Your job contains 1 sequence.
>011912
MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA
ERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES
DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR
AVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRS
GFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSNRYSSPGSYGAGN
GGNSSVLSSPSRNLWGNGNLNYALNTANSNAFLGSGGGTSGMGSLGSLGALWDSSPDPGH
GGGAGAGYSSGNLSYGNGDLVVGSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF
YGDSTWRPSSSELEGSGSFGFGVGPTASDVMTKNSAGYVGGYSVTDRQANRGIAA
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011912
(475 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 1170 2.1e-128 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 849 5.4e-94 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 837 4.3e-92 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 617 1.3e-63 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 625 4.3e-61 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 512 4.1e-49 1
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 465 2.6e-47 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 492 5.4e-47 1
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 492 5.4e-47 1
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 492 5.4e-47 1
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 489 1.1e-46 1
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 489 1.1e-46 1
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 489 1.1e-46 1
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 489 1.1e-46 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 486 2.3e-46 1
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 456 2.0e-45 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 476 2.7e-45 1
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 448 1.1e-44 2
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 442 1.1e-44 2
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 442 1.1e-44 2
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 440 1.8e-44 2
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 440 1.8e-44 2
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 440 1.8e-44 2
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 466 3.1e-44 1
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 434 7.6e-44 2
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 462 8.1e-44 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 457 2.8e-43 1
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 456 3.5e-43 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 455 4.5e-43 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 455 4.5e-43 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 455 4.5e-43 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 454 5.7e-43 1
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 450 1.5e-42 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 450 1.5e-42 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 446 4.0e-42 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 434 7.5e-41 1
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 402 2.8e-40 2
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 394 1.5e-39 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 421 1.8e-39 1
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 395 2.5e-39 2
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 394 3.2e-39 2
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 394 3.2e-39 2
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 394 3.2e-39 2
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 394 3.2e-39 2
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 393 4.0e-39 2
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 387 6.5e-39 2
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 390 8.3e-39 2
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 413 1.3e-38 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 413 1.3e-38 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 413 1.3e-38 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 413 1.3e-38 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 413 1.3e-38 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 413 1.3e-38 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 413 1.3e-38 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 413 1.3e-38 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 413 1.3e-38 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 413 1.3e-38 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 413 1.3e-38 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 391 1.3e-38 2
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 388 1.3e-38 2
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 412 1.6e-38 1
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 383 1.7e-38 2
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 411 2.1e-38 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 411 2.1e-38 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 408 4.3e-38 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 407 5.5e-38 1
ZFIN|ZDB-GENE-030912-14 - symbol:hnrnpa1 "heterogeneous n... 403 1.5e-37 1
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 403 1.5e-37 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 401 2.4e-37 1
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 400 3.0e-37 1
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 400 3.0e-37 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 400 3.0e-37 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 376 3.1e-37 2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 399 3.9e-37 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 398 4.9e-37 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 398 4.9e-37 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 398 4.9e-37 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 401 6.4e-37 1
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 396 8.0e-37 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 396 8.0e-37 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 395 1.0e-36 1
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 395 1.0e-36 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 395 1.0e-36 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 394 1.3e-36 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 393 1.7e-36 1
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 393 1.7e-36 1
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 392 2.1e-36 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 392 2.1e-36 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 391 2.7e-36 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 390 3.5e-36 1
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 389 4.4e-36 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 386 9.2e-36 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 386 9.2e-36 1
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 386 9.2e-36 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 386 9.2e-36 1
MGI|MGI:1924384 - symbol:Hnrnpa0 "heterogeneous nuclear r... 361 1.2e-35 2
UNIPROTKB|F1M117 - symbol:F1M117 "Uncharacterized protein... 345 1.9e-35 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 382 2.4e-35 1
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein... 381 3.1e-35 1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 379 5.1e-35 1
WARNING: Descriptions of 1067 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 1170 (416.9 bits), Expect = 2.1e-128, Sum P(2) = 2.1e-128
Identities = 226/336 (67%), Positives = 265/336 (78%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
M+ + GKLFIGGISWDTNE+RL++YF +FGEV+EAVI+KDR TGRARGFGF+VFADPAVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 ERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSS-IHGSPG-PARTKKIFVGGLASTVT 118
E V+ +KH IDGR VEAKKAVPRDDQN+ NR+NSS I GSPG P RT+KIFVGGL S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
ESDFK YF+QFG TDVVVMYDHNTQRPRGFGFITYDSEEAV+KVLLKTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 179 KRAVPKELSPGPSRNQLGT-HNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTI 237
KRAVPKELSPGPSR+ LG ++YG++RV++ LNGY Q +NP++VGGYGLR+DGR+ PV
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSNRXX-XXXXX 296
GRSGF GYGM +NF+ L GG N + N+ YGRG++P + GN+NR
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300
Query: 297 XXXXXXXXXVLSSPSRNLWGN-GNLNYALNTANSNA 331
SS +RNLWGN G LNY N NSN+
Sbjct: 301 GGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNS 336
Score = 156 (60.0 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 75/297 (25%), Positives = 118/297 (39%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GG+ E + YF+ FG + V+M D T R RGFGFI + E+V+++
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 67 K-HMIDGRTVEAKKAVPRD--------------DQNIQNRNNSSIHG-----SPGPARTK 106
H ++G+ VE K+AVP++ + NR N+ ++G +P
Sbjct: 169 TFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGV-NRVNNLLNGYAQGFNPAAVGGY 227
Query: 107 KIFVGGLASTVT--ESDFKKYFDQFGIITDVVVMYDHNTQRPRGF-GFITYDSEEAVDKV 163
+ + G S V S F Y +G+ V +D P GF G Y+ +
Sbjct: 228 GLRMDGRFSPVGAGRSGFANYSSGYGMN----VNFDQGL--PTGFTGGTNYNGNVDYGRG 281
Query: 164 LLKTFHELNGKMVEVKRAVPKELSPGPSRNQLG---THN-YGLSRVSSFLNGYTQSYNPS 219
+ + G AV E G + T N +G + ++ N T S + +
Sbjct: 282 MSPYYI---GNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNT 338
Query: 220 SVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYG 276
+GG + GP G SG PG G N+ +GG L G
Sbjct: 339 YMGGSSSGNNTLSGP--FGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTG 393
Score = 111 (44.1 bits), Expect = 2.1e-128, Sum P(2) = 2.1e-128
Identities = 31/84 (36%), Positives = 41/84 (48%)
Query: 395 TSVPPVSSTKGS-YDVA-YGDIYESGSFYGDSTWR---PXXXXXXXXXXXXXXXXPTASD 449
+S S+T + YD A + Y +G+ Y D TWR P P+ SD
Sbjct: 409 SSFSSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPS-SD 467
Query: 450 VMTKNSA-GYVGGYSVTDRQANRG 472
V ++S+ GYVG YSV RQ NRG
Sbjct: 468 VSARSSSPGYVGSYSVNKRQPNRG 491
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 849 (303.9 bits), Expect = 5.4e-94, Sum P(2) = 5.4e-94
Identities = 194/346 (56%), Positives = 232/346 (67%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
ME +LGKLFIGGISWDT+E+RLRDYF +G+V+EAVIM+DRATGRARGFGFIVFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 ERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIH-GSP---GPARTKKIFVGGLAST 116
ERV+M KH+IDGRTVEAKKAVPRDDQ + R+ S IH SP G RTKKIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+TE +FK YFDQFG I DVVVMYDHNTQRPRGFGFIT+DS++AVD+VL KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 177 EVKRAVPKELSPGPS-RNQLGTH-NYGLSRVSSFLNGYTQSYNPSSVGGYGLR--IDGRY 232
EVKRAVPKE+SP + R+ L + NYG N Y ++ P G Y + R+
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGP-GFYNSLGPVGRRF 239
Query: 233 GPVTIGRSGFTTIGPGYGMGLNFEP--NLSPSHGGGANLSPNLSYGR-GLNPSFGGNS-N 288
PV IG SG + +G+GLN + NL+PS G S Y R NP F G S N
Sbjct: 240 SPV-IG-SGRNAVS-AFGLGLNHDLSLNLNPSCDG---TSSTFGYNRIPSNPYFNGASPN 293
Query: 289 RXXXXXXXXXXXXXXXXVLSSPSRNLWGN----GNLNYALNTANSN 330
R +S +R+LWGN + LN +N N
Sbjct: 294 RYTSPIGHNRTESPY----NSNNRDLWGNRTDTAGPGWNLNVSNGN 335
Score = 106 (42.4 bits), Expect = 5.4e-94, Sum P(2) = 5.4e-94
Identities = 29/92 (31%), Positives = 39/92 (42%)
Query: 388 GYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSFYGDSTWR----PXXXXXXXXXXXXXXX 443
G+GRN TS SS ++ + G++Y GS Y DSTW+ P
Sbjct: 354 GFGRNYGTSSGLSSSPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYG 413
Query: 444 XP---TASDVMTKNSAGYVGGYSVTDRQANRG 472
SD + Y G Y+V +RQ NRG
Sbjct: 414 YDIDNVGSDPSANDPETYNGSYNVGNRQTNRG 445
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 837 (299.7 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
Identities = 187/332 (56%), Positives = 231/332 (69%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+LGKLFIGGISWDT+E+RL++YF +G+++EAVIM+DR TGRARGFGFIVFADP+VAERV
Sbjct: 13 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIH-------GSPGPARTKKIFVGGLAST 116
+M KH+IDGRTVEAKKAVPRDDQ + R+ S +H G+ G ARTKKIFVGGL S+
Sbjct: 73 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132
Query: 117 VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+TE++FK YFDQFG I DVVVMYDHNTQRPRGFGFIT+DSEE+VD VL KTFHELNGKMV
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192
Query: 177 EVKRAVPKELSPG-PSRNQL-GT-HNYGL----SRVSSFLNGYTQSYNPSSVGGYGLRID 229
EVKRAVPKELS P+R+ L G +NYG+ S +S+ N + YN +++G G
Sbjct: 193 EVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSAG---- 248
Query: 230 GRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGR--GLNPSFGGNS 287
R+ P+ GR+ F++ +G+GLN E NL+ + G L Y R G N F S
Sbjct: 249 -RFSPIGSGRNAFSS----FGLGLNQELNLNSNFDGNT-----LGYSRIPG-NQYFNSAS 297
Query: 288 -NRXXXXXXXXXXXXXXXXVLSSPS-RNLWGN 317
NR +PS R+LWGN
Sbjct: 298 PNRYNSPIGYNRGDSAY-----NPSNRDLWGN 324
Score = 100 (40.3 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
Identities = 30/100 (30%), Positives = 43/100 (43%)
Query: 388 GYGRN-----SMTSVPPVSSTKGSYDVAYGDIYESGSFYGDSTWR---PXXXXXXXXXXX 439
GYGR+ ++ + +T G +D + G++Y S Y DSTW+ P
Sbjct: 357 GYGRSYGAGSGLSGLSFAGNTNG-FDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGL 415
Query: 440 XXXXX----PTASDVMTKNSAGYVGGYSVTDRQANRGIAA 475
SD S GY G Y+V +RQ +RGI A
Sbjct: 416 SRSYGFGIDNVGSDPSANASEGYSGNYNVGNRQTHRGIEA 455
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 617 (222.3 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 134/298 (44%), Positives = 192/298 (64%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
M+ + GKLF+GGISW+T+ED+LR++F +GEV +A++M+D+ TGR RGFGF++F+DP+V
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 ERVVMQKHMIDGRTVEAKKAVPRDDQNIQNR--NNSSIHGSPGPA--RTKKIFVGGLAST 116
+RV+ +KH ID R V+ K+A+ R++Q + R N ++ S G A +TKKIFVGGL T
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 117 VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+T+ +F++YF+ +G +TDV +MYD T RPRGFGF+++DSE+AVD VL KTFH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 177 EVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSY--NPSSVGGYGLRIDG-RY- 232
EVKRA+PK+ +PG +G G GY Q Y N SS G R+D R+
Sbjct: 181 EVKRALPKDANPGGGGRSMGGGGSG---------GY-QGYGGNESSYDG---RMDSNRFL 227
Query: 233 GPVTIGRSGFTTIGP-GYGMGLNFEPNLSPSHG--GGANLSPNLSYGRGLNPSFGGNS 287
++G +G + G GYG G N +G GG S YG G +G +
Sbjct: 228 QHQSVG-NGLPSYGSSGYGAGYGNGSN-GAGYGAYGGYTGSAG-GYGAGATAGYGATN 282
Score = 50 (22.7 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKG--SYDVAYGDIYESGSFYGD 423
GSGA G + PP S G + YG S S YG+
Sbjct: 314 GSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYGGYSGSDSGYGN 356
Score = 44 (20.5 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 383 GSGAVGYGRNSMTSVPPVS-STKGSYDVAYGDIYESGSFYGDSTWR 427
GS + GYG + V S GS + G Y G YGD +WR
Sbjct: 349 GSDS-GYGNQAAYGVVGGRPSGGGSNNPGSGG-YMGGG-YGDGSWR 391
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 140/294 (47%), Positives = 186/294 (63%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
ME + GKLFIGGISWDT+E+ LR+YF FGEVL+ +M+++ATGR RGFGF+ F+DPAV
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 61 ERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRN---NSSIHGSPGP-ARTKKIFVGGLAST 116
+RV+ KH ID R V+ K+A+ R++Q+ R+ N+S + G RTKKIFVGGL
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 117 VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+T +F+ YF+ +G ++D V+M D TQRPRGFGF+++DSE++VD VL KTFH+LNGK V
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 177 EVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG-RY-GP 234
EVKRA+PK+ +PG + G R S G+ Y S GY R+D RY P
Sbjct: 181 EVKRALPKDANPGIAS--------GGGRGSGGAGGFP-GYGGSGGSGYEGRVDSNRYMQP 231
Query: 235 VTIGRSGFTTIG-PGYGMGLNFEPNLSPSHGG-GANLSP-NLSYGRGLNPSFGG 285
G SG+ G GYG G + N +GG G +P YG NPS G
Sbjct: 232 QNTG-SGYPPYGGSGYGTGYGYGSN-GVGYGGFGGYGNPAGAPYG---NPSVPG 280
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 115/294 (39%), Positives = 169/294 (57%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E+GKLF+GG+ W T ++ LR+YF +GEV++ VIMKD++T ++RGFGF+ F DP V
Sbjct: 9 EIGKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTV 68
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPA-RTKKIFVGGLASTVTESD 121
+ K H +DGR ++ K PR Q + R GS + ++KKIFVGG+ E++
Sbjct: 69 LDTKPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSNKSKKIFVGGIPHNCGEAE 128
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF++FG++T+VV++YD QRPRGFGFIT+++E++VD+ + FH++ GK VEVK+A
Sbjct: 129 LRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKA 188
Query: 182 VPKELSPGPSRNQLGTHNYGLSRVSSFLNGYT--------QSYNPSSVG-GYGLRIDGRY 232
P++ S P+ QLG + +G + S NG+ QSY P V G + G Y
Sbjct: 189 EPRD-SKAPAPGQLGANQWGPRAIISAANGWAAQPAPTWQQSYGPQGVWVSTGQPLAG-Y 246
Query: 233 GP-VTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLS-PNLSYGRGLNPSFG 284
GP + GR + L P P+ G GA P G P FG
Sbjct: 247 GPPLPAGRGAPAQAPSPFNAFLVAAP---PTGGFGAPQGYPQ--QGFSTQPQFG 295
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 465 (168.7 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 99/250 (39%), Positives = 145/250 (58%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIH-GSPGPA-RTKKIFVGGLASTVTESDFK 123
+ H +DGR ++ K PR Q + R GS ++ KIFVGG+ E++ +
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELR 120
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKRA P
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 180
Query: 184 ---KELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRS 240
K +PGP G +G + S NG+ P+ GYG + G + P
Sbjct: 181 RDSKSQTPGPP----GASQWGSRIMPSAANGWAGQPPPTWQQGYGPQ--GMWVPAGQAIG 234
Query: 241 GFTTIGPGYG 250
G+ PG G
Sbjct: 235 GYGPPPPGRG 244
Score = 257 (95.5 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 59/150 (39%), Positives = 86/150 (57%)
Query: 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
++ KIFVGG+ E++ ++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 101 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 160
Query: 164 LLKTFHELNGKMVEVKRAVP---KELSPGPSRNQLGTHNYGLSRVSSFLNGYT------- 213
+ FH++ GK VEVKRA P K +PGP G +G + S NG+
Sbjct: 161 VNMHFHDIMGKKVEVKRAEPRDSKSQTPGPP----GASQWGSRIMPSAANGWAGQPPPTW 216
Query: 214 -QSYNPS--------SVGGYGLRIDGRYGP 234
Q Y P ++GGYG GR P
Sbjct: 217 QQGYGPQGMWVPAGQAIGGYGPPPPGRGAP 246
Score = 47 (21.6 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 248 GYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G+G G + +P+ P GG ++ P+ G FG N
Sbjct: 349 GFGQGFS-DPSQQPPPYGGPSVQPSSGPPAG-GSGFGRGQN 387
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 111/292 (38%), Positives = 162/292 (55%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPA-RTKKIFVGGLASTVTESD 121
+ + H +DGR ++ K PR Q + R G + ++ KIFVGG+ E++
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCGETE 127
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKRA
Sbjct: 128 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 187
Query: 182 VPKELSPGPSRNQLGTHNYGLSRVS-SFLNGYTQSYNPSSVGGYGLR--------IDGRY 232
P++ S + Q G +G SRV+ S NG+ P+ GYG + G Y
Sbjct: 188 EPRD-SKNQAPGQPGASQWG-SRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGY 245
Query: 233 GPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGG---GANLSPNLSYGRGLNP 281
GP GR P ++ P P G G P S+G G P
Sbjct: 246 GPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPP 297
Score = 172 (65.6 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 34/98 (34%), Positives = 52/98 (53%)
Query: 99 SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
S G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 3 SAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 159 AVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLG 196
V VL H L+G+ ++ K P+ + P +R + G
Sbjct: 63 CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEG 100
Score = 49 (22.3 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGG----GANLSP--NLSYGRGLNPSFGG 285
G+ G+ G+G G + PS+GG G+ P +GRG N + G
Sbjct: 346 GQYGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQG 399
Score = 48 (22.0 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 196 GTHNYGLSRVSSFLNGYTQ-SYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLN 254
G + YG +S F G++ S P S GG + G GP +G G G+G G N
Sbjct: 346 GQYGYGQD-LSGFGQGFSDPSQQPPSYGGPS--VPGSGGPP----AG----GSGFGRGQN 394
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 111/293 (37%), Positives = 162/293 (55%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSP--GPARTKKIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q + R P +++ KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+ ++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKELSPGPSRNQLGTHNYGLSRVS-SFLNGYTQSYNPSSVGGYGLR--------IDGR 231
A P++ S + Q G +G SRV+ S NG+ P+ GYG + G
Sbjct: 188 AEPRD-SKNQAPGQPGASQWG-SRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGG 245
Query: 232 YGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGG---GANLSPNLSYGRGLNP 281
YGP GR P ++ P P G G P S+G G P
Sbjct: 246 YGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPP 298
Score = 173 (66.0 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 45/139 (32%), Positives = 66/139 (47%)
Query: 99 SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
S G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 3 SAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 159 AVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNP 218
V VL H L+G+ ++ K P+ + P +R + G G SS N P
Sbjct: 63 CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQK-GPRSDSSKSNKIFVGGIP 121
Query: 219 SSVGGYGLR-IDGRYGPVT 236
+ G LR ++G VT
Sbjct: 122 HNCGETELREYFKKFGVVT 140
Score = 49 (22.3 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGG----GANLSP--NLSYGRGLNPSFGG 285
G+ G+ G+G G + PS+GG G+ P +GRG N + G
Sbjct: 347 GQYGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQG 400
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 111/293 (37%), Positives = 162/293 (55%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSP--GPARTKKIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q + R P +++ KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+ ++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKELSPGPSRNQLGTHNYGLSRVS-SFLNGYTQSYNPSSVGGYGLR--------IDGR 231
A P++ S + Q G +G SRV+ S NG+ P+ GYG + G
Sbjct: 188 AEPRD-SKNQAPGQPGASQWG-SRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGG 245
Query: 232 YGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGG---GANLSPNLSYGRGLNP 281
YGP GR P ++ P P G G P S+G G P
Sbjct: 246 YGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPP 298
Score = 173 (66.0 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 45/139 (32%), Positives = 66/139 (47%)
Query: 99 SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
S G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 3 SAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 159 AVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNP 218
V VL H L+G+ ++ K P+ + P +R + G G SS N P
Sbjct: 63 CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQK-GPRSDSSKSNKIFVGGIP 121
Query: 219 SSVGGYGLR-IDGRYGPVT 236
+ G LR ++G VT
Sbjct: 122 HNCGETELREYFKKFGVVT 140
Score = 49 (22.3 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGG----GANLSP--NLSYGRGLNPSFGG 285
G+ G+ G+G G + PS+GG G+ P +GRG N + G
Sbjct: 347 GQYGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQG 400
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 110/287 (38%), Positives = 158/287 (55%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GKLF+GG+SW+T + +YF FGEV+++VIM DR TG RGFGF+ FAD AVAE+V+
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Query: 66 QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+ H+ID R V+ K+ +PR D++ + S +T+KIFVGGL + E + K Y
Sbjct: 126 EDHVIDDRKVDLKRTLPRGDKDTDIKAVS---------KTRKIFVGGLPPLLEEDELKNY 176
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK-TFHELNGKMVEVKRAVPK 184
F +G I + +MYDH+T R RGFGF+T+ +E++VD++ HEL K VE+KRA PK
Sbjct: 177 FCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Query: 185 ELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNP-SSVGGYGLRIDGRY-GPVTIGRSGF 242
S G + S+ + Y+ S GGYG G Y G + +GF
Sbjct: 237 RTGRDNSFRSYGASGK-YDQEDSYSGKANEDYSMYSGYGGYGGY--GAYAGNSMVNPAGF 293
Query: 243 TTIGPGYGMGLNFEPNL-SPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G GYG G + + + +G G YG ++GG +
Sbjct: 294 YGYGGGYGYGYGYGGQMFNMGYGAGGYSHMGSGYGVAAAAAYGGGKS 340
Score = 180 (68.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 37/98 (37%), Positives = 62/98 (63%)
Query: 87 NIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRP 146
++ +R++SS SPG K+FVGG++ T F YF +FG + D V+M D T P
Sbjct: 52 SVDHRHSSSSMSSPG-----KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNP 106
Query: 147 RGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
RGFGF+T+ ++ AV + +L+ H ++ + V++KR +P+
Sbjct: 107 RGFGFVTF-ADSAVAEKVLEEDHVIDDRKVDLKRTLPR 143
Score = 77 (32.2 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 26/87 (29%), Positives = 35/87 (40%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G YG +S +N Y GYG G+ + G G++ +G GYG+
Sbjct: 275 GYGGYGAYAGNSMVNP-AGFYGYGGGYGYGYGYGGQMFNMGYGAGGYSHMGSGYGVAAAA 333
Query: 256 EPNLSPSHGGGANLSPNLSYGRGLNPS 282
SHG G N S + G G N S
Sbjct: 334 AYGGGKSHGNGNNGSSS-GKGNGTNGS 359
Score = 39 (18.8 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 383 GSGAVG-YGRNSMTSVPPVSSTKGSYDVAYG 412
G G G Y NSM + G Y YG
Sbjct: 275 GYGGYGAYAGNSMVNPAGFYGYGGGYGYGYG 305
Score = 38 (18.4 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 406 SYDVAYGDIYESGSFYGDSTWR 427
+Y YGDI E Y T R
Sbjct: 175 NYFCVYGDIIEHQIMYDHHTGR 196
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 109/292 (37%), Positives = 158/292 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q + R P +K KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+ ++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLR--------IDGRY 232
A P++ S + Q G +G V + NG+ P+ GYG + G Y
Sbjct: 188 AEPRD-SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGY 246
Query: 233 GPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGG---GANLSPNLSYGRGLNP 281
GP GR P ++ P P G G P S+G G P
Sbjct: 247 GPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPP 298
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 109/292 (37%), Positives = 158/292 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q + R P +K KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+ ++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLR--------IDGRY 232
A P++ S + Q G +G V + NG+ P+ GYG + G Y
Sbjct: 188 AEPRD-SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGY 246
Query: 233 GPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGG---GANLSPNLSYGRGLNP 281
GP GR P ++ P P G G P S+G G P
Sbjct: 247 GPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPP 298
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 109/292 (37%), Positives = 158/292 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q + R P +K KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+ ++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLR--------IDGRY 232
A P++ S + Q G +G V + NG+ P+ GYG + G Y
Sbjct: 188 AEPRD-SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGY 246
Query: 233 GPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGG---GANLSPNLSYGRGLNP 281
GP GR P ++ P P G G P S+G G P
Sbjct: 247 GPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPP 298
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 104/253 (41%), Positives = 154/253 (60%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGS-PGP--ARTKKIFVGGLASTVTE 119
+ + H +DGR ++ K PR Q ++R P +R+ KIFVGG+ E
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGE 127
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
++ K+YF++FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVK
Sbjct: 128 TELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 187
Query: 180 RAVP---KELSPGPSRNQLGTHNYGLSRVSSFLNGYT-------QSYNPS--------SV 221
RA P K +PGP G++ +G + S NG+T Q Y+P ++
Sbjct: 188 RAEPRDSKSQTPGPP----GSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQTI 243
Query: 222 GGYGLRIDGRYGP 234
GGYG + GR GP
Sbjct: 244 GGYG-QPAGRGGP 255
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 456 (165.6 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 102/243 (41%), Positives = 147/243 (60%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
M+ + KLF+GGI+ +T+E+ L+ YF +G VLEAV+ K++ TG+ RGFGF+ FA+
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 61 ERVVMQKHMIDGRTVEAKKAVPRDD------------QNIQNRNNSSIH-GSPG-PARTK 106
+ + H I G+ V+ +KA+ + + + +Q N S G +RTK
Sbjct: 61 VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
KIFVGGL+S TE +FK YF++FG TDVVVM+D T RPRGFGF+TYDSE++V+ V+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 167 TFHELNGKMVEVKRAVPKELSPGPSRNQLGTH-NYGLSRVSSFL---NGYTQSYN-PSSV 221
FHEL+ K VEVKRA+PKE + N + +Y + + ++ NGY P V
Sbjct: 181 NFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQATPYVPEQNGYGMVLQFPPPV 240
Query: 222 GGY 224
GY
Sbjct: 241 FGY 243
Score = 38 (18.4 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 248 GYGMGLNFEPNLSPSH 263
GYGM L F P + H
Sbjct: 229 GYGMVLQFPPPVFGYH 244
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 107/289 (37%), Positives = 155/289 (53%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFK 123
+ H +DGR ++ K PR Q + R P +K KIFVGG+ E++ +
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 120
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKRA P
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 180
Query: 184 KELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLR--------IDGRYGPV 235
++ S + Q G +G V + NG+ P+ GYG + G YGP
Sbjct: 181 RD-SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPP 239
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGG---GANLSPNLSYGRGLNP 281
GR P ++ P P G G P S+G G P
Sbjct: 240 PAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPP 288
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 448 (162.8 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 113/297 (38%), Positives = 161/297 (54%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GK+F+GG++ +T +F +GE+ ++VIMKDR TG+ RGFGF+ +AD +V ++V+
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 66 QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
H+I G+ VE K+ +PR S +TKKIFVGG+ S+V + +FK++
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSM------------SSNDFKTKKIFVGGIPSSVDDDEFKEF 149
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH-ELNGKMVEVKRAVPK 184
F QFG + + +M DH+T R RGFGF+TY+SE+ VD +L K EL+G VE+K+A PK
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Query: 185 ELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG-----LRIDGRYGPVTIGR 239
+ P+ + +G SR S+F GY Y GGYG + G YG G
Sbjct: 210 K----PNSVTTPSKRFGDSR-SNFGGGYGDGYGGGHGGGYGGPGGPYKSGGGYGGGRSGG 264
Query: 240 SG-----FTTIGPG-YGMGLN---FEPNLSPS--HGGGANLSPNLSYGRGLNPSFGG 285
G F G G YG G+ EP L S +GGG Y G +GG
Sbjct: 265 YGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYGG 321
Score = 223 (83.6 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 45/104 (43%), Positives = 65/104 (62%)
Query: 82 PRDDQNIQNRNNSSI-HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD 140
P+ ++I++ ++ S H G KIFVGGLA T ++F K+F ++G ITD V+M D
Sbjct: 17 PKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKD 76
Query: 141 HNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
T +PRGFGF+TY VDKV+ H + GK VE+KR +P+
Sbjct: 77 RKTGQPRGFGFVTYADSSVVDKVIQDN-HIIIGKQVEIKRTIPR 119
Score = 69 (29.3 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 28/100 (28%), Positives = 36/100 (36%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSG-FTTIGP 247
GP YG R + GY + GGYG + G +G SG + G
Sbjct: 246 GPGGPYKSGGGYGGGRSGGY-GGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGG 304
Query: 248 GYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNS 287
GY G + +GGG SYG +GG S
Sbjct: 305 GYNRG-GYSMGGGGGYGGGPGDMYGGSYGEP-GGGYGGPS 342
Score = 62 (26.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 22/77 (28%), Positives = 29/77 (37%)
Query: 212 YTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSP 271
Y Y S +GGYG + G G G G+ G G G + GGG N
Sbjct: 345 YGGGYGSSGIGGYGGGMGGAGGGGYRGGGGYDMGGVGGGGAGGY------GAGGGGNGGG 398
Query: 272 NLSYGRGLNPSFGGNSN 288
+ G G +GG +
Sbjct: 399 SFYGGGGGRGGYGGGGS 415
Score = 61 (26.5 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 24/66 (36%), Positives = 30/66 (45%)
Query: 222 GGYGLRIDGRYG--PVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGL 279
GGY + G YG P + + G GYG G P S S+GGG S YG G+
Sbjct: 309 GGYSMGGGGGYGGGPGDMYGGSYGEPGGGYG-G----P--SGSYGGGYGSSGIGGYGGGM 361
Query: 280 NPSFGG 285
+ GG
Sbjct: 362 GGAGGG 367
Score = 39 (18.8 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSFYGD 423
G G GY R + G Y GD+Y G YG+
Sbjct: 300 GGGGGGYNRGGYSM-----GGGGGYGGGPGDMY--GGSYGE 333
Score = 38 (18.4 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 222 GGYGLRIDGRYGP 234
GGYG GRY P
Sbjct: 408 GGYGGGGSGRYHP 420
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 442 (160.7 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 92/199 (46%), Positives = 128/199 (64%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T ++ LR+YF FGEV E ++M+D T R+RGFGF+ F D A ++V+ Q
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 67 -KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q RTKKIFVGGL+ T D K+Y
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKQY 108
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE
Sbjct: 109 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 168
Query: 186 -LSP-GPSRNQLGTHNYGL 202
+SP G +R + YG+
Sbjct: 169 VMSPTGSARGRSRVMPYGM 187
Score = 45 (20.9 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP G N S VSS+++ + + PS+ G+G + G
Sbjct: 292 SPGPMAELYGAANQD-SGVSSYISAASPA--PST--GFGHSLGG 330
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 442 (160.7 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 92/199 (46%), Positives = 128/199 (64%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T ++ LR+YF FGEV E ++M+D T R+RGFGF+ F D A ++V+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 67 -KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q RTKKIFVGGL+ T D K+Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKQY 128
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -LSP-GPSRNQLGTHNYGL 202
+SP G +R + YG+
Sbjct: 189 VMSPTGSARGRSRVMPYGM 207
Score = 45 (20.9 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP G N S VSS+++ + + PS+ G+G + G
Sbjct: 312 SPGPMAELYGAANQD-SGVSSYISAASPA--PST--GFGHSLGG 350
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 440 (159.9 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 92/199 (46%), Positives = 127/199 (63%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T ++ LR+YF FGEV E ++M+D T R+RGFGF+ F D A ++V+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 67 -KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q RTKKIFVGGL+ T D K Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -LSP-GPSRNQLGTHNYGL 202
+SP G +R + YG+
Sbjct: 189 VMSPTGSARGRSRVMPYGM 207
Score = 45 (20.9 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP G N S VSS+++ + + PS+ G+G + G
Sbjct: 312 SPGPMAELYGAANQD-SGVSSYISAASPA--PST--GFGHSLGG 350
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 440 (159.9 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 92/199 (46%), Positives = 127/199 (63%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T ++ LR+YF FGEV E ++M+D T R+RGFGF+ F D A ++V+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 67 -KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q RTKKIFVGGL+ T D K Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -LSP-GPSRNQLGTHNYGL 202
+SP G +R + YG+
Sbjct: 189 VMSPTGSARGRSRVMPYGM 207
Score = 45 (20.9 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP G N S VSS+++ + + PS+ G+G + G
Sbjct: 312 SPGPMAELYGAANQD-SGVSSYISAASPA--PST--GFGHSLGG 350
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 440 (159.9 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 92/199 (46%), Positives = 127/199 (63%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T ++ LR+YF FGEV E ++M+D T R+RGFGF+ F D A ++V+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 67 -KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q RTKKIFVGGL+ T D K Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -LSP-GPSRNQLGTHNYGL 202
+SP G +R + YG+
Sbjct: 189 VMSPTGSARGRSRVMPYGM 207
Score = 45 (20.9 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP G N S VSS+++ + + PS+ G+G + G
Sbjct: 312 SPGPMAELYGAANQD-SGVSSYISAASPA--PST--GFGHSLGG 350
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 112/279 (40%), Positives = 155/279 (55%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GK+FIGG+SW T+ D LRDYF FGE+ E ++M+D T R+RGFGF+ FADPA ++V+
Sbjct: 21 GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 80
Query: 66 QKHM-IDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGL-ASTVTESDFK 123
Q H +D +T++ K A PR Q RTKKIFVGGL A+TV E D K
Sbjct: 81 QPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVE-DVK 127
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV FHE+N KMVE K+A P
Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 187
Query: 184 KELS--PGPSRNQLGTH--------NYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
KE+ PG G G+ +F+ Y + Y P YG + G +
Sbjct: 188 KEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPG-FP 245
Query: 234 PVTIGRSGFTTIGPGYGMGLNF---EPNL-SPSHGGGAN 268
G + G LN +PN +P+ G+N
Sbjct: 246 AAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPASPAGSN 284
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 434 (157.8 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 91/199 (45%), Positives = 127/199 (63%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T ++ LR+YF FGEV E ++M+D T R+RGFGF+ F D A ++V+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 67 -KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q RTKKIFVGGL+ T D K+Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKQY 128
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+QF + D ++M+D T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE
Sbjct: 129 FEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -LSP-GPSRNQLGTHNYGL 202
+SP G +R + YG+
Sbjct: 189 VMSPTGSARGRSRVMPYGM 207
Score = 45 (20.9 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP G N S VSS+++ + + PS+ G+G + G
Sbjct: 312 SPGPMAELYGAANQD-SGVSSYISAASPA--PST--GFGHSLGG 350
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 107/246 (43%), Positives = 144/246 (58%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GK+FIGG+SW T+ D LRDYF FGE+ E ++M+D T R+RGFGF+ FADPA ++V+
Sbjct: 21 GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 80
Query: 66 QKHM-IDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGL-ASTVTESDFK 123
Q H +D +T++ K A PR Q RTKKIFVGGL A+TV E D K
Sbjct: 81 QPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVE-DVK 127
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV FHE+N KMVE K+A P
Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 187
Query: 184 KELS--PGPSRNQLGTH--------NYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG--- 230
KE+ PG G G+ +F+ Y + Y P YG + G
Sbjct: 188 KEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPGFPA 246
Query: 231 -RYGPV 235
YGPV
Sbjct: 247 AAYGPV 252
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 104/247 (42%), Positives = 146/247 (59%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GK+FIGG+SW T + LRDYF FGEV E ++M+D AT RARGFGFI F DP+ ++V+
Sbjct: 45 GKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLN 104
Query: 66 QK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
+ H +DG+ ++ K A P+ R + + +TKK+F+GGL++T T D K+
Sbjct: 105 NREHELDGKKIDPKVAFPK-------RTQAKL-----VTKTKKVFIGGLSATSTLEDMKQ 152
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+ +G + D ++M+D TQR RGFGF+T+DS+E DKV FHE+NGKMVE K+A PK
Sbjct: 153 YFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Query: 185 ELS-P---GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGL-RIDGRYGPVTIGR 239
E+ P SR + YG+ + L Y Q Y P G + + G
Sbjct: 213 EVMLPVQLNKSRAAAARNLYGMPPET--LLAYAQ-YLPRFGGNLMYPNFTNVFNNMPGGY 269
Query: 240 SGFTTIG 246
SG +T G
Sbjct: 270 SGLSTPG 276
Score = 196 (74.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 43/103 (41%), Positives = 58/103 (56%)
Query: 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH 141
P D N S GS G K+F+GGL+ T + + YF +FG + + +VM D
Sbjct: 21 PVDGHEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDP 80
Query: 142 NTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
T+R RGFGFIT+ +VDKVL HEL+GK ++ K A PK
Sbjct: 81 ATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK 123
Score = 38 (18.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 446 TASDVMTKNSAGYVGGYSVT 465
T + ++TK ++GG S T
Sbjct: 125 TQAKLVTKTKKVFIGGLSAT 144
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 105/246 (42%), Positives = 148/246 (60%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T ++ L+DYF FGEV E+++M+D T R+RGFGF+ F D A ++V+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 67 -KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR R + RTKKIFVGGL+ T D K+Y
Sbjct: 81 TRHELDSKTIDPKVAFPR-------RAQPKL-----VTRTKKIFVGGLSVNTTIEDVKQY 128
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
FDQFG + D ++M+D T R RGFGF+T+++E+ V+KV FHE+N KMVE K+A PKE
Sbjct: 129 FDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -LSP-GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFT 243
+SP G SR + YG+ +F+ G +G G G GRS +T
Sbjct: 189 VMSPTGSSRGRARVMPYGMD---AFMLG---------IGMLGY--PGFQATTYAGRS-YT 233
Query: 244 TIGPGY 249
++ PGY
Sbjct: 234 SLTPGY 239
Score = 196 (74.1 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 92 NNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGF 151
+ S++ S P K+F+GGL+ T+ K YF +FG + + +VM D T+R RGFGF
Sbjct: 6 SQSNLSSSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGF 65
Query: 152 ITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
+T+ + VDKVL +T HEL+ K ++ K A P+ P
Sbjct: 66 VTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQP 102
Score = 47 (21.6 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP + GT N S VSS+L+ + + PS+ G+ + G
Sbjct: 299 SPGPMADLYGTANQE-SAVSSYLSAASPA--PST--GFSHSLGG 337
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 110/277 (39%), Positives = 153/277 (55%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
+FIGG+SW T+ D LRDYF FGE+ E ++M+D T R+RGFGF+ FADPA ++V+ Q
