCC---------CCCCceEEE
Q 011910 256 ----------SGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPFRMPI 316 (475)
Q Consensus 256 ----------~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~---------~~~~~~~~v 316 (475)
..+.....+|++++||++|.|+.+| |..+++.+|.|... .+.||...|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~L-------------ld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~V 299 (528)
T 3tr5_A 233 VKGASHPFEREGYLKGELTPIFFGSAINNFGVGEL-------------LDAFVKEAPPPQGRETNSRLVKPEEEKFSGFV 299 (528)
T ss_dssp HHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEE
T ss_pred hhhhhhHHHHHHHhcCceeEEEeccccCCccHHHH-------------HHHHHHhCCCCCcccccceeeCCCcccceeEE
Confidence 0000012348999999999999985 34455667766432 247899999
Q ss_pred EEEEc-----cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCce
Q 011910 317 IDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 387 (475)
Q Consensus 317 ~~~~~-----~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (475)
+++.. .+|+++++||.+|+|+.||.|...+.+...+|.++... +.++++|.|||+|++ .++ .+++.|
T Consensus 300 FKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~--~~l--~~~~~G 375 (528)
T 3tr5_A 300 FKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGL--HNH--GTIQIG 375 (528)
T ss_dssp EEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEE--EES--SSCCTT
T ss_pred EEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEE--cCC--CCCccC
Confidence 88762 67999999999999999999999999999999998863 678999999999985 454 458899
Q ss_pred eEEecCC
Q 011910 388 FVLSSVA 394 (475)
Q Consensus 388 ~vl~~~~ 394 (475)
|+|++.+
T Consensus 376 Dtl~~~~ 382 (528)
T 3tr5_A 376 DTFTQGE 382 (528)
T ss_dssp CEEESSC
T ss_pred CEEcCCC
Confidence 9999854
No 23
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=4.6e-33 Score=302.28 Aligned_cols=274 Identities=23% Similarity=0.249 Sum_probs=216.5
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+.++|+|+||+|||||||+++|++.+|.+.... ... ...+++|....|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g-------~v~------~g~~~~D~~~~E~~rgiTi~~~~~~~~~~ 73 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG-------EVH------DGAATMDWMEQEQERGITITSAATTAFWS 73 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc-------ccC------CCceeecChhhHHhcCceeeeceEEEEEC
Confidence 35678999999999999999999998877654321 000 11357888999999999999998888888
Q ss_pred C-------eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 159 T-------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 159 ~-------~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
+ +.++|||||||.+|..++.++++.+|++|+|||+..|.. .++.+++.++...++| +++|+||+|
T Consensus 74 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~qt~~~~~~~~~~~ip-~ilviNKiD 145 (704)
T 2rdo_7 74 GMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ-------PQSETVWRQANKYKVP-RIAFVNKMD 145 (704)
T ss_pred CccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 7 899999999999999999999999999999999999864 6899999999999999 889999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhc--------------------------Cc--------------------------
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASG--------------------------YN-------------------------- 259 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~--------------------------~~-------------------------- 259 (475)
+..++ ++.+.++++..+.... |.
T Consensus 146 ~~~~~-----~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 220 (704)
T 2rdo_7 146 RMGAN-----FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQ 220 (704)
T ss_pred ccccc-----HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHH
Confidence 96543 2233333333221100 00
Q ss_pred -------------------------------------ccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcC
Q 011910 260 -------------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE 302 (475)
Q Consensus 260 -------------------------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~ 302 (475)
....+|++..||++|.|+..| |..+++.+|
T Consensus 221 ~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~L-------------Ld~i~~~lP 287 (704)
T 2rdo_7 221 NLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAM-------------LDAVIDYLP 287 (704)
T ss_pred HHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHH-------------HHHHHHHCC
Confidence 011257888899999998875 334556666
Q ss_pred CCCC--------------------CCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC-
Q 011910 303 ITPR--------------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD- 359 (475)
Q Consensus 303 ~~~~--------------------~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~- 359 (475)
.|.. +.+.||.+.|++++ +..|++++|||++|+|+.||+|+..+.+...+|.+|...
T Consensus 288 sP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~ 367 (704)
T 2rdo_7 288 SPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMH 367 (704)
T ss_pred ChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEe
Confidence 6532 25679999999998 457999999999999999999999988888999999864
Q ss_pred ---CccceeeCCCCEEEEEeccCCccCCCceeEEecCCC
Q 011910 360 ---DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 395 (475)
Q Consensus 360 ---~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (475)
+.++++|.||++|++. |++ ++++||+|++.+.
T Consensus 368 g~~~~~v~~~~aGdIv~i~--gl~--~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 368 ANKREEIKEVRAGDIAAAI--GLK--DVTTGDTLCDPDA 402 (704)
T ss_pred CCCceEcceeCCCCEEEEe--Ccc--cCccCCEEeCCCc
Confidence 5789999999999974 664 4799999998764
No 24
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=6.4e-33 Score=291.65 Aligned_cols=280 Identities=20% Similarity=0.221 Sum_probs=191.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.++|+|+||+|||||||+++|++..+.+....... ++.. ....++|....|+.+|+|+......+.+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~--------~~~~-~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~ 81 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVK--------GRGS-NQHAKSDWMEMEKQRGISITTSVMQFPYHD 81 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceee--------cCcc-ccceeeccchhcccCCcceeeeEEEEEECC
Confidence 4568999999999999999999987766553211000 0000 012356778889999999999999999999
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
+.++|||||||.+|...+.++++.+|++|+|+|+..|.. .++++++..+...++| +++|+||+|+...+. .
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~-------~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-~ 152 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE-------DRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-M 152 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-H
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch-------HHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-H
Confidence 999999999999999999999999999999999999864 6899999999888999 899999999965542 2
Q ss_pred HHHHHHHhhhhhHhhh------------------------h----cC---------------------------------
Q 011910 240 ERYDEIESKMTPFLKA------------------------S----GY--------------------------------- 258 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~------------------------~----~~--------------------------------- 258 (475)
+.++++.+.+...... + |.
T Consensus 153 ~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~ 232 (529)
T 2h5e_A 153 ELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELE 232 (529)
T ss_dssp HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccc
Confidence 2333333221100000 0 00
Q ss_pred --------------cccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCC---------CCCCceEE
Q 011910 259 --------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPFRMP 315 (475)
Q Consensus 259 --------------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~---------~~~~~~~~ 315 (475)
.....+|+++.||++|.|+..| |..+++.+|+|... .+.||.+.
T Consensus 233 l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~~P~P~~~~~~~~~~~~~~~~~~~~ 299 (529)
T 2h5e_A 233 LVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHM-------------LDGLVEWAPAPMPRQTDTRTVEASEDKFTGF 299 (529)
T ss_dssp HHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHHH-------------HHHHHHHSCSSCCEEBSSCEECTTCCSCEEE
T ss_pred hhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHHH-------------HHHHHHhCCCCCcccccccccCCCCCCeEEE
Confidence 0011246666677777776653 33344556766432 14688888
Q ss_pred EEEEEc-----cCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCc
Q 011910 316 IIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 386 (475)
Q Consensus 316 v~~~~~-----~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (475)
|+++.. ..|++++|||.||+|+.||+|.+.+.+...+|.+|+.+ +.++++|.|||+|++ .++ .++++
T Consensus 300 vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~ 375 (529)
T 2h5e_A 300 VFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL--HNH--GTIQI 375 (529)
T ss_dssp EEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEE--CCS--SCCCT
T ss_pred EEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEE--ecc--CCCcc
Confidence 888742 47999999999999999999999999999999999975 678999999999985 555 45889
Q ss_pred eeEEecCC
Q 011910 387 GFVLSSVA 394 (475)
Q Consensus 387 G~vl~~~~ 394 (475)
||+|++++
T Consensus 376 Gdtl~~~~ 383 (529)
T 2h5e_A 376 GDTFTQGE 383 (529)
T ss_dssp TCEEESSC
T ss_pred CCEeecCC
Confidence 99999866
No 25
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=5.1e-32 Score=293.78 Aligned_cols=275 Identities=23% Similarity=0.265 Sum_probs=200.0
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+.++|+|+||+|||||||+++|++.++.+..... .. ....++|+...|+.+|+|+......+.+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~-------v~------~~~~~~d~~~~E~~~giTi~~~~~~~~~~ 75 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE-------VH------EGAATMDFMEQERERGITITAAVTTCFWK 75 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEET
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccce-------ec------CCceeccCchhhhhcccccccceEEEEEC
Confidence 356789999999999999999999988776543210 00 01346888899999999999999999999
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
++.++|||||||.+|...+.++++.+|++|+|||+..|.. .++..++..+...++| +++|+||+|+...+
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-- 145 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE-------PQSETVWRQAEKYKVP-RIAFANKMDKTGAD-- 145 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcc-------hhhHHHHHHHHHcCCC-EEEEEECCCcccCC--
Confidence 9999999999999999999999999999999999999864 5899999999999999 88999999996543
Q ss_pred HHHHHHHHhhhhhHhhhh--------------------------------c-----------------------------
Q 011910 239 KERYDEIESKMTPFLKAS--------------------------------G----------------------------- 257 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~--------------------------------~----------------------------- 257 (475)
+..+.+++...+... |
T Consensus 146 ---~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e 222 (691)
T 1dar_A 146 ---LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAAD 222 (691)
T ss_dssp ---HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 222222222222100 0
Q ss_pred --------------C-------------cccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCC----
Q 011910 258 --------------Y-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 306 (475)
Q Consensus 258 --------------~-------------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~---- 306 (475)
+ ....-+|+++.||++|.|+..| |..+++.+|.|..
T Consensus 223 ~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~~ 289 (691)
T 1dar_A 223 FDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLL-------------LDAVVDYLPSPLDIPPI 289 (691)
T ss_dssp TCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHH-------------HHHHHHHSCCTTTSCCE
T ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHH-------------HHHHHHhCCChhhcccc
Confidence 0 0011268889999999998875 4446667777653
Q ss_pred --------------CCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----Cccceee
Q 011910 307 --------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHA 366 (475)
Q Consensus 307 --------------~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a 366 (475)
+.+.||.+.|++++ +..|+++++||++|+|+.||+|+..+.+...+|..|... +.++++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~ 369 (691)
T 1dar_A 290 KGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEEL 369 (691)
T ss_dssp EEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEE
T ss_pred cccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEccee
Confidence 35789999999988 467999999999999999999999888888888888764 4689999
Q ss_pred CCCCEEEEEeccCCccCCCceeEEecCCCC
Q 011910 367 GPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (475)
Q Consensus 367 ~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (475)
.||++|++. |++ ++++||+|++.+.+
T Consensus 370 ~aGdI~~i~--gl~--~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 370 KAGDLGAVV--GLK--ETITGDTLVGEDAP 395 (691)
T ss_dssp ETTCEEEEE--CCS--SCCTTCEEEETTCC
T ss_pred cCCCEEEEe--Ccc--cCccCCEEecCCCc
Confidence 999999964 664 47899999987654
No 26
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=1.6e-34 Score=302.28 Aligned_cols=255 Identities=26% Similarity=0.331 Sum_probs=197.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-CC
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 159 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~ 159 (475)
+.+.|+++||+|||||||+++|..... ......|+|.+.....+.+ .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-------------------------------~~~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-------------------------------AAMEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-------------------------------HHSSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccccCCceeEEEeEEEEEeCCC
Confidence 457899999999999999999953221 0112367888887777776 56
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
..++|||||||.+|..++.++++.+|++|||+|+.+|.+ .|+.+++.++...++| +|||+||+|++..++..
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~-------~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~~ 123 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM-------KQTVESIQHAKDAHVP-IVLAINKCDKAEADPEK 123 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCC-------HHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCCS
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEecccccccchHH
Confidence 789999999999999999999999999999999999976 6999999999999999 99999999996544321
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCCCCCCceEEEEEE
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK 319 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~~~~~~~~~v~~~ 319 (475)
+..........+..+ ...++++|+||++|.|+.+|++. +...+.. ..+..+++.|++++|.++
T Consensus 124 --v~~~l~~~~~~~e~~----~~~~~iv~vSAktG~GI~eLle~----------I~~l~~~-~~~~~~~~~~~~~~V~e~ 186 (537)
T 3izy_P 124 --VKKELLAYDVVCEDY----GGDVQAVHVSALTGENMMALAEA----------TIALAEM-LELKADPTGAVEGTVIES 186 (537)
T ss_dssp --SSSHHHHTTSCCCCS----SSSEEECCCCSSSSCSSHHHHHH----------HHHHHTT-CCCCCCSSSSEEEEEEEE
T ss_pred --HHHHHHhhhhhHHhc----CCCceEEEEECCCCCCchhHHHH----------HHHhhhc-ccccCCCCCCcceeEEEE
Confidence 111111111111111 13579999999999999997542 3333332 334456678999999999
Q ss_pred E--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECC-ccceeeCCCCEEEEEeccCCccCCCceeEEecCCCC
Q 011910 320 F--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD-NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (475)
Q Consensus 320 ~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~-~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (475)
+ ++.|++++|+|.+|+|++||.+.. +....+|++|+.++ .++++|.||++|+| .|++ ....+||+|+..+++
T Consensus 187 ~~~~g~G~V~~g~V~~G~l~~Gd~v~~--g~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 187 FTDKGRGPVTTAIIQRGTLRKGSILVA--GKSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp CCCTTCCCCEEEEEEEECCSSEEEECC--SSCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSCCSS
T ss_pred EEeCCCceEEEEEEecCEEEcCCEEEe--CCceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEecCCh
Confidence 8 578999999999999999998854 44568999999985 79999999999985 5665 335899999988754
No 27
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=2.2e-33 Score=291.43 Aligned_cols=250 Identities=28% Similarity=0.349 Sum_probs=193.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.++|+++||+|||||||+++|+...- .....+|+|++.....+.+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v-------------------------------~~~e~~GIT~~i~~~~v~~~~ 50 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKV-------------------------------ASGEAGGITQHIGAYHVETEN 50 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHH-------------------------------SBTTBCCCCCCSSCCCCCTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCC-------------------------------ccccCCCeeEeEEEEEEEECC
Confidence 3568999999999999999999853210 011237899988888888889
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
+.++|||||||.+|..++.++++.+|++|||||+.+|.+ .||++++.++...++| +|+|+||||++..++.
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~-------~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~- 121 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM-------PQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPD- 121 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSC-------TTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCC-
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCcc-------HHHHHHHHHHHhcCce-EEEEEEeccccccCHH-
Confidence 999999999999999999999999999999999999975 6999999999999999 9999999999554321
Q ss_pred HHHHHHHhhhhhHhhhhcCcc---cCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhh--cCCCCCCCCCCceE
Q 011910 240 ERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR--IEITPRDPNGPFRM 314 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~---~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~--l~~~~~~~~~~~~~ 314 (475)
.+..+ +...++.+ ...++++++||++|.|+.++++ .++.. +..+..+++.|+++
T Consensus 122 ----~v~~~----l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle-------------~I~~~~~~~~~~~~~~~~~~~ 180 (501)
T 1zo1_I 122 ----RVKNE----LSQYGILPEEWGGESQFVHVSAKAGTGIDELLD-------------AILLQAEVLELKAVRKGMASG 180 (501)
T ss_dssp ----CTTCC----CCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHH-------------HTTTTCCCSTTTSCCCSBCEE
T ss_pred ----HHHHH----HHHhhhhHHHhCCCccEEEEeeeeccCcchhhh-------------hhhhhhhhhcccccccccccc
Confidence 11122 21111111 1247999999999999998533 12221 22233455678899
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC-CccceeeCCCCEEEEEeccCCccCCCceeEEe
Q 011910 315 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (475)
Q Consensus 315 ~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (475)
.|.+++ ++.|++++|+|.+|+|++||.|++++ ...+|++|... +.++++|.||+.|.+. |++. ....|++++
T Consensus 181 ~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~~-~~~~Gd~~~ 255 (501)
T 1zo1_I 181 AVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF--EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLSG-VPAAGDEVT 255 (501)
T ss_dssp EEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB--SSCEEEEECCTTTTSEEEECCSSCSSSE--EECS-CCCTTEEEE
T ss_pred ceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc--ceeEEEEEEecCCCcCcEeccCCcEEEe--CCCC-CCCCCCEEE
Confidence 999998 47899999999999999999999865 45699999864 6799999999999853 5442 247899998
Q ss_pred cCCC
Q 011910 392 SVAK 395 (475)
Q Consensus 392 ~~~~ 395 (475)
...+
T Consensus 256 ~~~~ 259 (501)
T 1zo1_I 256 VVRD 259 (501)
T ss_dssp EECS
T ss_pred ecCC
Confidence 7653
No 28
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.98 E-value=2e-31 Score=289.18 Aligned_cols=275 Identities=23% Similarity=0.259 Sum_probs=199.8
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
.....++|+|+||+|+|||||+++|++..+.+..... .. ....++|....|+++|+|+......+.+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~-------v~------~~~~~~D~~~~e~~~giTi~~~~~~~~~ 72 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE-------TH------EGASQMDWMEQEQDRGITITSAATTAAW 72 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc-------cc------CCceecccchhhhhcCceEeeeeEEEEE
Confidence 4466799999999999999999999987776543210 00 0134678888999999999999999999
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~ 237 (475)
.++.++|||||||.+|...+.++++.+|++|+|+|+..|.. .++...+..+...++| +|+|+||+|+...+
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~-------~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~- 143 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVE-------PQTETVWRQATTYGVP-RIVFVNKMDKLGAN- 143 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECCCccccc-
Confidence 99999999999999999999999999999999999999864 5888999999989999 88999999996543
Q ss_pred hHHHHHHHHhhhhhHhhhhc--------------------------Cc--------------------------------
Q 011910 238 SKERYDEIESKMTPFLKASG--------------------------YN-------------------------------- 259 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~--------------------------~~-------------------------------- 259 (475)
+..+.++++..+.... |.
T Consensus 144 ----~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~ 219 (693)
T 2xex_A 144 ----FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVA 219 (693)
T ss_dssp ----HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 2223333333221100 00
Q ss_pred ------------------------------ccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCC---
Q 011910 260 ------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR--- 306 (475)
Q Consensus 260 ------------------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~--- 306 (475)
...-+|+++.||++|.|+..| |..+++.+|.|..
T Consensus 220 e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~ 286 (693)
T 2xex_A 220 ETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLM-------------LDAVIDYLPSPLDVKP 286 (693)
T ss_dssp TTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCGGGSCC
T ss_pred hCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHH-------------HHHHHHHCCCchhccc
Confidence 001257788888888888764 3445666777643
Q ss_pred -----------------CCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----Cccc
Q 011910 307 -----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRV 363 (475)
Q Consensus 307 -----------------~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v 363 (475)
+.+.||.+.|++++ +..|++++|||++|+|+.||+|+....+...+|..|... ..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v 366 (693)
T 2xex_A 287 IIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEI 366 (693)
T ss_dssp EEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEEC
T ss_pred ccccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEc
Confidence 25789999999988 457999999999999999999999887888899999765 4689
Q ss_pred eeeCCCCEEEEEeccCCccCCCceeEEecCCC
Q 011910 364 RHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 395 (475)
Q Consensus 364 ~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (475)
++|.||++|++. |++ ++++||+|++.+.
T Consensus 367 ~~~~aGdI~~i~--gl~--~~~~GdTl~~~~~ 394 (693)
T 2xex_A 367 DTVYSGDIAAAV--GLK--DTGTGDTLCGEKN 394 (693)
T ss_dssp SEEETTCEEEEE--SCS--SCCTTCEEEETTC
T ss_pred cccCcCCEEEEe--Ccc--cCccCCEEecCCC
Confidence 999999999964 664 4789999998764
No 29
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.98 E-value=3e-31 Score=286.78 Aligned_cols=275 Identities=24% Similarity=0.292 Sum_probs=213.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.++|+|+||+|||||||+++|++..+.+... |.- .....++|....|+.+|+|+......+.+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~------------G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~ 73 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERR------------GRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG 73 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSC------------CCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcc------------cee-cCCcccccCCHHHHhcCCeEEecceEEeeCC
Confidence 456899999999999999999998776653321 110 1224578888899999999999888899999
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
..++|+|||||.+|...+.++++.+|++++|+|+..|.. .++++++..+...++| +|+|+||+|+. .. ..
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~-------~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~-~~ 143 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQ-------VGTERAWTVAERLGLP-RMVVVTKLDKG-GD-YY 143 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-EEEEEECGGGC-CC-HH
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccc-------hhHHHHHHHHHHccCC-EEEEecCCchh-hh-HH
Confidence 999999999999999999999999999999999999864 6899999999999999 78899999996 33 22
Q ss_pred HHHHHHHhhhh-------------------------------------------------------------------hH
Q 011910 240 ERYDEIESKMT-------------------------------------------------------------------PF 252 (475)
Q Consensus 240 ~~~~~i~~~l~-------------------------------------------------------------------~~ 252 (475)
+..+++.+.+. .+
T Consensus 144 ~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~ 223 (665)
T 2dy1_A 144 ALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKY 223 (665)
T ss_dssp HHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 23333332211 00
Q ss_pred hhhhcCc-------------ccCCeeEEEeecccccccccccccCCCCCCChhhHHHHhhhcCCCCCC-CCCCceEEEEE
Q 011910 253 LKASGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRMPIID 318 (475)
Q Consensus 253 l~~~~~~-------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~l~~~l~~l~~~~~~-~~~~~~~~v~~ 318 (475)
+....+. ....+|++++||++|.|+..+ |..+++.+|.|... .+.||.+.|.+
T Consensus 224 l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~L-------------l~~i~~~lp~p~~~~~~~p~~~~V~k 290 (665)
T 2dy1_A 224 LEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPL-------------LELILEALPSPTERFGDGPPLAKVFK 290 (665)
T ss_dssp HHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCHHHHHCSCSCEEEEEE
T ss_pred HCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHH-------------HHHHHHhCCCccccCCCCCeEEEEEE
Confidence 0000000 001268999999999999875 44455667766543 67899999999
Q ss_pred EE--ccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCceeEEec
Q 011910 319 KF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (475)
Q Consensus 319 ~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (475)
++ +..|++++|||++|+|+.||+|++.+ ...+|.+|+.. +.++++|.||++|++ .|++ ++++||+|++
T Consensus 291 ~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i--~gl~--~~~~Gdtl~~ 364 (665)
T 2dy1_A 291 VQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGV--PKAE--GLHRGMVLWQ 364 (665)
T ss_dssp EEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEE--SSCT--TCCTTCEEES
T ss_pred EEEcCCCCeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEE--eCCc--cCccCCEEec
Confidence 88 46899999999999999999999887 67899998764 568999999999996 4664 5889999998
Q ss_pred CCCC
Q 011910 393 VAKP 396 (475)
Q Consensus 393 ~~~~ 396 (475)
.+.+
T Consensus 365 ~~~~ 368 (665)
T 2dy1_A 365 GEKP 368 (665)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7654
No 30
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.98 E-value=1.2e-31 Score=284.78 Aligned_cols=263 Identities=21% Similarity=0.375 Sum_probs=190.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee--
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 157 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-- 157 (475)
.+.++|+++||+|||||||+++|+..... +. ..+|+|...+...+.+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~---------------------------~~----e~ggiT~~ig~~~~~~~~ 51 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVA---------------------------SR----EAGGITQHIGATEIPMDV 51 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHS---------------------------CC--------CCCBTTEEEEEHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCc---------------------------cc----cCCceecccCeEEEeech
Confidence 35678999999999999999999643211 00 0124444433333221
Q ss_pred ----------------CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCc
Q 011910 158 ----------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 221 (475)
Q Consensus 158 ----------------~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~ 221 (475)
....++|||||||.+|...+.++++.+|++|||+|+.+|+. .||.+++.++...++|
T Consensus 52 ~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~-------~qT~e~l~~l~~~~vP 124 (594)
T 1g7s_A 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYRTP 124 (594)
T ss_dssp HHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCC
T ss_pred hhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCe
Confidence 22359999999999999999999999999999999999964 6999999999999999
Q ss_pred eEEEEEEccCCCCCCch------------------HHHHHHHHhhhhhHhhhhcCcc---------cCCeeEEEeecccc
Q 011910 222 KLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMG 274 (475)
Q Consensus 222 ~iivviNKiD~~~~~~~------------------~~~~~~i~~~l~~~l~~~~~~~---------~~~~~iipiSa~~g 274 (475)
+|+|+||||+.. .|. .+.+.+...++...|...++.. ...++++|+||++|
T Consensus 125 -iIVViNKiDl~~-~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 125 -FVVAANKIDRIH-GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp -EEEEEECGGGST-TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred -EEEEeccccccc-ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 899999999953 232 1234444444555555555431 23569999999999
Q ss_pred cccccccccCCCCCCChhhHHHHhhh-cC-CCCCCCCCCceEEEEEEE--ccCCeEEEEEEEEeeEecCCeEEecCCCC-
Q 011910 275 LNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA- 349 (475)
Q Consensus 275 ~gi~~l~~~~~~~w~~g~~l~~~l~~-l~-~~~~~~~~~~~~~v~~~~--~~~G~v~~g~v~~G~l~~gd~v~i~p~~~- 349 (475)
.|+.+|++. +...+.. ++ ....+.+.|+++.|.+++ ++.|++++|+|.+|+|++||.|+++|.+.
T Consensus 203 ~GI~eLl~~----------I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~ 272 (594)
T 1g7s_A 203 EGIPELLTM----------LMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDV 272 (594)
T ss_dssp TTHHHHHHH----------HHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSE
T ss_pred CCchhHHHH----------HHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCc
Confidence 999997542 3333322 11 112345789999999988 56799999999999999999999999876
Q ss_pred -eEEEEEEEEC------------CccceeeC--CCCEEEEEeccCCccCCCceeEEecCCCC
Q 011910 350 -QVKVLAIYCD------------DNRVRHAG--PGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (475)
Q Consensus 350 -~~~V~si~~~------------~~~v~~a~--aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (475)
.++|++|... ..++++|. +|+.|+ +.+++ ++..|+.|+...++
T Consensus 273 ~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~--~~~l~--~~~~Gd~l~~~~~~ 330 (594)
T 1g7s_A 273 ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIV--APGID--DVMAGSPLRVVTDP 330 (594)
T ss_dssp EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEE--CSSCT--TBCTTCEEEECSSH
T ss_pred eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEE--EcccC--CCCCCCEEEecCCH
Confidence 4599999763 35677887 666655 45553 47899999987643
No 31
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=99.97 E-value=3e-31 Score=245.08 Aligned_cols=162 Identities=46% Similarity=0.778 Sum_probs=152.5
Q ss_pred CCCCceEEEEEEEccCCeEEEEEEEEeeEecCCeEEecCCCCeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCce
Q 011910 308 PNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 387 (475)
Q Consensus 308 ~~~~~~~~v~~~~~~~G~v~~g~v~~G~l~~gd~v~i~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (475)
.++||+|+|+++|++.|++++|+|.+|+|++||+|.+.|++..++|++|+++++++++|.|||+|+++|+|++..++++|
T Consensus 3 ~~~p~rl~v~~v~~g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~rG 82 (204)
T 3e1y_E 3 LGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPG 82 (204)
T ss_dssp ----CBEEEEEEEESSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCCTT
T ss_pred CCCCEEEEEEEEEcCCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCcccccEEEEEEEEeecccc-ccccCCcEEEEEEeeeeEEEEEEEeeeeccccCCcccccCceeeeCCCEEE
Q 011910 388 FVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 466 (475)
Q Consensus 388 ~vl~~~~~~~~~~~~f~A~i~~~~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~g~~~~~~p~~l~~g~~~~ 466 (475)
|+|++++++|+.++.|+|++.| |++ ++|..||++++|+|+.+++|+|.+|.+++|.+||++.+.+|++|++||.++
T Consensus 83 ~vl~~~~~~~~~~~~f~a~v~~---l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~ 159 (204)
T 3e1y_E 83 FILCDPNNLCHSGRTFDAQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCI 159 (204)
T ss_dssp CEEBCSSSCCCCCSEEEEEEEC---CSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEE
T ss_pred eEEECCCCCCchhEEEEEEEEE---eCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEE
Confidence 9999999988999999999999 666 579999999999999999999999999999999998888999999999999
Q ss_pred EEEEec
Q 011910 467 CRIQVC 472 (475)
Q Consensus 467 ~~~~l~ 472 (475)
|+|.|+
T Consensus 160 v~l~~~ 165 (204)
T 3e1y_E 160 ARLRTA 165 (204)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 999986
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.96 E-value=1.5e-28 Score=271.71 Aligned_cols=290 Identities=19% Similarity=0.257 Sum_probs=198.3
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
....++|+|+||+|||||||+++|++..+.+..... | ...++|....|+++|+|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~----------~-----~~~~~D~~~~E~~rgiTI~~~~~~~~~~ 80 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKA----------G-----EARFTDTRKDEQERGITIKSTAISLYSE 80 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEEE
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccC----------C-----CceeecCchhhhhcceeEeeceeEEEec
Confidence 456789999999999999999999998887654320 1 1346788899999999999887776664
Q ss_pred ----------------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCce
Q 011910 159 ----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 222 (475)
Q Consensus 159 ----------------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~ 222 (475)
++.++|||||||.+|...+.++++.+|++|+|||+.+|.. .|+..++..+...++|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~~p- 152 (842)
T 1n0u_A 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC-------VQTETVLRQALGERIK- 152 (842)
T ss_dssp CCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCE-
T ss_pred ccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-
Confidence 6889999999999999999999999999999999999964 5888888888888999
Q ss_pred EEEEEEccCCCCCC--ch----HHHHHHHHhhhhhHhhhhc--------CcccCCeeEEEeeccccccccc---------
Q 011910 223 LLLVVNKMDDHTVN--WS----KERYDEIESKMTPFLKASG--------YNVKKDVQFLPISGLMGLNMKT--------- 279 (475)
Q Consensus 223 iivviNKiD~~~~~--~~----~~~~~~i~~~l~~~l~~~~--------~~~~~~~~iipiSa~~g~gi~~--------- 279 (475)
+|+|+||+|+...+ ++ ...++.+.++++..+..+. +.+. ..++...|+++|+++.-
T Consensus 153 ~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~-~~~v~~~sa~~g~~~~~~~f~~~y~~ 231 (842)
T 1n0u_A 153 PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPA-RGTVAFGSGLHGWAFTIRQFATRYAK 231 (842)
T ss_dssp EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGG-GTCEEEEETTTTEEEEHHHHHHHHHT
T ss_pred eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceE-EeeeEEeecccccccchhhhhhhcch
Confidence 88999999984211 11 3346666666666664321 2211 22567789988866420
Q ss_pred cccc-----CCCCCC-----------------------------------------------------------------
Q 011910 280 RVDK-----SLCPWW----------------------------------------------------------------- 289 (475)
Q Consensus 280 l~~~-----~~~~w~----------------------------------------------------------------- 289 (475)
-+.. ....|.
T Consensus 232 ~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e 311 (842)
T 1n0u_A 232 KFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDE 311 (842)
T ss_dssp TTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGG
T ss_pred hcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHH
Confidence 0000 000110
Q ss_pred -----------------C-hhhHHH-HhhhcCCCC-------------------------CCCCCCceEEEEEEEc--cC
Q 011910 290 -----------------N-GPCLFE-ALDRIEITP-------------------------RDPNGPFRMPIIDKFK--DM 323 (475)
Q Consensus 290 -----------------~-g~~l~~-~l~~l~~~~-------------------------~~~~~~~~~~v~~~~~--~~ 323 (475)
. ...|++ +++.+|+|. ++.++||.+.|++++. ..
T Consensus 312 ~~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~ 391 (842)
T 1n0u_A 312 KDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDK 391 (842)
T ss_dssp GGCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSST
T ss_pred HhhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCC
Confidence 0 022333 334566653 2467899999999874 57
Q ss_pred Ce-EEEEEEEEeeEecCCeEEecCCC------C---eEEEEEEEEC----CccceeeCCCCEEEEEeccCCccCCCceeE
Q 011910 324 GT-VVMGKVESGSVREGDSLLVMPNK------A---QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (475)
Q Consensus 324 G~-v~~g~v~~G~l~~gd~v~i~p~~------~---~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (475)
|. +.++||+||+|+.||+|.+...+ . ..+|..|... ..++++|.||++|+ +.|++...++.| +
T Consensus 392 G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~a--i~gl~~~~~~t~-T 468 (842)
T 1n0u_A 392 GRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIG--LVGIDQFLLKTG-T 468 (842)
T ss_dssp TCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEE--EESCTTTCCSSE-E
T ss_pred CceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEE--EEccccceecce-e
Confidence 96 89999999999999999765332 2 4788888775 56899999999998 567755434556 8
Q ss_pred EecCCC
Q 011910 390 LSSVAK 395 (475)
Q Consensus 390 l~~~~~ 395 (475)
|++.+.
T Consensus 469 l~~~~~ 474 (842)
T 1n0u_A 469 LTTSET 474 (842)
T ss_dssp EESCTT
T ss_pred ecCCCC
Confidence 887543
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=1.6e-20 Score=168.57 Aligned_cols=158 Identities=28% Similarity=0.379 Sum_probs=111.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.++|+++|.+++|||||+++|+...- . .....+++.+.....+...+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV--T-----------------------------EQEAGGITQHIGAYQVTVND 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS--S-----------------------------CSSCCSSSTTCCCCEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc--c-----------------------------cCCCCceeEeeeEEEEEeCC
Confidence 4567999999999999999999943211 0 01113344444455667788
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchH
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~ 239 (475)
..+.|+||||+.+|...+...+..+|++|+|+|+..+.. .++.+.+..+...++| +++|+||+|+...+ .
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~--~ 124 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVM-------PQTVEAINHAKAANVP-IIVAINKMDKPEAN--P 124 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCC-------HHHHHHHHHHGGGSCC-EEEEEETTTSSCSC--H
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHhCCCC-EEEEEECccCCcCC--H
Confidence 899999999999998888888899999999999988753 4667777777667888 89999999995432 2
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+.......+...+....+ ..++++++||++|.|+.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 125 DRVMQELMEYNLVPEEWG----GDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp HHHHHHHTTTTCCBTTTT----SSEEEEECCSSSSHHHHHHHH
T ss_pred HHHHHHHHhcCcChhHcC----CcccEEEEecCCCCCHHHHHH
Confidence 222222222221111111 136899999999999999754
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=1.8e-19 Score=185.88 Aligned_cols=158 Identities=19% Similarity=0.293 Sum_probs=112.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++|+|||||+++|+...... .....|+|.+.....+.+.+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~ 222 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYNQ 222 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------EC---------CCEEEEETT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceeeeeEEEEEECC
Confidence 356899999999999999999996432211 11235778777777888899
Q ss_pred eeEEEEeCCCCcC----------cHHH-HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 160 TRFTILDAPGHKS----------YVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 160 ~~~~liDtPGh~~----------f~~~-~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
..+.||||||+.+ |... ...+++.+|++|+|+|+.++.+ .+..+++..+...+.| +|+|+|
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s-------~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEEE
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 9999999999843 3322 3356788999999999999865 4777788888888888 999999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+... ....++++.+++...+...+ .++++++||++|.|+.+++.
T Consensus 295 K~Dl~~~--~~~~~~~~~~~~~~~l~~~~-----~~~~~~~SA~tg~~v~~l~~ 341 (436)
T 2hjg_A 295 KWDAVDK--DESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 341 (436)
T ss_dssp CGGGSCC--CTTHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred CccCCCc--chHHHHHHHHHHHHhcccCC-----CCCEEEEecccCCCHHHHHH
Confidence 9999432 23334555555555554432 45899999999999999754
No 35
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.79 E-value=3.2e-19 Score=166.63 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=107.0
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe-e
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-T 157 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~ 157 (475)
....++|+++|+.|+|||||+++|+..... + ......|.|.......+. .
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~-----------------------~------~~~~~~~~t~~~~~~~~~~~ 76 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRL-----------------------A------FASKTPGRTQHINYFSVGPA 76 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSS-----------------------S------CTTCCCCSCCCEEEEEESCT
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcc-----------------------e------eecCCCCcccceEEEEecCC
Confidence 345679999999999999999999432210 0 001123445554444444 4
Q ss_pred CCeeEEEEeCCCCcC-------------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEE
Q 011910 158 ETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 224 (475)
Q Consensus 158 ~~~~~~liDtPGh~~-------------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~ii 224 (475)
.+..+.|+||||+.+ +....+.....+|++|+|+|+..+.. ......+..+...++| +|
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~l~~~~~p-~i 148 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-------ELDRRMIEWFAPTGKP-IH 148 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHGGGCCC-EE
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EE
Confidence 568899999999732 33344555566899999999998743 3556666777777888 99
Q ss_pred EEEEccCCCCCCchHHHHHHHHhhhhhHhhhh---cCcccCCeeEEEeeccccccccccc
Q 011910 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKAS---GYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 225 vviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~---~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+|+||+|+... .......+.+...+... +.. ...+++++||++|.|+.+++
T Consensus 149 ~v~nK~Dl~~~----~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~SA~~g~gv~~l~ 202 (223)
T 4dhe_A 149 SLLTKCDKLTR----QESINALRATQKSLDAYRDAGYA--GKLTVQLFSALKRTGLDDAH 202 (223)
T ss_dssp EEEECGGGSCH----HHHHHHHHHHHHHHHHHHHHTCC--SCEEEEEEBTTTTBSHHHHH
T ss_pred EEEeccccCCh----hhHHHHHHHHHHHHHhhhhcccC--CCCeEEEeecCCCcCHHHHH
Confidence 99999999432 23333344444444432 111 25689999999999999863
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=8.7e-19 Score=172.47 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=107.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
.+.-.|+++|++|+|||||+++|+.....+. ....+.|.......+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~------------------------------s~~~~tT~~~~~~~~~~~~ 57 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSII------------------------------SPKAGTTRMRVLGVKNIPN 57 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC------------------------------CSSSCCCCSCEEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCcccc------------------------------CCCCCceeeEEEEEEecCC
Confidence 4556899999999999999999964322110 112345555555556667
Q ss_pred CeeEEEEeCCCCcCcH----------HHHhhccccCCEEEEEEecCCCccccccCCCcchHHH-HHHHHHcCCceEEEEE
Q 011910 159 TTRFTILDAPGHKSYV----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKTLGVTKLLLVV 227 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~----------~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~-l~~~~~~~i~~iivvi 227 (475)
+.++.|+||||+.++. ..+..++..+|++|+|+|+..+.. .+.... +..+...++| +|+|+
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~-------~~~~~~~~~~l~~~~~p-vilV~ 129 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWR-------PRDEEIYQNFIKPLNKP-VIVVI 129 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHTGGGCCC-EEEEE
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-------chhHHHHHHHHHhcCCC-EEEEE
Confidence 8999999999996543 556667889999999999998753 355555 6666667888 89999
Q ss_pred EccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 228 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 228 NKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
||+|+.. + ........+.+.. .++ ...+++|+||++|.|+.++++
T Consensus 130 NK~Dl~~-~--~~~~~~~~~~l~~---~~~----~~~~i~~vSA~~g~gv~~L~~ 174 (308)
T 3iev_A 130 NKIDKIG-P--AKNVLPLIDEIHK---KHP----ELTEIVPISALKGANLDELVK 174 (308)
T ss_dssp ECGGGSS-S--GGGGHHHHHHHHH---HCT----TCCCEEECBTTTTBSHHHHHH
T ss_pred ECccCCC-C--HHHHHHHHHHHHH---hcc----CCCeEEEEeCCCCCCHHHHHH
Confidence 9999941 1 1222233333322 221 134799999999999998643
No 37
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.78 E-value=1.3e-18 Score=153.23 Aligned_cols=145 Identities=21% Similarity=0.292 Sum_probs=100.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|+.|+|||||+++|+...... .....+.|.+.....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------------------------VADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------------------------ccCCCCceecceEEEEEeCCceE
Confidence 689999999999999999995322110 01123455555556677788899
Q ss_pred EEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCC
Q 011910 163 TILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 163 ~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~ 235 (475)
.|+||||+.. +...+...+..+|++|+|+|+..+.. .........+...+.| +++|+||+|+...
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELT-------QADYEVAEYLRRKGKP-VILVATKVDDPKH 123 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCC-------HHHHHHHHHHHHHTCC-EEEEEECCCSGGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCccc-------HhHHHHHHHHHhcCCC-EEEEEECcccccc
Confidence 9999999987 34455566889999999999998742 2344555666667888 8999999999321
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.+++..+. ..++ .+++++||++|.|+.+++
T Consensus 124 ----------~~~~~~~~-~~~~-----~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 124 ----------ELYLGPLY-GLGF-----GDPIPTSSEHARGLEELL 153 (161)
T ss_dssp ----------GGGCGGGG-GGSS-----CSCEECBTTTTBSHHHHH
T ss_pred ----------hHhHHHHH-hCCC-----CCeEEEecccCCChHHHH
Confidence 12333333 3443 268999999999999863
No 38
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=2e-18 Score=169.16 Aligned_cols=149 Identities=18% Similarity=0.129 Sum_probs=101.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+...|+++|++|+|||||+++|+.....+.. + ..+.|.+.....+...+.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs------------------------~------~~~tTr~~i~~i~~~~~~ 55 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS------------------------P------RPQTTRKRLRGILTEGRR 55 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC------------------------S------SSCCCCSCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeec------------------------C------CCCceeEEEEEEEEeCCc
Confidence 4567999999999999999999643321110 0 012222222223456788
Q ss_pred eEEEEeCCCCcC--------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEcc
Q 011910 161 RFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKM 230 (475)
Q Consensus 161 ~~~liDtPGh~~--------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKi 230 (475)
+++|+||||+.+ |......+++.+|++|+|+|+..+.. ......+..+... +.| +|+|+||+
T Consensus 56 ~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~-------~~~~~i~~~l~~~~~~~p-~ilV~NK~ 127 (301)
T 1wf3_A 56 QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT-------PEDELVARALKPLVGKVP-ILLVGNKL 127 (301)
T ss_dssp EEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC-------HHHHHHHHHHGGGTTTSC-EEEEEECG
T ss_pred EEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCC-------hHHHHHHHHHHhhcCCCC-EEEEEECc
Confidence 999999999887 56666777899999999999998742 3455555566655 788 89999999
Q ss_pred CCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
|+.... .. +.+.+..+ .+ ..+++|+||++|.|+.+++
T Consensus 128 Dl~~~~--~~----~~~~~~~~---~~-----~~~~~~iSA~~g~gv~~l~ 164 (301)
T 1wf3_A 128 DAAKYP--EE----AMKAYHEL---LP-----EAEPRMLSALDERQVAELK 164 (301)
T ss_dssp GGCSSH--HH----HHHHHHHT---ST-----TSEEEECCTTCHHHHHHHH
T ss_pred ccCCch--HH----HHHHHHHh---cC-----cCcEEEEeCCCCCCHHHHH
Confidence 994321 10 22222222 12 2479999999999998864
No 39
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=6.9e-19 Score=182.60 Aligned_cols=158 Identities=19% Similarity=0.288 Sum_probs=118.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|++|+|||||+++|+...... .....|+|.+.....+...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 242 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYNQ 242 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECC------CTTSEEEEETT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccc------------------------------cCCCCCeEEEEEEEEEEECC
Confidence 456799999999999999999995332111 11225677777777788889
Q ss_pred eeEEEEeCCC----------CcCcHHH-HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 160 TRFTILDAPG----------HKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 160 ~~~~liDtPG----------h~~f~~~-~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
..++|||||| ++.|... ...++..||++|+|+|+.++.. .+..+++..+...+.| +|+|+|
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-------~~~~~~~~~~~~~~~~-~ilv~N 314 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIVVN 314 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEEE
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEEEE
Confidence 9999999999 5566443 3456789999999999999865 5888888888888988 999999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+.. .....++++.+.+...+...+ .++++++||++|.|+.+++.
T Consensus 315 K~Dl~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 315 KWDAVD--KDESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 361 (456)
T ss_dssp CGGGSC--CCSSHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred ChhcCC--CchHHHHHHHHHHHHhcccCC-----CCCEEEEcCCCCcCHHHHHH
Confidence 999943 334456666666666665543 35899999999999999754
No 40
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.77 E-value=3.3e-18 Score=153.45 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=100.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|++|+|||||+++|....- ... .....|. +.....+...+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--~~~---------------------------~~~t~~~--~~~~~~~~~~~ 52 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF--GKQ---------------------------YKQTIGL--DFFLRRITLPG 52 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT--THH---------------------------HHHTTTS--SEEEEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC--CCC---------------------------CCCceeE--EEEEEEEEeCC
Confidence 4568999999999999999999953221 100 0001121 22223344444
Q ss_pred ---eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-----cCCceEEEEEEccC
Q 011910 160 ---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMD 231 (475)
Q Consensus 160 ---~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-----~~i~~iivviNKiD 231 (475)
..+.|+||||+..|...+...++.+|++|+|+|+..+.. + ......+..+.. .+.|++++|+||+|
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---F---ENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred CCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 789999999999998888888899999999999987632 1 122333333333 26676789999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+.... .... ++...+.+..+ ++++++||++|.|+.+++.
T Consensus 127 l~~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 165 (178)
T 2hxs_A 127 LEHMR--TIKP----EKHLRFCQENG------FSSHFVSAKTGDSVFLCFQ 165 (178)
T ss_dssp GGGGC--SSCH----HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred ccccc--ccCH----HHHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Confidence 84311 1011 12233334433 4799999999999998643
No 41
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=154.58 Aligned_cols=153 Identities=17% Similarity=0.151 Sum_probs=102.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++|+|||||+++|+.... ..+....++.+.....+...+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTF-------------------------------SGSYITTIGVDFKIRTVEING 55 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----------------------------------CCTTTBSEEEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCccCCCceeEEEEEEEEECC
Confidence 4668999999999999999999832110 011123344444445555555
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~ 235 (475)
..+.|+||||+..|...+...+..+|++|+|+|+..+.. + ......+..+... ++| +|+|+||+|+...
T Consensus 56 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 56 EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES---F---VNVKRWLHEINQNCDDVC-RILVGNKNDDPER 128 (181)
T ss_dssp EEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHCTTSE-EEEEEECTTCGGG
T ss_pred EEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECCCCchh
Confidence 679999999999998888888899999999999987632 1 1223333333332 366 8999999998432
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ... .+...+....+ ++++++||++|.|+.+++.
