BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011912
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 149/192 (77%), Gaps = 4/192 (2%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
M+ + GKLF+GGISW+T+ED+LR++F +GEV +A++M+D+ TGR RGFGF++F+DP+V
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 ERVVMQKHMIDGRTVEAKKAVPRDDQNIQNR----NNSSIHGSPGPARTKKIFVGGLAST 116
+RV+ +KH ID R V+ K+A+ R++Q + R N S G +TKKIFVGGL T
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 117 VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+T+ +F++YF+ +G +TDV +MYD T RPRGFGF+++DSE+AVD VL KTFH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 177 EVKRAVPKELSP 188
EVKRA+PK+ +P
Sbjct: 181 EVKRALPKDANP 192
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 123/186 (66%), Gaps = 13/186 (6%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ + GK+FIGG+SW T+ D LRDYF FGE+ E ++M+D T R+RGFGF+ FADPA +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 RVVMQKHM-IDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ Q H +D +T++ K A PR Q RTKKIFVGGL++
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMV------------TRTKKIFVGGLSANTVVE 124
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV FHE+N KMVE K+
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 184
Query: 181 AVPKEL 186
A PKE+
Sbjct: 185 AQPKEV 190
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 128/196 (65%), Gaps = 17/196 (8%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
E GK+FIGG++W+T +D LRDYF+ FGEVL+ +M+D TGR+RGFGF+ F +P V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 64 VMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123
+ ++H +DG+ ++ K+A+PR++Q +T K+FVGG+ TE +F+
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQE----------------KTAKMFVGGVPGDCTEEEFR 264
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+F+QFG + D +M D +T RPRGFGF+TY++E AV+ + + + ++GK VEVKRA P
Sbjct: 265 NFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 324
Query: 184 K-ELSPGPSRNQLGTH 198
K L R+Q G H
Sbjct: 325 KASLRDSHDRHQHGYH 340
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 88 IQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPR 147
+++ +++ SP K+F+GGL T+ + YF+QFG + D VM D T R R
Sbjct: 145 MESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSR 204
Query: 148 GFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
GFGF+T+ + + V++V+ K H L+GK+++ KRA+P+E
Sbjct: 205 GFGFLTFKNPKCVNEVMSKEHH-LDGKIIDPKRAIPRE 241
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 138/225 (61%), Gaps = 4/225 (1%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP-AVAER 62
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSP--GPARTKKIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q + R P +++ KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+ ++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
A P++ S + Q G +G S NG+ P+ GYG
Sbjct: 188 AEPRD-SKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYG 231
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 123/186 (66%), Gaps = 13/186 (6%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ + GK+FIGG+SW T+ D LRDYF FGE+ E ++M+D T R+RGFGF+ FADPA +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 RVVMQKHM-IDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ Q H +D +T++ K A PR Q RTKKIFVGGL++
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMV------------TRTKKIFVGGLSANTVVE 124
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V+KV FHE+N KMVE K+
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 184
Query: 181 AVPKEL 186
A PKE+
Sbjct: 185 AQPKEV 190
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 139/225 (61%), Gaps = 4/225 (1%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP-AVAER 62
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP--ARTKKIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q + R P +++ KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+ ++YF +FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
A P++ S + Q G +G V + NG+ P+ GYG
Sbjct: 188 AEPRD-SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 231
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 188 bits (478), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 147/243 (60%), Gaps = 26/243 (10%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP-AVAER 62
E+GKLF+GG+ W T ++ LR YF +GEV++ VIMKD+ T ++RGFGF+ F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP---ARTKKIFVGGLASTVTE 119
+ + H +DGR ++ K PR Q ++R +R+ KIFVGG+ E
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGE 127
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
++ K+YF++FG++T+VV++YD QRPRGFGFIT++ E++VD+ + FH++ GK VEVK
Sbjct: 128 TELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 187
Query: 180 RAVP---KELSPGPSRNQLGTHNYGLSRVSSFLNGYT-------QSYNP--------SSV 221