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 68 HM-IDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGL-ASTVTESDFKKY 125
H +D +T++ K A PR Q RTKKIFVGGL A+TV E D K+Y
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVE-DVKQY 107
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T+++E+ V+KV FHE+N KMVE K+A PKE
Sbjct: 108 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 167
Query: 186 LS--PGPSRNQLGTH--------NYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPV 235
+ PG G G+ +F+ Y + Y P YG + G +
Sbjct: 168 VMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPG-FPAA 225
Query: 236 TIGRSGFTTIGPGYGMGLNF---EPNL-SPSHGGGAN 268
G + G LN +PN +P+ G+N
Sbjct: 226 AYGPVAAAAVAAARGSVLNSYSAQPNFGAPASPAGSN 262
Score = 172 (65.6 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 33/79 (41%), Positives = 54/79 (68%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-M 65
K+F+GG+S +T + ++ YF+ FG+V +A++M D+ T R RGFGF+ F + V E+V +
Sbjct: 89 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 148
Query: 66 QKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 149 HFHEINNKMVECKKAQPKE 167
Score = 41 (19.5 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 183 PKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
P SPGP + YG + S + Y + +P G+G I G
Sbjct: 270 PGANSPGPVADL-----YGPASQDSGVGNYISAASPQPGSGFGHGIAG 312
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 89/222 (40%), Positives = 136/222 (61%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E GK+FIGG++W+T +D LRDYF+ FGEVL+ +M+D TGR+RGFGF+ F +P V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123
+ ++H +DG+ ++ K+A+PR++Q +T K+FVGG+ TE +F+
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQE----------------KTAKMFVGGVPGDCTEEEFR 264
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+F+QFG + D +M D +T RPRGFGF+TY++E AV+ + + + ++GK VEVKRA P
Sbjct: 265 NFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 324
Query: 184 K-ELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGY 224
K L R+Q G H + +N Y P+ + Y
Sbjct: 325 KASLRDSHDRHQHGYHGNANPYYAQNMNMYG-GMTPAMMAQY 365
Score = 196 (74.1 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 39/96 (40%), Positives = 60/96 (62%)
Query: 90 NRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGF 149
N +N+ SP K+F+GGL T+ + YF+QFG + D VM D T R RGF
Sbjct: 148 NEDNAE-ETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGF 206
Query: 150 GFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
GF+T+ + + V++V+ K H L+GK+++ KRA+P+E
Sbjct: 207 GFLTFKNPKCVNEVMSKE-HHLDGKIIDPKRAIPRE 241
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 106/247 (42%), Positives = 145/247 (58%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GK+FIGG+SW T+ D LRDYF FGE+ E ++M+D T R+RGFGF+ FAD A ++V+
Sbjct: 21 GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLA 80
Query: 66 QKHM-IDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGL-ASTVTESDFK 123
Q H +D +T++ K A PR Q RTKKIFVGGL A+TV E D K
Sbjct: 81 QPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVE-DVK 127
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV FHE+N KMVE K+A P
Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 187
Query: 184 KELS-PGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGF 242
KE+ P +R + Y + +F+ G P+ V YG G + GF
Sbjct: 188 KEVMFPPGTRGRARGLPYTMD---AFMLGMGMLSYPNIVATYGRGYTGFAPSYSYQFPGF 244
Query: 243 --TTIGP 247
T GP
Sbjct: 245 PATAYGP 251
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 107/247 (43%), Positives = 146/247 (59%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GK+FIGG+SW T+ D LRDYF FGE+ E ++M+D T R+RGFGFI FAD + ++V+
Sbjct: 21 GKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLA 80
Query: 66 QKHM-IDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGL-ASTVTESDFK 123
Q H +D +T++ K A PR Q RTKKIFVGGL ASTV E D K
Sbjct: 81 QPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSASTVVE-DVK 127
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV FHE+N KMVE K+A P
Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVECKKAQP 187
Query: 184 KELS-PGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGF 242
KE+ P +R + + Y + +F+ G P+ V YG G + GF
Sbjct: 188 KEVMFPPGTRGRARSLPYTMD---AFMLGMGMLSYPNIVATYGRGYTGFSPSYSYQFPGF 244
Query: 243 --TTIGP 247
T GP
Sbjct: 245 PATAYGP 251
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 112/293 (38%), Positives = 161/293 (54%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GK+FIGG+ DT +F +GE+ ++VIM+DR TG+ RGFGFI FADP+V ++V+
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
H+I+G+ VE K+ +P+ Q+++ +TKKIFVGG+ STVTE + K +
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKD----------IKTKKIFVGGIPSTVTEDELKDF 128
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK-TFHELNGKMVEVKRAVPK 184
F ++G + + V+ DH T R RGFGF+ +DSEE VD++L K ++ VE+K+A PK
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Query: 185 ELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG-----LRIDGRYGPVT--I 237
+ S S G+H G S S+ + Y Y GGYG +R G GP +
Sbjct: 189 K-SLNRSPPSYGSHPRGRSSNDSYAS-YGGPYGGFD-GGYGHPPGPIRSHG--GPASRYA 243
Query: 238 GRSGFT--TIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNP---SFGG 285
G G+ ++GP +G G N N GG P L Y P FGG
Sbjct: 244 GGYGYGRGSVGPEFGGGYN---NYGGGSLGGYRNEPPLGYSSRFGPYGSGFGG 293
Score = 218 (81.8 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 49/106 (46%), Positives = 65/106 (61%)
Query: 89 QNRNNSSIHG-SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPR 147
+N N S G SPG KIF+GGL T + F K+F ++G ITD V+M D +T +PR
Sbjct: 6 RNDNFQSGDGASPG-----KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 148 GFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRN 193
GFGFIT+ VDKV+ T H +NGK VE+KR +PK S++
Sbjct: 61 GFGFITFADPSVVDKVIEDT-HVINGKQVEIKRTIPKGAGGNQSKD 105
Score = 172 (65.6 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+++ K+F+GGI ED L+D+F +G V+E +++D T R+RGFGF++F V +
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
Query: 62 RVVMQKHMID--GRTVEAKKAVPRDDQN 87
++ + +MID VE KKA P+ N
Sbjct: 165 ELLSKGNMIDMADTQVEIKKAEPKKSLN 192
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 104/245 (42%), Positives = 141/245 (57%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GK+FIGG+SW T+ + LRDYF +G++ EA++MKD T R+RGFGF+ F+DP ++V+
Sbjct: 29 GKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLT 88
Query: 66 Q-KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
Q H +DG+ V+ K A PR R + + RTKKIFVGGL++ T D K
Sbjct: 89 QGTHELDGKKVDPKVAFPR-------RAHPKM-----VTRTKKIFVGGLSAPTTLEDVKS 136
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+QFG I D ++M+D T R RGFGF+T+ SE+ VDKV FHE+N KMVE K+A PK
Sbjct: 137 YFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPK 196
Query: 185 ELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTT 244
E+ P+ N T G S + + G Y GR G SG+ +
Sbjct: 197 EVML-PA-NLAKTRAAGRSAYDNIMWGLGTLPEGFPAAAYAAYAAGR------GYSGYPS 248
Query: 245 IGPGY 249
G Y
Sbjct: 249 FGLPY 253
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 91/222 (40%), Positives = 136/222 (61%)
Query: 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64
L KLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V+
Sbjct: 54 LRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL 113
Query: 65 MQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123
+ H +DGR ++ K+ PR D NS ++ KIFVGG+ E++ +
Sbjct: 114 ASRPHTLDGRNIDPKQKGPRSD-------NS---------KSNKIFVGGIPHNCGETELR 157
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKRA P
Sbjct: 158 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 217
Query: 184 KELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
++ S + Q G +G V + NG+ P+ GYG
Sbjct: 218 RD-SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 258
Score = 167 (63.8 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 36/124 (29%), Positives = 64/124 (51%)
Query: 92 NNSSIHG-SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFG 150
++SS+ A +K+FVGGL + T+ + YF Q+G + D V+M D T + RGFG
Sbjct: 40 SHSSVSARKAAQAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFG 99
Query: 151 FITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLG--THNYGLSRVSSF 208
F+ + V VL H L+G+ ++ K+ P+ + ++ +G HN G + + +
Sbjct: 100 FVKFKDPNCVGTVLASRPHTLDGRNIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREY 159
Query: 209 LNGY 212
+
Sbjct: 160 FKKF 163
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 92/228 (40%), Positives = 136/228 (59%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
+ E K+FIGG++WDT ED LR+YF +G V + IMKD ATGR+RGFGF+ F P+
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213
Query: 61 ERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+ VV +H++DG+ ++ K+A+PRD+Q+ +T KIFVGG+ V
Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQD----------------KTGKIFVGGIGPDVRPK 257
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+F+++F Q+G I D +M D +T + RGFGF+TYDS +AVD+V F + + +E+KR
Sbjct: 258 EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKR 317
Query: 181 AVPKELSPGPSRN--QLGTHNYGLSRVSSFLN-G-YTQSYNPSSVGGY 224
A P+ + S N G +N R +F N G + Q Y +GGY
Sbjct: 318 AEPRHMQQKSSNNGGNNGGNNMN-RRGGNFGNQGDFNQMYQNPMMGGY 364
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 402 (146.6 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 79/178 (44%), Positives = 112/178 (62%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K FIGG+SWDT E+ L +FQ +G +++ IMKD ATGR+RGFGF+ F D + ++
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKD 222
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYF 126
+H++DG+ ++ K+A+ ++DQ + KIFVGG+ VTE +F +F
Sbjct: 223 RHVLDGKLIDPKRAISKEDQE----------------KVGKIFVGGIDPMVTEEEFDNFF 266
Query: 127 DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
QFG I D +M D +T R RGFGF+TYDS AVDKV + + L GK +EVKRA P+
Sbjct: 267 SQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKRAAPR 324
Score = 194 (73.4 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 43/109 (39%), Positives = 62/109 (56%)
Query: 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVV 136
A VP N +S + GP+R K F+GGL+ TE +F ++G I D
Sbjct: 135 AAGGVPPPPPPAPTANATSAESAGGPSR--KCFIGGLSWDTTEEALVSHFQKYGNIVDYT 192
Query: 137 VMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
+M D T R RGFGF+T++ ++VD LLK H L+GK+++ KRA+ KE
Sbjct: 193 IMKDSATGRSRGFGFLTFEDAKSVD-ALLKDRHVLDGKLIDPKRAISKE 240
Score = 189 (71.6 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 32/87 (36%), Positives = 57/87 (65%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
++GK+F+GGI E+ ++F FG++++ +M D+ TGR+RGFGF+ + PA ++V
Sbjct: 244 KVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKV 303
Query: 64 VMQKHM-IDGRTVEAKKAVPRDDQNIQ 89
+ K++ + G+ +E K+A PR N Q
Sbjct: 304 CVNKYLTLKGKAMEVKRAAPRGQHNQQ 330
Score = 43 (20.2 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 247 PGYGMGLNFEPNLSPSHGGGANLSPNLSY--GRGLNP-SFGG 285
P G P PS+ GG Y GRG +P S GG
Sbjct: 432 PAIPTGPKRAPPTGPSYRGGGRGGGRGGYRRGRGYHPYSRGG 473
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 394 (143.8 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 103/286 (36%), Positives = 161/286 (56%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A+ +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Query: 185 -ELSP-GPSRN-QLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRIDGR-YGPVTIG 238
E+ SR+ + G +G SR +F G ++ S GYG GR +G G
Sbjct: 191 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS-DGYG---SGRGFGD---G 243
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
+G+ GPG G NF SP +GGG YG G P +G
Sbjct: 244 YNGYGG-GPGGG---NFGG--SPGYGGGRG-----GYGGG-GPGYG 277
Score = 195 (73.7 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 64 (27.6 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 30/105 (28%), Positives = 37/105 (35%)
Query: 189 GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP 247
GP G + YG R G Y GGYG D YG G + G
Sbjct: 250 GPGGGNFGGSPGYGGGRGG--YGGGGPGYGNQG-GGYGGGYDN-YGGGNYGSGSYNDFGN 305
Query: 248 GYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRGLNPSFGGNSNR 289
N+ P S + GG N+ P +YG G + GG R
Sbjct: 306 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 350
Score = 44 (20.5 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SGS+ +G+ +P
Sbjct: 263 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGSYNDFGNYNQQP 310
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 97/282 (34%), Positives = 155/282 (54%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E E GKLF+GG+SW+T ++ L YF FG++++ V+MK+ +GR+RGFGF+ FADP
Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62
Query: 62 RVVMQ-KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
V+ H +DGRT++ K PR Q P K+F+GGL S VTE+
Sbjct: 63 HVLQNGPHTLDGRTIDPKPCNPRTLQK------------PKKGGGYKVFLGGLPSNVTET 110
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
D + +F+++G +T+VV+MYD ++ RGFGF++++ E +V+ V + + LNGK VE+K+
Sbjct: 111 DLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKK 170
Query: 181 AVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNP-SSVGGYGLRIDGRYGPVTIGR 239
A P++ S G + N T ++ + + + + P + + G ++ G P+ +
Sbjct: 171 AEPRDGSGGQNSNN-STVGGAYGKLGNECSHWGPHHAPINMMQGQNGQMGGP--PLNMP- 226
Query: 240 SGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNP 281
G + PGY G P +G G N P G G P
Sbjct: 227 IGAPNMMPGY-QGWGTSPQ-QQQYGYG-NSGPGSYQGWGAPP 265
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 395 (144.1 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 95/281 (33%), Positives = 151/281 (53%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 77
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 78 RPHTIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 126
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A+ +
Sbjct: 127 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 186
Query: 185 ELSPGPSRNQLGTH-NYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFT 243
+ ++ G N+G G ++ P + DG YG G+
Sbjct: 187 QEMQEVQNSRSGRGGNFGFGDA----RGGGGNFGPGPGSNFRGGADG-YGSGRGFGDGYN 241
Query: 244 TIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
G G G G NF SP +GGG YG G P +G
Sbjct: 242 GYGGGPGGG-NFGG--SPGYGGGRG-----GYGGG-GPGYG 273
Score = 194 (73.4 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 77 ARPHTIDGRVVEPKRAVAREESGKP 101
Score = 64 (27.6 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 30/105 (28%), Positives = 37/105 (35%)
Query: 189 GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP 247
GP G + YG R G Y GGYG D YG G + G
Sbjct: 246 GPGGGNFGGSPGYGGGRGG--YGGGGPGYGNQG-GGYGGGYDN-YGGGNYGSGNYNDFGN 301
Query: 248 GYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRGLNPSFGGNSNR 289
N+ P S + GG N+ P +YG G + GG R
Sbjct: 302 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 346
Score = 41 (19.5 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SG++ +G+ +P
Sbjct: 259 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 306
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 394 (143.8 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 103/286 (36%), Positives = 161/286 (56%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 70 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A+ +
Sbjct: 119 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Query: 185 -ELSP-GPSRN-QLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRIDGR-YGPVTIG 238
E+ SR+ + G +G SR +F G ++ S GYG GR +G G
Sbjct: 179 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS-DGYG---SGRGFGD---G 231
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
+G+ GPG G NF SP +GGG YG G P +G
Sbjct: 232 YNGYGG-GPGGG---NFGG--SPGYGGGRG-----GYGGG-GPGYG 265
Score = 195 (73.7 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKP 93
Score = 64 (27.6 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 30/105 (28%), Positives = 37/105 (35%)
Query: 189 GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP 247
GP G + YG R G Y GGYG D YG G + G
Sbjct: 238 GPGGGNFGGSPGYGGGRGG--YGGGGPGYGNQG-GGYGGGYDN-YGGGNYGSGNYNDFGN 293
Query: 248 GYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRGLNPSFGGNSNR 289
N+ P S + GG N+ P +YG G + GG R
Sbjct: 294 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 338
Score = 41 (19.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SG++ +G+ +P
Sbjct: 251 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 298
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 394 (143.8 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 103/286 (36%), Positives = 161/286 (56%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A+ +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Query: 185 -ELSP-GPSRN-QLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRIDGR-YGPVTIG 238
E+ SR+ + G +G SR +F G ++ S GYG GR +G G
Sbjct: 191 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS-DGYG---SGRGFGD---G 243
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
+G+ GPG G NF SP +GGG YG G P +G
Sbjct: 244 YNGYGG-GPGGG---NFGG--SPGYGGGRG-----GYGGG-GPGYG 277
Score = 195 (73.7 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 64 (27.6 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 30/105 (28%), Positives = 37/105 (35%)
Query: 189 GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP 247
GP G + YG R G Y GGYG D YG G + G
Sbjct: 250 GPGGGNFGGSPGYGGGRGG--YGGGGPGYGNQG-GGYGGGYDN-YGGGNYGSGNYNDFGN 305
Query: 248 GYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRGLNPSFGGNSNR 289
N+ P S + GG N+ P +YG G + GG R
Sbjct: 306 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 350
Score = 41 (19.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SG++ +G+ +P
Sbjct: 263 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 310
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 394 (143.8 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 103/286 (36%), Positives = 161/286 (56%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A+ +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Query: 185 -ELSP-GPSRN-QLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRIDGR-YGPVTIG 238
E+ SR+ + G +G SR +F G ++ S GYG GR +G G
Sbjct: 191 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS-DGYG---SGRGFGD---G 243
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
+G+ GPG G NF SP +GGG YG G P +G
Sbjct: 244 YNGYGG-GPGGG---NFGG--SPGYGGGRG-----GYGGG-GPGYG 277
Score = 195 (73.7 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 64 (27.6 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 30/105 (28%), Positives = 37/105 (35%)
Query: 189 GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP 247
GP G + YG R G Y GGYG D YG G + G
Sbjct: 250 GPGGGNFGGSPGYGGGRGG--YGGGGPGYGNQG-GGYGGGYDN-YGGGNYGSGNYNDFGN 305
Query: 248 GYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRGLNPSFGGNSNR 289
N+ P S + GG N+ P +YG G + GG R
Sbjct: 306 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 350
Score = 41 (19.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SG++ +G+ +P
Sbjct: 263 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 310
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 394 (143.8 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 103/286 (36%), Positives = 161/286 (56%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 81 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 129
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A+ +
Sbjct: 130 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 189
Query: 185 -ELSP-GPSRN-QLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRIDGR-YGPVTIG 238
E+ SR+ + G +G SR +F G ++ S GYG GR +G G
Sbjct: 190 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS-DGYG---SGRGFGD---G 242
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
+G+ GPG G NF SP +GGG YG G P +G
Sbjct: 243 YNGYGG-GPGGG---NFGG--SPGYGGGRG-----GYGGG-GPGYG 276
Score = 195 (73.7 bits), Expect = 8.2e-16, Sum P(2) = 8.2e-16
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKP 104
Score = 64 (27.6 bits), Expect = 8.2e-16, Sum P(2) = 8.2e-16
Identities = 30/105 (28%), Positives = 37/105 (35%)
Query: 189 GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP 247
GP G + YG R G Y GGYG D YG G + G
Sbjct: 249 GPGGGNFGGSPGYGGGRGG--YGGGGPGYGNQG-GGYGGGYDN-YGGGNYGSGNYNDFGN 304
Query: 248 GYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRGLNPSFGGNSNR 289
N+ P S + GG N+ P +YG G + GG R
Sbjct: 305 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 349
Score = 41 (19.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SG++ +G+ +P
Sbjct: 262 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 309
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 393 (143.4 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 103/286 (36%), Positives = 160/286 (55%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VDK+ L+ +H +NG EV++A+ +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSR 190
Query: 185 -ELSP-GPSRN-QLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRIDGR-YGPVTIG 238
E+ SR+ + G +G SR +F G ++ S GYG GR +G G
Sbjct: 191 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS-DGYG---SGRGFGD---G 243
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
+G+ GPG G NF SP +GGG YG G P +G
Sbjct: 244 YNGYGG-GPGGG---NFGG--SPGYGGGRG-----GYGGG-GPGYG 277
Score = 195 (73.7 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 64 (27.6 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 30/105 (28%), Positives = 37/105 (35%)
Query: 189 GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP 247
GP G + YG R G Y GGYG D YG G + G
Sbjct: 250 GPGGGNFGGSPGYGGGRGG--YGGGGPGYGNQG-GGYGGGYDN-YGGGNYGSGNYNDFGN 305
Query: 248 GYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRGLNPSFGGNSNR 289
N+ P S + GG N+ P +YG G + GG R
Sbjct: 306 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 350
Score = 41 (19.5 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SG++ +G+ +P
Sbjct: 263 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 310
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 387 (141.3 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 84/184 (45%), Positives = 115/184 (62%)
Query: 22 LRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ-KHMIDGRTVEAKKA 80
LR+YF FGEV E ++M+D T R+RGFGF+ F D A ++V+ Q +H +D +T++ K A
Sbjct: 3 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 62
Query: 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD 140
PR Q RTKKIFVGGL+ T D K YF+QFG + D ++M+D
Sbjct: 63 FPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD 110
Query: 141 HNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE-LSP-GPSRNQLGTH 198
T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE +SP G +R +
Sbjct: 111 KTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVM 170
Query: 199 NYGL 202
YG+
Sbjct: 171 PYGM 174
Score = 171 (65.3 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 32/79 (40%), Positives = 53/79 (67%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-M 65
K+F+GG+S +T + ++ YF+ FG+V +A++M D+ T R RGFGF+ F + E+V +
Sbjct: 77 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 66 QKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 137 HFHEINNKMVECKKAQPKE 155
Score = 45 (20.9 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP G N S VSS+++ + + PS+ G+G + G
Sbjct: 279 SPGPMAELYGAANQD-SGVSSYISAASPA--PST--GFGHSLGG 317
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 390 (142.3 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 103/286 (36%), Positives = 160/286 (55%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ H +NG EV++A+ +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSR 190
Query: 185 -ELSP-GPSRN-QLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRIDGR-YGPVTIG 238
E+ SR+ + G +G SR +F G ++ S GYG GR +G G
Sbjct: 191 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS-DGYG---SGRGFGD---G 243
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
+G+ GPG G NF SP +GGG YG G P +G
Sbjct: 244 YNGYGG-GPGGG---NFGG--SPGYGGGRG-----GYGGG-GPGYG 277
Score = 195 (73.7 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 64 (27.6 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 30/105 (28%), Positives = 37/105 (35%)
Query: 189 GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP 247
GP G + YG R G Y GGYG D YG G + G
Sbjct: 250 GPGGGNFGGSPGYGGGRGG--YGGGGPGYGNQG-GGYGGGYDN-YGGGNYGSGNYNDFGN 305
Query: 248 GYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRGLNPSFGGNSNR 289
N+ P S + GG N+ P +YG G + GG R
Sbjct: 306 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 350
Score = 41 (19.5 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SG++ +G+ +P
Sbjct: 263 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 310
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 159/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 33 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 92
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 93 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 141
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 142 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 201
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 202 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 261
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G GYG G S +G G N G G + S+ +N
Sbjct: 262 GDGYNGFGNDG-GYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNN 313
Score = 214 (80.4 bits), Expect = 7.4e-19, Sum P(2) = 7.4e-19
Identities = 43/103 (41%), Positives = 67/103 (65%)
Query: 89 QNRNNSSIHGSPG-PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPR 147
+ R+ + SP P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R R
Sbjct: 17 RRRDKKARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 76
Query: 148 GFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
GFGF+TY + E VD + H+++G++VE KRAV +E S P
Sbjct: 77 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 119
Score = 73 (30.8 bits), Expect = 7.4e-19, Sum P(2) = 7.4e-19
Identities = 31/104 (29%), Positives = 41/104 (39%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNP-SSVGGYGLRIDGRYGPVT---IGRSGFTT 244
G N G +G SR G YN + GGYG G G G G+
Sbjct: 238 GRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGN 297
Query: 245 IGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G GYG +++ S ++GGG YG G +FGG +
Sbjct: 298 QGSGYGGSGSYD---SYNNGGGGG-----GYGGGSGSNFGGGGS 333
Score = 58 (25.5 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G YG S+F G SYN G Y + +GP+ G G + GP YG G +
Sbjct: 316 GGGGYGGGSGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGP-YGGGGGY 369
Query: 256 E-PNLSPSHGGG 266
+ S S+G G
Sbjct: 370 GGSSSSSSYGSG 381
Score = 56 (24.8 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 28/100 (28%), Positives = 39/100 (39%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPG 248
G SR G+ G S G + SY+ + GG G G G G + G
Sbjct: 283 GGSRGY-GSGGQGYGNQGSGYGG-SGSYDSYNNGGGGGGYGGGSGSNFGGGGSYNDFGNY 340
Query: 249 YGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
NF P + + GG + P YG G +GG+S+
Sbjct: 341 NNQSSNFGP-MKGGNFGGRSSGP---YGGG--GGYGGSSS 374
Score = 54 (24.1 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 210 NGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
N + ++ P G +G R G YG G G ++ YG G F
Sbjct: 341 NNQSSNFGPMKGGNFGGRSSGPYGGG--GGYGGSSSSSSYGSGRRF 384
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 159/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G GYG G S +G G N G G + S+ +N
Sbjct: 241 GDGYNGFGNDG-GYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNN 292
Score = 213 (80.0 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 73 (30.8 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 31/104 (29%), Positives = 41/104 (39%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNP-SSVGGYGLRIDGRYGPVT---IGRSGFTT 244
G N G +G SR G YN + GGYG G G G G+
Sbjct: 217 GRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGN 276
Query: 245 IGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G GYG +++ S ++GGG YG G +FGG +
Sbjct: 277 QGSGYGGSGSYD---SYNNGGGGG-----GYGGGSGSNFGGGGS 312
Score = 70 (29.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 28/84 (33%), Positives = 37/84 (44%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G YG S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 295 GGGGYGGGSGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 349
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 350 AKPRNQGGYGGSSSSS---SYGSG 370
Score = 48 (22.0 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 25/90 (27%), Positives = 33/90 (36%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPG 248
G SR G+ G S G + SY+ + GG G G G G + G
Sbjct: 262 GGSRGY-GSGGQGYGNQGSGYGG-SGSYDSYNNGGGGGGYGGGSGSNFGGGGSYNDFGNY 319
Query: 249 YGMGLNFEPNLSPSHGGGANLSPNLSYGRG 278
NF P + + GG + P YG G
Sbjct: 320 NNQSSNFGP-MKGGNFGGRSSGP---YGGG 345
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 159/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G GYG G S +G G N G G + S+ +N
Sbjct: 241 GDGYNGFGNDG-GYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNN 292
Score = 213 (80.0 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 69 (29.3 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 30/104 (28%), Positives = 41/104 (39%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNP-SSVGGYGLRIDGRYGPVT---IGRSGFTT 244
G N G +G SR G YN + GGYG G G G G+
Sbjct: 217 GRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGN 276
Query: 245 IGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G GYG +++ S ++GGG +G G +FGG +
Sbjct: 277 QGSGYGGSGSYD---SYNNGGGGG-----GFGGGSGSNFGGGGS 312
Score = 66 (28.3 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 27/84 (32%), Positives = 37/84 (44%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G +G S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 295 GGGGFGGGSGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 349
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 350 AKPRNQGGYGGSSSSS---SYGSG 370
Score = 49 (22.3 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 25/90 (27%), Positives = 33/90 (36%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPG 248
G SR G+ G S G + SY+ + GG G G G G + G
Sbjct: 262 GGSRGY-GSGGQGYGNQGSGYGG-SGSYDSYNNGGGGGGFGGGSGSNFGGGGSYNDFGNY 319
Query: 249 YGMGLNFEPNLSPSHGGGANLSPNLSYGRG 278
NF P + + GG + P YG G
Sbjct: 320 NNQSSNFGP-MKGGNFGGRSSGP---YGGG 345
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 159/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G GYG G S +G G N G G + S+ +N
Sbjct: 241 GDGYNGFGNDG-GYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNN 292
Score = 213 (80.0 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 70 (29.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 29/89 (32%), Positives = 39/89 (43%)
Query: 191 SRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYG 250
S N G +G S+F G SYN G Y + +GP+ G G + GP G
Sbjct: 289 SYNNGGGGGFGGGSGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGG 343
Query: 251 MGLNF-EPNLSPSHGGGANLSPNLSYGRG 278
G F +P +GG ++ S SYG G
Sbjct: 344 GGQYFAKPRNQGGYGGSSSSS---SYGSG 369
Score = 67 (28.6 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 30/104 (28%), Positives = 41/104 (39%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNP-SSVGGYGLRIDGRYGPVT---IGRSGFTT 244
G N G +G SR G YN + GGYG G G G G+
Sbjct: 217 GRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGN 276
Query: 245 IGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G GYG +++ S ++GGG +G G +FGG +
Sbjct: 277 QGSGYGGSGSYD---SYNNGGGGG------FGGGSGSNFGGGGS 311
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 160/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 286
Score = 213 (80.0 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 64 (27.6 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 243 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 297 AKPRNQGGYGGSSSSS---SYGSG 317
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 160/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 286
Score = 213 (80.0 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 64 (27.6 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 243 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 297 AKPRNQGGYGGSSSSS---SYGSG 317
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 160/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 286
Score = 213 (80.0 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 64 (27.6 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 243 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 297 AKPRNQGGYGGSSSSS---SYGSG 317
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 160/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 286
Score = 213 (80.0 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 64 (27.6 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 243 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 297 AKPRNQGGYGGSSSSS---SYGSG 317
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 160/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 286
Score = 213 (80.0 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 64 (27.6 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 243 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 297 AKPRNQGGYGGSSSSS---SYGSG 317
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 160/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 286
Score = 213 (80.0 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 45 (20.9 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMG 252
G + +G + S+F G SYN G Y + +GP+ G G + GP YG G
Sbjct: 243 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGP-YGGG 292
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 160/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 286
Score = 213 (80.0 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 45 (20.9 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMG 252
G + +G + S+F G SYN G Y + +GP+ G G + GP YG G
Sbjct: 243 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGP-YGGG 292
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 391 (142.7 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 103/286 (36%), Positives = 147/286 (51%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV + I D TGR+RGFGFI+F +P+ +
Sbjct: 91 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVD 150
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ + + KKIFVGGL TE
Sbjct: 151 KVLAQKEHRLDGRQIDPKKAMAMKKEPV-----------------KKIFVGGLNPETTEE 193
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK------ 174
++YF FG I + + D + + RGF FIT+ EEAV K+L K +H ++G
Sbjct: 194 RIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEKKYHNVSGTKDTSGK 253
Query: 175 --MVEVKRAVPKELSPGPSRN-QLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGR 231
+ E+K A PKE+ + G G R N + Q YN GYG + G
Sbjct: 254 EGLCEIKIAQPKEVYQQQQYGGRFGGGGRGRGRGGQGQN-WNQGYNNYWNQGYGNQGYGG 312
Query: 232 YGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGR 277
YG G+ G+ G GYG ++ +GG N SYG+
Sbjct: 313 YG----GQQGYGGYG-GYG-NYDYSGGYYGGYGGYDYNQGNTSYGK 352
Score = 194 (73.4 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 38/97 (39%), Positives = 55/97 (56%)
Query: 92 NNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGF 151
+ I S G K+FVGGL+ ++ D K YF +FG +TD + D NT R RGFGF
Sbjct: 81 DGGQIDASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGF 140
Query: 152 ITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
I + VDKVL + H L+G+ ++ K+A+ + P
Sbjct: 141 ILFKEPSGVDKVLAQKEHRLDGRQIDPKKAMAMKKEP 177
Score = 38 (18.4 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 455 SAGYVGGYSVTD-RQAN 470
S GY GGY D Q N
Sbjct: 331 SGGYYGGYGGYDYNQGN 347
Score = 37 (18.1 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 405 GSYDVAYGDIYESGSFYG 422
G Y YG+ SG +YG
Sbjct: 320 GGYG-GYGNYDYSGGYYG 336
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 388 (141.6 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 103/286 (36%), Positives = 159/286 (55%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S+ T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 70 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF ++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A+ +
Sbjct: 119 YFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Query: 185 -ELSP-GPSRN-QLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRIDGR-YGPVTIG 238
E+ SR+ + G +G SR +F G ++ S GYG GR +G G
Sbjct: 179 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS-DGYG---SGRGFGD---G 231
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
+G+ GPG G NF SP +GGG YG G P +G
Sbjct: 232 YNGYGG-GPGGG---NFGG--SPGYGGGRG-----GYGGG-GPGYG 265
Score = 195 (73.7 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKP 93
Score = 64 (27.6 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 30/105 (28%), Positives = 37/105 (35%)
Query: 189 GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP 247
GP G + YG R G Y GGYG D YG G + G
Sbjct: 238 GPGGGNFGGSPGYGGGRGG--YGGGGPGYGNQG-GGYGGGYDN-YGGGNYGSGNYNDFGN 293
Query: 248 GYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRGLNPSFGGNSNR 289
N+ P S + GG N+ P +YG G + GG R
Sbjct: 294 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 338
Score = 41 (19.5 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SG++ +G+ +P
Sbjct: 251 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 298
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 102/293 (34%), Positives = 160/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 241 GDGYNGFGNDGNNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 286
Score = 213 (80.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 63 (27.2 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 215 SYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF-EPNLSPSHGGGANLSPNL 273
SYN G Y + +GP+ G G + GP G G F +P +GG ++ S
Sbjct: 259 SYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSS--- 312
Query: 274 SYGRG 278
SYG G
Sbjct: 313 SYGSG 317
Score = 48 (22.0 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 210 NGYTQSYNPSSVGGYGLRIDGRYG--------PVTIGRSGFTTIGPGYGMGLNF 255
N + ++ P G +G R G YG P G G ++ YG G F
Sbjct: 267 NNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF 320
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 383 (139.9 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 83/184 (45%), Positives = 115/184 (62%)
Query: 22 LRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ-KHMIDGRTVEAKKA 80
LR+YF FGE E ++M+D T R+RGFGF+ F D A ++V+ Q +H +D +T++ K A
Sbjct: 3 LREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 62
Query: 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD 140
PR Q RTKKIFVGGL+ T D K+YF+QFG + D ++M+D
Sbjct: 63 FPRRAQPKM------------VTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFD 110
Query: 141 HNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE-LSP-GPSRNQLGTH 198
T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE +SP G +R +
Sbjct: 111 KTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVM 170
Query: 199 NYGL 202
YG+
Sbjct: 171 PYGM 174
Score = 172 (65.6 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 32/79 (40%), Positives = 53/79 (67%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-M 65
K+F+GG+S +T + ++ YF+ FG+V +A++M D+ T R RGFGF+ F + E+V +
Sbjct: 77 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 66 QKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 137 HFHEINNKMVECKKAQPKE 155
Score = 45 (20.9 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP G N S VSS+++ + + PS+ G+G + G
Sbjct: 282 SPGPMAELYGATNQD-SGVSSYISAASPA--PST--GFGHSLGG 320
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 101/294 (34%), Positives = 159/294 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D +VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSP----NLSYGRGLNPSFGG 285
G +GF G +G G ++ + + +N P N GR L P GG
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN-DFGNYNNQSSNFGPMKGGNFG-GRSLGPYGGG 292
Score = 213 (80.0 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 68 (29.0 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN G Y + +GP+ G G ++GP G G F
Sbjct: 243 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSLGPYGGGGQYF 296
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 297 AKPRNQGGYGGSSSSS---SYGSG 317
Score = 41 (19.5 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 266 GANLSPNLSYGRGLNPSFGGNSN 288
G + S N GRG FGGN N
Sbjct: 195 GRSGSGNFGGGRG--GGFGGNDN 215
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 102/293 (34%), Positives = 160/293 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LCKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 286
Score = 213 (80.0 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 64 (27.6 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 243 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 297 AKPRNQGGYGGSSSSS---SYGSG 317
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 101/293 (34%), Positives = 158/293 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 V-MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNTTPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H + G EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYGLRIDGR-YGPV 235
+PK E++ S R + G+ N+G R F + + + N S GG+G G YG
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 286
Score = 219 (82.2 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 41/89 (46%), Positives = 62/89 (69%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ T H+++G++VE KRAV +E S P
Sbjct: 70 AAMNTTPHKVDGRVVEPKRAVSREDSQRP 98
Score = 61 (26.5 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 27/84 (32%), Positives = 38/84 (45%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 243 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 256 EPNLSPSHGGGANLSPNLS-YGRG 278
P + GG +S + S YG G
Sbjct: 297 A---KPQNQGGYGVSSSSSSYGSG 317
Score = 51 (23.0 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 210 NGYTQSYNPSSVGGYGLRIDGRYG--------PVTIGRSGFTTIGPGYGMGLNF 255
N + ++ P G +G R G YG P G G ++ YG G F
Sbjct: 267 NNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSGRRF 320
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 75/161 (46%), Positives = 108/161 (67%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E GK+FIGG++W+T + L++YF FGEV E +M+D ATGR+RGFGF+ F DP V
Sbjct: 108 EDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTV 167
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123
++++H +DG+ ++ K+A+PRD+Q +T KIFVGG++ TE DFK
Sbjct: 168 MVKEHYLDGKIIDPKRAIPRDEQE----------------KTSKIFVGGVSQEATEQDFK 211