T Consensus 129 ~~--~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 129 KV--VET----EDAYKFAGQMG------IQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp CC--SCH----HHHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred cc--cCH----HHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 11 111 12223333333 4799999999999998754
No 42
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=1.1e-18 Score=168.88 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=104.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+.++|+++|++|+|||||+++|...... .....|+|++.....+...+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~-------------------------------v~~~~g~t~~~~~~~~~~~~~ 50 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQR-------------------------------VGNWAGVTVERKEGQFSTTDH 50 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEE-------------------------------EEECTTSSSEEEEEEEECSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcc-------------------------------cCCCCCeeEEEEEEEEEeCCC
Confidence 3478999999999999999999432110 112257777777778888889
Q ss_pred eEEEEeCCCCcCcHHH--------H-h---hccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 161 RFTILDAPGHKSYVPN--------M-I---SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~--------~-~---~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
.+.|+||||+.+|... . . .....+|++|+|+|+... ......+..+...++| +|+|+|
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---------~~~~~~~~~l~~~~~p-~ivv~N 120 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---------ERNLYLTLQLLELGIP-CIVALN 120 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---------HHHHHHHHHHHHHTCC-EEEEEE
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHHHHHHHHHhcCCC-EEEEEE
Confidence 9999999999887521 1 1 123689999999999873 2455666677778999 999999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
|+|+.... .+...+..+.+.+| ++++++||++|.|+.+++
T Consensus 121 K~Dl~~~~-------~~~~~~~~l~~~lg------~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 121 MLDIAEKQ-------NIRIEIDALSARLG------CPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp CHHHHHHT-------TEEECHHHHHHHHT------SCEEECCCGGGHHHHHHH
T ss_pred Cccchhhh-------hHHHHHHHHHHhcC------CCEEEEEcCCCCCHHHHH
Confidence 99983211 11111222333333 489999999999999864
No 43
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=155.11 Aligned_cols=153 Identities=20% Similarity=0.181 Sum_probs=103.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|+.++|||||+++|+..... .+....++.+.....+...+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 62 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYT-------------------------------ESYISTIGVDFKIRTIELDG 62 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------SCCCCCSSEEEEEEEEEETT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CCCCCcccceEEEEEEEECC
Confidence 45689999999999999999999532110 11123334444444455555
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+..|...+...++.+|++|+|+|+..... + ......+..+... ++| +++|+||+|+..
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLTT 135 (196)
T ss_dssp EEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 679999999999998888888999999999999987532 1 1233344444333 667 899999999943
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ..... ....+.... .++++++||++|.|+.+++.
T Consensus 136 ~~--~~~~~----~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 136 KK--VVDYT----TAKEFADSL------GIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp TC--CSCHH----HHHHHHHHT------TCCEEEECTTTCTTHHHHHH
T ss_pred cc--ccCHH----HHHHHHHHc------CCcEEEEeCCCCCCHHHHHH
Confidence 22 11111 122233333 35799999999999999754
No 44
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.76 E-value=6.6e-18 Score=151.87 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=100.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|+.++|||||+++|+.... .. ......|.+.......+....
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQF--VE---------------------------FQESTIGAAFFSQTLAVNDAT 60 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCC--TT---------------------------TSCCCSCCSEEEEEEEETTEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC--CC---------------------------cCCCCceeEEEEEEEEECCEE
Confidence 4568999999999999999999953211 00 000112222222222222234
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+..|...+...++.+|++|+|+|+..+.. + ......+..+... ++| +++|+||+|+....
T Consensus 61 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKSDLLDAR 133 (181)
T ss_dssp EEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTC
T ss_pred EEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCcccccc
Confidence 689999999999998888888899999999999987532 1 1334444444443 566 89999999994321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+... +++..+++.. .++++++||++|.|+.+++
T Consensus 134 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 134 --KVTA----EDAQTYAQEN------GLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp --CSCH----HHHHHHHHHT------TCEEEECCSSSCTTHHHHH
T ss_pred --cCCH----HHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 1111 2233344443 3579999999999999863
No 45
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.76 E-value=9e-18 Score=153.51 Aligned_cols=155 Identities=19% Similarity=0.216 Sum_probs=103.6
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.....+|+++|+.++|||||+++|+...... .+ ...|+......+...
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-------------------------~~-------~~~t~~~~~~~~~~~ 61 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSS-------------------------KH-------ITATVGYNVETFEKG 61 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC-----------------------------C-------CCCCSSEEEEEEEET
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcc-------------------------cc-------cccccceeEEEEEeC
Confidence 4566899999999999999999983211100 00 111222333445678
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-----------CCceEEEEE
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----------GVTKLLLVV 227 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~-----------~i~~iivvi 227 (475)
...+.|+||||+.+|...+...++.+|++|+|+|+..+.. | ....+.+..+... ++| +|+|+
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~ 134 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR---L---CVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFA 134 (199)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEE
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH---H---HHHHHHHHHHHhChhhhhcccccCCCC-EEEEE
Confidence 8999999999999999888888999999999999997642 1 1333334333332 777 99999
Q ss_pred EccCCCCCCchHHHHHHHHhhhhhH--hhhhcCcccCCeeEEEeecccccccccccc
Q 011910 228 NKMDDHTVNWSKERYDEIESKMTPF--LKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 228 NKiD~~~~~~~~~~~~~i~~~l~~~--l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
||+|+.... ..+++.+.+... .+. ..++++++||++|.|+.++++
T Consensus 135 NK~Dl~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g~gv~~l~~ 181 (199)
T 4bas_A 135 NKMDAAGAK----TAAELVEILDLTTLMGD------HPFVIFASNGLKGTGVHEGFS 181 (199)
T ss_dssp ECTTSTTCC----CHHHHHHHHTHHHHHTT------SCEEEEECBTTTTBTHHHHHH
T ss_pred ECcCCCCCC----CHHHHHHHhcchhhccC------CeeEEEEeeCCCccCHHHHHH
Confidence 999995432 122333322211 121 256899999999999999754
No 46
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.75 E-value=1.2e-18 Score=166.92 Aligned_cols=145 Identities=21% Similarity=0.195 Sum_probs=102.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|++|+|||||+++|..... ......|+|++.....+...+..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-------------------------------~v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-------------------------------RVGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-------------------------------EEEECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-------------------------------CccCCCCceEEEEEEEEEECCeEE
Confidence 5899999999999999999943211 011225777777777888889999
Q ss_pred EEEeCCCCcCcHHH---------Hh-hcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEcc
Q 011910 163 TILDAPGHKSYVPN---------MI-SGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (475)
Q Consensus 163 ~liDtPGh~~f~~~---------~~-~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKi 230 (475)
.|+||||+.+|... +. ..+ ..+|++|+|+|+... .........+..+++| +|+|+||+
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---------~~~~~l~~~l~~~~~p-vilv~NK~ 120 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---------ERHLYLTSQLFELGKP-VVVALNMM 120 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---------HHHHHHHHHHTTSCSC-EEEEEECH
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---------hhHHHHHHHHHHcCCC-EEEEEECh
Confidence 99999999887542 11 223 689999999999863 2445555666677898 99999999
Q ss_pred CCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
|+.... .+...+..+.+.+| ++++++||++|.|+.+++
T Consensus 121 Dl~~~~-------~~~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 121 DIAEHR-------GISIDTEKLESLLG------CSVIPIQAHKNIGIPALQ 158 (256)
T ss_dssp HHHHHT-------TCEECHHHHHHHHC------SCEEECBGGGTBSHHHHH
T ss_pred hcCCcC-------CcHHHHHHHHHHcC------CCEEEEECCCCCCHHHHH
Confidence 983211 11111222223333 489999999999999863
No 47
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.75 E-value=5e-18 Score=150.62 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=101.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|+.++|||||+++|+... ... ......|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQ--FHE---------------------------FQESTIGAAFLTQTVCLDDTT 54 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSC--CCT---------------------------TCCCCSSEEEEEEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCC--CCC---------------------------CCCCccceEEEEEEEEECCEE
Confidence 456799999999999999999995321 100 001123344433333344446
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+.+|...+...+..+|++|+|+|+..+.. + ......+..+... ++| +++|.||+|+....
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES---F---ARAKNWVKELQRQASPNIV-IALSGNKADLANKR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGC
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc
Confidence 789999999999998888888899999999999987532 1 1233344444433 566 88899999984211
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.... +++..++... .++++++||++|.|+.++
T Consensus 128 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 128 --AVDF----QEAQSYADDN------SLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp --CSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred --ccCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHH
Confidence 1111 1222333333 358999999999999986
No 48
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=155.20 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=102.6
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+..+|+++|+.|+|||||+++|+....... ....|+......+...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~ 65 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ--------------------------------NILPTIGFSIEKFKSS 65 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCS--------------------------------SCCCCSSEEEEEEECS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCC--------------------------------CcCCccceeEEEEEEC
Confidence 34568999999999999999999843211000 0112333334456667
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH------cCCceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~------~~i~~iivviNKiD~ 232 (475)
+..+.|+||||+..|...+...+..+|++|+|+|+..... | ......+..+.. .++| +++|+||+|+
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 138 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR---M---VVAKEELDTLLNHPDIKHRRIP-ILFFANKMDL 138 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhccCCCe-EEEEEeCcCc
Confidence 8999999999999998888888999999999999987531 1 123334433333 3677 9999999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... ..+++.+. +....+. ...++++++||++|.|+.++++
T Consensus 139 ~~~~----~~~~~~~~----~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 179 (190)
T 2h57_A 139 RDAV----TSVKVSQL----LCLENIK-DKPWHICASDAIKGEGLQEGVD 179 (190)
T ss_dssp TTCC----CHHHHHHH----HTGGGCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred ccCC----CHHHHHHH----hChhhcc-CCceEEEEccCCCCcCHHHHHH
Confidence 5321 12223222 2111111 1256899999999999998643
No 49
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.75 E-value=1.7e-17 Score=148.68 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=99.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|++|+|||||+++|+.... . .+....++.......+...+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 53 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKF--D-----------------------------TQLFHTIGVEFLNKDLEVDG 53 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC--C-----------------------------C----CCSEEEEEEEEEETT
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCC--C-----------------------------CCCCCceeeeEEEEEEEECC
Confidence 4568999999999999999999953211 0 00111222222233444444
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-------cCCceEEEEEEcc
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNKM 230 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-------~~i~~iivviNKi 230 (475)
..+.|+||||+..|...+...+..+|++++|+|+..+... ......+..+.. .++| +++|+||+
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~ 126 (177)
T 1wms_A 54 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSF------QNLSNWKKEFIYYADVKEPESFP-FVILGNKI 126 (177)
T ss_dssp EEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHHTCSCTTTSC-EEEEEECT
T ss_pred EEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHH------HHHHHHHHHHHHHccccccCCCc-EEEEEECC
Confidence 5799999999999998888889999999999999876421 112222222222 4667 89999999
Q ss_pred CCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+....... + ++..+++.. ..++++++||++|.|+.+++.
T Consensus 127 Dl~~~~~~~---~----~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 166 (177)
T 1wms_A 127 DISERQVST---E----EAQAWCRDN-----GDYPYFETSAKDATNVAAAFE 166 (177)
T ss_dssp TCSSCSSCH---H----HHHHHHHHT-----TCCCEEECCTTTCTTHHHHHH
T ss_pred cccccccCH---H----HHHHHHHhc-----CCceEEEEeCCCCCCHHHHHH
Confidence 995222121 1 222233321 145899999999999998643
No 50
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=6.9e-18 Score=153.13 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=98.9
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+..+|+++|+.|+|||||+++|+..... ....|+......+...
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 58 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV----------------------------------HTSPTIGSNVEEIVIN 58 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE----------------------------------EEECCSCSSCEEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC----------------------------------cCcCCCccceEEEEEC
Confidence 356689999999999999999999421110 0111222333455667
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~ 234 (475)
+..+.|+||||+.+|...+...+..+|++|+|+|+..+.. | ....+.+..+.. .+.| +++|+||+|+..
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 131 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANKQDVKE 131 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhchhhCCCe-EEEEEECCCCcC
Confidence 8999999999999998888788899999999999987631 1 133334433333 3666 999999999953
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. ..+++.+.+. ...+. ...++++++||++|.|+.+++
T Consensus 132 ~~----~~~~i~~~~~----~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 132 CM----TVAEISQFLK----LTSIK-DHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp CC----CHHHHHHHHT----GGGCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred CC----CHHHHHHHhC----hhhhc-CCCcEEEEccCCCCcCHHHHH
Confidence 21 1222322221 11111 125689999999999999863
No 51
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=6.4e-18 Score=154.20 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=103.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|..++|||||+++|+.... .. ......|.+.......+....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHF--DH---------------------------NISPTIGASFMTKTVPCGNEL 71 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCC--CT---------------------------TCCCCSSEEEEEEEEECSSSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCC--CC---------------------------CcCCCcceeEEEEEEEeCCEE
Confidence 4568999999999999999999953211 00 001123444444444444456
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+.+|...+...+..+|++|+|+|+..... + ......+..+... ++| +++|+||+|+...
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~- 143 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS---F---YTLKKWVKELKEHGPENIV-MAIAGNKCDLSDI- 143 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG-
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECcccccc-
Confidence 789999999999998888888899999999999987642 1 1233444444443 566 9999999998421
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.+... +++..+++.. .++++++||++|.|+.++
T Consensus 144 -~~v~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 144 -REVPL----KDAKEYAESI------GAIVVETSAKNAINIEEL 176 (192)
T ss_dssp -CCSCH----HHHHHHHHTT------TCEEEECBTTTTBSHHHH
T ss_pred -cccCH----HHHHHHHHHc------CCEEEEEeCCCCcCHHHH
Confidence 11111 2233344443 358999999999999986
No 52
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.75 E-value=4.7e-18 Score=150.93 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=97.8
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--C
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 159 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 159 (475)
.++|+++|++++|||||+++|+.... .. .....++.+.....+... .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF--NP-----------------------------SFITTIGIDFKIKTVDINGKK 51 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC--CC------------------------------------CCEEEEEEESSSCE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC--CC-----------------------------CCCCccceeEEEEEEEECCEE
Confidence 47899999999999999999953211 00 001112222222334444 3
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+..|...+...+..+|++|+|+|+..+.. + ......+..+... +.| +++|+||+|+....
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 124 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT---F---TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV 124 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCC
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCc
Confidence 578999999999998877788889999999999987532 1 1233444444433 566 89999999984322
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
...+ +...+.+..+ ++++++||++|.|+.+++.
T Consensus 125 ~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 125 VTAD-------QGEALAKELG------IPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp SCHH-------HHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred cCHH-------HHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 2211 2223334443 4799999999999998643
No 53
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=159.65 Aligned_cols=164 Identities=17% Similarity=0.090 Sum_probs=97.0
Q ss_pred ccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEE
Q 011910 76 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 155 (475)
Q Consensus 76 ~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 155 (475)
.....+..+|+++|+.++|||||+++|+.... ... .....|.+.......+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~---------------------------~~~t~~~~~~~~~~~~ 72 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEF--REN---------------------------ISATLGVDFQMKTLIV 72 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCC--C-------------------------------------CEEEEEEE
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCC--Ccc---------------------------CCCCccceeEEEEEEE
Confidence 34456678999999999999999999953211 100 0001222222222333
Q ss_pred eeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCC
Q 011910 156 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDD 232 (475)
Q Consensus 156 ~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~ 232 (475)
......+.|+||||+.+|...+...+..+|++|+|+|+..+... ......+..+.. .++| +++|+||+|+
T Consensus 73 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 145 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF------LNIREWVDMIEDAAHETVP-IMLVGNKADI 145 (199)
T ss_dssp TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHH------HTHHHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHH------HHHHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 33346799999999999998888889999999999999876431 122333333333 3677 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
......+.......+....+.+.. .++++++||++|.|+.+++
T Consensus 146 ~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~SA~~g~gv~el~ 188 (199)
T 2p5s_A 146 RDTAATEGQKCVPGHFGEKLAMTY------GALFCETSAKDGSNIVEAV 188 (199)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHH------TCEEEECCTTTCTTHHHHH
T ss_pred ccccccccccccCHHHHHHHHHHc------CCeEEEeeCCCCCCHHHHH
Confidence 311000000000011222333333 3489999999999999864
No 54
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.75 E-value=9.5e-18 Score=150.26 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=99.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|+.++|||||+++|+..... ......++.+.....+...+
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFD-------------------------------NTYQATIGIDFLSKTMYLED 60 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCCSEEEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCceeeEEEEEEEEECC
Confidence 45589999999999999999999532110 01112233333333444444
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+..|...+...+..+|++|+|+|+..... + ......+..+.. .++| +++|+||+|+..
T Consensus 61 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 133 (179)
T 2y8e_A 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS---F---HQTSKWIDDVRTERGSDVI-IMLVGNKTDLSD 133 (179)
T ss_dssp EEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHTTSSE-EEEEEECGGGGG
T ss_pred eEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCcccc
Confidence 579999999999998888888899999999999987532 1 123333333332 3677 899999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.. +...+ +...+++.. .++++++||++|.|+.++
T Consensus 134 ~~--~~~~~----~~~~~~~~~------~~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 134 KR--QVSTE----EGERKAKEL------NVMFIETSAKAGYNVKQL 167 (179)
T ss_dssp GC--CSCHH----HHHHHHHHH------TCEEEEEBTTTTBSHHHH
T ss_pred cC--cCCHH----HHHHHHHHc------CCeEEEEeCCCCCCHHHH
Confidence 21 11111 222233333 358999999999999985
No 55
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.75 E-value=3.8e-18 Score=153.98 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=78.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|++|+|||||+++|...... .+....++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 54 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN-------------------------------STFISTIGIDFKIRTIELDG 54 (183)
T ss_dssp SEEEEEEEECCCCC-----------------------------------------------CHHHHHCEEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCcccceeEEEEEEECC
Confidence 35689999999999999999998532110 00112223333333444455
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+.+|...+...++.+|++|+|+|+..... | ......+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (183)
T 2fu5_C 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---F---DNIRNWIRNIEEHASADVE-KMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEEC--CCS
T ss_pred EEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccCCc
Confidence 789999999999998877778889999999999987532 1 1333444444443 567 899999999943
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. .... +++..+++..+ ++++++||++|.|+.+++.
T Consensus 128 ~~--~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 128 KR--QVSK----ERGEKLALDYG------IKFMETSAKANINVENAFF 163 (183)
T ss_dssp CC--CSCH----HHHHHHHHHHT------CEEEECCC---CCHHHHHH
T ss_pred cC--cCCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 21 1011 12233444443 4799999999999998754
No 56
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=6.1e-18 Score=152.94 Aligned_cols=153 Identities=19% Similarity=0.203 Sum_probs=101.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|+.++|||||+++|+..... ......++.+.....+...+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 56 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK-------------------------------DDSNHTIGVEFGSKIINVGG 56 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC-------------------------------TTCCCCSEEEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCccceEEEEEEEEECC
Confidence 45689999999999999999999532110 01112233333334444454
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+.+|...+...+..+|++|+|+|+..+... ......+..+.. .++| +++|+||+|+..
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 129 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY------NALTNWLTDARMLASQNIV-IILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHH------HHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 6799999999999999888889999999999999876421 122233333332 4667 999999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ..... +...+++.. .++++++||++|.|+.+++.
T Consensus 130 ~~--~~~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 130 DR--EVTFL----EASRFAQEN------ELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp GC--CSCHH----HHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred cc--ccCHH----HHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 11 11111 222333333 35899999999999998754
No 57
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.75 E-value=2.8e-18 Score=164.56 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=104.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.++|+++|++|+|||||+++|...... .....|+|+......+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-------------------------------~~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-------------------------------VANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-------------------------------EEECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCceEEEEEEEEEECC
Confidence 34578999999999999999999432110 11125778877777788888
Q ss_pred eeEEEEeCCCCcCcHHH-----H-hhcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 160 TRFTILDAPGHKSYVPN-----M-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~-----~-~~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
..+.|+||||+..|... + ...+ ..+|++++|+|++... .....+..+..+++| +|+|+||+|
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---------~~~~~~~~l~~~~~p-vilv~NK~D 121 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---------QSLYLLLEILEMEKK-VILAMTAID 121 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---------HHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---------hHHHHHHHHHhcCCC-EEEEEECcC
Confidence 99999999999887531 1 1112 5799999999998742 334455566667899 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+.... .+...+..+.+.+| ++++++||++|.|+.+++.
T Consensus 122 l~~~~-------~i~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 122 EAKKT-------GMKIDRYELQKHLG------IPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp HHHHT-------TCCBCHHHHHHHHC------SCEEECCTTTCTTHHHHHH
T ss_pred CCCcc-------chHHHHHHHHHHcC------CCEEEEEeeCCcCHHHHHH
Confidence 82110 11112333444443 4899999999999998654
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.75 E-value=1e-17 Score=153.25 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=72.8
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cCCceEEEEEEccCCCCCCch
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~i~~iivviNKiD~~~~~~~ 238 (475)
..+.|+||||+..|...+...++.+|++|+|+|+..+... ......+..+.. .+.| +++|+||+|+....
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~------~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~-- 163 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTL------DRAKTWVNQLKISSNYI-IILVANKIDKNKFQ-- 163 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCCE-EEEEEECTTCC-CC--
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHH------HHHHHHHHHHHhhCCCc-EEEEEECCCccccc--
Confidence 7899999999999998888889999999999999886431 122333433433 4555 99999999942111
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... +++..+++.. .++++++||++|.|+.+++.
T Consensus 164 -~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~ 196 (208)
T 3clv_A 164 -VDI----LEVQKYAQDN------NLLFIQTSAKTGTNIKNIFY 196 (208)
T ss_dssp -SCH----HHHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred -CCH----HHHHHHHHHc------CCcEEEEecCCCCCHHHHHH
Confidence 112 2233344443 35899999999999998754
No 59
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=1.7e-17 Score=147.68 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=101.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|+.++|||||+++|.... .. . ...|+......+.+.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~ 50 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGE--VV-------------------------T-------TIPTIGFNVETVTYKN 50 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSS--CC-------------------------C-------CCCCSSEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--CC-------------------------C-------cCCcCccceEEEEECC
Confidence 345799999999999999999984211 00 0 1112223334556678
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..+.|+||||+.+|...+...++.+|++|+|+|+..+.. | ....+.+..+.. .+.| +++|+||+|+...
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR---I---GISKSELVAMLEEEELRKAI-LVVFANKQDMEQA 123 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCC
Confidence 999999999999998888888899999999999987631 1 122333333322 3677 9999999999533
Q ss_pred CchHHHHHHHHhhhhh-HhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTP-FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~-~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ..+++...+.. .++ ...++++++||++|.|+.+++.
T Consensus 124 ~----~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~~ 161 (171)
T 1upt_A 124 M----TSSEMANSLGLPALK------DRKWQIFKTSATKGTGLDEAME 161 (171)
T ss_dssp C----CHHHHHHHHTGGGCT------TSCEEEEECCTTTCTTHHHHHH
T ss_pred C----CHHHHHHHhCchhcc------CCceEEEECcCCCCcCHHHHHH
Confidence 1 11223322211 111 1256899999999999998643
No 60
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=6.8e-18 Score=156.14 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=100.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++++|||||+++|+.... . .+....++.+.....+...+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 66 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF--N-----------------------------PSFITTIGIDFKIKTVDING 66 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC--C-----------------------------CSSSCCCSCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC--C-----------------------------cccCCcccceEEEEEEEECC
Confidence 4568999999999999999999953211 0 00112222333333445555
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+..|...+...+..+|++|+|+|+..+.. + ......+..+... ++| +++|+||+|+..
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 139 (213)
T 3cph_A 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---F---TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMET 139 (213)
T ss_dssp EEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTTTCSE-EEEEEECTTCSS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 679999999999998877788899999999999987532 1 1233444444433 566 899999999843
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.....+ +...+.+..+ ++++++||++|.|+.+++.
T Consensus 140 ~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 140 RVVTAD-------QGEALAKELG------IPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp CCSCHH-------HHHHHHHHHT------CCEEECBTTTTBSSHHHHH
T ss_pred cccCHH-------HHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 222211 2223333333 4799999999999999754
No 61
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=4.7e-18 Score=166.66 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=101.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+...|+|+|++|+|||||+++|++....+. .+ ..+.|.......+...+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~------------------------s~------~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISIT------------------------SR------KAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEEC------------------------CC------CSSCCSSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCcccc------------------------CC------CCCcceeeEEEEEEECC
Confidence 3456899999999999999999965422110 00 01222222222355678
Q ss_pred eeEEEEeCCCCc-C--------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEcc
Q 011910 160 TRFTILDAPGHK-S--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (475)
Q Consensus 160 ~~~~liDtPGh~-~--------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKi 230 (475)
..++|+||||+. . |......++..+|++++|+|+.. .. .+++..+..+...+.| +|+|+||+
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~-------~~~~~i~~~l~~~~~P-~ilvlNK~ 126 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT-------PDDEMVLNKLREGKAP-VILAVNKV 126 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC-------HHHHHHHHHHHSSSSC-EEEEEEST
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-------HHHHHHHHHHHhcCCC-EEEEEECc
Confidence 899999999997 3 33334566789999999999976 32 4666666666666888 88999999
Q ss_pred CCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+.. ....+ .+.+..+.+.+++ ..++|+||++|.|+.++.+
T Consensus 127 D~~~---~~~~~---~~~l~~l~~~~~~-----~~~i~iSA~~g~~v~~l~~ 167 (301)
T 1ega_A 127 DNVQ---EKADL---LPHLQFLASQMNF-----LDIVPISAETGLNVDTIAA 167 (301)
T ss_dssp TTCC---CHHHH---HHHHHHHHTTSCC-----SEEEECCTTTTTTHHHHHH
T ss_pred ccCc---cHHHH---HHHHHHHHHhcCc-----CceEEEECCCCCCHHHHHH
Confidence 9943 12222 2333333333333 2799999999999998643
No 62
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.74 E-value=8.1e-18 Score=152.93 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=103.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|+.++|||||+++|+..... . ......|.+.......+....
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~---------------------------~~~~t~~~~~~~~~~~~~~~~ 70 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFT--P---------------------------AFVSTVGIDFKVKTVYRHDKR 70 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC--C---------------------------SCCCCCCCEEEEEEEEETTEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC--C---------------------------CcCCceeEEEEEEEEEECCeE
Confidence 45689999999999999999998532110 0 000112334433333333345
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+.+|...+...+..+|++|+|+|+..+.. + ......+..+... +.| +++|+||+|+....
T Consensus 71 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES---F---AAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDER 143 (189)
T ss_dssp EEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC
T ss_pred EEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccccccc
Confidence 689999999999998888888999999999999987532 1 1334444555543 566 99999999984211
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .+++..+.+..+ ++++++||++|.|+.+++.
T Consensus 144 --~~~----~~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 144 --VVP----AEDGRRLADDLG------FEFFEASAKENINVKQVFE 177 (189)
T ss_dssp --CSC----HHHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred --CCC----HHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 101 122333444443 4799999999999998754
No 63
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=3.6e-18 Score=153.07 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=101.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|+.++|||||+++|+....... .....+.+.......+....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~ 63 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD-----------------------------CPHTIGVEFGTRIIEVSGQK 63 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------------------------CTTSCCCCEEEEEEEETTEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCCccceEEEEEEEEECCeE
Confidence 4568999999999999999999953221000 00112333333333333334
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+.+|...+...+..+|++|+|+|+..+... ......+..+.. .+.| +++|+||+|+...
T Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 135 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY------NHLSSWLTDARNLTNPNTV-IILIGNKADLEAQ- 135 (179)
T ss_dssp EEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG-
T ss_pred EEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHH------HHHHHHHHHHHHhcCCCCc-EEEEEECcccccc-
Confidence 6799999999999988888889999999999999876431 122333333333 4666 8999999999421
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..... +++..+++.. .++++++||++|.|+.+++
T Consensus 136 -~~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 136 -RDVTY----EEAKQFAEEN------GLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp -CCSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred -cccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 11111 2233344443 3589999999999999864
No 64
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1.2e-17 Score=148.13 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=99.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+..+|+++|+.|+|||||+++|+.... .. ......|.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDF--AE---------------------------NKEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CT---------------------------TCCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------CCCCccceeEEEEEEEECCEEE
Confidence 357899999999999999999953211 00 0001123333333333333345
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCCc
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~~ 237 (475)
.+.|+||||+..|...+...++.+|++|+|+|+..+... ......+..+.. .++| +++|+||+|+.....
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSF------IKARHWVKELHEQASKDII-IALVGNKIDXLQEGG 125 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSC
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHH------HHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccc
Confidence 799999999999988888888999999999999876321 122333333333 2566 899999999843211
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.... ..+....+.+.. .++++++||++|.|+.++
T Consensus 126 ~~~v---~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 126 ERKV---AREEGEKLAEEK------GLLFFETSAKTGENVNDV 159 (170)
T ss_dssp CCCS---CHHHHHHHHHHH------TCEEEECCTTTCTTHHHH
T ss_pred ccCC---CHHHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 0111 011122233333 348999999999999985
No 65
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.1e-17 Score=150.33 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=93.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|++++|||||+++|+...... ......++.+.....+...+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~ 57 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA------------------------------GTFISTVGIDFRNKVLDVDG 57 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC------------------------------CCCCCCCSCEEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC------------------------------CCcCCceeeEEEEEEEEECC
Confidence 466899999999999999999985322100 00011222222223333444
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+..|...+...+..+|++|+|+|+..+... ......+..+.. .++| +++|+||+|+..
T Consensus 58 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 130 (180)
T 2g6b_A 58 VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF------DNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAH 130 (180)
T ss_dssp EEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSCTTCE-EEEEEECCSTTS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCCc-EEEEEECcccCc
Confidence 5799999999999988888889999999999999876421 122333444433 4567 999999999953
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. .... ++...+.+..+ ++++++||++|.|+.+++.
T Consensus 131 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 131 ER--VVKR----EDGEKLAKEYG------LPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp CC--CSCH----HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 21 1111 12223333333 4799999999999998643
No 66
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.74 E-value=3.8e-18 Score=164.80 Aligned_cols=148 Identities=20% Similarity=0.195 Sum_probs=104.6
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+.++|+++|++|+|||||+++|..... ......|+|++.....+.+.+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 50 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-------------------------------HVGNWPGVTVEKKEGIMEYREK 50 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-------------------------------EEEECTTSSCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeEEEeeEEEEEECCc
Confidence 457999999999999999999943211 1112356777777778888999
Q ss_pred eEEEEeCCCCcCcHHH------Hhhc--cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC-CceEEEEEEccC
Q 011910 161 RFTILDAPGHKSYVPN------MISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMD 231 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~------~~~~--~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~-i~~iivviNKiD 231 (475)
.+.|+||||+.+|... .... ...+|++|+|+|+..+. .....+..+...+ .| +++|+||+|
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---------~~~~~~~~~~~~~~~p-~ilv~NK~D 120 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---------RNLFLTLELFEMEVKN-IILVLNKFD 120 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---------HHHHHHHHHHHTTCCS-EEEEEECHH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---------hhHHHHHHHHhcCCCC-EEEEEEChh
Confidence 9999999999887542 1111 25799999999998752 4555566666777 88 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+... ..+......+.+.+| ++++|+||++|.|+.+++.
T Consensus 121 l~~~-------~~~~~~~~~l~~~lg------~~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 121 LLKK-------KGAKIDIKKMRKELG------VPVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp HHHH-------HTCCCCHHHHHHHHS------SCEEECBGGGTBTHHHHHH
T ss_pred cCcc-------cccHHHHHHHHHHcC------CcEEEEEeCCCCCHHHHHH
Confidence 7211 011111222333333 4799999999999998643
No 67
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.74 E-value=5.2e-18 Score=154.65 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=102.7
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.....+|+++|++|+|||||+++|+....... .....|.+.......+...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 72 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-----------------------------SRTTIGVEFSTRTVMLGTA 72 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSSEEEEEEEEEETTE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEEEEEEEECCE
Confidence 45668999999999999999999954221100 0011233333333333334
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~ 235 (475)
...+.|+||||+.+|...+...++.+|++|+|+|+..+.. + ......+..+... ++| +++|+||+|+...
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~ 145 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---Y---AVVERWLKELYDHAEATIV-VMLVGNKSDLSQA 145 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECCCcccc
Confidence 5779999999999998888888899999999999987532 1 1233344444332 566 8999999999432
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. .... .++..+++.. .++++++||++|.|+.+++.
T Consensus 146 ~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 146 R--EVPT----EEARMFAENN------GLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp C--CSCH----HHHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred c--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 1111 1223333333 35899999999999998754
No 68
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=1.6e-17 Score=151.04 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=102.9
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++..+|+++|+.|+|||||+++|+...- .. ....|+......+...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~-------------------------------~~~~t~~~~~~~~~~~ 65 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQF--NE-------------------------------DMIPTVGFNMRKITKG 65 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCC--CC-------------------------------SCCCCCSEEEEEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCC--CC-------------------------------ccCCCCceeEEEEEeC
Confidence 45668999999999999999999943211 00 0112222333346677
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~ 234 (475)
+..+.|+||||+.+|...+...++.+|++|+|+|+..... + ......+..+.. .++| +++|+||+|+..
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 138 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK---I---EASKNELHNLLDKPQLQGIP-VLVLGNKRDLPG 138 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCC-EEEEEECCCCcc
Confidence 8999999999999998888888899999999999986531 1 123333333322 4677 999999999953
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. ..+++.+.+.... +. ...++++++||++|.|+.+++
T Consensus 139 ~~----~~~~~~~~~~~~~----~~-~~~~~~~~~SA~~g~gv~~l~ 176 (188)
T 1zd9_A 139 AL----DEKELIEKMNLSA----IQ-DREICCYSISCKEKDNIDITL 176 (188)
T ss_dssp CC----CHHHHHHHTTGGG----CC-SSCEEEEECCTTTCTTHHHHH
T ss_pred CC----CHHHHHHHhChhh----hc-cCCeeEEEEECCCCCCHHHHH
Confidence 21 1122322222111 11 135689999999999999863
No 69
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=153.11 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=100.8
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.....+|+++|+.++|||||+++|+... ... +....++.+.....+...
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~ 74 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGA--FSE-----------------------------RQGSTIGVDFTMKTLEIQ 74 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSC--C---------------------------------------CEEEEEEEET
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCC--CCC-----------------------------CCCCCcceEEEEEEEEEC
Confidence 3556899999999999999999984321 110 000111222223344444
Q ss_pred C--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCC
Q 011910 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 233 (475)
Q Consensus 159 ~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~ 233 (475)
+ ..+.|+||||+.+|...+...++.+|++|+|+|+..... | ......+..+.. .++| +++|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~ 147 (201)
T 2hup_A 75 GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---F---LSVPHWIEDVRKYAGSNIV-QLLIGNKSDLS 147 (201)
T ss_dssp TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCccc
Confidence 4 589999999999999888888999999999999987532 1 123344444443 3566 89999999994
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .... +++..+++..++. +++++||++|.|+.+++.
T Consensus 148 ~~~--~v~~----~~~~~~~~~~~~~-----~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 148 ELR--EVSL----AEAQSLAEHYDIL-----CAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp GGC--CSCH----HHHHHHHHHTTCS-----EEEECBTTTTBSHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHcCCC-----EEEEEeCCCCCCHHHHHH
Confidence 311 1111 2233344444331 799999999999998744
No 70
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.74 E-value=1.6e-17 Score=150.72 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=100.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee-eeEEeeC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETE 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~-~~~~~~~ 158 (475)
...++|+++|++|+|||||+++|+.... .. +....+..+.. ...+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~ 57 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKF--NS-----------------------------KFITTVGIDFREKRVVYRA 57 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC--CC-----------------------------SCCCCCSEEEEEEEEEECT
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCC--Cc-----------------------------CcccccceeeeeEEEEEec
Confidence 4568999999999999999999953211 00 00011111111 1122223
Q ss_pred -----------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceE
Q 011910 159 -----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKL 223 (475)
Q Consensus 159 -----------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~i 223 (475)
...+.|+||||+..|...+...++.+|++|+|+|+..+... ......+..+.. .++| +
T Consensus 58 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p-i 130 (195)
T 3bc1_A 58 NGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSF------LNVRNWISQLQMHAYSENPD-I 130 (195)
T ss_dssp TSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSSSSSCC-E
T ss_pred CCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCC-E
Confidence 45899999999999999888899999999999999876431 123344444433 4677 9
Q ss_pred EEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 224 ivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
++|+||+|+.... ... .+++..++...+ ++++++||++|.|+.+++.
T Consensus 131 ilv~nK~Dl~~~~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 177 (195)
T 3bc1_A 131 VLCGNKSDLEDQR--AVK----EEEARELAEKYG------IPYFETSAANGTNISHAIE 177 (195)
T ss_dssp EEEEECTTCGGGC--CSC----HHHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred EEEEECccccccc--ccC----HHHHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 9999999984311 101 122333444443 4799999999999998754
No 71
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=151.99 Aligned_cols=154 Identities=19% Similarity=0.141 Sum_probs=99.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|+.|+|||||+++|+..... ......++.+.....+...+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 72 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC-------------------------------EACKSTVGVDFKIKTVELRG 72 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------------------------------------CCTTEEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------cCCCCccceeEEEEEEEECC
Confidence 45689999999999999999998422110 00011122222233344444
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+.+|...+...++.+|++|+|+|+..+... ......+..+... ++| +++|+||+|+..
T Consensus 73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~------~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~ 145 (192)
T 2il1_A 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETF------DDLPKWMKMIDKYASEDAE-LLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHH------HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred eEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 5799999999999998888888999999999999876431 1223333444433 566 999999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. +...+ ++..+.+.. ...+++++||++|.|+.+++.
T Consensus 146 ~~--~v~~~----~~~~~~~~~-----~~~~~~~~SA~~g~gi~~l~~ 182 (192)
T 2il1_A 146 DR--EITRQ----QGEKFAQQI-----TGMRFCEASAKDNFNVDEIFL 182 (192)
T ss_dssp GC--CSCHH----HHHHHHHTS-----TTCEEEECBTTTTBSHHHHHH
T ss_pred cc--ccCHH----HHHHHHHhc-----CCCeEEEEeCCCCCCHHHHHH
Confidence 11 11111 122233322 145899999999999998643
No 72
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.73 E-value=7.5e-18 Score=153.53 Aligned_cols=160 Identities=17% Similarity=0.151 Sum_probs=99.5
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeee-----
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA----- 153 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~----- 153 (475)
.....+|+++|++|+|||||++.|.. ...... .+ ...........|+.....
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~---~~~~~~----------~~----------~~~~~~~~~~~t~~~~~~~~~~~ 67 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYS---KVPEGR----------KG----------EMVSLATEDERTLFFDFLPLDIG 67 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHH---TSCGGG----------BC----------CCEEEECSSCEEEEEEECCSSCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHh---hccccc----------cc----------cccccccccccceeeeecccccc
Confidence 35668999999999999999965521 111000 00 000000001123222211
Q ss_pred EEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHH----HH-----cCCceEE
Q 011910 154 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KT-----LGVTKLL 224 (475)
Q Consensus 154 ~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~----~~-----~~i~~ii 224 (475)
.+......+.|+||||+.+|...+...++.+|++|+|+|+..+... +..+.+..+ .. .++| ++
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~-------~~~~s~~~l~~~l~~~~~~~~~~p-ii 139 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR-------ANAESMRNMRENLAEYGLTLDDVP-IV 139 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHH-------HHHHHHHHHHHHHHHTTCCTTSSC-EE
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhh-------HhHHHHHHHHHHHHhhccccCCCC-EE
Confidence 2223456799999999999998888899999999999999865431 222322222 22 3677 99
Q ss_pred EEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 225 vviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+|+||+|+... .. .+++..+++..++ .+++++||++|.|+.+++.
T Consensus 140 lv~NK~Dl~~~-~~-------~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 140 IQVNKRDLPDA-LP-------VEMVRAVVDPEGK-----FPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp EEEECTTSTTC-CC-------HHHHHHHHCTTCC-----SCEEECBGGGTBTHHHHHH
T ss_pred EEEEchhcccc-cC-------HHHHHHHHHhcCC-----ceEEEEecCCCcCHHHHHH
Confidence 99999999542 11 1233344444432 2799999999999999754
No 73
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.73 E-value=1.7e-17 Score=147.30 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=101.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|+.++|||||+++|+.... .. ......|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSF--DP---------------------------NINPTIGASFMTKTVQYQNEL 54 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC--CT---------------------------TCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC--CC---------------------------CCCCceeEEEEEEEEEECCeE
Confidence 3568999999999999999999953211 00 001123444444334444445
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+.+|...+...++.+|++|+|+|+..+... ......+..+... ++| +++|+||+|+....
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETF------STLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGC
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhCCCCCc-EEEEEECCcccccc
Confidence 7899999999999988888888999999999999876421 1223344444443 455 88999999994321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+.. .++...+.+.. .++++++||++|.|+.+++
T Consensus 128 --~v~----~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 160 (170)
T 1z0j_A 128 --EVM----ERDAKDYADSI------HAIFVETSAKNAININELF 160 (170)
T ss_dssp --CSC----HHHHHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred --ccC----HHHHHHHHHHc------CCEEEEEeCCCCcCHHHHH
Confidence 101 11222333333 3589999999999999863
No 74
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=1.4e-17 Score=150.30 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=100.1
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+..+|+++|+.++|||||+++|+...- . ....|+......+...
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~ 63 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV--V--------------------------------HTSPTIGSNVEEIVIN 63 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC--E--------------------------------EEECCSSSSCEEEEET
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC--C--------------------------------ccCCcCceeeEEEEEC
Confidence 34558999999999999999999943210 0 0111222223445567
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~ 234 (475)
+..+.|+||||+.+|...+...+..+|++|+|+|+..... | ....+.+..+.. .++| +++|+||+|+..
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 136 (181)
T 2h17_A 64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANKQDVKE 136 (181)
T ss_dssp TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhCCCe-EEEEEECCCccc
Confidence 8999999999999998888888899999999999987632 1 133333433332 4666 999999999943
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.. ..+++.+.+. ...+. ...++++++||++|.|+.++
T Consensus 137 ~~----~~~~i~~~~~----~~~~~-~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 137 CM----TVAEISQFLK----LTSIK-DHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp CC----CHHHHHHHTT----GGGCC-SSCEEEEECBTTTTBTHHHH
T ss_pred CC----CHHHHHHHhC----ccccc-CCceEEEEccCCCCcCHHHH
Confidence 21 1222322221 11111 12568999999999999985
No 75
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.73 E-value=5.8e-18 Score=153.23 Aligned_cols=150 Identities=16% Similarity=0.124 Sum_probs=94.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 159 (475)
+..+|+++|++|+|||||+++|+.... .. . ..+.+.......+...+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~------------------------~------~~~t~~~~~~~~~~~~~~ 50 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VD------------------------E------YDPTIEDSYRKQVVIDGE 50 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CC------------------------C------CCTTCCEEEEEEEEETTE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CC------------------------C------CCCCchheEEEEEEECCc
Confidence 467999999999999999999953221 00 0 00111111112233334
Q ss_pred -eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011910 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 -~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+..|...+...+..+|++++|+|+...... ......+..+.. .++| +++|+||+|+..
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSF------EDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPS 123 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHH------HHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSS
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHH------HHHHHHHHHHHHhcCCCCCc-EEEEEECccCcc
Confidence 4578899999999988888888999999999999875321 122223333322 3677 999999999954
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.....+. +..+.+..+ ++++++||++|.|+.+++.
T Consensus 124 ~~~~~~~-------~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 124 RTVDTKQ-------AQDLARSYG------IPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp CSSCHHH-------HHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred cccCHHH-------HHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 3322222 222333333 4799999999999999754
No 76
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.73 E-value=4.5e-18 Score=150.33 Aligned_cols=151 Identities=18% Similarity=0.112 Sum_probs=95.9
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 158 (475)
+..+|+++|++|+|||||+++|+.... .. .. ....+ +.. ...+...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~------------------------~~---~~~~~-~~~--~~~~~~~~~ 49 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTF--IE------------------------KY---DPTIE-DFY--RKEIEVDSS 49 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC--CS------------------------CC---CTTCC-EEE--EEEEEETTE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC--cc------------------------cC---CCCcc-eeE--EEEEEECCE
Confidence 357899999999999999999853211 00 00 00011 111 1223333
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~ 234 (475)
...+.|+||||+.+|.......+..+|++++|+|+...... ......+..+.. .+.| +++|+||+|+..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 122 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSF------QDIKPMRDQIIRVKRYEKVP-VILVGNKVDLES 122 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHH------HHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHH------HHHHHHHHHHHHhcCCCCCC-EEEEEECCcccc
Confidence 35599999999999998888888999999999999875321 122222222222 3677 999999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. +... .+...+.+..+ ++++++||++|.|+.+++.
T Consensus 123 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 158 (167)
T 1kao_A 123 ER--EVSS----SEGRALAEEWG------CPFMETSAKSKTMVDELFA 158 (167)
T ss_dssp GC--CSCH----HHHHHHHHHHT------SCEEEECTTCHHHHHHHHH
T ss_pred cc--cCCH----HHHHHHHHHhC------CCEEEecCCCCcCHHHHHH
Confidence 11 1111 12223334433 4799999999999998643
No 77
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.73 E-value=1.3e-17 Score=150.94 Aligned_cols=153 Identities=19% Similarity=0.203 Sum_probs=101.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|++|+|||||+++|+... .. ....|+......+...+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD--------------------------------TISPTLGFNIKTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS--------------------------------SCCCCSSEEEEEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC--------------------------------cccccCccceEEEEECC
Confidence 466899999999999999999984321 00 01112222234455678
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..+.|+||||+.+|...+...+..+|++|+|+|+..+.. + ....+.+..+.. .+.| +++|+||+|+...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR---M---QDCQRELQSLLVEERLAGAT-LLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCC
Confidence 999999999999998888888899999999999987632 1 123333333332 3566 9999999999542
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ..+++.+.+.. ..+. ...++++++||++|.|+.++++
T Consensus 135 ~----~~~~~~~~~~~----~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (186)
T 1ksh_A 135 L----SCNAIQEALEL----DSIR-SHHWRIQGCSAVTGEDLLPGID 172 (186)
T ss_dssp C----CHHHHHHHTTG----GGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred C----CHHHHHHHhCh----hhcc-CCceEEEEeeCCCCCCHHHHHH
Confidence 1 12233322211 1111 1356899999999999998643
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.73 E-value=1.7e-17 Score=152.80 Aligned_cols=153 Identities=13% Similarity=0.115 Sum_probs=98.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
....+|+++|++|+|||||+++|+...... .....++.+.....+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 54 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-------------------------------QYKATIGADFLTKEVMVDD 54 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS-------------------------------SCCCCCSEEEEEEEEESSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC-------------------------------CCCCcccceEEEEEEEECC
Confidence 456899999999999999999995322100 001122222223333333
Q ss_pred -CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-------cCCceEEEEEEcc
Q 011910 159 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNKM 230 (475)
Q Consensus 159 -~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-------~~i~~iivviNKi 230 (475)
...+.|+||||+..|...+...++.+|++|+|+|+..+... ......+..+.. .++| +++|+||+
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 127 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTF------KTLDSWRDEFLIQASPRDPENFP-FVVLGNKI 127 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHHCCSSGGGSC-EEEEEECT
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHH------HHHHHHHHHHHHhcccccCCCCc-EEEEEECC
Confidence 36799999999999988877888999999999999876421 122222222222 3677 89999999
Q ss_pred CCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+....... + ++..+.... ..++++++||++|.|+.+++.
T Consensus 128 Dl~~~~~~~---~----~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 128 DLENRQVAT---K----RAQAWCYSK-----NNIPYFETSAKEAINVEQAFQ 167 (207)
T ss_dssp TSSCCCSCH---H----HHHHHHHHT-----TSCCEEECBTTTTBSHHHHHH
T ss_pred CCcccccCH---H----HHHHHHHhc-----CCceEEEEeCCCCCCHHHHHH
Confidence 995322111 1 122222211 245899999999999998754
No 79
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.73 E-value=1.4e-17 Score=151.73 Aligned_cols=155 Identities=12% Similarity=0.170 Sum_probs=96.4
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
....++|+++|++|+|||||+++|+..... . ......|.|.......+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~---------------------------~~~~~~~~t~~~~~~~~--- 67 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNL--A---------------------------RTSSKPGKTQTLNFYII--- 67 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEEE---
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc--c---------------------------ccCCCCCceeeEEEEEE---
Confidence 346689999999999999999999532100 0 00011233333322222
Q ss_pred CeeEEEEeCCC----------CcCcHHHHhhc---cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEE
Q 011910 159 TTRFTILDAPG----------HKSYVPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 225 (475)
Q Consensus 159 ~~~~~liDtPG----------h~~f~~~~~~~---~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iiv 225 (475)
+..+.|+|||| +..|...+... ...+|++++|+|+..+.. ....+.+..+...++| +++
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~ 139 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS-------NDDVQMYEFLKYYGIP-VIV 139 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEE
Confidence 34799999999 44443333333 344599999999988743 2344455666667888 999
Q ss_pred EEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 226 viNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+||+|+... .......+++...+.. ....+++++||++|.|+.+++.