RA P K +PGP G++ +G + S NG+T Q Y+P ++
Sbjct: 188 RAEPRDSKSQTPGPP----GSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQTI 243
Query: 222 GGY 224
GGY
Sbjct: 244 GGY 246
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 122/182 (67%), Gaps = 13/182 (7%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65
GK+FIGG+SW T+ + LRDYF +G++ EA++MKD T R+RGFGF+ F+DP ++V+
Sbjct: 29 GKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLT 88
Query: 66 Q-KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
Q H +DG+ V+ K A PR R + + RTKKIFVGGL++ T D K
Sbjct: 89 QGTHELDGKKVDPKVAFPR-------RAHPKMV-----TRTKKIFVGGLSAPTTLEDVKS 136
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF+QFG I D ++M+D T R RGFGF+T+ SE+ VDKV FHE+N KMVE K+A PK
Sbjct: 137 YFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPK 196
Query: 185 EL 186
E+
Sbjct: 197 EV 198
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+F+GGL+ + + YF ++G I++ +VM D T+R RGFGF+T+ +VDKVL +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 167 TFHELNGKMVEVKRAVPKELSP 188
HEL+GK V+ K A P+ P
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHP 111
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 128/199 (64%), Gaps = 15/199 (7%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T ++ LR+YF FGEV E ++M+D T R+RGFGF+ F D A ++V+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 67 -KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q RTKKIFVGGL+ T D K+Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMV------------TRTKKIFVGGLSVNTTVEDVKQY 128
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -LSP-GPSRNQLGTHNYGL 202
+SP G +R + YG+
Sbjct: 189 VMSPTGSARGRSRVMPYGM 207
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 182 bits (461), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 127/199 (63%), Gaps = 15/199 (7%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T ++ LR+YF FGEV E ++M+D T R+RGFGF+ F D A ++V+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 67 -KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q RTKKIFVGGL+ T D K Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMV------------TRTKKIFVGGLSVNTTVEDVKHY 128
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -LSP-GPSRNQLGTHNYGL 202
+SP G +R + YG+
Sbjct: 189 VMSPTGSARGRSRVMPYGM 207
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 127/199 (63%), Gaps = 15/199 (7%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SW T ++ LR+YF FGEV E ++M+D T R+RGFGF+ F D A ++V+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 67 -KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q RTKKIFVGGL+ T D K Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMV------------TRTKKIFVGGLSVNTTVEDVKHY 128
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V+KV FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -LSP-GPSRNQLGTHNYGL 202
+SP G +R + YG+
Sbjct: 189 VMSPTGSARGRSRVMPYGM 207
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 119/187 (63%), Gaps = 16/187 (8%)
Query: 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVA 60
+ E K+FIGG++WDT ED LR+YF +G V + IMKD ATGR+RGFGF+ F P+
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213
Query: 61 ERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+ VV +H++DG+ ++ K+A+PRD+Q+ +T KIFVGG+ V
Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQD----------------KTGKIFVGGIGPDVRPK 257
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+F+++F Q+G I D +M D +T + RGFGF+TYDS +AVD+V F + + +E+KR
Sbjct: 258 EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKR 317
Query: 181 AVPKELS 187
A P+ +
Sbjct: 318 AEPRHMQ 324
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 123/193 (63%), Gaps = 13/193 (6%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E E GKLF+GG+SW+T ++ L YF FG++++ V+MK+ +GR+RGFGF+ FADP
Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62
Query: 62 RVVMQ-KHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
V+ H +DGRT++ K PR Q P K+F+GGL S VTE+
Sbjct: 63 HVLQNGPHTLDGRTIDPKPCNPRTLQ------------KPKKGGGYKVFLGGLPSNVTET 110
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
D + +F+++G +T+VV+MYD ++ RGFGF++++ E +V+ V + + LNGK VE+K+
Sbjct: 111 DLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKK 170
Query: 181 AVPKELSPGPSRN 193
A P++ S G + N
Sbjct: 171 AEPRDGSGGQNSN 183
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 112/186 (60%), Gaps = 18/186 (9%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V KVL K FH ++G E+K
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 233
Query: 181 AVPKEL 186
A PKE+
Sbjct: 234 AQPKEV 239
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 95 SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITY 154
I+ S K+FVGGL+ ++ D K YF +FG + D + D NT R RGFGFI +
Sbjct: 64 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 123