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
++F QFG + D +M D +T RPRGFGF+T+DSE AV+ L
Sbjct: 212 QFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAAL 252
Score = 189 (71.6 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 40/106 (37%), Positives = 61/106 (57%)
Query: 85 DQNIQNRNNSSIHGSPGPARTK-----KIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
D N+ + G P P T K+F+GGL T+ K+YF QFG + + VM
Sbjct: 85 DSGYNNQTTGPV-GEPEPQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMR 143
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
D T R RGFGF+T+ + V+ V++K H L+GK+++ KRA+P++
Sbjct: 144 DSATGRSRGFGFLTFKDPKTVNTVMVKE-HYLDGKIIDPKRAIPRD 188
Score = 187 (70.9 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 65/259 (25%), Positives = 111/259 (42%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GG+S + E + +F FG V++A +M D+ TGR RGFGF+ F A E + +
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Query: 67 KHMIDGRTVEAKKAVPR----DDQNIQNRNNSSIHGSPGP---------ARTKKIFVGGL 113
I G+T+E KKA PR DD + R GS G A+ + + GGL
Sbjct: 255 PLEILGKTIEVKKAQPRGNLRDDGDRGRRGRDFRDGSQGGSDGSQQQAGAQGQGVMPGGL 314
Query: 114 ASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELN- 172
+ +++ F ++ + + Q G + + ++ +K ++
Sbjct: 315 TPQMMAQYWQRMQQYFALMQQQMAVAATQGQGMGAMGMAGMNPA-LMQQMQMKQLQQMQM 373
Query: 173 GKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRY 232
G + P SP P Q + + ++ + Q+ N G G+ +G
Sbjct: 374 GNNQQSPSMSPPAQSPTPQSMQNMMNPAMMQQMQQQMPNQGQANNMG--GQMGMGGNGS- 430
Query: 233 GPVTIGRS--GFTTIGPGY 249
G + +G + G GPGY
Sbjct: 431 GNMNMGSNYAGGGRGGPGY 449
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 102/287 (35%), Positives = 152/287 (52%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T +D LR +F+ +G + + V+MKD T R+RGFGF+ ++ V
Sbjct: 31 QLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNAS 90
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
+ + H +DGR VE K+AV R+D + H + KKIFVGG+ E+
Sbjct: 91 MDARPHKVDGRLVEPKRAVSREDSS-----KPFAHTT-----VKKIFVGGIKDDTEENHL 140
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YFDQFG I V +M DH T RGF F+T+D ++VD+++++ +H +NG EV++A+
Sbjct: 141 RDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKAL 200
Query: 183 PKELSPGPSRNQLGTHNYGLSRVSSFLN--GYTQSYNPSSVGGYGLRIDGRYGPVTIGRS 240
K+ R G G + + N GY + GG G R DG +G G +
Sbjct: 201 SKQEMANTGRGGGGGGGGGGGNFNRYGNNGGYNNDFGGG--GGGGNR-DGYFGRGGRGNN 257
Query: 241 -GFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGN 286
G G GYG G + N + GGG G G ++GGN
Sbjct: 258 FGGGGGGGGYGGGGDCYNNNNGFGGGG--YGGGGGNGGGSPGNYGGN 302
Score = 210 (79.0 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 42/97 (43%), Positives = 64/97 (65%)
Query: 95 SIHGSPG-PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S G P P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+T
Sbjct: 21 SKEGQPREPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVT 80
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
Y S + V+ + H+++G++VE KRAV +E S P
Sbjct: 81 YSSVDEVNASMDARPHKVDGRLVEPKRAVSREDSSKP 117
Score = 59 (25.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 28/97 (28%), Positives = 34/97 (35%)
Query: 193 NQLGTHNYGLSRVSSFLNGYTQSYNPS-SVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGM 251
NQ G YG GY N + + GG G G + G + G
Sbjct: 317 NQGG--GYGGGNSGGGGGGYNNYNNGNGNFGGGNFGGGGGGGGNSGGGGNYNDFGNYNSQ 374
Query: 252 GLNFEPNLSPSHGGGANLSP-NLSYGRGLNPSFGGNS 287
N+ P GGG N P YG G + S GG S
Sbjct: 375 QSNYGPMKGNFGGGGRNSGPYGGGYGGGSSGSGGGGS 411
Score = 57 (25.1 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 24/67 (35%), Positives = 28/67 (41%)
Query: 222 GGYGLRIDGRYGPVTIGRSGFTTIGPGYG-MGLNFEPNLSPSHGGGANLSPNLSYGRGLN 280
GG G G YG G G G GYG G + S GGG N +Y G N
Sbjct: 289 GGNGGGSPGNYGG-NRGYGGGGGGGHGYGNQGGGYGGGNSGGGGGGYN-----NYNNG-N 341
Query: 281 PSFGGNS 287
+FGG +
Sbjct: 342 GNFGGGN 348
Score = 49 (22.3 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 21/76 (27%), Positives = 30/76 (39%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPV--TIGRSGFTT--IGPGYGM 251
G N+G +G +YN G Y + YGP+ G G + G GYG
Sbjct: 345 GGGNFGGGGGGGGNSGGGGNYN--DFGNYNSQ-QSNYGPMKGNFGGGGRNSGPYGGGYGG 401
Query: 252 GLNFEPNLSPSHGGGA 267
G + +GGG+
Sbjct: 402 GSSGSGGGGSGYGGGS 417
Score = 41 (19.5 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
Identities = 20/66 (30%), Positives = 22/66 (33%)
Query: 222 GGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNP 281
GGYG D G G+ G G G G N + G G YG
Sbjct: 265 GGYGGGGDCYNNNNGFGGGGY---GGGGGNGGGSPGNYGGNRGYGGGGGGGHGYGNQGGG 321
Query: 282 SFGGNS 287
GGNS
Sbjct: 322 YGGGNS 327
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 105/272 (38%), Positives = 145/272 (53%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D A E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF +FG I + + D + RGF FIT+ EE V KVL K FH ++G E+K
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKV 228
Query: 181 AVPKEL-------SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
A PKE+ S G G G + S+ GY +N GYG + G YG
Sbjct: 229 AQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQ----GYGYQ-QG-YG 282
Query: 234 PVTIGRSGFTTIGP-GYGMGLNFEPNLSPSHG 264
P G ++ G GYG G ++ S ++G
Sbjct: 283 P-GYGGYDYSPYGYYGYGPGYDYSQG-STNYG 312
Score = 186 (70.5 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVV 136
A A P +QN I+ S K+FVGGL+ ++ D K YF +FG + D
Sbjct: 43 ATAAPPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT 100
Query: 137 VMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
+ D NT R RGFGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
Score = 44 (20.5 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 249 YGMGLNFEPNL-SPSHGGGANLSPNLSYGRGLNPSFG 284
YG G N + GGG + S N YG N +G
Sbjct: 240 YGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYG 276
Score = 44 (20.5 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 191 SRNQ-LGTH-NYGLSRVSSFLNGYT-QSYNPSSVGGYGLRIDGRYGPVTIGRS 240
S NQ G + N G + GY Y+P GYG D G G+S
Sbjct: 262 SWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKS 314
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 98/271 (36%), Positives = 153/271 (56%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGG 266
G +GF G GYG G + S S+G G
Sbjct: 241 GDGYNGFGNDG-GYG-G----SSSSSSYGSG 265
Score = 213 (80.0 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 47 (21.6 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 19/49 (38%), Positives = 20/49 (40%)
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGN 286
GRSG G G G G N G G N S GRG FGG+
Sbjct: 195 GRSGSGNFGGGRGGGFGGNDNF----GRGGNFS-----GRG---GFGGS 231
Score = 41 (19.5 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 266 GANLSPNLSYGRGLNPSFGGNSN 288
G + S N GRG FGGN N
Sbjct: 195 GRSGSGNFGGGRG--GGFGGNDN 215
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 104/272 (38%), Positives = 145/272 (53%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D + E
Sbjct: 70 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 129
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 130 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 172
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V KVL K FH ++G E+K
Sbjct: 173 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 232
Query: 181 AVPKEL-------SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
A PKE+ S G G G + S+ GY +N GYG + G YG
Sbjct: 233 AQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQ----GYGYQ-QG-YG 286
Query: 234 PVTIGRSGFTTIGP-GYGMGLNFEPNLSPSHG 264
P G ++ G GYG G ++ S ++G
Sbjct: 287 P-GYGGYDYSPYGYYGYGPGYDYSQG-STNYG 316
Score = 188 (71.2 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 39/109 (35%), Positives = 60/109 (55%)
Query: 80 AVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
A P +QN I+ S K+FVGGL+ ++ D K YF +FG + D +
Sbjct: 50 AAPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM 107
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
D NT R RGFGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 108 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 156
Score = 44 (20.5 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 249 YGMGLNFEPNL-SPSHGGGANLSPNLSYGRGLNPSFG 284
YG G N + GGG + S N YG N +G
Sbjct: 244 YGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYG 280
Score = 44 (20.5 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 191 SRNQ-LGTH-NYGLSRVSSFLNGYT-QSYNPSSVGGYGLRIDGRYGPVTIGRS 240
S NQ G + N G + GY Y+P GYG D G G+S
Sbjct: 266 SWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKS 318
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 104/272 (38%), Positives = 145/272 (53%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V KVL K FH ++G E+K
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 233
Query: 181 AVPKEL-------SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
A PKE+ S G G G + S+ GY +N GYG + G YG
Sbjct: 234 AQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQ----GYGYQ-QG-YG 287
Query: 234 PVTIGRSGFTTIGP-GYGMGLNFEPNLSPSHG 264
P G ++ G GYG G ++ S ++G
Sbjct: 288 P-GYGGYDYSPYGYYGYGPGYDYSQG-STNYG 317
Score = 188 (71.2 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 39/109 (35%), Positives = 60/109 (55%)
Query: 80 AVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
A P +QN I+ S K+FVGGL+ ++ D K YF +FG + D +
Sbjct: 51 AAPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM 108
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
D NT R RGFGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
Score = 44 (20.5 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 249 YGMGLNFEPNL-SPSHGGGANLSPNLSYGRGLNPSFG 284
YG G N + GGG + S N YG N +G
Sbjct: 245 YGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYG 281
Score = 44 (20.5 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 191 SRNQ-LGTH-NYGLSRVSSFLNGYT-QSYNPSSVGGYGLRIDGRYGPVTIGRS 240
S NQ G + N G + GY Y+P GYG D G G+S
Sbjct: 267 SWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKS 319
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 106/306 (34%), Positives = 163/306 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 11 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 70
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 71 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 119
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 120 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
Query: 182 VPKE--LSPGPSRNQLGTHNYGLSRVSSFLNG---YTQSYNPSSVGGYGLRIDGRYGPVT 236
+ K+ S G R + G + R +F G + + N GY R G YG
Sbjct: 180 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNYGGGPGYSSR--GGYGG-- 235
Query: 237 IGRSGFTTIGPGYGMGLNFEP-----NLSP-SHGGGANLSP--NLS------YGRGLNPS 282
G G+ G GYG G ++ N ++GGG N + N S YG S
Sbjct: 236 -GGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGS 294
Query: 283 FGGNSN 288
FGG S+
Sbjct: 295 FGGRSS 300
Score = 209 (78.6 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 47/124 (37%), Positives = 72/124 (58%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++G +TD VVM D T+R RGFGF+TY
Sbjct: 4 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 63
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGY---T 213
E VD + H+++G++VE KRAV +E S P G H L+ F+ G T
Sbjct: 64 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-----GAH---LTVKKIFVGGIKEDT 115
Query: 214 QSYN 217
+ YN
Sbjct: 116 EEYN 119
Score = 38 (18.4 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSFYG 422
G G +GR P S++G Y G YG
Sbjct: 209 GGGGGNFGRGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYG 248
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 376 (137.4 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 85/233 (36%), Positives = 133/233 (57%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++FQ +G + + V+M+D T R+RGFGF+ ++ V +
Sbjct: 11 QLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAM 70
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 71 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTGEYNL 119
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A+
Sbjct: 120 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 179
Query: 183 PKE--LSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
K+ S G R G + +F G ++ GYG + G YG
Sbjct: 180 SKQEMQSAGSQRGCGGGSGNFMGHGGNF-GGGGGNFGRGGNSGYGNQ-GGGYG 230
Score = 205 (77.2 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 40/95 (42%), Positives = 62/95 (65%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F ++G +TD VVM D T+R RGFGF+TY
Sbjct: 4 HDPKEPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 63
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKE--LSPG 189
EE VD + H+++G++VE KRAV +E + PG
Sbjct: 64 EE-VDAAMCARPHKVDGRVVEPKRAVSREDSVKPG 97
Score = 40 (19.1 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 238 GRSGFTTIGPGYGMG 252
G SG+ G GYG G
Sbjct: 218 GNSGYGNQGGGYGGG 232
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 100/287 (34%), Positives = 153/287 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 93 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 182 VPKE--LSPGPSRNQLGTHNYGLSRVSSFLNG--YTQSYNPSSVGGYGLRIDGRYGPVTI 237
+ K+ S G R + G + R +F G + + N GGYG G G
Sbjct: 202 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 261
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
G G+ G G G N+ GGG S YG G P +G
Sbjct: 262 GDGGYNGFG---GDGGNY--------GGGPGYSSRGGYGGG-GPGYG 296
Score = 213 (80.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 50/140 (35%), Positives = 77/140 (55%)
Query: 82 PRDDQNIQNRNNSSI-HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD 140
P+ D + R H P + +K+F+GGL+ T+ +++F+++G +TD VVM D
Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNY 200
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P G H
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-----GAH-- 122
Query: 201 GLSRVSSFLNGY---TQSYN 217
L+ F+ G T+ YN
Sbjct: 123 -LTVKKIFVGGIKEDTEEYN 141
Score = 53 (23.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 201 GLSRVSSFLNG-YTQSYNPSSVGGYGLRIDGRYGPVTIG----RSGFTTIGPGYGMG 252
G + +F G Y N + G Y + YGP+ G RS + G GYG G
Sbjct: 311 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSG 367
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 101/285 (35%), Positives = 154/285 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 93 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 182 VPKE--LSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
+ K+ S G R + G + R +F G N G +G R G YG G
Sbjct: 202 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGG---GGNFGRGGNFGGR--GGYGGGGGGS 256
Query: 240 SGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
G + G G G G N ++GGG S YG G P +G
Sbjct: 257 RG--SYGGGDG-GYNGFGGDGGNYGGGPGYSSRGGYGGG-GPGYG 297
Score = 213 (80.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 50/140 (35%), Positives = 77/140 (55%)
Query: 82 PRDDQNIQNRNNSSI-HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD 140
P+ D + R H P + +K+F+GGL+ T+ +++F+++G +TD VVM D
Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNY 200
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P G H
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-----GAH-- 122
Query: 201 GLSRVSSFLNGY---TQSYN 217
L+ F+ G T+ YN
Sbjct: 123 -LTVKKIFVGGIKEDTEEYN 141
Score = 53 (23.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 201 GLSRVSSFLNG-YTQSYNPSSVGGYGLRIDGRYGPVTIG----RSGFTTIGPGYGMG 252
G + +F G Y N + G Y + YGP+ G RS + G GYG G
Sbjct: 311 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSG 367
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 101/285 (35%), Positives = 154/285 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 93 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 182 VPKE--LSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
+ K+ S G R + G + R +F G N G +G R G YG G
Sbjct: 202 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGG---GGNFGRGGNFGGR--GGYGGGGGGS 256
Query: 240 SGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
G + G G G G N ++GGG S YG G P +G
Sbjct: 257 RG--SYGGGDG-GYNGFGGDGGNYGGGPGYSSRGGYGGG-GPGYG 297
Score = 213 (80.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 50/140 (35%), Positives = 77/140 (55%)
Query: 82 PRDDQNIQNRNNSSI-HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD 140
P+ D + R H P + +K+F+GGL+ T+ +++F+++G +TD VVM D
Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNY 200
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P G H
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-----GAH-- 122
Query: 201 GLSRVSSFLNGY---TQSYN 217
L+ F+ G T+ YN
Sbjct: 123 -LTVKKIFVGGIKEDTEEYN 141
Score = 53 (23.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 201 GLSRVSSFLNG-YTQSYNPSSVGGYGLRIDGRYGPVTIG----RSGFTTIGPGYGMG 252
G + +F G Y N + G Y + YGP+ G RS + G GYG G
Sbjct: 312 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSG 368
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 101/285 (35%), Positives = 154/285 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 93 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 182 VPKE--LSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
+ K+ S G R + G + R +F G N G +G R G YG G
Sbjct: 202 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGG---GGNFGRGGNFGGR--GGYGGGGGGS 256
Query: 240 SGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
G + G G G G N ++GGG S YG G P +G
Sbjct: 257 RG--SYGGGDG-GYNGFGGDGGNYGGGPGYSSRGGYGGG-GPGYG 297
Score = 213 (80.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 50/140 (35%), Positives = 77/140 (55%)
Query: 82 PRDDQNIQNRNNSSI-HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD 140
P+ D + R H P + +K+F+GGL+ T+ +++F+++G +TD VVM D
Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNY 200
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P G H
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-----GAH-- 122
Query: 201 GLSRVSSFLNGY---TQSYN 217
L+ F+ G T+ YN
Sbjct: 123 -LTVKKIFVGGIKEDTEEYN 141
Score = 53 (23.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 201 GLSRVSSFLNG-YTQSYNPSSVGGYGLRIDGRYGPVTIG----RSGFTTIGPGYGMG 252
G + +F G Y N + G Y + YGP+ G RS + G GYG G
Sbjct: 312 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSG 368
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 401 (146.2 bits), Expect = 6.4e-37, P = 6.4e-37
Identities = 83/198 (41%), Positives = 122/198 (61%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV- 64
GKLF+GG+SW T+ D+L++YF FG V + +IMKD T R+RGFGFI F +P E+V+
Sbjct: 203 GKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLK 262
Query: 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
+ H +DG+ ++ K A P+ NR + +TKKIFVGG++ + + K
Sbjct: 263 VPIHTLDGKKIDPKHATPK------NRPRQA-------NKTKKIFVGGVSQDTSAEEVKA 309
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF QFG + + V++ D T+R RGFGF+T+++E+ VD+V FH + K VE K+A PK
Sbjct: 310 YFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 369
Query: 185 E-LSPGPS----RNQLGT 197
E ++P R LGT
Sbjct: 370 EAVTPAAQLLQKRIMLGT 387
Score = 206 (77.6 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 44/96 (45%), Positives = 59/96 (61%)
Query: 91 RNNSSIHGSPG--PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRG 148
R+ S+ G G PA K+FVGGL+ + K+YF+ FG +TDV++M D TQR RG
Sbjct: 187 RSTPSLSGGSGSDPA-PGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRG 245
Query: 149 FGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
FGFIT+ V+KVL H L+GK ++ K A PK
Sbjct: 246 FGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPK 281
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 101/287 (35%), Positives = 151/287 (52%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 36 QLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAA 95
Query: 64 V-MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D + PG T KK+FVGG+ E
Sbjct: 96 MDARPHKVDGRAVEPKRAVSREDSS-----------KPGAHSTVKKMFVGGIKEDTDEEH 144
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++YF QFG I +V +M + N+ + RGF FIT+D +AVD+++++ +H +NG EV++A
Sbjct: 145 LREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKA 204
Query: 182 VPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSG 241
+ +E S N G G S + + GGYG G YG GR G
Sbjct: 205 LSREEMNRVSMNSRGGRGGG---GGSGGGNFGRGGGGGGGGGYG----GGYGGGG-GRGG 256
Query: 242 FTTIGPGYGMG--LNFEPNLSPSHGGGA-NLSPNLSYGRGLNPSFGG 285
G GYG G N + +GGG N N YG G GG
Sbjct: 257 ----GGGYGGGDGYNGYGGGNGGYGGGGPNYGGNRGYGSGGGGGGGG 299
Score = 207 (77.9 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 40/89 (44%), Positives = 59/89 (66%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY S VD
Sbjct: 34 PEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVD 93
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G+ VE KRAV +E S P
Sbjct: 94 AAMDARPHKVDGRAVEPKRAVSREDSSKP 122
Score = 61 (26.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 20/54 (37%), Positives = 21/54 (38%)
Query: 215 SYNPSSVGGYGLRIDGRYGPVTIG--RSGFTTIGPGYGMGLNFEPNLSPSHGGG 266
+YN S YG G YG G RSG G GYG G GGG
Sbjct: 345 NYNNQSSSNYGPMKGGNYGGGGGGGGRSGGGPYGGGYGGGSGGGGGYGGGSGGG 398
Score = 54 (24.1 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 25/82 (30%), Positives = 30/82 (36%)
Query: 210 NGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGL--NFEPNLSPSHGGGA 267
NG P+ G G G G G G+ G GYG G N+ N GGG
Sbjct: 273 NGGYGGGGPNYGGNRGYGSGGGGG----GGGGYGNQGGGYGGGGYDNYNNN-GGGGGGGG 327
Query: 268 NLSPNLSYGRGLNPSFGGNSNR 289
N G G FG +N+
Sbjct: 328 NFGGGNFGGGGDYNDFGNYNNQ 349
Score = 54 (24.1 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 26/96 (27%), Positives = 36/96 (37%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSG-FTTIGPGYG--MG 252
G YG ++ + G +YN + GG G G +G G G + G Y
Sbjct: 297 GGGGYG-NQGGGYGGGGYDNYNNNGGGGGG---GGNFGGGNFGGGGDYNDFG-NYNNQSS 351
Query: 253 LNFEPNLSPSHGGGAN---LSPNLSYGRGLNPSFGG 285
N+ P ++GGG S YG G GG
Sbjct: 352 SNYGPMKGGNYGGGGGGGGRSGGGPYGGGYGGGSGG 387
Score = 44 (20.5 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 23/68 (33%), Positives = 24/68 (35%)
Query: 219 SSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRG 278
+S GG G G G GR G G GYG G GGG G G
Sbjct: 216 NSRGGRGG--GGGSGGGNFGRGGGGGGGGGYGGGYG--------GGGGRGGGGGYGGGDG 265
Query: 279 LNPSFGGN 286
N GGN
Sbjct: 266 YNGYGGGN 273
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 103/292 (35%), Positives = 155/292 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 93 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 182 VPKE--LSPGPSRNQLGTHNYGLSRVSSFLNG---YTQSYNPSSVGGYGLR---IDGRYG 233
+ K+ S G R + G + R +F G + + N GGYG G YG
Sbjct: 202 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Query: 234 PVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGG 285
G +GF G YG G P S S GG P YG +GG
Sbjct: 262 GGDGGYNGFGGDGGNYGGG----PGYS-SRGGYGGGGPG-GYGNQ-GGGYGG 306
Score = 214 (80.4 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 50/140 (35%), Positives = 78/140 (55%)
Query: 82 PRDDQNIQNRNNSSI-HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD 140
P+ D + R + H P + +K+F+GGL+ T+ +++F+++G +TD VVM D
Sbjct: 10 PQPDSGRRRRRRGAQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNY 200
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P G H
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-----GAH-- 122
Query: 201 GLSRVSSFLNGY---TQSYN 217
L+ F+ G T+ YN
Sbjct: 123 -LTVKKIFVGGIKEDTEEYN 141
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 103/295 (34%), Positives = 158/295 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 93 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 182 VPKE--LSPGPSRNQLGTHNYGLSRVSSFLNG---YTQSYNPSSVGGYGLR---IDGRYG 233
+ K+ S G R + G + R +F G + + N GGYG G YG
Sbjct: 202 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Query: 234 PVTIGRSG-FTTIGPGYGMGL-NFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGN 286
G G + G G N+ P S GG ++ SP YG G S GG+
Sbjct: 262 GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSP---YGGGYG-SGGGS 312
Score = 213 (80.0 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 50/140 (35%), Positives = 77/140 (55%)
Query: 82 PRDDQNIQNRNNSSI-HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD 140
P+ D + R H P + +K+F+GGL+ T+ +++F+++G +TD VVM D
Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNY 200
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P G H
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-----GAH-- 122
Query: 201 GLSRVSSFLNGY---TQSYN 217
L+ F+ G T+ YN
Sbjct: 123 -LTVKKIFVGGIKEDTEEYN 141
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 99/285 (34%), Positives = 153/285 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 11 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 70
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 71 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 119
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 120 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
Query: 182 VPKE--LSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
+ K+ S G R + G + R +F G + GG G G G R
Sbjct: 180 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFXRGGNFGGKGXYGGGGGG----XR 235
Query: 240 SGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
S + G G G G N ++GGG+ S YG G P +G
Sbjct: 236 SSY---GGGDG-GYNGFGGDGGNYGGGSGSSSRGGYGGG-GPGYG 275
Score = 209 (78.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 47/124 (37%), Positives = 72/124 (58%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++G +TD VVM D T+R RGFGF+TY
Sbjct: 4 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 63
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGY---T 213
E VD + H+++G++VE KRAV +E S P G H L+ F+ G T
Sbjct: 64 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-----GAH---LTVKKIFVGGIKEDT 115
Query: 214 QSYN 217
+ YN
Sbjct: 116 EEYN 119
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 102/275 (37%), Positives = 141/275 (51%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GG+SWDT++ L+DYF FGEV + I D TGR+RGFGFI+F +P E+V+ Q
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
K H +DGR ++ KKA+ ++ P KKIFVGGL TE ++Y
Sbjct: 61 KEHRLDGRLIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEEKIREY 103
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F +FG I + + D T + RGF FIT+ E+ V KVL K FH ++G E+K A PKE
Sbjct: 104 FGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKE 163
Query: 186 L------SPGPSRNQLGTHNYGL---SRVSSFLNGYTQSYNPSSVG-GYGLRID-GRYGP 234
+ S G R G G ++ ++ GY +N GYG + G YG
Sbjct: 164 VYQQQQFSSGGGRGSYGGRGRGGRGGAQSQNWNQGYGNYWNQGYGNQGYGYQQGYGGYGG 223
Query: 235 VTIGRSGFTTIGPGYGMGL-NFEPNLSPSHGGGAN 268
G+ GPGY + +P GG N
Sbjct: 224 YDYSGYGYYGYGPGYDYSQGSANYGKTPRRGGHQN 258
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 98/284 (34%), Positives = 154/284 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+ K E++ S R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYG-- 238
Query: 236 TIGRSG-FTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRG 278
G G + G NF P + + GG + P YG G
Sbjct: 239 --GSGGSYNDFGNYNNQSSNFGP-MKGGNFGGRSSGP---YGGG 276
Score = 213 (80.0 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 76 (31.8 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 29/91 (31%), Positives = 38/91 (41%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPG 248
G N G +G SR G SYN G Y + +GP+ G G + GP
Sbjct: 217 GRGGNFSGRGGFGGSRGGGGYGGSGGSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPY 273
Query: 249 YGMGLNF-EPNLSPSHGGGANLSPNLSYGRG 278
G G F +P +GG ++ S SYG G
Sbjct: 274 GGGGQYFAKPRNQGGYGGSSSSS---SYGSG 301
Score = 47 (21.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 19/49 (38%), Positives = 20/49 (40%)
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGN 286
GRSG G G G G N G G N S GRG FGG+
Sbjct: 195 GRSGSGNFGGGRGGGFGGNDNF----GRGGNFS-----GRG---GFGGS 231
Score = 41 (19.5 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 266 GANLSPNLSYGRGLNPSFGGNSN 288
G + S N GRG FGGN N
Sbjct: 195 GRSGSGNFGGGRG--GGFGGNDN 215
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 103/295 (34%), Positives = 164/295 (55%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 81 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 129
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A+ +
Sbjct: 130 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 189
Query: 185 -ELSP-GPSRN-QLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRIDGR-YGPVTIG 238
E+ SR+ + G +G SR +F G ++ S GYG GR +G G
Sbjct: 190 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS-DGYG---SGRGFGD---G 242
Query: 239 RSGFTTIGPG--YGMGLNFEP----NLSPSHGGGANLSPNLSYGRGLNPSFGGNS 287
+G+ GPG YG G N+ N PS+ G S N R + +GG +
Sbjct: 243 YNGYGG-GPGGNYGSG-NYNDFGNYNQQPSNYGPMK-SGNFGGSRNMGGPYGGGN 294
Score = 195 (73.7 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKP 104
Score = 72 (30.4 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 29/88 (32%), Positives = 37/88 (42%)
Query: 188 PGPSRN-QLGTHNYGLSR-VSSFLNGYTQ----SY---NPSSVGGYGLRIDGRYGPVTIG 238
PGP N + G+ YG R NGY +Y N + G Y + YGP+ G
Sbjct: 220 PGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGNYGSGNYNDFGNYNQQ-PSNYGPMKSG 278
Query: 239 R-SGFTTIGPGYGMGLNFEPNLSPSHGG 265
G +G YG G N+ P S GG
Sbjct: 279 NFGGSRNMGGPYGGG-NYGPGGSGGSGG 305
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 94/270 (34%), Positives = 151/270 (55%)
Query: 1 MEME-LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAV 59
+E E L K+F+GG++ +T +D +R+++ FGE+ + ++M+D T R+RGFGF+ F+
Sbjct: 17 LEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 76
Query: 60 AERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVT 118
+ + Q+ H+IDG+TV+ K+AVPRDD+N R+ S++ TK+++V G+ T
Sbjct: 77 VDAAMKQRPHIIDGKTVDPKRAVPRDDKN---RSESNVS-------TKRLYVSGVREDHT 126
Query: 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
E +YF ++G +T ++ D TQ+PRGFGF+T+D ++VD+ +L+ H +NG +V
Sbjct: 127 EDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDV 186
Query: 179 KRAVPK-ELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG-RYGPVT 236
++ + K E+S T G SR +G YN GG G R GP
Sbjct: 187 RKGLSKDEMSKAQMNRDRETRG-GRSR-----DGQRGGYNGGGGGGGGWGGPAQRGGPGA 240
Query: 237 IGRSGFTTIGPGYGMGLNFEPNLSPSHGGG 266
G G G GYG G ++ GGG
Sbjct: 241 YGGPGGGGQG-GYG-G-DYGGGWGQQGGGG 267
Score = 216 (81.1 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 85 DQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQ 144
D I+ N S S P +KIFVGGL S T+ ++++ QFG ITD++VM D T+
Sbjct: 3 DVEIKAENGSG-DASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTK 61
Query: 145 RPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSR 204
R RGFGF+T+ + VD + + H ++GK V+ KRAVP++ S + + T +S
Sbjct: 62 RSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRD-DKNRSESNVSTKRLYVSG 120
Query: 205 V 205
V
Sbjct: 121 V 121
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 102/295 (34%), Positives = 158/295 (53%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G + + ++ D + + RGFGF T+D + VDK++L+ +H +NG EV++A+ +
Sbjct: 131 YFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Query: 185 -ELSP-GPSRNQLG-------TH----NYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGR 231
E+ SR+ G +H N+G S+F G SY S G+G +G
Sbjct: 191 QEMQEVQSSRSGRGGNFGFGDSHGGGGNFGPGPGSNFRGG---SYGYGSGRGFGDGYNG- 246
Query: 232 YGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGN 286
YG +G F I PGYG G P +G YG G + GGN
Sbjct: 247 YGG-GLGGGNFGGI-PGYGGGRGGYGGGGPGYGNQGG-----GYGGGYDNYGGGN 294
Score = 195 (73.7 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 65 (27.9 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 23/71 (32%), Positives = 28/71 (39%)
Query: 222 GGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRG 278
GGYG D YG G + G N+ P S S GG N+ P +YG G
Sbjct: 281 GGYGGGYDN-YGGGNYGSGNYNDFGNYNQQPSNYGPMKSGSFGGSRNMEGPYGGGNYGPG 339
Query: 279 LNPSFGGNSNR 289
+ GG R
Sbjct: 340 GSGGSGGYGGR 350
Score = 41 (19.5 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SG++ +G+ +P
Sbjct: 263 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 310
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 105/297 (35%), Positives = 154/297 (51%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+ + T ++ L+ +F+ +G +++ V+MKD T R+RGFGFI ++ ++ +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+ H IDGR VE K+AVPR D + N A KK+FVG L E + Y
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDIDSPNAG----------ATVKKLFVGALKDDHDEQSIRDY 141
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F FG I D+ ++ D T + RGF F+ +D + VDKV+L+ H+LNGKMV+VK+A+PK+
Sbjct: 142 FQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQ 201
Query: 186 LSP--------GP------SRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGR 231
GP +R +G NYG N ++ ++ GG +
Sbjct: 202 NDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWG-NNRGG-----NDN 255
Query: 232 YGPVTIGRSGFTTIGPGYGMGLNFEPNLSP-SHG-GGANLSPNLSYGRGLNPSFGGN 286
+G + G G G GYG G N N +P +G GG N G G N + GGN
Sbjct: 256 WGNNSFGGGGGG--GGGYGGGNNSWGNNNPWDNGNGGGNFG-----GGGNNWNNGGN 305
Score = 202 (76.2 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 38/90 (42%), Positives = 58/90 (64%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P +K+F+GGL T+ + K +F+++G I DVVVM D T+R RGFGFITY +D
Sbjct: 27 PEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMID 86
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPS 191
+ H+++G++VE KRAVP++ P+
Sbjct: 87 EAQKSRPHKIDGRVVEPKRAVPRQDIDSPN 116
Score = 44 (20.5 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 230 GRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGA--NLSPNLSYGRGLNPSFGGNS 287
GR GP GR+G G G N +GGG N N RG N ++G NS
Sbjct: 210 GRGGPG--GRAGGNRGNMGGG-------NYGNQNGGGNWNNGGNNWGNNRGGNDNWGNNS 260
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 105/301 (34%), Positives = 157/301 (52%)
Query: 2 EME-LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
EME L KLF+GG++ T D LR YF+ FG + + V++++ R+R FGF+ ++ A
Sbjct: 3 EMEKLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEA 62
Query: 61 ERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVT 118
+ + + H++DG+ VE K+AV R+D G P A+ KKIFVGGL +
Sbjct: 63 DAAMAARPHVVDGKNVEVKRAVAREDA-----------GRPEALAKVKKIFVGGLKDDIE 111
Query: 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
E D ++F QFG+I V+ D +T + RGFGF+ ++ ++ DK ++ FH +NG VEV
Sbjct: 112 EKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEV 171
Query: 179 KRAVPKE--LSPGPSRNQLGTHN-YGLSRVSSFLNGYTQS----YNPSSVGGYGLRIDGR 231
K+A+ K+ + G +R G G+ R + G Y GGYG DG
Sbjct: 172 KKALTKQEIQAAGGARGGRGRGGGRGMGRNQNGFGGGRGGGYGGYGGGYGGGYGGN-DGG 230
Query: 232 YGPVTIGRSGFTT-IGPGYGMGLNFEPNLSPSHGGGANLSP-NLSYGR---GLNPSFGGN 286
YG + G G+ G GYG G + +GGG + S YG+ G P GGN
Sbjct: 231 YGG-SYGSGGYGGGYGGGYGGGYGEQMG---GYGGGNDYSDFGSGYGQQSSGYGPMKGGN 286
Query: 287 S 287
+
Sbjct: 287 T 287
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 96/284 (33%), Positives = 150/284 (52%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 31 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 90
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 91 MSARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 139
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 140 LREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 199
Query: 182 VPK-ELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRS 240
+ K E+ S+ G + +F G N G +G R G YG G
Sbjct: 200 LSKQEMQTASSQRGRGGGSGNFMGRGNFGGG---GGNFGRGGNFGGR--GGYGGGGGGGG 254
Query: 241 GFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
+ G G G F ++GGG YG G P +G
Sbjct: 255 SRGSFGGGDGYN-GFGDVKGGNYGGGPGYGSRGGYGGGGGPGYG 297
Score = 218 (81.8 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 50/137 (36%), Positives = 78/137 (56%)
Query: 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNT 143
+D + R +S H P + +K+F+GGL+ T+ +++F+++G +TD VVM D T
Sbjct: 11 EDYKRKGRRSSQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQT 70
Query: 144 QRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLS 203
+R RGFGF+TY E VD + H+++G++VE KRAV +E S P G H L+
Sbjct: 71 KRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP-----GAH---LT 122
Query: 204 RVSSFLNGY---TQSYN 217
F+ G T+ YN
Sbjct: 123 VKKIFVGGIKEDTEEYN 139
Score = 46 (21.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 27/92 (29%), Positives = 37/92 (40%)
Query: 199 NYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPN 258
NYG GY P GYG G YG G G+ G +G G N+ +
Sbjct: 275 NYGGGPGYGSRGGYGGGGGP----GYG-NPGGGYGGGGGGYDGYNE-GGNFGGG-NYGGS 327
Query: 259 LSPSHGGGANLSPNLSYG--RGLNPSFGGNSN 288
+ + G + +YG +G SFGG S+
Sbjct: 328 GNYNDFGNYSGQQQSNYGPMKG-GGSFGGRSS 358
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 100/288 (34%), Positives = 152/288 (52%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ED LR +F+ +G++ + V+M+D A R+RGFGF+ ++ + +
Sbjct: 11 QLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAA 70
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D N PG T KKIFVGG+ E
Sbjct: 71 MTARPHKVDGRVVEPKRAVSREDSN-----------KPGAHLTVKKIFVGGIKEDTEEYH 119
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++YF+ +G I + +M + +T + RGF F+T+D + VDK++ + +H +N EV++A
Sbjct: 120 IREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKA 179
Query: 182 VPKELSPGPSRNQL---GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLR-IDGRYGPVTI 237
+PK+ S + G N+ R +F G Y GG G G YG
Sbjct: 180 LPKQEMQSSSNQRYRGGGGGNF-TGRGGNFGRG---GYGGGRGGGDGYNGFGGNYGG--- 232
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGA-NLSPNLSYGRGLNPSFG 284
G G+ GYG NF S GGG N + +YG G +FG
Sbjct: 233 GPGGYGGGRGGYG---NFGGGGGSSGGGGGGNYNDFGNYG-GQQSNFG 276
Score = 202 (76.2 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 99 SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
S P + +K+F+GGL+ TE + +F+Q+G +TD VVM D +R RGFGF+TY S
Sbjct: 6 SKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVS 65
Query: 159 AVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
VD + H+++G++VE KRAV +E S P
Sbjct: 66 EVDAAMTARPHKVDGRVVEPKRAVSREDSNKP 97
Score = 46 (21.3 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 211 GYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYG 250
G ++ P +G R G YG G SG G GYG
Sbjct: 270 GQQSNFGPMKGNNFGGRNSGPYGGGGYG-SGGGGGGGGYG 308
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 99/290 (34%), Positives = 156/290 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIG 238
+ K E++ S R + G+ N+G R F G ++ G G GR G + G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGF--GGNDNF------GRGGNFSGR-G-IGDG 230
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
+GF G +G G ++ G N S N +G N FGG S+
Sbjct: 231 YNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 273
Score = 213 (80.0 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 64 (27.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 230 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 283
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 284 AKPRNQGGYGGSSSSS---SYGSG 304
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 100/292 (34%), Positives = 157/292 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 7 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 66
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 67 MSARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 115
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 116 LREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 175
Query: 182 VPK-ELSPGPS-RNQLGTHNY-GLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIG 238
+ K E+ S R + G+ N+ G + + N GGYG G + G
Sbjct: 176 LSKQEMQTASSQRGKGGSGNFMGRGNFGGGGGNFGRGGNFGGRGGYGGGGGGGGSRGSFG 235
Query: 239 RS-GFTTIGPG-YGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G+ G G YG N+ + S +N P G G SFGG S+
Sbjct: 236 GGDGYNGFGDGNYGGSGNYNDFGNYSGQQQSNYGP--MKGGG---SFGGRSS 282
Score = 205 (77.2 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 46/119 (38%), Positives = 71/119 (59%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ +++F+++G +TD VVM D T+R RGFGF+TY E VD
Sbjct: 5 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 64
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGY---TQSYN 217
+ H+++G++VE KRAV +E S P G H L+ F+ G T+ YN
Sbjct: 65 AAMSARPHKVDGRVVEPKRAVSREDSVKP-----GAH---LTVKKIFVGGIKEDTEEYN 115
Score = 37 (18.1 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSFYGDSTWRP 428
G G YG + + + G YG + GSF G S+ P
Sbjct: 242 GFGDGNYGGSG--NYNDFGNYSGQQQSNYGPMKGGGSFGGRSSGSP 285
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 101/297 (34%), Positives = 154/297 (51%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 19 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 78
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 79 MSARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 127
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 128 LREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 187
Query: 182 VPK-ELSPGPSRNQLG--THNY-GLSRVSSFLNGYTQSY-NPSSV-----GGY-GLRIDG 230
+ K E+ S+ G + N+ G G Y NP GGY G G
Sbjct: 188 LSKQEMQTASSQRGRGGGSGNFMGRGNFGGGGGGGGPGYGNPGGGYGGGGGGYDGYNEGG 247
Query: 231 RYGPVTIGRSG-FTTIGPGYGMGLNFEPNLSPSHGGGA--NLSPNLSYGRGLNPSFG 284
+G G SG + G G + N P GGG+ S YG G G
Sbjct: 248 NFGGGNYGGSGNYNDFGNYSGQQ---QSNYGPMKGGGSFGGRSSGSPYGGGYGSGSG 301
Score = 207 (77.9 bits), Expect = 8.6e-15, P = 8.6e-15
Identities = 47/124 (37%), Positives = 72/124 (58%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++G +TD VVM D T+R RGFGF+TY
Sbjct: 12 HEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 71
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGY---T 213
E VD + H+++G++VE KRAV +E S P G H L+ F+ G T
Sbjct: 72 VEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP-----GAH---LTVKKIFVGGIKEDT 123
Query: 214 QSYN 217
+ YN
Sbjct: 124 EEYN 127
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 99/271 (36%), Positives = 138/271 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F + +
Sbjct: 41 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVD 100
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
RV+ QK H +DGR ++ K+A+ +I P KKIFVGGL TE
Sbjct: 101 RVLQQKEHRLDGRQIDPKRAM-------------AIKKEP----VKKIFVGGLNPETTEE 143
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG I + + D T + RGF FIT+ E AV K+L K +H + G E+K
Sbjct: 144 KIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSKCEIKI 203
Query: 181 AVPKELSP----GPSRNQLGTHNYGLSRVSSFLN-GYTQSYNPSSVG-GYGLRIDGRYGP 234
A PKE+ G G G N GY +N G GYG YG
Sbjct: 204 AQPKEIYQQQQFGARGGGFGGRGRGRGGPGQSWNQGYNNYWNQGYGGQGYGYGGQQGYGG 263
Query: 235 VT-IGRSGFTTIGPGYGMGLNFEPNLSPSHG 264
G +++ GYG G ++ + S+G
Sbjct: 264 YGGYGNYDYSSGYYGYGSGYDYTDQGAASYG 294