T Consensus 140 v~nK~Dl~~~----~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~ 187 (195)
T 1svi_A 140 IATKADKIPK----GKWDKHAKVVRQTLNI-----DPEDELILFSSETKKGKDEAWG 187 (195)
T ss_dssp EEECGGGSCG----GGHHHHHHHHHHHHTC-----CTTSEEEECCTTTCTTHHHHHH
T ss_pred EEECcccCCh----HHHHHHHHHHHHHHcc-----cCCCceEEEEccCCCCHHHHHH
Confidence 9999999432 2233333444433322 1246899999999999998643
No 80
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.73 E-value=9.1e-18 Score=149.23 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=92.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
....+|+++|+.|+|||||+++|+.... .. .....++.......+...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~ 52 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKF--ND-----------------------------KHITTLGASFLTKKLNIGG 52 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCC--CS-----------------------------SCCCCCSCEEEEEEEESSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC--Cc-----------------------------CCCCccceEEEEEEEEECC
Confidence 3567999999999999999999953211 00 000111112222233333
Q ss_pred -CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011910 159 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 -~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~ 234 (475)
...+.|+||||+.+|.......++.+|++|+|+|+..+.. + ......+..+.. .++| +++|+||+|+..
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 125 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS---F---QKVKNWVKELRKMLGNEIC-LCIVGNKIDLEK 125 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHGGGSE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 3578999999999998888788899999999999987532 1 122333333332 4677 899999999943
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. .... +++..+++.. .++++++||++|.|+.+++.
T Consensus 126 ~~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 126 ER--HVSI----QEAESYAESV------GAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp GC--CSCH----HHHHHHHHHT------TCEEEEEBTTTTBSHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 11 1111 1223344443 35799999999999998643
No 81
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=1.3e-17 Score=148.35 Aligned_cols=146 Identities=24% Similarity=0.281 Sum_probs=94.3
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|++|+|||||+++|...... .....++|++.....+...+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~ 51 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-------------------------------IGNWPGVTVEKKEGEFEYNGEK 51 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-------------------------------CC-----CCCCCEEEEEETTEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-------------------------------ccCCCCcceeeeEEEEEECCcE
Confidence 478999999999999999999432110 0011234444444456667889
Q ss_pred EEEEeCCCCcCcHH-----HH-hhcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCC
Q 011910 162 FTILDAPGHKSYVP-----NM-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 162 ~~liDtPGh~~f~~-----~~-~~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~ 233 (475)
+.++||||+.+|.. .+ ...+ ..+|++++|+|+... ......+..+...+.| +|+|.||+|+.
T Consensus 52 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---------~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 121 (165)
T 2wji_A 52 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMDLA 121 (165)
T ss_dssp EEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---------HHHHHHHHHHHHTTCC-EEEEEECHHHH
T ss_pred EEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---------hHhHHHHHHHHhcCCC-EEEEEEchHhc
Confidence 99999999988741 11 1222 379999999998752 1333445555567888 89999999983
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
... .+..+...+.+.++ ++++++||++|.|+.+++
T Consensus 122 ~~~-------~~~~~~~~~~~~~~------~~~~~~SA~~~~~v~~l~ 156 (165)
T 2wji_A 122 KSL-------GIEIDVDKLEKILG------VKVVPLSAAKKMGIEELK 156 (165)
T ss_dssp HHT-------TCCCCHHHHHHHHT------SCEEECBGGGTBSHHHHH
T ss_pred ccc-------ChhhHHHHHHHHhC------CCEEEEEcCCCCCHHHHH
Confidence 110 00012223333333 479999999999999864
No 82
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.73 E-value=2.3e-17 Score=151.61 Aligned_cols=155 Identities=18% Similarity=0.128 Sum_probs=102.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|+.|+|||||+++|+.... .. ......|.+.......+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSF--TP---------------------------AFVSTVGIDFKVKTIYRNDKR 56 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCC--CS---------------------------CCCCCCSEEEEEEEEEETTEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------CcCCccceeEEEEEEEECCeE
Confidence 3468999999999999999999843211 00 000112333333333333335
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+.+|...+...++.+|++|+|+|+..+.. | ......+..+.. .+.| +++|+||+|+....
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDER 129 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSC
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccCccc
Confidence 689999999999999888888999999999999987532 1 123334444444 2566 99999999994321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... +++..+.+..+ ++++++||++|.|+.+++.
T Consensus 130 --~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 130 --VVSS----ERGRQLADHLG------FEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp --CSCH----HHHHHHHHHHT------CEEEECBTTTTBSSHHHHH
T ss_pred --ccCH----HHHHHHHHHCC------CeEEEEECCCCCCHHHHHH
Confidence 1111 12233344443 4799999999999998754
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=4.1e-17 Score=144.18 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=98.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|+.|+|||||+++|+...- . + ...|+......+...+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~--~-------------------------~-------~~~t~~~~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEI--V-------------------------T-------TIPTIGFNVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS--S-------------------------C-------CCCCSSCCEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCc--C-------------------------c-------ccCcCceeEEEEEECCEEE
Confidence 3799999999999999999943210 0 0 0112222334456678899
Q ss_pred EEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCch
Q 011910 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~~ 238 (475)
.|+||||+.+|...+...+..+|++++|+|+..... | ....+.+..+.. .+.| +++|+||+|+....
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 117 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---NEAREELMRMLAEDELRDAV-LLVFANKQDLPNAM-- 117 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC--
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCC--
Confidence 999999999998888888899999999999987531 1 122333333322 2666 99999999994321
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..+++.+.+... .+. ...++++++||++|.|+.+++
T Consensus 118 --~~~~~~~~~~~~----~~~-~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 118 --NAAEITDKLGLH----SLR-HRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp --CHHHHHHHTTGG----GCS-SCCEEEEECBTTTTBTHHHHH
T ss_pred --CHHHHHHHhCcc----ccc-CccEEEEEcccCCCcCHHHHH
Confidence 122333322211 111 124689999999999999863
No 84
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.73 E-value=1.3e-17 Score=151.70 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=102.5
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
....++|+++|+.|+|||||+++|+...... .....|.|..... ...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~t~~~~~---~~~ 66 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------------------------VSKTPGKTRSINF---YLV 66 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------------------------CCSSCCCCCCEEE---EEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccc------------------------------ccCCCCCccCeEE---EEE
Confidence 3455789999999999999999995432100 0011223322221 222
Q ss_pred CeeEEEEeCCC----------CcCc---HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEE
Q 011910 159 TTRFTILDAPG----------HKSY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 225 (475)
Q Consensus 159 ~~~~~liDtPG----------h~~f---~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iiv 225 (475)
+..+.++|||| +..| .......+..+|++++|+|+..+.. ......+..+...++| +++
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~ 138 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ-------DSDLMMVEWMKSLNIP-FTI 138 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EEE
Confidence 45789999999 3333 3344445566799999999987642 3455566677777888 999
Q ss_pred EEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 226 viNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+||+|+... .......+++..++...+ .++++++||++|.|+.++++
T Consensus 139 v~nK~Dl~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~~ 186 (195)
T 3pqc_A 139 VLTKMDKVKM----SERAKKLEEHRKVFSKYG-----EYTIIPTSSVTGEGISELLD 186 (195)
T ss_dssp EEECGGGSCG----GGHHHHHHHHHHHHHSSC-----CSCEEECCTTTCTTHHHHHH
T ss_pred EEEChhcCCh----HHHHHHHHHHHHHHhhcC-----CCceEEEecCCCCCHHHHHH
Confidence 9999999532 234455555666655432 45899999999999998643
No 85
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=1.2e-17 Score=148.04 Aligned_cols=152 Identities=18% Similarity=0.127 Sum_probs=97.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 158 (475)
...+|+++|++|+|||||+++|+... ... .....++.+.....+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 52 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI--FTK-----------------------------DYKKTIGVDFLERQIQVNDE 52 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC--CCC-----------------------------CSSCCCSSSEEEEEEEETTE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC--CCC-----------------------------CCCCceEEEEEEEEEEECCE
Confidence 45799999999999999999995321 100 000111111222233333
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~~ 236 (475)
...+.|+||||+..|...+...+..+|++++|+|+..... + ......+..+.. .+.| +++|+||+|+....
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES---F---EAISSWREKVVAEVGDIP-TALVQNKIDLLDDS 125 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGC
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccCccc
Confidence 4579999999999988777778889999999999987542 1 122333333332 3777 89999999984311
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+... +++..+++..+ ++++++||++|.|+.+++.
T Consensus 126 --~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 126 --CIKN----EEAEGLAKRLK------LRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp --SSCH----HHHHHHHHHHT------CEEEECBTTTTBSSHHHHH
T ss_pred --ccCH----HHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Confidence 1111 22233444443 4799999999999998643
No 86
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.4e-17 Score=153.56 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=100.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|+.|+|||||+++|+... ... .....++.+.....+..++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 72 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGL--FPP-----------------------------GQGATIGVDFMIKTVEING 72 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSS--CCT-----------------------------TCCCCCSEEEEEEEEEETT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCC--CCC-----------------------------CCCCccceeEEEEEEEECC
Confidence 456899999999999999999984321 110 0011222233333444444
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+..|...+...++.+|++|+|+|+..... | ......+..+... ++| +++|+||+|+..
T Consensus 73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 145 (201)
T 2ew1_A 73 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---F---RCLPEWLREIEQYASNKVI-TVLVGNKIDLAE 145 (201)
T ss_dssp EEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 579999999999999888888999999999999987532 1 1223344444332 566 899999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. +... ++...+.+.. .++++++||++|.|+.+++.
T Consensus 146 ~~--~v~~----~~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 146 RR--EVSQ----QRAEEFSEAQ------DMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp GC--SSCH----HHHHHHHHHH------TCCEEECCTTTCTTHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 11 1011 1222233333 34799999999999998754
No 87
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.73 E-value=2.7e-17 Score=150.27 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=97.9
Q ss_pred cCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 77 ~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
...++..+|+++|++|+|||||+++|+. +... . ...|+......+.
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~--~~~~-------------------------~-------~~~t~~~~~~~~~ 69 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKL--GEIV-------------------------T-------TIPTIGFNVETVE 69 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCS--SCCE-------------------------E-------EEEETTEEEEEEE
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHh--CCcc-------------------------c-------cCCcCceeEEEEE
Confidence 3445678999999999999999999831 1100 0 1123223334466
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 232 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~ 232 (475)
..+..+.|+||||+.+|...+...+..+|++|+|+|+..+.. | ....+.+..+.. .+.| +++|+||+|+
T Consensus 70 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl 142 (192)
T 2b6h_A 70 YKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---QESADELQKMLQEDELRDAV-LLVFANKQDM 142 (192)
T ss_dssp ETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred ECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHhcccccCCCe-EEEEEECCCC
Confidence 678999999999999998877778889999999999987631 1 123333333322 2667 9999999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.... ..+++.+.+.... .. ...++++++||++|.|+.+++
T Consensus 143 ~~~~----~~~~i~~~~~~~~----~~-~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 143 PNAM----PVSELTDKLGLQH----LR-SRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp TTCC----CHHHHHHHTTGGG----CS-SCCEEEEECBTTTTBTHHHHH
T ss_pred CCCC----CHHHHHHHhCccc----cc-CCceEEEECcCCCcCCHHHHH
Confidence 4321 1223333222111 11 124689999999999999864
No 88
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.5e-17 Score=151.35 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=101.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|++++|||||+++|+.... .. ......|.+.......+....
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 63 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTF--DP---------------------------ELAATIGVDFKVKTISVDGNK 63 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCC--CT---------------------------TCCCCCSEEEEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCC--Cc---------------------------cCCCccceEEEEEEEEECCeE
Confidence 4568999999999999999999943211 00 001112334433333344445
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..+.|+||||+..|...+...++.+|++|+|+|+..+... ......+..+.. .++| +++|+||+|+...
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF------VKLDNWLNELETYCTRNDIV-NMLVGNKIDKENR 136 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHH------HTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSC
T ss_pred EEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHH------HHHHHHHHHHHHhcCcCCCc-EEEEEECCcCccc
Confidence 7899999999999988888888999999999999876321 123333333333 2456 8999999999432
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... ++...+++.. .++++++||++|.|+.+++.
T Consensus 137 ~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 137 EVDR-------NEGLKFARKH------SMLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp CSCH-------HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred ccCH-------HHHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 2211 1222333333 35799999999999998644
No 89
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.73 E-value=1.9e-17 Score=146.48 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=94.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 158 (475)
+..+|+++|+.|+|||||+++|+... ... +.. ...+.+. ...+...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~------------------------~~~---~t~~~~~---~~~~~~~~~ 50 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDE--FVE------------------------DYE---PTKADSY---RKKVVLDGE 50 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCS------------------------CCC---TTCCEEE---EEEEEETTE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc--cCC------------------------CCC---CCcceEE---EEEEEECCE
Confidence 45799999999999999999995321 100 000 0011111 1122333
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~ 234 (475)
...+.|+||||+.+|...+...++.+|++++|+|+..... + ......+..+.. .+.| +++|+||+|+..
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 123 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENVP-FLLVGNKSDLED 123 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEECccccc
Confidence 3579999999999999888888899999999999987532 1 122222233322 2677 999999999843
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. +... +++..+++..+ ++++++||++|.|+.+++.
T Consensus 124 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 124 KR--QVSV----EEAKNRADQWN------VNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp GC--CSCH----HHHHHHHHHHT------CEEEECCTTTCTTHHHHHH
T ss_pred cC--ccCH----HHHHHHHHHcC------CeEEEeCCCCCCCHHHHHH
Confidence 21 1111 22333444433 4799999999999998643
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.73 E-value=3.8e-17 Score=149.61 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=98.9
Q ss_pred cCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 77 ~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
...++..+|+++|..++|||||+++|... ... ....+.+.......+.
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~---~~~-----------------------------~~~~~~~~~~~~~~~~ 62 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK---MSP-----------------------------NETLFLESTNKIYKDD 62 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSC---CCG-----------------------------GGGGGCCCCCSCEEEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhc---CCC-----------------------------cceeeeccccceeeee
Confidence 34456789999999999999999976321 110 0011222222222222
Q ss_pred ---eCCeeEEEEeCCCCcCcHHHH---hhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH--HcCCceEEEEEE
Q 011910 157 ---TETTRFTILDAPGHKSYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVN 228 (475)
Q Consensus 157 ---~~~~~~~liDtPGh~~f~~~~---~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~--~~~i~~iivviN 228 (475)
.....+.|+||||+.+|...+ ...++.+|++|+|+|+.....+ .+ ....+.+..+. ..++| +++|.|
T Consensus 63 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~---~~~~~~l~~~~~~~~~~p-iilv~n 137 (196)
T 3llu_A 63 ISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME-AL---TRLHITVSKAYKVNPDMN-FEVFIH 137 (196)
T ss_dssp ECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHH-HH---HHHHHHHHHHHHHCTTCE-EEEEEE
T ss_pred ccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHH-HH---HHHHHHHHHHHhcCCCCc-EEEEEe
Confidence 345789999999999997776 5778899999999999986211 11 12222222221 12677 999999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
|+|+...+......+.+..+....+...... ...++++++||++ .|+.+++
T Consensus 138 K~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~e~Sa~~-~~v~~~f 188 (196)
T 3llu_A 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLE-KLHLSFYLTSIYD-HSIFEAF 188 (196)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT-TSCEEEEEECTTS-THHHHHH
T ss_pred ccccCchhhhhHHHhHHHHHHHHHHHHhhhh-cCCcceEEEEech-hhHHHHH
Confidence 9998542211222333333333333332211 1257899999999 9999863
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.73 E-value=4.1e-17 Score=148.78 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=99.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|++|+|||||+++|.... .. ....|+......+...+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDR--LA--------------------------------TLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSC--CC--------------------------------CCCCCCSCEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--CC--------------------------------ccccCCCCCeEEEEECC
Confidence 445689999999999999999984311 00 01123333344566778
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..+.++||||+..|...+...++.+|++|+|+|+..+.. | ......+..+.. .+.| +++|+||+|+...
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 139 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER---F---DEARVELDALFNIAELKDVP-FVILGNKIDAPNA 139 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHH---H---HHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC
Confidence 999999999999998877778889999999999987632 1 122333333322 4677 9999999999542
Q ss_pred CchHHHHHHHHhhhhhHh-hhhc-CcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFL-KASG-YNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l-~~~~-~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. .+++.+.+.... ...+ +.....++++++||++|.|+.+++
T Consensus 140 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 183 (190)
T 1m2o_B 140 -VS---EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 183 (190)
T ss_dssp -CC---HHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHH
T ss_pred -CC---HHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHH
Confidence 11 222222221110 0000 000135789999999999999863
No 92
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.73 E-value=3.8e-17 Score=144.00 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=96.0
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--C
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 159 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 159 (475)
..+|+++|+.|+|||||+++|+.... ... .. ...+.. ....+... .
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~------------------------~~---~~~~~~---~~~~~~~~~~~ 50 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDE------------------------CD---PTIEDS---YRKQVVIDGET 50 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSC------------------------CC---TTCCEE---EEEEEEETTEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcC--ccc------------------------cC---CccceE---EEEEEEECCEE
Confidence 46899999999999999999953211 000 00 000111 11122233 3
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc----CCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~----~i~~iivviNKiD~~~~ 235 (475)
..+.++||||+.+|...+...+..+|++++|+|+..... + ....+.+..+... ++| +++|+||+|+...
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F---EDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAAR 123 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCC
T ss_pred EEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhc
Confidence 568999999999998888888889999999999986532 1 1223333333332 677 8999999998542
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... +.+..+.+..+ ++++++||++|.|+.+++.
T Consensus 124 ~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 124 TVES-------RQAQDLARSYG------IPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp CSCH-------HHHHHHHHHHT------CCEEEECTTTCTTHHHHHH
T ss_pred ccCH-------HHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Confidence 2221 12233334433 4799999999999998643
No 93
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.72 E-value=2.2e-17 Score=149.03 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=96.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+..+|+++|++|+|||||+++|+... +... .. ...+... .....+.....
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~--~~~~------------------------~~---~t~~~~~-~~~~~~~~~~~ 53 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGE------------------------YI---PTVFDNY-SANVMVDGKPV 53 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS--CCSS------------------------CC---CCSCCEE-EEEEEETTEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCC--CCCC------------------------cC---Cccccee-EEEEEECCEEE
Confidence 45799999999999999999984321 1100 00 0001111 01111222335
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHHc--CCceEEEEEEccCCCCCCc
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~~--~i~~iivviNKiD~~~~~~ 237 (475)
.+.|+||||+.+|.......++.+|++|+|+|+..+... .... ..+..+... +.| +++|+||+|+.....
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 126 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF------ENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKD 126 (186)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHH
T ss_pred EEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhH------HHHHHHHHHHHHHhCCCCC-EEEEeEcccccccch
Confidence 677999999999988777788999999999999875321 1122 233344433 777 899999999843211
Q ss_pred hHHHHHH------HHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 238 SKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 238 ~~~~~~~------i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
..+.+.+ ..++...+.+..++ .+++++||++|.|+.+++
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 127 TIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVF 171 (186)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred hhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEecCCCccCHHHHH
Confidence 1111110 01122223333332 389999999999999863
No 94
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.72 E-value=1.6e-17 Score=151.28 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=100.2
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.....+|+++|+.++|||||+++|+....... .....|.+... ..+...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~--~~~~~~ 66 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGA--RMVNID 66 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------------CCSSEEE--EEEEET
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCcccceeEE--EEEEEC
Confidence 35568999999999999999999953211100 00011222222 233334
Q ss_pred C--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCC
Q 011910 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 233 (475)
Q Consensus 159 ~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~ 233 (475)
+ ..+.|+||||+..|...+...++.+|++|+|+|+..... + ......+..+... ++| +++|+||+|+.
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 139 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLTSWLEDARQHSSSNMV-IMLIGNKSDLE 139 (191)
T ss_dssp TEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccC
Confidence 3 579999999999998877788889999999999987532 1 1334444444443 667 89999999994
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... +... ++...+.+.. .++++++||++|.|+.+++.
T Consensus 140 ~~~--~v~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 140 SRR--DVKR----EEGEAFAREH------GLIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp GGC--CSCH----HHHHHHHHHH------TCEEEEECTTTCTTHHHHHH
T ss_pred Ccc--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 211 1011 1223334443 34799999999999998754
No 95
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.72 E-value=2.9e-18 Score=174.92 Aligned_cols=149 Identities=19% Similarity=0.179 Sum_probs=105.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|+.|+|||||+++|+..... ..+...|+|++.....+.+.+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVS------------------------------IVSDYAGTTTDPVYKSMELHP 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEETT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCC------------------------------ccCCCCCeeeeeEEEEEEECC
Confidence 45679999999999999999998432211 122346778887777777776
Q ss_pred e-eEEEEeCCCCcCcH-------HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 160 T-RFTILDAPGHKSYV-------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 160 ~-~~~liDtPGh~~f~-------~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
. .++|||||||.+|. ..+...+..+|++|+|+|+ +.. .++.+.+..+...++| +|+|+||+|
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~-------~~~~~~l~~l~~~~~p-iIvV~NK~D 151 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APT-------PYEDDVVNLFKEMEIP-FVVVVNKID 151 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCC-------HHHHHHHHHHHHTTCC-EEEECCCCT
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CCh-------HHHHHHHHHHHhcCCC-EEEEEeCcC
Confidence 5 89999999998873 3345567889999999999 432 5788899999999999 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+...... +..+++ .+.+ +++++++||++|.|+.++++
T Consensus 152 l~~~~~~-----~~~~~l---~~~~------g~~v~~vSAktg~gI~eL~~ 188 (423)
T 3qq5_A 152 VLGEKAE-----ELKGLY---ESRY------EAKVLLVSALQKKGFDDIGK 188 (423)
T ss_dssp TTTCCCT-----HHHHHS---SCCT------TCCCCCCSSCCTTSTTTHHH
T ss_pred CCCccHH-----HHHHHH---HHHc------CCCEEEEECCCCCCHHHHHH
Confidence 9654321 112222 2222 35899999999999999643
No 96
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=153.97 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=97.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|+.++|||||+++|+...... .....++.+.....+...+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 71 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ-------------------------------DSNHTIGVEFGSRVVNVGG 71 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------------------------------------CCEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc-------------------------------cCCCcccceeEEEEEEECC
Confidence 456899999999999999999995321100 0001122222223334444
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+.+|...+...++.+|++|+|+|+..+.. + ......+..+.. .++| +++|+||+|+..
T Consensus 72 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 144 (200)
T 2o52_A 72 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---Y---NSLAAWLTDARTLASPNIV-VILCGNKKDLDP 144 (200)
T ss_dssp EEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTCTTCE-EEEEEECGGGGG
T ss_pred eeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCCccc
Confidence 689999999999887777777889999999999987642 1 123333333333 3677 999999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ..... +...+++.. .++++++||++|.|+.+++.
T Consensus 145 ~~--~v~~~----~~~~~~~~~------~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 145 ER--EVTFL----EASRFAQEN------ELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp GC--CSCHH----HHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred cc--ccCHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 11 11111 222333333 35899999999999999754
No 97
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=148.26 Aligned_cols=153 Identities=17% Similarity=0.131 Sum_probs=89.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|++|+|||||+++|....... .....|.+.......+.....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD------------------------------LHEQLGEDVYERTLTVDGEDT 52 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc------------------------------ccCccccceeEEEEEECCEEE
Confidence 45799999999999999999984321100 000133333322222322335
Q ss_pred eEEEEeCCCCcCc--HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc----CCceEEEEEEccCCCC
Q 011910 161 RFTILDAPGHKSY--VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 161 ~~~liDtPGh~~f--~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~----~i~~iivviNKiD~~~ 234 (475)
.+.++||||+..+ .......++.+|++++|+|+..... | ....+.+..+... ++| +++|+||+|+..
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~ 125 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS---F---ESASELRIQLRRTHQADHVP-IILVGNKADLAR 125 (175)
T ss_dssp EEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHH---H---HHHHHHHHHHHHCC----CC-EEEEEECTTCTT
T ss_pred EEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhhccCCCC-EEEEEEChhhcc
Confidence 7899999999884 3333445678999999999986532 1 1233333444433 677 999999999943
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. +...+ +...+.... .++++++||++|.|+.+++.
T Consensus 126 ~~--~v~~~----~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 126 CR--EVSVE----EGRACAVVF------DCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp TC--CSCHH----HHHHHHHHH------TSEEEECBTTTTBSHHHHHH
T ss_pred cc--ccCHH----HHHHHHHHc------CCeEEEEecCCCCCHHHHHH
Confidence 21 11111 122233333 34799999999999998744
No 98
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.72 E-value=4e-17 Score=149.90 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=95.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|++|+|||||+++|... .+. ....|+......+..++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDD--RLG--------------------------------QHVPTLHPTSEELTIAG 68 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC----------------------------------------CCCCCSCEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC--CCC--------------------------------ccCCCCCceeEEEEECC
Confidence 44568999999999999999998321 000 01112222334566778
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..+.++||||+..|...+...++.+|++|+|+|+..... | ......+..+.. .++| +++|+||+|+...
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 141 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER---L---LESKEELDSLMTDETIANVP-ILILGNKIDRPEA 141 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEEECCCcccc
Confidence 999999999999988777777889999999999987531 1 122333333322 3677 9999999999542
Q ss_pred CchHHHHHHHHhhhhhHhhhhc---------Cc--ccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASG---------YN--VKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~---------~~--~~~~~~iipiSa~~g~gi~~l~ 281 (475)
...+ ++.+ .+.... +. ....++++++||++|.|+.+++
T Consensus 142 -~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 190 (198)
T 1f6b_A 142 -ISEE---RLRE----MFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190 (198)
T ss_dssp -CCHH---HHHH----HHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred -CCHH---HHHH----HhCcccccccccccccccccCceEEEEEEECCCCCCHHHHH
Confidence 2222 2222 222111 00 0125689999999999999863
No 99
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=5.7e-17 Score=167.30 Aligned_cols=147 Identities=20% Similarity=0.283 Sum_probs=100.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
+.|+++|.+|+|||||+++|+.....+ .+...|+|.+.....+.+.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------------------------VEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------------------------ecCCCCCccceeeEEEEECCeEE
Confidence 579999999999999999995432111 11236788888888888999999
Q ss_pred EEEeCCCCcCc---------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCC
Q 011910 163 TILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 163 ~liDtPGh~~f---------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~ 233 (475)
.||||||...+ ...+..+++.||++|+|+|+..+.+ ....+....++..+.| +++|+||+|+.
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~-------~~d~~i~~~l~~~~~p-~ilv~NK~D~~ 123 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGIT-------KEDESLADFLRKSTVD-TILVANKAENL 123 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCC-------HHHHHHHHHHHHHTCC-EEEEEESCCSH
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCCc
Confidence 99999997753 3344556789999999999998754 2444555556667888 89999999982
Q ss_pred CCCchHHHHHHHHhhh-hhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVNWSKERYDEIESKM-TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l-~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+ .. ...+ ..+ ..+|+. +++++||++|.|+.++++
T Consensus 124 --~---~~----~~~~~~~~-~~lg~~-----~~~~iSA~~g~gv~~L~~ 158 (439)
T 1mky_A 124 --R---EF----EREVKPEL-YSLGFG-----EPIPVSAEHNINLDTMLE 158 (439)
T ss_dssp --H---HH----HHHTHHHH-GGGSSC-----SCEECBTTTTBSHHHHHH
T ss_pred --c---cc----HHHHHHHH-HhcCCC-----CEEEEeccCCCCHHHHHH
Confidence 1 10 1122 222 244542 579999999999999744
No 100
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.72 E-value=1.7e-17 Score=148.97 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=89.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
.+..+|+++|+.|+|||||+++|+.... .. .....++.+.....+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKY--SQ-----------------------------QYKATIGADFLTKEVTVDG 54 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCC--CT-----------------------------TC---CCCSCEEEEECCSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcC--Cc-----------------------------ccCCccceEEEEEEEEEcC
Confidence 4568999999999999999999953211 00 000111122222333333
Q ss_pred --CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-------cCCceEEEEEEc
Q 011910 159 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNK 229 (475)
Q Consensus 159 --~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-------~~i~~iivviNK 229 (475)
...+.|+||||+..|...+...++.+|++|+|+|+..+... ......+..+.. .++| +++|+||
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 127 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSF------ENIKSWRDEFLVHANVNSPETFP-FVILGNK 127 (182)
T ss_dssp SCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHH------HTHHHHHHHHHHHHCCSCTTTCC-EEEEEEC
T ss_pred CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHH------HHHHHHHHHHHHHhcccCcCCCc-EEEEEEC
Confidence 46799999999999988888888999999999999876421 122333333222 4677 8999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 230 iD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+|+...... ... +++..+.+.. ...+++++||++|.|+.+++.
T Consensus 128 ~Dl~~~~~~-v~~----~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 170 (182)
T 1ky3_A 128 IDAEESKKI-VSE----KSAQELAKSL-----GDIPLFLTSAKNAINVDTAFE 170 (182)
T ss_dssp TTSCGGGCC-SCH----HHHHHHHHHT-----TSCCEEEEBTTTTBSHHHHHH
T ss_pred Ccccccccc-CCH----HHHHHHHHhc-----CCCeEEEEecCCCCCHHHHHH
Confidence 998422100 001 1122222211 245899999999999998644
No 101
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.72 E-value=2.2e-17 Score=146.15 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=96.7
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+..+|+++|++|+|||||+++|+.. ..... . ....+.... ....+.....
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~--~~~~~------------------------~---~~t~~~~~~-~~~~~~~~~~ 51 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQG--IFVEK------------------------Y---DPTIEDSYR-KQVEVDCQQC 51 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC--CCCCS------------------------C---CCCSEEEEE-EEEESSSCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC--CCCCC------------------------C---CCCccceEE-EEEEECCEEE
Confidence 3578999999999999999999532 11100 0 000111111 1112223356
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~ 236 (475)
.+.|+||||+..|...+...+..+|++++|+|+..... +. .....+..+.. .+.| +++|+||+|+....
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 124 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGC
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCcCCCc-EEEEEECccccccc
Confidence 79999999999998888888889999999999987532 11 22223333322 3677 89999999994321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... +++..+.+..+ ..+++++||++|.|+.+++.
T Consensus 125 --~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 125 --VVGK----EQGQNLARQWC-----NCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp --CSCH----HHHHHHHHHTT-----SCEEEECBTTTTBSHHHHHH
T ss_pred --cCCH----HHHHHHHHHcc-----CCcEEEecCCCCCCHHHHHH
Confidence 1111 12222333321 45899999999999998643
No 102
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=2.2e-17 Score=152.25 Aligned_cols=153 Identities=20% Similarity=0.151 Sum_probs=100.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++++|||||+++|+.... . ......++.......+...+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~ 54 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTY--T-----------------------------NDYISTIGVDFKIKTVELDG 54 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCC--C-----------------------------TTCCCSSCCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCcccceeEEEEEEECC
Confidence 3568999999999999999999843211 0 00011222222223344444
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+.+|...+...++.+|++|+|+|+..+... ......+..+.. .++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~------~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF------NGVKMWLQEIDRYATSTVL-KLLVGNKCDLKD 127 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 5799999999999988888888999999999999876421 122333333433 2466 899999999943
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ....+ +...+.... .++++++||++|.|+.+++.
T Consensus 128 ~~--~~~~~----~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 128 KR--VVEYD----VAKEFADAN------KMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp TC--CSCHH----HHHHHHHHT------TCCEEECCTTTCTTHHHHHH
T ss_pred cc--ccCHH----HHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 21 11111 122233333 34799999999999998754
No 103
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=1e-17 Score=150.96 Aligned_cols=153 Identities=16% Similarity=0.245 Sum_probs=97.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
++..+|+++|++|+|||||+++|+. +... ....|+......+...+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI--GEVV--------------------------------TTKPTIGFNVETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC--SEEE--------------------------------EECSSTTCCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCcC--------------------------------ccCCcCccceEEEEECC
Confidence 5678999999999999999998831 1100 01112222233455678
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..+.++||||+.+|...+...+..+|++++|+|+..+.. + ....+.+..+.. .+.| +++|+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR---M---STASKELHLMLQEEELQDAA-LLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT---H---HHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCC
Confidence 999999999999998888888899999999999987631 1 123333333332 4566 9999999999432
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ..+++.+.+ ...... ...++++++||++|.|+.++++
T Consensus 135 ~----~~~~i~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (183)
T 1moz_A 135 L----SASEVSKEL----NLVELK-DRSWSIVASSAIKGEGITEGLD 172 (183)
T ss_dssp C----CHHHHHHHT----TTTTCC-SSCEEEEEEBGGGTBTHHHHHH
T ss_pred C----CHHHHHHHh----Cccccc-CCceEEEEccCCCCcCHHHHHH
Confidence 1 122222222 211111 1356899999999999998643
No 104
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.72 E-value=1.4e-17 Score=153.09 Aligned_cols=161 Identities=13% Similarity=0.095 Sum_probs=99.7
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
+.....+|+++|+.|+|||||+++|...... .. ....++.... ..+..
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~-----------------------------~~~t~~~~~~-~~~~~ 68 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFP--EV-----------------------------YVPTVFENYI-ADIEV 68 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCC--SS-----------------------------CCCSSCCCCE-EEEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCC--cc-----------------------------cCCcccceEE-EEEEE
Confidence 3456689999999999999999998532110 00 0000111110 11233
Q ss_pred CC--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcch-HHHHHHHHHc--CCceEEEEEEccCC
Q 011910 158 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t-~~~l~~~~~~--~i~~iivviNKiD~ 232 (475)
.+ ..+.|+||||+.+|...+...++.+|++|+|+|+..... +. .. ...+..+... ++| +++|+||+|+
T Consensus 69 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 141 (201)
T 2gco_A 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVP-IILVGNKKDL 141 (201)
T ss_dssp TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEecHHh
Confidence 33 578999999999998888888899999999999987532 11 12 2333444444 788 8999999999
Q ss_pred CCCCchHHHHHH------HHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~------i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.......+.+.. ..++...+.+..++ .+++++||++|.|+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~~ 192 (201)
T 2gco_A 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISA-----FGYLECSAKTKEGVREVFE 192 (201)
T ss_dssp TTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred hcCccchhhhcccccCcCCHHHHHHHHHhCCC-----cEEEEeeCCCCCCHHHHHH
Confidence 543211111110 01122333344332 3799999999999998643
No 105
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.72 E-value=1.7e-17 Score=153.13 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=98.5
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+..+|+++|+.|+|||||+++|+... +... ....+.......+...
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~ 74 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNA--FPGE------------------------------YIPTVFDNYSANVMVD 74 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSC--CCC-------------------------------CCCCSEEEEEEEEECC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCC--CCCC------------------------------cCCeecceeEEEEEEC
Confidence 4566899999999999999999984321 1100 0111111112223333
Q ss_pred --CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHHc--CCceEEEEEEccCCC
Q 011910 159 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 233 (475)
Q Consensus 159 --~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~~--~i~~iivviNKiD~~ 233 (475)
...+.|+||||+.+|.......++.+|++|+|+|+..+... .... ..+..+... +.| +++|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF------ENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHH------HHHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 35567999999999988888889999999999999876421 1121 333444444 777 99999999994
Q ss_pred CCCchHHHHHH------HHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 234 TVNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 234 ~~~~~~~~~~~------i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
......+.+.+ ..++...+.+..++ .+++++||++|.|+.+++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~ 196 (204)
T 4gzl_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVF 196 (204)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred cchhhhhhhhccccccccHHHHHHHHHhcCC-----cEEEEeeCCCCCCHHHHH
Confidence 33211111110 01222334444432 379999999999999863
No 106
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=9.3e-18 Score=152.91 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=104.7
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.....+|+++|+.++|||||+++|+....... .....|.+.......+...
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 70 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPA-----------------------------FVSTVGIDFKVKTVYRHEK 70 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCC-----------------------------EEEEETTTEEEEEEEETTT
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcc-----------------------------cCCCeeeEEEEEEEEECCE
Confidence 34668999999999999999999953221000 0001233333333444456
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~ 235 (475)
...+.|+||||+..|...+...++.+|++|+|+|+..... | ......+..+.. .++| +++|+||+|+...
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 143 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEE 143 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCccc
Confidence 7889999999999999888888999999999999987532 1 133444444444 3667 8999999998422
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ... ..+...+.+..+ ++++++||++|.|+.+++.
T Consensus 144 ~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 144 R--VVP----TEKGQLLAEQLG------FDFFEASAKENISVRQAFE 178 (191)
T ss_dssp C--CSC----HHHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred c--ccC----HHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 1 111 112233334433 4799999999999998754
No 107
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.72 E-value=5.5e-17 Score=146.70 Aligned_cols=152 Identities=19% Similarity=0.210 Sum_probs=99.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|+.|+|||||+++|.... .. . ...|+......+...+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~----------------------------~----~~~t~g~~~~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED--IS----------------------------H----ITPTQGFNIKSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--CE----------------------------E----EEEETTEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC--CC----------------------------c----ccCcCCeEEEEEEECC
Confidence 456899999999999999999983210 00 0 0111112223455668
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~ 235 (475)
..+.++||||+..|...+...+..+|++++|+|+..... | ....+.+..+. ..+.| +++|+||+|+...
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR---F---EETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 899999999999998888888899999999999987531 1 12223333222 13577 9999999999543
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ..+++.+.+.. .... ...++++++||++|.|+.+++
T Consensus 133 ~----~~~~~~~~~~~----~~~~-~~~~~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 133 A----PASEIAEGLNL----HTIR-DRVWQIQSCSALTGEGVQDGM 169 (181)
T ss_dssp C----CHHHHHHHTTG----GGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred C----CHHHHHHHhCc----hhcc-CCceEEEEccCCCCCCHHHHH
Confidence 2 11223222211 1111 125689999999999999863
No 108
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=4.2e-17 Score=151.23 Aligned_cols=158 Identities=21% Similarity=0.250 Sum_probs=93.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
.+.++|+++|+.|+|||||+++|+... ... ...++......+...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~ 50 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ--YRD--------------------------------TQTSITDSSAIYKVNN 50 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC--CCC--------------------------------BCCCCSCEEEEEECSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--ccc--------------------------------ccCCcceeeEEEEecC
Confidence 456799999999999999999995322 100 011111122224444
Q ss_pred --CeeEEEEeCCCCcCcHH-HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHH-HH-----HcCCceEEEEEEc
Q 011910 159 --TTRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AK-----TLGVTKLLLVVNK 229 (475)
Q Consensus 159 --~~~~~liDtPGh~~f~~-~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~-~~-----~~~i~~iivviNK 229 (475)
...+.|+||||+.+|.. .+...++.+|++|+|+|+.... ..+ ....+.+.. +. ..++| +++|+||
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 124 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ--REV---KDVAEFLYQVLIDSMALKNSPS-LLIACNK 124 (214)
T ss_dssp TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH--HHH---HHHHHHHHHHHHHHHTSTTCCE-EEEEEEC
T ss_pred CCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC--HHH---HHHHHHHHHHHhhhhhcccCCC-EEEEEEC
Confidence 57899999999999987 4445578999999999997621 000 011222221 11 12566 9999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhhHhhh---------------------hc-----Ccc-c--CCeeEEEeecccc------
Q 011910 230 MDDHTVNWSKERYDEIESKMTPFLKA---------------------SG-----YNV-K--KDVQFLPISGLMG------ 274 (475)
Q Consensus 230 iD~~~~~~~~~~~~~i~~~l~~~l~~---------------------~~-----~~~-~--~~~~iipiSa~~g------ 274 (475)
+|+...... +.+.+.+...+.. .+ |.. . ..++++++||++|
T Consensus 125 ~Dl~~~~~~----~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~ 200 (214)
T 2fh5_B 125 QDIAMAKSA----KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGS 200 (214)
T ss_dssp TTSTTCCCH----HHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------C
T ss_pred CCCCCcccH----HHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccc
Confidence 999644322 2333333333321 00 000 0 1678999999999
Q ss_pred ccccccc
Q 011910 275 LNMKTRV 281 (475)
Q Consensus 275 ~gi~~l~ 281 (475)
.|+++++
T Consensus 201 ~gv~~lf 207 (214)
T 2fh5_B 201 ADIQDLE 207 (214)
T ss_dssp CBCHHHH
T ss_pred cChHHHH
Confidence 9998853
No 109
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=149.33 Aligned_cols=153 Identities=19% Similarity=0.149 Sum_probs=99.3
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+.++|+++|+.|+|||||+++|+... +... . ....+.+. ...+...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~------------------------~---~~t~~~~~---~~~~~~~ 58 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDE--FVED------------------------Y---EPTKADSY---RKKVVLD 58 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCTT------------------------C---CTTCCEEE---EEEEEET
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCC--CCCC------------------------C---CCccceEE---EEEEEEC
Confidence 4566899999999999999999995322 1100 0 00011111 1223334
Q ss_pred C--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCC
Q 011910 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~ 232 (475)
+ ..+.|+||||+.+|...+...+..+|++++|+|+..... | ......+..+.. .++| +++|+||+|+
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 131 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENVP-FLLVGNKSDL 131 (206)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTCSCCC-EEEEEECTTC
T ss_pred CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEeccCc
Confidence 3 579999999999999888888899999999999987532 1 122233333332 2677 9999999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .+... +++..+++..+ ++++++||++|.|+.+++.
T Consensus 132 ~~~--~~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 132 EDK--RQVSV----EEAKNRAEQWN------VNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp GGG--CCSCH----HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred ccc--ccccH----HHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 432 11111 22333444433 4799999999999999754
No 110
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.71 E-value=1.8e-17 Score=149.27 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=95.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.++|+++|++|+|||||+++|+... ... +. ....+.+. ...+...+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~------------------------~~---~~t~~~~~---~~~~~~~~ 51 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQ--FVD------------------------SY---DPTIENTF---TKLITVNG 51 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSS--CCS------------------------CC---CTTCCEEE---EEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCC--CCC------------------------CC---CCCccccE---EEEEEECC
Confidence 356899999999999999999995221 100 00 00122222 22233344
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHH----HHHHHcCCceEEEEEEccCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l----~~~~~~~i~~iivviNKiD~~ 233 (475)
..+.|+||||+..|.......++.+|++|+|+|+...... + .....+ ..+...++| +++|+||+|+.
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 124 (181)
T 3t5g_A 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF---E---VIKVIHGKLLDMVGKVQIP-IMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHH---H---HHHHHHHHHHHHC----CC-EEEEEECTTCT
T ss_pred EEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHH---H---HHHHHHHHHHHhcCCCCCC-EEEEEECccch
Confidence 6789999999999977777778899999999999874321 1 122222 222233677 89999999984
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .... +++..+.+.. .++++++||++|.|+.+++.
T Consensus 125 ~~~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 125 MER--VISY----EEGKALAESW------NAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp TTC--CSCH----HHHHHHHHHT------TCEEEECCTTSHHHHHHHHH
T ss_pred hcc--eecH----HHHHHHHHHh------CCcEEEEecCCCCCHHHHHH
Confidence 221 1111 2233344443 34799999999999999744
No 111
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.71 E-value=2e-17 Score=150.28 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=100.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
++..+|+++|++++|||||+++|.. +... . ...|+......+...+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~-------------------------~-------~~~t~~~~~~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL--GDVV-------------------------T-------TVPTVGVNLETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC--SCCE-------------------------E-------ECSSTTCCEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc--CCCC-------------------------C-------cCCCCceEEEEEEECC
Confidence 4568999999999999999999831 1100 0 0012222233455678
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~ 235 (475)
..+.++||||+.+|...+...++.+|++|+|+|+..+.. + ....+.+..+.. .+.| +++|+||+|+...
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 138 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDR---M---GVAKHELYALLDEDELRKSL-LLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTT---H---HHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCC
Confidence 999999999999998777778889999999999987631 1 122333333322 2667 9999999999543
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ..+++.+.+.. ..+. ...++++++||++|.|+.++++
T Consensus 139 ~----~~~~~~~~~~~----~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 176 (189)
T 2x77_A 139 A----SEAEIAEQLGV----SSIM-NRTWTIVKSSSKTGDGLVEGMD 176 (189)
T ss_dssp C----CHHHHHHHTTG----GGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred C----CHHHHHHHhCh----hhcc-CCceEEEEccCCCccCHHHHHH
Confidence 1 11233332221 1111 1256899999999999998643
No 112
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.71 E-value=2.7e-17 Score=147.54 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=97.1
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+.++|+++|+.|+|||||+++|+.... .. +. ....+.... ..+...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~------------------------~~---~~t~~~~~~---~~~~~~ 53 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYF--VS------------------------DY---DPTIEDSYT---KICSVD 53 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSC--CS------------------------SC---CTTCCEEEE---EEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcC--cc------------------------cc---CCCcCceEE---EEEEEC
Confidence 34568999999999999999999954311 00 00 000111111 223344
Q ss_pred C--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHH-H---HcCCceEEEEEEccCC
Q 011910 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~-~---~~~i~~iivviNKiD~ 232 (475)
+ ..+.|+||||+.+|.......+..+|++++|+|+..... + ......+..+ . ..++| +++|+||+|+
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQS---F---NEVGKLFTQILRVKDRDDFP-VVLVGNKADL 126 (181)
T ss_dssp TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTSSCCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3 578999999999998777777889999999999987532 1 1222222222 2 23677 8999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... +... .+...+.... .++++++||++|.|+.+++.
T Consensus 127 ~~~~--~v~~----~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 127 ESQR--QVPR----SEASAFGASH------HVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp GGGC--CSCH----HHHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred cccc--ccCH----HHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 4311 1001 1122222332 35899999999999998754
No 113
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=152.19 Aligned_cols=156 Identities=16% Similarity=0.052 Sum_probs=96.7
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+.++|+++|..|+|||||+++|+..... . .. ....+.+. .....+..
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~------------------------~~---~~t~~~~~-~~~~~~~~ 69 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFS--E------------------------GY---DPTVENTY-SKIVTLGK 69 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCC--S------------------------CC---CCCSEEEE-EEEEC---
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCC--C------------------------CC---CCccceEE-EEEEEECC
Confidence 3456789999999999999999999532110 0 00 00011111 22222334
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~ 233 (475)
....+.|+||||+.+|...+...++.+|++|+|+|+..... | ......+..+. ..++| +++|+||+|+.
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS---F---QVIESLYQKLHEGHGKTRVP-VVLVGNKADLS 142 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHH---H---HHHHHHHHHHHC-----CCC-EEEEEECTTCG
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccCc
Confidence 56789999999999998888888899999999999987532 1 12222333322 23677 99999999984
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .... .+...+.+.. .++++++||++|.|+.+++.