Query: 155 DSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
+V+KVL + H L+G++++ K+A+ + P
Sbjct: 124 KDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 113/187 (60%), Gaps = 19/187 (10%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
E + GK+F+GG+SWDT++ L+DYF FGEV++ I D TGR+RGFGFI+F D A E
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 124
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGL-ASTVTE 119
+V+ QK H +DGR ++ KKA+ ++ P KKIFVGGL + TE
Sbjct: 125 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPESPTE 167
Query: 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
++YF +FG I + + D + RGF FIT+ EE V KVL K FH ++G E+K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
Query: 180 RAVPKEL 186
A PKE+
Sbjct: 228 VAQPKEV 234
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 95 SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITY 154
I+ S K+FVGGL+ ++ D K YF +FG + D + D NT R RGFGFI +
Sbjct: 58 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 117
Query: 155 DSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 188
+V+KVL + H L+G++++ K+A+ + P
Sbjct: 118 KDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 151
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 117/182 (64%), Gaps = 11/182 (6%)
Query: 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64
L K+F+GG++ +T +D +R+++ FGE+ + ++M+D T R+RGFGF+ F+ + +
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
Query: 65 MQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123
Q+ H+IDG+TV+ K+AVPRDD+N N S TK+++V G+ TE
Sbjct: 82 KQRPHIIDGKTVDPKRAVPRDDKNRSESNVS----------TKRLYVSGVREDHTEDMLT 131
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
+YF ++G +T ++ D TQ+PRGFGF+T+D ++VD+ +L+ H +NG +V++ +
Sbjct: 132 EYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLS 191
Query: 184 KE 185
K+
Sbjct: 192 KD 193
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 98 GSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSE 157
S P +KIFVGGL S T+ ++++ QFG ITD++VM D T+R RGFGF+T+ +
Sbjct: 15 ASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK 74
Query: 158 EAVDKVLLKTFHELNGKMVEVKRAVPKE 185
VD + + H ++GK V+ KRAVP++
Sbjct: 75 TEVDAAMKQRPHIIDGKTVDPKRAVPRD 102
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 117/184 (63%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+ KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A +
Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 66
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H IDGR VE K+AV R++ G PG T KK+FVGG+ E
Sbjct: 67 MAARPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHH 115
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A
Sbjct: 116 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Query: 182 VPKE 185
+ ++
Sbjct: 176 LSRQ 179
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKP 93
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 117/184 (63%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+ KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A +
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H IDGR VE K+AV R++ G PG T KK+FVGG+ E
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Query: 182 VPKE 185
+ ++
Sbjct: 188 LSRQ 191
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 117/184 (63%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+ KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A +
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H IDGR VE K+AV R++ G PG T KK+FVGG+ E
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Query: 182 VPKE 185
+ ++
Sbjct: 188 LSRQ 191
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 116/184 (63%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+ KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A +
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H IDGR VE K+AV R++ G PG T KK+FVGG+ E
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + ++ D + + RGFGF+T+D + VDK+ L+ +H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKA 187
Query: 182 VPKE 185
+ ++
Sbjct: 188 LSRQ 191
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 111/182 (60%), Gaps = 11/182 (6%)
Query: 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64
+ KLFIGG+ + T ++ L+ +F+ +G +++ V+MKD T R+RGFGFI ++ ++ +
Sbjct: 30 MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQ 89
Query: 65 MQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123
+ H IDGR VE K+AVPR D I A KK+FVG L E +
Sbjct: 90 KSRPHKIDGRVVEPKRAVPRQD----------IDSPNAGATVKKLFVGALKDDHDEQSIR 139
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
YF FG I D+ ++ D T + RGF F+ +D + VDKV+L+ H+LNGKMV+VK+A+P
Sbjct: 140 DYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALP 199
Query: 184 KE 185
K+
Sbjct: 200 KQ 201
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P +K+F+GGL T+ + K +F+++G I DVVVM D T+R RGFGFITY +D