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 361 (132.1 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 102/299 (34%), Positives = 147/299 (49%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG++ T+E LR +F+AFG + + V++ + T R+R FGF+ +++ A+
Sbjct: 5 QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESD 121
+ H +DG TVE K+AV R+D PG A+ KK+FVGGL V E D
Sbjct: 65 MAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDVAEGD 113
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++F QFG + ++ D + + RGFGF+ + S +A DK + FH + G VEVK+A
Sbjct: 114 LIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 182 VPKE---LSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIG 238
VPKE G +R G G R G + GG G YG G
Sbjct: 174 VPKEDIHAGGGGARAARGGRGGGRGRGGGGGGGGRDQNGLAKGGGGGGGGYNSYG----G 229
Query: 239 RSGFTTIGPGYGMGLNFE-PNLSPSHGGGANLSPNLS-YGR-------GLNPSFGGNSN 288
G+ G G G G ++ + GG + S + S YG G S+GG SN
Sbjct: 230 YGGYGAYGGGGGGGGSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSWGGRSN 288
Score = 40 (19.1 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 402 STKGSYDVAYGDIYESGSF 420
S G Y YG Y GSF
Sbjct: 287 SNSGPYRGGYGGGYGGGSF 305
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 345 (126.5 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 91/266 (34%), Positives = 141/266 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ G + + V+M+D T +RGFGF+ + +
Sbjct: 34 QLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAA 93
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG KKIFVGG+ E +
Sbjct: 94 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLMVKKIFVGGIKEDTEEYN 142
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G T+ + ++ RGF F+T+D ++ VDK++++ H +NG EVKRA
Sbjct: 143 LRDYFEKYGK-TETIEGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRA 200
Query: 182 VPKELSP--GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
+ K+ P G R + G + + R +F G + Y GG G R G YG
Sbjct: 201 LSKQEMPCAGSQRGRGGGSSNFMGRGGNF--GGREGYGG---GGGGSR--GSYGGSGDRY 253
Query: 240 SGFTTIGPGYGMGLNFEPNLSPSHGG 265
GF G YG G ++ S GG
Sbjct: 254 HGFGGDGGNYGGGPSYSSRGSYGGGG 279
Score = 193 (73.0 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 42/121 (34%), Positives = 69/121 (57%)
Query: 71 DGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFG 130
DGR E K + ++ ++ H P + +K+F+GGL+ T+ +++F++ G
Sbjct: 7 DGRKKERKGKGRKKERRMEG------HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRG 60
Query: 131 IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE--LSP 188
+TD VVM D T+ RGFGF+T E VD + H+++G++VE KRAV +E + P
Sbjct: 61 TLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 120
Query: 189 G 189
G
Sbjct: 121 G 121
Score = 54 (24.1 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 262 SHGGGANLSPNLSYGRGLNPSFG 284
++GGG + S SYG G PSFG
Sbjct: 262 NYGGGPSYSSRGSYGGG-GPSFG 283
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 104/273 (38%), Positives = 143/273 (52%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D A E
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 124
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGL-ASTVTE 119
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL + TE
Sbjct: 125 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPESPTE 167
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
++YF +FG I + + D + RGF FIT+ EE V KVL K FH ++G E+K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
Query: 180 RAVPKELSPGPSRNQ--LGTHNYGL--SRVSSFLNGYTQSYNPSSVGGY---GLRIDGRY 232
A PKE+ G N G S G +QS+N G Y G Y
Sbjct: 228 VAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWN-QGYGNYWNQGYGYQQGY 286
Query: 233 GPVTIGRSGFTTIGP-GYGMGLNFEPNLSPSHG 264
GP G ++ G GYG G ++ S ++G
Sbjct: 287 GP-GYGGYDYSPYGYYGYGPGYDYSQG-STNYG 317
Score = 186 (70.5 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVV 136
A A P +QN I+ S K+FVGGL+ ++ D K YF +FG + D
Sbjct: 42 ATAAPPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT 99
Query: 137 VMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
+ D NT R RGFGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 100 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 151
Score = 44 (20.5 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 191 SRNQ-LGTH-NYGLSRVSSFLNGYT-QSYNPSSVGGYGLRIDGRYGPVTIGRS 240
S NQ G + N G + GY Y+P GYG D G G+S
Sbjct: 267 SWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKS 319
Score = 42 (19.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 264 GGGANLSPNLSYGRGLNPSFG 284
GGG + S N YG N +G
Sbjct: 261 GGGQSQSWNQGYGNYWNQGYG 281
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 104/307 (33%), Positives = 159/307 (51%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE-RVVM 65
KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A + +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 66 QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ G PG T KK+FVGG+ E +
Sbjct: 70 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV-- 182
YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H NG EV++A+
Sbjct: 119 YFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKALSR 177
Query: 183 -------------PKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPS-----SVGGY 224
P+ L G SR G N G S+F G + Y GY
Sbjct: 178 QEMQEVQNSRSGRPRTLLFGDSRG--GGGNSGPGPGSNFRGG-SDGYGSGRGFGDGYNGY 234
Query: 225 GLRI-DGRYG--P-VTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLN 280
G G +G P GR G+ GPGYG N +GGG + +YGR +
Sbjct: 235 GGGPRSGNFGGSPGYGGGRGGYGGGGPGYG-------NQGGGYGGGYDNYGGGNYGRNMG 287
Query: 281 PSFGGNS 287
+GG +
Sbjct: 288 GPYGGGN 294
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 96/275 (34%), Positives = 139/275 (50%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV- 64
GK+FIGG+SWDT++ L DY FGEVL+ I D TGR+RGFGF++F D +RV+
Sbjct: 30 GKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLE 89
Query: 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
+ +H +DG+ ++ K+A +I G P KK+FVGGL+ +TE ++
Sbjct: 90 LTEHKLDGKLIDPKRA-------------KAIKGKEPP---KKVFVGGLSPDITEEQLRE 133
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF +G I + + D T RGF F+T+ EE V K+L +H++ E+K A PK
Sbjct: 134 YFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLENRYHQIGSGKCEIKVAQPK 193
Query: 185 EL-SPGPSRNQ-LGTHNYGL----SRVSSFLNGYTQSYNPSSVGGYGLRIDGRY-GPVTI 237
E+ +R++ G G R F GY Y + GGYG + Y G
Sbjct: 194 EVYRQQQNRDRGFGGGRGGFRGRGGRGQGFNQGYNNYYGQNYGGGYGNGYNQGYNGYSGY 253
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPN 272
SG+ GYG G + S+G + S N
Sbjct: 254 DYSGYNYQNYGYGQGYDDYSGQQSSYGKASRDSGN 288
Score = 170 (64.9 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S I+ S K+F+GGL+ ++ D Y +FG + D + D T R RGFGF+
Sbjct: 18 SKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVL 77
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ E+VD+VL T H+L+GK+++ KRA
Sbjct: 78 FKDAESVDRVLELTEHKLDGKLIDPKRA 105
Score = 54 (24.1 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 238 GRSGFTTIGPGYGMGLN--FEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNS 287
GR GF G G G G N + ++GGG YG G N + G S
Sbjct: 209 GRGGFRGRG-GRGQGFNQGYNNYYGQNYGGG--------YGNGYNQGYNGYS 251
Score = 45 (20.9 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 246 GPGYGMGLNFEPN-LSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G GYG G N N S G N N YG+G + G S+
Sbjct: 236 GGGYGNGYNQGYNGYSGYDYSGYNYQ-NYGYGQGYDDYSGQQSS 278
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 105/296 (35%), Positives = 148/296 (50%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG++ T+E LR +F+AFG + + V++ + T R+R FGF+ +++ A+
Sbjct: 5 QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESD 121
+ H +DG TVE K+AV R+D PG A+ KK+FVGGL V E D
Sbjct: 65 MAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDVAEGD 113
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++F QFG + ++ D + + RGFGF+ + + +A DK + FH + G VEVK+A
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 182 VPKE--LSPG------PSRNQLGTHNYGLSRVSSFLN-GYTQSYNPSSVGGYGLRIDGRY 232
VPKE S G SR G G R + L+ G YN S GGYG G Y
Sbjct: 174 VPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYN--SYGGYGGGGGGGY 231
Query: 233 GPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G G + G YG G + S H + G G S+GG SN
Sbjct: 232 NAYGGGGGGSSYGGSDYGNGFGGFGSYS-QHQSSYGPMKSGGGGGGGGSSWGGRSN 286
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 99/293 (33%), Positives = 156/293 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T E+ LR +F+ +G + V+M+D T R+RG GF+++A +
Sbjct: 12 QLWKLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAA 71
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDF 122
+ + +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHHL 120
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + +GF F+T+D ++VDK++++ +H +NG EV++A+
Sbjct: 121 RDYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKAL 179
Query: 183 PK-ELSPGPS--RNQLGTHNYGLSRVSSFLN----GYTQSYNPSSVGGYG-LRIDGRYGP 234
K E++ S R+ G+ N+G R F G + N S GG+G + G YG
Sbjct: 180 SKQEMASASSTQRDLSGSGNFGGGRGGGFGGNDNFGGGRRRNFSGGGGFGGSQGGGGYGG 239
Query: 235 VTIGRSGFTTIGPGYGMGLNFEP--NLSPSHGGGANLSPNLSYGRGLNPSFGG 285
G +GF G +G G ++ N + S+ G N GR P GG
Sbjct: 240 SGDGYNGFGNDGSNFGGGGSYNDFGNYNNSNFGPMK-GENFG-GRSSGPYGGG 290
Score = 185 (70.2 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 39/89 (43%), Positives = 56/89 (62%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + K+F+GGL+ TE + +F+Q+G TD VVM D NT+R RG GF+ Y + E VD
Sbjct: 10 PEQLWKLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H ++G++VE KRAV +E S P
Sbjct: 70 AAMNARPH-VDGRVVEPKRAVSREDSQRP 97
Score = 56 (24.8 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 32/101 (31%), Positives = 41/101 (40%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNP-----SSVGGYGLRID-GRY-----GPVTI 237
G RN G +G S+ G YN S+ GG G D G Y GP+
Sbjct: 217 GRRRNFSGGGGFGGSQGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNSNFGPMKG 276
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRG 278
G + GP G G F L+ G G ++S + SYG G
Sbjct: 277 ENFGGRSSGPYGGGGQYFVKPLNQG-GYGRSVSSS-SYGSG 315
Score = 44 (20.5 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 268 NLSPNLSYGRGLNPSFGGNSN 288
+LS + ++G G FGGN N
Sbjct: 193 DLSGSGNFGGGRGGGFGGNDN 213
Score = 44 (20.5 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 21/69 (30%), Positives = 28/69 (40%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRY--GPVTIGRSGFTTIG 246
G S N G NY S + G +++ S G YG G+Y P+ G G +
Sbjct: 257 GGSYNDFG--NYNNSNFGP-MKG--ENFGGRSSGPYGG--GGQYFVKPLNQGGYGRSVSS 309
Query: 247 PGYGMGLNF 255
YG G F
Sbjct: 310 SSYGSGRRF 318
Score = 38 (18.4 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 265 GGANLSPNLSYGRGLNPSFGGNSNR 289
G N G G N +FGG R
Sbjct: 196 GSGNFGGGRGGGFGGNDNFGGGRRR 220
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 101/291 (34%), Positives = 152/291 (52%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAF-------GEVLEAVIMKDRATGRARGFGFIVFAD 56
+L KLFIGG+S++T +D LR++F+ + G + + V+M+D T R+RGFGF+ ++
Sbjct: 11 QLRKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 70
Query: 57 PAVAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLAS 115
V + + H +DGR VE K+AV R+D S+ PG T KKIFVGG+
Sbjct: 71 EEVDAAMCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKE 119
Query: 116 TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
E + + YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG
Sbjct: 120 DTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHN 179
Query: 176 VEVKRAVPKE--LSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
EVK+A+ K+ S G R G + +F G N G +G R G YG
Sbjct: 180 CEVKKALSKQEMQSAGSQRGCGGGSGNFMGHGGNFGGG---GGNFGRGGNFGGR--GGYG 234
Query: 234 PVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
G G + G G G G N ++GGG S YG G P +G
Sbjct: 235 GGGGGSRG--SYGGGDG-GYNGFGGDGGNYGGGPGYSSRGGYGGG-GPGYG 281
Score = 186 (70.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFD-------QFGIITDVVVMYDHNTQRPRGF 149
H P + +K+F+GGL+ T+ +++F+ ++G +TD VVM D T+R RGF
Sbjct: 4 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGF 63
Query: 150 GFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE--LSPG 189
GF+TY EE VD + H+++G++VE KRAV +E + PG
Sbjct: 64 GFVTYSCEE-VDAAMCARPHKVDGRVVEPKRAVSREDSVKPG 104
Score = 55 (24.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 20/63 (31%), Positives = 26/63 (41%)
Query: 196 GTHNY-GLSRVSSFLNG-YTQSYNPSSVGGYGLRIDGRYGPVTIG----RSGFTTIGPGY 249
G Y G + +F G Y N + G Y + YGP+ G RS + G GY
Sbjct: 290 GAGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 349
Query: 250 GMG 252
G G
Sbjct: 350 GSG 352
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 101/296 (34%), Positives = 157/296 (53%)
Query: 2 EME-LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
E+E L KLFIGG+S++T ++ LR +F+ +G + + V+M D T R+RGFGF+ +
Sbjct: 18 ELEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEV 76
Query: 61 ERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVT 118
+ + + +DGR VE K+AV R+D PG T KKIFVGG+
Sbjct: 77 DAAMNARPQKMDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTE 125
Query: 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
E + YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H NG EV
Sbjct: 126 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEV 185
Query: 179 KRAVPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGY-GLRIDGRY 232
++A+ K E++ S R + G+ N+G R F + + + N S GG+ G R G Y
Sbjct: 186 RKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFAGSRGGGGY 245
Query: 233 GPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G ++ G N S N +G N FGG S+
Sbjct: 246 AGSGDGYNGFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 294
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 97/290 (33%), Positives = 148/290 (51%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T + LR +F+ +G + + V+M+D T +RGFGF+ +A V E
Sbjct: 12 QLRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYA--TVKEVD 69
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T +KIFVGG+ E
Sbjct: 70 AARSHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVRKIFVGGIKEDTEEHHL 118
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF Q+G I + +M D + + RGF +T+D + DK++++ ++ +NG EV++A+
Sbjct: 119 RDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDK-DKIVIQKYYIVNGHNCEVRKAL 177
Query: 183 PKE--LSPGPSRNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGY-GLRIDGRYGPVTI 237
K+ S SR + G+ N+G R F + + N S GG+ G + G YG
Sbjct: 178 SKQEMASASSSRGRSGSGNFGGGRGGGFGGNDNFGHGGNFSGQGGFSGSQSGGGYGGSGD 237
Query: 238 GRSGFTTIGPGYGMGL---------NFEPNLSPSHGGGANLSPNLSYGRG 278
G +GF G +G G N N P GG + SYG G
Sbjct: 238 GYNGFGNDGGNFGGGKIYNDFGNYNNQSSNFGPMKGGNFGGGSSSSYGSG 287
Score = 189 (71.6 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 37/89 (41%), Positives = 58/89 (65%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T + +F+Q+G++ D VVM D NT+ RGFGF+TY + + VD
Sbjct: 10 PEQLRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
H+++G++VE KRAV +E S P
Sbjct: 70 AA---RSHKVDGRVVEPKRAVSREDSQRP 95
Score = 45 (20.9 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 260 SPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
S S G + S N GRG FGGN N
Sbjct: 184 SASSSRGRSGSGNFGGGRG--GGFGGNDN 210
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 82/186 (44%), Positives = 112/186 (60%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D A E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF +FG I + + D + RGF FIT+ EE V KVL K FH ++G E+K
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKV 228
Query: 181 AVPKEL 186
A PKE+
Sbjct: 229 AQPKEV 234
Score = 186 (70.5 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVV 136
A A P +QN I+ S K+FVGGL+ ++ D K YF +FG + D
Sbjct: 43 ATAAPPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT 100
Query: 137 VMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
+ D NT R RGFGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 82/186 (44%), Positives = 112/186 (60%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D A E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF +FG I + + D + RGF FIT+ EE V KVL K FH ++G E+K
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKV 228
Query: 181 AVPKEL 186
A PKE+
Sbjct: 229 AQPKEV 234
Score = 186 (70.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVV 136
A A P +QN I+ S K+FVGGL+ ++ D K YF +FG + D
Sbjct: 43 ATAAPPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT 100
Query: 137 VMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
+ D NT R RGFGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 109/303 (35%), Positives = 154/303 (50%)
Query: 1 MEME---LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP 57
+EME L KLFIGG++ T+E LR +F+AFG + + V++ + T R+R FGF+ +++
Sbjct: 4 VEMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNV 63
Query: 58 AVAERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLAS 115
A+ + H +DG TVE K+AV R+D PG A+ KK+FVGGL
Sbjct: 64 EEADAAMAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKG 112
Query: 116 TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
V E D ++F QFG + ++ D + + RGFGF+ + + +A DK + FH + G
Sbjct: 113 DVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHR 172
Query: 176 VEVKRAVPKE-LSPG-------PSRNQLGTHNYGLSRVSSFLN-GYTQSYNPSSVGGYGL 226
VEVK+AVPKE + G SR G G R + L+ G YN S GGYG
Sbjct: 173 VEVKKAVPKEDIHSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYN--SYGGYGG 230
Query: 227 RIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLN-PSFGG 285
G Y G G + G YG G + S H ++ P S G G S+GG
Sbjct: 231 --GGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYS-QHQ--SSYGPMKSGGGGGGGSSWGG 285
Query: 286 NSN 288
SN
Sbjct: 286 RSN 288
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 78/232 (33%), Positives = 128/232 (55%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFI G+S++T ++ LR +F+ +G + + V+M+D T R RGFGF+ + +
Sbjct: 5 QLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAA 64
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVG + E
Sbjct: 65 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGSIKEDTEEHH 113
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 114 LREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 173
Query: 182 VPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
+ K+ S +Q G + G N + ++ P G +G R G YG
Sbjct: 174 LSKQEMASASSSQRGRNGSGNYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYG 225
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 81/186 (43%), Positives = 112/186 (60%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVE 125
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF +FG I + + D + + RGF FIT+ EE V KVL K FH ++G E+K
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKV 228
Query: 181 AVPKEL 186
A PKE+
Sbjct: 229 AQPKEV 234
Score = 179 (68.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 87 NIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRP 146
N I+ S K+FVGGL+ ++ D K YF +FG + D + D NT R
Sbjct: 51 NQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRS 110
Query: 147 RGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
RGFGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 111 RGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 101/300 (33%), Positives = 153/300 (51%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
ME +L KLF+GG++ T +D LR++F+ +G++ + V+++++ R+R FGF+ ++ P A
Sbjct: 5 MENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEA 64
Query: 61 ERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVT 118
+ + + H++DG VE K+AV R+D G P A+ KKIF+GGL +
Sbjct: 65 DSAMSARPHILDGNNVELKRAVAREDA-----------GKPEALAKVKKIFIGGLKDDIE 113
Query: 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
E + F QFG + V+ D T + RGFGF+ ++ ++ DK ++ FH +NG VEV
Sbjct: 114 EDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEV 173
Query: 179 KRAVPK-EL----SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
K+A+ K E+ S G R G G+ R + G Y GGYG DG YG
Sbjct: 174 KKALTKQEMQAAGSRGGGRGGRGGGR-GMGRPQNGYGGRGGGYGNYGGGGYGGN-DG-YG 230
Query: 234 PVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSP-NLSYGR---GLNPSFGGNSNR 289
G G G GYG G + +GGG + YG+ G P G S R
Sbjct: 231 G---GYGG--GYGGGYGGGYGDQME---GYGGGNGYNDFGSGYGQQSSGYGPMKGNYSGR 282
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 107/303 (35%), Positives = 152/303 (50%)
Query: 1 MEME---LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP 57
+EME L KLFIGG++ T+E LR +F+AFG + + V++ + T R+R FGF+ +++
Sbjct: 4 VEMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNV 63
Query: 58 AVAERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLAS 115
A+ + H +DG TVE K+AV R+D PG A+ KK+FVGGL
Sbjct: 64 EEADAAMAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKG 112
Query: 116 TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
V E D ++F QFG + ++ D + + RGFGF+ + + +A DK + FH + G
Sbjct: 113 DVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHR 172
Query: 176 VEVKRAVPKE-LSPG-------PSRNQLGTHNYGLSRVSSFLN-GYTQSYNPSSVGGYGL 226
VEVK+AVPKE + G SR G G R + L+ G YN S GGYG
Sbjct: 173 VEVKKAVPKEDIHSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYN--SYGGYGG 230
Query: 227 RIDGRYGPVTIGRSGFTTIGPG-YGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGG 285
G Y G G ++ G YG G + S H + G G S+GG
Sbjct: 231 G-GGGYNAYGGGGGGGSSYGGSDYGNGFGGFGSYS-QHQSSYGPMKSGGGGGGGGSSWGG 288
Query: 286 NSN 288
SN
Sbjct: 289 RSN 291
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/186 (43%), Positives = 112/186 (60%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D + E
Sbjct: 84 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 143
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 144 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 186
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V KVL K FH ++G E+K
Sbjct: 187 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 246
Query: 181 AVPKEL 186
A PKE+
Sbjct: 247 AQPKEV 252
Score = 188 (71.2 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 37/100 (37%), Positives = 57/100 (57%)
Query: 89 QNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRG 148
QN I+ S K+FVGGL+ ++ D K YF +FG + D + D NT R RG
Sbjct: 71 QNGEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 130
Query: 149 FGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
FGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 131 FGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 170
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/186 (43%), Positives = 112/186 (60%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V KVL K FH ++G E+K
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 233
Query: 181 AVPKEL 186
A PKE+
Sbjct: 234 AQPKEV 239
Score = 188 (71.2 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 39/109 (35%), Positives = 60/109 (55%)
Query: 80 AVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
A P +QN I+ S K+FVGGL+ ++ D K YF +FG + D +
Sbjct: 51 AAPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM 108
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
D NT R RGFGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 81/186 (43%), Positives = 112/186 (60%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V KVL K FH ++G E+K
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 233
Query: 181 AVPKEL 186
A PKE+
Sbjct: 234 AQPKEV 239
Score = 184 (69.8 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 38/107 (35%), Positives = 59/107 (55%)
Query: 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH 141
P +QN I+ S K+FVGGL+ ++ D K YF +FG + D + D
Sbjct: 53 PSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP 110
Query: 142 NTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
NT R RGFGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 111 NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 91/259 (35%), Positives = 131/259 (50%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV- 64
GK+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A E+V+
Sbjct: 66 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLE 125
Query: 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
+++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E K+
Sbjct: 126 LKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKE 169
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF FG I ++ + D T RGF FITY EE V K+L +H++ E+K A PK
Sbjct: 170 YFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 229
Query: 185 EL-------SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTI 237
E+ G N G G R + Q +N GYG + Y +
Sbjct: 230 EVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYSDQSY 288
Query: 238 -GRSGFTTIG---PGYGMG 252
G G+ G P YG G
Sbjct: 289 SGYGGYDYSGYNYPNYGYG 307
Score = 160 (61.4 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 54 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 113
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ +V+KVL H+L+GK+++ KRA
Sbjct: 114 FKDAASVEKVLELKEHKLDGKLIDPKRA 141
Score = 37 (18.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 264 GGGANLSPNLSYGRGLNPSFGGNSNR 289
GG +N S GRG G N N+
Sbjct: 241 GGKSNASGGRGGGRGRGRGQGQNWNQ 266
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 91/259 (35%), Positives = 131/259 (50%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV- 64
GK+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A E+V+
Sbjct: 30 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLE 89
Query: 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
+++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E K+
Sbjct: 90 LKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKE 133
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF FG I ++ + D T RGF FITY EE V K+L +H++ E+K A PK
Sbjct: 134 YFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 193
Query: 185 EL-------SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTI 237
E+ G N G G R + Q +N GYG + Y +
Sbjct: 194 EVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYSDQSY 252
Query: 238 -GRSGFTTIG---PGYGMG 252
G G+ G P YG G
Sbjct: 253 SGYGGYDYSGYNYPNYGYG 271
Score = 160 (61.4 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 18 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 77
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ +V+KVL H+L+GK+++ KRA
Sbjct: 78 FKDAASVEKVLELKEHKLDGKLIDPKRA 105
Score = 37 (18.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 264 GGGANLSPNLSYGRGLNPSFGGNSNR 289
GG +N S GRG G N N+
Sbjct: 205 GGKSNASGGRGGGRGRGRGQGQNWNQ 230
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 77/210 (36%), Positives = 125/210 (59%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 31 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 90
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 91 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 139
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 140 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 199
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSF 208
+ K E++ S R + G+ N+G R F
Sbjct: 200 LSKQEMASASSSQRGRSGSGNFGGGRGGGF 229
Score = 213 (80.0 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 29 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 88
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 89 AAMNARPHKVDGRVVEPKRAVSREDSQRP 117
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 79/181 (43%), Positives = 109/181 (60%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GG+SWDT++ L+DYF FGEV + I D TGR+RGFGFI+F +P E+V+ Q
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
K H +DGR ++ KKA+ ++ P KKIFVGGL TE ++Y
Sbjct: 61 KEHRLDGRLIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEEKIREY 103
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F +FG I + + D T + RGF FIT+ E+ V KVL K FH ++G E+K A PKE
Sbjct: 104 FGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKE 163
Query: 186 L 186
+
Sbjct: 164 V 164
Score = 181 (68.8 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 34/82 (41%), Positives = 53/82 (64%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGL+ ++ D K YF +FG +TD + D NT R RGFGFI + +V+KVL +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 167 TFHELNGKMVEVKRAVPKELSP 188
H L+G++++ K+A+ + P
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDP 82
Score = 146 (56.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 33/97 (34%), Positives = 56/97 (57%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAV-IMKDRATGRARGFGFIVFADPAVAERVVM 65
K+F+GG++ + E+++R+YF FGE+ EA+ + D T + RGF FI F + ++V+
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 66 QK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+K H + G E K A P++ Q ++ GS G
Sbjct: 144 KKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGGRGSYG 180
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 99/297 (33%), Positives = 150/297 (50%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA-----DPA 58
+L KLFIGG S++T ++ LR +F+ G + + V+M+D T R+RGFGF+ + DPA
Sbjct: 12 QLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPA 71
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTV 117
+ R H +DGR VE K+ ++D PG T KKIF GG+
Sbjct: 72 MHAR----PHKVDGRVVEPKRTSSKEDSQ-----------RPGAHLTVKKIFAGGIKEDT 116
Query: 118 TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVE 177
E + YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG E
Sbjct: 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWE 176
Query: 178 VKRAVPKELSPGPS---RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGR 231
V++A+ K+ S R Q G+ N+G R F + + N GG+G G
Sbjct: 177 VRKALSKQEMASASCSQRGQSGSGNFGGFRGCGFGGNDNFGHGGNFRGRGGFGGSGGGGG 236
Query: 232 YGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
YG G +GF G +G G G N S N+ +G N FGG S+
Sbjct: 237 YGGRGDGYNGFDNDGSNFGGGRRHN-----DFGNYNNQSSNVGPMKGRN--FGGRSS 286
Score = 206 (77.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 42/93 (45%), Positives = 60/93 (64%)
Query: 99 SP-GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSE 157
SP GP + +K+F+GG + T+ + +F Q GI+TD VVM D NT+R RGFGF+TY +
Sbjct: 6 SPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAV 65
Query: 158 EAVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
E VD + H+++G++VE KR KE S P
Sbjct: 66 EEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRP 98
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 333 (122.3 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 72/183 (39%), Positives = 113/183 (61%)
Query: 2 EME-LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
E+E L KLFIGG++ T E+ L+ ++ +G+V++ V+M+D AT R+RGFGFI + +
Sbjct: 27 ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMV 86
Query: 61 ERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTE 119
+R + H+IDG+TVEAK+A+PR ++ + N S KK+FVGGL E
Sbjct: 87 DRAQENRPHIIDGKTVEAKRALPRPERESRETNIS----------VKKLFVGGLKDNHDE 136
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
++YF QFG + V ++ D T + RGF F+ +D +AVDK +LK H + V+VK
Sbjct: 137 ECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVK 196
Query: 180 RAV 182
+++
Sbjct: 197 KSI 199
Score = 196 (74.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 46/122 (37%), Positives = 69/122 (56%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGLA TE + K ++ Q+G + DVVVM D T+R RGFGFITY VD+
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
H ++GK VE KRA+P+ P R T N + ++ F+ G +++ + Y
Sbjct: 92 NRPHIIDGKTVEAKRALPR-----PERESRET-NISVKKL--FVGGLKDNHDEECLREYF 143
Query: 226 LR 227
L+
Sbjct: 144 LQ 145
Score = 46 (21.3 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 254 NFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
NF ++GGG + N++ R +NP G N
Sbjct: 386 NFGTGYQQNYGGGPSKHNNMNANR-MNPYSAGPPN 419
Score = 45 (20.9 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 234 PVTIGRSGFTTIGPG-YGMGLNFEPNLSPSHGGGANL--SPNLSYGRGLNPSFGGNSNR 289
P +G +G PG + M PSH ++ +P ++G G ++GG ++
Sbjct: 343 PPPMGHNGPPPTAPGNWNMPPPVPGAAPPSHQQQSSQQPTPQPNFGTGYQQNYGGGPSK 401
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 95/294 (32%), Positives = 150/294 (51%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
++ KLFIGG+S +T E+ L++Y+Q +GE+ + V+++ A+ ++RGFGF+ F+ A +
Sbjct: 19 QIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAA 78
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
+ + H IDGR V+ K+AV R+ Q GS KK+FVGG+ E
Sbjct: 79 MAARPHSIDGRVVDPKRAVSREKSEKQ--------GSL--VNVKKLFVGGIKEDTEEHHL 128
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
++YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV +A+
Sbjct: 129 REYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKAL 188
Query: 183 PK-ELSP--GPSRNQLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRIDGRYGPVTI 237
+ E+ GP + G + +S +F G + GYG + R G
Sbjct: 189 SRQEMKEIQGPRSRKGGPFGFSVSSNGGGNFGRGPGTKFR-GEADGYGNGPESRDGCHGY 247
Query: 238 GRS-GFTTIG--PGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G G G P YG G NF GGG YG S GG N
Sbjct: 248 GGGPGGGNFGGYPCYGGG-NFGGYPCYGGGGGEYAGRRPGYGNQWEFSGGGYGN 300
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 103/290 (35%), Positives = 143/290 (49%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV-VM 65
KLF+GG+SW+T E LRD+F +GE+ + D TGR+RGF FIVF + ++V
Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116
Query: 66 QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H+I+ + V+ KKA R HG KIFVGGL + +++ + K Y
Sbjct: 117 DEHIINSKKVDPKKAKAR-------------HG--------KIFVGGLTTEISDEEIKTY 155
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK- 184
F QFG I +V + +D + +GF FIT+DSE+ V +L ++ GK V+VKRA PK
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
Query: 185 --ELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYN-PSSVGGYGLRIDGR----YGPVTI 237
++ G G G GY ++ S GGYG G YG
Sbjct: 216 ENQMMGGMRGGPRGGMRGGRGGYGG-RGGYNNQWDGQGSYGGYGGGYGGYGAGGYGDYYA 274
Query: 238 GR--SGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGG 285
G +G+ GYG G FE N +GGG N+ GRG P GG
Sbjct: 275 GGYYNGYDYGYDGYGYGGGFEGN---GYGGGGG--GNMGGGRG-GPRGGG 318
Score = 159 (61.0 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 40/111 (36%), Positives = 56/111 (50%)
Query: 71 DGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFG 130
DG E A N + N S+ G R K+FVGGL+ TE + + +F ++G
Sbjct: 23 DGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDR--KLFVGGLSWETTEKELRDHFGKYG 80
Query: 131 IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
I + V D T R RGF FI + + EA+DKV H +N K V+ K+A
Sbjct: 81 EIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 131
Score = 140 (54.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 33/127 (25%), Positives = 65/127 (51%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVF-ADPAVAERVV 64
GK+F+GG++ + +++ ++ YF FG ++E + D+ + +GF FI F ++ V + +
Sbjct: 136 GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLK 195
Query: 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSP-GPARTKKIFVGGLASTVTESDFK 123
K I G+ V+ K+A P+ + N+ + G P G R + GG + D +
Sbjct: 196 TPKQKIAGKEVDVKRATPKPE----NQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQ 251
Query: 124 KYFDQFG 130
+ +G
Sbjct: 252 GSYGGYG 258
Score = 38 (18.4 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 405 GSYDVA-YGDIYESGSFYG 422
G Y YGD Y G + G
Sbjct: 262 GGYGAGGYGDYYAGGYYNG 280
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 85/255 (33%), Positives = 140/255 (54%)
Query: 1 MEME-LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAV 59
ME E + KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A
Sbjct: 1 MEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 60 AERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVT 118
+ + + H ++GR VE K+AV R+D R ++ + KKIFVGG+
Sbjct: 61 VDAAMNARPHKVNGRVVEPKRAVSREDSQ---RPDAYL-------TVKKIFVGGIKEDTE 110
Query: 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
E + YF Q+G + ++ D + + RGF F+T+D ++VDK++++ +H +NG EV
Sbjct: 111 EHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEV 170
Query: 179 KRAVPKELSPGPSRNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
++A P R + G+ N+G R F + + + N S GG+G R G YG
Sbjct: 171 RKA------PSNQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 224
Query: 236 TIGRSGFTTIGPGYG 250
G +G G +G
Sbjct: 225 GDGYNGIDNDGSNFG 239
Score = 224 (83.9 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 69/199 (34%), Positives = 98/199 (49%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 3 PEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNY--GLSRVSS--FLNGYTQSYN 217
+ H++NG++VE KRAV +E S P + G+ + L Y Y
Sbjct: 63 AAMNARPHKVNGRVVEPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYG 122
Query: 218 PSSVGGYGL-RIDGR---YGPVTIG-RSGFTTIG-PGYGM--GLNFEPNLSPSHGGGANL 269
+ V R G+ + VT R I Y G N E +PS+ G +
Sbjct: 123 KTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSNQRGRSG 182
Query: 270 SPNLSYGRGLNPSFGGNSN 288
S N GRG FGGN N
Sbjct: 183 SGNFGGGRG--GGFGGNDN 199
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 101/296 (34%), Positives = 147/296 (49%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG++ T+E LR +F+AFG + + V++ + T R+R FGF+ +++ A+
Sbjct: 5 QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESD 121
+ H +DG TVE K+AV R+D PG A+ KK+FVGGL V E D
Sbjct: 65 MAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDVAEGD 113
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++F QFG + ++ D + + RGFGF+ + + +A DK + FH + G VEVK+A
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 182 VPKEL-----SPGPSRNQLGTHNYGLSRVSSF-LNGYTQSYNPSSVGGYGLRIDGRYGPV 235
VPKE G SR+ G G R NG ++ GG G G YG
Sbjct: 174 VPKEDIHSGGGGGGSRSSRGGRG-GRGRGGGRDQNGLSKG---GGGGGGGYNSYGGYGGG 229
Query: 236 TIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLS-YG--RGLNPSFGGNSN 288
G G+ G G G + GG + S + S YG +G GG S+
Sbjct: 230 GGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKGGGGGGGGGSS 285
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 95/291 (32%), Positives = 152/291 (52%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFI G+S++T ++ LR +F+ +G + V+M+D T R+RGFGF++FA +
Sbjct: 12 QLWKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + + ++GR +E K+ V R+D P T KKIFVGG+ E +
Sbjct: 72 MNARPNKVNGRVLEPKRFVSREDSQ-----------RPAAYLTVKKIFVGGIKEDTEEHE 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
YF+Q+G + VM D + + RGF F+T+D+ ++VD+++++ +H +NG EV++A
Sbjct: 121 --DYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKA 178
Query: 182 VPKELSPGPS---RNQLGTHNYGLSRVSSFL-NGYTQSYNPSSVGGYGLRIDGRYGPVTI 237
+ K+ S R Q G+ N+G R F N N S G G R G YG
Sbjct: 179 LLKQEMASASFSQRGQSGSGNFGGGRGGGFGGNDNFDHDNHWSRGFGGSRSGGGYGGNAD 238
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G +GF G +G G+++ G N S N +G N FGG ++
Sbjct: 239 GYNGFDNDGSNFGGGVSYN-----DFGNYNNQSSNFGPTKGGN--FGGRNS 282
Score = 173 (66.0 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 34/90 (37%), Positives = 57/90 (63%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + K+F+ GL+ T+ + +F+Q+G +T VVM D NT+R RGFGF+ + + E VD
Sbjct: 10 PEQLWKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPS 191
+ +++NG+++E KR V +E S P+
Sbjct: 70 AAMNARPNKVNGRVLEPKRFVSREDSQRPA 99
Score = 58 (25.5 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 22/66 (33%), Positives = 28/66 (42%)
Query: 206 SSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF-EPNLSPSHG 264
S+F G SYN G Y + +GP G G GP G G F +P +G
Sbjct: 248 SNFGGGV--SYN--DFGNYNNQ-SSNFGPTKGGNFGGRNSGPYGGGGQYFAKPRNQGGYG 302
Query: 265 GGANLS 270
G +N S
Sbjct: 303 GSSNSS 308
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 97/304 (31%), Positives = 156/304 (51%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+ +T E+ LR+Y+Q +G++ + V+++D ++ R+RGFGF++F+ A + +
Sbjct: 22 KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPA-RTKKIFVGGLASTVTESDFKK 124
+ H IDGR V +K+ VPR++ G PG TKK+FVGG+ TE +
Sbjct: 82 RPHSIDGRVVASKRVVPREES-----------GKPGACVTTKKLFVGGIKEDTTERHLRD 130
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ + R FGF+T+D + VDK++L+ +H +NG ++++A+ +
Sbjct: 131 YFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSR 188
Query: 185 E--LSPGPSRNQLGTHNYGLSRVSS----------FLNGYTQSYNPSSVG-GYGLRI-DG 230
+ SR + G H G + S F G +++ S G G + DG
Sbjct: 189 QGMQEVQSSRRRRGRH-VGFGDIPSGGGGGGGGGNFGAGPGRNFRGGSEGYARGPVLGDG 247
Query: 231 RY----GPVTIGRSGFTTIGPGYG-MGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGG 285
Y GP G G GYG G + NLS G G YG G +FG
Sbjct: 248 YYEYGGGPAGGSFGGCPGYGGGYGDRGAGYS-NLSSGFGDGYGNYGGGDYGEGNYNAFG- 305
Query: 286 NSNR 289
N N+
Sbjct: 306 NYNQ 309
Score = 187 (70.9 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL S E + Y+ Q+G +TD VV+ D ++QR RGFGF+ + S VD +
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++V KR VP+E S P
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKP 105
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 97/287 (33%), Positives = 143/287 (49%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV- 64
GK+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A ++V+
Sbjct: 148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
Query: 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
+++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E K+
Sbjct: 208 LKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKE 251
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF FG I ++ + D T RGF FITY EE V K+L +H++ E+K A PK
Sbjct: 252 YFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Query: 185 ELSPGPSRNQLGTHNYGLS-RVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFT 243
E+ + Q G R + G Q N + G+ D YG G
Sbjct: 312 EVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQ--GFNNYYDQGYGNYNSAYGGDQ 369
Query: 244 TIGPGYGMGLNFEPNLSPSHGGG---ANLSPNLS-YGRGLNPSFGGN 286
GYG G ++ ++G G A+ S S YG+ GGN
Sbjct: 370 NYS-GYG-GYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRG--GGN 412
Score = 166 (63.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/96 (36%), Positives = 54/96 (56%)
Query: 87 NIQN-RNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR 145
NI+ S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R
Sbjct: 128 NIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGR 187
Query: 146 PRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
RGFGF+ + +VDKVL H+L+GK+++ KRA
Sbjct: 188 SRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 223
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 97/287 (33%), Positives = 143/287 (49%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV- 64
GK+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A ++V+
Sbjct: 148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
Query: 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
+++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E K+
Sbjct: 208 LKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKE 251