T Consensus 143 ~~~--~v~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 143 PER--EVQA----VEGKKLAESW------GATFMESSARENQLTQGIFT 179 (201)
T ss_dssp GGC--CSCH----HHHHHHHHHH------TCEEEECCTTCHHHHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHh------CCeEEEEeCCCCCCHHHHHH
Confidence 221 1111 1122333333 34899999999999999754
No 114
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=7e-17 Score=143.44 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=95.0
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|+.|+|||||+++|+.... ... . ....+.+.. ....+......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~---------------------~------~~t~~~~~~-~~~~~~~~~~~ 52 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTF--RES---------------------Y------IPTVEDTYR-QVISCDKSICT 52 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC--CSS---------------------C------CCCSCEEEE-EEEEETTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC--CCC---------------------C------CCCccccEE-EEEEECCEEEE
Confidence 47899999999999999999953211 000 0 000111111 11112223457
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-----cCCceEEEEEEccCCCCCC
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-----~~i~~iivviNKiD~~~~~ 236 (475)
+.|+||||+.+|...+...+..+|++|+|+|+...... ......+..+.. .++| +++|+||+|+....
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~ 125 (172)
T 2erx_A 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSL------EELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSR 125 (172)
T ss_dssp EEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHH------HTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGC
T ss_pred EEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHH------HHHHHHHHHHHHHhCCCCCCC-EEEEEEcccccccc
Confidence 89999999999998888888999999999999875321 133333333333 2677 99999999984321
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+... .+...+.... .++++++||++|.|+.++
T Consensus 126 --~v~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 126 --EVQS----SEAEALARTW------KCAFMETSAKLNHNVKEL 157 (172)
T ss_dssp --CSCH----HHHHHHHHHH------TCEEEECBTTTTBSHHHH
T ss_pred --ccCH----HHHHHHHHHh------CCeEEEecCCCCcCHHHH
Confidence 1001 1112233333 347999999999999985
No 115
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.2e-17 Score=154.40 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=97.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++++|||||+++|+....... ....++.......+...+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~~~~~~ 59 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-------------------------------SKSTIGVEFATRTLEIEG 59 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------------------------------------CCSEEEEEEEETT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC-------------------------------CCCcccceeEEEEEEECC
Confidence 4568999999999999999999853221100 001112222223344444
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+..|...+...++.+|++|+|+|+..+.. | ......+..+... ++| +++|+||+|+..
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 132 (223)
T 3cpj_B 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS---Y---ENCNHWLSELRENADDNVA-VGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH---H---HHHHHHHHHHHHHCC--CE-EEEEECCGGGGG
T ss_pred EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 679999999999998888888899999999999987642 1 1233334444433 566 899999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. +... .++..+.+.. .++++++||++|.|+.+++.
T Consensus 133 ~~--~v~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 133 LR--AVPT----EESKTFAQEN------QLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp GC--CSCH----HHHHHHHHHT------TCEEEECCCC-CCCHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 11 1111 1222333333 35899999999999998643
No 116
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.71 E-value=1.2e-17 Score=155.33 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=97.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
...++|+++|+.++|||||+++|+.... . ......+..+.....+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~ 71 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF--N-----------------------------PKFITTVGIDFREKRVVYNA 71 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC--C-----------------------------CEEEEEEEEEEEEEEEEEEC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC--C-----------------------------cCCCCceeEEEEEEEEEECC
Confidence 4568999999999999999999842111 0 0001111222222222222
Q ss_pred -----------CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceE
Q 011910 159 -----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKL 223 (475)
Q Consensus 159 -----------~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~i 223 (475)
...+.|+||||+.+|...+...++.+|++|+|+|+...... ......+..+.. .++| +
T Consensus 72 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~------~~~~~~l~~i~~~~~~~~~p-i 144 (217)
T 2f7s_A 72 QGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSF------LNVRNWMSQLQANAYCENPD-I 144 (217)
T ss_dssp -------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHH------HHHHHHHHTCCCCCTTTCCE-E
T ss_pred ccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHH------HHHHHHHHHHHHhcCcCCCC-E
Confidence 56799999999999988888889999999999999875320 112222222211 3566 8
Q ss_pred EEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 224 ivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
++|+||+|+.... ... ..++..+.+.. .++++++||++|.|+.+++.
T Consensus 145 ilV~NK~Dl~~~~--~v~----~~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~~ 191 (217)
T 2f7s_A 145 VLIGNKADLPDQR--EVN----ERQARELADKY------GIPYFETSAATGQNVEKAVE 191 (217)
T ss_dssp EEEEECTTCGGGC--CSC----HHHHHHHHHHT------TCCEEEEBTTTTBTHHHHHH
T ss_pred EEEEECCcccccc--ccC----HHHHHHHHHHC------CCcEEEEECCCCCCHHHHHH
Confidence 9999999994311 101 12233344443 34799999999999999754
No 117
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=3.8e-17 Score=148.99 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=100.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|+.++|||||+++|+... +... +.. ..+... ...+...+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~--~~~~---------------------~~~------t~~~~~---~~~~~~~~ 63 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDA--FPEE---------------------YVP------TVFDHY---AVSVTVGG 63 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSS--CCCS---------------------CCC------SSCCCE---EEEEESSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------CCC------ccccee---EEEEEECC
Confidence 456899999999999999999995321 1100 000 001111 11233333
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHHc--CCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~~--~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+.+|...+...++.+|++|+|+|+..... | .... ..+..+... ++| +++|+||+|+..
T Consensus 64 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 136 (194)
T 2atx_A 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---F---QNVKEEWVPELKEYAPNVP-FLLIGTQIDLRD 136 (194)
T ss_dssp CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTCC-EEEEEECTTSTT
T ss_pred EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 678999999999998888888899999999999987632 1 1222 334444444 777 999999999954
Q ss_pred CCchHHHHH------HHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~------~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.....+.+. ...++...+.+..++ .+++++||++|.|+.+++.
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 185 (194)
T 2atx_A 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGA-----CCYVECSALTQKGLKTVFD 185 (194)
T ss_dssp CHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-----SCEEECCTTTCTTHHHHHH
T ss_pred cccchhhcccccCcccCHHHHHHHHHHcCC-----cEEEEeeCCCCCCHHHHHH
Confidence 210000000 001223334444433 2799999999999998643
No 118
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.71 E-value=5.4e-17 Score=146.40 Aligned_cols=153 Identities=20% Similarity=0.165 Sum_probs=97.5
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+.++|+++|+.++|||||+++|+... +.. .. ....+.+. ...+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~------------------------~~---~~t~~~~~---~~~~~~~ 62 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDE--FVE------------------------DY---EPTKADSY---RKKVVLD 62 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSC--CCC------------------------SC---CTTCCEEE---EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCC------------------------cC---CCccceEE---EEEEEEC
Confidence 3456899999999999999999995321 100 00 00011111 1223333
Q ss_pred C--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCC
Q 011910 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~ 232 (475)
+ ..+.|+||||+.+|...+...+..+|++++|+|+..... + ......+..+.. .++| +++|+||+|+
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 135 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---F---AATADFREQILRVKEDENVP-FLLVGNKSDL 135 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCCTTCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3 579999999999999888888899999999999987532 1 122222222222 2677 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... +... +++..+++.. .++++++||++|.|+.+++.
T Consensus 136 ~~~~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 136 EDKR--QVSV----EEAKNRAEQW------NVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp GGGC--CSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred cccC--ccCH----HHHHHHHHHc------CCeEEEeCCCCCCCHHHHHH
Confidence 4321 1111 2233344443 34799999999999998644
No 119
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.71 E-value=2.1e-17 Score=154.17 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=105.6
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
......+|+++|+.|+|||||+++|+..... .......|.+.......+..
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 61 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE-----------------------------KKYVATLGVEVHPLVFHTNR 61 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHT-----------------------------CEEETTTTEEEEEEEEEETT
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCccceeEEEEEEEECC
Confidence 3456689999999999999999986422110 00011245566555555555
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~~ 235 (475)
....+.|+||||+..|...+...++.+|++|+|+|+..+... ......+..+... ++| +|+|+||+|+...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTY------KNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHH------HTHHHHHHHHHHHSTTCC-EEEEEECTTSSSC
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCC-EEEEEECCccccc
Confidence 667899999999999987777788899999999999886431 1223333333332 677 9999999999533
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ..+...+.+.. .++++++||++|.|+.+++.
T Consensus 135 ~~--------~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 135 KV--------KAKSIVFHRKK------NLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp SS--------CGGGCCHHHHH------TCEEEECBGGGTBTTTHHHH
T ss_pred cc--------cHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 21 11223333433 35799999999999998754
No 120
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.70 E-value=2.7e-17 Score=148.97 Aligned_cols=148 Identities=24% Similarity=0.275 Sum_probs=100.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
+..+|+++|+.|+|||||+++|..... ......++|.+.....+...+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 54 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV-------------------------------YIGNWPGVTVEKKEGEFEYNGE 54 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSCCEEEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------cccCCCCeeccceEEEEEeCCc
Confidence 557999999999999999999943210 0111235565555566777889
Q ss_pred eEEEEeCCCCcCcHH-----H-Hhhcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 161 RFTILDAPGHKSYVP-----N-MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 161 ~~~liDtPGh~~f~~-----~-~~~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.++||||+..|.. . ....+ ..+|++++|+|+... ......+..+...+.| +++|+||+|+
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~p-iilv~nK~Dl 124 (188)
T 2wjg_A 55 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMDL 124 (188)
T ss_dssp EEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---------HHHHHHHHHHHTTTCC-EEEEEECHHH
T ss_pred EEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---------HHHHHHHHHHHhcCCC-EEEEEEhhhc
Confidence 999999999998831 1 11222 358999999998752 2445555666667888 8999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... .+...+..+.+.++ ++++++||++|.|+.+++.
T Consensus 125 ~~~~-------~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (188)
T 2wjg_A 125 AKSL-------GIEIDVDKLEKILG------VKVVPLSAAKKMGIEELKK 161 (188)
T ss_dssp HHHT-------TCCCCHHHHHHHHT------SCEEECBGGGTBSHHHHHH
T ss_pred cccc-------cchHHHHHHHHHhC------CCeEEEEecCCCCHHHHHH
Confidence 3210 01122333334443 4799999999999998643
No 121
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=8.3e-17 Score=148.66 Aligned_cols=164 Identities=13% Similarity=0.091 Sum_probs=99.8
Q ss_pred ccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEE
Q 011910 76 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 155 (475)
Q Consensus 76 ~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 155 (475)
-+......+|+++|+.|+|||||+++|+.... .... ....+.... ..+
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~---------------------------~~t~~~~~~---~~~ 66 (207)
T 2fv8_A 19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKDEF--PEVY---------------------------VPTVFENYV---ADI 66 (207)
T ss_dssp CGGGSEEEEEEEEECTTSSHHHHHHHHHHSSC--C----------------------------------CCEEE---EEE
T ss_pred ccccccCcEEEEECcCCCCHHHHHHHHhcCCC--CCcC---------------------------CCcccceEE---EEE
Confidence 34445668999999999999999999953211 1000 000111111 112
Q ss_pred eeCC--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccC
Q 011910 156 ETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMD 231 (475)
Q Consensus 156 ~~~~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD 231 (475)
...+ ..+.|+||||+.+|...+...+..+|++|+|+|+..... |. ......+..+... ++| +++|+||+|
T Consensus 67 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-iilv~nK~D 140 (207)
T 2fv8_A 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDS---LE--NIPEKWVPEVKHFCPNVP-IILVANKKD 140 (207)
T ss_dssp EETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHH---HH--HHHHTHHHHHHHHSTTCC-EEEEEECGG
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEchh
Confidence 3333 578999999999998888788899999999999987532 10 1112333444443 778 999999999
Q ss_pred CCCCCchHHHHHHH------HhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEI------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i------~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+.......+.+... ..+...+....+ ..+++++||++|.|+.+++.
T Consensus 141 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ-----AYDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp GGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-----CSEEEECCTTTCTTHHHHHH
T ss_pred hhccccchhhhhhcccCCCCHHHHHHHHHhcC-----CCEEEEeeCCCCCCHHHHHH
Confidence 94322111111110 011122223332 23799999999999998643
No 122
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.70 E-value=5.1e-17 Score=146.50 Aligned_cols=153 Identities=19% Similarity=0.197 Sum_probs=97.8
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+..+|+++|+.|+|||||+++|+... ... +. ....+... ...+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~------------------------~~---~~t~~~~~---~~~~~~~ 62 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKI--FVD------------------------DY---DPTIEDSY---LKHTEID 62 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCS------------------------CC---CTTCCEEE---EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCC--CCC------------------------CC---CCCcccee---EEEEEeC
Confidence 3456899999999999999999995321 100 00 00011111 2223333
Q ss_pred C--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCC
Q 011910 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~ 232 (475)
+ ..+.|+||||+..|.......++.+|++|+|+|+..+.. |. .....+..+. ..++| +++|+||+|+
T Consensus 63 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 135 (183)
T 3kkq_A 63 NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKAS---FE---HVDRFHQLILRVKDRESFP-MILVANKVDL 135 (183)
T ss_dssp TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTSSCCC-EEEEEECTTC
T ss_pred CcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECCCc
Confidence 4 456779999999998888888889999999999987632 11 2222222222 24677 8999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecc-cccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~-~g~gi~~l~~ 282 (475)
.... .... +++..+.+..+ ++++++||+ +|.|+.+++.
T Consensus 136 ~~~~--~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 136 MHLR--KVTR----DQGKEMATKYN------IPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp STTC--CSCH----HHHHHHHHHHT------CCEEEEBCSSSCBSHHHHHH
T ss_pred hhcc--CcCH----HHHHHHHHHhC------CeEEEeccCCCCCCHHHHHH
Confidence 4311 1111 22333444443 479999999 9999998643
No 123
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.70 E-value=6.2e-17 Score=143.35 Aligned_cols=151 Identities=18% Similarity=0.129 Sum_probs=81.9
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|++|+|||||+++|...... ......|.+.. ....+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~~~~-~~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG------------------------------PEAEAAGHTYD-RSIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEE-EEEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc------------------------------CCCCccccceE-EEEEECCEEEE
Confidence 468999999999999999998321100 00001222221 11222333467
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCCCCc
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 237 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~~~~ 237 (475)
+.++||||+..|.......++.+|++++|+|+..... | ......+..+.. .++| +++|+||+|+....
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~- 122 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGS---F---EKASELRVQLRRARQTDDVP-IILVGNKSDLVRSR- 122 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHHH---H---HHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSC-
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEecccccccc-
Confidence 8999999999998877778899999999999986532 1 123333333333 3677 89999999995321
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
....+ +...+.... .++++++||++|.|+.+++.
T Consensus 123 -~~~~~----~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 123 -EVSVD----EGRACAVVF------DCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp -CSCHH----HHHHHHHHT------TCEEEECBGGGTBSHHHHHH
T ss_pred -ccCHH----HHHHHHHHh------CCcEEEeccCCCCCHHHHHH
Confidence 11111 112223332 35899999999999998644
No 124
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=2.3e-17 Score=149.94 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=94.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
++.++|+++|+.++|||||+++|+.... .. .....++.+.....+...+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~ 66 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRF--PD-----------------------------RTEATIGVDFRERAVDIDG 66 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC--CS-----------------------------SCCCCCSCCEEEEEEEETT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCC--CC-----------------------------CCCCCcceEEEEEEEEECC
Confidence 4668999999999999999999853211 00 0011122222223333444
Q ss_pred --eeEEEEeCCCCcCcH-HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCC
Q 011910 160 --TRFTILDAPGHKSYV-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 232 (475)
Q Consensus 160 --~~~~liDtPGh~~f~-~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~ 232 (475)
..+.|+||||+.+|. ......++.+|++|+|+|+..... | ......+..+.. .++| +++|+||+|+
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 139 (189)
T 1z06_A 67 ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS---F---HSLPAWIEECKQHLLANDIP-RILVGNKCDL 139 (189)
T ss_dssp EEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHCCCSCCC-EEEEEECTTC
T ss_pred EEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 679999999999987 556666889999999999987532 1 122233333322 3677 9999999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccc---cccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTR 280 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g---~gi~~l 280 (475)
.... +... ++...+.... .++++++||++| .|+.++
T Consensus 140 ~~~~--~v~~----~~~~~~~~~~------~~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 140 RSAI--QVPT----DLAQKFADTH------SMPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp GGGC--CSCH----HHHHHHHHHT------TCCEEECCSSSGGGGSCHHHH
T ss_pred cccc--eeCH----HHHHHHHHHc------CCEEEEEeCCcCCcccCHHHH
Confidence 4321 1011 1222333333 347999999999 777664
No 125
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=1.2e-16 Score=145.10 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=88.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|+.|+|||||+++|+... ... .. ....+... ...+...+
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~------------------------~~---~~t~~~~~---~~~~~~~~ 66 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------EY---DPTIEDSY---RKQVVIDG 66 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSS--CCS------------------------CC---CTTCCEEE---EEEEEETT
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCC--Ccc------------------------cc---CCccceEE---EEEEEECC
Confidence 456899999999999999999995321 100 00 00011111 12233333
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 233 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~ 233 (475)
..+.|+||||+.+|...+...+..+|++++|+|+...... ......+..+.. .++| +++|+||+|+.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~ 139 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSF------ADINLYREQIKRVKDSDDVP-MVLVGNKCDLP 139 (190)
T ss_dssp EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHH------HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCS
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHH------HHHHHHHHHHHHHhCCCCCe-EEEEEECCcCC
Confidence 5699999999999988888888999999999999875321 122233333332 2677 99999999985
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
...... +++..+++..+ ++++++||++|.|+.+++.
T Consensus 140 ~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 140 TRTVDT-------KQAHELAKSYG------IPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp CCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred cccCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 422111 22233444443 4799999999999998644
No 126
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.9e-16 Score=144.68 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=96.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|++++|||||+++|+...- ... +. ...+.+.. ....+.....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~---------------------~~------~t~~~~~~-~~~~~~~~~~ 56 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF--RDT---------------------YI------PTIEDTYR-QVISCDKSVC 56 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC--CCT---------------------TS------CCCCEEEE-EEEEETTEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC--CCc---------------------cc------Ccccccee-EEEEECCEEE
Confidence 457999999999999999999953211 000 00 00111111 1112222345
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-----cCCceEEEEEEccCCCCC
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-----~~i~~iivviNKiD~~~~ 235 (475)
.+.|+||||+.+|...+...+..+|++|+|+|+..... + ......+..+.. .++| +++|+||+|+...
T Consensus 57 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~ 129 (199)
T 2gf0_A 57 TLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQS---L---EELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQR 129 (199)
T ss_dssp EEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSC
T ss_pred EEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCcc
Confidence 79999999999998888888899999999999987532 1 122233332322 2577 9999999999542
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
....+ +...+....+ ++++++||++|.|+.+++
T Consensus 130 ~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 130 EVDTR-------EAQAVAQEWK------CAFMETSAKMNYNVKELF 162 (199)
T ss_dssp SSCHH-------HHHHHHHHHT------CEEEECBTTTTBSHHHHH
T ss_pred ccCHH-------HHHHHHHHhC------CeEEEEecCCCCCHHHHH
Confidence 22211 1222333332 479999999999999864
No 127
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.69 E-value=2.3e-17 Score=158.21 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=100.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++|+|||||+++|++....... ....++|.......+.+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 70 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESK-----------------------------LGSQTLTKTCSKSQGSWGN 70 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC-----------------------------TTSCCCCCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccC-----------------------------CCCCceeeeeEEEEEEeCC
Confidence 45689999999999999999999643321110 0012245555555677789
Q ss_pred eeEEEEeCCCCcCcH-----------HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-----CCceE
Q 011910 160 TRFTILDAPGHKSYV-----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKL 223 (475)
Q Consensus 160 ~~~~liDtPGh~~f~-----------~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~-----~i~~i 223 (475)
..++||||||+.++. ..+...++.+|++|+|+|+.. .. .+....+..+... +.| .
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~-------~~~~~~~~~l~~~~~~~~~~~-~ 141 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YT-------SQDQQAAQRVKEIFGEDAMGH-T 141 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CC-------HHHHHHHHHHHHHHCGGGGGG-E
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CC-------HHHHHHHHHHHHHhCchhhcc-E
Confidence 999999999997762 222335678999999999985 21 3555555555554 567 6
Q ss_pred EEEEE-ccCCCCCCchHHHHHHHH----hhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 224 LLVVN-KMDDHTVNWSKERYDEIE----SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 224 ivviN-KiD~~~~~~~~~~~~~i~----~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+++| |+|+...... ..+. .++..++..++.... .+..+++||++|.|+.+++.
T Consensus 142 i~vv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~SA~~~~gv~~l~~ 200 (260)
T 2xtp_A 142 IVLFTHKEDLNGGSLM----DYMHDSDNKALSKLVAACGGRIC-AFNNRAEGSNQDDQVKELMD 200 (260)
T ss_dssp EEEEECGGGGTTCCHH----HHHHHCCCHHHHHHHHHTTTCEE-ECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEcccccCCccHH----HHHHhcchHHHHHHHHHhCCeEE-EecCcccccccHHHHHHHHH
Confidence 67777 9999533211 1111 122334444331100 01118999999999998754
No 128
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.69 E-value=5.6e-17 Score=149.16 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=76.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
....+|+++|+.|+|||||+++|+.....+... ....+..+.....+...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~ 68 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKD-----------------------------YAMTSGVEVVVAPVTIPD 68 (208)
T ss_dssp EEEEEEEEC---------------------------------------------------------------CEEEECTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCC-----------------------------CCCccceEEEEEEEEECC
Confidence 456899999999999999999985331111100 00011112223334444
Q ss_pred ---CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH------cCCceEEEEEEc
Q 011910 159 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNK 229 (475)
Q Consensus 159 ---~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~------~~i~~iivviNK 229 (475)
...+.|+||||+.+|...+...+..+|++|+|+|+..+.. | ......+..+.. .++| +++|+||
T Consensus 69 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK 141 (208)
T 2yc2_C 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES---F---ESCKAWFELLKSARPDRERPLR-AVLVANK 141 (208)
T ss_dssp SSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH---H---HHHHHHHHHHHHHCSCTTSCCE-EEEEEEC
T ss_pred cccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhhcccccCCc-EEEEEEC
Confidence 4689999999999999888888999999999999987642 1 133344444443 3667 9999999
Q ss_pred cCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccc-ccccccccc
Q 011910 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-GLNMKTRVD 282 (475)
Q Consensus 230 iD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~-g~gi~~l~~ 282 (475)
+|+.... .... .+++..+++..+ ++++++||++ |.|+.+++.
T Consensus 142 ~Dl~~~~-~~v~----~~~~~~~~~~~~------~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 142 TDLPPQR-HQVR----LDMAQDWATTNT------LDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp C--------CCC----HHHHHHHHHHTT------CEEEECCC-------CHHHH
T ss_pred cccchhh-ccCC----HHHHHHHHHHcC------CEEEEeccCCCCcCHHHHHH
Confidence 9994300 0001 122333444443 5899999999 999998754
No 129
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.69 E-value=1.4e-16 Score=141.54 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=88.0
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--C
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 159 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 159 (475)
..+|+++|++|+|||||+++|......... ....+.+.....+... .
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH-------------------------------EMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------------------CEEEEEEEETTEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc-------------------------------cCCCcCCeeeEEEEECCeE
Confidence 468999999999999999998532211000 0111122222223333 4
Q ss_pred eeEEEEeCCCCcCcHH-HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc----CCceEEEEEEccCCCC
Q 011910 160 TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~-~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~----~i~~iivviNKiD~~~ 234 (475)
..+.++||||+.+|.. .....++.+|++++|+|+..... | ......+..+... ++| +++|+||+|+..
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 123 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRS---F---SKVPETLLRLRAGRPHHDLP-VILVGNKSDLAR 123 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHH---H---HHHHHHHHHHHhcccCCCCC-EEEEeeCcchhh
Confidence 6788999999998865 33334678999999999987532 1 1233333333332 677 899999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. .... ++...+.+.. .++++++||++|.|+.+++.
T Consensus 124 ~~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 159 (169)
T 3q85_A 124 SR--EVSL----EEGRHLAGTL------SCKHIETSAALHHNTRELFE 159 (169)
T ss_dssp GC--CSCH----HHHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred cc--cCCH----HHHHHHHHHc------CCcEEEecCccCCCHHHHHH
Confidence 11 1111 2223333433 34899999999999998643
No 130
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.69 E-value=8.5e-17 Score=146.79 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=99.2
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+..+|+++|+.|+|||||+++|+... .... . ....+.+.. ..+...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~~------------------------~---~~t~~~~~~---~~~~~~ 67 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGE--IPTA------------------------Y---VPTVFENFS---HVMKYK 67 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSC--CCSS------------------------C---CCCSEEEEE---EEEEET
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCC--CCCc------------------------c---CCeeeeeeE---EEEEEC
Confidence 4566899999999999999999984321 1000 0 000111111 122333
Q ss_pred --CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcch-HHHHHHHHHc--CCceEEEEEEccCCC
Q 011910 159 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDH 233 (475)
Q Consensus 159 --~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t-~~~l~~~~~~--~i~~iivviNKiD~~ 233 (475)
...+.|+||||+..|...+...++.+|++|+|+|+..... |. .. ...+..+... ++| +++|+||+|+.
T Consensus 68 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 140 (194)
T 3reg_A 68 NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS---FD---NISTKWEPEIKHYIDTAK-TVLVGLKVDLR 140 (194)
T ss_dssp TEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTSE-EEEEEECGGGC
T ss_pred CEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 3557999999999998888888999999999999987632 11 11 2233333333 566 89999999985
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
....... ..+++..+.+..++. .++++||++|.|+.+++.
T Consensus 141 ~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~ 180 (194)
T 3reg_A 141 KDGSDDV----TKQEGDDLCQKLGCV-----AYIEASSVAKIGLNEVFE 180 (194)
T ss_dssp CTTTTCC----CHHHHHHHHHHHTCS-----CEEECBTTTTBSHHHHHH
T ss_pred cCCCCcc----cHHHHHHHHHhcCCC-----EEEEeecCCCCCHHHHHH
Confidence 3211111 122333445555432 499999999999998643
No 131
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=2e-17 Score=153.89 Aligned_cols=153 Identities=15% Similarity=0.126 Sum_probs=95.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
....+|+++|++|+|||||+++|+... ... ......+.+... ..+...
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~---------------------------~~~~t~~~~~~~--~~~~~~~ 57 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGR--FEK---------------------------NYNATVGAVNHP--VTFLDDQ 57 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCS--TTC---------------------------EEETTTTEEEEE--EEEEBTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCC--CCC---------------------------CCCCccceeeEE--EEEEeCC
Confidence 456899999999999999999884211 000 000011222211 112221
Q ss_pred C--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCC
Q 011910 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 233 (475)
Q Consensus 159 ~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~ 233 (475)
+ ..+.|+||||+.+|.......+..+|++|+|+|+..+... ......+..+.. .+.| +++|+||+|+.
T Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (218)
T 4djt_A 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC------QNLARWVKEFQAVVGNEAP-IVVCANKIDIK 130 (218)
T ss_dssp SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHH------HTHHHHHHHHHHHHCSSSC-EEEEEECTTCC
T ss_pred CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHH------HHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 2 6799999999999887777778899999999999987532 122233333332 3577 99999999984
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... . ........++... .++++++||++|.|+.+++.
T Consensus 131 ~~~--~----~~~~~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 131 NRQ--K----ISKKLVMEVLKGK------NYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp ----------CCHHHHHHHTTTC------CCEEEEEBTTTTBTTTHHHH
T ss_pred ccc--c----cCHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHH
Confidence 321 1 1111222233322 45899999999999999754
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.69 E-value=8e-17 Score=166.21 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=103.7
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
..++|+++|++|+|||||+++|+.....+ .....|.|.+.....+.+.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~------------------------------v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERAL------------------------------VSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECCCC------CCEEEEETTE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccc------------------------------cCCCCCCcCCceEEEEEECCE
Confidence 45799999999999999999995432110 011246666666677788899
Q ss_pred eEEEEeCCCCcCcHHH------------HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEE
Q 011910 161 RFTILDAPGHKSYVPN------------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~------------~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviN 228 (475)
.+.++||||+..+... ....+..+|++++|+|+..+.. .+..+....+...+.| +|+|+|
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~-------~~~~~i~~~l~~~~~~-~ilv~N 300 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT-------RQDQRMAGLMERRGRA-SVVVFN 300 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEEE
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEE
Confidence 9999999998544321 2345678999999999998753 2445555666677888 999999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+... .....+++.+.+...+...+ ..+++++||++|.|+.++++
T Consensus 301 K~Dl~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 301 KWDLVVH--REKRYDEFTKLFREKLYFID-----YSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp CGGGSTT--GGGCHHHHHHHHHHHCGGGT-----TSCEEECBTTTTBSHHHHHH
T ss_pred CccCCCc--hhhHHHHHHHHHHHHhccCC-----CCcEEEEECCCCCCHHHHHH
Confidence 9998432 12223444444444343332 35899999999999998754
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=3.2e-17 Score=169.06 Aligned_cols=145 Identities=22% Similarity=0.274 Sum_probs=95.5
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
++|+++|++|+|||||+++|+..... ......|+|.+.....+.+.+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~------------------------------~v~~~~g~T~d~~~~~~~~~~~~~ 53 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS------------------------------IVEDTPGVTRDRIYSSAEWLNYDF 53 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCCccceEEEEEEECCceE
Confidence 68999999999999999999432111 012236778877777788888999
Q ss_pred EEEeCCCCc--------CcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 163 TILDAPGHK--------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 163 ~liDtPGh~--------~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
.|+||||+. .|...+..++..||++|+|+|+..|.. ....+....++..+.| +++|+||+|+..
T Consensus 54 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~-------~~d~~~~~~l~~~~~p-vilv~NK~D~~~ 125 (436)
T 2hjg_A 54 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNKLDNTE 125 (436)
T ss_dssp EEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHTTCCSC-EEEEEECCCC--
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccCcc
Confidence 999999986 455566667889999999999999864 3455556666667888 999999999842
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. ..+..+. .+|+. +++++||++|.|+.+++
T Consensus 126 ~~----------~~~~~~~-~lg~~-----~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 126 MR----------ANIYDFY-SLGFG-----EPYPISGTHGLGLGDLL 156 (436)
T ss_dssp -------------CCCSSG-GGSSC-----CCEECBTTTTBTHHHHH
T ss_pred ch----------hhHHHHH-HcCCC-----CeEEEeCcCCCChHHHH
Confidence 11 1122222 34442 68999999999999863
No 134
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.69 E-value=1.6e-16 Score=156.16 Aligned_cols=161 Identities=13% Similarity=0.192 Sum_probs=105.1
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee-CCe
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETT 160 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~ 160 (475)
..+|+++|.+|+|||||+++|+...... .....+.|+......+.. .+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~------------------------------~~~~~~~Ti~~~~~~~~~~~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF------------------------------DTRRLGATIDVEHSHLRFLGNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG------------------------------GGGGCCCCCSEEEEEEEETTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc------------------------------cccCcCCccceEEEEEEeCCce
Confidence 3689999999999999999984321111 112355666666555554 578
Q ss_pred eEEEEeCCCCcCcHH-----HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCC
Q 011910 161 RFTILDAPGHKSYVP-----NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDH 233 (475)
Q Consensus 161 ~~~liDtPGh~~f~~-----~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~ 233 (475)
.+.||||||+.+|.. .....++.+|++|+|+|+........+ ......+..+... ++| +++|+||+|+.
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l---~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~ 128 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI---EIFAKALKQLRKYSPDAK-IFVLLHKMDLV 128 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHH---HHHHHHHHHHHHHCTTCE-EEEEEECGGGS
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHH---HHHHHHHHHHHHhCCCCe-EEEEEeccccc
Confidence 899999999999843 333445789999999999876421000 0111122222222 677 99999999994
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
..+.....++....++..+.+.+|+. .++++++||++ .|+.++
T Consensus 129 ~~~~r~~~~~v~~~~~~~~~~~~g~~---~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 129 QLDKREELFQIMMKNLSETSSEFGFP---NLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCC---SCEEEECCTTS-SHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHcCCC---CeEEEEeeecC-ChHHHH
Confidence 32222222334556677777777653 46899999999 676654
No 135
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.68 E-value=4.5e-17 Score=157.16 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=97.0
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|++|+|||||+++|...... .....|+|+......+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------------------------v~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------------------------VGNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-------------------------------CCSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCCcEEEEEEEEec-CCe
Confidence 468999999999999999999422100 001136666555555555 778
Q ss_pred EEEEeCCCCcCcHH------HHhhcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCC
Q 011910 162 FTILDAPGHKSYVP------NMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (475)
Q Consensus 162 ~~liDtPGh~~f~~------~~~~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~ 233 (475)
+.|+||||+..|.. .....+ ..+|++|+|+|++... .....+..+...++| +|+|+||+|+.
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---------~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 120 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---------RNLYLTTQLIETGIP-VTIALNMIDVL 120 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---------HHHHHHHHHHHTCSC-EEEEEECHHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---------hHHHHHHHHHhcCCC-EEEEEEChhhC
Confidence 99999999988742 111122 3699999999998631 334445556667999 99999999983
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
... .+......+.+.+| ++++++||++|.|+.+++
T Consensus 121 ~~~-------~~~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 121 DGQ-------GKKINVDKLSYHLG------VPVVATSALKQTGVDQVV 155 (272)
T ss_dssp HHT-------TCCCCHHHHHHHHT------SCEEECBTTTTBSHHHHH
T ss_pred CcC-------CcHHHHHHHHHHcC------CCEEEEEccCCCCHHHHH
Confidence 110 01112233333333 479999999999999864
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.68 E-value=9.7e-17 Score=149.13 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=83.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
.+..+|+++|..|+|||||+++|+...- .. +. ...+.......+...
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~------------------------~~------~~t~~~~~~~~~~~~~ 79 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAF--PE------------------------SY------TPTVFERYMVNLQVKG 79 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------------------------------------CCCCCEEEEEEEEETT
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCC--CC------------------------CC------CCccceeEEEEEEECC
Confidence 4568999999999999999999853210 00 00 000000111122333
Q ss_pred -CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHH--cCCceEEEEEEccCCCC
Q 011910 159 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 -~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~--~~i~~iivviNKiD~~~ 234 (475)
...+.|+||||+.+|...+...+..+|++|+|+|+..... |. ... ..+..+.. .++| +|+|+||+|+..
T Consensus 80 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 152 (214)
T 2j1l_A 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS---FD---NIFNRWYPEVNHFCKKVP-IIVVGCKTDLRK 152 (214)
T ss_dssp EEEEEEEEEC---------------CEEEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSCC-EEEEEECGGGGS
T ss_pred EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhhc
Confidence 3478999999999998888788889999999999987532 11 111 22333333 2677 999999999953
Q ss_pred CCchHHHHHH------HHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~------i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.....+.+.. ..++...+.+..++ .+++++||++|.|+.+++.
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~~ 201 (214)
T 2j1l_A 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGA-----VAYLECSARLHDNVHAVFQ 201 (214)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECBTTTTBSHHHHHH
T ss_pred cchhhhhhcccccCcccHHHHHHHHHhcCC-----CEEEEecCCCCCCHHHHHH
Confidence 3111110000 01222334444432 3899999999999998643
No 137
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.68 E-value=7.9e-17 Score=144.91 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=92.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|+.|+|||||+++|+... ...... .. .+.... ....+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~-----------------~t----------~~~~~~-~~~~~~~~~ 55 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYV-----------------PT----------VFDNFS-ANVVVNGAT 55 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSC--CC-------------------------------------CB-CCCC-----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCC-----------------Ce----------eeeeEE-EEEEECCEE
Confidence 345799999999999999999985322 111000 00 000000 001122234
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHHc--CCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~~--~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+.+|...+...++.+|++|+|+|+..... + .... ..+..+... ++| +++|+||+|+...
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 127 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDD- 127 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTC-
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEechhhhcC-
Confidence 567799999999998888888899999999999987532 1 1122 233333332 677 9999999998322
Q ss_pred chHHHHH------HHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 237 WSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 237 ~~~~~~~------~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
...... ...++...+.+..++ .+++++||++|.|+.+++
T Consensus 128 -~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 172 (182)
T 3bwd_D 128 -KQFFIDHPGAVPITTVQGEELKKLIGA-----PAYIECSSKSQENVKGVF 172 (182)
T ss_dssp -HHHHHHC--CCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHH
T ss_pred -cccccccccCCCCCHHHHHHHHHHcCC-----CEEEEEECCCCCCHHHHH
Confidence 110000 012223334444432 389999999999999864
No 138
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.68 E-value=2.9e-16 Score=147.36 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=97.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|.+|+|||||+++|+...-. .....+.|.......+...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-------------------------------VQSYSFTTKNLYVGHFDHKL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-------------------------------EECC-----CEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCcceeeeeeeeecCC
Confidence 34579999999999999999998432110 00012334444444556678
Q ss_pred eeEEEEeCCCCc------Cc---HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEE
Q 011910 160 TRFTILDAPGHK------SY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVN 228 (475)
Q Consensus 160 ~~~~liDtPGh~------~f---~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviN 228 (475)
..+.|+||||+. .. ...+......+|++|+|+|+..... |.. ....+.+..+... ++| +++|+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~~l~~~~~~~p-iilv~n 150 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LTI-KEQINLFYSIKSVFSNKS-IVIGFN 150 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SCH-HHHHHHHHHHHTCC-CCC-EEEEEE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cch-HHHHHHHHHHHHhhcCCc-EEEEEe
Confidence 899999999993 31 1122233567899999999987642 110 1123344444443 677 999999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+.... .........+..+....+ ..++++++||++|.|+.+++.
T Consensus 151 K~Dl~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gi~~l~~ 197 (228)
T 2qu8_A 151 KIDKCNMD---SLSIDNKLLIKQILDNVK----NPIKFSSFSTLTGVGVEQAKI 197 (228)
T ss_dssp CGGGCC-----CCCHHHHHHHHHHHHHCC----SCEEEEECCTTTCTTHHHHHH
T ss_pred CcccCCch---hhHHHHHHHHHHHHHhcC----CCceEEEEecccCCCHHHHHH
Confidence 99994321 111112223333433332 126899999999999998754
No 139
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.68 E-value=9.5e-17 Score=143.99 Aligned_cols=144 Identities=18% Similarity=0.180 Sum_probs=94.3
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|++|+|||||+++|........ ....+.|.+.....+...+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~ 53 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIV------------------------------TDIAGTTRDVLREHIHIDGMP 53 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCC------------------------------CSSTTCCCSCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccee------------------------------eCCCCceeceeeEEEEECCeE
Confidence 36899999999999999999943211000 011344444444556677888
Q ss_pred EEEEeCCCCcCcH---H-----HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEcc
Q 011910 162 FTILDAPGHKSYV---P-----NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKM 230 (475)
Q Consensus 162 ~~liDtPGh~~f~---~-----~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKi 230 (475)
+.++||||+.++. . .....++.+|++|+|+|+...... ...+.+..+... ++| +|+|+||+
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~-------~~~~~~~~~~~~~~~~~p-~ilv~NK~ 125 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAV-------DPAEIWPEFIARLPAKLP-ITVVRNKA 125 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCC-------SHHHHCHHHHHHSCTTCC-EEEEEECH
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH-------HHHHHHHHHHHhcccCCC-EEEEEECc
Confidence 9999999987642 1 122346789999999999876531 223333333332 577 89999999
Q ss_pred CCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+.... ..+... ...+++++||++|.|+.+++.
T Consensus 126 Dl~~~~-------------~~~~~~------~~~~~~~~SA~~g~gv~~l~~ 158 (172)
T 2gj8_A 126 DITGET-------------LGMSEV------NGHALIRLSARTGEGVDVLRN 158 (172)
T ss_dssp HHHCCC-------------CEEEEE------TTEEEEECCTTTCTTHHHHHH
T ss_pred cCCcch-------------hhhhhc------cCCceEEEeCCCCCCHHHHHH
Confidence 983211 001111 246899999999999998643
No 140
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=145.30 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=95.6
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+..+|+++|+.|+|||||+++|+... .... + ...+.......+..
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~---------------------~---------~~t~~~~~~~~~~~ 63 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTE---------------------Y---------IPTAFDNFSAVVSV 63 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC----------------------------------------CCSSEEEEEEEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC--CCCC---------------------C---------CCcccceeEEEEEE
Confidence 34566899999999999999999985321 1000 0 00000111122334
Q ss_pred CC--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHHc--CCceEEEEEEccCC
Q 011910 158 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~~--~i~~iivviNKiD~ 232 (475)
.+ ..+.|+||||+.+|...+...+..+|++|+|+|+..... | .... ..+..+... ++| +++|+||+|+
T Consensus 64 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 136 (201)
T 2q3h_A 64 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS---F---QNVSEKWVPEIRCHCPKAP-IILVGTQSDL 136 (201)
T ss_dssp TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCSSSC-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence 44 467799999999998777777889999999999987532 1 1111 233333332 677 8999999999
Q ss_pred CCCCchHHHHHHH---------HhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... .....+ .++...+.+..++ .+++++||++|.|+.+++.
T Consensus 137 ~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 137 REDV---KVLIELDKCKEKPVPEEAAKLLAEEIKA-----ASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp GGCH---HHHHHHHTTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred hhch---hhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEEecCCCCCHHHHHH
Confidence 4321 011010 1222333344332 3799999999999998744
No 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.67 E-value=7.5e-17 Score=160.08 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=98.2
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.++..+|+|+|++|+|||||+++|+... + .. ...|+......+...
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~--~-------------------------~~-------~~pT~~~~~~~~~~~ 207 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------VT-------TIPTIGFNVETVEYK 207 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSC--C-------------------------EE-------EEEETTEEEEEEEET
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCC--C-------------------------CC-------cccccceEEEEEecC
Confidence 3456789999999999999999882110 0 00 112444445567778
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHH-HHc---CCceEEEEEEccCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTL---GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~-~~~---~i~~iivviNKiD~~~ 234 (475)
+..+.|+||||+..|...+...+..+|++|+|+|+..... |. ...+.+..+ ... ++| +|+|+||+|+..
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~ 280 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VN---EAREELMRMLAEDELRDAV-LLVFANKQDLPN 280 (329)
T ss_dssp TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS---HH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH---HH---HHHHHHHHHHhhhccCCCe-EEEEEECccCCc
Confidence 8999999999999998888888899999999999976421 11 222222222 222 677 999999999954
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ..+++...+... ... ...++++++||++|.|+.++++
T Consensus 281 ~~----~~~~i~~~~~~~----~~~-~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 281 AM----NAAEITDKLGLH----SLR-HRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp CC----CHHHHHHHHTCT----TCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred cc----CHHHHHHHhchh----hhh-cCCCEEEEEECCCCcCHHHHHH
Confidence 32 122233222211 111 2357899999999999999643
No 142
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.67 E-value=4.7e-18 Score=156.01 Aligned_cols=151 Identities=20% Similarity=0.165 Sum_probs=92.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|+.++|||||+++|+.. ... ......++.+.....+...+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 79 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADD--TYT-----------------------------ESYISTIGVDFKIRTIELDG 79 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCC--CCC-----------------------------CHHHHHHCCSEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCcCCcccceEEEEEEEECC
Confidence 45689999999999999999988321 111 11112223333333444444
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~---~i~~iivviNKiD~~~ 234 (475)
..+.|+||||+..|...+...++.+|++|+|+|+..... | ......+..+... ++| +++|+||+|+..
T Consensus 80 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLTT 152 (199)
T ss_dssp EEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---H---HHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC-
T ss_pred EEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhccCCCC-EEEEEECccCCc
Confidence 679999999999998888888899999999999987642 1 1223333333332 566 899999999843
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.... ...+...+.... .++++++||++|.|+.++
T Consensus 153 ~~~v------~~~~~~~~~~~~------~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 153 KKVV------DYTTAKEFADSL------GIPFLETSAKNATNVEQS 186 (199)
T ss_dssp -CCC------CSCC-CHHHHTT------TCCBCCCCC---HHHHHH
T ss_pred cccC------CHHHHHHHHHHc------CCeEEEEECCCCCCHHHH
Confidence 2100 011223333333 357999999999999986
No 143
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.67 E-value=3.4e-16 Score=162.27 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=86.6
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|++|+|||||+++|+.....+ .....|.|.+.....+...+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------vs~~~gtT~d~~~~~i~~~g~ 281 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAI------------------------------VSHMPGTTRDYIEECFIHDKT 281 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCceEEEEEEEEEECCe
Confidence 34679999999999999999984321110 111256777777777888999
Q ss_pred eEEEEeCCCCcCcHHH--------HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-CCceEEEEEEccC
Q 011910 161 RFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMD 231 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~--------~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~-~i~~iivviNKiD 231 (475)
.+.||||||+.++... +...+..+|++|+|+|+..+... .+..+....+..+ +.| +|+|+||+|
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~------~~~~~~~~~l~~l~~~p-iIvV~NK~D 354 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD------DELTEIRELKAAHPAAK-FLTVANKLD 354 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEEEEETTTCSSG------GGHHHHHHHHHHCTTSE-EEEEEECTT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch------hhhHHHHHHHHhcCCCC-EEEEEECcC
Confidence 9999999999876432 23457789999999999987532 1222333333333 566 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+.... .... + .+...++ .+++++||++|.|++++++
T Consensus 355 l~~~~--~~~~----~----~l~~~~~-----~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 355 RAANA--DALI----R----AIADGTG-----TEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp SCTTT--HHHH----H----HHHHHHT-----SCEEECBTTTTBSHHHHHH
T ss_pred CCCcc--chhH----H----HHHhcCC-----CceEEEEECCCCCHHHHHH
Confidence 95432 1111 1 1222222 3799999999999998644
No 144
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.67 E-value=1.7e-16 Score=146.83 Aligned_cols=156 Identities=16% Similarity=0.126 Sum_probs=97.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee--
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 157 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-- 157 (475)
....+|+++|++|+|||||+++|+... .... .. ...+... ...+..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~--~~~~------------------------~~---~t~~~~~---~~~~~~~~ 54 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------YI---PTVFDNF---SANVAVDG 54 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSC--CCSS------------------------CC---CSSCCCE---EEEEECSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC--CCcc------------------------CC---CccceeE---EEEEEECC
Confidence 356899999999999999999985321 1100 00 0011111 112223
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHHc--CCceEEEEEEccCCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~~--~i~~iivviNKiD~~~ 234 (475)
....+.|+||||+..|...+...++.+|++|+|+|+..... | .... ..+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 127 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKAS---Y---ENVLKKWMPELRRFAPNVP-IVLVGTKLDLRD 127 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhh
Confidence 33689999999999998887778899999999999987532 1 1122 233444443 777 999999999843
Q ss_pred CCchHHHHHH-----HHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDE-----IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~-----i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. . .... ...+...+.+.+++ .+++++||++|.|+.+++.
T Consensus 128 ~~--~-~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 172 (212)
T 2j0v_A 128 DK--G-YLADHTNVITSTQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 172 (212)
T ss_dssp CH--H-HHHTCSSCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred Cc--c-ccccccCCCCHHHHHHHHHHcCC-----ceEEEccCCCCCCHHHHHH
Confidence 21 1 0000 12233344444442 3799999999999998743
No 145
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.67 E-value=4.3e-16 Score=145.21 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=97.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee--
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 157 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-- 157 (475)
.+..+|+++|..++|||||+.+|+. +.+... ....+..+.....+..
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~--~~f~~~-----------------------------~~~Tig~d~~~k~~~~~~ 59 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMY--DSFDNT-----------------------------YQATIGIDFLSKTMYLED 59 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH--SCCC---------------------------------------CEEEEEECSS
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHh--CCCCCC-----------------------------cCCccceEEEEEEEEecc
Confidence 4456899999999999999999843 222111 0011111111222223
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~ 234 (475)
....+.||||+|+++|...+....+.+|++++|.|...... |+ .....+..+.. .++| +|+|.||+|+..