Sbjct: 27 PEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMID 86
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSV 221
+ H+++G++VE KRAVP R + + N G + F+ ++ S+
Sbjct: 87 EAQKSRPHKIDGRVVEPKRAVP--------RQDIDSPNAGATVKKLFVGALKDDHDEQSI 138
Query: 222 GGY 224
Y
Sbjct: 139 RDY 141
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 17/186 (9%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ + GK+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A E
Sbjct: 26 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVE 85
Query: 62 RVV-MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ +++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E
Sbjct: 86 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 129
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V K+L +H++ E+K
Sbjct: 130 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 189
Query: 181 AVPKEL 186
A PKE+
Sbjct: 190 AQPKEV 195
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 18 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 77
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAV-------PKE-----LSPGPSRNQLGTH 198
+ +V+KVL H+L+GK+++ KRA PK+ LSP S Q+ +
Sbjct: 78 FKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 134
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 115/193 (59%), Gaps = 13/193 (6%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A V
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNTTPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H + G EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 182 VPKELSPGPSRNQ 194
+PK+ S +Q
Sbjct: 181 LPKQEMASASSSQ 193
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 62/89 (69%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ T H+++G++VE KRAV +E S P
Sbjct: 70 AAMNTTPHKVDGRVVEPKRAVSREDSQRP 98
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 145 bits (366), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 116/184 (63%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+ KLFIGG+S++T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A +
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H IDGR VE K+AV R++ G PG T KK+FVGG+ E
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + ++ D + + RGFGF+T+D + VDK++L+ H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKA 187
Query: 182 VPKE 185
+ ++
Sbjct: 188 LSRQ 191
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 115/184 (62%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+ KLFIGG+S+ T E+ LR+Y++ +G++ + V+M+D A+ R+RGFGF+ F+ A +
Sbjct: 7 QFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 66
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H IDGR VE K+AV R++ G PG T KK+FVGG+ E
Sbjct: 67 MAARPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHH 115
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF ++G I + ++ D + + RGFGF+T+D + VDK++L+ +H +NG EV++A
Sbjct: 116 LRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Query: 182 VPKE 185
+ ++
Sbjct: 176 LSRQ 179
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKP 93
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 145 bits (365), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 17/186 (9%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ + GK+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A +
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 RVV-MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ +++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E
Sbjct: 204 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 247
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V K+L +H++ E+K
Sbjct: 248 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 307
Query: 181 AVPKEL 186
A PKE+
Sbjct: 308 AQPKEV 313
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAV-------PKE-----LSPGPSRNQLGTH 198
+ +VDKVL H+L+GK+++ KRA PK+ LSP S Q+ +
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 116/188 (61%), Gaps = 21/188 (11%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA-----DPA 58
+ KLFIGG+S++T E+ LR+Y++ +G + + V+M+D A+ R+RGFGF+ F+ D A
Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAA 66
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTV 117
+A R H IDGR VE K+AV R++ PG T KK+FVGG+
Sbjct: 67 MATR----PHTIDGRVVEPKRAVAREES-----------AKPGAHVTVKKLFVGGIKEDT 111
Query: 118 TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVE 177
E ++YF+++G I + ++ D + + RGF F+T+D + VDK++L+ +H +NG E
Sbjct: 112 EEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAE 171
Query: 178 VKRAVPKE 185
V++A+ K+
Sbjct: 172 VRKALSKQ 179
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 55/85 (64%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 69 TRPHTIDGRVVEPKRAVAREESAKP 93
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 113/184 (61%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A V