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF FG I ++ + D T RGF FITY EE V K+L +H++ E+K A PK
Sbjct: 252 YFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Query: 185 ELSPGPSRNQLGTHNYGLS-RVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFT 243
E+ + Q G R + G Q N + G+ D YG G
Sbjct: 312 EVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQ--GFNNYYDQGYGNYNSAYGGDQ 369
Query: 244 TIGPGYGMGLNFEPNLSPSHGGG---ANLSPNLS-YGRGLNPSFGGN 286
GYG G ++ ++G G A+ S S YG+ GGN
Sbjct: 370 NYS-GYG-GYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRG--GGN 412
Score = 166 (63.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/96 (36%), Positives = 54/96 (56%)
Query: 87 NIQN-RNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR 145
NI+ S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R
Sbjct: 128 NIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGR 187
Query: 146 PRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
RGFGF+ + +VDKVL H+L+GK+++ KRA
Sbjct: 188 SRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 223
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 97/287 (33%), Positives = 143/287 (49%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV- 64
GK+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A ++V+
Sbjct: 148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
Query: 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
+++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E K+
Sbjct: 208 LKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKE 251
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF FG I ++ + D T RGF FITY EE V K+L +H++ E+K A PK
Sbjct: 252 YFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Query: 185 ELSPGPSRNQLGTHNYGLS-RVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFT 243
E+ + Q G R + G Q N + G+ D YG G
Sbjct: 312 EVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQ--GFNNYYDQGYGNYNSAYGGDQ 369
Query: 244 TIGPGYGMGLNFEPNLSPSHGGG---ANLSPNLS-YGRGLNPSFGGN 286
GYG G ++ ++G G A+ S S YG+ GGN
Sbjct: 370 NYS-GYG-GYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRG--GGN 412
Score = 166 (63.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/96 (36%), Positives = 54/96 (56%)
Query: 87 NIQN-RNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR 145
NI+ S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R
Sbjct: 128 NIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGR 187
Query: 146 PRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
RGFGF+ + +VDKVL H+L+GK+++ KRA
Sbjct: 188 SRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 223
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 97/287 (33%), Positives = 143/287 (49%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV- 64
GK+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A ++V+
Sbjct: 29 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 88
Query: 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
+++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E K+
Sbjct: 89 LKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKE 132
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF FG I ++ + D T RGF FITY EE V K+L +H++ E+K A PK
Sbjct: 133 YFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 192
Query: 185 ELSPGPSRNQLGTHNYGLS-RVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFT 243
E+ + Q G R + G Q N + G+ D YG G
Sbjct: 193 EVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQ--GFNNYYDQGYGNYNSAYGGDQ 250
Query: 244 TIGPGYGMGLNFEPNLSPSHGGG---ANLSPNLS-YGRGLNPSFGGN 286
GYG G ++ ++G G A+ S S YG+ GGN
Sbjct: 251 NYS-GYG-GYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRG--GGN 293
Score = 166 (63.5 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 35/96 (36%), Positives = 54/96 (56%)
Query: 87 NIQN-RNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR 145
NI+ S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R
Sbjct: 9 NIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGR 68
Query: 146 PRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
RGFGF+ + +VDKVL H+L+GK+++ KRA
Sbjct: 69 SRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 104
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 100/295 (33%), Positives = 152/295 (51%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFI G+S T ++ LR + + G +++ V+M+D T +RGFGF +A + V
Sbjct: 12 QLWKLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAV 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKMDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
K YF +Q+ I + +M D + + RGF F+T+D + VDK++++ H +NG EV++
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVIQKCHPVNGHDHEVRK 180
Query: 181 AVPK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGY-GLRIDGRYGP 234
A+ K E++ S R++ G+ N+G R F + + N S GG+ G R G YG
Sbjct: 181 ALSKQEMASASSSQRSRSGSGNFGGGRGGGFGGNDNFGHGGNFSGRGGFSGSRGGGGYGS 240
Query: 235 VTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSP----NLSYGRGLNPSFGG 285
G +GF G +G G ++ + +N P NL GR P FGG
Sbjct: 241 SGDGYNGFGNDGSNFGGGGSYN-DFGYYKNQSSNFGPMKGGNLG-GRSSGP-FGG 292
Score = 185 (70.2 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + K+F+ GL+S T+ + + +Q G + D VVM D NT+ RGFGF TY + E VD
Sbjct: 10 PEQLWKLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
V+ H+++G++VE KRAV +E S P
Sbjct: 70 AVMNARPHKMDGRVVEPKRAVSREDSQRP 98
Score = 59 (25.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 26/83 (31%), Positives = 36/83 (43%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN GY +GP+ G G + GP +G G +
Sbjct: 244 GYNGFG-NDGSNFGGG--GSYNDF---GYYKNQSSNFGPMKGGNLGGRSSGP-FGGGGQY 296
Query: 256 EPNLSPSHG-GGANLSPNLSYGR 277
L G GG+ S N GR
Sbjct: 297 FAKLRNQGGYGGSRSSSNYGNGR 319
Score = 40 (19.1 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 274 SYGRGLNPSFGGNSN 288
++G G FGGN N
Sbjct: 202 NFGGGRGGGFGGNDN 216
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 95/291 (32%), Positives = 150/291 (51%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIG +S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + ++GR VE K+AV R+D PG T KKIFVGG+ TE
Sbjct: 72 MNARPQKVNGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKED-TEHH 119
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G + +M D + RGF F+T+D ++VDK++++ +H +NG E +
Sbjct: 120 LRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCETR-- 177
Query: 182 VPKELSPGPS--RNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIG- 238
V ++++ S R + G+ N+G S S Q Y GYG G Y G
Sbjct: 178 VKQDMASASSSQRGRSGSGNFGYSGGSRGYGSGGQGYGNQG-SGYGG--SGSYDSYNNGG 234
Query: 239 -RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
R GF G G G NF S + G N + + ++G +FGG S+
Sbjct: 235 GRGGF-----GSGSGSNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSS 279
Score = 204 (76.9 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 39/89 (43%), Positives = 59/89 (66%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+G L+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ ++NG++VE KRAV +E S P
Sbjct: 70 AAMNARPQKVNGRVVEPKRAVSREDSQRP 98
Score = 69 (29.3 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 27/84 (32%), Positives = 37/84 (44%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G +G S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 235 GRGGFGSGSGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 289
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P +GG ++ S SYG G
Sbjct: 290 AKPRNQGGYGGSSSSS---SYGSG 310
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 88/253 (34%), Positives = 131/253 (51%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-M 65
K+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A ++V+ +
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 66 QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E K+Y
Sbjct: 112 KEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKEY 155
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F FG I ++ + D T RGF FITY EE V K+L +H++ E+K A PKE
Sbjct: 156 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215
Query: 186 LSPGPSRNQLGTHNY-----GLSRVSSFLNG--YTQSYNPSSVGGYGLRIDGRYGPVTI- 237
+ + Q G G +R G + Q +N GYG + YG +
Sbjct: 216 VYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYGDESYS 274
Query: 238 GRSGFTTIGPGYG 250
G G+ G YG
Sbjct: 275 GYGGYDYTGYNYG 287
Score = 163 (62.4 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+ + +VD
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 162 KVLLKTFHELNGKMVEVKRA 181
KVL H+L+GK+++ KRA
Sbjct: 107 KVLELKEHKLDGKLIDPKRA 126
Score = 45 (20.9 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 405 GSYDVAYGDIYESGSFYG 422
G+Y+ AYGD ES S YG
Sbjct: 262 GNYNSAYGD--ESYSGYG 277
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 88/253 (34%), Positives = 131/253 (51%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-M 65
K+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A ++V+ +
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 66 QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E K+Y
Sbjct: 112 KEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKEY 155
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F FG I ++ + D T RGF FITY EE V K+L +H++ E+K A PKE
Sbjct: 156 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215
Query: 186 LSPGPSRNQLGTHNY-----GLSRVSSFLNG--YTQSYNPSSVGGYGLRIDGRYGPVTI- 237
+ + Q G G +R G + Q +N GYG + YG +
Sbjct: 216 VYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYGDESYS 274
Query: 238 GRSGFTTIGPGYG 250
G G+ G YG
Sbjct: 275 GYGGYDYTGYNYG 287
Score = 163 (62.4 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+ + +VD
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 162 KVLLKTFHELNGKMVEVKRA 181
KVL H+L+GK+++ KRA
Sbjct: 107 KVLELKEHKLDGKLIDPKRA 126
Score = 45 (20.9 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 405 GSYDVAYGDIYESGSFYG 422
G+Y+ AYGD ES S YG
Sbjct: 262 GNYNSAYGD--ESYSGYG 277
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 97/304 (31%), Positives = 155/304 (50%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+ +T E+ LR+Y+Q +G++ + V+++D ++ R+RGFGF++F+ A + +
Sbjct: 22 KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPA-RTKKIFVGGLASTVTESDFKK 124
+ H IDGR V +K+ VPR++ G PG TKK+FVGG+ TE +
Sbjct: 82 RPHSIDGRVVASKRVVPREES-----------GKPGACVTTKKLFVGGIKEDTTERHLRD 130
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ + R FGF+T+D + VDK++L+ +H +NG ++++A+ +
Sbjct: 131 YFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSR 188
Query: 185 E--LSPGPSRNQLGTHNYGLSRVSS----------FLNGYTQSYNPSSVG-GYGLRI-DG 230
+ SR G H G + S F G +++ S G G + DG
Sbjct: 189 QGMQEVQSSRRGRGRH-VGFGDIPSGGGGGGGGGNFGAGPGRNFRGGSEGYARGPVLGDG 247
Query: 231 RY----GPVTIGRSGFTTIGPGYG-MGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGG 285
Y GP G G GYG G + NLS G G YG G +FG
Sbjct: 248 YYEYGGGPAGGSFGGCPGYGGGYGDRGAGYS-NLSSGFGDGYGNYGGGDYGEGNYNAFG- 305
Query: 286 NSNR 289
N N+
Sbjct: 306 NYNQ 309
Score = 187 (70.9 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL S E + Y+ Q+G +TD VV+ D ++QR RGFGF+ + S VD +
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++V KR VP+E S P
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKP 105
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 78/212 (36%), Positives = 124/212 (58%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KL IGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ +
Sbjct: 6 QLRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 65
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
V + H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 66 VCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 114
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++ + +H +NG EVK+A
Sbjct: 115 LRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKA 174
Query: 182 VPKE--LSPGPSRNQLGTHNYGLSRVSSFLNG 211
+ K+ S G R + G + R +F G
Sbjct: 175 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGG 206
Score = 200 (75.5 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 46/122 (37%), Positives = 71/122 (58%)
Query: 99 SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
S P + +K+ +GGL+ T+ +++F+++G +TD VVM D T+R RGFGF+TY E
Sbjct: 1 SKEPEQLRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 60
Query: 159 AVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGY---TQS 215
VD + H+++G++VE KRAV +E S P G H L+ F+ G T+
Sbjct: 61 EVDAAVCARPHKVDGRVVEPKRAVSREDSVKP-----GAH---LTVKKIFVGGIKEDTEE 112
Query: 216 YN 217
YN
Sbjct: 113 YN 114
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 99/290 (34%), Positives = 146/290 (50%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG++ T E LR++F A+G + + V++ + T R+R FGF+ ++ A+
Sbjct: 26 QLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEADAA 85
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESD 121
+ H +DG +VE K+AV R+D PG A+ KK+FVGGL V E D
Sbjct: 86 MAASPHAVDGNSVELKRAVSREDS-----------AKPGAHAKVKKLFVGGLKGDVGEGD 134
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++F QFG + ++ D + + RGFGF+ + + +A DK + FH + G VEVK+A
Sbjct: 135 LVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 194
Query: 182 VPKEL----SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTI 237
VPKE G +R G G R +G + +N S GG G G YG
Sbjct: 195 VPKEDIQAGGGGSARPSRGGRGGGRGRGGGG-SG-NRDHNGLSKGGGGYNSYGGYGGG-- 250
Query: 238 GRSGFTTIGPG-YGMGLNFEPNLSPSHGGGANLSPNLS-YGRGLNPSFGG 285
G G+ G G YG G + +GG + S + S YG + GG
Sbjct: 251 GGGGYGGYGGGSYGGG-GGGGDYGNGYGGFGSYSQHQSSYGPMKSGGGGG 299
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 104/300 (34%), Positives = 146/300 (48%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+ + T +D L+ +F+ +G +++ V+MKD T R+RGFGFI ++ + +
Sbjct: 22 QLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA 81
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
+ H IDGRTVE K+AVPR Q I + N A KK+FVGGL E
Sbjct: 82 QNARPHKIDGRTVEPKRAVPR--QEIDSPNAG--------ATVKKLFVGGLRDDHDEECL 131
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
++YF FG I V ++ D +T + RGF FI +D + VDK++L+ H + K ++VK+A+
Sbjct: 132 REYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI 191
Query: 183 PKELSP---------GP---SRNQLGTHNYGLSRVS--SFLNGYTQSYNPSSVGGYGLRI 228
K+ GP R G G + NG GG+G
Sbjct: 192 AKQDMDRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFG-NS 250
Query: 229 DGRYGPVTIGRSGFTTIGPGYGMGLNFEP-NLSPSHGGGANLSPNLSYGRG-LNPSFGGN 286
G +G G SG G G G P N GG N YG G N S+GGN
Sbjct: 251 GGNFGGGQGGGSGGWNQQGGSGGG----PWNNQGGGNGGWNGGGGGGYGGGNSNGSWGGN 306
Score = 203 (76.5 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 42/107 (39%), Positives = 61/107 (57%)
Query: 85 DQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQ 144
+QN N N P + +K+F+GGL T+ K +F+++G I DVVVM D T+
Sbjct: 3 EQNDSNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTK 62
Query: 145 RPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPS 191
R RGFGFITY +D H+++G+ VE KRAVP++ P+
Sbjct: 63 RSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPN 109
Score = 50 (22.7 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 24/76 (31%), Positives = 29/76 (38%)
Query: 211 GYTQSYNPSSVGGYGL-RIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANL 269
G +N GGYG +G +G G G G G G G E S+GGG
Sbjct: 281 GGNGGWNGGGGGGYGGGNSNGSWG----GNGG----GGGGGGGFGNE--YQQSYGGGPQR 330
Query: 270 SPNLSYGRGLNPSFGG 285
+ N R S GG
Sbjct: 331 NSNFGNNRPAPYSQGG 346
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 102/271 (37%), Positives = 143/271 (52%)
Query: 12 GISWDTNE----DRLRDYFQAFGEVLEAVIMKDRAT--GRARGFGFIVFADPAVAERVVM 65
G SW E + LR+YF FGEV E ++M+D T R RGFGF+ F D A ++V+
Sbjct: 109 GPSWSEGECVVTEGLREYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLA 168
Query: 66 Q-KHMIDGRTVEA--KKAVPRDDQ-NIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESD 121
Q +H +D +TV+ K A PR Q +Q RTKKIFVGGL+ T D
Sbjct: 169 QSRHELDSKTVQIDPKVAFPRRAQPKVQM-----------VTRTKKIFVGGLSVNTTVED 217
Query: 122 FKKYFDQFGIIT--DVVVMYDHNTQRPRG--FGFITYDSEEAVDKVLLKTFHELNGKMVE 177
K+YF+QF + D ++M+D T R RG FGF+T++SE+ V+KV FHE+N KMV+
Sbjct: 218 VKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEKVCEIHFHEINNKMVQ 277
Query: 178 V--KRAVPKE-LSP-GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
V K+A PKE +SP G +R + YG+ +F+ G +G G G +
Sbjct: 278 VECKKAQPKEVMSPTGSARGRSRVMPYGMD---AFMLG---------IGMLGTGYPG-FQ 324
Query: 234 PVTIGRSGFTTIGPGYGM---GLNFEPNLSP 261
T +T + PGY G+ F +P
Sbjct: 325 ATTYASRSYTGLAPGYTYQFPGIEFRVERTP 355
Score = 133 (51.9 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVL--EAVIMKDRATGRARG--FGFIVFADPAVAER 62
K+F+GG+S +T + ++ YF+ F +V +A++M D+ T R RG FGF+ F + E+
Sbjct: 203 KIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEK 262
Query: 63 VV-MQKHMIDGRTV--EAKKAVPRD 84
V + H I+ + V E KKA P++
Sbjct: 263 VCEIHFHEINNKMVQVECKKAQPKE 287
Score = 47 (21.6 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPV 235
SPGP G N S VSS+++ + + PS+ G+ L G GP+
Sbjct: 419 SPGPMAELYGAANQD-SGVSSYISAASPA--PSTGFGHSL---GVQGPL 461
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 99/270 (36%), Positives = 140/270 (51%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D A E+V+ Q
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
K H +DGR ++ KKA+ ++ P KKIFVGGL TE ++Y
Sbjct: 61 KEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEEKIREY 103
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG-KMVEVKRAVPK 184
F +FG I + + D + + RGF FIT+ EE V KVL K FH ++G K + +P
Sbjct: 104 FGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKRCGLGVGLPL 163
Query: 185 ELSPGP--------SRNQLGTHNYGLSRVS-SFLNGYTQSYNPSSVGGYGLRIDGRYGPV 235
+L R++ G G S S + Q Y GYG + G YGP
Sbjct: 164 QLMTQRWFLSVSRCERDKKGNRGSGGGGGSGSQSQSWNQGYGNYWNQGYGYQ-QG-YGP- 220
Query: 236 TIGRSGFTTIGP-GYGMGLNFEPNLSPSHG 264
G ++ G GYG G ++ S ++G
Sbjct: 221 GYGGYDYSPYGYYGYGPGYDYSQG-STNYG 249
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 90/251 (35%), Positives = 125/251 (49%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GG+SWDT++ L+DYF FGEV + I D TGR+RGFGFI+F D ++V+
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYF 126
K + R D + I + ++ P KKIFVGGL E ++YF
Sbjct: 125 K---EHRL---------DGRLIDPKKAMAMKKDP----IKKIFVGGLNPEAGEDQIREYF 168
Query: 127 DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186
+ FG I + + D T + RGF FIT+ E+ V K+L K FH ++G E+K A PKE+
Sbjct: 169 ETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIKIAQPKEV 228
Query: 187 SP---GPSRNQLGTHNY--GLSRVSSFLNGYT---QSYNPSSVGGYGLRIDGRYGPVTIG 238
G G G + ++ GY Q Y GGYG + G YG
Sbjct: 229 YQQQYGGRGGSFGGRGGRGGKGQGQNWNQGYNYWNQGYGNQGYGGYGQQGYGGYGNYDYS 288
Query: 239 RSGFTTIGPGY 249
G+ GPGY
Sbjct: 289 GYGYYGYGPGY 299
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 93/278 (33%), Positives = 144/278 (51%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T + LR +F+ + + + V+M+D + R+RGFG I +A + +
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H +DGR VE K AV R+D + PG T KKIFVGG E +
Sbjct: 61 RPHKVDGRVVEPKVAVSREDSH-----------RPGAHLTVKKIFVGGSKEDTEEHHLRV 109
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+Q+G I + +M D + + RGF F+T+D +++VD ++++ +H +NG EV++A+ K
Sbjct: 110 YFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKALLK 169
Query: 185 ELSPGPSRNQLGTHNYGLSRVSSF-LNGYTQSYNPSSVGGYGLRIDGRY--GPVTIGRSG 241
+ S +Q G +S F ++ Y S G G DG G + G G
Sbjct: 170 QEMASASSSQRGRRR-DVSGHGGFGVSHGGGGYGGSGDGYNGFGNDGSNFGGGMKGGNFG 228
Query: 242 FTTIGPGYGMGLNF-EPNLSPSHGGGANLSPNLSYGRG 278
+ GP G G F +P HGG ++ S SYG G
Sbjct: 229 GRSSGPYGGGGQYFAKPRNQGGHGGSSSSS---SYGSG 263
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 91/288 (31%), Positives = 142/288 (49%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
++ KLFIGG+S+ T E+ LR Y+Q +GE+ + V+++D A+ R+RG GF+ F+ +
Sbjct: 7 QIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAA 66
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H IDGR +E ++A+PR+ G G T KK+FVGG+ E
Sbjct: 67 MAARPHSIDGRVLEPRRAIPREAS-----------GQRGAHWTLKKLFVGGIKEDTEEHH 115
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++YF+++G I + ++ D + R RGFGF+T+D + VDK++L+ +H +NG EV++A
Sbjct: 116 LREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKA 175
Query: 182 VPK-ELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRS 240
+ E+ + S SS+ + + G DG YG R
Sbjct: 176 LSIWEMQQVQGSRSRKRDPFDFSVSSSWGGNFGRGPGTKFRG----EADG-YGNGPRSRD 230
Query: 241 GFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G G G G NF GGG YG S GG N
Sbjct: 231 SCQGYGGGPGGG-NFGGYPGYGGGGGEYAGRGPGYGNQWEFSGGGYGN 277
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 96/292 (32%), Positives = 151/292 (51%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ G + + V+M+D T +RGFGF+ + +
Sbjct: 34 QLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAA 93
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D S+ PG KKIFVGG+ E +
Sbjct: 94 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLMVKKIFVGGIKEDTEEYN 142
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G T+ + ++ RGF F+T+D ++ VDK++++ H +NG EVKRA
Sbjct: 143 LRDYFEKYGK-TETIEGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRA 200
Query: 182 VPKELSP--GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
+ K+ P G R + G + + R +F G + Y GG G R G YG
Sbjct: 201 LSKQEMPCAGSQRGRGGGSSNFMGRGGNF--GGREGYGG---GGGGSR--GSYGGSGDRY 253
Query: 240 SGFTTIGPGYGMGLNFEPNLSPSHGG---GANLSPNLSYGRGLNPSFGGNSN 288
GF G YG G ++ S GG G ++ + G G GG+ +
Sbjct: 254 HGFGGDGGNYGGGPSYSSRGSYGGGGPRCGVDVG-GVDVGGGGGDGDGGDGD 304
Score = 193 (73.0 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 42/121 (34%), Positives = 69/121 (57%)
Query: 71 DGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFG 130
DGR E K + ++ ++ H P + +K+F+GGL+ T+ +++F++ G
Sbjct: 7 DGRKKERKGKGRKKERRMEG------HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRG 60
Query: 131 IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE--LSP 188
+TD VVM D T+ RGFGF+T E VD + H+++G++VE KRAV +E + P
Sbjct: 61 TLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 120
Query: 189 G 189
G
Sbjct: 121 G 121
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 92/284 (32%), Positives = 142/284 (50%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+ T E LR+Y+Q +G++ + V+++D + R+RGFGF+ F+ A + +
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESDFKK 124
+ H +DG+ V+ K+AV R++ PG KK+FVGG+ E +
Sbjct: 82 RPHSVDGKVVDPKRAVAREESE-----------KPGAHLAVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV +A+ +
Sbjct: 131 YFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKALSR 190
Query: 185 -ELSPGPSRNQ-LGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGF 242
E+ S G H GL + GGY GR GP +G G+
Sbjct: 191 QEMQEVQSSTSGRGGH-IGLGDSCGGGGNFGAGPGRKYKGGYNGY--GR-GP-GLG-DGY 244
Query: 243 TTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGN 286
G G G G NF P +GGG YG S G N
Sbjct: 245 YGYGGGPGGG-NF--GSCPGYGGGGYGGGGPGYGNQKRGSGGSN 285
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 88/287 (30%), Positives = 144/287 (50%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
M +L KLF+GG++ T ++ LR +F+ +G++ + V++ ++ R+R FGF+ ++ A
Sbjct: 1 MTNQLCKLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEA 60
Query: 61 ERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVT 118
+ + + H++DG V+ K+AV R+D G P A+ KKIFVGGL +
Sbjct: 61 DAAMSARPHIVDGNNVDLKRAVAREDA-----------GKPEMLAKVKKIFVGGLKDDIE 109
Query: 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
+ + YF QFG I V+ D +T + RGFGF+ +D ++ DK ++ FH + G VEV
Sbjct: 110 DEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEV 169
Query: 179 KRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIG 238
K+A+ K+ + G G+ R S F G Y YG + +G +G
Sbjct: 170 KKALTKQEMQSTGGGRGGRGGRGMGRGSGFGGGGRGGY----YNDYGYQNNG-FG----N 220
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGG 285
SG+ + GYG G + + +G G S +G G G
Sbjct: 221 NSGYDSQN-GYGGG--YSDQMGGGYGNGNGYS---DFGEGYGQQASG 261
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 97/302 (32%), Positives = 150/302 (49%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE-R 62
+L KLFIGG+S + + LR + + +G + + V+ +D T +RGFGFI V E
Sbjct: 12 QLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVD 71
Query: 63 VVM--QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTE 119
M + H +DGR VE K+AV R+D PG T KK FVGG+ E
Sbjct: 72 AAMNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKTFVGGIKEDTEE 120
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
+ YF+Q+G I + +M D + + R F F+T+D ++VDK++++ +H +NG EVK
Sbjct: 121 HHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVK 179
Query: 180 RAVPKELSPGPS---RNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG-LRIDGRYGPV 235
+A+ K+ S R++ G+ N+G + + + N S GG+G + G YG
Sbjct: 180 KALSKQEQTSVSSSQRDRSGSGNFGHGGGFGGNDNFGRGGNFSGGGGFGGSQGGGGYGGS 239
Query: 236 TIGRSGFTTIGPGYGMGLNFEP---------NLSPSHGGGANLSPNLSYGRGLNPSFGGN 286
SGF G +G G ++ N P+ GG + YG G +GG+
Sbjct: 240 GDVYSGFGNDGSNFGGGRSYNDFGNYNNQSSNFGPTKGGNFGGRSSGPYGGG---DYGGS 296
Query: 287 SN 288
SN
Sbjct: 297 SN 298
Score = 180 (68.4 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 39/99 (39%), Positives = 60/99 (60%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ +T + + +Q+G++TD VV D NT+ RGFGFIT
Sbjct: 2 SKSESSKDPEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFIT 61
Query: 154 YDSE--EAVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ E VD + H+++G++VE KRAV +E S P
Sbjct: 62 CTTATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 100
Score = 59 (25.8 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 206 SSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGG 265
S+F G +SYN G Y + +GP G G + GP YG G + S S+GG
Sbjct: 251 SNFGGG--RSYN--DFGNYNNQ-SSNFGPTKGGNFGGRSSGP-YGGGDYGGSSNSSSYGG 304
Query: 266 G 266
G
Sbjct: 305 G 305
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 97/292 (33%), Positives = 151/292 (51%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIG +S +T E+ L +Y++ +G + + V+++D A+ ++R FGFI F+ A + +
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKK 124
+ H IDG+ V K+AVPR+D HG G T KK+FVGG+ + E +
Sbjct: 82 RPHFIDGKMVMPKRAVPRED-----------HGKLGALITVKKLFVGGITEDMKEHHLRD 130
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGFIT+D + VDK++L+ H +NG EV++A+ +
Sbjct: 131 YFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAEVRKALSR 190
Query: 185 -ELSPGPSRNQLGTHNYGLSRVSSFLN--GYTQSYN-PSSVGGYGLRI---DGRYGPVTI 237
E G G + GL G + N GGYG DG +G
Sbjct: 191 QERQEGQHLRSRGEGDVGLGYFHGVGGNVGAGRGRNFRGGAGGYGRGRQFGDGSHGYG-- 248
Query: 238 GRSGFTTIG--PGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNS 287
GR+G + G PGYG G S GG A+ + + R ++GG S
Sbjct: 249 GRAGGGSWGVRPGYGGGRG-----GCSGGGSADGYQDEGF-RACYDNYGGRS 294
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 92/277 (33%), Positives = 139/277 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + E
Sbjct: 50 EEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVE 109
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ KKA + ++ + P KKIFVGGL+ E
Sbjct: 110 KVITQKEHKLNGKVIDPKKA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 153
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YFD +G + + + ++ T + RGF FIT+ EE V K++ K +H + EVK
Sbjct: 154 KIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEVKV 213
Query: 181 AVPKELSPGPSR--NQLGTHNYGLSRVSSFLN---GYTQSYNPS--SVGGYGLRIDGRYG 233
A+ KE + + G + G R N GY +N + G YG G G
Sbjct: 214 AMSKEQYQQQQQWGGRGGYTSRGRGRGGPNQNWNQGYGNYWNQGYGNYGNYGYNNQGYGG 273
Query: 234 PVTIGRSGFTTIGPGYGMGLNFEPNLSPSH--GGGAN 268
SG+ GYG N + S GG N
Sbjct: 274 YGGYDYSGYNNYY-GYGDYSNQQSGYGKSQRRGGHQN 309
Score = 181 (68.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S I S K+FVGGL+ T+ D K YF +FG + D + D T R RGFGF+
Sbjct: 42 SKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVL 101
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ E+V+KV+ + H+LNGK+++ K+A
Sbjct: 102 FKEAESVEKVITQKEHKLNGKVIDPKKA 129
Score = 42 (19.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 265 GGANLSPNLSYGRGLNPSFGGNSN 288
GG N + N YG N +G N
Sbjct: 240 GGPNQNWNQGYGNYWNQGYGNYGN 263
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 69/179 (38%), Positives = 111/179 (62%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KL + GI WD + D L+DY FG++ + ++MKDR+TGR+RGFG++ FA A+ +
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYF 126
+H + R +E K A P+++ P T+ IFV + S+V+ESDF+ +F
Sbjct: 64 EHFLGNRILEVKVATPKEEMR-----------QPAKKVTR-IFVARIPSSVSESDFRSHF 111
Query: 127 DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
+++G ITD+ + D+N+++ RG GFIT+ S ++V+ ++ T H+L G V V RA PKE
Sbjct: 112 ERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRATPKE 169
Score = 165 (63.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+G + + + D LRDYF FG + +A I KD RGFGF+ FA+ VA+RV +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP 102
H I G+ V A P D+ + SS+ S P
Sbjct: 301 SHEICGQEVAIDSATPLDEAG-PSAGASSMLSSSRP 335
Score = 147 (56.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+ V G+ + K Y +FG + D +VM D +T R RGFG++T+ S E K L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDA-KNAL 61
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSR 192
K H L +++EVK A PKE P++
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAK 88
Score = 138 (53.6 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 92 NNSSIHGSPGPART---KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRG 148
N ++ +G P KIFVG L + D + YF +FG I D + D RG
Sbjct: 223 NPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRG 282
Query: 149 FGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPS 191
FGF+T+ D+V ++ HE+ G+ V + A P + GPS
Sbjct: 283 FGFVTFAENGVADRVARRS-HEICGQEVAIDSATPLD-EAGPS 323
Score = 122 (48.0 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
++F+ I +E R +F+ +GE+ + + KD + + RG GFI F+ E ++
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 67 KHMIDGRTVEAKKAVPRDDQN 87
H + G TV +A P++D +
Sbjct: 152 THDLGGTTVAVDRATPKEDDH 172
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 92/269 (34%), Positives = 142/269 (52%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLQKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAA 70
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
+ + H +DGR VE K+AV R+D + + + KKIFVGG+ TE
Sbjct: 71 MNARPHKVDGRVVEPKRAVSREDSQTLDAHLT----------VKKIFVGGIKEN-TEDHL 119
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF+ +G I + +M D + + RGF F+T+D ++VDK++ K +H +NG EV++A+
Sbjct: 120 RDYFE-YGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQK-YHTVNGHNCEVRKAL 177
Query: 183 PK-ELSPGPSRNQL-GTHNYGLS-RVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
K E++ S L G+ N+G +S G++ S GG G DG G G
Sbjct: 178 SKQEMASASSSQSLSGSGNFGGGCGGNSGRGGFSGSRGGGGNGGSG---DGYSG---FGN 231
Query: 240 SGFTTIGPGY---GMGLNFEPNLSPSHGG 265
G G Y G N N P GG
Sbjct: 232 DGSNFGGGSYNDFGTYNNQSSNFGPIKGG 260
Score = 189 (71.6 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 39/93 (41%), Positives = 61/93 (65%)
Query: 94 SSIHGSPG-PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFI 152
S + SP P + +K+F+GGL+ T+ + +F+ +G +T VVM D NT+R RGFGF+
Sbjct: 1 SCLSQSPKEPEQLQKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFV 59
Query: 153 TYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
TY + E VD + H+++G++VE KRAV +E
Sbjct: 60 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSRE 92
Score = 51 (23.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 215 SYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHG-GGANLSPNL 273
SYN G Y + +GP+ G G + GP G G + L G GG++ S +
Sbjct: 240 SYN--DFGTYNNQ-SSNFGPIKGGNFGGKSSGPCGGGG-QYLAKLQNQGGYGGSSSSSSC 295
Query: 274 SYGR 277
GR
Sbjct: 296 GSGR 299
Score = 42 (19.8 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 19/65 (29%), Positives = 24/65 (36%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG-----LRIDGRYGPVTIGRSGFT 243
G S N GT+N S G + GG G L+ G YG G S +
Sbjct: 238 GGSYNDFGTYNNQSSNFGPIKGGNFGGKSSGPCGGGGQYLAKLQNQGGYG----GSSSSS 293
Query: 244 TIGPG 248
+ G G
Sbjct: 294 SCGSG 298
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 79/222 (35%), Positives = 120/222 (54%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ- 66
L IGG+S++T +D LR++ + +G + + V+M D T +RGFGF+ ++ + +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKKY 125
H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E + + Y
Sbjct: 61 PHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNLRDY 109
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+++G I + VM D + + RGF F+T+D + VDK++ + H +N EVK+AV K+
Sbjct: 110 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSKQ 169
Query: 186 --LSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
S GP R G + R +F G Y GGYG
Sbjct: 170 EMQSAGPQRGHGGGSGNFMGRGGNFGRG-GPGYGNQG-GGYG 209
Score = 184 (69.8 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
Identities = 37/93 (39%), Positives = 56/93 (60%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GGI DT E LRDYF+ +G++ +M+DR +G+ RGF F+ F D +++V Q
Sbjct: 91 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQ 150
Query: 67 KH-MIDGRTVEAKKAVPRDDQNIQNRNNSSIHG 98
+H I+ E KKAV + Q +Q+ HG
Sbjct: 151 EHHAINRHNCEVKKAVSK--QEMQSAGPQRGHG 181
Score = 40 (19.1 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 222 GGYGLRIDGRYGPVTIGRSGFTTIGPGYG 250
GG G GR G G G+ G GYG
Sbjct: 182 GGSG-NFMGRGGNFGRGGPGYGNQGGGYG 209
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 87/270 (32%), Positives = 143/270 (52%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG++++T ++ LR +F+ +G + E V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
+ + H +DGR VE ++AV R+D + + T KIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPERAVSREDSH---------------SLTVKIFVGGIKEDTEEHYL 116
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ Y +Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +N V++A+
Sbjct: 117 RDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIRKYHTVNDHNC-VRKAL 175
Query: 183 PK-ELSPGPS--RNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGG-YGLRIDGRYGPVTIG 238
K E++ S R + G+ N G R SS+ + Y S GG G G G
Sbjct: 176 SKQEMASASSSQRGRSGSGN-GYGRSSSY-DSYNNGGGGGSFGGGSGSNFGG--GGSYND 231
Query: 239 RSGFTTIGPGYGM--GLNFEPNLSPSHGGG 266
S + +G+ G NF S +GGG
Sbjct: 232 FSNYNNQSSNFGLMKGGNFGGRSSGPYGGG 261
Score = 200 (75.5 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 36/84 (42%), Positives = 58/84 (69%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL T+ + +F+Q+G +T+ VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKE 185
+ H+++G++VE +RAV +E
Sbjct: 70 AAMNARPHKVDGRVVEPERAVSRE 93
Score = 57 (25.1 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
GRSG G GYG +++ S ++GGG S+G G +FGG +
Sbjct: 189 GRSGS---GNGYGRSSSYD---SYNNGGGGG-----SFGGGSGSNFGGGGS 228
Score = 45 (20.9 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSFYGD 423
GSG GYGR+S GS+ G + G Y D
Sbjct: 192 GSGN-GYGRSSSYDSYNNGGGGGSFGGGSGSNFGGGGSYND 231
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 77/185 (41%), Positives = 107/185 (57%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I TGR++GFGFI+F D A E
Sbjct: 60 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVE 119
Query: 62 RVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESD 121
+V+ QK + R D + I + ++ P KKIFVGGL TE
Sbjct: 120 KVLDQK---EHRL---------DGRVIDPKKAMAMKKDP----VKKIFVGGLNPEATEEK 163
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++YF +FG I + + D T + RGF FIT+ EE V KVL K FH ++G E+K A
Sbjct: 164 IREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVA 223
Query: 182 VPKEL 186
PKE+
Sbjct: 224 QPKEV 228
Score = 172 (65.6 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 37/109 (33%), Positives = 59/109 (54%)
Query: 80 AVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
A P +QN I+ S K+FVGGL+ ++ D K YF +FG + D +
Sbjct: 40 APPAGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM 97
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
NT R +GFGFI + +V+KVL + H L+G++++ K+A+ + P
Sbjct: 98 VPNTGRSKGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 146
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 86/258 (33%), Positives = 131/258 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + +
Sbjct: 41 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 100
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 101 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 144
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 145 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 204
Query: 181 AVPKEL----SPGPSRNQLG--THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGP 234
A+ KE SR G ++ GY+ +N G YG G YG
Sbjct: 205 AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN-QGYGNYGYNSQG-YGG 262
Query: 235 VTIGRSGFTTIGPGYGMG 252
G +T YG G
Sbjct: 263 Y--GGYDYTGYNNYYGYG 278
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 85/258 (32%), Positives = 131/258 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+FIGG+SWDT + L+DYF FG+V++ + D TGR+RGFGF++F + +
Sbjct: 72 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 131
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 132 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 175
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 176 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 235
Query: 181 AVPKEL----SPGPSRNQLG--THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGP 234
A+ KE SR G ++ GY+ +N G YG G YG
Sbjct: 236 AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN-QGYGSYGYNSQG-YGG 293
Query: 235 VTIGRSGFTTIGPGYGMG 252
G +T YG G
Sbjct: 294 Y--GGYDYTGYNSYYGYG 309
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 71/195 (36%), Positives = 114/195 (58%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S+ T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 5 QLLKLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVG E
Sbjct: 65 MNARPHKVDGRVVEPKRAVSREDSR-----------RPGAHLTVKKIFVG---EDTEEHH 110
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 111 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 170
Query: 182 VPKELSPGPSRNQLG 196
+ K+ S +Q G
Sbjct: 171 LSKQEMASASSSQRG 185
Score = 208 (78.3 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 3 PEQLLKLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 63 AAMNARPHKVDGRVVEPKRAVSREDSRRP 91
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 33/96 (34%), Positives = 54/96 (56%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+G DT E LRDYF+ +G++ IM DR +G+ RGF F+ F D +++V+Q
Sbjct: 99 KIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 155
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
K H ++G E +KA+ + + + + G G
Sbjct: 156 KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGQSG 191
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 305 (112.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 89/255 (34%), Positives = 135/255 (52%)
Query: 38 MKDRATGRARGFGFIVFADPAVAERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSI 96
M+D A+ R+RGFGF+ F+ A + + + H IDGR VE K+AV R++
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES---------- 50
Query: 97 HGSPGPART-KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYD 155
G PG T KK+FVGG+ E + YF+++G I + ++ D + + RGFGF+T+D
Sbjct: 51 -GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 109
Query: 156 SEEAVDKVLLKTFHELNGKMVEVKRAVPK-ELSP-GPSRN-QLGTHNYGLSRVS--SFLN 210
+ VDK++L+ +H +NG EV++A+ + E+ SR+ + G +G SR +F
Sbjct: 110 DHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGP 169
Query: 211 GYTQSYNPSSVGGYGLRIDGR-YGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANL 269
G ++ S GYG GR +G G +G+ GPG G NF SP +GGG
Sbjct: 170 GPGSNFRGGS-DGYG---SGRGFGD---GYNGYGG-GPGGG---NFGG--SPGYGGGRG- 215
Query: 270 SPNLSYGRGLNPSFG 284
YG G P +G
Sbjct: 216 ----GYGGG-GPGYG 225
Score = 198 (74.8 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 38/86 (44%), Positives = 57/86 (66%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLF+GGI DT E LRDYF+ +G++ I+ DR +G+ RGFGF+ F D +++V+Q
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 120
Query: 67 K-HMIDGRTVEAKKAVPRDD-QNIQN 90
K H I+G E +KA+ R + Q +Q+
Sbjct: 121 KYHTINGHNAEVRKALSRQEMQEVQS 146
Score = 64 (27.6 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 30/105 (28%), Positives = 37/105 (35%)
Query: 189 GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP 247
GP G + YG R G Y GGYG D YG G + G
Sbjct: 198 GPGGGNFGGSPGYGGGRGG--YGGGGPGYGNQG-GGYGGGYDN-YGGGNYGSGNYNDFGN 253
Query: 248 GYGMGLNFEPNLSPSHGGGANLS-P--NLSYGRGLNPSFGGNSNR 289
N+ P S + GG N+ P +YG G + GG R
Sbjct: 254 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 298
Score = 41 (19.5 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSF--YGDSTWRP 428
G G GYG G YD G Y SG++ +G+ +P
Sbjct: 211 GGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 258
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 85/258 (32%), Positives = 130/258 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ E K+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + +
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 256
Query: 181 AVPKEL----SPGPSRNQLG--THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGP 234
A+ KE SR G ++ GY+ +N G YG G YG
Sbjct: 257 AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN-QGYGNYGYNSQG-YGG 314
Query: 235 VTIGRSGFTTIGPGYGMG 252
G +T YG G
Sbjct: 315 Y--GGYDYTGYNNYYGYG 330
Score = 196 (74.1 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 40/107 (37%), Positives = 65/107 (60%)
Query: 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFKKYFDQFGIITD 134
AK +++++ + N+S H A+ + K+F+GGL+ T+ D K YF +FG + D
Sbjct: 66 AKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ D T R RGFGF+ + E+VDKV+ + H+LNGK+++ KRA
Sbjct: 126 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 85/258 (32%), Positives = 130/258 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ E K+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + +
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 256
Query: 181 AVPKEL----SPGPSRNQLG--THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGP 234
A+ KE SR G ++ GY+ +N G YG G YG
Sbjct: 257 AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN-QGYGNYGYNSQG-YGG 314
Query: 235 VTIGRSGFTTIGPGYGMG 252
G +T YG G
Sbjct: 315 Y--GGYDYTGYNNYYGYG 330
Score = 196 (74.1 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 40/107 (37%), Positives = 65/107 (60%)
Query: 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFKKYFDQFGIITD 134
AK +++++ + N+S H A+ + K+F+GGL+ T+ D K YF +FG + D
Sbjct: 66 AKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ D T R RGFGF+ + E+VDKV+ + H+LNGK+++ KRA