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~S---f~---~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~ 132 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNS---FQ---QTTKWIDDVRTERGSDVI-IMLVGNKTDLAD 132 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSSE-EEEEEECTTCGG
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHH---HH---HHHHHHHHHHHhcCCCCe-EEEEeeccchHh
Confidence 34678999999999999888888899999999999887543 22 23333333332 3567 899999999832
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
. ..- ..++...+.++.+ ++++.+||++|.||.+++.
T Consensus 133 ~--r~V----~~~e~~~~a~~~~------~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 133 K--RQV----SIEEGERKAKELN------VMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp G--CCS----CHHHHHHHHHHHT------CEEEEEBTTTTBSHHHHHH
T ss_pred c--Ccc----cHHHHhhHHHHhC------CeeEEEeCCCCcCHHHHHH
Confidence 1 111 1123334445543 4799999999999999743
No 146
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.66 E-value=3.5e-16 Score=145.47 Aligned_cols=165 Identities=13% Similarity=0.046 Sum_probs=98.6
Q ss_pred cCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe
Q 011910 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (475)
Q Consensus 77 ~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 156 (475)
.......+|+++|..++|||||+++|+... ... ... ...+.+. .....+.
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~--~~~------------------------~~~---~t~~~~~-~~~~~~~ 71 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDC--YPE------------------------TYV---PTVFENY-TACLETE 71 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSC--CCS------------------------SCC---CCSEEEE-EEEEEC-
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCC--CCC------------------------CcC---CeeeeeE-EEEEEEC
Confidence 334566899999999999999999984321 110 000 0011111 1112233
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc--CCceEEEEEEccCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~--~i~~iivviNKiD~~~ 234 (475)
.....+.|+||||+..|.......++.+|++|+|+|+..... |. ......+..+... ++| +++|.||+|+..
T Consensus 72 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 145 (214)
T 3q3j_B 72 EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWRTEILDYCPSTR-VLLIGCKTDLRT 145 (214)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH---HH--HHHTHHHHHHHHHCTTSE-EEEEEECGGGGG
T ss_pred CEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 345679999999999998888888899999999999987642 11 1022333444443 677 899999999943
Q ss_pred CCchHHH------HHHHHhhhhhHhhhhcCcccCCeeEEEeecccccc-cccccc
Q 011910 235 VNWSKER------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 282 (475)
Q Consensus 235 ~~~~~~~------~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~g-i~~l~~ 282 (475)
....... .....++...+.+..++ .+++++||++|.| +.+++.
T Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~SA~~g~g~v~~lf~ 195 (214)
T 3q3j_B 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGA-----EIYLEGSAFTSEKSIHSIFR 195 (214)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCHHHHHHHHH
T ss_pred chhhhhhhcccccCccCHHHHHHHHHHcCC-----CEEEEeccCCCcccHHHHHH
Confidence 1000000 00011223344455443 2799999999998 998744
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.65 E-value=1.4e-16 Score=165.27 Aligned_cols=148 Identities=21% Similarity=0.247 Sum_probs=99.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
+..++|+++|++|+|||||+++|+..... ......|+|.+.....+.+.+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~------------------------------~v~~~~g~t~~~~~~~~~~~~ 70 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS------------------------------IVEDTPGVTRDRIYSSAEWLN 70 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTTCS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc------------------------------ccCCCCCcceeEEEEEEEECC
Confidence 45678999999999999999999432111 011235778877777788889
Q ss_pred eeEEEEeCCC--------CcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 160 TRFTILDAPG--------HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 160 ~~~~liDtPG--------h~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
..+.++|||| +..|...+..++..+|++|+|+|+..+.. ....+.+..++..+.| +|+|+||+|
T Consensus 71 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~-------~~d~~l~~~l~~~~~p-vilV~NK~D 142 (456)
T 4dcu_A 71 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNKLD 142 (456)
T ss_dssp SCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC-------HHHHHHHHHHTTCCSC-EEEEEECC-
T ss_pred ceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC-------hHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 9999999999 55666677777889999999999998864 4666777777777888 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+.... ..+.. +..+++. .++++||++|.|+.+++
T Consensus 143 ~~~~~----------~~~~e-~~~lg~~-----~~~~iSA~~g~gv~~L~ 176 (456)
T 4dcu_A 143 NTEMR----------ANIYD-FYSLGFG-----EPYPISGTHGLGLGDLL 176 (456)
T ss_dssp ------------------CC-SGGGSSS-----SEEECCTTTCTTHHHHH
T ss_pred chhhh----------hhHHH-HHHcCCC-----ceEEeecccccchHHHH
Confidence 83210 11111 1233443 46799999999999863
No 148
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.64 E-value=7.6e-16 Score=139.65 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=94.1
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+..+|+++|..|+|||||+++|+...- .. .... .+... ...+..
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~--~~------------------------~~~~----t~~~~---~~~~~~ 62 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTY--VQ------------------------EESP----EGGRF---KKEIVV 62 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSC--CC------------------------CCCT----TCEEE---EEEEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCC--CC------------------------CcCC----CcceE---EEEEEE
Confidence 345668999999999999999999853211 00 0000 01111 123334
Q ss_pred CC--eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccC
Q 011910 158 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 231 (475)
Q Consensus 158 ~~--~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD 231 (475)
.+ ..+.|+||||+..|. .++.+|++|+|+|+..... | ......+..+.. .++| +++|.||+|
T Consensus 63 ~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~D 130 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEIS---F---QTVYNYFLRLCSFRNASEVP-MVLVGTQDA 130 (184)
T ss_dssp TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHTTSCGGGSC-EEEEEECTT
T ss_pred CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 44 567889999999887 5567999999999987542 1 122333444433 3567 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+...+...... +++..+.+..+ .++++++||++|.|+.+++.
T Consensus 131 l~~~~~~~v~~----~~~~~~~~~~~-----~~~~~e~Sa~~~~gv~~lf~ 172 (184)
T 3ihw_A 131 ISAANPRVIDD----SRARKLSTDLK-----RCTYYETCATYGLNVERVFQ 172 (184)
T ss_dssp CBTTBCCCSCH----HHHHHHHHHTT-----TCEEEEEBTTTTBTHHHHHH
T ss_pred cccccccccCH----HHHHHHHHHcC-----CCeEEEecCCCCCCHHHHHH
Confidence 84211111111 22333444432 35899999999999998744
No 149
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=4.1e-16 Score=142.55 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=93.8
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+..+|+++|+.++|||||+++|+...- .. .. ....+... .....+...
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~--~~------------------------~~---~~t~~~~~-~~~~~~~~~ 74 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRF--IW------------------------EY---DPTLESTY-RHQATIDDE 74 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCC--CS------------------------CC---CTTCCEEE-EEEEEETTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCC--Cc------------------------cc---CCCCCceE-EEEEEECCE
Confidence 34568999999999999999999954211 00 00 00011111 111222223
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~ 234 (475)
...+.|+||||+.+ ...+...++.+|++|+|+|+..... | ......+..+.. .++| +++|+||+|+..
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~ 146 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGS---F---EEVLPLKNILDEIKKPKNVT-LILVGNKADLDH 146 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhhCCCCCc-EEEEEECccccc
Confidence 46799999999988 5555566788999999999987432 1 122333333322 4677 999999999843
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccc-ccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~-gi~~l~~ 282 (475)
.. +... ++...+.+.. .++++++||++|. |+.+++.
T Consensus 147 ~~--~v~~----~~~~~~~~~~------~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 147 SR--QVST----EEGEKLATEL------ACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp GC--CSCH----HHHHHHHHHH------TSEEEECCTTTCTTCHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHh------CCeEEEECCCcCCcCHHHHHH
Confidence 11 1111 1222233333 3479999999999 9998744
No 150
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.64 E-value=5.1e-16 Score=140.44 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=96.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|+.|+|||||+++|+.... .. ... ...+.... ....+....
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~--~~------------------------~~~---~t~~~~~~-~~~~~~~~~ 54 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCF--PE------------------------NYV---PTVFENYT-ASFEIDTQR 54 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC--CS------------------------SCC---CCSEEEEE-EEEECSSCE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCC--CC------------------------CCC---CccceeEE-EEEEECCEE
Confidence 4568999999999999999999853211 00 000 00111110 111222234
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcch-HHHHHHHHH--cCCceEEEEEEccCCCCCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t-~~~l~~~~~--~~i~~iivviNKiD~~~~~ 236 (475)
..+.|+||||+..|.......+..+|++|+|+|+..... |. .. ...+..+.. .+.| +++|.||+|+...
T Consensus 55 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~- 126 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTD- 126 (184)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGGGC-
T ss_pred EEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEEcchhhcc-
Confidence 679999999999998777778889999999999987532 11 11 122233333 2667 9999999999421
Q ss_pred chHHHHHHH---------HhhhhhHhhhhcCcccCCeeEEEeecc-cccccccccc
Q 011910 237 WSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~iipiSa~-~g~gi~~l~~ 282 (475)
.....++ .++...+.+..+ .++++++||+ +|.|+.+++.
T Consensus 127 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~gi~~l~~ 175 (184)
T 1m7b_A 127 --VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIFH 175 (184)
T ss_dssp --HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECBTTTBHHHHHHHHH
T ss_pred --hhhHhhhhhcccCCCCHHHHHHHHHHcC-----CcEEEEeeecCCCcCHHHHHH
Confidence 1111111 122333444443 2489999999 6899998643
No 151
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=139.69 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=93.4
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.....+|+++|.+|+|||||+++|......... ..+.+.+.....+..+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 68 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH-------------------------------EPENPEDTYERRIMVD 68 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGG-------------------------------TTTSCTTEEEEEEEET
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccC-------------------------------CCCcccceEEEEEEEC
Confidence 345679999999999999999998322111000 0111111111223333
Q ss_pred C--eeEEEEeCCCCcCcHH-HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccC
Q 011910 159 T--TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 231 (475)
Q Consensus 159 ~--~~~~liDtPGh~~f~~-~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD 231 (475)
+ ..+.|+||||+..|.. .....++.+|++|+|+|+..... |. .....+..+.. .++| +|+|.||+|
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 141 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKSD 141 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECTT
T ss_pred CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeechh
Confidence 3 4678899999988765 33344678999999999986432 11 23333433333 3677 999999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+.... ....+ +...+.+.. .++++++||++|.|+.+++.
T Consensus 142 l~~~~--~v~~~----~~~~~a~~~------~~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 142 LARSR--EVSLE----EGRHLAGTL------SCKHIETSAALHHNTRELFE 180 (195)
T ss_dssp CTTTC--CSCHH----HHHHHHHHT------TCEEEEEBTTTTBSHHHHHH
T ss_pred ccccC--CcCHH----HHHHHHHHh------CCEEEEEcCCCCCCHHHHHH
Confidence 94321 11111 222233333 34799999999999999743
No 152
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.43 E-value=2e-17 Score=152.30 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=98.3
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+..+|+++|.+|+|||||+++|+... ..... . .. .+... .....+..
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~-------~----------~t----------~~~~~-~~~~~~~~ 75 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEY-------I----------PT----------VFDNY-SANVMVDG 75 (204)
Confidence 34567899999999999999999985321 11000 0 00 00000 00111222
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHHc--CCceEEEEEEccCCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~~--~i~~iivviNKiD~~~ 234 (475)
....+.|+||||+.+|.......++.+|++|+|+|+..+.. +. ... ..+..+... ++| +++|+||+|+..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~ 148 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 148 (204)
Confidence 34567799999999998888888899999999999987642 11 221 233333333 677 899999999943
Q ss_pred CCchHHHH------HHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~------~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.....+.+ ....++...+.+..++ .+++++||++|.|+.+++.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~ 197 (204)
T 3th5_A 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 197 (204)
Confidence 21111100 0111222233333321 2789999999999998754
No 153
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.63 E-value=7.2e-16 Score=159.93 Aligned_cols=146 Identities=25% Similarity=0.285 Sum_probs=101.6
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCee
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 161 (475)
..+|+++|.+|+|||||+++|+.....+. ....|.|.+.....+...+..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~v------------------------------s~~~gTT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIV------------------------------TDIPGTTRDVISEEIVIRGIL 292 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCC------------------------------CCSSCCSSCSCCEEEEETTEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCcc------------------------------CCCCCeeeeeEEEEEecCCeE
Confidence 36899999999999999999964422111 112456666666777788999
Q ss_pred EEEEeCCCCc-CcH--------HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 162 FTILDAPGHK-SYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 162 ~~liDtPGh~-~f~--------~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
+.|+||||+. .+. ..+...+..+|++|+|+|+..+.. .+..+.+..+ .+.| +|+|+||+|+
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~il~~l--~~~p-iivV~NK~DL 362 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD-------EEDRKILERI--KNKR-YLVVINKVDV 362 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC-------HHHHHHHHHH--TTSS-EEEEEEECSS
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC-------HHHHHHHHHh--cCCC-EEEEEECccc
Confidence 9999999998 653 334556789999999999988743 1233333333 3667 8999999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .. .+++ ..++ +. ..+++++||++|.|+++++.
T Consensus 363 ~~~-~~---~~~~----~~~~---~~----~~~~i~iSAktg~Gi~eL~~ 397 (482)
T 1xzp_A 363 VEK-IN---EEEI----KNKL---GT----DRHMVKISALKGEGLEKLEE 397 (482)
T ss_dssp CCC-CC---HHHH----HHHH---TC----STTEEEEEGGGTCCHHHHHH
T ss_pred ccc-cC---HHHH----HHHh---cC----CCcEEEEECCCCCCHHHHHH
Confidence 532 11 1122 2221 11 35799999999999998754
No 154
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.63 E-value=8.6e-16 Score=146.22 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=100.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++|+|||||+++|+......... ...|.|.......+.+.+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~~ 69 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRL-----------------------------GATSVTRACTTGSRRWDK 69 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccC-----------------------------CCCCccccEEEEEEEECC
Confidence 456899999999999999999996433221100 012455555556677889
Q ss_pred eeEEEEeCCCC--------cCcHHHHhhcc----ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc------CCc
Q 011910 160 TRFTILDAPGH--------KSYVPNMISGA----SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVT 221 (475)
Q Consensus 160 ~~~~liDtPGh--------~~f~~~~~~~~----~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~------~i~ 221 (475)
..++|+||||. ..|...+..++ ..+|++|+|+|+.. .. ......+..+... +.|
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~-------~~~~~~~~~l~~~~~~~~~~~~ 141 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FT-------AQDQQAVRQVRDMFGEDVLKWM 141 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CC-------HHHHHHHHHHHHHHCGGGGGGE
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CC-------HHHHHHHHHHHHHhChhhhccE
Confidence 99999999997 55666665555 89999999999974 21 3455555555553 666
Q ss_pred eEEEEEEccCCCCCCchHHHHHHHH-----hhhhhHhhhhcCcccCCeeEEEeeccc-----ccccccccc
Q 011910 222 KLLLVVNKMDDHTVNWSKERYDEIE-----SKMTPFLKASGYNVKKDVQFLPISGLM-----GLNMKTRVD 282 (475)
Q Consensus 222 ~iivviNKiD~~~~~~~~~~~~~i~-----~~l~~~l~~~~~~~~~~~~iipiSa~~-----g~gi~~l~~ 282 (475)
+|+|.||+|+...+ +++.. ..++.+++.+|. +++++++.. +.|+.+|+.
T Consensus 142 -iilv~nK~Dl~~~~-----~~~~l~~~~~~~l~~l~~~~g~------~~~~~~~~~~~~~~~~~v~~Ll~ 200 (247)
T 3lxw_A 142 -VIVFTRKEDLAGGS-----LHDYVSNTENRALRELVAECGG------RVCAFDNRATGREQEAQVEQLLG 200 (247)
T ss_dssp -EEEEECGGGGTTCC-----HHHHHHHCCCHHHHHHHHHTTT------CEEECCTTCCHHHHHHHHHHHHH
T ss_pred -EEEEEchHhcCCCC-----HHHHHhhcccHHHHHHHHHcCC------eEEEEeCCCCccccHHHHHHHHH
Confidence 89999999995432 22222 335666666653 355555433 578887643
No 155
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=138.09 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=91.9
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+..+|+++|..++|||||+++|+... ... +.. ...+.+.. ....+...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~------------------------~~~---~t~~~~~~-~~~~~~~~ 67 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKR--FIS------------------------EYD---PNLEDTYS-SEETVDHQ 67 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSS--CCS------------------------CCC---TTCCEEEE-EEEEETTE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCC--CCc------------------------ccC---CCccceee-EEEEECCE
Confidence 3456899999999999999999995321 100 000 00111111 11122223
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH------cCCceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~------~~i~~iivviNKiD~ 232 (475)
...+.|+||||+..|.. +...++.+|++|+|+|+..... | ......+..+.. .++| +|+|+||+|+
T Consensus 68 ~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 139 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQS---F---DSSSSYLELLALHAKETQRSIP-ALLLGNKLDM 139 (187)
T ss_dssp EEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGG
T ss_pred EEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhhccCCCCC-EEEEEECcch
Confidence 46788999999998865 3456788999999999986532 1 122333333333 3777 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeec-ccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG-LMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa-~~g~gi~~l~~ 282 (475)
.... +.. .++...+.+..+ ++++++|| ++|.|+.+++.
T Consensus 140 ~~~~--~v~----~~~~~~~~~~~~------~~~~e~Sa~~~g~gv~~lf~ 178 (187)
T 3c5c_A 140 AQYR--QVT----KAEGVALAGRFG------CLFFEVSACLDFEHVQHVFH 178 (187)
T ss_dssp GGGC--SSC----HHHHHHHHHHHT------CEEEECCSSSCSHHHHHHHH
T ss_pred hhcC--ccC----HHHHHHHHHHcC------CcEEEEeecCccccHHHHHH
Confidence 3211 111 122333444443 47999999 89999998643
No 156
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.62 E-value=9.5e-16 Score=141.61 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=96.7
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
.....+|+++|..++|||||+++|..... .. .. ....+... .....+...
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~------------------------~~---~~t~~~~~-~~~~~~~~~ 74 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCF--PE------------------------NY---VPTVFENY-TASFEIDTQ 74 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCC--CS------------------------SC---CCCSEEEE-EEEEESSSS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCC--CC------------------------Cc---CCccceeE-EEEEEECCE
Confidence 34568999999999999999999953211 00 00 00011111 011122223
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcch-HHHHHHHHH--cCCceEEEEEEccCCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t-~~~l~~~~~--~~i~~iivviNKiD~~~~ 235 (475)
...+.|+||||+.+|.......++.+|++|+|+|+..... |. .. ...+..+.. .++| +|+|.||+|+...
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 147 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTD 147 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGGGC
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEechhhccc
Confidence 4679999999999998777777889999999999987532 11 11 222233333 2566 9999999999421
Q ss_pred CchHHHHHHH---------HhhhhhHhhhhcCcccCCeeEEEeecc-cccccccccc
Q 011910 236 NWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~~iipiSa~-~g~gi~~l~~ 282 (475)
. ....++ .++...+.+.++ ..+++++||+ +|.|+.+++.
T Consensus 148 ~---~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~gv~~lf~ 196 (205)
T 1gwn_A 148 V---STLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIFH 196 (205)
T ss_dssp H---HHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECCTTTCHHHHHHHHH
T ss_pred h---hhhhhhcccccCCCCHHHHHHHHHHcC-----CCEEEEeeeccCCcCHHHHHH
Confidence 1 111111 122333444443 2489999999 6899998643
No 157
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.62 E-value=1.7e-15 Score=158.80 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=103.7
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
..+.++|+++|.+|+|||||+++|+.... . . ...|+......+...
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~--~-------------------------~-------~~~T~~~~~~~~~~~ 364 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQS--V-------------------------T-------TIPTVGFNVETVTYK 364 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSC--C-------------------------C-------CCCCSSEEEEEEESS
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCC--C-------------------------C-------cCCccceeEEEEEeC
Confidence 34568999999999999999999943210 0 0 112344444557778
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~~ 234 (475)
+..+.|+||||+..|...+...+..+|++|+|+|+..... | ......+..+.. .++| +|+|+||+|+..
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---I---DEARQELHRIINDREMRDAI-ILIFANKQDLPD 437 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhH---H---HHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCc
Confidence 8999999999999998888888999999999999987631 1 122222222222 3677 999999999954
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. ..+++...+.... . ....++++++||++|.|+.++++
T Consensus 438 ~~----~~~~~~~~~~~~~----~-~~~~~~~~~~SA~~g~gi~~l~~ 476 (497)
T 3lvq_E 438 AM----KPHEIQEKLGLTR----I-RDRNWYVQPSCATSGDGLYEGLT 476 (497)
T ss_dssp CC----CHHHHHHHTTCTT----C-CSSCEEEEECBTTTTBTHHHHHH
T ss_pred CC----CHHHHHHHhchhh----h-hcCCeEEEEEECCCCCCHHHHHH
Confidence 22 1122322221111 1 12356899999999999999644
No 158
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.62 E-value=1.8e-15 Score=135.65 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=89.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+..+|+++|..++|||||+++|+...- .. . ....+... ...+...+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~--~~-------------------------~---~~t~~~~~---~~~~~~~~ 51 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSY--QV-------------------------L---EKTESEQY---KKEMLVDG 51 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCC--CC-------------------------C---SSCSSSEE---EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--CC-------------------------c---CCCcceeE---EEEEEECC
Confidence 3567999999999999999999943211 00 0 00011111 11223333
Q ss_pred --eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH------cCCceEEEEEEccC
Q 011910 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 231 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~------~~i~~iivviNKiD 231 (475)
..+.|+||||+..+ ..++.+|++|+|+|+..... | ......+..+.. .++| +++|.||+|
T Consensus 52 ~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 119 (178)
T 2iwr_A 52 QTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENS---F---QAVSRLHGQLSSLRGEGRGGLA-LALVGTQDR 119 (178)
T ss_dssp EEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHCSSSCCCE-EEEEEECTT
T ss_pred EEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 56899999999873 34567999999999987532 1 122222212222 2567 899999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+..........+ ++..+.+..+ .++++++||++|.|+.+++.
T Consensus 120 l~~~~~~~v~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~lf~ 161 (178)
T 2iwr_A 120 ISASSPRVVGDA----RARALXADMK-----RCSYYETXATYGLNVDRVFQ 161 (178)
T ss_dssp CBTTBCCCSCHH----HHHHHHHHHS-----SEEEEEEBTTTTBTHHHHHH
T ss_pred ccccccCcCCHH----HHHHHHHhhc-----CCeEEEEeccccCCHHHHHH
Confidence 832110111111 2222333321 46899999999999998754
No 159
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.62 E-value=3.7e-16 Score=141.46 Aligned_cols=155 Identities=21% Similarity=0.285 Sum_probs=89.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|++|+|||||+++|+... .. .....|+|....... .. .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~-----------------------------~~~~~~~t~~~~~~~--~~--~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VR-----------------------------RGKRPGVTRKIIEIE--WK--NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CS-----------------------------SSSSTTCTTSCEEEE--ET--TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--Cc-----------------------------cCCCCCccceeEEEe--cC--CE
Confidence 589999999999999999995321 10 001123333322222 22 78
Q ss_pred EEEeCCCC-----------cCcHHHHh---hc-cccCCEEEEEEecCCCccc-ccc---CCCcchHHHHHHHHHcCCceE
Q 011910 163 TILDAPGH-----------KSYVPNMI---SG-ASQADIGVLVISARKGEFE-TGF---EKGGQTREHVMLAKTLGVTKL 223 (475)
Q Consensus 163 ~liDtPGh-----------~~f~~~~~---~~-~~~~D~~vlVVda~~g~~e-~~~---~~~~~t~~~l~~~~~~~i~~i 223 (475)
.++||||+ ..|...+. .. +..+++++.|+|+.....- ..+ ....+..+.+..+...++| +
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-i 125 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-T 125 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-E
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-e
Confidence 99999994 34433332 22 4557788888886532100 000 0001233444555667888 9
Q ss_pred EEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcc-cCCeeEEEeecccccccccccc
Q 011910 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 224 ivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-~~~~~iipiSa~~g~gi~~l~~ 282 (475)
++|+||+|+... ..+ .+..+.+.+++.. ....+++++||++|.|+.+++.
T Consensus 126 ilv~nK~Dl~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 176 (190)
T 2cxx_A 126 IVAVNKLDKIKN--VQE-------VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKN 176 (190)
T ss_dssp EEEEECGGGCSC--HHH-------HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHH
T ss_pred EEEeehHhccCc--HHH-------HHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHH
Confidence 999999999432 111 2223333333310 0023689999999999998644
No 160
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.61 E-value=8.3e-16 Score=158.79 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=90.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
...+|+++|++|+|||||+++|+.....+.. ...|.|.+.....+..++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~------------------------------~~~gtT~d~~~~~i~~~g~ 272 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT------------------------------DLPGTTRDVVESQLVVGGI 272 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCS------------------------------CCTTCCHHHHHHEEEETTE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccccc------------------------------CCCCeeEEEEEEEEEECCE
Confidence 3467999999999999999999654332111 0134455555556667889
Q ss_pred eEEEEeCCCCcCcHHH--------HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 161 RFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~--------~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.|+||||+.++... ....+..+|++|+|+|+..+.. .+..+.+..+ ...| +|+|+||+|+
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~-------~~~~~i~~~l--~~~p-iivV~NK~Dl 342 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWT-------TGDQEIYEQV--KHRP-LILVMNKIDL 342 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEEEEETTTCSC-------HHHHHHHHHH--TTSC-EEEEEECTTS
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCC-------HHHHHHHHhc--cCCc-EEEEEECCCC
Confidence 9999999999776432 3335678999999999998743 2334444333 2356 8999999999
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
...... ..+. .+. ...+++++||++|.|++++++
T Consensus 343 ~~~~~~--------~~~~----~~~----~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 343 VEKQLI--------TSLE----YPE----NITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp SCGGGS--------TTCC----CCT----TCCCEEEEBTTTTBSHHHHHH
T ss_pred Ccchhh--------HHHH----Hhc----cCCcEEEEECCCCCCHHHHHH
Confidence 533210 0111 111 245899999999999998754
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.60 E-value=4.9e-15 Score=148.66 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=95.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCe
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 160 (475)
..+.|+++|++|+|||||+++|...... .+...+.|.+.....+.+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~-------------------------------~~~~~~~T~d~~~~~i~~~g~ 226 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQK-------------------------------VDTKLFTTMSPKRYAIPINNR 226 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCcc-------------------------------ccCCcccccCCEEEEEEECCE
Confidence 3446999999999999999999432110 011234565555666777888
Q ss_pred eEEEEeCCCCcCc--------HHHHhhccccCCEEEEEEecCCCc--cccccCCCcchHHHHHHHHH---cCCceEEEEE
Q 011910 161 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGE--FETGFEKGGQTREHVMLAKT---LGVTKLLLVV 227 (475)
Q Consensus 161 ~~~liDtPGh~~f--------~~~~~~~~~~~D~~vlVVda~~g~--~e~~~~~~~~t~~~l~~~~~---~~i~~iivvi 227 (475)
.+.++||||+... ...+...+..+|++++|+|+..+. .. .+.......+.. .+.| +|+|.
T Consensus 227 ~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~------~~~~~~~~~L~~l~~~~~p-~ilV~ 299 (364)
T 2qtf_A 227 KIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI------ETLQSSFEILREIGVSGKP-ILVTL 299 (364)
T ss_dssp EEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH------HHHHHHHHHHHHHTCCSCC-EEEEE
T ss_pred EEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH------HHHHHHHHHHHHhCcCCCC-EEEEE
Confidence 9999999997332 233455678999999999998764 21 122222333333 3567 89999
Q ss_pred EccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 228 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 228 NKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
||+|+.... . ......+..+...++. ...+++|+||++|.|+.++.+
T Consensus 300 NK~Dl~~~~-~----~~~~~~~~~l~~~l~~---~~~~~~~~SA~~g~gi~~L~~ 346 (364)
T 2qtf_A 300 NKIDKINGD-L----YKKLDLVEKLSKELYS---PIFDVIPISALKRTNLELLRD 346 (364)
T ss_dssp ECGGGCCSC-H----HHHHHHHHHHHHHHCS---CEEEEEECBTTTTBSHHHHHH
T ss_pred ECCCCCCch-H----HHHHHHHHHHHHHhcC---CCCcEEEEECCCCcCHHHHHH
Confidence 999995432 1 1112222222233211 134789999999999998644
No 162
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.60 E-value=6.6e-16 Score=153.51 Aligned_cols=154 Identities=19% Similarity=0.160 Sum_probs=94.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
+....|+++|.+|+|||||+++|......+ ......|.......+.+.+
T Consensus 156 k~la~V~lvG~~nvGKSTLln~L~~~~~~i-------------------------------~~~~ftTl~p~~g~v~~~~ 204 (342)
T 1lnz_A 156 KVLADVGLVGFPSVGKSTLLSVVSSAKPKI-------------------------------ADYHFTTLVPNLGMVETDD 204 (342)
T ss_dssp ECCCCEEEESSTTSSHHHHHHHSEEECCEE-------------------------------SSTTSSCCCCCEEEEECSS
T ss_pred hhcCeeeeeCCCCCCHHHHHHHHHcCCCcc-------------------------------ccCCccccCceEEEEEeCC
Confidence 345689999999999999999983211100 0012233333334455554
Q ss_pred -eeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-----cCCceEEEE
Q 011910 160 -TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 226 (475)
Q Consensus 160 -~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-----~~i~~iivv 226 (475)
..+.|+||||+.. +....++.+..+|++|+|||++.......+ ......+..+.. .+.| +++|
T Consensus 205 ~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~---~~~~~~~~eL~~~~~~l~~~p-~ilV 280 (342)
T 1lnz_A 205 GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY---DDYLTINQELSEYNLRLTERP-QIIV 280 (342)
T ss_dssp SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH---HHHHHHHHHHHHSCSSTTTSC-BCBE
T ss_pred CceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH---HHHHHHHHHHHHhhhhhcCCC-EEEE
Confidence 7899999999633 345555566779999999999752100001 123334444444 2567 8899
Q ss_pred EEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 227 iNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+||+|+... .+..+. +.+.++. ..+++++||++|.|+.+++.
T Consensus 281 ~NK~Dl~~~---~e~~~~-------l~~~l~~----~~~v~~iSA~tg~gi~eL~~ 322 (342)
T 1lnz_A 281 ANKMDMPEA---AENLEA-------FKEKLTD----DYPVFPISAVTREGLRELLF 322 (342)
T ss_dssp EECTTSTTH---HHHHHH-------HHHHCCS----CCCBCCCSSCCSSTTHHHHH
T ss_pred EECccCCCC---HHHHHH-------HHHHhhc----CCCEEEEECCCCcCHHHHHH
Confidence 999999421 112222 2222211 25799999999999999754
No 163
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.60 E-value=3.2e-15 Score=144.47 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=85.2
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 159 (475)
...+|+++|++|+|||||+++|+......... . ........++++......+...+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-------------------~----~~~~~~~~t~~~~~~~~~~~~~~~ 63 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY-------------------P----GPSHRIKKTVQVEQSKVLIKEGGV 63 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--C
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCC-------------------C----CcccccCCceEEEEEEEEEecCCe
Confidence 35799999999999999999984321110000 0 00000123333444444444444
Q ss_pred -eeEEEEeCCCCcCcHHH------H--------hhcc-------------ccCCEEEEEEecCC-CccccccCCCcchHH
Q 011910 160 -TRFTILDAPGHKSYVPN------M--------ISGA-------------SQADIGVLVISARK-GEFETGFEKGGQTRE 210 (475)
Q Consensus 160 -~~~~liDtPGh~~f~~~------~--------~~~~-------------~~~D~~vlVVda~~-g~~e~~~~~~~~t~~ 210 (475)
..++|+||||+.++... . ...+ ..+|+++++|++.. +.. ....+
T Consensus 64 ~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-------~~d~~ 136 (274)
T 3t5d_A 64 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-------PLDIE 136 (274)
T ss_dssp CEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-------HHHHH
T ss_pred EEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-------HHHHH
Confidence 48999999998443111 0 0011 13779999997654 532 35555
Q ss_pred HHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 211 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 211 ~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.+..+.. ++| +|+|+||+|+.. .......++.+...+... .++++++||.+|.|+.++.
T Consensus 137 ~l~~l~~-~~p-vi~V~nK~D~~~----~~e~~~~~~~i~~~l~~~------~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 137 FMKRLHE-KVN-IIPLIAKADTLT----PEECQQFKKQIMKEIQEH------KIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp HHHHHTT-TSC-EEEEESSGGGSC----HHHHHHHHHHHHHHHHHT------TCCCCCC-----------C
T ss_pred HHHHHhc-cCC-EEEEEeccCCCC----HHHHHHHHHHHHHHHHHc------CCeEEcCCCCCChhHHHHH
Confidence 5655555 788 999999999842 344555556666666654 3468999999999999863
No 164
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.59 E-value=3.6e-15 Score=147.50 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=98.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|.+|+|||||+++|.... +... ..+.+.......+...+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 200 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNA--FPGE------------------------------YIPTVFDNYSANVMVDG 200 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSC--CCCS------------------------------CCCCSEEEEEEEEEETT
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCC--CCcc------------------------------cCCcccceeEEEEEECC
Confidence 345789999999999999999984321 1100 01111111122334444
Q ss_pred e--eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHHc--CCceEEEEEEccCCCC
Q 011910 160 T--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 ~--~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~~--~i~~iivviNKiD~~~ 234 (475)
. .+.|+||||+..|.......+..+|++|+|+|+..+... .... ..+..+... ++| +++|+||+|+..
T Consensus 201 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 201 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF------HHVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 273 (332)
T ss_dssp EEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHH------HHHHHTHHHHHHHHCTTSC-EEEEEECHHHHT
T ss_pred EEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHH------HHHHHHHHHHHHhhCCCCc-EEEEEEchhccc
Confidence 4 466999999999988888888999999999999876421 0111 223334333 677 999999999843
Q ss_pred CCchHHHHHH------HHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 235 VNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 235 ~~~~~~~~~~------i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.......+.. ...+...+.+..++ .+++++||++|.|+.+++.
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 322 (332)
T 2wkq_A 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 322 (332)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred ccchhhhccccccccccHHHHHHHHHHcCC-----cEEEEecCCCCcCHHHHHH
Confidence 2111111110 01122333444332 3899999999999998643
No 165
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=2e-15 Score=140.19 Aligned_cols=150 Identities=13% Similarity=0.156 Sum_probs=86.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++|+|||||+++|+....... .. ....++.. ....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-----------------------~~-------~~~~~~~~-----~~~~ 54 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----------------------VV-------SQEPLSAA-----DYDG 54 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-----------------------CC-------CSSCEEET-----TGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-----------------------ee-------ecCceEEE-----EeeC
Confidence 4567999999999999999999953221000 00 00111111 1156
Q ss_pred eeEEEEeCCCCcCcHHHHhhcccc----CCEEEEEEecC-CCccccccCCCcchHHHHHHHHH-------cCCceEEEEE
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQ----ADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVV 227 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~----~D~~vlVVda~-~g~~e~~~~~~~~t~~~l~~~~~-------~~i~~iivvi 227 (475)
..+.|+||||+..|...+...+.. +|++|+|+|+. .... | ....+.+..+.. .++| +++|+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 127 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK---L---TTTAEFLVDILSITESSCENGID-ILIAC 127 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTC---C---HHHHHHHHHHHHHHHHHSTTCCC-EEEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHH---H---HHHHHHHHHHHhcccccccCCCC-EEEEE
Confidence 789999999999997776666655 89999999998 2211 1 123333332222 3677 99999
Q ss_pred EccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccc
Q 011910 228 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 277 (475)
Q Consensus 228 NKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi 277 (475)
||+|+..........+.+.+++..+.... ..+++++||++|.+-
T Consensus 128 nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 128 NKSELFTARPPSKIKDALESEIQKVIERR------KKSLNEVERKINEED 171 (218)
T ss_dssp ECTTSTTCCCHHHHHHHHHHHHHHHHHHH------HHHHHC---------
T ss_pred EchHhcccCCHHHHHHHHHHHHHHHHHHH------hcccccccccccccc
Confidence 99999654332333333344444444433 247899999998764
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=136.66 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=91.9
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
.....++|+++|++|+|||||+++|+....... .....++|.......+.+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~ 75 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHS-----------------------------GTAAKSITKKCEKRSSSW 75 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------------------------------CCSCEEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCcc-----------------------------CCCCCceeeeEEEEEEEe
Confidence 345678999999999999999999953222100 011124566666667778
Q ss_pred CCeeEEEEeCCCCcC-----------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-----HcCCc
Q 011910 158 ETTRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----TLGVT 221 (475)
Q Consensus 158 ~~~~~~liDtPGh~~-----------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-----~~~i~ 221 (475)
.+..+.||||||+.+ +...+......+|++|+|+|+.... ....+.+..+. ....|
T Consensus 76 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~l~~~~~~~~~~~~~~ 147 (239)
T 3lxx_A 76 KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT--------EEEHKATEKILKMFGERARSF 147 (239)
T ss_dssp TTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS--------SHHHHHHHHHHHHHHHHHGGG
T ss_pred CCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC--------HHHHHHHHHHHHHhhhhccce
Confidence 899999999999653 3344444456789999999987432 23334443332 12346
Q ss_pred eEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccc-----cccccc
Q 011910 222 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG-----LNMKTR 280 (475)
Q Consensus 222 ~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g-----~gi~~l 280 (475)
+++|+||+|+.......+.+....+.+..+++.++. +++++++..+ .++.+|
T Consensus 148 -~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~------~~~~~~~~~~~~~~~~~v~~l 204 (239)
T 3lxx_A 148 -MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD------RYCALNNKATGAEQEAQRAQL 204 (239)
T ss_dssp -EEEEEECGGGC------------CHHHHHHHHHHSS------SEEECCTTCCHHHHHHHHHHH
T ss_pred -EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC------EEEEEECCCCccccHHHHHHH
Confidence 899999999853321111122222345666666653 4666665533 566664
No 167
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.55 E-value=8.7e-15 Score=132.43 Aligned_cols=159 Identities=12% Similarity=0.140 Sum_probs=90.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEe-----e
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-----T 157 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~-----~ 157 (475)
.+|+++|.+|+|||||+++|.......... .....|+.. ....+. .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~---------------------------~~~t~g~~~--~~~~~~~~~~~~ 53 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGM---------------------------QSATVGIDV--KDWPIQIRDKRK 53 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC--------------------------------------CSEEE--EEEEC-------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCC---------------------------cceeccEEe--EEeeeccccCCC
Confidence 579999999999999999984321110000 000112221 111111 1
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~ 235 (475)
....+.++||||+..|.......++.+|++++|+|.+.+.. .+ ......+..+.. .+.| +++|.||+|+...
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--s~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 127 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQA--EV---DAMKPWLFNIKARASSSP-VILVGTHLDVSDE 127 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHH--HH---HTHHHHHHHHHHHCTTCE-EEEEEECGGGCCH
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchh--HH---HHHHHHHHHHHhhCCCCc-EEEEEECCCcccc
Confidence 35679999999998887665556778999999999987620 01 123333333333 2566 8899999998421
Q ss_pred CchHHHHHHH-HhhhhhHhhhhcCcccCCeeEEEeeccccc-ccccccc
Q 011910 236 NWSKERYDEI-ESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i-~~~l~~~l~~~~~~~~~~~~iipiSa~~g~-gi~~l~~ 282 (475)
...... ......+.+..++. ...+++++||++|. |+.++.+
T Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~~~~~l~~ 170 (184)
T 2zej_A 128 ----KQRKACMSKITKELLNKRGFP--AIRDYHFVNATEESDALAKLRK 170 (184)
T ss_dssp ----HHHHHHHHHHHHHTTTCTTSC--EEEEEEECCTTSCCHHHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHhcCCc--chhheEEEecccCchhHHHHHH
Confidence 111111 12222333333332 11248999999996 8888643
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=3.5e-14 Score=142.45 Aligned_cols=153 Identities=20% Similarity=0.256 Sum_probs=94.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.....|+++|.+|+|||||+++|...... .....+.|.......+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-------------------------------IASYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-------------------------------EECCTTCSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCeeeceeEEEEEecC
Confidence 35578999999999999999998422100 00012233333334455567
Q ss_pred eeEEEEeCCCCcCcHH--------HHhhc-cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-c-CCceEEEEEE
Q 011910 160 TRFTILDAPGHKSYVP--------NMISG-ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L-GVTKLLLVVN 228 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~--------~~~~~-~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~-~i~~iivviN 228 (475)
..+.++||||+.++.. ..+.+ ...+|.+|+|+|+..+. +++. ....+.+..+.. . +.| +|+|+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~-~~~~~~~~~i~~~~~~~p-iilV~N 288 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPL-EEQIHLFEEVHGEFKDLP-FLVVIN 288 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCH-HHHHHHHHHHHHHTTTSC-EEEEEC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCH-HHHHHHHHHHHHhcCCCC-EEEEEE
Confidence 8899999999866421 22223 34699999999987642 1111 112233333333 2 677 999999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+... ..++ ++..+++.. .++++++||++|.|+++++.
T Consensus 289 K~Dl~~~----~~~~----~~~~~~~~~------~~~~~~iSA~~g~gi~~l~~ 328 (357)
T 2e87_A 289 KIDVADE----ENIK----RLEKFVKEK------GLNPIKISALKGTGIDLVKE 328 (357)
T ss_dssp CTTTCCH----HHHH----HHHHHHHHT------TCCCEECBTTTTBTHHHHHH
T ss_pred CcccCCh----HHHH----HHHHHHHhc------CCCeEEEeCCCCcCHHHHHH
Confidence 9999421 1222 222333332 35799999999999999754
No 169
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.53 E-value=6.1e-14 Score=135.17 Aligned_cols=118 Identities=12% Similarity=0.041 Sum_probs=76.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|++|+|||||+++|+....... ....+.|.......+...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~ 86 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI------------------------------SPFQSEGPRPVMVSRSRAG 86 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC------------------------------CSSSCCCSSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc------------------------------cCCCCcceeeEEEEEeeCC
Confidence 4568999999999999999999953221000 0113344444445567788
Q ss_pred eeEEEEeCCCCcCcH---HHHhhc------cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-C----CceEEE
Q 011910 160 TRFTILDAPGHKSYV---PNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G----VTKLLL 225 (475)
Q Consensus 160 ~~~~liDtPGh~~f~---~~~~~~------~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~-~----i~~iiv 225 (475)
..++||||||+.+|. ...... ...+|++|+|+|+....+ .....+.+..+... + .| +|+
T Consensus 87 ~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~------~~~~~~~~~~l~~~~~~~~~~~-iiv 159 (270)
T 1h65_A 87 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV------DNLDKLVAKAITDSFGKGIWNK-AIV 159 (270)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC------CHHHHHHHHHHHHHHCGGGGGG-EEE
T ss_pred eEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC------CHHHHHHHHHHHHHhCcccccC-EEE
Confidence 999999999997763 111111 236999999998865322 12334455544432 4 45 999
Q ss_pred EEEccCCCC
Q 011910 226 VVNKMDDHT 234 (475)
Q Consensus 226 viNKiD~~~ 234 (475)
|+||+|+..
T Consensus 160 V~nK~Dl~~ 168 (270)
T 1h65_A 160 ALTHAQFSP 168 (270)
T ss_dssp EEECCSCCC
T ss_pred EEECcccCC
Confidence 999999843
No 170
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.53 E-value=1.3e-14 Score=139.28 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=77.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.+.++|+++|++|+|||||+++|++..... .....+.|.......+...+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 83 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR------------------------------VSPFQAEGLRPVMVSRTMGG 83 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC------------------------------CCSSCC-CCCCEEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCcceeeEEEEEEECC
Confidence 467899999999999999999996432110 01124455555666777889
Q ss_pred eeEEEEeCCCCcCcHHHH-------hhcc--ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-C----CceEEE
Q 011910 160 TRFTILDAPGHKSYVPNM-------ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G----VTKLLL 225 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~-------~~~~--~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~-~----i~~iiv 225 (475)
..++|+|||||.+|.... ...+ ..+|++|+|+|+....+. ......+..+... + .| +++
T Consensus 84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~------~~~~~~~~~l~~~~~~~~~~~-~iv 156 (262)
T 3def_A 84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVD------ELDKQVVIAITQTFGKEIWCK-TLL 156 (262)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCC------HHHHHHHHHHHHHHCGGGGGG-EEE
T ss_pred eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCC------HHHHHHHHHHHHHhchhhhcC-EEE
Confidence 999999999998773221 1111 278999999887654321 2333444444432 3 25 899
Q ss_pred EEEccCCC
Q 011910 226 VVNKMDDH 233 (475)
Q Consensus 226 viNKiD~~ 233 (475)
|+||+|+.
T Consensus 157 v~nK~Dl~ 164 (262)
T 3def_A 157 VLTHAQFS 164 (262)
T ss_dssp EEECTTCC
T ss_pred EEeCcccC
Confidence 99999984
No 171
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.53 E-value=1.4e-14 Score=153.27 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=94.6
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeee------e
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG------R 152 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~------~ 152 (475)
.....+|+++|.+|+|||||+++|....- ... .....|.++... .
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~--~~~---------------------------~~~t~g~~~~~~~~~~~~~ 88 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETF--DPK---------------------------ESQTHGLNVVTKQAPNIKG 88 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCC--CCC---------------------------CCCccceEEEEeccccccc
Confidence 45568999999999999999999953211 000 000011211110 0
Q ss_pred eEE--eeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC--CceEEEEEE
Q 011910 153 AHF--ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVN 228 (475)
Q Consensus 153 ~~~--~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~--i~~iivviN 228 (475)
..+ ......+.++||||+..|.......++.+|++|+|+|+... ......+..+...+ .| +|+|+|
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---------~~~~~~~~~l~~~~~~~p-vilV~N 158 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---------SNKHYWLRHIEKYGGKSP-VIVVMN 158 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---------GGHHHHHHHHHHHSSSCC-EEEEEC
T ss_pred eeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---------hhHHHHHHHHHHhCCCCC-EEEEEE
Confidence 001 12357899999999999987777778889999999999764 24556666666655 78 899999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+.... .... +.+...+... ..+++++||++|.|+.+++.
T Consensus 159 K~Dl~~~~--~v~~----~~~~~~~~~~------~~~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 159 KIDENPSY--NIEQ----KKINERFPAI------ENRFHRISCKNGDGVESIAK 200 (535)
T ss_dssp CTTTCTTC--CCCH----HHHHHHCGGG------TTCEEECCC-----CTTHHH
T ss_pred CCCccccc--ccCH----HHHHHHHHhc------CCceEEEecCcccCHHHHHH
Confidence 99995321 1111 2233334433 34799999999999998754
No 172
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=3.1e-14 Score=132.12 Aligned_cols=154 Identities=19% Similarity=0.177 Sum_probs=89.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|.+|+|||||+++|+.....+... . ...|.+.. ...+..++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~------------------------~----~~~g~d~~--~~~i~~~~ 84 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD------------------------C----EVLGEDTY--ERTLMVDG 84 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-------------------------------CCTTEE--EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc------------------------C----CccceeeE--EEEEEECC
Confidence 345789999999999999999985322111100 0 00111111 12233344
Q ss_pred --eeEEEEeCCCCcCcHH-HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCC
Q 011910 160 --TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 232 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~-~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~ 232 (475)
..+.++||+|...+.. ......+.+|++|+|+|.+.... |+ .....+..+.. .++| +|+|.||+|+
T Consensus 85 ~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~s---f~---~~~~~~~~l~~~~~~~~~p-iilVgNK~DL 157 (211)
T 2g3y_A 85 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSDL 157 (211)
T ss_dssp EEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHH---HH---HHHHHHHHHHTSGGGTTSC-EEEEEECTTC
T ss_pred eeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCc-EEEEEEChHH
Confidence 4578899999877322 22233567999999999876421 11 22222233332 2677 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... .-..+ +...+.... .++++++||++|.|+.+++.