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPKE 185
+ K+
Sbjct: 181 LCKQ 184
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 113/184 (61%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A V
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPKE 185
+ K+
Sbjct: 181 LSKQ 184
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 113/184 (61%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A V
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPKE 185
+ K+
Sbjct: 181 LSKQ 184
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 113/184 (61%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A V
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPKE 185
+ K+
Sbjct: 181 LSKQ 184
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 107/186 (57%), Gaps = 17/186 (9%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ + GK+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D +
Sbjct: 22 QQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVD 81
Query: 62 RVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ K H +DG+ ++ K+A ++ G P KK+FVGGL+ TE
Sbjct: 82 KVLETKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPETTEE 125
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF F+TY EE V K+L FH++ E+K
Sbjct: 126 QIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKV 185
Query: 181 AVPKEL 186
A PKE+
Sbjct: 186 AQPKEV 191
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 14 SKINASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 73
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAV-------PKE-----LSPGPSRNQLGTH 198
+ +VDKVL H+L+GK+++ KRA PK+ LSP + Q+ +
Sbjct: 74 FKDAVSVDKVLETKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQY 130
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 110/181 (60%), Gaps = 11/181 (6%)
Query: 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64
+ KLFIGG+ + T ++ L+ +F+ +GE+++ V+MKD T R+RGFGFI ++ + +
Sbjct: 16 VRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQ 75
Query: 65 -MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFK 123
+ H +DGR VE K+AVPR + I A KK+FVGG+ + E+D +
Sbjct: 76 NARPHKVDGRVVEPKRAVPR----------TEIGRPEAGATVKKLFVGGIKEEMEENDLR 125
Query: 124 KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183
YF Q+G + ++ D T++ RGF F+ +D + VDK+ L H++ GK ++VK+A+P
Sbjct: 126 DYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALP 185
Query: 184 K 184
K
Sbjct: 186 K 186
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 90 NRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGF 149
N + + HG P R K+F+GGL T+ K++F+Q+G I DVVVM D T+R RGF
Sbjct: 3 NMDRENDHGEPEHVR--KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGF 60
Query: 150 GFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFL 209
GFITY VD H+++G++VE KRAVP R ++G G + F+
Sbjct: 61 GFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVP--------RTEIGRPEAGATVKKLFV 112
Query: 210 NGYTQSYNPSSVGGY 224
G + + + Y
Sbjct: 113 GGIKEEMEENDLRDY 127
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 17/181 (9%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-M 65
K+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A ++V+ +
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 66 QKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E K+Y
Sbjct: 112 KEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKEY 155
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F FG I ++ + D T RGF FITY EE V K+L +H++ E+K A PKE
Sbjct: 156 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215
Query: 186 L 186
+
Sbjct: 216 V 216
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+ + +VD
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 162 KVLLKTFHELNGKMVEVKRAV-------PKE-----LSPGPSRNQLGTH 198
KVL H+L+GK+++ KRA PK+ LSP S Q+ +
Sbjct: 107 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 155
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 112/184 (60%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A +
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAA 71
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D +VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPKE 185
+ K+
Sbjct: 181 LSKQ 184
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 17/182 (9%)
Query: 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV- 64
GK+FIGG+SWDT++ L +Y FGEV++ I D TGR+RGFGF++F D A ++V+
Sbjct: 29 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 88
Query: 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKK 124
+++H +DG+ ++ K+A ++ G P KK+FVGGL+ +E K+
Sbjct: 89 LKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKE 132
Query: 125 YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
YF FG I ++ + D T RGF FITY EE V K+L +H++ E+K A PK
Sbjct: 133 YFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 192