Sbjct: 126 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 85/258 (32%), Positives = 130/258 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ E K+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + +
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 256
Query: 181 AVPKEL----SPGPSRNQLG--THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGP 234
A+ KE SR G ++ GY+ +N G YG G YG
Sbjct: 257 AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN-QGYGNYGYNSQG-YGG 314
Query: 235 VTIGRSGFTTIGPGYGMG 252
G +T YG G
Sbjct: 315 Y--GGYDYTGYNNYYGYG 330
Score = 196 (74.1 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 40/107 (37%), Positives = 65/107 (60%)
Query: 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFKKYFDQFGIITD 134
AK +++++ + N+S H A+ + K+F+GGL+ T+ D K YF +FG + D
Sbjct: 66 AKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ D T R RGFGF+ + E+VDKV+ + H+LNGK+++ KRA
Sbjct: 126 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 85/258 (32%), Positives = 130/258 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ E K+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + +
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 256
Query: 181 AVPKEL----SPGPSRNQLG--THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGP 234
A+ KE SR G ++ GY+ +N G YG G YG
Sbjct: 257 AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN-QGYGNYGYNSQG-YGG 314
Query: 235 VTIGRSGFTTIGPGYGMG 252
G +T YG G
Sbjct: 315 Y--GGYDYTGYNNYYGYG 330
Score = 196 (74.1 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 42/116 (36%), Positives = 70/116 (60%)
Query: 71 DGRTVEAKKA---VPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFKKY 125
+G + EA+ A +++++ + N+S H A+ + K+F+GGL+ T+ D K Y
Sbjct: 57 EGGSAEAEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDY 116
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
F +FG + D + D T R RGFGF+ + E+VDKV+ + H+LNGK+++ KRA
Sbjct: 117 FSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 69/203 (33%), Positives = 113/203 (55%)
Query: 1 MEME-LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAV 59
ME E + KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A
Sbjct: 4 MEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 63
Query: 60 AERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVT 118
+ + + H +DGR VE K+AV +D PG KIFVG +
Sbjct: 64 VDAAMNARPHKVDGRVVEPKRAVSIEDSQ-----------RPGAYLNMKIFVGAIKEDTE 112
Query: 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
E + YF Q+G + ++ D + + RGF F+T+D ++VDK++++ +H +NG EV
Sbjct: 113 EHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEV 172
Query: 179 KRAVPKELSPGPSRNQLGTHNYG 201
++A K+ S +Q G G
Sbjct: 173 RKAPSKQEMASASSSQRGRSGSG 195
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 84/258 (32%), Positives = 130/258 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ E K+FIGG+SWDT + L+DYF FG+V++ + D TGR+RGFGF++F + +
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 151 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 194
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 195 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 254
Query: 181 AVPKEL----SPGPSRNQLG--THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGP 234
A+ KE SR G ++ GY+ +N G YG G YG
Sbjct: 255 AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN-QGYGSYGYNSQG-YGG 312
Query: 235 VTIGRSGFTTIGPGYGMG 252
G +T YG G
Sbjct: 313 Y--GGYDYTGYNSYYGYG 328
Score = 196 (74.1 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 42/116 (36%), Positives = 70/116 (60%)
Query: 71 DGRTVEAKKA---VPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFKKY 125
+G + EA+ A +++++ + N+S H A+ + K+F+GGL+ T+ D K Y
Sbjct: 55 EGGSTEAEGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDY 114
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
F +FG + D + D T R RGFGF+ + E+VDKV+ + H+LNGK+++ KRA
Sbjct: 115 FSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 170
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 84/258 (32%), Positives = 130/258 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ E K+FIGG+SWDT + L+DYF FG+V++ + D TGR+RGFGF++F + +
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 151 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 194
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 195 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 254
Query: 181 AVPKEL----SPGPSRNQLG--THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGP 234
A+ KE SR G ++ GY+ +N G YG G YG
Sbjct: 255 AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN-QGYGSYGYNSQG-YGG 312
Query: 235 VTIGRSGFTTIGPGYGMG 252
G +T YG G
Sbjct: 313 Y--GGYDYTGYNSYYGYG 328
Score = 196 (74.1 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 42/116 (36%), Positives = 70/116 (60%)
Query: 71 DGRTVEAKKA---VPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFKKY 125
+G + EA+ A +++++ + N+S H A+ + K+F+GGL+ T+ D K Y
Sbjct: 55 EGGSTEAEGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDY 114
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
F +FG + D + D T R RGFGF+ + E+VDKV+ + H+LNGK+++ KRA
Sbjct: 115 FSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 170
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 85/265 (32%), Positives = 132/265 (49%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + ++V+ Q
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + ++ + P KKIFVGGL+ E ++Y
Sbjct: 61 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 104
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K A+ KE
Sbjct: 105 FGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 164
Query: 186 LSP-----GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
G +G G ++ GY+ +N G YG G YG G
Sbjct: 165 QYQQQQQWGSRGGFVGRARGRGGGPSQNWNQGYSNYWN-QGYGNYGYNSQG-YG----GY 218
Query: 240 SGFTTIGPGYGMGLNFEPNLSPSHG 264
G+ G G + N +G
Sbjct: 219 GGYDYTGYNNYYGYSDYSNQQSGYG 243
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 81/240 (33%), Positives = 128/240 (53%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ E K+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + +
Sbjct: 26 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 85
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 86 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 129
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 130 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 189
Query: 181 AVPKELSP------------GPSRNQLGTHNYGLSR-VSSFLN-GY-TQSYNPSSVGGYG 225
A+ KE G +R + G + ++ S++ N GY YN GGYG
Sbjct: 190 AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYG 249
Score = 191 (72.3 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 38/96 (39%), Positives = 59/96 (61%)
Query: 88 IQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR 145
+ + N+S H A+ + K+F+GGL+ T+ D K YF +FG + D + D T R
Sbjct: 10 VGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 69
Query: 146 PRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
RGFGF+ + E+VDKV+ + H+LNGK+++ KRA
Sbjct: 70 SRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 105
Score = 60 (26.2 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 28/88 (31%), Positives = 36/88 (40%)
Query: 184 KELSPGPSRNQLGTHNYGLSR----VSSFLNGYTQSYNPSSVGGYGLRIDGRYG-PVTIG 238
KE P + HN GLS+ V+ Y Q S GG+ R GR G P
Sbjct: 164 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNW 223
Query: 239 RSGFTTI-GPGYGMGLNFEPNLSPSHGG 265
G++ GYG N+ N S +GG
Sbjct: 224 NQGYSNYWNQGYG---NYGYN-SQGYGG 247
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 79/214 (36%), Positives = 118/214 (55%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD--PAVAE 61
+L KLFIG +S++T +D LR++F+ +G L+ V+M+D R+R FGF+ V
Sbjct: 16 QLRKLFIGCLSFETTDDSLREHFEKWG-TLDCVVMRDLQIKRSRSFGFVSTYSCVKEVDA 74
Query: 62 RVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTES 120
+ + H +DG VE K+AV R+D S+ PG T KKIFVGG+ E
Sbjct: 75 AMCARPHKVDGHVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEY 123
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+ + YF+++G I + VM D + + RGF F+T+D + VDK++ K +H +NG EVK+
Sbjct: 124 NLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQK-YHTINGHNYEVKK 182
Query: 181 AVPKE--LSPGPSRNQLGTHNYGLSRVSSFLNGY 212
AV K+ S G R + G G NGY
Sbjct: 183 AVSKQEMQSAGSQRGRGGNFGGGGGNFGHGGNGY 216
Score = 157 (60.3 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 42/125 (33%), Positives = 67/125 (53%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFI-TYD 155
H P + +K+F+G L+ T+ +++F+++G + D VVM D +R R FGF+ TY
Sbjct: 9 HDPKEPEQLRKLFIGCLSFETTDDSLREHFEKWGTL-DCVVMRDLQIKRSRSFGFVSTYS 67
Query: 156 SEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGY--- 212
+ VD + H+++G +VE KRAV +E S P G H L+ F+ G
Sbjct: 68 CVKEVDAAMCARPHKVDGHVVEPKRAVSREDSVKP-----GAH---LTVKKIFVGGIKED 119
Query: 213 TQSYN 217
T+ YN
Sbjct: 120 TEEYN 124
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 90/279 (32%), Positives = 140/279 (50%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR F+ G + + V+ +D R+RGFGF+ +A E V
Sbjct: 12 QLRKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYA---TVEEV 68
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123
+ H +D R VE K A+ R+D S G+ P KK+FVGG+ E +
Sbjct: 69 KGRPH-VDERVVEPKWAISRED--------SQRPGAHLPV--KKVFVGGIKEDTEEHHLR 117
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
YF+Q+G I + +M D + + RGF FI +D +++DK++++ +H NG EV++A+
Sbjct: 118 DYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIVIQKYHTGNGLNCEVRKALS 176
Query: 184 KELSPGPSRNQL---GTHNYGLSRVSSFLNGYTQSYNPSSVGGYG-LRIDGRYGPVTIGR 239
K+ S +Q G GL +F G N S GG+G R G Y
Sbjct: 177 KQEMASASSSQRDFGGGRGGGLGGSDNFGRGG----NFSGRGGFGGSRGGGGYAGSGYCY 232
Query: 240 SGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRG 278
+GF G +G G ++ + GG + YG G
Sbjct: 233 NGFGNDGSNFGGGGSYNDFGNYKKGGNVGGRSSGLYGGG 271
Score = 151 (58.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 34/89 (38%), Positives = 52/89 (58%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + F+Q G +TD VV D N +R RGFGF+TY + E V
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYATVEEV- 68
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
K ++ ++VE K A+ +E S P
Sbjct: 69 ----KGRPHVDERVVEPKWAISREDSQRP 93
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 91/290 (31%), Positives = 143/290 (49%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR + + +M D T +RGF F+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHCSHS----PSCVMTDPNTKCSRGFRFVTYATVEEVDAA 67
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +D R VE K+ V R+ PG T KKIF GG+ E
Sbjct: 68 MNARPHKVDRRVVEPKRGVSREGSQ-----------RPGAHLTVKKIFAGGIKEDTEERH 116
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+ G I + +M D ++ + RGF F+T+D ++VDK +++ +H +NG EV++A
Sbjct: 117 LRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNREVRKA 176
Query: 182 VPK-ELSPGPS--RNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIG 238
+ K E++ S R + G+ N+G R F G +++ G G R GRYG G
Sbjct: 177 LSKQEMASASSSQRGRSGSGNFGGGRGGGF--GGNENFGHGGNGSGGSRGGGRYGGGGDG 234
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
+GF G +G G ++ G N S N +G N FGG S+
Sbjct: 235 YNGFGNDGSNFGGGGSYS-----DFGNYNNRSSNFGPVKGEN--FGGRSS 277
Score = 131 (51.2 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + + + VM D NT+ RGF F+TY + E VD
Sbjct: 10 PGQLRKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVD 65
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++ ++VE KR V +E S P
Sbjct: 66 AAMNARPHKVDRRVVEPKRGVSREGSQRP 94
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 84/264 (31%), Positives = 131/264 (49%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + ++V+ QK
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 68 -HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYF 126
H ++G+ ++ K+A + ++ + P KKIFVGGL+ E ++YF
Sbjct: 61 EHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREYF 104
Query: 127 DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186
FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K A+ KE
Sbjct: 105 GAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ 164
Query: 187 SP-----GPSRNQLG-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRS 240
G +G G ++ GY+ +N G YG G YG G
Sbjct: 165 YQQQQQWGSRGGFVGRARGRGGGPSQNWNQGYSNYWN-QGYGNYGYNSQG-YG----GYG 218
Query: 241 GFTTIGPGYGMGLNFEPNLSPSHG 264
G+ G G + N +G
Sbjct: 219 GYDYTGYNNYYGYSDYSNQQSGYG 242
Score = 162 (62.1 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 48/150 (32%), Positives = 76/150 (50%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GG+S DT E+++R+YF AFGEV + D T + RGF FI F + ++++ +
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
K H + E K A+ ++ Q Q + S G G AR + GG S + Y
Sbjct: 145 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFVGRARGR----GGGPSQNWNQGYSNY 199
Query: 126 FDQ-FGIITDVVVMYDHNTQRPRGFGFITY 154
++Q +G Y +N+Q G+G Y
Sbjct: 200 WNQGYG-------NYGYNSQGYGGYGGYDY 222
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 76/234 (32%), Positives = 128/234 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLF GG++++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A P E V
Sbjct: 19 QLRKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA-PV--EEV 75
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDF 122
+ H + +AV R+D +PG T KKIFVGG+ E
Sbjct: 76 DRKDHTRWMEELWNLRAVSREDSQ-----------TPGAHLTVKKIFVGGIKEDTEEHHL 124
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ Y +Q+G I V +M D + + GF F+T+D ++VDK++++ +H +NG EV++A+
Sbjct: 125 RDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 184
Query: 183 PKELSPGPS---RNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
K+ S R + G+ NY + ++ N + ++ P G +G R G YG
Sbjct: 185 SKQEMASASFSQRGRSGSRNY--NDFGNY-NNQSSNFGPMKGGNFGGRSSGPYG 235
Score = 160 (61.4 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F GGL T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY E VD
Sbjct: 17 PEQLRKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVD 76
Query: 162 K 162
+
Sbjct: 77 R 77
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 78/230 (33%), Positives = 122/230 (53%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ E K+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + +
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 256
Query: 181 AVPKELSP------------GPSRNQLGTHNYGLSRVSSFLNGYTQSYNP 218
A+ KE G +R + G G +VS G+ SY P
Sbjct: 257 AMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSR-RGGHQNSYKP 305
Score = 196 (74.1 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 40/107 (37%), Positives = 65/107 (60%)
Query: 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFKKYFDQFGIITD 134
AK +++++ + N+S H A+ + K+F+GGL+ T+ D K YF +FG + D
Sbjct: 66 AKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ D T R RGFGF+ + E+VDKV+ + H+LNGK+++ KRA
Sbjct: 126 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 49 (22.3 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 22/78 (28%), Positives = 32/78 (41%)
Query: 184 KELSPGPSRNQLGTHNYGLSR----VSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
KE P + HN GLS+ V+ Y Q S GG+ R GR G +
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQ---Q 287
Query: 240 SGFTTIGPGYGMGLNFEP 257
SG+ + G +++P
Sbjct: 288 SGYGKVSRRGGHQNSYKP 305
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 77/225 (34%), Positives = 120/225 (53%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + ++V+ Q
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + ++ + P KKIFVGGL+ E ++Y
Sbjct: 62 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 105
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K A+ KE
Sbjct: 106 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 165
Query: 186 LSP------------GPSRNQLGTHNYGLSRVSSFLNGYTQSYNP 218
G +R + G G +VS G+ SY P
Sbjct: 166 QYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSR-RGGHQNSYKP 209
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 68/180 (37%), Positives = 103/180 (57%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
+ IG + T+E LR +F+AFG + + V++ + T R+R FGF+ +++ A+ +
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 68 -HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESDFKKY 125
H +DG TVE K+AV R+D PG A+ KK+FVGGL V E D ++
Sbjct: 69 PHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDVAEGDLIEH 117
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F QFG + ++ D + + RGFGF+ + S +A DK + FH + G VEVK+AVPKE
Sbjct: 118 FSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
Score = 174 (66.3 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLF+GG+ D E L ++F FG V +A I+ D+ +G+ RGFGF+ F A++ +
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVV 158
Query: 67 K-HMIDGRTVEAKKAVPRDD 85
K H I G VE KKAVP++D
Sbjct: 159 KFHPIQGHRVEVKKAVPKED 178
Score = 157 (60.3 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 33/91 (36%), Positives = 51/91 (56%)
Query: 100 PGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEA 159
P A + +G +ES + +F+ FG +TD VV+ + T+R R FGF+TY + E
Sbjct: 1 PSAASLCGVLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 160 VDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
D + + H ++G VE+KRAV +E S P
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSREDSARP 91
Score = 39 (18.8 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 400 VSSTKGSYDVAYGDIYESGSFYG 422
V KG DVA GD+ E S +G
Sbjct: 102 VGGLKG--DVAEGDLIEHFSQFG 122
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 77/230 (33%), Positives = 122/230 (53%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ E K+FIGG+SWDT + L+DYF FG+V++ + D TGR+RGFGF++F + +
Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 151 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 194
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V K++ K +H + E+K
Sbjct: 195 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 254
Query: 181 AVPKELSP------------GPSRNQLGTHNYGLSRVSSFLNGYTQSYNP 218
A+ KE G +R + G G +VS G+ SY P
Sbjct: 255 AMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSR-RGGHQNSYKP 303
Score = 196 (74.1 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 42/116 (36%), Positives = 70/116 (60%)
Query: 71 DGRTVEAKKA---VPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFKKY 125
+G + EA+ A +++++ + N+S H A+ + K+F+GGL+ T+ D K Y
Sbjct: 55 EGGSTEAEGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDY 114
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
F +FG + D + D T R RGFGF+ + E+VDKV+ + H+LNGK+++ KRA
Sbjct: 115 FSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 170
Score = 49 (22.3 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 22/78 (28%), Positives = 32/78 (41%)
Query: 184 KELSPGPSRNQLGTHNYGLSR----VSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
KE P + HN GLS+ V+ Y Q S GG+ R GR G +
Sbjct: 229 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQ---Q 285
Query: 240 SGFTTIGPGYGMGLNFEP 257
SG+ + G +++P
Sbjct: 286 SGYGKVSRRGGHQNSYKP 303
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 87/255 (34%), Positives = 134/255 (52%)
Query: 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64
L KLFIG +S++T +D LR++ + + + + V+M+D R+ GFGF+ ++ + +
Sbjct: 23 LTKLFIGYLSFETTDDSLREHSEKW-TLTDCVVMRDPLFERSSGFGFVTYSCVEEVDAAM 81
Query: 65 MQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDF 122
+ H +DGR V +AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 82 CARPHKVDGRVV-GPRAVSRED---------SV--KPGTHLTVKKIFVGGVREDREEYNL 129
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
K YF+++G I + VM D + + RGF F+T+D + VDK+ ++ +H +NG E+K+ +
Sbjct: 130 KDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQKYHTINGHNCEMKKVL 189
Query: 183 PKE--LSPGPSRNQLGTHNYGLSRVSSFLNGYTQSY---NPSSVGGYGLRIDGRYGPVTI 237
K+ S G R + G + R +F G S N S GGY R G YG
Sbjct: 190 SKQGMQSAGSQRGRGGGSGNLMGRGGNFEGGGGNSGHGGNFSGRGGYSSR--GGYGS--- 244
Query: 238 GRSGFTTIGPGYGMG 252
G G+ G GYG G
Sbjct: 245 GGLGYVNQGGGYGGG 259
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 81/240 (33%), Positives = 118/240 (49%)
Query: 56 DPAVAERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGG 112
DP V+ + H +DGR ++ K PR Q + R P +K KIFVGG
Sbjct: 3 DPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGG 62
Query: 113 LASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELN 172
+ E++ ++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++
Sbjct: 63 IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIM 122
Query: 173 GKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLR----- 227
GK VEVKRA P++ S + Q G +G V + NG+ P+ GYG +
Sbjct: 123 GKKVEVKRAEPRD-SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVP 181
Query: 228 ---IDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGG---GANLSPNLSYGRGLNP 281
G YGP GR P ++ P P G G P S+G G P
Sbjct: 182 AGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPP 241
Score = 176 (67.0 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 38/82 (46%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP-AVAERVVM 65
K+F+GGI + E LR+YF+ FG V E V++ D R RGFGFI F D +V + V M
Sbjct: 57 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 116
Query: 66 QKHMIDGRTVEAKKAVPRDDQN 87
H I G+ VE K+A PRD ++
Sbjct: 117 HFHDIMGKKVEVKRAEPRDSKS 138
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 99/301 (32%), Positives = 147/301 (48%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T +D LR++F+ G + + V+M+D T +RGFGF+ ++ +
Sbjct: 30 QLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAA 89
Query: 64 VMQ-KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
+ H +DGR VE KKAV R+D +++ H KK FVGG+ E +
Sbjct: 90 MCAWLHKVDGRVVEPKKAVSRED-SVK----LGAH-----LMVKKTFVGGIKEDTEEYNL 139
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
K YF+++G I + M + + R RGF F + + VDK++++ H +NG EVK+A+
Sbjct: 140 KDYFEKYGKI-ETEGMENRQSGR-RGFAFAIFGDHD-VDKIVVQKHHTINGHNCEVKKAL 196
Query: 183 PK-EL-SPGPSRNQLGTHNYGLSRVSSF--LNGYTQSYNPS------SVGGY-GLRIDG- 230
K E+ S G R + G + + +F GY S GGY G+ DG
Sbjct: 197 SKLEMHSAGSQRGRGGGYGNFMGCGGNFGGKGGYGGGGGGSRGSFGGGDGGYNGVGGDGG 256
Query: 231 RYG--PVTIGRSGFTTIGPGYG-MGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNS 287
YG P R G+ GPGYG G GGG GRG G +
Sbjct: 257 NYGGGPGYSSRGGYGGGGPGYGNQGGGSGGGGGGGSGGGGREGRGRGGGRGGGEGNGSDG 316
Query: 288 N 288
N
Sbjct: 317 N 317
Score = 190 (71.9 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 50/146 (34%), Positives = 78/146 (53%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ + +++F + G +TD VVM D T+ RGFGF+TY E VD
Sbjct: 28 PEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVD 87
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGY---TQSYNP 218
+ H+++G++VE K+AV +E S +LG H L +F+ G T+ YN
Sbjct: 88 AAMCAWLHKVDGRVVEPKKAVSREDSV-----KLGAH---LMVKKTFVGGIKEDTEEYNL 139
Query: 219 SSV-GGYG-LRIDGRYGPVTIGRSGF 242
YG + +G + GR GF
Sbjct: 140 KDYFEKYGKIETEGMENRQS-GRRGF 164
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 92/278 (33%), Positives = 136/278 (48%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T + LR++F+ +G + + V+M+D +RGF F+ ++ V
Sbjct: 35 QLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAV 94
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESD 121
+ + H + G VE K+AV R+D I PG +KIFVGG+ E +
Sbjct: 95 MCARPHKVVGCVVEPKRAVSREDSII-----------PGAHLMVEKIFVGGIKEDTEEYN 143
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK-R 180
+ YF+++G I + VM D + + RGF F+T+D+ + VDKV+ K +H +NG EVK +
Sbjct: 144 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQK-YHTVNGHNCEVKEQ 202
Query: 181 AVPKELSP----GPSRNQLGTH-NYG-LSRVSSFLNGYTQSYNPSSVGGYGLRID-GRYG 233
+P S G S N +G N+G G SY G G D G G
Sbjct: 203 EMPSAGSQRGHGGGSGNFMGRGGNFGGRGGYGGGGGGSRGSYGGGDGGFNGFGGDAGHGG 262
Query: 234 PVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSP 271
R G+ GPGYG N GGG P
Sbjct: 263 RRGYSRGGYGGGGPGYG-------NQDGGSGGGGGGEP 293
Score = 175 (66.7 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 37/95 (38%), Positives = 57/95 (60%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++G +TD VVM D + RGF F+TY
Sbjct: 28 HDPKEPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSC 87
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELS--PG 189
E V V+ H++ G +VE KRAV +E S PG
Sbjct: 88 VEEVGAVMCARPHKVVGCVVEPKRAVSREDSIIPG 122
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 297 (109.6 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 62/179 (34%), Positives = 115/179 (64%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMK--DRATGRARGFGFIVFADPAVAERV 63
GK+F+GG+ ++ + L+DYF FGEV E++++K ++A+ ++RGFGF+ F DP+V + V
Sbjct: 106 GKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKAS-KSRGFGFVTFVDPSVIDEV 164
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123
++ H I+G+ VE ++A+P+++ + P + +K+FVGGL +T DF
Sbjct: 165 ILINHSIEGKNVEIRRAIPKEEMTEE----------P---KKQKLFVGGLPKHITSDDFN 211
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL-KTFHELNGKMVEVKRA 181
YF +FG I++ ++ + N +GFGFI + +E+V++++L + H + GK V+++ A
Sbjct: 212 NYFSEFGEISEYNLLTEKNGTI-KGFGFICF-KDESVNEIILNEQQHIILGKRVDIRIA 268
Score = 193 (73.0 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 46/142 (32%), Positives = 71/142 (50%)
Query: 84 DDQNIQNRNNSSIHGSP---GPARTKKIFVGGLASTVTESDFKKYFDQFGIITD-VVVMY 139
D +I+N NN+ GS + + KIFVGGL T + K YF FG + + +V+
Sbjct: 81 DKNHIENNNNNDEEGSNLSLPKSISGKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKA 140
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE-LSPGPSRNQLGTH 198
+ RGFGF+T+ +D+V+L H + GK VE++RA+PKE ++ P + +L
Sbjct: 141 TEKASKSRGFGFVTFVDPSVIDEVILIN-HSIEGKNVEIRRAIPKEEMTEEPKKQKLFVG 199
Query: 199 NYGLSRVSSFLNGYTQSYNPSS 220
S N Y + S
Sbjct: 200 GLPKHITSDDFNNYFSEFGEIS 221
Score = 45 (20.9 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 165 LKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGG 223
L H NG ++P SPG N++ +N + + N T + SS GG
Sbjct: 330 LSPSHLNNGNQAS-SNSIPPSNSPGSPVNEMNYNNCNNNNSNG--NRTTGTIISSSAGG 385
Score = 40 (19.1 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 188 PGPSRNQLGTHNYGLSRVSSFLNGYTQS 215
P PS +Q H S ++ + Y QS
Sbjct: 460 PNPSTHQTNAHQQSTSSSTTSSSKYYQS 487
>UNIPROTKB|F1N7Z3 [details] [associations]
symbol:F1N7Z3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00696055 EMBL:DAAA02008074
Ensembl:ENSBTAT00000056782 Uniprot:F1N7Z3
Length = 268
Score = 228 (85.3 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 60/189 (31%), Positives = 99/189 (52%)
Query: 70 IDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQF 129
+DGR V+ K+AV R+D S G+ P KK+FVGG+ E + YF+Q+
Sbjct: 58 VDGRVVKPKRAVSRED--------SQRPGAHLPV--KKVFVGGIKEDTEEHHLRDYFEQY 107
Query: 130 GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK-ELSP 188
G + ++ D + + RGF F+T+D ++VDK++++ +H NG EV++A+ K E++
Sbjct: 108 GKTEVIEIITDQGSGKKRGFVFVTFDDHDSVDKIVIQKYHTGNGLNCEVRKALSKQEMAS 167
Query: 189 GPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPVTIGRSGFT 243
S R + G+ ++G R + + + N S GG+G R G Y G +GF
Sbjct: 168 ASSSQRGRSGSEDFGGGRGGGLGGSDNFGRGGNFSGRGGFGGSRGGGGYAGSGDGYNGFG 227
Query: 244 TIGPGYGMG 252
G +G G
Sbjct: 228 NDGSNFGGG 236
Score = 162 (62.1 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 36/96 (37%), Positives = 57/96 (59%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64
K+F+GGI DT E LRDYF+ +G EV+E I+ D+ +G+ RGF F+ F D +++V
Sbjct: 85 KVFVGGIKEDTEEHHLRDYFEQYGKTEVIE--IITDQGSGKKRGFVFVTFDDHDSVDKIV 142
Query: 65 MQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGS 99
+QK H +G E +KA+ + + + + GS
Sbjct: 143 IQKYHTGNGLNCEVRKALSKQEMASASSSQRGRSGS 178
Score = 104 (41.7 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFI G+S++T + LR F+ +G + + V+ +D R G G ER
Sbjct: 5 QLQKLFIRGLSFETTHEGLRSRFEQWGTLTDCVVRRDPNAKRHGGGG----------ERK 54
Query: 64 VMQKHMIDGRTVEAKKAVPRDD 85
Q +DGR V+ K+AV R+D
Sbjct: 55 ATQ---VDGRVVKPKRAVSRED 73
Score = 51 (23.0 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 20/49 (40%), Positives = 21/49 (42%)
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGN 286
GRSG G G G GL N G G N S GRG FGG+
Sbjct: 174 GRSGSEDFGGGRGGGLGGSDNF----GRGGNFS-----GRG---GFGGS 210
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 69/185 (37%), Positives = 102/185 (55%)
Query: 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64
L K+FIGG+S T + LR +F FG V +AV+++D + +RGFGF+ + DP E V
Sbjct: 31 LRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQ 90
Query: 65 MQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGS----PGPARTKKIFVGGLASTVTE 119
+ H ID + VE K A+PR D + S+ GS G +K+IF+GGL E
Sbjct: 91 RARPHTIDNKIVETKHALPRQDFK-RGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDE 149
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
+ ++YF QFG + V ++ D T R R FGF+ + + +K L H + +VEVK
Sbjct: 150 NIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVK 209
Query: 180 RAVPK 184
R+ K
Sbjct: 210 RSTQK 214
Score = 173 (66.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
G +KIF+GGL++ T + +F QFGI+ D VV+ D + RGFGF+TY ++V
Sbjct: 27 GYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSV 86
Query: 161 DKVLLKTFHELNGKMVEVKRAVPKE 185
+ V H ++ K+VE K A+P++
Sbjct: 87 EIVQRARPHTIDNKIVETKHALPRQ 111
Score = 162 (62.1 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 37/105 (35%), Positives = 58/105 (55%)
Query: 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAER 62
M ++F+GG+ +E+ +R+YF FG V ++ DR TGR R FGF+ F DP+ AE+
Sbjct: 133 MNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEK 192
Query: 63 VVM-QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGS---PGPA 103
+ +KH I VE K++ + D+ + SS+ P PA
Sbjct: 193 ALAPRKHWILQTLVEVKRSTQKADRRFRFPIFSSVRAGYIPPQPA 237
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 86/284 (30%), Positives = 139/284 (48%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S+ T + LR +F+ + + + V M+D T R+RGFGF+ + +
Sbjct: 3 QLRKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAA 62
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DG VE K+AV R+D SPG T K+I VGG+ E
Sbjct: 63 MNARPHKVDGSFVEPKRAVSREDSQ-----------SPGAHLTVKEISVGGIKEDTEEHH 111
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+ +G I + +M D + + + F F+T+D ++VDK++++ +H +NG E
Sbjct: 112 LRDYFEHYGKIEVIEIMTDRGSGK-KEFAFVTFDDHDSVDKIVIQKYHTVNGHNCETVAL 170
Query: 182 VPKELSPGPS--RNQLGTHNYGLSRVSSFLNGYTQSYNPSSVG----GYGLRIDGRYGPV 235
+E++ S R + G+ N+G + G ++ Y G G G G Y
Sbjct: 171 SKQEMASASSSQRGRSGSGNFG-GGGPGYCEG-SRGYGSGGQGDGNQGSGYGGSGSYDRY 228
Query: 236 TIGRSG--FTTIGPGYGMGLNF-EPNLSPSHGGGANLSPNLSYG 276
G G F G G +G F +P +GG ++ S SYG
Sbjct: 229 NNGGGGGGFGA-GSGSNLGQFFAKPRKQGGYGGSSSSS---SYG 268
Score = 197 (74.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T + +F+Q+ +TD V M D NT+R RGFGF+TY + E VD
Sbjct: 1 PEQLRKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVD 60
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G VE KRAV +E S P
Sbjct: 61 AAMNARPHKVDGSFVEPKRAVSREDSQSP 89
Score = 46 (21.3 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 17/61 (27%), Positives = 22/61 (36%)
Query: 230 GRYGPVTIGRSG--FTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNS 287
GR G G G + GYG G + N +GG + + G G G S
Sbjct: 184 GRSGSGNFGGGGPGYCEGSRGYGSGGQGDGNQGSGYGGSGSYDRYNNGGGGGGFGAGSGS 243
Query: 288 N 288
N
Sbjct: 244 N 244
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 96/288 (33%), Positives = 144/288 (50%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S+ T ++ LR +F+ +G + + V M+D +RGFGF+ + +
Sbjct: 12 QLWKLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGFVTYTTVEELDAA 70
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DG VE K+AV R+D PG T KKIFVG V E
Sbjct: 71 MNARPHKVDGGVVEPKRAVSREDSP-----------RPGAHLTVKKIFVG-----VKEDT 114
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+F+Q+G I + +M D + + RGF F+T+D ++VD ++++ +H +NG EV++A
Sbjct: 115 EGHHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVIQKYHTVNGHNCEVRKA 174
Query: 182 VPKELSPGPSRNQLG-THNY-GLSRVSSFLNGY-TQSYNPSSVGGYGLRIDGRYGPVTIG 238
+ + S +Q G + Y G SR GY TQ G Y DG G G
Sbjct: 175 LSNQELASASSSQRGCSPGYSGGSRGYGSGQGYGTQGSGYGGRGSYDSYNDG--G----G 228
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLS-YGRGLNPSFGG 285
R GF G G G NF S + G N + LS +G+ +FGG
Sbjct: 229 RGGF-----GGGSGSNFGGGGSYNDFG--NYNNQLSNFGQMKGGNFGG 269
Score = 184 (69.8 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 37/89 (41%), Positives = 57/89 (64%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + K+F+GGL+ T+ + +F+Q+G +TD V M D N + RGFGF+TY + E +D
Sbjct: 10 PEQLWKLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGFVTYTTVEELD 68
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G +VE KRAV +E SP P
Sbjct: 69 AAMNARPHKVDGGVVEPKRAVSREDSPRP 97
Score = 50 (22.7 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 26/90 (28%), Positives = 38/90 (42%)
Query: 199 NYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPN 258
N L+ SS G + Y+ S GYG G+ G+ T G GYG +++
Sbjct: 177 NQELASASSSQRGCSPGYSGGS-RGYG---SGQ---------GYGTQGSGYGGRGSYD-- 221
Query: 259 LSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
S + GGG +G G +FGG +
Sbjct: 222 -SYNDGGGRG-----GFGGGSGSNFGGGGS 245
Score = 40 (19.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 210 NGYTQSYNPSSVGGYGLRIDGRYG 233
N ++ G +G RI G YG
Sbjct: 253 NNQLSNFGQMKGGNFGGRISGPYG 276
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 85/284 (29%), Positives = 144/284 (50%)
Query: 4 ELGKLFIGGISWD-TNED-RLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+L KLF+GG+S++ T E L +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVD 71
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTE 119
+ + H + GR VE K+A +D Q PG T KKIFVGG+ E
Sbjct: 72 AAMNARPHKVGGRAVEPKRAGSKDSQR------------PGAHLTMKKIFVGGVKEDTEE 119
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
+ Y +Q G T+V + R F F+T+D+ +VDK++++ + +NG EV+
Sbjct: 120 HRLRDYLEQNGK-TEVTEITTDRGSGKRDFAFVTFDN--SVDKIVIQKYSTVNGHNCEVR 176
Query: 180 RAVPK-ELSPGPS--RNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVT 236
+A+ K E++ S R + G+ N+G + + + + + G Y ++ +GP+
Sbjct: 177 KALSKQEMASASSSQRGRSGSRNFGYKGFGNDRSNFGGGGSYNDFGNYNIQ-SSNFGPMK 235
Query: 237 IGRSGFTTIGPGYGMGLNF-EPNLSPSHGGGANLSPNLSYGRGL 279
G G GP G G +F +P +GG ++ S G+ L
Sbjct: 236 GGNFGGGGSGPYVGGGQDFAKPRNQGGYGGSSSSSSTHVCGQKL 279
Score = 188 (71.2 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 44/99 (44%), Positives = 60/99 (60%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVT-ES-DFKKYFDQFGIITDVVVMYDHNTQRPRGFGF 151
S S P + +K+FVGGL+ T ES +F+Q+G +TD VVM D NT+R RGFGF
Sbjct: 2 SKSESSKEPEQLQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGF 61
Query: 152 ITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELS-PG 189
+TY + E VD + H++ G+ VE KRA K+ PG
Sbjct: 62 VTYATVEEVDAAMNARPHKVGGRAVEPKRAGSKDSQRPG 100
Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 37/116 (31%), Positives = 63/116 (54%)
Query: 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAER 62
+ + K+F+GG+ DT E RLRDY + G+ I DR +G+ R F F+ F D +V ++
Sbjct: 103 LTMKKIFVGGVKEDTEEHRLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTF-DNSV-DK 159
Query: 63 VVMQKHM-IDGRTVEAKKAVPRDDQ-----NIQNRNNSSIHGSPGPARTKKIFVGG 112
+V+QK+ ++G E +KA+ + + + + R+ S G G + F GG
Sbjct: 160 IVIQKYSTVNGHNCEVRKALSKQEMASASSSQRGRSGSRNFGYKGFGNDRSNFGGG 215
>UNIPROTKB|F1P645 [details] [associations]
symbol:LOC607505 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03007023 Ensembl:ENSCAFT00000000618 OMA:EMARASP
Uniprot:F1P645
Length = 317
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 93/295 (31%), Positives = 148/295 (50%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E +L KLFIGG+S++T ++ LR +F+ +G + + V+ ++ R+RGFG + P E
Sbjct: 9 EPQLRKLFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVV----PRHLE 64
Query: 62 RVVMQKHMIDGR-TVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTE 119
V ++ R T E+ K Q +R +S PG T KKIFVGG+ E
Sbjct: 65 EVAAARNPGPTRWTEESWK------QRAASREDSQ---RPGAHLTVKKIFVGGIKGDAEE 115
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
+ F+Q G + +M D + + RGF F+T+D ++VDK++++ +H +NG EV+
Sbjct: 116 HHLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHGCEVR 175
Query: 180 RAVPK-ELS-PGPS-RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYG 233
+A+ K E++ PS R + G+ N+G R + + + N S GG+G R G YG
Sbjct: 176 KALSKQEMARASPSQRGRSGSGNFGGGRGGGVGGNDSFGRGGNFSGRGGFGGSRGGGGYG 235
Query: 234 PVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
GF +G G ++ G N S N +G N FGG S+
Sbjct: 236 GSGDDCHGFGNDRSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 283
Score = 113 (44.8 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 99 SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
SP + +K+F+GGL+ T+ + +F+++G + D VV + N +R RGFG + EE
Sbjct: 6 SPEEPQLRKLFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVVPRHLEE 65
Score = 70 (29.7 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 28/82 (34%), Positives = 37/82 (45%)
Query: 198 HNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF-E 256
H +G R S+F G SYN G Y + +GP+ G G + GP G G F +
Sbjct: 242 HGFGNDR-SNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYFAK 295
Query: 257 PNLSPSHGGGANLSPNLSYGRG 278
P + GG S + SYG G
Sbjct: 296 PR---NQGGCGGSSSSSSYGSG 314
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 65/183 (35%), Positives = 108/183 (59%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L +LFIGG+S++T ED LR+ F+ G + + V+M+D + FGF+ ++ +
Sbjct: 5 QLRRLFIGGLSFETIEDSLREGFE-MGTLADCVVMRD-----PQSFGFVTYSCVEEVDAA 58
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
+ + H +DGR VE K+AV R+D S+ PG T KIFVGG+ E +
Sbjct: 59 MCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKIFVGGIKEDAEEYNL 107
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VDK+++ +H +NG EV++A+
Sbjct: 108 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVN-YHTINGHNCEVRKAL 166
Query: 183 PKE 185
K+
Sbjct: 167 SKQ 169
Score = 191 (72.3 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 35/92 (38%), Positives = 57/92 (61%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GGI D E LRDYF+ +G++ +M+DR +G+ RGF F+ F D +++V+
Sbjct: 92 KIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVN 151
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHG 98
H I+G E +KA+ + Q +Q+ + S HG
Sbjct: 152 YHTINGHNCEVRKALSK--QEMQSAGSQSGHG 181
Score = 150 (57.9 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 33/90 (36%), Positives = 53/90 (58%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +++F+GGL+ E ++ F+ G + D VVM D P+ FGF+TY E VD
Sbjct: 3 PEQLRRLFIGGLSFETIEDSLREGFEM-GTLADCVVMRD-----PQSFGFVTYSCVEEVD 56
Query: 162 KVLLKTFHELNGKMVEVKRAVPKE--LSPG 189
+ H+++G++VE KRAV +E + PG
Sbjct: 57 AAMCARPHKVDGRVVEPKRAVSREDSVKPG 86
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 89/292 (30%), Positives = 145/292 (49%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFI G+S++ ++ LR +F+ +G + + V+M+D T +RGFG + D A+ R
Sbjct: 12 QLQKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAMEEVDAAMNSRP 71
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDF 122
+ R +E K+AV ++D PG T KKIFVGG+ E
Sbjct: 72 CK----VGRRVLEPKRAVSQEDSP-----------RPGVLLTVKKIFVGGIKEDTEEHHL 116
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + M D + + RGF F+T+D ++VDK++++ +H NG V++ +
Sbjct: 117 RDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHAANGHNRVVRKTL 176
Query: 183 PK-ELSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGY-GLRIDGRYGPVT 236
K E++ S R + G+ N+G F + + + N S GG+ G R G G
Sbjct: 177 WKQEMASASSSQRGRSGSGNFGGGCGGGFGGNDNFGRGGNFSGQGGFAGSRGGGGSGGSG 236
Query: 237 IGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G + F G +G G ++ G N S N +G + FGG S+
Sbjct: 237 DGYNEFGNDGSNFGGGRSYN-----DFGNYNNQSSNFGPMKGGH--FGGRSS 281
Score = 147 (56.8 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 33/89 (37%), Positives = 54/89 (60%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+ GL+ +T+ + +F+Q+G +TD VVM D NT+ RGFG + E VD
Sbjct: 10 PEQLQKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAM-----EEVD 64
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ ++ +++E KRAV +E SP P
Sbjct: 65 AAMNSRPCKVGRRVLEPKRAVSQEDSPRP 93
Score = 69 (29.3 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 27/83 (32%), Positives = 39/83 (46%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G +SYN G Y + +GP+ G G + GP YG G +
Sbjct: 238 GYNEFG-NDGSNFGGG--RSYN--DFGNYNNQ-SSNFGPMKGGHFGGRSSGP-YGGGDQY 290
Query: 256 EPNLSPSHGGGANLSPNLSYGRG 278
P + GG S + SYG G
Sbjct: 291 FAK--PQNQGGCGGSRSSSYGSG 311
Score = 49 (22.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 189 GPSRNQLGTH--NYGLSR-VSSFLNGYTQSYN--PSSVGGYGLRIDGRYG 233
G N+ G N+G R + F N QS N P G +G R G YG
Sbjct: 236 GDGYNEFGNDGSNFGGGRSYNDFGNYNNQSSNFGPMKGGHFGGRSSGPYG 285
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 263 (97.6 bits), Expect = 9.2e-26, Sum P(2) = 9.2e-26
Identities = 60/163 (36%), Positives = 96/163 (58%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++ +D LR++F+ +G + + V+M+D T R+R F F+ ++ V
Sbjct: 11 QLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAA 70
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ Q H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 71 MCAQPHNVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 119
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ YF+++G I + VM D + + R F+T+D + VDK++
Sbjct: 120 LRDYFEKYGKIKTMEVMEDRLSGKERLL-FVTFDDHDTVDKIV 161
Score = 192 (72.6 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 44/124 (35%), Positives = 69/124 (55%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++G +TD VVM D T+R R F F+TY
Sbjct: 4 HDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSC 63
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGY---T 213
+ VD + H ++G++VE KRAV +E S P G H L+ F+ G T
Sbjct: 64 VKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKP-----GAH---LTVKKIFVGGIKEDT 115
Query: 214 QSYN 217
+ YN
Sbjct: 116 EEYN 119
Score = 45 (20.9 bits), Expect = 9.2e-26, Sum P(2) = 9.2e-26
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 222 GGYGLRIDGRYGPVTIGRSGFTTIGPGYGMG 252
GG G GR G G +G+ G GYG G
Sbjct: 165 GGSG-NFMGRGGNFGRGGNGYGNQGGGYGGG 194
Score = 42 (19.8 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 227 RIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGG 266
+I GR G G F G +G G N N +GGG
Sbjct: 159 KIVGRGG----GSGNFMGRGGNFGRGGNGYGNQGGGYGGG 194
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 94/298 (31%), Positives = 140/298 (46%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S+ T E+ LR +F+ + ++ V+M+D T R+RG GF + +
Sbjct: 13 QLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAA 72
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIF-VGGLASTVTESD 121
+ + H +DGR V R+D PG T KIF V G+ E
Sbjct: 73 MNARPHKVDGRVVS------REDSQ-----------RPGAHLTVKIFIVSGIKEDTEEHH 115
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+ I + +M D +++ R F F+T+D ++VDK+ ++ +H +NG EV++A