T Consensus 158 ~~~r--~v~~~----e~~~~a~~~------~~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 158 VRCR--EVSVS----EGRACAVVF------DCKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp GGGC--CSCHH----HHHHHHHHH------TCEEEECBTTTTBSHHHHHH
T ss_pred hcCc--eEeHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 4211 00111 111222232 35799999999999999754
No 173
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.51 E-value=7.3e-14 Score=127.40 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=86.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 159 (475)
...+|+++|.+|+|||||+++|+.....+.... ...|.+.. ...+..++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~----------------------------~~~~~~~~--~~~~~~~~~ 54 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX----------------------------EVLGEDTY--ERTLMVDGE 54 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC--------------------------------GGGCTTEE--EEEEEETTE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc----------------------------cccceeEE--EEEEEECCe
Confidence 457899999999999999999864322211100 00111111 12233344
Q ss_pred -eeEEEEeCCCCcCc-HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCCC
Q 011910 160 -TRFTILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 233 (475)
Q Consensus 160 -~~~~liDtPGh~~f-~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~~ 233 (475)
..+.++||+|...+ ........+.+|++++|+|.+.... |. ...+.+..+.. .++| +|+|.||+|+.
T Consensus 55 ~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~ 127 (192)
T 2cjw_A 55 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSDLV 127 (192)
T ss_dssp EEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTTSCCC-EEEEEECTTCG
T ss_pred EEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCe-EEEEEechhhh
Confidence 35678999997652 1112223467899999999876421 11 22222232332 2677 99999999983
Q ss_pred CCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
... .-..+ +...+.... .++++++||++|.|+.+++.
T Consensus 128 ~~r--~v~~~----~~~~~a~~~------~~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 128 RXR--EVSVS----EGRAXAVVF------DXKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp GGC--CSCHH----HHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred ccc--cccHH----HHHHHHHHh------CCceEEeccccCCCHHHHHH
Confidence 210 00011 111122222 35799999999999999754
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.50 E-value=5.9e-14 Score=136.89 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=66.7
Q ss_pred CeeEEEEeCCCCcC-------------cHHHHhhccccCCEEE-EEEecCCCccccccCCCcchH-HHHHHHHHcCCceE
Q 011910 159 TTRFTILDAPGHKS-------------YVPNMISGASQADIGV-LVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 223 (475)
Q Consensus 159 ~~~~~liDtPGh~~-------------f~~~~~~~~~~~D~~v-lVVda~~g~~e~~~~~~~~t~-~~l~~~~~~~i~~i 223 (475)
...+.|+||||+.. +...+...+..++.+| +|+|+..+.. .+.. ..+..+...+.| +
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~~~~~~~~~~~~-~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR-T 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------GCHHHHHHHHHCTTCSS-E
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------hhHHHHHHHHhCCCCCe-E
Confidence 47899999999742 3344445667788776 6999988753 2332 345555556778 8
Q ss_pred EEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 224 ivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
++|+||+|+.... ....+. +...+..+.. ...+++++||++|.|+.++++
T Consensus 196 i~V~NK~Dl~~~~--~~~~~~----~~~~~~~~~~---~~~~v~~~SA~~~~gi~~l~~ 245 (299)
T 2aka_B 196 IGVITKLDLMDEG--TDARDV----LENKLLPLRR---GYIGVVNRSQKDIDGKKDITA 245 (299)
T ss_dssp EEEEECGGGSCTT--CCCHHH----HTTCSSCCTT---CEEECCCCCCBCTTSCBCHHH
T ss_pred EEEEEccccCCCC--chHHHH----HhCCcCcCCC---CcEEEECCChhhccccccHHH
Confidence 9999999995322 111111 1111111110 124789999999999998654
No 175
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.49 E-value=1.2e-13 Score=126.52 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=94.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 159 (475)
...+|+++|+.|+|||||+++|........ .....|.... ...+...+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-----------------------------~~~t~~~~~~--~~~i~~~g~ 52 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFA--TRSIQVDGK 52 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------------CCCSCEEE--EEEEEETTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEE--EEEEEECCE
Confidence 457899999999999999999853221100 0001122222 22344444
Q ss_pred -eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCCC
Q 011910 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 -~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~~ 235 (475)
..+.|+||||+..|..........+|++++|+|+..... + ......+..+.. .+.| +++|+||+|+...
T Consensus 53 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 53 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRHL 125 (199)
T ss_dssp EEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 467889999999886655556678999999999886532 1 122233333332 2456 8999999998321
Q ss_pred CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
...... +...++... .+.++.+||+++.|+.+++.
T Consensus 126 --~~~~~~----~a~~l~~~~------~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 126 --RAVPTD----EARAFAEKN------NLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp --CCSCHH----HHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred --cCcCHH----HHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 111111 123333333 35789999999999998754
No 176
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.48 E-value=9.9e-14 Score=135.78 Aligned_cols=182 Identities=14% Similarity=0.170 Sum_probs=105.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeEE
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 163 (475)
+|+++|..++|||||+.++.. + .... .....+.|+......+. ....+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~--~-~~~~---------------------------~~~~~~~Tig~~~~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH--N-MQPL---------------------------DTLYLESTSNPSLEHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS--C-CCSG---------------------------GGTTCCCCCSCCCEEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHc--C-CCCC---------------------------ccceecCeeeeeeEEEc-cEEEEE
Confidence 478999999999999986521 1 1100 00112344444433332 347899
Q ss_pred EEeCCCCcCcHH---HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH--cCCceEEEEEEccCCCCCCch
Q 011910 164 ILDAPGHKSYVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 164 liDtPGh~~f~~---~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~--~~i~~iivviNKiD~~~~~~~ 238 (475)
||||||+++|.. .+....+.++++|+|+|+... +...+ ....+.+..+.. .++| +++|.||+|+...+..
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~---~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R 124 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAI---TNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFK 124 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHH---HHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHH
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHH---HHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhh
Confidence 999999999964 234567899999999999876 32111 112222333322 3677 8899999999543222
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccccCCCCC-CChhhHHHHhhhcCC
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPW-WNGPCLFEALDRIEI 303 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w-~~g~~l~~~l~~l~~ 303 (475)
.+..+.+..+....+.+.++. ..+++|+.+||++ .|+.+.+......+ -..+.|.+.|+.+..
T Consensus 125 ~~~~R~V~~~~~~~la~~~~~-~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~~~ 188 (331)
T 3r7w_B 125 VDAQRDIMQRTGEELLELGLD-GVQVSFYLTSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNLIQ 188 (331)
T ss_dssp HHHHHHHHHHHHHTTSSSSCS-CCCEEEECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGGGC
T ss_pred hhHHHHhhHHHHHHHHhhccc-ccCceEEEeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222344444444444443321 1257999999998 58877543211111 133455566666543
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.47 E-value=5e-14 Score=138.57 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=50.3
Q ss_pred CCeeEEEEeCCCCcC-------------cHHHHhhccccCCEEEEEEec-CCCccccccCCCcchHHHHHHHHHcCCceE
Q 011910 158 ETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISA-RKGEFETGFEKGGQTREHVMLAKTLGVTKL 223 (475)
Q Consensus 158 ~~~~~~liDtPGh~~-------------f~~~~~~~~~~~D~~vlVVda-~~g~~e~~~~~~~~t~~~l~~~~~~~i~~i 223 (475)
....+.|+||||+.+ +...+..++..+|++|+|+|+ ..+... ......+..+...+.| +
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~------~~~~~i~~~~~~~~~~-~ 201 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN------SDALQLAKEVDPEGKR-T 201 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT------CSHHHHHHHHCSSCSS-E
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhh------hHHHHHHHHhCCCCCc-E
Confidence 457899999999864 445556678899999999997 444321 2223555566556788 8
Q ss_pred EEEEEccCCCC
Q 011910 224 LLVVNKMDDHT 234 (475)
Q Consensus 224 ivviNKiD~~~ 234 (475)
|+|+||+|+..
T Consensus 202 i~v~NK~Dl~~ 212 (315)
T 1jwy_B 202 IGVITKLDLMD 212 (315)
T ss_dssp EEEEECTTSSC
T ss_pred EEEEcCcccCC
Confidence 99999999954
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.47 E-value=3.2e-13 Score=124.43 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=92.8
Q ss_pred CCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEee
Q 011910 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (475)
Q Consensus 78 ~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 157 (475)
...+...|+++|++|+|||||+++|+..... . ......|.+..... +..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~--~---------------------------~~~~~~G~~~~~~~--~~~ 70 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSL--A---------------------------RTSKTPGRTQLINL--FEV 70 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEE--EEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCcc--c---------------------------cccCCCccceeeEE--EEe
Confidence 3445568999999999999999988422100 0 00011233332222 222
Q ss_pred CCeeEEEEeCCCCcC----------cHH---HHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEE
Q 011910 158 ETTRFTILDAPGHKS----------YVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 224 (475)
Q Consensus 158 ~~~~~~liDtPGh~~----------f~~---~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~ii 224 (475)
.+ .+.++||||+.. |.. ........+|++++|+|+..+.. ....+....+...++| ++
T Consensus 71 ~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~~ 141 (210)
T 1pui_A 71 AD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-------DLDQQMIEWAVDSNIA-VL 141 (210)
T ss_dssp ET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EE
T ss_pred cC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eE
Confidence 23 688999999853 211 22222357899999999987642 2233444556667888 78
Q ss_pred EEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 225 vviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+|.||+|+... ...+.....+..++...+ ..+.++|+||+++.|+.++..
T Consensus 142 ~v~nK~D~~s~----~~~~~~~~~~~~~~~~~~----~~~~~~~~Sal~~~~~~~l~~ 191 (210)
T 1pui_A 142 VLLTKADKLAS----GARKAQLNMVREAVLAFN----GDVQVETFSSLKKQGVDKLRQ 191 (210)
T ss_dssp EEEECGGGSCH----HHHHHHHHHHHHHHGGGC----SCEEEEECBTTTTBSHHHHHH
T ss_pred EEEecccCCCc----hhHHHHHHHHHHHHHhcC----CCCceEEEeecCCCCHHHHHH
Confidence 89999998432 111122334444444432 246889999999999998643
No 179
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.5e-13 Score=124.72 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=70.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
...++|+++|+.|+|||||+++|...... . .. .....+++. ....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~--~-~~-------------------------~~~~~~~~~-------~~~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR--P-TV-------------------------VSQEPLSAA-------DYDG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------------------------------CCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC--c-cc-------------------------ccCCCceee-------eecC
Confidence 45579999999999999999999543210 0 00 000011111 1156
Q ss_pred eeEEEEeCCCCcCcHHHHhhccc----cCCEEEEEEecC-CCccccccCCCcchHHHHHHHHH-------cCCceEEEEE
Q 011910 160 TRFTILDAPGHKSYVPNMISGAS----QADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVV 227 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~----~~D~~vlVVda~-~g~~e~~~~~~~~t~~~l~~~~~-------~~i~~iivvi 227 (475)
..+.|+||||+..|...+...+. .+|++|+|+|+. .... + ......+..+.. .++| +++|+
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 163 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK---L---TTTAEFLVDILSITESSCENGID-ILIAC 163 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHH---H---HHHHHHHHHHHHHHHHHSTTCCC-EEEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchh---H---HHHHHHHHHHHhhhhhccccCCC-EEEEE
Confidence 77999999999988655555544 389999999998 3211 1 122222222211 2777 99999
Q ss_pred EccCCCCCC
Q 011910 228 NKMDDHTVN 236 (475)
Q Consensus 228 NKiD~~~~~ 236 (475)
||+|+....
T Consensus 164 nK~Dl~~~~ 172 (193)
T 2ged_A 164 NKSELFTAR 172 (193)
T ss_dssp ECTTSTTCC
T ss_pred EchHhcCCC
Confidence 999996543
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=138.34 Aligned_cols=159 Identities=14% Similarity=0.214 Sum_probs=72.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+++|+.|+|||||+++|+.. +...... ......+....+++......+...+
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~-~~~~~~~---------------------~~~~~~~~~~ti~~~~~~~~~~~~~ 92 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLT-DLYPERV---------------------IPGAAEKIERTVQIEASTVEIEERG 92 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTC-CC------------------------------------CEEEEEEEEC----C
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCC-CCCCCCc---------------------ccCCCcccCCceeEEEEEEEeecCC
Confidence 44578999999999999999998432 1111100 0000111112333333223333344
Q ss_pred --eeEEEEeCCCCcCcHH-----------------HHhhccc----------cCCEEEEEEec-CCCccccccCCCcchH
Q 011910 160 --TRFTILDAPGHKSYVP-----------------NMISGAS----------QADIGVLVISA-RKGEFETGFEKGGQTR 209 (475)
Q Consensus 160 --~~~~liDtPGh~~f~~-----------------~~~~~~~----------~~D~~vlVVda-~~g~~e~~~~~~~~t~ 209 (475)
..++++||||+.++.. ....... .+|+++++|++ ..+.. ....
T Consensus 93 ~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~-------~~d~ 165 (361)
T 2qag_A 93 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLK-------PLDV 165 (361)
T ss_dssp EEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCC-------HHHH
T ss_pred cccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcc-------hhHH
Confidence 3699999999943321 1111111 23578888886 33321 2222
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 210 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 210 ~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+.+..+ ..++| +|+|+||+|+.. .......++.+..+++.. .++++++||++|.| .+.
T Consensus 166 ~~~~~l-~~~~p-iIlV~NK~Dl~~----~~ev~~~k~~i~~~~~~~------~i~~~~~Sa~~~~~-~e~ 223 (361)
T 2qag_A 166 AFMKAI-HNKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEH------NIKIYHLPDAESDE-DED 223 (361)
T ss_dssp HHHHHT-CS-SC-EEEEEECCSSSC----HHHHHHHHHHHHHHTTCC-------CCSCCCC----------
T ss_pred HHHHHh-ccCCC-EEEEEECCCCCC----HHHHHHHHHHHHHHHHHC------CCCEEeCCCcCCCc-chh
Confidence 333333 34677 999999999943 223344445566665554 35789999999998 554
No 181
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.43 E-value=4.6e-13 Score=135.77 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=24.4
Q ss_pred eeEEEEeCCCCcCc-------HHHHhhccccCCEEEEEEecCCC
Q 011910 160 TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKG 196 (475)
Q Consensus 160 ~~~~liDtPGh~~f-------~~~~~~~~~~~D~~vlVVda~~g 196 (475)
..+.|+||||+.++ .......++.+|++++|+|+..+
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 56999999998643 22233557899999999999875
No 182
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.43 E-value=6.9e-13 Score=120.73 Aligned_cols=152 Identities=19% Similarity=0.193 Sum_probs=93.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
.....|+++|+.|+|||||+++|....... .....++.+.....+...+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~i~~~g 75 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-------------------------------ESKSTIGVEFATRSIQVDG 75 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC-------------------------------SCCCCCSEEEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceEEEEEEEEECC
Confidence 456799999999999999999984322110 0001122222233344455
Q ss_pred e--eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011910 160 T--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 ~--~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~---~~i~~iivviNKiD~~~ 234 (475)
. .+.++||||+..|...+....+.+|++++|+|...... + ......+..+.. .+.| +++++||+|+..
T Consensus 76 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~ 148 (191)
T 1oix_A 76 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 4 45679999999887666666678899999999876421 1 122222332332 2455 899999999832
Q ss_pred CCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
. ...... ....++... .+.++.+||+++.|+.+++
T Consensus 149 ~--~~~~~~----~a~~l~~~~------~~~~ld~Sald~~~v~~l~ 183 (191)
T 1oix_A 149 L--RAVPTD----EARAFAEKN------GLSFIETSALDSTNVEAAF 183 (191)
T ss_dssp G--CCSCHH----HHHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred c--cccCHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 1 111111 222333333 4578999999999999853
No 183
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.41 E-value=3e-13 Score=135.56 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=68.8
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
..++.+.||||||...- ....+..+|++|+|+|+..+.....+ +. ..++.| +++|+||+|+..
T Consensus 169 ~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l------~~-----~~~~~p-~ivVlNK~Dl~~-- 231 (355)
T 3p32_A 169 AAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGI------KK-----GVLELA-DIVVVNKADGEH-- 231 (355)
T ss_dssp HTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTC------CT-----TSGGGC-SEEEEECCCGGG--
T ss_pred hCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHH------HH-----hHhhcC-CEEEEECCCCcC--
Confidence 35788999999996542 22335889999999998766421111 10 113457 789999999832
Q ss_pred chHHHHHHHHhhhhhHhhhhcCcc-cCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~~-~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.........++...+...+... ....+++++||++|.|+.++.+
T Consensus 232 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~ 276 (355)
T 3p32_A 232 --HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWD 276 (355)
T ss_dssp --HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHH
T ss_pred --hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 2334445555655554442110 1136899999999999998754
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.41 E-value=4.1e-13 Score=145.64 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=69.6
Q ss_pred eeEEEEeCCCCcC---cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHH-HHHHcCCceEEEEEEccCCCCC
Q 011910 160 TRFTILDAPGHKS---YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTLGVTKLLLVVNKMDDHTV 235 (475)
Q Consensus 160 ~~~~liDtPGh~~---f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~-~~~~~~i~~iivviNKiD~~~~ 235 (475)
..+.||||||+.+ ....+...+..+|++|+|+|+..+.. ....+.+. .+...+.| +++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s-------~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-------LGERRYLENYIKGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC-------HHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc-------hhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence 4699999999765 34445566788999999999988743 23333333 33445777 8999999998422
Q ss_pred Cc-hH---HHHHHHHhhhh----hHhhhh----cCcccCCeeEEEeecc--------------cccccccccc
Q 011910 236 NW-SK---ERYDEIESKMT----PFLKAS----GYNVKKDVQFLPISGL--------------MGLNMKTRVD 282 (475)
Q Consensus 236 ~~-~~---~~~~~i~~~l~----~~l~~~----~~~~~~~~~iipiSa~--------------~g~gi~~l~~ 282 (475)
.. +. +.++.+.+.+. ..+... |+. ....+++++||+ +|.|+.++..
T Consensus 246 ~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~-~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~ 317 (695)
T 2j69_A 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQN-IYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMD 317 (695)
T ss_dssp GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCB-CGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHH
T ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHH
Confidence 10 00 12222222222 222211 111 013479999999 9999988643
No 185
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.38 E-value=5.7e-13 Score=132.73 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=66.3
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
+.++.++|+||||+.++.... ...+|++|+|+|+..+.. +. ..+. ...+.| .++|+||+|+...
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~---~~---~l~~-----~~~~~p-~ivv~NK~Dl~~~- 209 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDD---LQ---GIKK-----GLMEVA-DLIVINKDDGDNH- 209 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC---------C---CCCH-----HHHHHC-SEEEECCCCTTCH-
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHH---HH---HHHH-----hhhccc-CEEEEECCCCCCh-
Confidence 467899999999998765543 478999999999976632 11 1111 112456 6789999999431
Q ss_pred chHHHHHHHHhhhhhHhhhhcCc-ccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~~-~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
..+....+++...+..++.. .....+++|+||++|.|+.++.+
T Consensus 210 ---~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 253 (341)
T 2p67_A 210 ---TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWH 253 (341)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHH
Confidence 23344444454444332210 00134799999999999998754
No 186
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.36 E-value=4.4e-13 Score=128.04 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=49.8
Q ss_pred cCCEEEEEEecCCC--ccccccCCCcchHHHHHHHH----HcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhh
Q 011910 183 QADIGVLVISARKG--EFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKAS 256 (475)
Q Consensus 183 ~~D~~vlVVda~~g--~~e~~~~~~~~t~~~l~~~~----~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~ 256 (475)
.||++|+|+|++.. .. |+ .....+..+. ..++| +|+|.||+|+.. +... ++...+.+..
T Consensus 162 ~ad~vilV~D~t~~~~~s---~~---~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~----~~~v----~~~~~~~~~~ 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRN---FD---DQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGV----ERYI----RDAHTFALSK 226 (255)
T ss_dssp ECCEEEEEEECBC----C---HH---HHHHHHHHHHHHHHHTTCC-EEEEEECGGGBC----HHHH----HHHHHHHHTS
T ss_pred cCCEEEEEEECCCCchhh---HH---HHHHHHHHHHHHhccCCCC-EEEEEEcccccc----cHHH----HHHHHHHHhc
Confidence 68999999999874 21 11 2223333322 24678 999999999832 1111 2333343331
Q ss_pred cCcccCCeeEEEeecccccccccccc
Q 011910 257 GYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 257 ~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
..++++++||++|.|+.+++.
T Consensus 227 -----~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 227 -----KNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp -----SSCCEEECBTTTTBSHHHHHH
T ss_pred -----CCCeEEEEECCCCCCHHHHHH
Confidence 135899999999999998643
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.35 E-value=1.7e-12 Score=131.95 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=89.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
+....|+++|++|||||||+++|......+. +. ...|.......+...+
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~-------------------------~~------~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHPKIA-------------------------PY------PFTTLSPNLGVVEVSE 203 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCCEEC-------------------------CC------TTCSSCCEEEEEECSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCcccc-------------------------Cc------ccceecceeeEEEecC
Confidence 3445799999999999999999832211000 00 1112222222344444
Q ss_pred -eeEEEEeCCCCcCc-------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH-cCCceEEEEEEcc
Q 011910 160 -TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKM 230 (475)
Q Consensus 160 -~~~~liDtPGh~~f-------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~-~~i~~iivviNKi 230 (475)
..++++|+||+... .......+..+|.+|+|+|+....+ ..++ .-.++...++.. ...| .|+++||+
T Consensus 204 ~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~-~~ls--~g~~el~~la~aL~~~P-~ILVlNKl 279 (416)
T 1udx_A 204 EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPL-KTLE--TLRKEVGAYDPALLRRP-SLVALNKV 279 (416)
T ss_dssp SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHH-HHHH--HHHHHHHHHCHHHHHSC-EEEEEECC
T ss_pred cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCH-HHHH--HHHHHHHHHhHHhhcCC-EEEEEECC
Confidence 78999999998542 1223344567999999999962111 0111 111222222222 3567 67888999
Q ss_pred CCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccccc
Q 011910 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK 283 (475)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~~ 283 (475)
|+... ..+ ..+...++.. ..+++++||+++.|+.+++..
T Consensus 280 Dl~~~----~~~----~~l~~~l~~~------g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 280 DLLEE----EAV----KALADALARE------GLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp TTSCH----HHH----HHHHHHHHTT------TSCEEECCTTTCTTHHHHHHH
T ss_pred ChhhH----HHH----HHHHHHHHhc------CCeEEEEECCCccCHHHHHHH
Confidence 98321 222 2333344332 347999999999999997553
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.35 E-value=3.6e-13 Score=125.28 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=89.2
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEe-eee---eE
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGR---AH 154 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~-~~~---~~ 154 (475)
....++|+++|++|+|||||+++|+........-.. . ....+. . .|.... +..|.++. ... ..
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~--i---~~d~~~-~------~d~~~~-~~~~~~~~~~~~~~~~~ 93 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGA--M---LGDVVS-K------ADYERV-RRFGIKAEAISTGKECH 93 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEE--E---ECSCCC-H------HHHHHH-HTTTCEEEECCCTTCSS
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEE--E---ecCCCC-c------hhHHHH-HhCCCcEEEecCCceee
Confidence 345679999999999999999999765421100000 0 000000 0 000000 01122211 000 01
Q ss_pred E----------eeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEE
Q 011910 155 F----------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 224 (475)
Q Consensus 155 ~----------~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~ii 224 (475)
+ ...+..+.||||||+..-- .. .-..++.+++|+|+..+.. ... ......+.| ++
T Consensus 94 ~~~~~~~~~~~~~~~~d~iiidt~G~~~~~-~~--~~~~~~~~i~vvd~~~~~~--------~~~---~~~~~~~~~-~i 158 (221)
T 2wsm_A 94 LDAHMIYHRLKKFSDCDLLLIENVGNLICP-VD--FDLGENYRVVMVSVTEGDD--------VVE---KHPEIFRVA-DL 158 (221)
T ss_dssp CCHHHHHTTGGGGTTCSEEEEEEEEBSSGG-GG--CCCSCSEEEEEEEGGGCTT--------HHH---HCHHHHHTC-SE
T ss_pred cccHHHHHHHHhcCCCCEEEEeCCCCCCCC-ch--hccccCcEEEEEeCCCcch--------hhh---hhhhhhhcC-CE
Confidence 1 2356789999999952110 00 0124688999999987631 111 222335677 78
Q ss_pred EEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 225 vviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+|+||+|+. +.....++.+.+.+ +..+ ...+++++||++|.|+.++++
T Consensus 159 iv~NK~Dl~--~~~~~~~~~~~~~~----~~~~----~~~~i~~~Sa~~g~gi~~l~~ 206 (221)
T 2wsm_A 159 IVINKVALA--EAVGADVEKMKADA----KLIN----PRAKIIEMDLKTGKGFEEWID 206 (221)
T ss_dssp EEEECGGGH--HHHTCCHHHHHHHH----HHHC----TTSEEEECBTTTTBTHHHHHH
T ss_pred EEEecccCC--cchhhHHHHHHHHH----HHhC----CCCeEEEeecCCCCCHHHHHH
Confidence 899999983 21111233333333 3322 145899999999999998643
No 189
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=128.69 Aligned_cols=107 Identities=17% Similarity=0.123 Sum_probs=59.5
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
..+..+.|+||||...-. ......+|++++|+|+..|.. .+ .+.. ..+..| .++|+||+|+..
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~-------~~---~i~~-~il~~~-~ivVlNK~Dl~~-- 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE-------LQ---GIKR-GIIEMA-DLVAVTKSDGDL-- 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSGGG--
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh-------HH---HhHH-HHHhcC-CEEEEeeecCCC--
Confidence 367789999999964221 223468999999999987631 11 1111 124667 678999999832
Q ss_pred chHHHHHHHHhhhhhHhhhhcC-cccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGY-NVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~-~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
..........+...++.... ......+++++||++|.|+.++.+
T Consensus 227 --~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~ 271 (349)
T 2www_A 227 --IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWD 271 (349)
T ss_dssp --HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHH
T ss_pred --chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHH
Confidence 11122222333332222110 000135899999999999998644
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.29 E-value=3.4e-12 Score=128.09 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=65.3
Q ss_pred CeeEEEEeCCCCcCc-------------HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEE
Q 011910 159 TTRFTILDAPGHKSY-------------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 225 (475)
Q Consensus 159 ~~~~~liDtPGh~~f-------------~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iiv 225 (475)
...++|+||||..++ ...+...+..+|++|||+|+...... .....+.+..+...+.| +|+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~-----~~~~~~l~~~~~~~~~~-~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPSGDR-TFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGG-----GCHHHHHHHHSCTTCTT-EEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcC-----CHHHHHHHHHhcccCCC-EEE
Confidence 567999999998876 44455567899999999987542210 12223334444445677 899
Q ss_pred EEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 226 viNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
|+||+|+.... .... . .+..... ....+++++|+.++.++.+.
T Consensus 209 V~nK~Dl~~~~--~~~~-~-------~~~~~~~--~~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 209 VLTKIDLMDKG--TDAV-E-------ILEGRSF--KLKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp EEECGGGCCTT--CCSH-H-------HHTTSSS--CCSSCCEEECCCCHHHHHTT
T ss_pred EEeCCccCCCc--ccHH-H-------HHcCccc--cccCCeEEEEECChHHhccC
Confidence 99999994321 1111 1 1111111 12457899999999988764
No 191
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.28 E-value=7.9e-12 Score=131.95 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=57.7
Q ss_pred eeEEEEeCCCCcC-----------cHHHHhhccccCCEEEEEEecCC-CccccccCCCcchHHHHHHHHHcCCceEEEEE
Q 011910 160 TRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARK-GEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 227 (475)
Q Consensus 160 ~~~~liDtPGh~~-----------f~~~~~~~~~~~D~~vlVVda~~-g~~e~~~~~~~~t~~~l~~~~~~~i~~iivvi 227 (475)
..++||||||+.+ |...+...+..+|++|+|+|+.. +.. .+..+++..+...+.| +++|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~-------~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS-------DEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC-------HHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC-------HHHHHHHHHHHhcCCC-EEEEE
Confidence 4699999999876 56666677889999999999987 332 3566677766666777 89999
Q ss_pred EccCCCCCCchHHHHHHHHhhhh
Q 011910 228 NKMDDHTVNWSKERYDEIESKMT 250 (475)
Q Consensus 228 NKiD~~~~~~~~~~~~~i~~~l~ 250 (475)
||+|+.. .+.+..+...+.
T Consensus 226 NK~Dl~~----~~el~~~~~~l~ 244 (550)
T 2qpt_A 226 NKADMVE----TQQLMRVYGALM 244 (550)
T ss_dssp ECGGGSC----HHHHHHHHHHHH
T ss_pred ECCCccC----HHHHHHHHHHhh
Confidence 9999942 233444444443
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.26 E-value=1.3e-11 Score=133.41 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=67.2
Q ss_pred CeeEEEEeCCCCcCc------------HH-HHhhcc-ccCCEEEEEEecCCCccccccCCCcchH-HHHHHHHHcCCceE
Q 011910 159 TTRFTILDAPGHKSY------------VP-NMISGA-SQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 223 (475)
Q Consensus 159 ~~~~~liDtPGh~~f------------~~-~~~~~~-~~~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~~~i~~i 223 (475)
...++|+||||...- +. .+...+ ..+|++++|+|+..+.. .+.. ..+..+...+.| +
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-------~~d~l~ll~~L~~~g~p-v 220 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR-T 220 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-------SCHHHHHHHHHCTTCSS-E
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-------hhHHHHHHHHHHhcCCC-E
Confidence 457999999996541 11 222223 47899999999998753 2343 566666667788 8
Q ss_pred EEEEEccCCCCCCchHHHHHHHHhhhhhHhh-hhcCcccCCeeEEEeecccccccccccc
Q 011910 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLK-ASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 224 ivviNKiD~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+||+|+.... . ....+.. ...+. ..+ ..+++++||++|.|+.+|.+
T Consensus 221 IlVlNKiDlv~~~--~-~~~~il~--~~~~~l~lg-----~~~VV~iSA~~G~GvdeL~e 270 (772)
T 3zvr_A 221 IGVITKLDLMDEG--T-DARDVLE--NKLLPLRRG-----YIGVVNRSQKDIDGKKDITA 270 (772)
T ss_dssp EEEEECTTSSCTT--C-CSHHHHT--TCSSCCSSC-----EEECCCCCCEESSSSEEHHH
T ss_pred EEEEeCcccCCcc--h-hhHHHHH--HHhhhhhcc-----CCceEEecccccccchhHHH
Confidence 9999999995322 1 1111111 00000 112 24789999999999988754
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.26 E-value=6.5e-12 Score=125.68 Aligned_cols=107 Identities=12% Similarity=0.031 Sum_probs=61.7
Q ss_pred CeeEEEEeCCCCcC------------cHH-HHhhcccc-CCEEEEEEecCCCccccccCCCcchH-HHHHHHHHcCCceE
Q 011910 159 TTRFTILDAPGHKS------------YVP-NMISGASQ-ADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 223 (475)
Q Consensus 159 ~~~~~liDtPGh~~------------f~~-~~~~~~~~-~D~~vlVVda~~g~~e~~~~~~~~t~-~~l~~~~~~~i~~i 223 (475)
...++||||||... .+. .+...+.. ++++++|+|+..+.. .+.. +.+..+...+.| +
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~-------~~~~~~i~~~~~~~~~~-~ 200 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKVAKEVDPQGQR-T 200 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG-------GCHHHHHHHHHCTTCTT-E
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc-------hhHHHHHHHHhCcCCCc-e
Confidence 57899999999643 222 33334444 456666778876542 2332 344455455778 8
Q ss_pred EEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 224 ivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
|+|+||+|+.... .. ...+.+ ..+..+.. ...+++++||++|.|+.++.+
T Consensus 201 i~V~NK~Dl~~~~--~~-~~~~~~---~~~~~l~~---~~~~v~~~SA~~~~~i~~l~~ 250 (353)
T 2x2e_A 201 IGVITKLDLMDEG--TD-ARDVLE---NKLLPLRR---GYIGVVNRSQKDIDGKKDITA 250 (353)
T ss_dssp EEEEECGGGSCTT--CC-CHHHHT---TCSSCCTT---CEEECCCCCHHHHHTTCCHHH
T ss_pred EEEeccccccCcc--hh-HHHHHh---CCcccccC---CceEEEeCCcccccccccHHH
Confidence 9999999995322 10 111111 10001000 124789999999999988654
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.19 E-value=4.8e-11 Score=113.84 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=63.8
Q ss_pred CeeEEEEeCCCCcCcHHH------HhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSYVPN------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~------~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.+.|+||||..++... +...+.. +++|+|+|+........+. .............+.| +++|+||+|+
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~--~~~~~~~~~~~~~~~p-~~iv~NK~D~ 183 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYC--FVRFFALLIDLRLGAT-TIPALNKVDL 183 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHH--HHHHHHHHHHHHHTSC-EEEEECCGGG
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHH--HHHHHHHHHhcccCCC-eEEEEecccc
Confidence 357999999998776422 2234556 8999999987653210000 0000011223345788 8899999998
Q ss_pred CCCCchHHHHHHHHhhhhhH---------------------hhhhcCcccCCeeEEEeecccccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPF---------------------LKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~---------------------l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.... ....+.+..+++..+ +..++ ...+++++||++|.|+.++++
T Consensus 184 ~~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 184 LSEE-EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL----PPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp CCHH-HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS----CCCCCEECCTTTCTTHHHHHH
T ss_pred cccc-cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhc----CcccceEEEecCcccHHHHHH
Confidence 4321 001111111111111 12222 124789999999999998643
No 195
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.11 E-value=2.8e-10 Score=92.41 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=68.7
Q ss_pred CCCceEEEEEEEc-cCCeEEEEEEEEeeEecCCeEEecCCC-CeEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCc
Q 011910 309 NGPFRMPIIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 386 (475)
Q Consensus 309 ~~~~~~~v~~~~~-~~G~v~~g~v~~G~l~~gd~v~i~p~~-~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (475)
..|..+.+..++. -.|+++.|+|.+|+|++|+.| |++ ...+|+||+++++++++|.+||.|+++++|... ++++
T Consensus 32 ~~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~~ 107 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVKK 107 (116)
T ss_dssp SCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCCT
T ss_pred cCcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccCC
Confidence 3566777776322 118899999999999999999 888 789999999999999999999999999999876 8999
Q ss_pred eeEEec
Q 011910 387 GFVLSS 392 (475)
Q Consensus 387 G~vl~~ 392 (475)
|++|..
T Consensus 108 GdVLyv 113 (116)
T 1xe1_A 108 GDVLEI 113 (116)
T ss_dssp TCEEEE
T ss_pred CcEEEE
Confidence 999864
No 196
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1.6e-10 Score=115.63 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=79.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 159 (475)
....+|+|+|.+|+|||||+++|...... .....+.|++.....+.+.+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~-------------------------------v~~~pftT~~~~~g~~~~~~ 118 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESE-------------------------------AAEYEFTTLVTVPGVIRYKG 118 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCC-------------------------------GGGTCSSCCCEEEEEEEETT
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCc-------------------------------ccCCCCceeeeeeEEEEeCC
Confidence 44568999999999999999999432111 11125677777777788899
Q ss_pred eeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-----CCceEEEEE
Q 011910 160 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVV 227 (475)
Q Consensus 160 ~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~-----~i~~iivvi 227 (475)
.++.|+||||... .....+..++.||++++|||+.++.. ........+... ..| .++++
T Consensus 119 ~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--------~~~~i~~EL~~~~~~l~~k~-~~i~~ 189 (376)
T 4a9a_A 119 AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--------HKQIIEKELEGVGIRLNKTP-PDILI 189 (376)
T ss_dssp EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--------HHHHHHHHHHHTTEEETCCC-CCEEE
T ss_pred cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--------HHHHHHHHHHHhhHhhccCC-hhhhh
Confidence 9999999999743 23556677889999999999987641 222222223332 234 67899
Q ss_pred EccCC
Q 011910 228 NKMDD 232 (475)
Q Consensus 228 NKiD~ 232 (475)
||+|.
T Consensus 190 nK~d~ 194 (376)
T 4a9a_A 190 KKKEK 194 (376)
T ss_dssp EECSS
T ss_pred hHhhh
Confidence 99997
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=7.4e-10 Score=110.21 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=53.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC---
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--- 159 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--- 159 (475)
.+|+++|.+|+|||||+++|....... ....+.|+......+..++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v-------------------------------~~~p~tTi~p~~g~v~~~~~r~ 51 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEA-------------------------------ANYPFCTIEPNTGVVPMPDPRL 51 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------------------------------------CCCCCCCCSSEEECCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcc-------------------------------cCCCCceECceEEEEecCCccc
Confidence 579999999999999999995422000 0001223332222233332
Q ss_pred --------------eeEEEEeCCCCcCcHH-------HHhhccccCCEEEEEEecCC
Q 011910 160 --------------TRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 195 (475)
Q Consensus 160 --------------~~~~liDtPGh~~f~~-------~~~~~~~~~D~~vlVVda~~ 195 (475)
..+.|+||||+.++.. .....++.+|++++|+|+.+
T Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 52 DALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999988742 23344678999999999986
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.02 E-value=9.1e-10 Score=110.15 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=29.7
Q ss_pred CeeEEEEeCCCCcCcH-------HHHhhccccCCEEEEEEecCC
Q 011910 159 TTRFTILDAPGHKSYV-------PNMISGASQADIGVLVISARK 195 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~-------~~~~~~~~~~D~~vlVVda~~ 195 (475)
...+.|+||||...+. ......++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4579999999987752 344556789999999999986
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.01 E-value=7.8e-10 Score=109.70 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=59.0
Q ss_pred eCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q 011910 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (475)
Q Consensus 157 ~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~ 236 (475)
..+..+.|+||||...--. .....+|++++|+|+..+.... ..+..+ ...+ .++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~------~i~~~i-----~~~~-~ivvlNK~Dl~~~- 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQ------GIKKGI-----FELA-DMIAVNKADDGDG- 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------------CCTTH-----HHHC-SEEEEECCSTTCC-
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHH------HHHHHH-----hccc-cEEEEEchhccCc-
Confidence 3678899999999754221 2246899999999986542100 011101 1234 4567899997321
Q ss_pred chHHHHHHHHhhhhhHhhhhcC-cccCCeeEEEeecccccccccccc
Q 011910 237 WSKERYDEIESKMTPFLKASGY-NVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~~~-~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
........+.+...+....- ......+++++||++|.|+.++.+
T Consensus 209 --~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 209 --ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWS 253 (337)
T ss_dssp --HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 11111222333322221110 000124799999999999998644
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.98 E-value=1.2e-09 Score=106.62 Aligned_cols=79 Identities=10% Similarity=0.104 Sum_probs=40.1
Q ss_pred CCEEEEEEecCC-CccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccC
Q 011910 184 ADIGVLVISARK-GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKK 262 (475)
Q Consensus 184 ~D~~vlVVda~~-g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 262 (475)
++++++++++.. +.- ....+.+..+. .+++ +++|+||.|+.. .......++++..+++..+
T Consensus 127 a~~ll~ldePt~~~Ld-------~~~~~~l~~l~-~~~~-iilV~~K~Dl~~----~~e~~~~~~~~~~~~~~~~----- 188 (301)
T 2qnr_A 127 VHCCFYFISPFGHGLK-------PLDVAFMKAIH-NKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEHN----- 188 (301)
T ss_dssp CCEEEEEECSSSSSCC-------HHHHHHHHHHT-TTSC-EEEEECCGGGSC----HHHHHHHHHHHHHHHHHTT-----
T ss_pred hhheeeeecCcccCCC-------HHHHHHHHHHH-hcCC-EEEEEEeCCCCC----HHHHHHHHHHHHHHHHHcC-----
Confidence 345666666543 331 33333333332 3456 899999999843 2223344556666666654
Q ss_pred CeeEEEeecccccccccccc
Q 011910 263 DVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 263 ~~~iipiSa~~g~gi~~l~~ 282 (475)
++++++||++| |+++++.
T Consensus 189 -~~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 189 -IKIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp -CCCCCCC----------CH
T ss_pred -CeEEecCCccc-cccHHHH
Confidence 47899999999 9998654
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.97 E-value=1.3e-09 Score=101.45 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=57.4
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCch
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~ 238 (475)
+..+.++|++|..... ...-...+..+.|+|+..+.. ... .. ....+.| +++|+||+|+... .
T Consensus 118 ~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~-------~~~-~~---~~~~~~~-~iiv~NK~Dl~~~--~ 180 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDD-------TIE-KH---PGIMKTA-DLIVINKIDLADA--V 180 (226)
T ss_dssp GCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTT-------TTT-TC---HHHHTTC-SEEEEECGGGHHH--H
T ss_pred CCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchh-------hHh-hh---hhHhhcC-CEEEEeccccCch--h
Confidence 3479999999953211 111234577889999765421 011 01 1124677 7889999998311 0
Q ss_pred HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
...++++ ...++..+ ...+++++||++|.|+.+++.
T Consensus 181 ~~~~~~~----~~~~~~~~----~~~~~~~~Sa~~g~gv~~l~~ 216 (226)
T 2hf9_A 181 GADIKKM----ENDAKRIN----PDAEVVLLSLKTMEGFDKVLE 216 (226)
T ss_dssp TCCHHHH----HHHHHHHC----TTSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHH----HHHHHHhC----CCCeEEEEEecCCCCHHHHHH
Confidence 0122232 23333332 145899999999999998643
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=110.55 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=75.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC-
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 158 (475)
.-..+|+|+|+.|+|||||+++|+........ .+... .+. ...+......+.+...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~------------~~~~~------~~~-----~~t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPE------------YPGPS------HRI-----KKTVQVEQSKVLIKEGG 85 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCC------------CCSCC----------------CCEEEEEECC-----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCC------------CCCcc------cCC-----ccceeeeeEEEEEecCC
Confidence 34467899999999999999998532210000 00000 000 0001111111111112
Q ss_pred -CeeEEEEeCCCCcCcHH------HH------------------hhc-ccc--CCEEEEEEecC-CCccccccCCCcchH
Q 011910 159 -TTRFTILDAPGHKSYVP------NM------------------ISG-ASQ--ADIGVLVISAR-KGEFETGFEKGGQTR 209 (475)
Q Consensus 159 -~~~~~liDtPGh~~f~~------~~------------------~~~-~~~--~D~~vlVVda~-~g~~e~~~~~~~~t~ 209 (475)
...++++||||...+.. .+ .++ +.. ++++|+++++. .+.. ....
T Consensus 86 ~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~-------~~d~ 158 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-------PLDI 158 (418)
T ss_dssp -CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC-------HHHH
T ss_pred cccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC-------HHHH
Confidence 24689999999876532 11 011 223 34566666654 4532 3344
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 210 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 210 ~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+.+..+. .+++ +|+|+||+|+.. ...+...++.+...+...+ ++++.+|+.++.|+.++
T Consensus 159 ~~lk~L~-~~v~-iIlVinK~Dll~----~~ev~~~k~~i~~~~~~~~------i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 159 EFMKRLH-EKVN-IIPLIAKADTLT----PEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKL 217 (418)
T ss_dssp HHHHHHT-TTSE-EEEEEESTTSSC----HHHHHHHHHHHHHHHHHHT------CCCCCCC----------
T ss_pred HHHHHHh-ccCc-EEEEEEcccCcc----HHHHHHHHHHHHHHHHHcC------CeEEeCCCCCCcCHHHH
Confidence 4555544 3777 999999999842 3345555667777777654 46889999999888764
No 203
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.94 E-value=4.2e-09 Score=103.42 Aligned_cols=135 Identities=11% Similarity=0.094 Sum_probs=85.3
Q ss_pred cceEEeeeeeEEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecC-------CCccccccCCCcchHHHHHHHH
Q 011910 144 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR-------KGEFETGFEKGGQTREHVMLAK 216 (475)
Q Consensus 144 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~-------~g~~e~~~~~~~~t~~~l~~~~ 216 (475)
+..|+......+...+..+.++||+|++.|...+....+.++++|+|+|.+ +......+ ......+..+.
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~---~es~~~~~~i~ 227 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM---EESKALFRTII 227 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHH---HHHHHHHHHHH
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHH---HHHHHHHHHHh
Confidence 445666666778888999999999999999999999999999999999875 21110000 01222222222
Q ss_pred H----cCCceEEEEEEccCCCCCC------------ch--HHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccc
Q 011910 217 T----LGVTKLLLVVNKMDDHTVN------------WS--KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 278 (475)
Q Consensus 217 ~----~~i~~iivviNKiD~~~~~------------~~--~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~ 278 (475)
. .++| +|++.||+|+.... |. ...+++..+.+...+....-.....+.+..+||+++.|+.
T Consensus 228 ~~~~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 228 TYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp TSGGGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 1 2567 99999999983210 00 0123333333333333332222345778899999999999
Q ss_pred cccc
Q 011910 279 TRVD 282 (475)
Q Consensus 279 ~l~~ 282 (475)
..+.
T Consensus 307 ~vF~ 310 (327)
T 3ohm_A 307 FVFA 310 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8644
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.92 E-value=1e-09 Score=114.02 Aligned_cols=66 Identities=27% Similarity=0.345 Sum_probs=42.7
Q ss_pred CCeeEEEEeCCCCcC----cHHHHhhc--cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 158 ETTRFTILDAPGHKS----YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 158 ~~~~~~liDtPGh~~----f~~~~~~~--~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
.++.+.||||||... +...+... +..+|.+++||||..|. .....+..+.. .+|-.++|+||+|
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~-~~~i~gvVlNK~D 251 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKD-KVDVASVIVTKLD 251 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHH-HHCCCCEEEECTT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHh-hcCceEEEEeCCc
Confidence 678899999999763 33333222 23789999999998873 23333333332 1451268999999
Q ss_pred CC
Q 011910 232 DH 233 (475)
Q Consensus 232 ~~ 233 (475)
..
T Consensus 252 ~~ 253 (504)
T 2j37_W 252 GH 253 (504)
T ss_dssp SC
T ss_pred cc
Confidence 84
No 205
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.89 E-value=4.1e-09 Score=103.93 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=83.5
Q ss_pred cceEEeeeeeEEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCC-------CccccccCCCcchHHHHHHHH
Q 011910 144 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK-------GEFETGFEKGGQTREHVMLAK 216 (475)
Q Consensus 144 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~-------g~~e~~~~~~~~t~~~l~~~~ 216 (475)
+..|+......+...+..+.+|||+|++.|...+....+.++++|+|+|.++ ......+ ......+..+.