Query: 185 EL 186
E+
Sbjct: 193 EV 194
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 17 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 76
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAV-------PKE-----LSPGPSRNQLGTH 198
+ +VDKVL H+L+GK+++ KRA PK+ LSP S Q+ +
Sbjct: 77 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 133
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 113/184 (61%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T ++ LR +F+ +G + + V+M+D T R+RGFGF+ +A V
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+Q+G I + +M D + + RGF F+T+D ++VDK++++ +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 182 VPKE 185
+ K+
Sbjct: 181 LSKQ 184
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+G +TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 114/184 (61%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ V
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E +
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS-----------VKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 182 VPKE 185
+ K+
Sbjct: 202 LSKQ 205
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 61/94 (64%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++G +TD VVM D T+R RGFGF+TY
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 86 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 114/184 (61%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ V
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E +
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS-----------VKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 182 VPKE 185
+ K+
Sbjct: 202 LSKQ 205
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 61/94 (64%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++G +TD VVM D T+R RGFGF+TY
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 86 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 114/184 (61%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T +D LR++F+ +G + + V+M+D T R+RGFGF+ ++ V
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E +
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS-----------VKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 182 VPKE 185
+ K+
Sbjct: 202 LSKQ 205
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 61/94 (64%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++G +TD VVM D T+R RGFGF+TY
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 86 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 112/184 (60%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T +D LR++F+ +G++ + V+M+D T R+RGFGF+ ++ V
Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 85 MSARPHKVDGRVVEPKRAVSREDS-----------ARPGAHLTVKKIFVGGIKEDTEEYH 133
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ Y + +G I + VM D + + RGF F+T+D + VDK++++ +H +NG EVK+A
Sbjct: 134 LRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 193
Query: 182 VPKE 185
+ K+
Sbjct: 194 LSKQ 197
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 61/94 (64%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+Q+G +TD VVM D T+R RGFGF+TY
Sbjct: 18 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC 77
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 78 VEEVDASMSARPHKVDGRVVEPKRAVSREDSARP 111
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 107/186 (57%), Gaps = 17/186 (9%)
Query: 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61
+ + GK+FIGG+SWDT++ L +Y FGEVL+ I D TGR+RGFGF++F D +
Sbjct: 22 QQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVD 81
Query: 62 RVV-MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTES 120
+V+ +H +DG+ ++ K+A ++ G P KK+FVGGL+ TE
Sbjct: 82 KVLETNEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPETTEE 125
Query: 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF F+TY EE V K+L FH++ E+K
Sbjct: 126 QIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKA 185
Query: 181 AVPKEL 186
A PKE+
Sbjct: 186 AQPKEV 191
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 94 SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153
S I+ S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 14 SKINASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVL 73
Query: 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAV-------PKE-----LSPGPSRNQLGTHNYG 201
+ +VDKVL H+L+GK+++ KRA PK+ LSP + Q+ + G
Sbjct: 74 FKDAVSVDKVLETNEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGG 133
Query: 202 LSRVSSF 208
+ +
Sbjct: 134 FGEIENI 140
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 142 bits (357), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 117/188 (62%), Gaps = 21/188 (11%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA-----DPA 58
+ KLFIGG+S++T E+ LR++++ +G++ + V+M+D A+ R+RGFGF+ F+ D A
Sbjct: 7 QFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAA 66