Sbjct: 116 LRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQKYHTVNGHNCEVRKA 175
Query: 182 VPK-ELSPGPS--RNQLGTHNY-----GLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
+ K E++ S R + G+ Y G S S Q Y S GYG G Y
Sbjct: 176 LSKQEMASASSSQRGESGSGKYEGVGPGYSGGSRVCGSGGQDYGNGS--GYGG--SGSYD 231
Query: 234 PVTIG--RSGFTTIGPGYGMGLNFEPNLSPSHGGGAN-LSPNLSYGRGLNPSFGGNSN 288
G R F G G G NF S + G N S N +G N FGG S+
Sbjct: 232 SYNNGGDRGSF-----GGGSGSNFGDGGSYNDFGNYNNQSSNFRPMKGAN--FGGRSS 282
Score = 151 (58.2 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ TE + +F+Q+ + VVM D NT+R RG GF TY + E +D
Sbjct: 11 PEQLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMD 70
Query: 162 KVLLKTFHELNGKMV 176
+ H+++G++V
Sbjct: 71 AAMNARPHKVDGRVV 85
Score = 39 (18.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 383 GSGAVGYGRNSMTSVPPVSSTKGSYDVAYGDIYESGSFYGD 423
G+G+ GYG + +GS+ G + G Y D
Sbjct: 219 GNGS-GYGGSGSYDSYNNGGDRGSFGGGSGSNFGDGGSYND 258
Score = 38 (18.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 210 NGYTQSYNPSSVGGYGLRIDGRYG 233
N + ++ P +G R G YG
Sbjct: 263 NNQSSNFRPMKGANFGGRSSGPYG 286
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 85/292 (29%), Positives = 138/292 (47%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T + LR +F+ G + + V M+D T +RGFGF+ +A +
Sbjct: 26 QLQKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAA 85
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
+ H +D R VE K+AV R+D H + ++ + E
Sbjct: 86 TNARPHKVD-RVVEPKRAVSREDSQ-----RPGAHLTMKKKEEEEEEEDD--NNTEEYHL 137
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A+
Sbjct: 138 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 197
Query: 183 PKELSPGPSRNQLGT---HNYGLSRVSSF--LNGYTQSYNPSSVGGY-GLRIDGRYGPVT 236
K+ S + N+G + + N S GG+ G R G YG
Sbjct: 198 SKQEMASASAKEAKVVLERNFGGGGGGGVGGNDNFGSGGNFSGQGGFDGSRGGGGYGGSG 257
Query: 237 IGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G + F G +G G + G N S N +G N FGG S+
Sbjct: 258 DGYNRFGNDGSNFGGGGSCN-----DFGNYNNQSSNFGPIKGGN--FGGTSS 302
Score = 185 (70.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 40/97 (41%), Positives = 60/97 (61%)
Query: 95 SIHGSP-GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S+ SP P + +K+F+GGL+ T + +F+Q G++TD V M D NT+ RGFGF+T
Sbjct: 16 SMSESPKDPEQLQKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVT 75
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
Y + E VD H+++ ++VE KRAV +E S P
Sbjct: 76 YATMEEVDAATNARPHKVD-RVVEPKRAVSREDSQRP 111
Score = 62 (26.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 27/76 (35%), Positives = 34/76 (44%)
Query: 210 NGYTQSYNP-SSVGGYGLRID-GRY-------GPVTIGRSGFTTIGPGYGMGLNFEPNLS 260
+GY + N S+ GG G D G Y GP+ G G T+ GP G G F
Sbjct: 258 DGYNRFGNDGSNFGGGGSCNDFGNYNNQSSNFGPIKGGNFGGTSSGPYGGGGQYFA---K 314
Query: 261 PSHGGGANLSPNLSYG 276
P + GG S + SYG
Sbjct: 315 PRNQGGYGGSSSSSYG 330
Score = 39 (18.8 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 199 NYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYG 233
N+G + + G P + GGYG YG
Sbjct: 296 NFGGTSSGPYGGGGQYFAKPRNQGGYGGSSSSSYG 330
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 74/231 (32%), Positives = 125/231 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L +LFI G++++T + LR +F+ +G +++ V+M D T +R FGF+++A +
Sbjct: 12 QLWRLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAA 71
Query: 64 V-MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
V ++ H ++ R + K AV R+D R + + G KK FVGG+ E
Sbjct: 72 VNVRPHKVN-RIGKPKMAVSREDSQ---RPGAHLTG-------KKTFVGGIKEDTEEHHL 120
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T D +++DK++++ H +NG EV+RA+
Sbjct: 121 RHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQKQHTVNGHNYEVRRAL 180
Query: 183 PKE--LSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGY-GLRIDG 230
K+ S SR G+ N+ +F +GY S N GY G DG
Sbjct: 181 SKQEMASASTSRRSKGSGNFDGGCGGNF-SGYGGSGN-----GYIGFSNDG 225
Score = 143 (55.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + ++F+ GL T + +F Q+GI+ D VVM D NT+ R FGF+ Y + E VD
Sbjct: 10 PKQLWRLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNY 200
+ H++N ++ + K AV +E S P + G +
Sbjct: 70 AAVNVRPHKVN-RIGKPKMAVSREDSQRPGAHLTGKKTF 107
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 63/129 (48%), Positives = 84/129 (65%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T+ D LRDYF FGE+ E ++M+D T R+RGFGF+ FADPA ++V+ Q
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 67 KHM-IDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGL-ASTVTESDFKK 124
H +D +T++ K A PR Q RTKKIFVGGL A+TV E D K+
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVE-DVKQ 124
Query: 125 YFDQFGIIT 133
YF+QFG ++
Sbjct: 125 YFEQFGKVS 133
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 43/126 (34%), Positives = 65/126 (51%)
Query: 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+F+GGL+ + + YF +FG I + +VM D T+R RGFGF+T+ +VDKVL
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 165 LKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSR--VSSFLNGYTQSYNPSSVG 222
+ HEL+ K ++ K A P+ P GLS V + Y + + S G
Sbjct: 76 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVSAG 135
Query: 223 GYGLRI 228
GL +
Sbjct: 136 SPGLSL 141
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 65/150 (43%), Positives = 91/150 (60%)
Query: 56 DPAVAERVVMQ-KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLA 114
D A ++V+ Q +H +D +T++ K A PR Q RTKKIFVGGL+
Sbjct: 2 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLS 49
Query: 115 STVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
T D K+YF+QFG + D ++M+D T R RGFGF+T++SE+ V+KV FHE+N K
Sbjct: 50 VNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNK 109
Query: 175 MVEVKRAVPKE-LSP-GPSRNQLGTHNYGL 202
MVE K+A PKE +SP G +R + YG+
Sbjct: 110 MVECKKAQPKEVMSPTGSARGRSRVMPYGM 139
Score = 172 (65.6 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 32/79 (40%), Positives = 53/79 (67%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-M 65
K+F+GG+S +T + ++ YF+ FG+V +A++M D+ T R RGFGF+ F + E+V +
Sbjct: 42 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 101
Query: 66 QKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 102 HFHEINNKMVECKKAQPKE 120
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 84/267 (31%), Positives = 129/267 (48%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
EL KLFI G+S++T ++ L +F+ G+ V+M+ T +RGFGF+ P
Sbjct: 8 ELRKLFIRGLSFETIDESLSSHFE-MGKAHRLVVMRVPNTKHSRGFGFVT--KPWWRSLA 64
Query: 64 VM--QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESD 121
M + H +D R VE K+ V R D R ++ + KKIFVGG+ E
Sbjct: 65 AMNARPHKVDERVVEPKRDVSRGDSQ---RPHAHL-------TVKKIFVGGIQEGTEEHH 114
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ F+Q+G I D+ +M D + + RGF F T+D ++VDK++++ +H +NG EV+ A
Sbjct: 115 LRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREA 173
Query: 182 VPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGR-YGPVTIGRS 240
+ K+ S + G YG S NG+ + + GG G G YG +
Sbjct: 174 LSKQEMASASSSGGG---YGGS--GDGYNGFGKKHRGYGSGGQGYGNQGSGYGG-SGSYD 227
Query: 241 GFTTIGPGYGMGLNFEPNLSPSHGGGA 267
+ G G G G N GGG+
Sbjct: 228 SYNNCGSGGGFGGGSGSNFG---GGGS 251
Score = 100 (40.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 99 SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
S P +K+F+ GL+ + +F+ G +VVM NT+ RGFGF+T
Sbjct: 3 SKSPEELRKLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVTKPWWR 61
Query: 159 AVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
++ + + H+++ ++VE KR V + S P
Sbjct: 62 SLAAMNARP-HKVDERVVEPKRDVSRGDSQRP 92
Score = 59 (25.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 219 SSVGGYGLRIDGRYG------PVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPN 272
SS GGYG DG G G G+ G GYG +++ + GGG
Sbjct: 184 SSGGGYGGSGDGYNGFGKKHRGYGSGGQGYGNQGSGYGGSGSYDSYNNCGSGGGFGGGSG 243
Query: 273 LSYGRGLNPSFGGNSN 288
++G G + + GN N
Sbjct: 244 SNFGGGGSYNDFGNYN 259
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 77/230 (33%), Positives = 118/230 (51%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
EL KLFI G+S++T ++ L +F+ G+ V+M+ T +RGFGF+ P
Sbjct: 24 ELRKLFIRGLSFETIDESLSSHFE-MGKAHRLVVMRVPNTKHSRGFGFVT--KPWWRSLA 80
Query: 64 VM--QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESD 121
M + H +D R VE K+ V R D R ++ + KKIFVGG+ E
Sbjct: 81 AMNARPHKVDERVVEPKRDVSRGDSQ---RPHAHL-------TVKKIFVGGIQEGTEEHH 130
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ F+Q+G I D+ +M D + + RGF F T+D ++VDK++++ +H +NG EV+ A
Sbjct: 131 LRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREA 189
Query: 182 VPK-ELSPGPSRNQLGT----HNYGLSRVSSFLNGYTQSYNP-SSVGGYG 225
+ K E++ SR G YG +G SYN S GG+G
Sbjct: 190 LSKQEMASASSRKHRGYGSGGQGYGNQGSGYGGSGSYDSYNNCGSGGGFG 239
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 173 (66.0 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 48/170 (28%), Positives = 73/170 (42%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
KK+FVGGL+ E K+Y FG I ++ + D T RGF FITY E+ V K+L
Sbjct: 94 KKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLE 153
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLG-----------THNYGLSRVSSFLNGYTQ 214
+H++ E+K A PKE+ + Q G + +G + ++ +
Sbjct: 154 NRYHQIGSGKCEIKVAEPKEIYRQQQQQQKGGRSAAAGERGGSRGHGQGQGQNWNQRFNH 213
Query: 215 SYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPG-YGMGLNFEPNLSPSH 263
Y+ + G Y G G G+T G YG G + +H
Sbjct: 214 CYDQGN-GNYNSAYGGDQNYSDYGSYGYTEFNYGNYGYGQGYADYRGGNH 262
Score = 163 (62.4 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV- 64
GK+FI G+SWDT++ L FGEV++ +I D TGR+RGFGF++F + A ++V+
Sbjct: 16 GKMFIRGLSWDTSKKDL-----TFGEVVDCIIETDPVTGRSRGFGFVLFKEAASVDKVLE 70
Query: 65 MQKHMIDGRTVEAKKA 80
+++H +D ++ K+A
Sbjct: 71 LKEHKLDSMLIDPKRA 86
Score = 141 (54.7 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 34/103 (33%), Positives = 52/103 (50%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GG+S DT E+++++Y AFGE+ + D T RGF FI + D ++++
Sbjct: 95 KVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLEN 154
Query: 67 K-HMIDGRTVEAKKAVP----RDDQNIQNRNNSSIHGSPGPAR 104
+ H I E K A P R Q Q S+ G G +R
Sbjct: 155 RYHQIGSGKCEIKVAEPKEIYRQQQQQQKGGRSAAAGERGGSR 197
Score = 121 (47.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S I+ + K+F+ GL+ ++ D FG + D ++ D T R RGFGF+
Sbjct: 4 SKINANKNQQDDGKMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVL 58
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLG 196
+ +VDKVL H+L+ +++ KRA K L P + +G
Sbjct: 59 FKEAASVDKVLELKEHKLDSMLIDPKRA--KALKEPPKKVFVG 99
Score = 37 (18.1 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 258 NLSPSHGGGANLSPNLSYG 276
N + ++GG N S SYG
Sbjct: 221 NYNSAYGGDQNYSDYGSYG 239
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 87/278 (31%), Positives = 130/278 (46%)
Query: 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64
L KLFIGG+S++T +D LR++F+ +G + D R+RGFGF+ ++ + V
Sbjct: 1 LRKLFIGGLSFETTDDSLREHFEKWGT------LTDCGNKRSRGFGFLTYSCVEEVDAAV 54
Query: 65 MQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESDF 122
+ H R V K+AV R+D S+ PG KK++VGG+ E +
Sbjct: 55 CARPHKAAVRVV-GKRAVSRED---------SV--KPGAHLMVKKLYVGGIKEDTEEYNL 102
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF ++G I + VM + + RGF F+T+D + VDK+L K H +NG EV + +
Sbjct: 103 RGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQK-HHAINGNNCEVGKVL 161
Query: 183 PKEL-SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSG 241
KE+ S G R + G + R +F G GG G G YG G +G
Sbjct: 162 SKEMQSAGSQRGRGGASGNFMGRGGNF--GGRNFGGRGGYGGGGGGSRGSYGG-NGGDNG 218
Query: 242 FTTIGPGYGMGLNFEPNLSPSHGGGANL-SPNLSYGRG 278
F YG + +GGG + YG G
Sbjct: 219 FGGDAGSYGSRPGYSSRRG--YGGGPGYGNQGGGYGGG 254
>UNIPROTKB|L7N0C2 [details] [associations]
symbol:L7N0C2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03014397
Ensembl:ENSCAFT00000016130 Uniprot:L7N0C2
Length = 278
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 77/228 (33%), Positives = 116/228 (50%)
Query: 68 HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKKYF 126
H +DGR VE K+AV R+D PG T KKIFVGG+ E + YF
Sbjct: 41 HKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHHLRDYF 89
Query: 127 DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK-E 185
+Q+G I + +M + + RGF F+T+D ++VDK++++ +H +NG EV++A+ K E
Sbjct: 90 EQYGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 149
Query: 186 LSPGPS--RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPVTIGRS 240
++ S R + G+ N+G R F + + + N S GG+G R G YG G +
Sbjct: 150 MASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYN 209
Query: 241 GFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
GF G +G G ++ G N S N +G N FGG S+
Sbjct: 210 GFGNDGSNFGGGGSYN-----DFGNYNNQSSNFGPMKGGN--FGGRSS 250
Score = 178 (67.7 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GGI DT E LRDYF+ +G++ IM R +G+ RGF F+ F D +++V+Q
Sbjct: 70 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDKIVIQ 129
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGS 99
K H ++G E +KA+ + + + + GS
Sbjct: 130 KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 163
Score = 51 (23.0 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G + +G + S+F G SYN G Y + +GP+ G G + GP G G F
Sbjct: 207 GYNGFG-NDGSNFGGG--GSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 260
Query: 256 -EPNLSPSHGG 265
+P +GG
Sbjct: 261 AKPRNQGGYGG 271
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 80/259 (30%), Positives = 130/259 (50%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S+ T E+ LR +F+ + ++ V+M+D T R+RG GF + V E
Sbjct: 17 QLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYT--TVEE-- 72
Query: 64 VMQKHMIDGRTVEAKKAVPRD-DQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
+D A A P D + +R +S PG T KIF+ G+ E
Sbjct: 73 ------MDA----AMNARPHKVDGRVVSREDSQ---RPGAHLTVKIFISGIKEDTEEHHL 119
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF+Q+ I + +M D +++ R F F+T+D ++VDK+ ++ +H +NG EV++A+
Sbjct: 120 RDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQKYHTVNGHNCEVRKAL 179
Query: 183 PK-ELSPGPS--RNQLGTHNY--GLSRVSSFLNGYTQSYNP----SSVGGYGLRIDGRYG 233
K E++ S R + G+ NY G R SF G ++ + G Y + +
Sbjct: 180 SKQEMASASSSQRGESGSGNYNNGGDR-GSFGGGSGSNFGDGGSYNDFGNYNNQ-SSNFR 237
Query: 234 PVTIGRSGFTTIGPGYGMG 252
P+ G + GP YG G
Sbjct: 238 PMKGANFGGRSSGP-YGGG 255
Score = 151 (58.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ TE + +F+Q+ + VVM D NT+R RG GF TY + E +D
Sbjct: 15 PEQLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMD 74
Query: 162 KVLLKTFHELNGKMV 176
+ H+++G++V
Sbjct: 75 AAMNARPHKVDGRVV 89
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 186 (70.5 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 35/84 (41%), Positives = 56/84 (66%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E GK+F+G +SW + L++YF FGEV++ I D TGR+RGFGF++ D A E++
Sbjct: 70 EEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKI 129
Query: 64 VMQK-HMIDGRTVEAKKA-VPRDD 85
+ QK H ++G ++ +KA V ++D
Sbjct: 130 LDQKEHRLNGDVIDPEKAKVMKND 153
Score = 156 (60.0 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 89 QNR-NNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPR 147
QNR I S K+FVG L+ + + D K YF +FG + D + D NT R R
Sbjct: 54 QNRIEGEQIKVSKNVEEEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSR 113
Query: 148 GFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
GFGF+ +V+K+L + H LNG +++ ++A
Sbjct: 114 GFGFVLIKDAASVEKILDQKEHRLNGDVIDPEKA 147
Score = 143 (55.4 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 36/81 (44%), Positives = 49/81 (60%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVL 164
KKIFVG L TE + + F +FG I + + D + + RGF FIT+ + EE V KVL
Sbjct: 156 KKIFVG-LNPEATEKN--RDFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVL 212
Query: 165 LKTFHELNGKMVEVKRAVPKE 185
K FH ++G+ E+K A PKE
Sbjct: 213 EKKFHTISGRKCEIKVAQPKE 233
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 77/227 (33%), Positives = 116/227 (51%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E EL KLFIGG+S++T +D LR++F+ +G + D R+RGFGF+ ++ +
Sbjct: 28 EKELRKLFIGGLSFETTDDSLREHFEKWGT------LTDCGNKRSRGFGFLTYSCVEEVD 81
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTE 119
V + H R V K+AV R+D S+ PG KK++VGG+ E
Sbjct: 82 AAVCARPHKAAVRVV-GKRAVSRED---------SV--KPGAHLMVKKLYVGGIKEDTEE 129
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
+ + YF ++G I + VM + + RGF F+T+D + VDK+L K H +NG EV
Sbjct: 130 YNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQK-HHAINGNNCEVG 188
Query: 180 RAVPKEL-SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
+ + KE+ S G R + G + R +F G N GGYG
Sbjct: 189 KVLSKEMQSAGSQRGRGGASGNFMGRGGNF-GGR----NFGGRGGYG 230
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 83/274 (30%), Positives = 129/274 (47%)
Query: 29 FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVPRDDQN 87
+G + + V+M+D T +RGF F+ +A + + ++ H +D R VE KKAV R+D
Sbjct: 3 WGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDSQ 62
Query: 88 IQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRP 146
PG T KKIFVGG+ + + YF+ +G I + +M D +
Sbjct: 63 -----------RPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNK 111
Query: 147 RGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLG---THNYGLS 203
R F F+T+D+ ++VDK++++ +H +NG EV++A+ K+ S +Q G + N+G
Sbjct: 112 RSFAFVTFDAHDSVDKIVIQKYHTVNGHNCEVRKALLKQEMASASSSQRGQSCSGNFGGG 171
Query: 204 RVSSF-------LNGYTQSYNPSSVGGYGLRIDGRY---GPVTIGRS-GFTTIGPGYG-M 251
F G + S G G DG Y GP G S G+ + G GYG
Sbjct: 172 CGGGFGGNENFGCGGNLSGQSGSGDGCNGFGNDGGYRGGGPGYSGGSRGYGSGGQGYGNQ 231
Query: 252 GLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGG 285
G + S S+ N YG +FGG
Sbjct: 232 GSGYGG--SGSYDSYNNGGGGGGYGGASGSNFGG 263
Score = 162 (62.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GGI DT + LRDYF+ +G++ IM DR +G R F F+ F +++V+Q
Sbjct: 72 KIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAHDSVDKIVIQ 131
Query: 67 K-HMIDGRTVEAKKAVPRDD 85
K H ++G E +KA+ + +
Sbjct: 132 KYHTVNGHNCEVRKALLKQE 151
Score = 127 (49.8 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 128 QFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELS 187
++G++TD VVM D NT+ RGF F+TY + E VD + H+++ ++VE+K+AV +E S
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDS 61
Query: 188 PGP 190
P
Sbjct: 62 QRP 64
Score = 58 (25.5 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 25/97 (25%), Positives = 38/97 (39%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNP-SSVGGY---GLRIDGRYGPVTIGRSGFTTIGPGYGM 251
G N+G S +G N + GGY G G G G+ G GYG
Sbjct: 178 GNENFGCGGNLSGQSGSGDGCNGFGNDGGYRGGGPGYSGGSRGYGSGGQGYGNQGSGYGG 237
Query: 252 GLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
+++ + GGG + ++G G + + GN N
Sbjct: 238 SGSYDSYNNGGGGGGYGGASGSNFGGGRSYNNFGNYN 274
Score = 57 (25.1 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G YG + S+F G +SYN + G Y + +G + G G + G G G F
Sbjct: 249 GGGGYGGASGSNFGGG--RSYN--NFGNYNNQ-SSNFGAMKGGNFGGRSSGSYGGGGQYF 303
Query: 256 EPNLSPSHGGGANLSPNLSYGRG 278
+ G ++ S + SYG G
Sbjct: 304 AKPQNQGGYGSSSSSSSSSYGSG 326
Score = 42 (19.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 266 GANLSPNLSYGRGLNPSFGGNSN 288
G + S N +G G FGGN N
Sbjct: 161 GQSCSGN--FGGGCGGGFGGNEN 181
Score = 38 (18.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
G S N G +N S + G + S GG G
Sbjct: 264 GRSYNNFGNYNNQSSNFGAMKGGNFGGRSSGSYGGGG 300
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 76/256 (29%), Positives = 127/256 (49%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T++D LR++F+ + + V+M D T R+R FGF+ ++ +
Sbjct: 11 QLSKLFIGGLSFETSDDSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYSCVKEVDAA 69
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPAR-TKKIFVGGLASTVTESD 121
+ + H +DG VE K+ R+D S+ P KKIF+GG+ E +
Sbjct: 70 MCARPHKVDGCVVEPKRPF-RED---------SV--KPVVCLLAKKIFIGGIKEDTEEHN 117
Query: 122 FKKYFDQFGIITDVVVMY-DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+ YF+++G I + +M D + RGF F+T+D VDK++++ H +N +VK+
Sbjct: 118 LRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVVQKCHTINRHNCDVKK 177
Query: 181 AVPKELSPG--PSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIG 238
A K+ P R + G + + R +F +G + + GG G G G G
Sbjct: 178 APSKQEMPSVRSQRCRGGRSSNFMGRGGNFGHGRRNFGHGGNFGGRGGGSGGSRGSYGGG 237
Query: 239 RSGFTTIGPGYGMGLN 254
+ G G G N
Sbjct: 238 DGRYNGFG-GDGCNYN 252
Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/84 (34%), Positives = 50/84 (59%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H + K+F+GGL+ ++ +++F+Q+ ++T VVM D T+R R FGF+TY
Sbjct: 4 HNPKEQEQLSKLFIGGLSFETSDDSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYSC 62
Query: 157 EEAVDKVLLKTFHELNGKMVEVKR 180
+ VD + H+++G +VE KR
Sbjct: 63 VKEVDAAMCARPHKVDGCVVEPKR 86
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 56/140 (40%), Positives = 88/140 (62%)
Query: 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
+++ KIFVGG+ E++ ++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 88 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 147
Query: 163 VLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVG 222
+ FH++ GK VEVKRA P++ S + Q G +G V + NG+ P+
Sbjct: 148 AVNMHFHDIMGKKVEVKRAEPRD-SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQ 206
Query: 223 GYGLRIDGRYGPV--TIGRS 240
GYG + G + P IG+S
Sbjct: 207 GYGPQ--GMWVPAGQAIGKS 224
Score = 216 (81.1 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 51/137 (37%), Positives = 75/137 (54%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSP---GPARTKKIF--VGGLASTV 117
+ + H +DGR + PR D + N+ + G P G ++ F G + V
Sbjct: 68 LASRPHTLDGRNQKG----PRSDNSKSNK--IFVGGIPHNCGETELREYFKKFGVVTEVV 121
Query: 118 TESDFKKYFDQ-FGIIT 133
D +K + FG IT
Sbjct: 122 MIYDAEKQRPRGFGFIT 138
Score = 176 (67.0 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 38/82 (46%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP-AVAERVVM 65
K+F+GGI + E LR+YF+ FG V E V++ D R RGFGFI F D +V + V M
Sbjct: 92 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 151
Query: 66 QKHMIDGRTVEAKKAVPRDDQN 87
H I G+ VE K+A PRD ++
Sbjct: 152 HFHDIMGKKVEVKRAEPRDSKS 173
Score = 145 (56.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 167 TFHELNGK 174
H L+G+
Sbjct: 71 RPHTLDGR 78
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 267 (99.0 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 59/180 (32%), Positives = 103/180 (57%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S DT +++L +YF +G V++A++++D T +RGFGF+ FA AE
Sbjct: 68 QLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESA 127
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESD- 121
+ + H + G+TV++K+A+PR+ + P P K+ + G+ + V D
Sbjct: 128 MNDRPHKLGGKTVDSKRAIPREQMSSMIPP-PFFETDPAPGC--KLLLNGITNGVHSVDS 184
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF--HELNGKMVEVK 179
+ YF+ FG + V ++ +PRG GF+ Y+ +E+ D+ L H +N + +EV+
Sbjct: 185 LRVYFETFGTLDQVEIL-----GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEVR 239
Score = 187 (70.9 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 36/89 (40%), Positives = 56/89 (62%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H SP P + +K+F+GGL+ T+ YF Q+G + D +V+ D NT+ RGFGF+T+ S
Sbjct: 63 HDSP-P-QLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFAS 120
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
+ + + H+L GK V+ KRA+P+E
Sbjct: 121 IFSAESAMNDRPHKLGGKTVDSKRAIPRE 149
>UNIPROTKB|F1SA31 [details] [associations]
symbol:F1SA31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:CU856608
Ensembl:ENSSSCT00000014866 Uniprot:F1SA31
Length = 332
Score = 244 (91.0 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 64/180 (35%), Positives = 102/180 (56%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAV---AERV 63
KLFIGG+S T L +Y++ +G+ L+ V+++D + ++R F + F P + A R
Sbjct: 17 KLFIGGLSSQTTGKGL-NYYKQWGK-LDCVVIRDPTSQKSR-FILLHF-HPWLRVDAARA 72
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESDF 122
+ IDG+ V K AVPR+D +G PGP T KK+F+GGL E
Sbjct: 73 ATPRS-IDGKMVAPKHAVPRED-----------YGKPGPLVTVKKLFIGGLTEDTEEHHL 120
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ YF+++ I + ++ D + + RGFGF+T+D + VDK+L K H +NG EV++A+
Sbjct: 121 RDYFEKYEKIDAIEIITDRQSSKIRGFGFVTFDDHDHVDKLLQKN-HTVNGHHAEVRKAL 179
Score = 170 (64.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAV-IMKDRATGRARGFGFIVFADPAVAERVVM 65
KLFIGG++ DT E LRDYF+ + E ++A+ I+ DR + + RGFGF+ F D ++++
Sbjct: 105 KLFIGGLTEDTEEHHLRDYFEKY-EKIDAIEIITDRQSSKIRGFGFVTFDDHDHVDKLLQ 163
Query: 66 QKHMIDGRTVEAKKAVPRDD-QNIQN-RNNSSIHGSPG 101
+ H ++G E +KA+ + Q +Q+ R+ H G
Sbjct: 164 KNHTVNGHHAEVRKALSQSKIQEVQHFRSGKGGHTGLG 201
Score = 115 (45.5 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ +K+F+GGL+S T Y+ Q+G + D VV+ D +Q+ R F + + VD
Sbjct: 14 KKEKLFIGGLSSQTTGKGLN-YYKQWGKL-DCVVIRDPTSQKSR-FILLHFHPWLRVDAA 70
Query: 164 LLKTFHELNGKMVEVKRAVPKEL--SPGP 190
T ++GKMV K AVP+E PGP
Sbjct: 71 RAATPRSIDGKMVAPKHAVPREDYGKPGP 99
Score = 41 (19.5 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 238 GRSGFTTIGPGYGMGLNFEPNLSPSHGGGAN--LS-PNLSYG 276
G+ G T +G G G NF GG++ LS P L G
Sbjct: 193 GKGGHTGLGDSPGGGGNFGAGPGRDFRGGSDRYLSGPGLRDG 234
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 265 (98.3 bits), Expect = 6.8e-23, P = 6.8e-23
Identities = 58/159 (36%), Positives = 93/159 (58%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T +D LR++F+ + + + V+M+D T R+RGFGF+ V + +
Sbjct: 14 KLFIGGLSFETTDDSLREHFK-WDTLTDCVVMRDPQTERSRGFGFVYSCVEEVDAAMCAR 72
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESDFKKY 125
H +DG VE K+A+ R+D S+ PG KKIFVGG+ E + + Y
Sbjct: 73 PHKVDGHVVEPKRAISRED---------SV--KPGAHLMVKKIFVGGIKEDTEEYNLRDY 121
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
F+ +G I + V+ D + + RGF F+T+D + VDK++
Sbjct: 122 FE-YGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDKIV 159
Score = 175 (66.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 46/132 (34%), Positives = 69/132 (52%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F ++ +TD VVM D T+R RGFGF+ Y
Sbjct: 4 HDPKEPEQRRKLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFV-YSC 61
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGY---T 213
E VD + H+++G +VE KRA+ +E S P G H L F+ G T
Sbjct: 62 VEEVDAAMCARPHKVDGHVVEPKRAISREDSVKP-----GAH---LMVKKIFVGGIKEDT 113
Query: 214 QSYNPSSVGGYG 225
+ YN YG
Sbjct: 114 EEYNLRDYFEYG 125
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 262 (97.3 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 64/147 (43%), Positives = 85/147 (57%)
Query: 104 RTKKIFVGGL-ASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
RTKKIFVGGL A+TV E D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+K
Sbjct: 47 RTKKIFVGGLSANTVVE-DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 105
Query: 163 VLLKTFHELNGKMVEVKRAVPKELS--PGPSRNQLGTH--------NYGLSRVSSFLNGY 212
V FHE+N KMVE K+A PKE+ PG G G+ +F+ Y
Sbjct: 106 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY 165
Query: 213 TQSYNPSSVGGYGLRIDG----RYGPV 235
+ Y P YG + G YGPV
Sbjct: 166 GRGY-PGFAPSYGYQFPGFPAAAYGPV 191
Score = 172 (65.6 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 33/79 (41%), Positives = 54/79 (68%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-M 65
K+F+GG+S +T + ++ YF+ FG+V +A++M D+ T R RGFGF+ F + V E+V +
Sbjct: 50 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 109
Query: 66 QKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 110 HFHEINNKMVECKKAQPKE 128
Score = 41 (19.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 183 PKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
P SPGP + YG + S + Y + +P G+G I G
Sbjct: 213 PGANSPGPVADL-----YGPASQDSGVGNYISAASPQPGSGFGHGIAG 255
Score = 40 (19.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 232 YGPVTIGRS-G--FTTIGPGYGMGLNFEPNLSPSHGGG-ANLSPNLSY 275
+ P T GR+ G +T GMG+ PN ++G G +P+ Y
Sbjct: 131 FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGY 178
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 260 (96.6 bits), Expect = 2.7e-22, P = 2.7e-22
Identities = 81/256 (31%), Positives = 120/256 (46%)
Query: 38 MKDRATGRARGFGFIVFADPAVAERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSI 96
M+D T R+RGFGF+ ++ + + + H R VE K+AV R+D S+
Sbjct: 1 MRDPKTKRSRGFGFVTYSCVEEVDAAMYARPHK---RVVEPKRAVSRED---------SV 48
Query: 97 HGSPGPART-KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYD 155
PG T KKIFVGG+ E + + F+ +G I + VM D + + RG F+T+D
Sbjct: 49 --KPGAHLTVKKIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFD 106
Query: 156 SEEAVDKVLLKTFHELNGKMVEVKRAVPKE--LSPGPSRNQLGTHNYGLSRVSSFLNG-- 211
+ VDK++++ +H +NG EVK+A+ K+ S G R + G + R +F G
Sbjct: 107 DHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGG 166
Query: 212 -YTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLS 270
+ + N GGYG G G G G+ G G G ++GGG S
Sbjct: 167 NFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGGGG-----------NYGGGPGYS 215
Query: 271 PNLSYGRGLNPSFGGN 286
YG G P GN
Sbjct: 216 SRGGYGGG-GPGGYGN 230
Score = 171 (65.3 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GGI DT E LRD F+ +G++ +M+DR +G+ RG F+ F D +++V+Q
Sbjct: 58 KIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQ 117
Query: 67 K-HMIDGRTVEAKKAVPRDD 85
K H I+G E KKA+ + +
Sbjct: 118 KYHTINGHNCEVKKALSKQE 137
Score = 76 (31.8 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 36/108 (33%), Positives = 42/108 (38%)
Query: 189 GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPG 248
G SR G + G + Y SS GGYG G YG G G G G
Sbjct: 185 GGSRGSYGGGDGGYNGFGGGGGNYGGGPGYSSRGGYGGGGPGGYGNQGGGYGGG---GGG 241
Query: 249 YGMGLNFEPNLSPSHGGGANLSP--NLS------YGRGLNPSFGGNSN 288
Y G N N ++GGG N + N S YG SFGG S+
Sbjct: 242 YD-GYNEGGNFGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSS 288
Score = 57 (25.1 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 23/75 (30%), Positives = 30/75 (40%)
Query: 188 PGPSRNQLGTHN-----Y-GLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIG--- 238
PG NQ G + Y G + +F Y N + G Y + YGP+ G
Sbjct: 225 PGGYGNQGGGYGGGGGGYDGYNEGGNFGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFG 284
Query: 239 -RSGFTTIGPGYGMG 252
RS + G GYG G
Sbjct: 285 GRSSGSPYGGGYGSG 299
Score = 49 (22.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 21/56 (37%), Positives = 24/56 (42%)
Query: 237 IGRSG-FTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRG---LNPSFGGNSN 288
+GR G F G +G G NF +GGG S SYG G N GG N
Sbjct: 155 MGRGGNFGGGGGNFGRGGNFGGR--GGYGGGGGGSRG-SYGGGDGGYNGFGGGGGN 207
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 256 (95.2 bits), Expect = 8.1e-22, P = 8.1e-22
Identities = 77/251 (30%), Positives = 120/251 (47%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR + + +M D T +RGF F+ +A +
Sbjct: 11 QLRKLFIGGLSFETTDESLRSHCSHS----PSCVMTDPNTKCSRGFRFVTYATVEEVDAA 66
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +D R VE K+ V R+ PG T KKIF GG+ E
Sbjct: 67 MNARPHKVDRRVVEPKRGVSREGSQ-----------RPGAHLTVKKIFAGGIKEDTEERH 115
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF++ G I + +M D ++ + RGF F+T+D ++VDK +++ +H +NG E R+
Sbjct: 116 LRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNRERGRS 175
Query: 182 VPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSG 241
G G + +G + S+F G SY S G Y R +GPV G
Sbjct: 176 GSGNFGGGRGGGD-GYNGFG-NDGSNFGGG--GSY--SDFGNYNNR-SSNFGPVKGENFG 228
Query: 242 FTTIGPGYGMG 252
+ GP G G
Sbjct: 229 GRSSGPDGGGG 239
Score = 131 (51.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + + + VM D NT+ RGF F+TY + E VD
Sbjct: 9 PGQLRKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVD 64
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++ ++VE KR V +E S P
Sbjct: 65 AAMNARPHKVDRRVVEPKRGVSREGSQRP 93
Score = 48 (22.0 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 238 GRSGFTTIGPGYGMGLNFEP--NLSPSHGGGANLSPNLSYG-RGLN--P----SFGGNSN 288
GRSG G G G G + N + GGG + S +Y R N P +FGG S+
Sbjct: 173 GRSGSGNFGGGRGGGDGYNGFGNDGSNFGGGGSYSDFGNYNNRSSNFGPVKGENFGGRSS 232
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 232 (86.7 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 53/176 (30%), Positives = 94/176 (53%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KL IGG+ + T + LR++F+ +G + V+M+D T R+R GF+ + +
Sbjct: 21 QLHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAA 80
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + +DGR V+ K+AV R+D PG T KKIF GG+ E +
Sbjct: 81 MNARPQKMDGRLVKPKRAVSREDSQ-----------RPGTQLTVKKIFEGGIKEDTEEHN 129
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVE 177
+ YF+ +G I + +M D ++ + + F + D ++VDK+ ++ +H +NG V+
Sbjct: 130 VRDYFEHYGKIDMIEIMTDRSSGK-KEFALVPLDDHDSVDKIAIQKYHTVNGTTVK 184
Score = 171 (65.3 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 34/89 (38%), Positives = 54/89 (60%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + K+ +GGL T + +F+++G TD VVM D NT+R R GF+TY++ E VD
Sbjct: 19 PEQLHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVD 78
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ +++G++V+ KRAV +E S P
Sbjct: 79 AAMNARPQKMDGRLVKPKRAVSREDSQRP 107
Score = 129 (50.5 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
++ + K+F GGI DT E +RDYF+ +G++ IM DR++G+ + F + D +
Sbjct: 110 QLTVKKIFEGGIKEDTEEHNVRDYFEHYGKIDMIEIMTDRSSGK-KEFALVPLDDHDSVD 168
Query: 62 RVVMQK-HMIDGRTVE 76
++ +QK H ++G TV+
Sbjct: 169 KIAIQKYHTVNGTTVK 184
Score = 44 (20.5 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 274 SYGRGLNPSFGGNSN 288
++G G SFGGN N
Sbjct: 185 NFGGGCGCSFGGNDN 199
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 192 (72.6 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 36/96 (37%), Positives = 59/96 (61%)
Query: 100 PGPART-KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
PG T KKIFVGG+ E + YF+Q+G I + +M D + + RGF F+T+D +
Sbjct: 49 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 108
Query: 159 AVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQ 194
+VDK++++ +H +NG EV++A+ K+ S +Q
Sbjct: 109 SVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 144
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+GGI DT E LRDYF+ +G++ IM DR +G+ RGF F+ F D +++V+Q
Sbjct: 57 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 116
Query: 67 K-HMIDGRTVEAKKAVPRDD 85
K H ++G E +KA+ + +
Sbjct: 117 KYHTVNGHNCEVRKALSKQE 136
Score = 82 (33.9 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAV 36
+L KLFIGG+S++T ++ LR +F+ +G + + V
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCV 44
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 249 (92.7 bits), Expect = 5.4e-21, P = 5.4e-21
Identities = 74/248 (29%), Positives = 117/248 (47%)
Query: 43 TGRARGFGFIVFADPAVAERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
T R+RGFGF+ + + + H +DGR VE K+A+ R+D R ++ +
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQ---RPDAHL----- 52
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
KKIFVG + E + YF+Q+G I + +M D +++ RGF F+T+D ++VD
Sbjct: 53 --TVKKIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVD 110
Query: 162 KVLLKTFHELNGK-MVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSS 220
K++ + +H +NG EV++ + K+ S +Q G + SR GY P
Sbjct: 111 KIVTQKYHTVNGHHKCEVRKPLSKQEMASASFSQRGRNG---SRT-----GY-----PGG 157
Query: 221 VGGYGL--RIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRG 278
GYG + G G G + + G G G +F + GGG + S +Y
Sbjct: 158 SRGYGSGGQDCGNQGSGYGGSGSYDSYNNGGG-GSSFGSGSRRNFGGGGSYSDFGNYNN- 215
Query: 279 LNPSFGGN 286
P GGN
Sbjct: 216 FGPMKGGN 223
Score = 162 (62.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 37/104 (35%), Positives = 56/104 (53%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+G I DT E LRDYF+ +G++ IM DR + + RGF F+ F D +++V Q
Sbjct: 56 KIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQ 115
Query: 67 K-HMIDGR-TVEAKKAVPRDDQNI----QNRNNSSIHGSPGPAR 104
K H ++G E +K + + + Q N S G PG +R
Sbjct: 116 KYHTVNGHHKCEVRKPLSKQEMASASFSQRGRNGSRTGYPGGSR 159
Score = 50 (22.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 206 SSFLNGYTQSYNPSSVGGYGLRID-GRY---GPVTIGRSGFTTIGPGYGMGLNFEPNLSP 261
SSF +G +++ GG G D G Y GP+ G G + GP G G + S
Sbjct: 191 SSFGSGSRRNF-----GGGGSYSDFGNYNNFGPMKGGNFGARSSGPNDGGGGYGGSSSSS 245
Query: 262 SHGGG 266
S+G G
Sbjct: 246 SYGSG 250
Score = 49 (22.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 246 GPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSN 288
G GYG +++ S ++GGG + S+G G +FGG +
Sbjct: 172 GSGYGGSGSYD---SYNNGGGGS-----SFGSGSRRNFGGGGS 206
Score = 49 (22.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNSNR 289
R+G+ GYG G N +GG + + G G SFG S R
Sbjct: 151 RTGYPGGSRGYGSGGQDCGNQGSGYGGSGSYDSYNNGGGG--SSFGSGSRR 199
>ZFIN|ZDB-GENE-031030-1 [details] [associations]
symbol:tardbpl "TAR DNA binding protein, like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
Length = 303
Score = 248 (92.4 bits), Expect = 7.0e-21, P = 7.0e-21
Identities = 57/178 (32%), Positives = 94/178 (52%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
L + G+ W T E L+DYF FGEV+ + +D +G ++GFGF+ F D +V+ Q+
Sbjct: 107 LIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQR 166
Query: 68 HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFD 127
HMIDGR + K +P ++ G P R++K+FVG +T + +++F
Sbjct: 167 HMIDGRWCDCK--LPNSKYFLEQA------GPDEPMRSRKVFVGRCTEDMTADELRQFFM 218
Query: 128 QFGIITDVVVMYDHNTQRP-RGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
Q+G +TDV + +P R F F+T+ +++ V + L + G V + A PK
Sbjct: 219 QYGEVTDVFI------PKPFRAFAFVTF-ADDQVAQSLCGEDLIIKGTSVHISNAEPK 269
Score = 113 (44.8 bits), Expect = 0.00085, P = 0.00085
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAER 62
M K+F+G + D D LR +F +GEV + I K R F F+ FAD VA+
Sbjct: 194 MRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKP-----FRAFAFVTFADDQVAQS 248
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQN 90
+ + +I G +V A P+ + NI +
Sbjct: 249 LCGEDLIIKGTSVHISNAEPKHN-NIHH 275
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 246 (91.7 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 71/253 (28%), Positives = 120/253 (47%)
Query: 10 IGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK-H 68
I G+S++T ++ L+ ++M+D T R+RGFGF+ + + + + H
Sbjct: 18 IRGLSFETTDESLK----TMENTSNFLVMRDPNTKRSRGFGFVPYTTVEEVDATMNARPH 73
Query: 69 MIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG-PARTKKIFVGGLASTVTESDFKKYFD 127
+ GR V K+ V + Q PG P KK+ VGG+ E + YF+
Sbjct: 74 KVGGRVVGPKR-VSCGMEKSQR---------PGAPLTMKKVLVGGINEDTEEHHLRDYFE 123
Query: 128 QFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELS 187
+G + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A+ K+
Sbjct: 124 WYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQER 183
Query: 188 PGPS---RNQLGTHNYGLSRVSSF--LNGYTQSYNPSSVGGYG-LRIDGRYGPVTIGRSG 241
S R + G+ N+G R F + + N G +G G YG G +G
Sbjct: 184 ASASSSQRGRSGSGNFGGGRGGGFGSNDNFGSGGNFCGHGDFGGSHGGGGYGGGD-GYNG 242
Query: 242 FTTIGPGYGMGLN 254
F G +G G N
Sbjct: 243 FGNDGSNFGGGGN 255
Score = 195 (73.7 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 54/174 (31%), Positives = 87/174 (50%)
Query: 100 PG-PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
PG P KK+ VGG+ E + YF+ +G + +M D + + RGF F+T+D +
Sbjct: 95 PGAPLTMKKVLVGGINEDTEEHHLRDYFEWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHD 154
Query: 159 AVDKVLLKTFHELNGKMVEVKRAVPKELSPGPS---RNQLGTHNYGLSRVSSFLNGYTQS 215
+VDK++++ +H +NG EV++A+ K+ S R + G+ N+G R F G +
Sbjct: 155 SVDKIVIQKYHTVNGHNCEVRKALSKQERASASSSQRGRSGSGNFGGGRGGGF--GSNDN 212
Query: 216 YNPSSVGGY-GLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGAN 268
+ S G + G G +G + G G+ G G G N N + GGG N
Sbjct: 213 FG--SGGNFCG---HGDFGG-SHGGGGY-----GGGDGYNGFGNDGSNFGGGGN 255
Score = 168 (64.2 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 36/100 (36%), Positives = 60/100 (60%)
Query: 3 MELGKLFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVA 60
+ + K+ +GGI+ DT E LRDYF+ +G EV+E IM DR + + RGF F+ F D
Sbjct: 99 LTMKKVLVGGINEDTEEHHLRDYFEWYGKTEVIE--IMTDRGSVKKRGFAFVTFDDHDSV 156
Query: 61 ERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGS 99
+++V+QK H ++G E +KA+ + ++ + + GS
Sbjct: 157 DKIVIQKYHTVNGHNCEVRKALSKQERASASSSQRGRSGS 196
>UNIPROTKB|L7N066 [details] [associations]
symbol:L7N066 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03013421
Ensembl:ENSCAFT00000006911 Uniprot:L7N066
Length = 309
Score = 190 (71.9 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 60/197 (30%), Positives = 94/197 (47%)
Query: 99 SPGPARTK--KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
SPG +R IFVGG+ E + +Q+G + + + D RGF F+T+D
Sbjct: 86 SPGDSRRPGAHIFVGGIKGDPEEHHPRDCLEQYGNVEVMETVTDRGRGEERGFAFVTFDD 145
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPK-ELSPGPSRNQ-LGTHNYGLSRVSSF--LNGY 212
++VDK++++ H + G EV++A+ K E++ PS + G+ N G R + + +
Sbjct: 146 HDSVDKIVIQKCHPVKGHSCEVRKALWKQEMARAPSSQRGEGSGNLGGGRGAGVGGNDSF 205
Query: 213 TQSYNPSSVGGYG-LRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSP 271
+ N S GG+G R G YG G GF G +G G ++ G N S
Sbjct: 206 GRGGNLSGRGGFGGSRGGGGYGGSGDGPHGFGNDGSHFGGGRSYN-----DFGNYNNQSS 260
Query: 272 NLSYGRGLNPSFGGNSN 288
N +G N FGG S+
Sbjct: 261 NFGPMKGGN--FGGRSS 275
Score = 136 (52.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
+F+GGI D E RD + +G EV+E V DR G RGF F+ F D +++V+
Sbjct: 97 IFVGGIKGDPEEHHPRDCLEQYGNVEVMETVT--DRGRGEERGFAFVTFDDHDSVDKIVI 154
Query: 66 QK-HMIDGRTVEAKKAV 81
QK H + G + E +KA+
Sbjct: 155 QKCHPVKGHSCEVRKAL 171
Score = 111 (44.1 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFG 50
E +L KLFIGG+S +T ++ LR + + +G + + V M+D R+RGFG
Sbjct: 9 EPQLRKLFIGGLSLETTDESLRSHSEQWGRLADCVAMRDPKAKRSRGFG 57
Score = 110 (43.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 34/101 (33%), Positives = 49/101 (48%)
Query: 99 SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
SP + +K+F+GGL+ T+ + + +Q+G + D V M D +R RGFG EE
Sbjct: 6 SPKEPQLRKLFIGGLSLETTDESLRSHSEQWGRLADCVAMRDPKAKRSRGFGVGPGPLEE 65
Query: 159 AVDKVLLKTFHELNGKMVEVKRA-VPKELSPGPSRNQLGTH 198
A + G EV RA + +SPG SR G H
Sbjct: 66 AAAQE--------PGPP-EVGRAWTQRAVSPGDSRRP-GAH 96
Score = 69 (29.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 28/84 (33%), Positives = 38/84 (45%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G H +G + S F G +SYN G Y + +GP+ G G + GP G G F
Sbjct: 232 GPHGFG-NDGSHFGGG--RSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 285
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P + GG S + SYG G
Sbjct: 286 AKPR---NQGGCGGSSSSSSYGGG 306
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 215 (80.7 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 47/131 (35%), Positives = 72/131 (54%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
L + G+ W T E L++YF FGEVL + KD TG ++GFGF+ F + +V+ Q+
Sbjct: 39 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQR 98