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~---~es~~~~~~i~ 221 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRL---TESIAVFKDIM 221 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHH---HHHHHHHHHHH
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchH---HHHHHHHHHHh
Confidence 4456666667788889999999999999999999999999999999999872 1000000 11222232222
Q ss_pred H----cCCceEEEEEEccCCCCCC------------ch-HHHHHHHHhhhhhHh------hhhcCccc-----------C
Q 011910 217 T----LGVTKLLLVVNKMDDHTVN------------WS-KERYDEIESKMTPFL------KASGYNVK-----------K 262 (475)
Q Consensus 217 ~----~~i~~iivviNKiD~~~~~------------~~-~~~~~~i~~~l~~~l------~~~~~~~~-----------~ 262 (475)
. .++| +|++.||+|+.... |. ...+++..+.+...+ ..+..... .
T Consensus 222 ~~~~~~~~p-iiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (340)
T 4fid_A 222 TNEFLKGAV-KLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNE 300 (340)
T ss_dssp HCGGGTTSE-EEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------C
T ss_pred hhhccCCCe-EEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCc
Confidence 2 2567 99999999983110 00 001233333333333 11111111 2
Q ss_pred CeeEEEeecccccccccccc
Q 011910 263 DVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 263 ~~~iipiSa~~g~gi~~l~~ 282 (475)
.+.+..+||+.+.|+...+.
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~ 320 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFM 320 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHH
Confidence 47789999999999988654
No 206
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.73 E-value=2.5e-08 Score=99.26 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=85.0
Q ss_pred cceEEeeeeeEEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCcc-------ccccCCCcchHHHHHHHH
Q 011910 144 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF-------ETGFEKGGQTREHVMLAK 216 (475)
Q Consensus 144 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~-------e~~~~~~~~t~~~l~~~~ 216 (475)
+..|+......+...+..+.++||+|++.|...+......++++|+|+|.++-.. ...+ ......+..+.
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~---~e~~~~~~~i~ 253 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM---HESMKLFDSIC 253 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHH---HHHHHHHHHHH
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhH---HHHHHHHHHHH
Confidence 3445555556677789999999999999999999999999999999999886210 0001 12223333322
Q ss_pred H----cCCceEEEEEEccCCCCCCc------------h-HHHHHHHHhhhhhHhhhhcCc-ccCCeeEEEeecccccccc
Q 011910 217 T----LGVTKLLLVVNKMDDHTVNW------------S-KERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMK 278 (475)
Q Consensus 217 ~----~~i~~iivviNKiD~~~~~~------------~-~~~~~~i~~~l~~~l~~~~~~-~~~~~~iipiSa~~g~gi~ 278 (475)
. .++| +|+|.||+|+..... . ....++..+.+...+..+... ....+.++.+||++|.|+.
T Consensus 254 ~~~~~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~ 332 (353)
T 1cip_A 254 NNKWFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQ 332 (353)
T ss_dssp TCGGGTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHH
T ss_pred cCccccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHH
Confidence 2 2567 999999999831000 0 011233333333222222111 1236789999999999999
Q ss_pred cccc
Q 011910 279 TRVD 282 (475)
Q Consensus 279 ~l~~ 282 (475)
+++.
T Consensus 333 ~vF~ 336 (353)
T 1cip_A 333 FVFD 336 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8644
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.66 E-value=5.3e-08 Score=98.64 Aligned_cols=140 Identities=13% Similarity=0.178 Sum_probs=73.0
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 158 (475)
....++++|+|+.|+|||||++.|+... +. |.. +.. ...+.+.....+.+...
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~--l~--------------g~~------~~~-----~~~~~~~~~i~~v~Q~~ 91 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTK--FE--------------GEP------ATH-----TQPGVQLQSNTYDLQES 91 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSC--C--------------------------------CCSSCEEEEEEEEEEC-
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCcc--cc--------------CCc------CCC-----CCccceEeeEEEEeecC
Confidence 4445679999999999999999985431 10 000 000 00122222212222222
Q ss_pred C--eeEEEEeCCCCcCcH-------------HHH----hh---cc-------ccC--C-EEEEEEecCCCccccccCCCc
Q 011910 159 T--TRFTILDAPGHKSYV-------------PNM----IS---GA-------SQA--D-IGVLVISARKGEFETGFEKGG 206 (475)
Q Consensus 159 ~--~~~~liDtPGh~~f~-------------~~~----~~---~~-------~~~--D-~~vlVVda~~g~~e~~~~~~~ 206 (475)
+ ..++++|+||..... ... +. ++ ..+ | ++++|+|+.++.. .
T Consensus 92 ~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~-------~ 164 (427)
T 2qag_B 92 NVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK-------S 164 (427)
T ss_dssp -CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C-------H
T ss_pred ccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC-------H
Confidence 2 368999999975431 111 11 11 112 2 4667788887753 2
Q ss_pred chHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcC
Q 011910 207 QTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (475)
Q Consensus 207 ~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~ 258 (475)
...+.+..+. .+++ +|+|+||+|..+ .......+..+...|+..|.
T Consensus 165 ~Dieilk~L~-~~~~-vI~Vi~KtD~Lt----~~E~~~l~~~I~~~L~~~gi 210 (427)
T 2qag_B 165 LDLVTMKKLD-SKVN-IIPIIAKADAIS----KSELTKFKIKITSELVSNGV 210 (427)
T ss_dssp HHHHHHHHTC-SCSE-EEEEESCGGGSC----HHHHHHHHHHHHHHHBTTBC
T ss_pred HHHHHHHHHh-hCCC-EEEEEcchhccc----hHHHHHHHHHHHHHHHHcCC
Confidence 3444444443 4666 999999999853 23455566666655555443
No 208
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.64 E-value=3.5e-09 Score=106.27 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=83.0
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|.+|+|||||+|+|+...... . .........|.|.......+ +..+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~--------------~-----------~~~~~~~~~gtT~~~~~~~~---~~~~ 214 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGK--------------G-----------NVITTSYFPGTTLDMIEIPL---ESGA 214 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHT--------------T-----------CCCEEEECTTSSCEEEEEEC---STTC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCC--------------c-----------cceeecCCCCeEEeeEEEEe---CCCe
Confidence 589999999999999999996542100 0 00001112345544433222 2248
Q ss_pred EEEeCCCCcCcH-------HHHhhcc---ccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 163 TILDAPGHKSYV-------PNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 163 ~liDtPGh~~f~-------~~~~~~~---~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.++||||..+.- ...+..+ ...|.+++++++....+..++.. +..+...+.| +++++||+|.
T Consensus 215 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~~-~~~v~~k~d~ 286 (369)
T 3ec1_A 215 TLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRRS-FVCYMANELT 286 (369)
T ss_dssp EEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTSC
T ss_pred EEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCce-EEEEecCCcc
Confidence 999999964321 1111222 56899999999965544322221 2223335677 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.... ..+...+.+++ .+| ..+.|.++..+.++.++
T Consensus 287 ~~~~----~~~~~~~~~~~---~~g------~~l~p~~~~~~~~~~~l 321 (369)
T 3ec1_A 287 VHRT----KLEKADSLYAN---QLG------ELLSPPSKRYAAEFPPL 321 (369)
T ss_dssp EEEE----EGGGHHHHHHH---HBT------TTBCSSCGGGTTTCCCE
T ss_pred cccc----cHHHHHHHHHH---hcC------CccCCCCchhhhhccCc
Confidence 4332 11222222222 222 25677777666666554
No 209
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.60 E-value=8.9e-08 Score=95.58 Aligned_cols=134 Identities=10% Similarity=0.150 Sum_probs=75.3
Q ss_pred ceEEeeeeeEEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCc---c----ccccCCCcchHHHHHHHHH
Q 011910 145 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---F----ETGFEKGGQTREHVMLAKT 217 (475)
Q Consensus 145 g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~---~----e~~~~~~~~t~~~l~~~~~ 217 (475)
..|+......+...+..+.++||+|++.|...+......++++|+|+|.++-. . ...+ ......+..+..
T Consensus 186 ~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~---~es~~~~~~i~~ 262 (362)
T 1zcb_A 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRL---TESLNIFETIVN 262 (362)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHH---HHHHHHHHHHHT
T ss_pred CCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHH---HHHHHHHHHHhc
Confidence 34555555667778899999999999999999999999999999999998620 0 0001 122222322222
Q ss_pred ----cCCceEEEEEEccCCCCCC------------c--hHHHHHHHHhhhhhHhhhhcCcc-cCCeeEEEeecccccccc
Q 011910 218 ----LGVTKLLLVVNKMDDHTVN------------W--SKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMK 278 (475)
Q Consensus 218 ----~~i~~iivviNKiD~~~~~------------~--~~~~~~~i~~~l~~~l~~~~~~~-~~~~~iipiSa~~g~gi~ 278 (475)
.++| +|+++||+|+.... | ....+++..+.+...+..+.-.+ ...+.++.+||++|.|+.
T Consensus 263 ~~~~~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~ 341 (362)
T 1zcb_A 263 NRVFSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIR 341 (362)
T ss_dssp CGGGTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHH
T ss_pred chhhCCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHH
Confidence 2567 99999999983100 0 00112333332222222221100 135688999999999999
Q ss_pred cccc
Q 011910 279 TRVD 282 (475)
Q Consensus 279 ~l~~ 282 (475)
+++.
T Consensus 342 ~vF~ 345 (362)
T 1zcb_A 342 LVFR 345 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.59 E-value=1.8e-07 Score=89.62 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=44.2
Q ss_pred cCCEEEEEEecC-CCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcC
Q 011910 183 QADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (475)
Q Consensus 183 ~~D~~vlVVda~-~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~ 258 (475)
.++++++++|.. +|.. ....+.+..+... ++ +|+|+||+|... .......+..+...++..+.
T Consensus 111 Ral~~lllldep~~gL~-------~lD~~~l~~L~~~-~~-vI~Vi~K~D~lt----~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLR-------PLDLEFMKHLSKV-VN-IIPVIAKADTMT----LEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp SCCEEEEEECCCSSSCC-------HHHHHHHHHHHTT-SE-EEEEETTGGGSC----HHHHHHHHHHHHHHHHHTTC
T ss_pred eeeeeeEEEecCCCcCC-------HHHHHHHHHHHhc-Cc-EEEEEeccccCC----HHHHHHHHHHHHHHHHHcCc
Confidence 468899999954 6643 4666677766655 66 999999999853 34555666777766766654
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.59 E-value=6.9e-09 Score=104.06 Aligned_cols=150 Identities=12% Similarity=0.093 Sum_probs=82.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCCeeE
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 162 (475)
.+|+++|.+|+|||||+|+|+...... . .+........|.|....... .. ..+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~-----------------~-------~~~~~~~~~~gtT~~~~~~~--~~-~~~ 213 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDE-----------------T-------ENVITTSHFPGTTLDLIDIP--LD-EES 213 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTS-----------------C-------SSCCEEECCC----CEEEEE--SS-SSC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccc-----------------c-------ccceecCCCCCeecceEEEE--ec-CCe
Confidence 589999999999999999996543110 0 00000111245554443332 22 238
Q ss_pred EEEeCCCCcCcH-------HHHhhc---cccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 163 TILDAPGHKSYV-------PNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 163 ~liDtPGh~~f~-------~~~~~~---~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.++||||..+.- ...+.. ....+.+++++++....+..++.. +..+...+.| +++++||+|.
T Consensus 214 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------~d~l~~~~~~-~~~v~nk~d~ 285 (368)
T 3h2y_A 214 SLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-------FDYVSGGRRA-FTCHFSNRLT 285 (368)
T ss_dssp EEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTSC
T ss_pred EEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-------EEEecCCCce-EEEEecCccc
Confidence 999999974321 111111 356789999999865544333221 2222334677 9999999998
Q ss_pred CCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
.... ..+...+.+++. +| ..+.|.++..+.++.++
T Consensus 286 ~~~~----~~~~~~~~~~~~---~g------~~l~p~~~~~~~~~~~l 320 (368)
T 3h2y_A 286 IHRT----KLEKADELYKNH---AG------DLLSPPTPEELENMPEL 320 (368)
T ss_dssp EEEE----EHHHHHHHHHHH---BT------TTBCSSCHHHHHTSCCE
T ss_pred cccc----cHHHHHHHHHHH---hC------CccCCCchhhHhhccCc
Confidence 4322 233333333322 22 24667777666666554
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.57 E-value=9.3e-08 Score=97.66 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=42.6
Q ss_pred CCeeEEEEeCCCCcCc----HHHHh--hccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCC-ceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSY----VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f----~~~~~--~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i-~~iivviNKi 230 (475)
.++.+.||||||.... ...+. ..+..+|.+++|+||..|. .....+... ..++ +...+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~-~~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAF-KEAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHH-HTTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHH-hhcccCCeEEEEeCC
Confidence 5678999999997653 22221 2233699999999998762 222222222 2235 5467899999
Q ss_pred CCC
Q 011910 231 DDH 233 (475)
Q Consensus 231 D~~ 233 (475)
|..
T Consensus 249 D~~ 251 (432)
T 2v3c_C 249 DGS 251 (432)
T ss_dssp SSC
T ss_pred CCc
Confidence 983
No 213
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.57 E-value=5.2e-07 Score=91.37 Aligned_cols=160 Identities=13% Similarity=0.141 Sum_probs=84.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC-
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 159 (475)
....++++|+.|||||||++.|...... + .|.- ..+.....+ .++ .+....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p-~-------------~GsI------~~~g~~~t~-~~~-------v~q~~~~ 119 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNE-E-------------EGAA------KTGVVEVTM-ERH-------PYKHPNI 119 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTT-S-------------TTSC------CCCC----C-CCE-------EEECSSC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCc-c-------------CceE------EECCeecce-eEE-------ecccccc
Confidence 3358999999999999999999652110 0 0100 011100000 111 122222
Q ss_pred eeEEEEeCCCCcC---cHHHHhh--ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011910 160 TRFTILDAPGHKS---YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (475)
Q Consensus 160 ~~~~liDtPGh~~---f~~~~~~--~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~ 234 (475)
..++++|+||... -....+. ++...|..++ ++...+. .|....+..+...+.| +++|+||.|+.-
T Consensus 120 ~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~--------kqrv~la~aL~~~~~p-~~lV~tkpdlll 189 (413)
T 1tq4_A 120 PNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK--------KNDIDIAKAISMMKKE-FYFVRTKVDSDI 189 (413)
T ss_dssp TTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC--------HHHHHHHHHHHHTTCE-EEEEECCHHHHH
T ss_pred CCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc--------HHHHHHHHHHHhcCCC-eEEEEecCcccc
Confidence 3689999999531 1333333 2334455554 7765431 3445555555666887 899999999721
Q ss_pred -----CCchHHHHHHHHhhhhhHh----hhhcCcccCCeeEEEeec--cccccccccc
Q 011910 235 -----VNWSKERYDEIESKMTPFL----KASGYNVKKDVQFLPISG--LMGLNMKTRV 281 (475)
Q Consensus 235 -----~~~~~~~~~~i~~~l~~~l----~~~~~~~~~~~~iipiSa--~~g~gi~~l~ 281 (475)
...+....+++.+.+..+. .+.|.. ...+|++|+ ..+.|++++.
T Consensus 190 LDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~---~~~iiliSsh~l~~~~~e~L~ 244 (413)
T 1tq4_A 190 TNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA---EPPIFLLSNKNVCHYDFPVLM 244 (413)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS---SCCEEECCTTCTTSTTHHHHH
T ss_pred cCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCcCCccCHHHHH
Confidence 1111111223344444332 233322 237899999 6666787753
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=5.3e-07 Score=91.74 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=56.2
Q ss_pred CCeeEEEEeCCCCcCcHHHHh------hccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 158 ETTRFTILDAPGHKSYVPNMI------SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~------~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
.++.+.||||||....-.... ..+..+|.++||+||..|. .....+..... .++-..|++||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---------~a~~~a~~f~~-~~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---------QAYNQALAFKE-ATPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GHHHHHHHHHH-SCTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---------hHHHHHHHHHh-hCCCeEEEEECCC
Confidence 457899999999644322211 2234689999999998762 33333333332 3332468999999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.... ...+.. +.... ..|+..++. |+++++|.
T Consensus 251 ~~~~------gG~~ls----~~~~~------g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 251 GSAK------GGGALS----AVAAT------GAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp SCSS------HHHHHH----HHHTT------CCCEEEEEC--SSSTTCEE
T ss_pred Cccc------ccHHHH----HHHHH------CCCEEEEEc--CCChHHhh
Confidence 8321 111111 22222 346777775 99998763
No 215
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.51 E-value=9.6e-08 Score=95.92 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=47.6
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeC--
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 158 (475)
...+|+++|.+|+|||||+++|....-.. ....+.|+......+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~-------------------------------~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASA-------------------------------ENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEECCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccc-------------------------------cCCCccccCceeEEEEECCc
Confidence 34679999999999999999994321100 001222332222222222
Q ss_pred ---------------CeeEEEEeCCCCcCcHH-------HHhhccccCCEEEEEEecCC
Q 011910 159 ---------------TTRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 195 (475)
Q Consensus 159 ---------------~~~~~liDtPGh~~f~~-------~~~~~~~~~D~~vlVVda~~ 195 (475)
...+.|+||||+..+.. .....++.+|++++|||+.+
T Consensus 70 r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 70 RFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23599999999887643 44566789999999999975
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.47 E-value=5.5e-07 Score=91.60 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=56.7
Q ss_pred CCeeEEEEeCCCCcC------cHHHHhh--ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEE
Q 011910 158 ETTRFTILDAPGHKS------YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVN 228 (475)
Q Consensus 158 ~~~~~~liDtPGh~~------f~~~~~~--~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviN 228 (475)
.++.+.|+||||... ++.++.. ....+|.++||+|+..|. .....+.... ..++ ..|++|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---------~a~~~a~~f~~~~~~--~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---------KAYDLASRFHQASPI--GSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GGHHHHHHHHHHCSS--EEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---------HHHHHHHHHhcccCC--cEEEEe
Confidence 467899999999655 3333332 223579999999998762 3334444443 2343 467999
Q ss_pred ccCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 229 KiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
|+|.. . +...+.. +.... ..|+..++. |++++++
T Consensus 247 KlD~~-a-----~~G~als----~~~~~------g~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 247 KMDGT-A-----KGGGALS----AVVAT------GATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CGGGC-S-----CHHHHHH----HHHHH------TCEEEEEEC--CSSSSCE
T ss_pred ccccc-c-----cchHHHH----HHHHH------CCCEEEEEC--CCChHhC
Confidence 99973 2 1222222 11222 347777775 9988765
No 217
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.41 E-value=2.7e-07 Score=89.89 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=70.5
Q ss_pred eEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHH
Q 011910 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (475)
Q Consensus 161 ~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~ 240 (475)
.+.++|| +++|....-..++.+|++|+|+|+....+ .+ ....+.+..+...++| +|+|+||+|+... .
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s~---~~l~~~l~~~~~~~~p-iilv~NK~DL~~~----~ 131 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--ST---YIIDKFLVLAEKNELE-TVMVINKMDLYDE----D 131 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGGCCH----H
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEeHHHcCCc----h
Confidence 7899999 88887777778899999999999987631 01 1234445555556888 8899999999321 1
Q ss_pred HHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 241 ~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.. +++..+++..+- . .+++++||++|.|+.+++.
T Consensus 132 ~v----~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 132 DL----RKVRELEEIYSG---L-YPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp HH----HHHHHHHHHHTT---T-SCEEECCTTTCTTHHHHHH
T ss_pred hH----HHHHHHHHHHhh---h-CcEEEEECCCCcCHHHHHH
Confidence 11 223333333320 1 4799999999999998653
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.38 E-value=1.9e-06 Score=83.55 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=58.2
Q ss_pred CCeeEEEEeCCCCcC--cHHHHh------hccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEc
Q 011910 158 ETTRFTILDAPGHKS--YVPNMI------SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (475)
Q Consensus 158 ~~~~~~liDtPGh~~--f~~~~~------~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNK 229 (475)
.++.+.||||||... .-..+. ..+..+|.+++|+|+..| ....+.+..... .++-..+|+||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 567899999999877 322222 234579999999999765 234444444333 45535678999
Q ss_pred cCCCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 230 iD~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+|... +...+. .+.... ..|+..++ +|++++++.
T Consensus 249 ~D~~~------~~g~~~----~~~~~~------~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 249 MDGTA------KGGGAL----SAVAAT------GATIKFIG--TGEKIDELE 282 (297)
T ss_dssp GGGCT------THHHHH----HHHHTT------TCCEEEEE--CSSSTTCEE
T ss_pred CCCCc------chHHHH----HHHHHH------CcCEEEEe--CCCChhhcc
Confidence 99731 111121 222222 34666665 688887753
No 219
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.34 E-value=1.3e-06 Score=88.06 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=58.9
Q ss_pred eEEeeeeeEEeeCCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCC---cc----ccccCCCcchHHHHHHHHH-
Q 011910 146 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EF----ETGFEKGGQTREHVMLAKT- 217 (475)
Q Consensus 146 ~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g---~~----e~~~~~~~~t~~~l~~~~~- 217 (475)
.|+.+....+...+..+.||||+|++.|...+....+.++++|+|+|.+.- .. ...| ......+..+..
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~---~e~~~~~~~i~~~ 279 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL---QEALNLFKSIWNN 279 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH---HHHHHHHHHHHTC
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchH---HHHHHHHHHHHhc
Confidence 355455566777889999999999999999999999999999999998861 00 0001 122233333322
Q ss_pred ---cCCceEEEEEEccCC
Q 011910 218 ---LGVTKLLLVVNKMDD 232 (475)
Q Consensus 218 ---~~i~~iivviNKiD~ 232 (475)
.++| +|+|.||+|+
T Consensus 280 ~~~~~~p-iiLvgNK~DL 296 (402)
T 1azs_C 280 RWLRTIS-VILFLNKQDL 296 (402)
T ss_dssp TTCSSCC-EEEEEECHHH
T ss_pred ccCCCCe-EEEEEEChhh
Confidence 2567 9999999998
No 220
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.29 E-value=1.4e-06 Score=86.53 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCC-------CccccccCCCcchHHHHHHHHH----cCCceEEEE
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK-------GEFETGFEKGGQTREHVMLAKT----LGVTKLLLV 226 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~-------g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivv 226 (475)
....+.|+||+|++.|...+....+.++++|+|+|.++ ......| ......+..+.. .++| +|+|
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~---~~~~~~~~~i~~~~~~~~~p-iiLv 256 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM---METKELFDWVLKQPCFEKTS-FMLF 256 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH---HHHHHHHHHHHTCGGGSSCE-EEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHH---HHHHHHHHHHHhccccCCCe-EEEE
Confidence 34779999999999999999999999999999999861 1100001 122223322222 2566 9999
Q ss_pred EEccCC
Q 011910 227 VNKMDD 232 (475)
Q Consensus 227 iNKiD~ 232 (475)
.||+|+
T Consensus 257 gNK~DL 262 (354)
T 2xtz_A 257 LNKFDI 262 (354)
T ss_dssp EECHHH
T ss_pred EECcch
Confidence 999998
No 221
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.20 E-value=1.8e-06 Score=86.76 Aligned_cols=84 Identities=19% Similarity=0.118 Sum_probs=54.3
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEEeeCC--
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 159 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 159 (475)
...|+++|++|+|||||+++|........ ....+.|+......+...+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~------------------------------~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNP------------------------------ANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTST------------------------------TCCSSCCCCTTEEEEEECCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccc------------------------------cCCCceeecceeeeeeeCCcc
Confidence 46899999999999999999954211000 0012223333322233332
Q ss_pred ---------------eeEEEEeCCCCcC-------cHHHHhhccccCCEEEEEEecCC
Q 011910 160 ---------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 195 (475)
Q Consensus 160 ---------------~~~~liDtPGh~~-------f~~~~~~~~~~~D~~vlVVda~~ 195 (475)
..+.++|+||... +.......++.+|.+++|+|+..
T Consensus 70 ~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 70 FDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred hhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999643 33455666789999999999865
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.17 E-value=2.5e-06 Score=82.18 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=59.2
Q ss_pred EEeCCCCc-CcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHH
Q 011910 164 ILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 242 (475)
Q Consensus 164 liDtPGh~-~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~ 242 (475)
|-+.|||. ...+.+...+..+|+++.|+||..+... .. ..+.... .+.| .++|+||+|+.. .+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~-------~~-~~l~~~l-~~kp-~ilVlNK~DL~~----~~~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSS-------RN-PMIEDIL-KNKP-RIMLLNKADKAD----AAVT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTT-------SC-HHHHHHC-SSSC-EEEEEECGGGSC----HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCcc-------CC-HHHHHHH-CCCC-EEEEEECcccCC----HHHH
Confidence 45689997 4677788889999999999999987531 11 1122211 3556 889999999942 1111
Q ss_pred HHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 243 ~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+....+++..| ++++++||.+|.|+.++..
T Consensus 69 ----~~~~~~~~~~g------~~~i~iSA~~~~gi~~L~~ 98 (282)
T 1puj_A 69 ----QQWKEHFENQG------IRSLSINSVNGQGLNQIVP 98 (282)
T ss_dssp ----HHHHHHHHTTT------CCEEECCTTTCTTGGGHHH
T ss_pred ----HHHHHHHHhcC------CcEEEEECCCcccHHHHHH
Confidence 22223343333 4789999999999998644
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.12 E-value=7.8e-06 Score=80.32 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=56.2
Q ss_pred CeeEEEEeCCCCcCc----HHHHhh--ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEEccC
Q 011910 159 TTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 231 (475)
Q Consensus 159 ~~~~~liDtPGh~~f----~~~~~~--~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviNKiD 231 (475)
++.+.++||+|.... +..+.. .+-.+|-.++|+|+..+ .+..+.+..+. ..++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------~~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------NAIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------HHHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 455778999997443 333221 12358999999998876 24455554444 45665 57899999
Q ss_pred CCCCCchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
.. +.. -.+. .++... ..|+..++ +|++++++.
T Consensus 280 ~~-a~~-----G~~l----~~~~~~------~~pi~~i~--~Ge~v~dl~ 311 (328)
T 3e70_C 280 AD-ARG-----GAAL----SISYVI------DAPILFVG--VGQGYDDLR 311 (328)
T ss_dssp GC-SCC-----HHHH----HHHHHH------TCCEEEEE--CSSSTTCEE
T ss_pred Cc-cch-----hHHH----HHHHHH------CCCEEEEe--CCCCccccc
Confidence 62 211 1122 222333 34677777 799987763
No 224
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.11 E-value=2.9e-06 Score=86.62 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=41.8
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhc------cccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~------~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviNKi 230 (475)
.++.+.||||||...+...+... +..+|.+++|+|+..|. .....+.... ..++. -|++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 56789999999976653333322 44789999999998662 2333333222 23433 3689999
Q ss_pred CCC
Q 011910 231 DDH 233 (475)
Q Consensus 231 D~~ 233 (475)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 973
No 225
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.10 E-value=2.4e-06 Score=83.21 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=62.5
Q ss_pred CcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhh
Q 011910 170 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 249 (475)
Q Consensus 170 h~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l 249 (475)
+++|....-..++.+|.+++|+|+.++.+. + ....+.+..+...++| +|+|+||+|+. + ...+. ..+++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s--~---~~l~~~l~~~~~~~~~-~ilV~NK~DL~--~--~~~v~-~~~~~ 134 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFN--N---YLLDNMLVVYEYFKVE-PVIVFNKIDLL--N--EEEKK-ELERW 134 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCC--H---HHHHHHHHHHHHTTCE-EEEEECCGGGC--C--HHHHH-HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCC--H---HHHHHHHHHHHhCCCC-EEEEEEcccCC--C--ccccH-HHHHH
Confidence 444443333468899999999999876421 1 1334555666677888 88999999993 2 11111 12233
Q ss_pred hhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 250 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 250 ~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
..+++..| ++++++||++|.|++++..
T Consensus 135 ~~~~~~~g------~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 135 ISIYRDAG------YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHCC------CeEEEEECCCCCCHHHHHh
Confidence 34444444 4799999999999998754
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.97 E-value=3e-06 Score=89.42 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.9
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHH
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..+...|+|+|.+|+|||||+|+|+.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcC
Confidence 45678899999999999999999954
No 227
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.81 E-value=3.4e-05 Score=79.27 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=39.6
Q ss_pred CCeeEEEEeCCCCcCcHHH-------Hhhcc-----ccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEE
Q 011910 158 ETTRFTILDAPGHKSYVPN-------MISGA-----SQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLL 224 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~-------~~~~~-----~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~ii 224 (475)
.++.+.||||+|....-.. +.+.+ ..++-++||+|+..|. .....+..+. .+++. .
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---------~al~~ak~f~~~~~it--g 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---------NAVSQAKLFHEAVGLT--G 442 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCS--E
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---------HHHHHHHHHHhhcCCC--E
Confidence 4566889999997543221 11111 1367899999998772 2333333333 45776 3
Q ss_pred EEEEccCC
Q 011910 225 LVVNKMDD 232 (475)
Q Consensus 225 vviNKiD~ 232 (475)
+++||+|-
T Consensus 443 vIlTKLD~ 450 (503)
T 2yhs_A 443 ITLTKLDG 450 (503)
T ss_dssp EEEECGGG
T ss_pred EEEEcCCC
Confidence 68999996
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.80 E-value=3.8e-05 Score=73.01 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=54.5
Q ss_pred CCCcCcH-HHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHH
Q 011910 168 PGHKSYV-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 246 (475)
Q Consensus 168 PGh~~f~-~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~ 246 (475)
|||.... +.+...+..+|+++.|+||..+...... ... + + +.| .++|+||+|+. + ....
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~----~l~--l--l---~k~-~iivlNK~DL~--~--~~~~---- 64 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY----GVD--F--S---RKE-TIILLNKVDIA--D--EKTT---- 64 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT----TSC--C--T---TSE-EEEEEECGGGS--C--HHHH----
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh----HHH--h--c---CCC-cEEEEECccCC--C--HHHH----
Confidence 8997654 5677778999999999999987642111 111 1 1 777 78999999994 2 1111
Q ss_pred hhhhhHhhhhcCcccCCeeEEEeeccccccccccc
Q 011910 247 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 247 ~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+....++++.| .++ ++||.+|.|+.++.
T Consensus 65 ~~~~~~~~~~g------~~v-~iSa~~~~gi~~L~ 92 (262)
T 3cnl_A 65 KKWVEFFKKQG------KRV-ITTHKGEPRKVLLK 92 (262)
T ss_dssp HHHHHHHHHTT------CCE-EECCTTSCHHHHHH
T ss_pred HHHHHHHHHcC------CeE-EEECCCCcCHHHHH
Confidence 22233444433 356 99999999998754
No 229
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.75 E-value=2e-05 Score=75.85 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHH
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
....+|+++|.+|+|||||+|+|+.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCceEEEEecCCCchHHHHHHHhc
Confidence 3457899999999999999999953
No 230
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.75 E-value=2.9e-05 Score=61.22 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=66.8
Q ss_pred EEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCC---eEEEEEEEECCccceeeCCCCEEEEEeccCCccCCCcee
Q 011910 314 MPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (475)
Q Consensus 314 ~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (475)
..|.++|+ ..|+++..+|.+|.|+.+..+.+...+. ..++.|+.++..++.++.+|.-|+|.|.+. .|++.||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCCC
Confidence 45566663 5699999999999999999999999884 458999999999999999999999999976 4799999
Q ss_pred EEec
Q 011910 389 VLSS 392 (475)
Q Consensus 389 vl~~ 392 (475)
++-.
T Consensus 87 ~Ie~ 90 (99)
T 1d1n_A 87 VIEA 90 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9854
No 231
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.71 E-value=3.6e-05 Score=76.98 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=63.4
Q ss_pred EEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHH
Q 011910 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 241 (475)
Q Consensus 162 ~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~ 241 (475)
+.-+++| +++|..........++++|+|+|+.+... .+. ....+.+ .+.| +++|+||+|+..... .
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~--~~l~~~l-----~~~p-iilV~NK~DLl~~~~---~ 116 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--SFI--PGLPRFA-----ADNP-ILLVGNKADLLPRSV---K 116 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCC--SSHHHHC-----TTSC-EEEEEECGGGSCTTC---C
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--chh--hHHHHHh-----CCCC-EEEEEEChhcCCCcc---C
Confidence 3444554 67787776666688999999999987542 111 1222221 2566 889999999954321 1
Q ss_pred HHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 242 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 242 ~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
.+.+.+.+..+++..|+. ..+++++||++|.|+.++.+
T Consensus 117 ~~~~~~~l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~~ 154 (369)
T 3ec1_A 117 YPKLLRWMRRMAEELGLC---PVDVCLVSAAKGIGMAKVME 154 (369)
T ss_dssp HHHHHHHHHHHHHTTTCC---CSEEEECBTTTTBTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---cccEEEEECCCCCCHHHHHH
Confidence 233444555556666653 23789999999999988654
No 232
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.70 E-value=6.8e-05 Score=68.04 Aligned_cols=94 Identities=12% Similarity=0.008 Sum_probs=57.3
Q ss_pred CCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHH----HHH----cCCceEEEEEEcc-CCCCCCchH
Q 011910 169 GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKT----LGVTKLLLVVNKM-DDHTVNWSK 239 (475)
Q Consensus 169 Gh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~----~~~----~~i~~iivviNKi-D~~~~~~~~ 239 (475)
|+..+...+-.+...+|++|+|||+++... ...++-+.. +.. .++| ++|+.||. |++.+-
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R-------~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Am--- 179 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM--- 179 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCC-------CCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBC---
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhH-------HHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCC---
Confidence 788888888888899999999999987532 124443321 111 3677 88888995 775442
Q ss_pred HHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 240 ~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
...++.+.+. |..+ . ..+.+.++||++|+|+.+-
T Consensus 180 -s~~EI~e~L~--L~~l--~--R~W~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 180 -PCFYLAHELH--LNLL--N--HPWLVQDTEAETLTGFLNG 213 (227)
T ss_dssp -CHHHHHHHTT--GGGG--C--SCEEEEEEETTTCTTHHHH
T ss_pred -CHHHHHHHcC--CcCC--C--CCEEEEEeECCCCcCHHHH
Confidence 2234444432 2222 1 3678999999999998873
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.70 E-value=5.3e-05 Score=73.57 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=57.8
Q ss_pred ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCc
Q 011910 180 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (475)
Q Consensus 180 ~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 259 (475)
.+..+|.+++|+|+..+.+. .....+.+..+...+++ .++|+||+|+... .. .++..+.+...+...|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~-----~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~--~~--~~~~~~~~~~~y~~~g~- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFS-----TALLDRFLVLVEANDIQ-PIICITKMDLIED--QD--TEDTIQAYAEDYRNIGY- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCC-----HHHHHHHHHHHHTTTCE-EEEEEECGGGCCC--HH--HHHHHHHHHHHHHHHTC-
T ss_pred HHHhCCEEEEEEeCCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEECCccCch--hh--hHHHHHHHHHHHHhCCC-
Confidence 47899999999999987652 11233444445557888 7899999999432 11 10112333445555554
Q ss_pred ccCCeeEEEeecccccccccccc
Q 011910 260 VKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 260 ~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+++++||.+|.|+.+|..
T Consensus 152 -----~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 152 -----DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp -----CEEECCHHHHTTCTTTGG
T ss_pred -----eEEEEecCCCCCHHHHHh
Confidence 689999999999987643
No 234
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.68 E-value=0.00013 Score=59.56 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=67.5
Q ss_pred eEEEEEEEc--cCCe---EEEEEEEEeeEecCCeEEecCCCC---eEEEEEEEECCccceeeCCCCEEEEEeccCCccCC
Q 011910 313 RMPIIDKFK--DMGT---VVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDI 384 (475)
Q Consensus 313 ~~~v~~~~~--~~G~---v~~g~v~~G~l~~gd~v~i~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i 384 (475)
+..|.++|+ ..|+ ++.++|..|.|+.+..+.+...+. ..++.|+.++..+|.++.+|.-|+|.|.+.+ .|+
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~fn-iDi 90 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEEK-VEF 90 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCTT-SCC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccCC-CCC
Confidence 566777774 4577 899999999999999999999884 4478999999999999999999999998653 179
Q ss_pred CceeEEecC
Q 011910 385 LSGFVLSSV 393 (475)
Q Consensus 385 ~~G~vl~~~ 393 (475)
+.||+|-.-
T Consensus 91 k~GDiIE~y 99 (120)
T 2crv_A 91 KPGDQVICY 99 (120)
T ss_dssp CTTEEEEEE
T ss_pred CCCCEEEEE
Confidence 999999653
No 235
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.67 E-value=2.7e-05 Score=77.86 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=62.0
Q ss_pred CCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhh
Q 011910 169 GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESK 248 (475)
Q Consensus 169 Gh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~ 248 (475)
..++|...+....+.+|++|+|+|+.+.. ..+. ....+. ..+.| +++|+||+|+..... ..+.+.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~--~~l~~~-----~~~~p-~ilV~NK~DL~~~~~---~~~~~~~~ 121 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWL--PGLHRF-----VGNNK-VLLVGNKADLIPKSV---KHDKVKHW 121 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCC--TTHHHH-----SSSSC-EEEEEECGGGSCTTS---CHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHH--HHHHHH-----hCCCc-EEEEEEChhcCCccc---CHHHHHHH
Confidence 34667766666667888999999998632 1111 111211 12566 889999999954321 12334444
Q ss_pred hhhHhhhhcCcccCCeeEEEeecccccccccccc
Q 011910 249 MTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (475)
Q Consensus 249 l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l~~ 282 (475)
+..+++..|+. ..+++.+||++|.|+.++.+
T Consensus 122 l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~~ 152 (368)
T 3h2y_A 122 MRYSAKQLGLK---PEDVFLISAAKGQGIAELAD 152 (368)
T ss_dssp HHHHHHHTTCC---CSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHcCCC---cccEEEEeCCCCcCHHHHHh
Confidence 45556666653 23789999999999998654
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.66 E-value=9.2e-05 Score=71.89 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=40.2
Q ss_pred CeeEEEEeCCCCcCcHHHHhh-----------c-cccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEE
Q 011910 159 TTRFTILDAPGHKSYVPNMIS-----------G-ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLL 225 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~-----------~-~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iiv 225 (475)
++.+.++||+|.......... + +..++.++|++|+..+. ...+.+..+. ..++. ++
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~---------~~~~~~~~~~~~~~~t--~i 252 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ---------NGLEQAKKFHEAVGLT--GV 252 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT---------HHHHHHHHHHHHHCCS--EE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH---------HHHHHHHHHHHHcCCc--EE
Confidence 345779999996543222111 1 23588899999998762 3444444443 45776 46
Q ss_pred EEEccCCC
Q 011910 226 VVNKMDDH 233 (475)
Q Consensus 226 viNKiD~~ 233 (475)
++||.|..
T Consensus 253 ivTh~d~~ 260 (304)
T 1rj9_A 253 IVTKLDGT 260 (304)
T ss_dssp EEECTTSS
T ss_pred EEECCccc
Confidence 89999973
No 237
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.51 E-value=0.00015 Score=77.27 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.2
Q ss_pred eeeEEEEecCCCCchhHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.+.|+|+|+.|||||||++.|.+
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHS
T ss_pred CCeEEEECCCCChHHHHHHHHhC
Confidence 34599999999999999999864
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.48 E-value=0.00015 Score=73.60 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=39.6
Q ss_pred CCeeEEEEeCCCCcCc----HHHHh--hccccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSY----VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f----~~~~~--~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviNKi 230 (475)
.++.+.||||||.... +..+. ..+..+|.++||+|+..+. .....+.... ..++. -|++||+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---------~av~~a~~f~~~l~i~--GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDEKVGVT--GLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---------HHHHHHHHHHHHTCCC--EEEEESG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---------HHHHHHHHHHhcCCce--EEEEeCc
Confidence 5678999999996544 22221 1223689999999997651 2333333222 23443 4689999
Q ss_pred CC
Q 011910 231 DD 232 (475)
Q Consensus 231 D~ 232 (475)
|.
T Consensus 248 D~ 249 (425)
T 2ffh_A 248 DG 249 (425)
T ss_dssp GG
T ss_pred CC
Confidence 97
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.46 E-value=0.00028 Score=68.47 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=21.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHH
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.+...|+++|+.|+||||++..|...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 34457899999999999999998654
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.40 E-value=0.00027 Score=69.15 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHH
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.+...|+++|..|+||||++..|...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999988654
No 241
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.35 E-value=6.5e-05 Score=71.40 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.8
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
.+++++|.+|+|||||+++|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 689999999999999999995
No 242
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.34 E-value=0.0002 Score=69.26 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=38.9
Q ss_pred CCeeEEEEeCCCCcCcHHH----Hhhccc--cCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 158 ETTRFTILDAPGHKSYVPN----MISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~----~~~~~~--~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
.++.+.|+||||....... +...+. .+|.+++|+|+..+.. ...+.......+++. -+++||+|
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~--------~~~~~~~~~~~l~~~--giVltk~D 250 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE--------DMKHIVKRFSSVPVN--QYIFTKID 250 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH--------HHHHHTTTTSSSCCC--EEEEECTT
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH--------HHHHHHHHHhcCCCC--EEEEeCCC
Confidence 5678999999997654322 222222 4678899999987631 122222222223443 35679999
Q ss_pred CC
Q 011910 232 DH 233 (475)
Q Consensus 232 ~~ 233 (475)
..
T Consensus 251 ~~ 252 (296)
T 2px0_A 251 ET 252 (296)
T ss_dssp TC
T ss_pred cc
Confidence 73
No 243
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.23 E-value=0.00049 Score=65.49 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=61.7
Q ss_pred CCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHH----HHH---HH-cCCceEEEEEEc-cCCCCCCc
Q 011910 167 APGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLA---KT-LGVTKLLLVVNK-MDDHTVNW 237 (475)
Q Consensus 167 tPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l----~~~---~~-~~i~~iivviNK-iD~~~~~~ 237 (475)
..|+..+...+-.....+|++|+|||+++..- -..++-+ .++ .. .++| ++|+.|| -|++.+-
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR-------leak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Am- 264 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM- 264 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCC-------CCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBC-
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH-------HHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCC-
Confidence 35788888888888999999999999987532 1133322 222 11 4788 8888897 5885442
Q ss_pred hHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
...++.+.+. |..+ . ....|.++||++|+|+.+-
T Consensus 265 ---s~~EI~e~L~--L~~l--~--r~W~Iq~csA~tGeGL~EG 298 (312)
T 3l2o_B 265 ---PCFYLAHELH--LNLL--N--HPWLVQDTEAETLTGFLNG 298 (312)
T ss_dssp ---CHHHHHHHTT--GGGG--C--SCEEEEEEETTTCTTHHHH
T ss_pred ---CHHHHHHHcC--CccC--C--CcEEEEecccCCCcCHHHH
Confidence 1234444432 2222 1 3678999999999999873
No 244
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.12 E-value=0.0014 Score=67.72 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=74.9
Q ss_pred HhhhcCCCCCCCCCCceEEEEEEEc--cCCeEEEEEEEEeeEecCCeEEecCCCC---eEEEEEEEECCccceeeCCCCE
Q 011910 297 ALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGEN 371 (475)
Q Consensus 297 ~l~~l~~~~~~~~~~~~~~v~~~~~--~~G~v~~g~v~~G~l~~gd~v~i~p~~~---~~~V~si~~~~~~v~~a~aG~~ 371 (475)
++..+-.|.....---...|..+|+ ..|.++.++|..|.|+.|..+.+...+. ..+|.||+++++++.++..|+-
T Consensus 394 ~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~e 473 (501)
T 1zo1_I 394 AMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGME 473 (501)
T ss_dssp HHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCC
T ss_pred HHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCE
Confidence 3443333433333334566778885 4599999999999999999999987773 6789999999999999999999
Q ss_pred EEEEeccCCccCCCceeEEecC
Q 011910 372 LRIRLSGIEEEDILSGFVLSSV 393 (475)
Q Consensus 372 v~i~l~~~~~~~i~~G~vl~~~ 393 (475)
|++.+.+. .+++.||+|-.-
T Consensus 474 cgi~~~~~--~~~~~gd~~~~~ 493 (501)
T 1zo1_I 474 CGIGVKNY--NDVRTGDVIEVF 493 (501)
T ss_dssp EEEEBCCC--TTCCTTCEEEEC
T ss_pred EEEEEcCc--CCCCCCCEEEEE
Confidence 99999976 479999998653
No 245
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.11 E-value=0.0014 Score=63.39 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+.-.++++|+.|||||||+..|...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998654
No 246
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.09 E-value=0.0016 Score=58.65 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=45.6
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC-----CceEEEEEEccCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-----VTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~-----i~~iivviNKiD~ 232 (475)
..+.+.|||||+... ......+..+|.+|+++.+.... ..+...+..+...+ ++ +.+|+|++|.
T Consensus 74 ~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~ 142 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--------FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIE 142 (206)
T ss_dssp TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--------HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCT
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--------HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCC
Confidence 357899999999763 34556677899999999887542 14555555555443 45 6889999995
No 247
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.03 E-value=0.0012 Score=65.42 Aligned_cols=84 Identities=26% Similarity=0.192 Sum_probs=52.8
Q ss_pred ccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCCCCCCchHHHHHHHHhhhhhHhhhhcCc
Q 011910 180 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (475)
Q Consensus 180 ~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 259 (475)
.+.++|.+++| +|..+.+ . .....+.+..+...+++ .|+|+||+|+... ...+. .+.+...+...|+
T Consensus 127 i~anvD~v~iv-~a~~P~~----~-~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~----~~~~~-~~~~~~~y~~~G~- 193 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPEL----S-LNIIDRYLVGCETLQVE-PLIVLNKIDLLDD----EGMDF-VNEQMDIYRNIGY- 193 (358)
T ss_dssp EEECCCEEEEE-EESTTTC----C-HHHHHHHHHHHHHHTCE-EEEEEECGGGCCH----HHHHH-HHHHHHHHHTTTC-
T ss_pred HHhcCCEEEEE-EeCCCCC----C-HHHHHHHHHHHHhcCCC-EEEEEECccCCCc----hhHHH-HHHHHHHHHhCCC-
Confidence 36789999976 5555543 1 12334455556667998 6899999999431 11111 2223334455554
Q ss_pred ccCCeeEEEeeccccccccccc
Q 011910 260 VKKDVQFLPISGLMGLNMKTRV 281 (475)
Q Consensus 260 ~~~~~~iipiSa~~g~gi~~l~ 281 (475)
+++++||.+|.|+.++.
T Consensus 194 -----~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 194 -----RVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp -----CEEECBTTTTBTHHHHH
T ss_pred -----cEEEEecCCCcCHHHHH
Confidence 68999999999998764
No 248
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.99 E-value=0.0016 Score=64.52 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+.-.|+++|+.|||||||++.|...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3457999999999999999998654
No 249
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.96 E-value=0.0022 Score=65.23 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.9
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHH
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..+...|+|+|..++|||||+|+|+..
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456778999999999999999999765
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.88 E-value=0.0017 Score=62.68 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=38.4
Q ss_pred CCeeEEEEeCCCCcCc----HHHHhhc--cccCCEEEEEEecCCCccccccCCCcchHHHHHHHH-HcCCceEEEEEEcc
Q 011910 158 ETTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f----~~~~~~~--~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~-~~~i~~iivviNKi 230 (475)
.++.+.|+||||.... +..+... ...+|.+++|+|+..+. ...+.+.... ..++. -+++||+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~---------~~~~~~~~~~~~~~i~--givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDEKVGVT--GLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCC--EEEEECG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcH---------HHHHHHHHHhhcCCCC--EEEEECC
Confidence 4678999999986533 2222111 12589999999987541 2333333322 23433 3689999
Q ss_pred CC
Q 011910 231 DD 232 (475)
Q Consensus 231 D~ 232 (475)
|.
T Consensus 248 d~ 249 (295)
T 1ls1_A 248 DG 249 (295)
T ss_dssp GG
T ss_pred CC
Confidence 97
No 251
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.61 E-value=0.0039 Score=65.04 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=76.2
Q ss_pred HHHHhhhcCCCCCCCCCCceEEEEEEEc---c--CCeEEEEEEEEeeEecCCeEEecCCCC---eEEEEEEEECCcccee
Q 011910 294 LFEALDRIEITPRDPNGPFRMPIIDKFK---D--MGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRH 365 (475)
Q Consensus 294 l~~~l~~l~~~~~~~~~~~~~~v~~~~~---~--~G~v~~g~v~~G~l~~gd~v~i~p~~~---~~~V~si~~~~~~v~~ 365 (475)
+.+.+..+-.|.....-.-++.|..+|+ + .|+++.++|..|.|+.|..+.+...+. ..++.||.+++.++.+
T Consensus 430 ~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~e 509 (537)
T 3izy_P 430 LQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSV 509 (537)
T ss_dssp HHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSE
T ss_pred HHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccce
Confidence 3344544444444444445788888884 2 578999999999999999999998874 5578899999999999
Q ss_pred eCCCCEEEEEecc-CCccCCCceeEEe
Q 011910 366 AGPGENLRIRLSG-IEEEDILSGFVLS 391 (475)
Q Consensus 366 a~aG~~v~i~l~~-~~~~~i~~G~vl~ 391 (475)
+..|.-|+|.+.+ . .+++.||+|-
T Consensus 510 v~~g~ecgi~~~~~~--~~~~~gd~ie 534 (537)
T 3izy_P 510 VKTGMDCGLSLDEEK--IEFKVGDAII 534 (537)
T ss_dssp EETTCEEEEESSSSC--SSCSCCCEEE
T ss_pred EcCCCEEEEEEcCcc--cCCCCCCEEE
Confidence 9999999999997 5 4799999984
No 252
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.57 E-value=0.0065 Score=55.24 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=46.7
Q ss_pred CCeeEEEEeCCCC-cCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-CCceEEEEEEccCC
Q 011910 158 ETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~~~~~liDtPGh-~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~-~i~~iivviNKiD~ 232 (475)
..+.+.|||||+. ... .+...+..+|.+|+++.+..... ..+...+..+... +.+ +.+++|++|.
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~vv~N~~~~ 132 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALAL-------DALMLTIETLQKLGNNR-FRILLTIIPP 132 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHH-------HHHHHHHHHHHHTCSSS-EEEEECSBCC
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhH-------HHHHHHHHHHHhccCCC-EEEEEEecCC
Confidence 4577999999997 443 23455678999999998875432 2455566666664 666 8899999997
No 253
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.44 E-value=0.014 Score=61.71 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=67.2
Q ss_pred CceEEEE--EEEc-cCCeEEEEEEEEeeEecCCeEEecCCC-CeEEEEEEEECCccceeeCCCCEEEEEeccCC-ccCCC
Q 011910 311 PFRMPII--DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDIL 385 (475)
Q Consensus 311 ~~~~~v~--~~~~-~~G~v~~g~v~~G~l~~gd~v~i~p~~-~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~-~~~i~ 385 (475)
|..+.|. .+|+ ..|.++.++|..|.|+.|..+.+ +.+ ...+|.||+++++++++|..|+-|+|.+.+.. ..+++
T Consensus 463 ~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~~ 541 (594)
T 1g7s_A 463 PASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIH 541 (594)
T ss_dssp CEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTBC
T ss_pred eEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCCC
Confidence 4455544 5774 35899999999999999999998 544 56789999999999999999999999998742 25799
Q ss_pred ceeEEecC
Q 011910 386 SGFVLSSV 393 (475)
Q Consensus 386 ~G~vl~~~ 393 (475)
.||+|-.-
T Consensus 542 ~~d~~~~~ 549 (594)
T 1g7s_A 542 EGDTLYVD 549 (594)
T ss_dssp TTCEEEEC
T ss_pred CCCEEEEE
Confidence 99998654
No 254
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.11 E-value=0.07 Score=49.99 Aligned_cols=65 Identities=9% Similarity=0.210 Sum_probs=44.6
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC--CceEEEEEEccCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~--i~~iivviNKiD~ 232 (475)
..+.+.|||||+.... .....+..||.+|+|+.+..... ......+..+...+ .+ +.+|+|+++.
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~-------~~~~~~~~~l~~~~~~~~-~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAV-------ESLDLFNFFVRKLNLFLP-IFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHH-------HHHHHHHHHHHTTTCCCC-EEEEEEEECT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHH-------HHHHHHHHHHHHHhccCC-EEEEEecccC
Confidence 3567999999996643 34455677999999999865432 23445555555554 45 6789999965
No 255
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.93 E-value=0.014 Score=56.28 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=43.2
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH----cCCceEEEEEEccCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~----~~i~~iivviNKiD~ 232 (475)
..+.+.|||||+..... .+...+..||.+|+|+.+..... ..+.+.+..+.. .+++.+-+|+|+++.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSI-------YAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHH-------HHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999999865432 22345688999999998764321 234444555554 345523389999995
No 256
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.75 E-value=0.0033 Score=60.84 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.7
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..++++|++|+|||||++.|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4789999999999999999853
No 257
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.48 E-value=0.06 Score=54.55 Aligned_cols=133 Identities=14% Similarity=0.093 Sum_probs=70.8
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCc---cchhhhhhccCchhhhhcceEEeeeeeEE
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR---ESWYMAYIMDTNEEERIKGKTVEVGRAHF 155 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~---~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 155 (475)
..+...|+|+|..++|||+|+|.|+...+.... ..+.|. ....+. ......-...||=+...+...
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~---------~~w~~~~~~~~~gF~--~~~~~~~~TkGIWmw~~p~~~ 132 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQES---------VDWVGDYNEPLTGFS--WRGGSERETTGIQIWSEIFLI 132 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTC---------TTTTCCTTCCCCSSC--CCCSSSCCCCSEEEESSCEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccc---------cccccccccCCCCce--eCCCCCCcCceEEEecCcccc
Confidence 567788999999999999999988643321000 000000 000011 111122234666665554444
Q ss_pred ee---CCeeEEEEeCCCCcCc-----HHHHhhccc--cCCEEEEEEecCCCccccccCCCcchHHHHHHHHHc-------
Q 011910 156 ET---ETTRFTILDAPGHKSY-----VPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------- 218 (475)
Q Consensus 156 ~~---~~~~~~liDtPGh~~f-----~~~~~~~~~--~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~------- 218 (475)
.. ....+.|+||.|..+- ....+.++. .+++.|+=+... +- .+..++|.+...+
T Consensus 133 ~~~~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~--i~-------~~~L~~L~~~tel~~~i~~~ 203 (457)
T 4ido_A 133 NKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQN--VQ-------EDDLQHLQLFTEYGRLAMEE 203 (457)
T ss_dssp ECTTSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESS--CC-------HHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeeccccc--CC-------HHHHHHHHHHHHHHHHHhhh
Confidence 33 2356999999996543 234455444 577766655443 21 3455555443322
Q ss_pred ----CCceEEEEEEccC
Q 011910 219 ----GVTKLLLVVNKMD 231 (475)
Q Consensus 219 ----~i~~iivviNKiD 231 (475)
-.|++++++-=.-
T Consensus 204 ~~~~~Fp~f~wlvRDf~ 220 (457)
T 4ido_A 204 TFLKPFQSLIFLVRDWS 220 (457)
T ss_dssp CSSCSEEEEEEEEETCC
T ss_pred cccccCCceEEEEecCC
Confidence 1457777774443
No 258
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.41 E-value=0.012 Score=56.79 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
..++++|+.|+|||||+++|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999996
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.30 E-value=0.0092 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHh
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
+++++|+.|||||||+..|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986554
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.11 E-value=0.0094 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=20.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..++|+|+.|||||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998654
No 261
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.08 E-value=0.011 Score=52.13 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..++|+|++|||||||++.|...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998654
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.76 E-value=0.018 Score=52.04 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=22.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
.+-..|+|+|++|||||||+..|....
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344679999999999999999886543
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.71 E-value=0.014 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.0
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..++++|+.|||||||++.|+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998654
No 264
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.71 E-value=0.049 Score=51.05 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=46.4
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
..+.+.|||||+...........+..+|.+|+|+.+..... ..+.+.+..+...+++.+-+|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTA-------VIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCH-------HHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchH-------HHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56789999999976543222223346899999998775432 245666667777788833389999984
No 265
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.69 E-value=0.015 Score=52.10 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..++++|+.|||||||+..|...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999998654
No 266
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.66 E-value=0.045 Score=50.45 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=49.3
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
..+.+.|||||+.... .+...+..+|.+|+|+.+..... ..+.+.+.++..++++.+.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSI-------KTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHH-------HHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 5678999999986544 34455688999999999865432 245556667777888778899999994
No 267
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.60 E-value=0.015 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.135 Sum_probs=20.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
-.++|+|+.|||||||++.|...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998654
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.52 E-value=0.018 Score=50.05 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=21.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+++|.+|||||||...|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999876555
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.49 E-value=0.022 Score=51.39 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.0
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...|+|+|+.|||||||++.|....+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999876543
No 270
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.47 E-value=0.017 Score=52.84 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.6
Q ss_pred eeeEEEEecCCCCchhHHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
-..++|+|+.|||||||++.|...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999998654
No 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.41 E-value=0.022 Score=51.29 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.9
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
+-..|+|+|+.|+|||||+++|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44578999999999999999997543
No 272
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.37 E-value=0.019 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..|+++|++|||||||+..|...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999998653
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.36 E-value=0.017 Score=50.49 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.4
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
-.++++|+.|||||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999753
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.35 E-value=0.023 Score=49.15 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|+|.+||||||+...|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999866544
No 275
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.30 E-value=0.02 Score=49.57 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.5
Q ss_pred eeeEEEEecCCCCchhHHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
--.++++|+.|||||||+..|...
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998544
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.29 E-value=0.024 Score=50.78 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.9
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
...|+++|.+|||||||+..|....|.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 357999999999999999999766554
No 277
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.26 E-value=0.023 Score=51.36 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
+...|+++|++|||||||+..|+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34579999999999999999996543
No 278
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.26 E-value=0.021 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHh
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
..++|+|+.|||||||++.|+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999986543
No 279
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.23 E-value=0.03 Score=48.83 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
...|+++|++|||||||+..|....|.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 357999999999999999998665543
No 280
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.11 E-value=0.027 Score=50.46 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...|+|+|.+|||||||...|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999876654
No 281
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.10 E-value=0.026 Score=52.37 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=23.5
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhccc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQV 109 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~~ 109 (475)
...|+|+|+.|||||||+..|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4579999999999999999997555543
No 282
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.06 E-value=0.067 Score=48.95 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=48.4
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.+.|||+|+... ......+..+|.+|+|+.+..... ..+.+.+..+...+.+.+-+|+||++.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCL-------TDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHH-------HHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccH-------HHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 46799999998655 345566788999999998765432 245566667777787767789999996
No 283
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.00 E-value=0.0083 Score=61.69 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHH
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.....|.++|.+||||||+..+|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999999998543
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.94 E-value=0.028 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+++|.+||||||+...| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 46899999999999999998 5544
No 285
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.87 E-value=0.024 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.191 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++|+|+.|||||||++.|..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999998843
No 286
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.82 E-value=0.03 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+.|+|+|++|+|||||+++|+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999754
No 287
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.81 E-value=0.03 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=19.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
-.++++|+.|||||||+..|...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999988543
No 288
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.80 E-value=0.032 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.1
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..|+++|++|||||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998543
No 289
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.79 E-value=0.033 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|+|++||||||+...|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999876554
No 290
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.76 E-value=0.027 Score=51.78 Aligned_cols=20 Identities=35% Similarity=0.195 Sum_probs=18.3
Q ss_pred eEEEEecCCCCchhHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll 103 (475)
.++++|+.|||||||++.|.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999884
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.76 E-value=0.034 Score=48.96 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
...++|+|..|||||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999954
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.76 E-value=0.035 Score=48.82 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.5
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..+|+++|.+||||||+...|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976655
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.68 E-value=0.037 Score=49.52 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
+...|+++|.+||||||+...|....+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 445899999999999999999976655
No 294
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.64 E-value=0.081 Score=49.36 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=48.0
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
.+.+.|||+|+... ......+..+|.+|+|+.+..... ..+...+..+...+.+.+-+|+|++|.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSI-------TDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHH-------HHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 56799999998655 445566788999999998765322 245566666666687767789999996
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.63 E-value=0.038 Score=48.40 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=20.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
....++|+|..|||||||+.+|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999854
No 296
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.60 E-value=0.03 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.1
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|++|||||||+..|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999864
No 297
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.56 E-value=0.042 Score=50.99 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=23.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
+...|+|+|+.|||||||++.|....|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 3357999999999999999998776553
No 298
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.52 E-value=0.032 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.175 Sum_probs=19.6
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999998853
No 299
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.50 E-value=0.037 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.1
Q ss_pred eeeEEEEecCCCCchhHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
--.++|+|+.|||||||+..|+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 34799999999999999999854
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.48 E-value=0.041 Score=48.97 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=21.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.|+|+|.+||||||+...|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999876554
No 301
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.48 E-value=0.037 Score=49.73 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
+...|+++|++|||||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34578999999999999999996543
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.48 E-value=0.038 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.3
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.++++|+.|+|||||+..|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988543
No 303
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.45 E-value=0.035 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+--.++|+|+.|||||||+..|+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3346999999999999999998654
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.41 E-value=0.047 Score=48.77 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=24.1
Q ss_pred CcceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 79 ~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
......|+|.|.+||||||+...|....|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34556899999999999999999876555
No 305
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.37 E-value=0.046 Score=48.19 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=22.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...|+++|.+||||||+...|....+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999876555
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.36 E-value=0.05 Score=48.00 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...|+++|.+||||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999866554
No 307
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.35 E-value=0.051 Score=47.74 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.0
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...|+++|.+||||||+...|....|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999875554
No 308
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.33 E-value=0.035 Score=54.71 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.3
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|++|+|||||++.|+.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 689999999999999999964
No 309
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.33 E-value=0.17 Score=48.14 Aligned_cols=65 Identities=8% Similarity=0.080 Sum_probs=48.9
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
+.+.|||||......... ..+..+|.+|+|+.+..... ....+.+..+...+.+.+-+|+||+|.
T Consensus 202 yD~VIIDtpp~~~~~da~-~l~~~aD~vllVv~~~~~~~-------~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 202 YDLVLIDTPPILAVTDAA-IVGRHVGTTLMVARYAVNTL-------KEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp CSEEEEECCCTTTCTHHH-HHTTTCSEEEEEEETTTSBH-------HHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred CCEEEEcCCCCcchHHHH-HHHHHCCeEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 559999999976554332 33567999999999876532 356677777888888866789999997
No 310
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.31 E-value=0.046 Score=48.08 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|.|.+||||||+...|....+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999976554
No 311
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.30 E-value=0.036 Score=51.43 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.8
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
-.++|+|+.|||||||++.|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999883
No 312
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.26 E-value=0.037 Score=51.05 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=18.4
Q ss_pred eEEEEecCCCCchhHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll 103 (475)
.++|+|+.|||||||++.|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999884
No 313
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.22 E-value=0.037 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++|+|+.|||||||++.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998843
No 314
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.22 E-value=0.035 Score=52.43 Aligned_cols=22 Identities=36% Similarity=0.181 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999998843
No 315
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.20 E-value=0.049 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+...++|+|..|||||||+++|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4668899999999999999999753
No 316
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.18 E-value=0.025 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.6
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..++|+|..|||||||+..|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 317
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.17 E-value=0.037 Score=50.51 Aligned_cols=20 Identities=35% Similarity=0.257 Sum_probs=18.4
Q ss_pred eEEEEecCCCCchhHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll 103 (475)
.++|+|+.|||||||++.|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999884
No 318
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.17 E-value=0.036 Score=52.68 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=18.8
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||++.|..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998843
No 319
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.17 E-value=0.036 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.208 Sum_probs=18.7
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
-.++|+|+.|||||||++.|.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999884
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.17 E-value=0.031 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=15.7
Q ss_pred eeeEEEEecCCCCchhHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll 103 (475)
-..++|+|+.|||||||++.|.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999986
No 321
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.16 E-value=0.056 Score=47.62 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.7
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHH
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.+...|+++|.+||||||+...|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34567999999999999999988543
No 322
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.16 E-value=0.038 Score=51.89 Aligned_cols=21 Identities=33% Similarity=0.227 Sum_probs=18.8
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|+.|||||||++.|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998843
No 323
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.14 E-value=0.05 Score=48.70 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=22.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
.+...|+|+|.+|||||||...|....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999885443
No 324
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.13 E-value=0.04 Score=51.51 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=19.2
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||++.|..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999855
No 325
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.11 E-value=0.039 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.9
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||++.|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998843
No 326
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.09 E-value=0.05 Score=49.15 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
+|+|.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999998766553
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.09 E-value=0.054 Score=47.88 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
+...|+++|.+||||||+...|....+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999876555
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.08 E-value=0.052 Score=52.53 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=22.5
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
.+...|+|+|+.|||||||++.|....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 444679999999999999999886643
No 329
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.06 E-value=0.041 Score=51.13 Aligned_cols=21 Identities=43% Similarity=0.357 Sum_probs=18.8
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|+.|||||||++.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998843
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.06 E-value=0.044 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+++|..||||||+...|.. .|
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg 26 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG 26 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC
Confidence 4799999999999999998865 44
No 331
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.04 E-value=0.045 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.7
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..|+++|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999865
No 332
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.02 E-value=0.05 Score=47.81 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=21.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|.|.+||||||+...|....+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999976555
No 333
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.02 E-value=0.044 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.9
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.+|+|+|..||||||+...|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999866
No 334
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.97 E-value=0.042 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++|+|+.|||||||++.|..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998843
No 335
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.95 E-value=0.055 Score=49.15 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=23.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
+..+|+++|.+||||||+...|....+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3468999999999999999998766553
No 336
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.93 E-value=0.043 Score=51.74 Aligned_cols=21 Identities=38% Similarity=0.254 Sum_probs=18.7
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
-.++|+|+.|||||||++.|.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEEcCCCCcHHHHHHHHH
Confidence 358999999999999999884
No 337
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.87 E-value=0.053 Score=48.25 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHH
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.+...|+|+|.+||||||+...|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34568999999999999999988665
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.86 E-value=0.063 Score=48.07 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.2
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...|+|.|.+||||||+...|....+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999976554
No 339
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.86 E-value=0.046 Score=51.65 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=19.1
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||++.|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998854
No 340
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.85 E-value=0.056 Score=47.09 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=21.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|.++|.+||||||+...|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999865543
No 341
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.84 E-value=0.062 Score=52.19 Aligned_cols=27 Identities=33% Similarity=0.274 Sum_probs=22.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
.....|+|+|++|||||||+..|....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445679999999999999999886554
No 342
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.83 E-value=0.059 Score=47.17 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..+|+++|.+||||||+...|....+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999865544
No 343
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.83 E-value=0.055 Score=50.56 Aligned_cols=28 Identities=18% Similarity=-0.021 Sum_probs=23.2
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
+...|+|+|+.|||||||+..|....|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3458999999999999999998755553
No 344
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.82 E-value=0.046 Score=51.35 Aligned_cols=21 Identities=38% Similarity=0.232 Sum_probs=18.8
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||++.|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998843
No 345
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.80 E-value=0.046 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=18.8
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|+.|||||||++.|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 589999999999999998843
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.72 E-value=0.056 Score=48.54 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.0
Q ss_pred eeeEEEEecCCCCchhHHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
...|+|+|.+|||||||+..|...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998654
No 347
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.71 E-value=0.048 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.0
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
-.++++|+.|||||||+..|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 368999999999999999886
No 348
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.71 E-value=0.048 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++|+|+.|||||||++.|..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999998843
No 349
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.70 E-value=0.061 Score=46.86 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.+|+|+|.+||||||+...|....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3799999999999999999876655
No 350
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.67 E-value=0.056 Score=48.85 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
+|+|+|.+||||||+...|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999998765553
No 351
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.66 E-value=0.054 Score=49.18 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.4
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++|+|+.|||||||+..|..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 352
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.66 E-value=0.16 Score=46.02 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
....+.+.|++|+|||||+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998854
No 353
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.61 E-value=0.05 Score=51.34 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=19.1
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3689999999999999998843
No 354
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.60 E-value=0.051 Score=51.74 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=18.8
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||++.|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 589999999999999998843
No 355
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.58 E-value=0.061 Score=47.69 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.5
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...|+++|.+||||||+...|....+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999876655
No 356
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.57 E-value=0.066 Score=51.23 Aligned_cols=27 Identities=37% Similarity=0.276 Sum_probs=22.3
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
.+...|+|+|++|||||||+..|....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445689999999999999999886543
No 357
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.57 E-value=0.052 Score=50.85 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.3
Q ss_pred eEEEEecCCCCchhHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll 103 (475)
.++++|+.|||||||++.|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999884
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.49 E-value=0.076 Score=49.27 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=23.7
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
+..+|+|.|.+||||||+...|....+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999765553
No 359
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.49 E-value=0.086 Score=48.12 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=23.8
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
++...|.|+|++||||+|....|....|.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 34457889999999999999999776654
No 360
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.42 E-value=0.073 Score=46.93 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCCchhHHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..+|+++|.+||||||+...|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998665
No 361
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.39 E-value=0.058 Score=47.18 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=17.6
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...|.+.|.+||||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999865444
No 362
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.39 E-value=0.055 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-+++|+|+.|||||||++.|+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999854
No 363
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.39 E-value=0.074 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=19.9
Q ss_pred eeeEEEEecCCCCchhHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
...++++|++|+|||||+..+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998843
No 364
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.37 E-value=0.071 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
....++++|++|+|||||+.++...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988543
No 365
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.36 E-value=0.08 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=22.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
+...|+|+|+.|||||||+..|....+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999876543
No 366
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.34 E-value=0.075 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=21.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHh
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
...|++.|.+||||||+...|....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999986543
No 367
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.32 E-value=0.33 Score=45.12 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=42.2
Q ss_pred CCeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH------cCCceEEEEEEccC
Q 011910 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 231 (475)
Q Consensus 158 ~~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~------~~i~~iivviNKiD 231 (475)
..+.+.|||||+..... ....+..||.+|+|+.+..... ..+...+..+.. .+++.+-+|+|+.|
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~ 180 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYAL-------EGVAGLLATLEEVRAGLNPRLRLLGILVTMYD 180 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHH-------HHHHHHHHHHHHHHHHTCTTCEEEEEEEESBC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHH-------HHHHHHHHHHHHHHHHhCCCceEEEEEEEeEC
Confidence 56789999999976543 3445678999999999875322 122333333322 14552238999998
Q ss_pred C
Q 011910 232 D 232 (475)
Q Consensus 232 ~ 232 (475)
.
T Consensus 181 ~ 181 (257)
T 1wcv_1 181 G 181 (257)
T ss_dssp T
T ss_pred C
Confidence 6
No 368
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.32 E-value=0.12 Score=51.97 Aligned_cols=25 Identities=36% Similarity=0.252 Sum_probs=21.0
Q ss_pred cceeeEEEEecCCCCchhHHHHHHH
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.....|+++|.+||||||+...|..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999999843
No 369
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.29 E-value=0.082 Score=47.19 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.1
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.....|+++|.+||||||+...|....+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445799999999999999999876554
No 370
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.27 E-value=0.07 Score=48.74 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.3
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...|+|+|.+||||||+...|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999876554
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.26 E-value=0.095 Score=46.01 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.9
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|++.|.+||||||+...|....+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999876555
No 372
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.25 E-value=0.076 Score=48.26 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
..|+|+|.+||||||+...|....+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999766653
No 373
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.25 E-value=0.059 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.063 Sum_probs=19.4
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..++++|++|+|||||++.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 3689999999999999999853
No 374
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.22 E-value=0.076 Score=49.46 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.0
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
+...|+|.|.+||||||+...|....|
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 446899999999999999999876555
No 375
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.21 E-value=0.078 Score=47.62 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.5
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHh
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
...|+|.|.+||||||+...|....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999986543
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.20 E-value=0.073 Score=47.70 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+...|+|+|..|||||||+..|...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988653
No 377
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.14 E-value=0.071 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.275 Sum_probs=20.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
-.|+|+|+.|||||||+..|+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999998543
No 378
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.13 E-value=0.076 Score=46.48 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=20.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..+|+|+.|||||||+.+|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999966544
No 379
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.04 E-value=0.065 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998843
No 380
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.03 E-value=0.087 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
+|++.|.+||||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999866554
No 381
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.02 E-value=0.053 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.5
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-+++|+|+.|||||||++.|+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999998843
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.98 E-value=0.088 Score=47.57 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
+|+|.|.+||||||+...|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976555
No 383
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.98 E-value=0.069 Score=51.11 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.8
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
-.++|+|+.|||||||++.|.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999884
No 384
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.96 E-value=0.088 Score=45.42 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=21.8
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.-+|++.|.+||||||+...|....|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999998876555
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.95 E-value=0.042 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.4
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.|+|+|..|||||||+..|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998543
No 386
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.92 E-value=0.066 Score=52.90 Aligned_cols=21 Identities=33% Similarity=0.186 Sum_probs=18.9
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||++.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 589999999999999998854
No 387
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.89 E-value=0.084 Score=46.27 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|+|.+||||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999876555
No 388
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.87 E-value=0.045 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++|+|+.|||||||++.|..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 3699999999999999998843
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.87 E-value=0.078 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.2
Q ss_pred eeeEEEEecCCCCchhHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.-.|+|+|+.|||||||++.|+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999854
No 390
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.82 E-value=0.078 Score=47.23 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHh
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
...|++.|.+||||||+...|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999986554
No 391
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.80 E-value=0.1 Score=47.34 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.2
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..+|+++|.+||||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999876555
No 392
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.79 E-value=0.09 Score=45.43 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|++.|.+||||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999876555
No 393
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.73 E-value=0.073 Score=52.46 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.9
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|+.|||||||++.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 589999999999999998854
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.64 E-value=0.098 Score=48.29 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=23.0
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
....|+|.|++||||||+...|....|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999998766553
No 395
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.58 E-value=0.1 Score=48.71 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|+|++|||||||...|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999965544
No 396
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.54 E-value=0.12 Score=46.27 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=23.4
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.-+..|++.|..||||||+...|....|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999876544
No 397
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.51 E-value=0.1 Score=47.14 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=21.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhcc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
+|.++|++||||+|....|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999877664
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.44 E-value=0.1 Score=48.80 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.9
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
-.+|+|+|.+||||||+...|....|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 458999999999999999998765553
No 399
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.41 E-value=0.39 Score=45.92 Aligned_cols=65 Identities=12% Similarity=0.049 Sum_probs=48.4
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
+.+.|||||+........ ..+..+|.+|+|+.+..... ....+.+..+...+++.+=+|+|++|.
T Consensus 214 yD~VIIDtpp~~~~~d~~-~l~~~ad~vilV~~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSDAA-VVGRSVGTSLLVARFGLNTA-------KEVSLSMQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp CSEEEEECCCTTTCTHHH-HHGGGCSEEEEEEETTTSCT-------THHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred CCEEEEcCCCCchhHHHH-HHHHHCCEEEEEEcCCCChH-------HHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 569999999976544332 23467999999999876532 467777888888887744478999996
No 400
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.38 E-value=0.081 Score=52.09 Aligned_cols=21 Identities=29% Similarity=0.196 Sum_probs=18.9
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|+.|||||||++.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 589999999999999998853
No 401
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.35 E-value=0.078 Score=52.40 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.9
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...++|+|+.|||||||+..|.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999866543
No 402
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.33 E-value=0.12 Score=49.36 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.2
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
....|.++|.+|||||||...|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999997654
No 403
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.32 E-value=0.091 Score=48.99 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=22.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
....|.++|.+||||||+...|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346799999999999999999865543
No 404
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.32 E-value=0.083 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.160 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 3589999999999999998854
No 405
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.30 E-value=0.29 Score=46.14 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=46.2
Q ss_pred eeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccCC
Q 011910 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (475)
Q Consensus 160 ~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD~ 232 (475)
+.+.|||||+....... ...+..+|.+|+|+.+..... ....+.+..+...+++.+=+|+|++|.
T Consensus 192 yD~VIIDtpp~~~~~d~-~~l~~~aD~vilVv~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTDA-QLFSKFTGNVVYVVNSENNNK-------DEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTCSHH-HHHHHHHCEEEEEEETTSCCH-------HHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchHHHH-HHHHHHCCEEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 56999999997654322 223457899999999876532 356666667777788744489999997
No 406
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.28 E-value=0.12 Score=45.52 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHh
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
.|++.|.+||||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999986543
No 407
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.28 E-value=0.077 Score=54.99 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.1
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
.+++|+|+.|||||||+++|+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999984
No 408
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.22 E-value=0.11 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=20.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHh
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
.|++.|..||||||++..|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999986544
No 409
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.21 E-value=0.18 Score=46.25 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=46.9
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcC--CceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~--i~~iivviNKiD~ 232 (475)
.+.+.|||||+.... .....+..+|.+|+|+.+..... ..+...+..+...+ .+.+-+|+|+++.
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSL-------RRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHH-------HHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 466999999986543 34455778999999998765332 35566666676666 4457889999996
No 410
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.19 E-value=0.1 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.9
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..|+|.|..||||||+...|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 411
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.14 E-value=0.088 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 3589999999999999998854
No 412
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.13 E-value=0.089 Score=52.29 Aligned_cols=21 Identities=43% Similarity=0.371 Sum_probs=18.9
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|+.|||||||++.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 589999999999999998854
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.13 E-value=0.12 Score=47.34 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...+|+++|.+||||||+...|....+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999976655
No 414
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.11 E-value=0.088 Score=48.28 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHH
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.+-..|+|.|..|||||||++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34467999999999999999988655
No 415
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.05 E-value=0.091 Score=52.13 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.9
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|+.|||||||++.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHc
Confidence 589999999999999998853
No 416
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.04 E-value=0.11 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.174 Sum_probs=20.7
Q ss_pred eeeEEEEecCCCCchhHHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.-.|+|+|+.|||||||+..|+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 346999999999999999998654
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.01 E-value=0.12 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.|+|.|.+||||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999876554
No 418
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.00 E-value=0.093 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 3589999999999999998854
No 419
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.90 E-value=0.11 Score=45.27 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=20.2
Q ss_pred eeeEEEEecCCCCchhHHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
-..|+++|..||||||+...|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988543
No 420
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.71 E-value=0.11 Score=49.68 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=19.6
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
+...|+|.|..||||||+...|....+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999876544
No 421
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.68 E-value=0.14 Score=48.66 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.6
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.+...|+|.|.+||||||+...|. ..|
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCC
Confidence 445689999999999999999886 444
No 422
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.66 E-value=0.12 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.6
Q ss_pred eeeEEEEecCCCCchhHHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
...|+++|.+||||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998543
No 423
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.46 E-value=0.22 Score=48.20 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.3
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.+.|.|++|+|||||.-++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999988854
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.41 E-value=0.15 Score=43.44 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHh
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
..+|+|+.|+|||||+++|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999996544
No 425
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.40 E-value=0.12 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 3589999999999999998854
No 426
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.28 E-value=0.13 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.2
Q ss_pred eeeEEEEecCCCCchhHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-..++|+|+.|||||||+..|..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999998864
No 427
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.28 E-value=0.14 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.++++|++|+|||||+.+|....+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Confidence 399999999999999999866543
No 428
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.18 E-value=0.079 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 3589999999999999998854
No 429
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.04 E-value=0.16 Score=45.85 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|++|+|||||+..|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 430
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.02 E-value=0.17 Score=45.50 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=20.9
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
+...|+++|.+||||||+...|...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988543
No 431
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.87 E-value=0.27 Score=45.44 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=44.2
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCC--------ceEEEEEEcc
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV--------TKLLLVVNKM 230 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i--------~~iivviNKi 230 (475)
.+.+.|||||+... ......+..+|.+|+|+.+..... ..+...+..+...+. ..+-+|+|++
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSV-------RDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHH-------HHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHH-------HHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 67899999998654 345566779999999999865322 234444444443331 3477899999
Q ss_pred CC
Q 011910 231 DD 232 (475)
Q Consensus 231 D~ 232 (475)
|.
T Consensus 184 ~~ 185 (260)
T 3q9l_A 184 NP 185 (260)
T ss_dssp CH
T ss_pred Cc
Confidence 85
No 432
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.77 E-value=0.18 Score=44.81 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.|+|.|.+||||||+...|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999876555
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.75 E-value=0.19 Score=46.07 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
+...|+|+|..||||||+...|....|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345799999999999999999876555
No 434
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.60 E-value=0.22 Score=45.68 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=22.6
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
+...|+|.|.+||||||++..|....+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 446799999999999999999866543
No 435
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.53 E-value=0.71 Score=43.71 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=42.9
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHH------cCCceEEEEEEccCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 232 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~------~~i~~iivviNKiD~ 232 (475)
.+.+.|||||+..... ...++..+|.+|+++.+..... ..+...+..+.. .+++.+-+|+|++|.
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEEST-------NNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCH-------HHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHH-------HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 4679999999976553 2334557999999999876432 233334444433 256634588999996
No 436
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.44 E-value=0.82 Score=48.06 Aligned_cols=179 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred ccCCcceeeEEEEecCCCCchhHHHHHHHHhcccchHHHHHHHHHHhhcCccchhhhhhccCchhhhhcceEEeeeeeEE
Q 011910 76 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 155 (475)
Q Consensus 76 ~~~~~~~~~v~ivG~~~sGKSTL~~~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 155 (475)
.+.....+.+.+.|..|+||||+.-.| -......|+.......-. .......-|.........+
T Consensus 2 ~~~~~~~~i~~~sgkGGvGKTT~a~~l---------------A~~lA~~G~rVLlvd~D~-~~~l~~~l~~~~~~~~~~v 65 (589)
T 1ihu_A 2 QFLQNIPPYLFFTGKGGVGKTSISCAT---------------AIRLAEQGKRVLLVSTDP-ASNVGQVFSQTIGNTIQAI 65 (589)
T ss_dssp GGGSSCCSEEEEECSTTSSHHHHHHHH---------------HHHHHHTTCCEEEEECCT-TCCHHHHTTSCCCSSCEEC
T ss_pred CCCCCCCEEEEEeCCCcCHHHHHHHHH---------------HHHHHHCCCcEEEEECCC-CcCHHHHhCCcccCCCcee
Q ss_pred e------------------------------------------------------------------eCCeeEEEEeCCC
Q 011910 156 E------------------------------------------------------------------TETTRFTILDAPG 169 (475)
Q Consensus 156 ~------------------------------------------------------------------~~~~~~~liDtPG 169 (475)
. ...+.+.++|||+
T Consensus 66 ~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P 145 (589)
T 1ihu_A 66 ASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAP 145 (589)
T ss_dssp TTSTTEEEEECCHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCC
T ss_pred ccchhhhhccCCHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCC
Q ss_pred CcCcHHHHh----------------------------------hccccCC----EEEEEEecCCCccccccCCCcchHHH
Q 011910 170 HKSYVPNMI----------------------------------SGASQAD----IGVLVISARKGEFETGFEKGGQTREH 211 (475)
Q Consensus 170 h~~f~~~~~----------------------------------~~~~~~D----~~vlVVda~~g~~e~~~~~~~~t~~~ 211 (475)
-..-+.... .....+| .+++|+.+..... ..+.+.
T Consensus 146 ~~~~lrll~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~-------~~~~~~ 218 (589)
T 1ihu_A 146 TGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTL-------QEVART 218 (589)
T ss_dssp CHHHHHHHHCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHH-------HHHHHH
T ss_pred chhHHHHHHhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHH-------HHHHHH
Q ss_pred HHHHHHcCCceEEEEEEccCCCCC----CchHHHHHHHHhhhhhHhhhhcCcccCCeeEEEeecccccccccc
Q 011910 212 VMLAKTLGVTKLLLVVNKMDDHTV----NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (475)
Q Consensus 212 l~~~~~~~i~~iivviNKiD~~~~----~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~iipiSa~~g~gi~~l 280 (475)
+..+...|++..-+|+|++.-... .|...+++...+.+..+-..++-- .+..+|.-+..-.|+..+
T Consensus 219 ~~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~i~~vPl~~~e~~g~~~l 288 (589)
T 1ihu_A 219 HLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGL---PTDTLFLQPVNMVGVSAL 288 (589)
T ss_dssp HHHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCHHHHTS---CEEEEECCSSCCCSHHHH
T ss_pred HHHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHHhccCC---CEEEecCCCCCCCCHHHH
No 437
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.38 E-value=0.08 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.122 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3589999999999999998843
No 438
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.27 E-value=0.19 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.121 Sum_probs=20.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
-.++|+|+.|+|||||++.|...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999998654
No 439
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.23 E-value=0.19 Score=46.63 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHh
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
.++++|++|+|||||+.++....
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999986543
No 440
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.19 E-value=0.19 Score=47.84 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=19.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
-.++|+|++|+|||||+..|...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36899999999999999988543
No 441
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.09 E-value=0.51 Score=44.63 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.7
Q ss_pred CeeEEEEeCCCCcCcHHHHhhccccCCEEEEEEecCC
Q 011910 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 195 (475)
Q Consensus 159 ~~~~~liDtPGh~~f~~~~~~~~~~~D~~vlVVda~~ 195 (475)
.+.+.|||||+.. ...+...+..||.+|+|+.+..
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 4679999999975 3445667789999999998754
No 442
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.99 E-value=0.18 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.249 Sum_probs=20.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHHh
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
-.++|+|+.|||||||++.|....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 578999999999999999886543
No 443
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.77 E-value=0.22 Score=48.45 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHHh
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
..++++|++|+|||||+..+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 568999999999999999987655
No 444
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.53 E-value=1.2 Score=43.62 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.6
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
..+.|.|++|+|||||+-+++
T Consensus 62 ~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998884
No 445
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.51 E-value=0.22 Score=44.73 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=19.1
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|++|+|||||+..|..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 446
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.39 E-value=0.28 Score=42.44 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
...++.+.|++|+|||+|+..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998854
No 447
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.33 E-value=0.23 Score=49.05 Aligned_cols=22 Identities=36% Similarity=0.267 Sum_probs=19.0
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
.++|+|+.|||||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4669999999999999998654
No 448
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.20 E-value=0.85 Score=41.61 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=17.1
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
..+.+.|++|+||||++-.++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 467889999999999876553
No 449
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.17 E-value=0.24 Score=46.66 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHh
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
.++++|++|+|||||+.+|....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 49999999999999999986543
No 450
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.07 E-value=0.27 Score=48.72 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
+...++++|++|+|||||+..|....
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33578999999999999999986543
No 451
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.06 E-value=0.21 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=19.6
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999854
No 452
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.06 E-value=0.25 Score=45.07 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++|+|++|+|||||+..|+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999998854
No 453
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.98 E-value=0.3 Score=44.90 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=22.1
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
-+.+++++|.+||||||+...|....+
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999876655
No 454
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.90 E-value=0.21 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.5
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998854
No 455
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.78 E-value=0.27 Score=49.86 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
-.++|+|+.|+|||||++.|...
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36999999999999999988654
No 456
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.77 E-value=0.23 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.4
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3689999999999999998854
No 457
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.66 E-value=0.27 Score=44.09 Aligned_cols=26 Identities=27% Similarity=0.089 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhcc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSGQ 108 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g~ 108 (475)
...+|+|+.|+|||||++++.+..+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 35689999999999999999765543
No 458
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.66 E-value=0.23 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998843
No 459
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.58 E-value=0.33 Score=45.01 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.4
Q ss_pred eeeEEEEecCCCCchhHHHHHHHH
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
...|.+.|++|+|||||+.+|...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998543
No 460
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.57 E-value=0.22 Score=51.89 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=19.6
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999998854
No 461
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.32 E-value=0.25 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.5
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4699999999999999998853
No 462
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.22 E-value=0.28 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.7
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..|.++|.+||||||+...|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 463
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.16 E-value=2.3 Score=43.81 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.1
Q ss_pred eeeEEEEecCCCCchhHHHHHHHHh
Q 011910 82 HLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 82 ~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
...+.+.|++|+|||||+.++....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999885443
No 464
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.13 E-value=0.25 Score=52.28 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=19.4
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|+.|||||||++.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999999865
No 465
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=87.04 E-value=0.29 Score=48.23 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred cceeeEEEEecCCCCchhHHHHHH
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll 103 (475)
++..+|.++|..+||||||+.+|-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 456889999999999999999874
No 466
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.95 E-value=0.34 Score=47.23 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.7
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|+|+++||||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999876554
No 467
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.95 E-value=0.32 Score=43.73 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.6
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|+|.+||||||+...|....|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999998866555
No 468
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.89 E-value=0.36 Score=42.79 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=19.7
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++.+.|++|+|||||+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998843
No 469
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.84 E-value=0.36 Score=46.76 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.3
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|+|++|||||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999865543
No 470
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.65 E-value=0.21 Score=46.73 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=21.9
Q ss_pred cceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 80 ~~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
++...|+|.|..||||||++..|....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345689999999999999999885543
No 471
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.63 E-value=0.32 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..++|+|++|+|||||+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 472
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.41 E-value=0.3 Score=50.88 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=19.0
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||+..|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998854
No 473
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.33 E-value=0.33 Score=41.85 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.4
Q ss_pred ceeeEEEEecCCCCchhHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
...++.+.|++|+|||||+..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998843
No 474
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.28 E-value=0.3 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.5
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 3689999999999999998854
No 475
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.02 E-value=0.32 Score=50.70 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=18.8
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||+..|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998843
No 476
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=85.99 E-value=4.3 Score=37.54 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=40.5
Q ss_pred CeeEEEEeCCCCcC--c----HHHHhhccccCCEEEEEEecCCCccccccCCCcchHHHHHHHHHcCCceEEEEEEccC
Q 011910 159 TTRFTILDAPGHKS--Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (475)
Q Consensus 159 ~~~~~liDtPGh~~--f----~~~~~~~~~~~D~~vlVVda~~g~~e~~~~~~~~t~~~l~~~~~~~i~~iivviNKiD 231 (475)
.+.+.+||.||--- + ..+.--+.....-+|||+|+..|.. ..+...+..+...+++-.=+++||+.
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i-------~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTL-------NHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHH-------HHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccH-------HHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 46699999997421 0 0111111123456899999987643 34555556666778874457889985
No 477
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.96 E-value=0.38 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=20.9
Q ss_pred eeEEEEecCCCCchhHHHHHHHHh
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
..|++.|..||||||++..|....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 568999999999999999986554
No 478
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.94 E-value=0.21 Score=52.55 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 4689999999999999998743
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.88 E-value=0.33 Score=51.34 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=19.0
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||+..|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998854
No 480
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.79 E-value=0.36 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..+|+|+.|+|||||+++|.+..|
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 678999999999999999876543
No 481
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.74 E-value=0.42 Score=46.01 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|+|++++|||||...|....+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4689999999999999999965443
No 482
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.65 E-value=0.077 Score=48.80 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=20.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.++|+|+.|||||||+++|.+...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 468999999999999999866543
No 483
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=85.56 E-value=0.49 Score=46.39 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=22.2
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHhc
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
...+|+++|.+|+|||||...|....+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 446899999999999999998865443
No 484
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.50 E-value=0.42 Score=42.83 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
..|+|+|++++|||||.-.|..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999988843
No 485
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.34 E-value=0.26 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=19.3
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.++++|+.|||||||++.|..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999998743
No 486
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=85.31 E-value=0.46 Score=41.58 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.2
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.-|.|.|++|+|||||.-.|+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999988854
No 487
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.19 E-value=2.1 Score=41.84 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.4
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
..+.|.|++|+|||||+-+++
T Consensus 62 ~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998874
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.89 E-value=0.39 Score=50.78 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.7
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++|+|+.|||||||+..|..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999998844
No 489
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.69 E-value=0.45 Score=46.31 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|+|++++|||||.-.|....+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4799999999999999999865543
No 490
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.48 E-value=0.54 Score=42.85 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.1
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
.++++|++|+|||||+-+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999877743
No 491
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.42 E-value=0.33 Score=50.70 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHHh
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~~ 106 (475)
+-..|+++|..|||||||+..|....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 34579999999999999999986544
No 492
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.19 E-value=0.6 Score=44.85 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=21.2
Q ss_pred eeEEEEecCCCCchhHHHHHHHHhc
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
..|+|+|+++||||||...|....+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 4689999999999999999965543
No 493
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=84.05 E-value=4 Score=36.92 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=15.9
Q ss_pred eeEEEEecCCCCchh-HHHHH
Q 011910 83 LNVVFIGHVDAGKST-TGGQI 102 (475)
Q Consensus 83 ~~v~ivG~~~sGKST-L~~~L 102 (475)
....+.|+.++|||| |+.++
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~ 49 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRL 49 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999 66654
No 494
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=84.05 E-value=0.78 Score=35.21 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=41.2
Q ss_pred EEeeEecCCeEE-ecCCC--CeEEEEEEEE-CCccceee-CCCCEEEEEeccCCccCCCceeEE
Q 011910 332 ESGSVREGDSLL-VMPNK--AQVKVLAIYC-DDNRVRHA-GPGENLRIRLSGIEEEDILSGFVL 390 (475)
Q Consensus 332 ~~G~l~~gd~v~-i~p~~--~~~~V~si~~-~~~~v~~a-~aG~~v~i~l~~~~~~~i~~G~vl 390 (475)
....+.+||.|. +.|.+ ...+|..|.. .+++++.| .+|+.|.|.+. ..+..|++|
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dil 85 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVK----RPLFPYNMM 85 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECS----SCCCTTCEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEE
Confidence 578899999998 45665 3466778874 47789998 99999998765 235667665
No 495
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.01 E-value=0.52 Score=46.15 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=19.8
Q ss_pred eeEEEEecCCCCchhHHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..+.|+|++|+|||||+..|...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988543
No 496
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=83.98 E-value=0.49 Score=46.07 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=18.8
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 011910 84 NVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
..+|+|+.|+|||||++++.+.
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999998543
No 497
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.98 E-value=0.4 Score=55.52 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.4
Q ss_pred eeEEEEecCCCCchhHHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQILF 104 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll~ 104 (475)
-.|+|||+.|||||||+..|+.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3699999999999999998843
No 498
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=83.90 E-value=0.22 Score=49.89 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHhc
Q 011910 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (475)
Q Consensus 84 ~v~ivG~~~sGKSTL~~~Ll~~~g 107 (475)
.++|+|+.|||||||+++|....+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999866554
No 499
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.66 E-value=2.9 Score=40.88 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=18.5
Q ss_pred eeEEEEecCCCCchhHHHHHH
Q 011910 83 LNVVFIGHVDAGKSTTGGQIL 103 (475)
Q Consensus 83 ~~v~ivG~~~sGKSTL~~~Ll 103 (475)
..+.|.|.+++|||||+-+|+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998874
No 500
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.62 E-value=0.55 Score=46.60 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCCchhHHHHHHHH
Q 011910 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (475)
Q Consensus 81 ~~~~v~ivG~~~sGKSTL~~~Ll~~ 105 (475)
...+++|+|.+|+|||||+..|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998654
Done!