Query: 68 HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG-PARTKKIFVGGLASTVTESDFKKYF 126
HMIDGR + K +P Q SP P R++K+FVG +T + +++F
Sbjct: 99 HMIDGRWCDCK--LPNSKQ------------SPDEPLRSRKVFVGRCTEDMTADELQQFF 144
Query: 127 DQFGIITDVVV 137
Q+G + DV +
Sbjct: 145 CQYGEVVDVFI 155
Score = 126 (49.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 30/95 (31%), Positives = 48/95 (50%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+G + D D L+ +F +GEV++ I K R F F+ FAD VA+ + +
Sbjct: 125 KVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCGE 179
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+I G +V A P+ + N Q + G+PG
Sbjct: 180 DLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPG 214
Score = 118 (46.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 29/91 (31%), Positives = 45/91 (49%)
Query: 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+T + V GL TE D K+YF FG + V V D T +GFGF+ + E KV
Sbjct: 35 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKV 94
Query: 164 LLKTFHELNGKMVEVKRAVPKELSPGPSRNQ 194
+ + H ++G+ + K K+ P R++
Sbjct: 95 MSQR-HMIDGRWCDCKLPNSKQSPDEPLRSR 124
Score = 49 (22.3 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 19/49 (38%), Positives = 21/49 (42%)
Query: 239 RSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFGGNS 287
RSG PG G G N + S GGGA L N G +FG S
Sbjct: 205 RSGRFGGNPG-GFG-N-QGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFS 250
Score = 46 (21.3 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 226 LRIDGRYG--PVTIG-RSGF-TTIGPGYGMGLNFEPNLSPSHGGGAN 268
L GR+G P G + GF + G G G+G N N+ GGG N
Sbjct: 203 LERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNM----GGGMN 245
Score = 44 (20.5 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 222 GGYGLRIDGRYGPVTIGRSGF-TTIGPGYGMGLNFEP-NLSPSHGGGANLSPNLSYG 276
GG+G + G +G G +G G G G+NF +++P+ A + S+G
Sbjct: 214 GGFGNQ--GGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWG 268
>UNIPROTKB|F1PD20 [details] [associations]
symbol:F1PD20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03013453
Ensembl:ENSCAFT00000007675 Uniprot:F1PD20
Length = 309
Score = 186 (70.5 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 60/197 (30%), Positives = 93/197 (47%)
Query: 99 SPGPARTK--KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
SPG +R IFVGG+ E + +Q+G + + + D RGF F+T+D
Sbjct: 86 SPGDSRRPGAHIFVGGIKGDPEEHHPRDCLEQYGNVEVMETVTDRGRGEERGFAFVTFDD 145
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPK-ELSPGPSRNQ-LGTHNYGLSRVSSF--LNGY 212
++VDK++++ H G EV++A+ K E++ PS + G+ N G R + + +
Sbjct: 146 HDSVDKIVIQKCHPGKGHSCEVRKALWKQEMARAPSSQRGSGSGNLGGGRGAGVGGNDSF 205
Query: 213 TQSYNPSSVGGYG-LRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSP 271
+ N S GG+G R G YG G GF G +G G ++ G N S
Sbjct: 206 GRGGNLSGRGGFGGSRGGGGYGGSGDGPHGFGNDGSHFGGGRSYN-----DFGNYNNQSS 260
Query: 272 NLSYGRGLNPSFGGNSN 288
N +G N FGG S+
Sbjct: 261 NFGPMKGGN--FGGRSS 275
Score = 130 (50.8 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 35/95 (36%), Positives = 50/95 (52%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
+F+GGI D E RD + +G EV+E V DR G RGF F+ F D +++V+
Sbjct: 97 IFVGGIKGDPEEHHPRDCLEQYGNVEVMETVT--DRGRGEERGFAFVTFDDHDSVDKIVI 154
Query: 66 QK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGS 99
QK H G + E +KA+ + + R SS GS
Sbjct: 155 QKCHPGKGHSCEVRKALWKQEMA---RAPSSQRGS 186
Score = 111 (44.1 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFG 50
E +L KLFIGG+S +T ++ LR + + +G + + V M+D R+RGFG
Sbjct: 9 EPQLRKLFIGGLSLETTDESLRSHSEQWGRLADCVAMRDPKAKRSRGFG 57
Score = 110 (43.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 34/101 (33%), Positives = 49/101 (48%)
Query: 99 SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
SP + +K+F+GGL+ T+ + + +Q+G + D V M D +R RGFG EE
Sbjct: 6 SPKEPQLRKLFIGGLSLETTDESLRSHSEQWGRLADCVAMRDPKAKRSRGFGVGPGPLEE 65
Query: 159 AVDKVLLKTFHELNGKMVEVKRA-VPKELSPGPSRNQLGTH 198
A + G EV RA + +SPG SR G H
Sbjct: 66 AAAQE--------PGPP-EVGRAWTQRAVSPGDSRRP-GAH 96
Score = 69 (29.3 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 28/84 (33%), Positives = 38/84 (45%)
Query: 196 GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF 255
G H +G + S F G +SYN G Y + +GP+ G G + GP G G F
Sbjct: 232 GPHGFG-NDGSHFGGG--RSYN--DFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGGGGQYF 285
Query: 256 -EPNLSPSHGGGANLSPNLSYGRG 278
+P + GG S + SYG G
Sbjct: 286 AKPR---NQGGCGGSSSSSSYGGG 306
>UNIPROTKB|F1NSZ7 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AADN02043198 EMBL:AADN02043199
EMBL:AADN02043200 EMBL:AADN02043201 IPI:IPI00576372
Ensembl:ENSGALT00000008924 ArrayExpress:F1NSZ7 Uniprot:F1NSZ7
Length = 262
Score = 239 (89.2 bits), Expect = 7.6e-20, P = 7.6e-20
Identities = 60/148 (40%), Positives = 84/148 (56%)
Query: 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
RTKKIFVGGL+ T D K+YF+QFG +T ++ +D + R FGF+T++SE+ V+KV
Sbjct: 18 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKV 77
Query: 164 LLKTFHELNGKMVEVKRAVPKE-LSP-GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSV 221
FHE+N KMVE K+A PKE +SP G +R + YG+ +F+ G +
Sbjct: 78 CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMD---AFMLG---------I 125
Query: 222 GGYGLRIDGRYGPVTIGRSGFTTIGPGY 249
G G G + T +T I PGY
Sbjct: 126 GMLGY--PG-FQAATYASRSYTGIAPGY 150
Score = 142 (55.0 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-M 65
K+F+GG+S +T + ++ YF+ FG+V ++ DR R FGF+ F + E+V +
Sbjct: 21 KIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKVCEI 80
Query: 66 QKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 81 HFHEINNKMVECKKAQPKE 99
Score = 45 (20.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP G N S VSS+++ + + PS+ G+G + G
Sbjct: 212 SPGPMAELYGAANQD-SGVSSYISAASPA--PST--GFGHSLGG 250
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 194 (73.4 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
Identities = 43/127 (33%), Positives = 72/127 (56%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++ ++ LR +F+ +G + +V+M+D T R+ GFGF+ +A + + +
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+ H +D R +E K+AV R+D R + + KKIFVG + E + Y
Sbjct: 61 RPHKVDERVLEPKRAVSREDSE---RTGTHL-------TVKKIFVGVVKEDTEEHHLRDY 110
Query: 126 FDQFGII 132
F+Q+G I
Sbjct: 111 FEQYGKI 117
Score = 178 (67.7 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 37/92 (40%), Positives = 60/92 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+F+GGL+ T+ + +F+Q+G +T+ VVM D NT+R GFGF+TY + E VD + +
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 167 TFHELNGKMVEVKRAVPKELSPGPSRNQLGTH 198
H+++ +++E KRAV +E S + GTH
Sbjct: 61 RPHKVDERVLEPKRAVSREDS-----ERTGTH 87
Score = 153 (58.9 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 43/155 (27%), Positives = 71/155 (45%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
KKIFVG + E + YF+Q+G I + GF F T+D ++VDK+++
Sbjct: 91 KKIFVGVVKEDTEEHHLRDYFEQYGKI--------QRQWKKEGFCFFTFDDHDSVDKIVI 142
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNP---SSVG 222
+ +H + G EV++ + K+ S +Q G + S+ N ++ + P + G
Sbjct: 143 QKYHTVGGHTCEVRKPLSKQEMASASSSQRGRSGSSYNGFGSY-NNHSSKFGPMKGGNFG 201
Query: 223 GYGLRIDGRYG-----PVTIGRSGFTTIGPGYGMG 252
G G DG G P + G G ++ YG G
Sbjct: 202 GGGSGPDGGRGQYFAKPRSQGGYGGSSSSSSYGSG 236
Score = 119 (46.9 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+G + DT E LRDYF+ +G++ + + GF F F D +++V+Q
Sbjct: 92 KIFVGVVKEDTEEHHLRDYFEQYGKI--------QRQWKKEGFCFFTFDDHDSVDKIVIQ 143
Query: 67 K-HMIDGRTVEAKKAVPRDDQ-----NIQNRNNSSIHG 98
K H + G T E +K + + + + + R+ SS +G
Sbjct: 144 KYHTVGGHTCEVRKPLSKQEMASASSSQRGRSGSSYNG 181
Score = 67 (28.6 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
Identities = 25/79 (31%), Positives = 35/79 (44%)
Query: 202 LSRVSSFLNGYT-QSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNF-EPNL 259
++ SS G + SYN G Y ++GP+ G G GP G G F +P
Sbjct: 164 MASASSSQRGRSGSSYN--GFGSYNNH-SSKFGPMKGGNFGGGGSGPDGGRGQYFAKPRS 220
Query: 260 SPSHGGGANLSPNLSYGRG 278
+GG ++ S SYG G
Sbjct: 221 QGGYGGSSSSS---SYGSG 236
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 178 (67.7 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+F+GGL+ T + + +F+Q G +TD VV D NT+R RGFGF+TY + E VD +
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 167 TFHELNGKMVEVKRAVPKELSPGP 190
H+++ ++VE RAV +E S P
Sbjct: 61 RPHKVDARVVEPNRAVSREDSQRP 84
Score = 153 (58.9 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLFIGG+S++T R +F+ G + + V+ +D T R+RGFGF+ +A + +
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 67 K-HMIDGRTVEAKKAVPRDD 85
+ H +D R VE +AV R+D
Sbjct: 61 RPHKVDARVVEPNRAVSRED 80
Score = 138 (53.6 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 40/139 (28%), Positives = 68/139 (48%)
Query: 109 FVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168
FV G+ E + ++Q+G I + +M D + R F F+T+ + +D+++L+ +
Sbjct: 86 FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHD-LDEIVLQKY 144
Query: 169 HELNGKMVEVKRAVPKELSP---GPSRNQ-LGTHNYGLSRVSSFLNGYTQSYNPS-SVGG 223
H ++G EV++A+ K+ SP G R G NYG +G +YN S GG
Sbjct: 145 HNVHGYNCEVRKALSKQ-SPDYSGGGRGYGSGGQNYGKQGSGYGGSGSYDTYNNGGSRGG 203
Query: 224 YGLRIDGRYGPVTIGRSGF 242
+G +G V +GF
Sbjct: 204 FGGGSRSNFGGVR-SYNGF 221
Score = 128 (50.1 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 9 FIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKH 68
F+ GI DT E L++ ++ +G++ IM DR G+ R F F+ F D + E V+ + H
Sbjct: 86 FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHDLDEIVLQKYH 145
Query: 69 MIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+ G E +KA+ + + +GS G
Sbjct: 146 NVHGYNCEVRKALSKQSPDYSGGGRG--YGSGG 176
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 235 (87.8 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 51/145 (35%), Positives = 84/145 (57%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ E K+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + +
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H ++G+ ++ K+A + ++ + P KKIFVGGL+ E
Sbjct: 153 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 196
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQR 145
++YF FG + + + D+ T +
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNK 221
Score = 196 (74.1 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 40/107 (37%), Positives = 65/107 (60%)
Query: 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTK--KIFVGGLASTVTESDFKKYFDQFGIITD 134
AK +++++ + N+S H A+ + K+F+GGL+ T+ D K YF +FG + D
Sbjct: 66 AKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ D T R RGFGF+ + E+VDKV+ + H+LNGK+++ KRA
Sbjct: 126 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>MGI|MGI:2387629 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0043922 "negative regulation by host of
viral transcription" evidence=ISO] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2387629 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003730 GO:GO:0003690 GO:GO:0043922 GO:GO:0070935
UniGene:Mm.378962 CTD:23435 eggNOG:NOG145464 HOGENOM:HOG000254792
HOVERGEN:HBG058671 OrthoDB:EOG447FTT OMA:QFFSQYG EMBL:AK133207
EMBL:AK153803 EMBL:BC012873 EMBL:BC025544 EMBL:BC027772
EMBL:BC031126 EMBL:BC033475 IPI:IPI00121758 RefSeq:NP_663531.1
UniGene:Mm.22453 PDB:3D2W PDBsum:3D2W ProteinModelPortal:Q921F2
SMR:Q921F2 STRING:Q921F2 PhosphoSite:Q921F2
REPRODUCTION-2DPAGE:Q921F2 PaxDb:Q921F2 PRIDE:Q921F2
Ensembl:ENSMUST00000084125 GeneID:230908 KEGG:mmu:230908
GeneTree:ENSGT00570000079202 InParanoid:Q3V0E7
EvolutionaryTrace:Q921F2 NextBio:380280 Bgee:Q921F2
CleanEx:MM_TARDBP Genevestigator:Q921F2
GermOnline:ENSMUSG00000041459 Uniprot:Q921F2
Length = 414
Score = 251 (93.4 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 87/296 (29%), Positives = 131/296 (44%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
L + G+ W T E L+DYF FGEVL + KD TG ++GFGF+ F + +V+ Q+
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG-PARTKKIFVGGLASTVTESDFKKYF 126
HMIDGR + K +P Q SP P R++K+FVG +T + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ------------SPDEPLRSRKVFVGRCTEDMTAEELQQFF 211
Query: 127 DQFGIITDVVVMYDHNTQRP-RGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
Q+G + DV + +P R F F+T+ +++ V + L + G V + A PK
Sbjct: 212 CQYGEVVDVFI------PKPFRAFAFVTF-ADDKVAQSLCGEDLIIKGISVHISNAEPKH 264
Query: 186 LSPGP-SRN-QLGTHNYGLSRVSSFLN----GYTQSYNPSSVGGYGLRIDG-RYGPVTIG 238
S R+ + G + G F N G N G G+ P +
Sbjct: 265 NSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGGNMGGGMNFGAFSINPAMMA 324
Query: 239 RSGFTTIGPGYGM-G-LNFEPNLSPSHG-----GGANLSPNLSYGRGLNPSFGGNS 287
+ + +GM G L + N S G G PN ++G G N G NS
Sbjct: 325 AAQ-AALQSSWGMMGMLASQQNQSGPSGNNQSQGSMQREPNQAFGSGNNSYSGSNS 379
Score = 122 (48.0 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+G + D + L+ +F +GEV++ I K R F F+ FAD VA+ + +
Sbjct: 192 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE 246
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+I G +V A P+ + N Q + G+PG
Sbjct: 247 DLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPG 281
Score = 120 (47.3 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 32/115 (27%), Positives = 54/115 (46%)
Query: 82 PRDDQNIQNRNNSS--IHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
P+D++ + ++S + +T + V GL TE D K YF FG + V V
Sbjct: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQ 194
D T +GFGF+ + E KV+ + H ++G+ + K K+ P R++
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSPDEPLRSR 191
Score = 45 (20.9 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 27/102 (26%), Positives = 40/102 (39%)
Query: 193 NQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRID--GRYGPVTIGRS-GFTTIGPG- 248
N G N+G ++ + Q+ SS G G+ + GP +S G P
Sbjct: 306 NMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGSMQREPNQ 365
Query: 249 -YGMGLNFEPNLSPSHGG---GANLSPNLSYGRGLNPSFGGN 286
+G G N + S S+ G G + N G G N FG +
Sbjct: 366 AFGSGNN---SYSGSNSGAPLGWGSASNAGSGSGFNGGFGSS 404
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 186 (70.5 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 41/103 (39%), Positives = 57/103 (55%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA--DPA 58
M + GKLF+GG+S+DTNE L F +G++ E V++KDR T R+RGFGF+ F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+ M +DGR + +A D NR+ GS G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG 99
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 56/170 (32%), Positives = 84/170 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
++G+ + V +A + S SR G G + F G S GG G
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSDNRSRGYRG----GSAGGRGFFRGGRGRGRGFSRGG-G 119
Query: 226 LRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSY 275
D YG G S F + GYG ++ S S GGG + S SY
Sbjct: 120 ---DRGYG----G-SRFESRSGGYGGSRDYYS--SRSQGGGYDRSSGGSY 159
Score = 68 (29.0 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 28/76 (36%), Positives = 36/76 (47%)
Query: 213 TQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP--GYGMGLNFEPNLSPSHGGGANLS 270
++ Y S GG G GR G GR GF+ G GYG G FE S +GG +
Sbjct: 90 SRGYRGGSAGGRGFFRGGR-GR---GR-GFSRGGGDRGYG-GSRFESR-SGGYGGSRDYY 142
Query: 271 PNLSYGRGLNPSFGGN 286
+ S G G + S GG+
Sbjct: 143 SSRSQGGGYDRSSGGS 158
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 225 (84.3 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 57/147 (38%), Positives = 82/147 (55%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSV 221
+ H+++G++VE KRAV +E S P G H L+ F+ G+ S
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP-----GAH---LTVKKIFVGGFGGSRGG--- 118
Query: 222 GGYGLRIDGRYGPVTIGRSGFTTIGPG 248
GGYG DG G G G + G G
Sbjct: 119 GGYGGSGDGYNG---FGNDG-SNFGGG 141
Score = 201 (75.8 bits), Expect = 6.0e-19, Sum P(2) = 6.0e-19
Identities = 45/115 (39%), Positives = 68/115 (59%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLAST 116
+ + H +DGR VE K+AV R+D PG T KKIFVGG +
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGFGGS 115
Score = 51 (23.0 bits), Expect = 6.0e-19, Sum P(2) = 6.0e-19
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 221 VGGYG-LRIDGRYGPVTIGRSGFTTIGPGYGMG 252
VGG+G R G YG G +GF G +G G
Sbjct: 109 VGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGG 141
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 186 (70.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 41/103 (39%), Positives = 57/103 (55%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA--DPA 58
M + GKLF+GG+S+DTNE L F +G++ E V++KDR T R+RGFGF+ F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+ M +DGR + +A D NR+ GS G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG 99
Score = 157 (60.3 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 47/151 (31%), Positives = 75/151 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGG-- 223
++G+ + V +A + S SR G G F G + S GG
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSDNRSRGYRGGSAGGRG---FFRGGRGRGRGFSRGGGDR 121
Query: 224 -YG-LRIDGRYGPVTIGRSGFTTIGPGYGMG 252
YG R + R G R +++ G G G
Sbjct: 122 GYGGSRFESRSGGYGGSRDYYSSRSQGGGYG 152
Score = 63 (27.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 28/79 (35%), Positives = 34/79 (43%)
Query: 213 TQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP--GYGMGLNFEPNLSPSHGGGANLS 270
++ Y S GG G GR G GR GF+ G GYG G FE S +GG +
Sbjct: 90 SRGYRGGSAGGRGFFRGGR-GR---GR-GFSRGGGDRGYG-GSRFESR-SGGYGGSRDYY 142
Query: 271 PNLSYGRGLNPSFGGNSNR 289
+ S G G G S R
Sbjct: 143 SSRSQGGGYGDRSSGGSYR 161
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 183 (69.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA--DPA 58
M ++ GKL +GG+S+DTNE L F +G++ E V++KDR T R+RGFGF+ F D A
Sbjct: 1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+ M +DGR + +A ++ +NR+ GS G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA----GKSSENRSRGYRGGSTG 99
Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 47/150 (31%), Positives = 73/150 (48%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+ VGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGG-- 223
++G+ + V +A + S SR G G F G + S GG
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSENRSRGYRGGSTGGRG---FFRGGRGRGRGFSRGGGDR 121
Query: 224 -YG-LRIDGRYGPVTIGRSGFTTIGPG-YG 250
YG R D R G R + + G YG
Sbjct: 122 GYGGSRFDSRSGGYNGSRDYYNSRSQGGYG 151
Score = 66 (28.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 18/38 (47%), Positives = 18/38 (47%)
Query: 196 GTHNYGLSRVSSFLNGYTQS---YNPSSVGGYGLRIDG 230
G YG SR S GY S YN S GGYG R G
Sbjct: 119 GDRGYGGSRFDSRSGGYNGSRDYYNSRSQGGYGDRSSG 156
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 226 (84.6 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 47/130 (36%), Positives = 74/130 (56%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
L + G+ W T E L++YF FGEVL + KD TG ++GFGF+ F + +V+ Q+
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFD 127
HMIDGR + K +P Q+ Q+ P R++K+FVG +TE + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQS-QDE----------PLRSRKVFVGRCTEDMTEDELREFFS 212
Query: 128 QFGIITDVVV 137
Q+G + DV +
Sbjct: 213 QYGDVMDVFI 222
Score = 132 (51.5 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+G + D ED LR++F +G+V++ I K R F F+ FAD +A+ + +
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE 246
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSP 100
+I G +V A P+ + N Q + G+P
Sbjct: 247 DLIIKGISVHISNAEPKHNSNRQLERSGRFGGNP 280
Score = 123 (48.4 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 32/115 (27%), Positives = 55/115 (47%)
Query: 82 PRDDQNIQNRNNSS--IHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
P+D++ + ++S + +T + V GL TE D K+YF FG + V V
Sbjct: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQ 194
D T +GFGF+ + E KV+ + H ++G+ + K K+ P R++
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSR 191
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 226 (84.6 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 47/130 (36%), Positives = 74/130 (56%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
L + G+ W T E L++YF FGEVL + KD TG ++GFGF+ F + +V+ Q+
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFD 127
HMIDGR + K +P Q+ Q+ P R++K+FVG +TE + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQS-QDE----------PLRSRKVFVGRCTEDMTEDELREFFS 212
Query: 128 QFGIITDVVV 137
Q+G + DV +
Sbjct: 213 QYGDVMDVFI 222
Score = 123 (48.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+G + D ED LR++F +G+V++ I K R F F+ FAD +A+ + +
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE 246
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQ 89
+I G +V A P+ + N Q
Sbjct: 247 DLIIKGISVHISNAEPKHNSNRQ 269
Score = 123 (48.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 32/115 (27%), Positives = 55/115 (47%)
Query: 82 PRDDQNIQNRNNSS--IHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
P+D++ + ++S + +T + V GL TE D K+YF FG + V V
Sbjct: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQ 194
D T +GFGF+ + E KV+ + H ++G+ + K K+ P R++
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSR 191
>RGD|1563684 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0032496 "response to
lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
REFSEQ:XM_003752953 Ncbi:XP_003753001
Length = 226
Score = 222 (83.2 bits), Expect = 6.3e-18, P = 6.3e-18
Identities = 65/191 (34%), Positives = 88/191 (46%)
Query: 100 PGP-ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158
PG A+ KK+FVGGL V E D ++F QFG + ++ D + + RGFGF+ + S +
Sbjct: 10 PGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHD 69
Query: 159 AVDKVLLKTFHELNGKMVEVKRAVPKE---LSPGPSRNQLGTHNYGLSRVSSFLNGYTQS 215
A DK + FH + G VEVK+AVPKE G +R G G R G +
Sbjct: 70 AADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARGGRGGGRGRGGGGGGGGGRD 129
Query: 216 YNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLS- 274
N + GG G YG G G+ G G G G + GG + S + S
Sbjct: 130 QNGLAKGGGGGY--NSYG----GYGGYGAYGGGGGGGSYGGSDYGNGFGGFGSYSQHQSS 183
Query: 275 YGRGLNPSFGG 285
YG + GG
Sbjct: 184 YGPMKSGGGGG 194
Score = 177 (67.4 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 38/99 (38%), Positives = 55/99 (55%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLF+GG+ D E L ++F FG V +A I+ D+ +G+ RGFGF+ F A++ +
Sbjct: 18 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVV 77
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPAR 104
K H I G VE KKAVP++D + + G G R
Sbjct: 78 KFHPIQGHRVEVKKAVPKEDIHAGGGGARAARGGRGGGR 116
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 186 (70.5 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 41/103 (39%), Positives = 57/103 (55%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA--DPA 58
M + GKLF+GG+S+DTNE L F +G++ E V++KDR T R+RGFGF+ F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+ M +DGR + +A D NR+ GS G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG 99
Score = 160 (61.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 57/179 (31%), Positives = 88/179 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
++G+ + V +A + S SR G G + F G S GG G
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSDNRSRGYRG----GSAGGRGFFRGGRGRGRGFSRGG-G 119
Query: 226 LRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNPSFG 284
D YG G F + GYG ++ + S S GG ++ S SY R S+G
Sbjct: 120 ---DRGYG----GNR-FESRSGGYGGSRDYYSSRSQS-GGYSDRSSGGSY-RDSYDSYG 168
Score = 57 (25.1 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 27/79 (34%), Positives = 34/79 (43%)
Query: 213 TQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP--GYGMGLNFEPNLSPSHGGGANLS 270
++ Y S GG G GR G GR GF+ G GYG G FE S +GG +
Sbjct: 90 SRGYRGGSAGGRGFFRGGR-GR---GR-GFSRGGGDRGYG-GNRFESR-SGGYGGSRDYY 142
Query: 271 PNLSYGRGLNPSFGGNSNR 289
+ S G + G S R
Sbjct: 143 SSRSQSGGYSDRSSGGSYR 161
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 186 (70.5 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 41/103 (39%), Positives = 57/103 (55%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA--DPA 58
M + GKLF+GG+S+DTNE L F +G++ E V++KDR T R+RGFGF+ F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+ M +DGR + +A D NR+ GS G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG 99
Score = 157 (60.3 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 54/170 (31%), Positives = 84/170 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
++G+ + V +A + S SR G G + F G S GG G
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSDNRSRGYRG----GSAGGRGFFRGGRGRGRGFSRGG-G 119
Query: 226 LRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSY 275
D YG G F + GYG ++ + S S GG ++ S SY
Sbjct: 120 ---DRGYG----GNR-FESRSGGYGGSRDYYSSRSQS-GGYSDRSSGGSY 160
Score = 57 (25.1 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 27/79 (34%), Positives = 34/79 (43%)
Query: 213 TQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP--GYGMGLNFEPNLSPSHGGGANLS 270
++ Y S GG G GR G GR GF+ G GYG G FE S +GG +
Sbjct: 90 SRGYRGGSAGGRGFFRGGR-GR---GR-GFSRGGGDRGYG-GNRFESR-SGGYGGSRDYY 142
Query: 271 PNLSYGRGLNPSFGGNSNR 289
+ S G + G S R
Sbjct: 143 SSRSQSGGYSDRSSGGSYR 161
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 186 (70.5 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 41/103 (39%), Positives = 57/103 (55%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA--DPA 58
M + GKLF+GG+S+DTNE L F +G++ E V++KDR T R+RGFGF+ F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+ M +DGR + +A D NR+ GS G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG 99
Score = 157 (60.3 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 54/170 (31%), Positives = 84/170 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
++G+ + V +A + S SR G G + F G S GG G
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSDNRSRGYRG----GSAGGRGFFRGGRGRGRGFSRGG-G 119
Query: 226 LRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSY 275
D YG G F + GYG ++ + S S GG ++ S SY
Sbjct: 120 ---DRGYG----GNR-FESRSGGYGGSRDYYSSRSQS-GGYSDRSSGGSY 160
Score = 57 (25.1 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 27/79 (34%), Positives = 34/79 (43%)
Query: 213 TQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP--GYGMGLNFEPNLSPSHGGGANLS 270
++ Y S GG G GR G GR GF+ G GYG G FE S +GG +
Sbjct: 90 SRGYRGGSAGGRGFFRGGR-GR---GR-GFSRGGGDRGYG-GNRFESR-SGGYGGSRDYY 142
Query: 271 PNLSYGRGLNPSFGGNSNR 289
+ S G + G S R
Sbjct: 143 SSRSQSGGYSDRSSGGSYR 161
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 186 (70.5 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 41/103 (39%), Positives = 57/103 (55%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA--DPA 58
M + GKLF+GG+S+DTNE L F +G++ E V++KDR T R+RGFGF+ F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+ M +DGR + +A D NR+ GS G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG 99
Score = 157 (60.3 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 54/170 (31%), Positives = 84/170 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
++G+ + V +A + S SR G G + F G S GG G
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSDNRSRGYRG----GSAGGRGFFRGGRGRGRGFSRGG-G 119
Query: 226 LRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSY 275
D YG G F + GYG ++ + S S GG ++ S SY
Sbjct: 120 ---DRGYG----GNR-FESRSGGYGGSRDYYSSRSQS-GGYSDRSSGGSY 160
Score = 57 (25.1 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 27/79 (34%), Positives = 34/79 (43%)
Query: 213 TQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP--GYGMGLNFEPNLSPSHGGGANLS 270
++ Y S GG G GR G GR GF+ G GYG G FE S +GG +
Sbjct: 90 SRGYRGGSAGGRGFFRGGR-GR---GR-GFSRGGGDRGYG-GNRFESR-SGGYGGSRDYY 142
Query: 271 PNLSYGRGLNPSFGGNSNR 289
+ S G + G S R
Sbjct: 143 SSRSQSGGYSDRSSGGSYR 161
>UNIPROTKB|F1MZQ6 [details] [associations]
symbol:F1MZQ6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02073436 IPI:IPI00689139
Ensembl:ENSBTAT00000030499 Uniprot:F1MZQ6
Length = 284
Score = 221 (82.9 bits), Expect = 8.2e-18, P = 8.2e-18
Identities = 77/286 (26%), Positives = 132/286 (46%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAV-IMKDRATGRARGFGFIVFADPAVAERVVMQ 66
LF+ G+S++T + + E + + +M+D T +R FGF+ +A + +
Sbjct: 1 LFMEGLSFETTNESNNE------ECSQTMWVMRDPNTKCSRSFGFVTYATVEEVDATMSA 54
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYF 126
+ + R VE K+AV +D R ++ + KKIF G E + YF
Sbjct: 55 RPLKVDRVVEPKRAVSGEDSQ---RLDAHL-------TVKKIFAGDNKEDAEEHHLRDYF 104
Query: 127 DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK-E 185
+Q+G D + + Q+ RGF F+ D +++DK +++ H +NG +V++ + K E
Sbjct: 105 EQYGKTGDQNQNHQGSGQK-RGFAFVVSDDHDSIDKTVIQKNHTVNGHNCDVRKTLSKQE 163
Query: 186 LSPGPSRNQL-GTHNYGLSRVSSF--LNGYTQSYNPSSVGGYGLRIDG-RYGPVTIGRSG 241
++ S +L G+ N G R F + + N S G+G G RYG G +G
Sbjct: 164 MASVSSSQRLKGSRNCGGGRGDGFGGNDNFGCGGNFSGHDGFGGNHGGGRYGGCGDGYNG 223
Query: 242 FTTIGPGYGMGLNFE-PNLSPSHGG-GANLSPNLSYGRGLNPSFGG 285
F G +G G + + N + + G + N GRG +P GG
Sbjct: 224 FDNNGSNFGGGRSHDFANYNNQYSNFGPMIGRNFG-GRGSDPYGGG 268
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F G D E LRDYF+ +G+ + + +G+ RGF F+V D ++ V+Q
Sbjct: 85 KIFAGDNKEDAEEHHLRDYFEQYGKTGDQN-QNHQGSGQKRGFAFVVSDDHDSIDKTVIQ 143
Query: 67 K-HMIDGRTVEAKKAVPRDD 85
K H ++G + +K + + +
Sbjct: 144 KNHTVNGHNCDVRKTLSKQE 163
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 220 (82.5 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 48/131 (36%), Positives = 72/131 (54%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
L + G+ W T E L+DYF FGEVL + KD TG ++GFGF+ F + +V+ Q+
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG-PARTKKIFVGGLASTVTESDFKKYF 126
HMIDGR + K +P Q SP P R++K+FVG +T + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ------------SPDEPLRSRKVFVGRCTEDMTADELRQFF 211
Query: 127 DQFGIITDVVV 137
Q+G + DV +
Sbjct: 212 CQYGEVVDVFI 222
Score = 124 (48.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+F+G + D D LR +F +GEV++ I K R F F+ FAD VA+ + +
Sbjct: 192 KVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCGE 246
Query: 67 KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSP 100
+I G +V A P+ + N Q + G+P
Sbjct: 247 DLIIKGISVHISNAEPKHNSNRQLERSGRFGGNP 280
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 32/115 (27%), Positives = 54/115 (46%)
Query: 82 PRDDQNIQNRNNSS--IHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
P+D++ + ++S + +T + V GL TE D K YF FG + V V
Sbjct: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQ 194
D T +GFGF+ + E KV+ + H ++G+ + K K+ P R++
Sbjct: 138 DIKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSPDEPLRSR 191
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 220 (82.5 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 48/131 (36%), Positives = 72/131 (54%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
L + G+ W T E L+DYF FGEVL + KD TG ++GFGF+ F + +V+ Q+
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG-PARTKKIFVGGLASTVTESDFKKYF 126
HMIDGR + K +P Q SP P R++K+FVG +T + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ------------SPDEPLRSRKVFVGRCTEDMTAEELQQFF 211
Query: 127 DQFGIITDVVV 137
Q+G + DV +
Sbjct: 212 CQYGEVVDVFI 222
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 32/115 (27%), Positives = 54/115 (46%)
Query: 82 PRDDQNIQNRNNSS--IHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
P+D++ + ++S + +T + V GL TE D K YF FG + V V
Sbjct: 78 PKDNKRKMDEADASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQ 194
D T +GFGF+ + E KV+ + H ++G+ + K K+ P R++
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSPDEPLRSR 191
>UNIPROTKB|D4A9S4 [details] [associations]
symbol:Tardbp "Protein Tardbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310906 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00197538 ProteinModelPortal:D4A9S4
Ensembl:ENSRNOT00000017922 ArrayExpress:D4A9S4 Uniprot:D4A9S4
Length = 288
Score = 220 (82.5 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 48/131 (36%), Positives = 72/131 (54%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
L + G+ W T E L+DYF FGEVL + KD TG ++GFGF+ F + +V+ Q+
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG-PARTKKIFVGGLASTVTESDFKKYF 126
HMIDGR + K +P Q SP P R++K+FVG +T + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ------------SPDEPLRSRKVFVGRCTEDMTAEELQQFF 211
Query: 127 DQFGIITDVVV 137
Q+G + DV +
Sbjct: 212 CQYGEVVDVFI 222
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 32/115 (27%), Positives = 54/115 (46%)
Query: 82 PRDDQNIQNRNNSS--IHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY 139
P+D++ + ++S + +T + V GL TE D K YF FG + V V
Sbjct: 78 PKDNKRKMDEADASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQ 194
D T +GFGF+ + E KV+ + H ++G+ + K K+ P R++
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSPDEPLRSR 191
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 186 (70.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 41/103 (39%), Positives = 57/103 (55%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA--DPA 58
M + GKLF+GG+S+DTNE L F +G++ E V++KDR T R+RGFGF+ F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+ M +DGR + +A D NR+ GS G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSSG 99
Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGG-- 223
++G+ + V +A + S SR G + G F G + S GG
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSDNRSRGYRGGSSGGRG---FFRGGRGRGRGFSRGGGDR 121
Query: 224 -YG-LRIDGRYGPVTIGRSGFTTIGPG--YG 250
YG R + R G R +++ G YG
Sbjct: 122 GYGGSRFESRSGGYGGSRDYYSSRSQGGSYG 152
Score = 55 (24.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 27/79 (34%), Positives = 33/79 (41%)
Query: 213 TQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP--GYGMGLNFEPNLSPSHGGGANLS 270
++ Y S GG G GR G GR GF+ G GYG G FE S +GG +
Sbjct: 90 SRGYRGGSSGGRGFFRGGR-GR---GR-GFSRGGGDRGYG-GSRFESR-SGGYGGSRDYY 142
Query: 271 PNLSYGRGLNPSFGGNSNR 289
+ S G G S R
Sbjct: 143 SSRSQGGSYGDRSSGGSYR 161
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 219 (82.2 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GK+FIGG+SW T+ D LRDYF FGE+ E ++M+D T R+RGFGF+ FADPA ++V+
Sbjct: 21 GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 80
Query: 66 QKHM-IDGRTVEAKK 79
Q H +D +T +K
Sbjct: 81 QPHHELDSKTCRRQK 95
Score = 159 (61.0 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 36/89 (40%), Positives = 50/89 (56%)
Query: 86 QNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQR 145
Q N S H PG K+F+GGL+ + + YF +FG I + +VM D T+R
Sbjct: 7 QGTSGSANDSQH-DPG-----KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60
Query: 146 PRGFGFITYDSEEAVDKVLLKTFHELNGK 174
RGFGF+T+ +VDKVL + HEL+ K
Sbjct: 61 SRGFGFVTFADPASVDKVLGQPHHELDSK 89
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 186 (70.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 41/103 (39%), Positives = 57/103 (55%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA--DPA 58
M + GKLF+GG+S+DTNE L F +G++ E V++KDR T R+RGFGF+ F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPG 101
+ M +DGR + +A D NR+ GS G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG 99
Score = 151 (58.2 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLL 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRA 181
++G+ + V +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 54 (24.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 26/77 (33%), Positives = 33/77 (42%)
Query: 213 TQSYNPSSVGGYGLRIDGRYGPVTIGRSGFTTIGP--GYGMGLNFEPNLSPSHGGGANLS 270
++ Y S GG G GR G GR GF+ G GYG G FE S +GG +
Sbjct: 90 SRGYRGGSAGGRGFFRGGR-GR---GR-GFSRGGGDRGYG-GNRFESR-SGGYGGSRDYY 142
Query: 271 PNLSYGRGLNPSFGGNS 287
+ S G + G S
Sbjct: 143 SSRSQSGGYSDRSSGGS 159
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 238 (88.8 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 73/242 (30%), Positives = 110/242 (45%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV--VM 65
LF+G +SW+ E+ L F+ FGE L A IM +R TGR+RGFG++ F + A A + M
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGE-LSARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 66 QKHMIDGRTVEAKKAVPR----DDQNIQNR--NNSSIHGSPGPARTKKIFVGGLASTVTE 119
++H IDGR + A R D + R N + G + +FVG L + E
Sbjct: 338 KEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPFSANE 397
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
+ F G + + + D + RP+GFG++ Y S VD+ K ++EL G ++
Sbjct: 398 DSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSS---VDEAR-KAYNELQGAEID-G 452
Query: 180 RAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDGRYGPVTIGR 239
R + + S + N G G G + GG+G R G G R
Sbjct: 453 RPIRLDFSTPRANNGGGGGGRGGFGGRGGRGG-PRGGGRGGRGGFGGRGGGAGGAPNRAR 511
Query: 240 SG 241
G
Sbjct: 512 GG 513
Score = 110 (43.8 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E LF+G + + NED + + F G VL + D +GR +GFG++ ++ A +
Sbjct: 382 ESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKA 441
Query: 64 V--MQKHMIDGRTVEAKKAVPR 83
+Q IDGR + + PR
Sbjct: 442 YNELQGAEIDGRPIRLDFSTPR 463
Score = 50 (22.7 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 25/64 (39%), Positives = 30/64 (46%)
Query: 222 GGYGLRIDGRYGPVTIGRSGFTTIGPGYGMGLNFEPNLSPSHGGGANLSPNLSYGRGLNP 281
GG+G R GR GP GR G G G+G GGGA +PN + G G+ P
Sbjct: 474 GGFGGR-GGRGGPRGGGRGGR---G-GFG-----------GRGGGAGGAPNRARG-GI-P 515
Query: 282 SFGG 285
F G
Sbjct: 516 EFKG 519
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 217 (81.4 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 47/124 (37%), Positives = 74/124 (59%)
Query: 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQK 67
+FIGG+SWDT + L+DYF FGEV++ + D TGR+RGFGF++F + ++V+ QK
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 68 -HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYF 126
H ++G+ ++ K+A + ++ + P KKIFVGGL+ E ++YF
Sbjct: 61 EHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREYF 104
Query: 127 DQFG 130
FG
Sbjct: 105 GGFG 108
Score = 178 (67.7 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 108 IFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167
+F+GGL+ T+ D K YF +FG + D + D T R RGFGF+ + E+VDKV+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 168 FHELNGKMVEVKRA 181
H+LNGK+++ KRA
Sbjct: 61 EHKLNGKVIDPKRA 74
>UNIPROTKB|F1N9H6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0008266 "poly(U) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:AADN02043198 EMBL:AADN02043199 EMBL:AADN02043200
EMBL:AADN02043201 IPI:IPI00818302 ProteinModelPortal:F1N9H6
Ensembl:ENSGALT00000011697 ArrayExpress:F1N9H6 Uniprot:F1N9H6
Length = 273
Score = 217 (81.4 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 58/148 (39%), Positives = 82/148 (55%)
Query: 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
RTKKIFVGGL+ T D K+YF+QFG ++ + + + GFGF+T++SE+ V+KV
Sbjct: 18 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVSLLSGVGSKSFAFSSGFGFVTFESEDIVEKV 77
Query: 164 LLKTFHELNGKMVEVKRAVPKE-LSP-GPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSV 221
FHE+N KMVE K+A PKE +SP G +R + YG+ +F+ G +
Sbjct: 78 CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMD---AFMLG---------I 125
Query: 222 GGYGLRIDGRYGPVTIGRSGFTTIGPGY 249
G G G + T +T I PGY
Sbjct: 126 GMLGY--PG-FQAATYASRSYTGIAPGY 150
Score = 129 (50.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-M 65
K+F+GG+S +T + ++ YF+ FG+V + ++ + GFGF+ F + E+V +
Sbjct: 21 KIFVGGLSVNTTVEDVKQYFEQFGKVSLLSGVGSKSFAFSSGFGFVTFESEDIVEKVCEI 80
Query: 66 QKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 81 HFHEINNKMVECKKAQPKE 99
Score = 45 (20.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 187 SPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG 230
SPGP G N S VSS+++ + + PS+ G+G + G
Sbjct: 223 SPGPMAELYGAANQD-SGVSSYISAASPA--PST--GFGHSLGG 261
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 187 (70.9 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 38/83 (45%), Positives = 54/83 (65%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP--- 57
M E GKLF+GG++++T+E L D+F +FG + E V++KDR T R+RGFGFI F +P
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 58 AVAERVVMQKHMIDGRTVEAKKA 80
+VA R M +DGR + A
Sbjct: 61 SVAMRA-MNGESLDGRQIRVDHA 82
Score = 157 (60.3 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 44/123 (35%), Positives = 61/123 (49%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ + E V ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS-VAMR 65
Query: 167 TFH--ELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLN-GYTQS-YNPSSVG 222
+ L+G+ + V A + + G G H G S + GY Y S G
Sbjct: 66 AMNGESLDGRQIRVDHA--GKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123
Query: 223 GYG 225
GYG
Sbjct: 124 GYG 126
Score = 49 (22.3 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 184 KELSPGPSRNQLGTHNYGLSRVSSFLNGYTQS--YNPSSVGGYGLRIDGRY 232
+ S G G+ Y SR + GY +S YN + GGY G Y
Sbjct: 101 RSYSRGGGDQGYGSGRYYDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNY 151
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 214 (80.4 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 53/190 (27%), Positives = 93/190 (48%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
KLF+G + ++ + +L F++ G V ++ D+ TGR+RGFGF+ + + E Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 67 --KHMIDGRT--VEAKKAVPRDDQNIQNRNNSSIH---------GSPGPARTKKIFVGGL 113
+ +DGR V A P+ + SS G G +++VG L
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 114 ASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH--EL 171
+ V + + F + G + + V+YD ++ R +GFGF+TYDS + V + K+ +L
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI-KSLDGADL 270
Query: 172 NGKMVEVKRA 181
+G+ + V A
Sbjct: 271 DGRQIRVSEA 280
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 230 (86.0 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 47/136 (34%), Positives = 75/136 (55%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ + L + G+ W T+E L+DYF FGEV+ + +D TG ++GFGF+ F D
Sbjct: 106 DQKTSDLIVLGLPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQS 165
Query: 62 RVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESD 121
+V+ Q+HMIDGR + K +P Q I P R++K+FVG +T +
Sbjct: 166 KVMTQRHMIDGRWCDCK--LPNSKQGIDE-----------PMRSRKVFVGRCTEDMTADE 212
Query: 122 FKKYFDQFGIITDVVV 137
+++F Q+G +TDV +
Sbjct: 213 LRQFFMQYGEVTDVFI 228
Score = 37 (18.1 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 308 SSPSRNLWGNGNLNYALNTA 327
SS S +GN NLN A+ A
Sbjct: 306 SSSSLGNFGNFNLNPAMMAA 325
WARNING: HSPs involving 917 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.135 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 475 397 0.00097 117 3 11 22 0.45 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1167
No. of states in DFA: 596 (63 KB)
Total size of DFA: 233 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.61u 0.10s 33.71t Elapsed: 00:00:01
Total cpu time: 33.67u 0.10s 33.77t Elapsed: 00:00:01
Start: Mon May 20 21:30:17 2013 End: Mon May 20 21:30:18 2013
WARNINGS ISSUED: 2