Query: 59 VAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTV 117
++ R H IDGR VE K+AV R++ PG T KK+FVGG+
Sbjct: 67 MSAR----PHTIDGRVVEPKRAVAREES-----------AKPGAHVTVKKLFVGGIKEDT 111
Query: 118 TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVE 177
E ++YF+++G I ++ D + + RGFGF+T++ + VDK++L+ +H +NG E
Sbjct: 112 EEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAE 171
Query: 178 VKRAVPKE 185
V++A+ K+
Sbjct: 172 VRKALSKQ 179
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGL+ TE + +++Q+G +TD VVM D ++R RGFGF+T+ VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 166 KTFHELNGKMVEVKRAVPKELSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKP 93
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 104/181 (57%), Gaps = 17/181 (9%)
Query: 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66
K+FIGG+SWDT++ L +Y FGEVL+ I D TGR+RGFGF++F D ++V+
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 67 K-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKY 125
K H +DG+ ++ K+A ++ G P KK+FVGGL+ TE K+Y
Sbjct: 95 KEHKLDGKLIDPKRA-------------KALQGKEPP---KKVFVGGLSPETTEEQIKQY 138
Query: 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185
F FG I ++ + D T RGF F+TY EE V K+L FH++ E+K A PKE
Sbjct: 139 FGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKE 198
Query: 186 L 186
+
Sbjct: 199 V 199
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 112/184 (60%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAER 62
+L KLFIGG+S++T +D LR++F+ +G++ + V+M+D T R+RGFGF+ ++ V
Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 85 MSARPHKVDGRVVEPKRAVSREDS-----------ARPGAHLTVKKIFVGGIKEDTEEYH 133
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
+ YF+ +G I + VM D + + RGF F+T+D + VDK++++ +H +N EVK+A
Sbjct: 134 LRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKA 193
Query: 182 VPKE 185
+ K+
Sbjct: 194 LSKQ 197
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 61/94 (64%)
Query: 97 HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+Q+G +TD VVM D T+R RGFGF+TY
Sbjct: 18 HEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC 77
Query: 157 EEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 78 VEEVDASMSARPHKVDGRVVEPKRAVSREDSARP 111
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 113/184 (61%), Gaps = 12/184 (6%)
Query: 1 MEME-LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAV 59
E+E L KLFIGG++ T E+ L+ ++ +G+V++ V+M+D AT R+RGFGFI + +
Sbjct: 26 CELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLM 85
Query: 60 AERVVMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVT 118
+R + H+IDG+TVEAK+A+PR ++ + N S KK+FVGGL
Sbjct: 86 VDRAQENRPHIIDGKTVEAKRALPRPERESRETNIS----------VKKLFVGGLKDNHD 135
Query: 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
E ++YF QFG + V ++ D T + RGF F+ +D +AVDK +LK H + V+V
Sbjct: 136 EECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDV 195
Query: 179 KRAV 182
K+++
Sbjct: 196 KKSI 199
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
+K+F+GGLA TE + K ++ Q+G + DVVVM D T+R RGFGFITY VD+
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYG 225
H ++GK VE KRA+P+ P R T+ +S F+ G +++ + Y
Sbjct: 92 NRPHIIDGKTVEAKRALPR-----PERESRETN---ISVKKLFVGGLKDNHDEECLREYF 143
Query: 226 LRI 228
L+
Sbjct: 144 LQF 146
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 123/203 (60%), Gaps = 16/203 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVF-ADPAVAER 62
+L KLFIGG+S++T ++ LR++F+ +G + + V+M+D + R+RGFGF+ + + V
Sbjct: 12 QLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAA 71
Query: 63 VVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPART-KKIFVGGLASTVTESD 121
+ + H +DGR VE K+AV R+D + PG T KKIFVGG+ E
Sbjct: 72 MTARPHKVDGRVVEPKRAVSREDSS-----------RPGAHLTVKKIFVGGIKEDTEEDH 120
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++YF+Q+G I + +M D + + RGF F+T++ ++VDK++++ +H +N +V++A
Sbjct: 121 LREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKA 180
Query: 182 VPKELSP---GPSRNQLGTHNYG 201
+ K+ G R + G+ NYG
Sbjct: 181 LSKQEMASVSGSQRERGGSGNYG 203
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 62/89 (69%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ +++F+Q+G +TD VVM D N++R RGFGF+TY S + VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVD 69
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 70 AAMTARPHKVDGRVVEPKRAVSREDSSRP 98
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 109/184 (59%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG++ T+E LR +F+AFG + + V++ + T R+R FGF+ +++ A+
Sbjct: 5 QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESD 121
+ H +DG TVE K+AV R+D PG A+ KK+FVGGL V E D
Sbjct: 65 MAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDVAEGD 113
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++F QFG + ++ D + + RGFGF+ + S +A DK + FH + G VEVK+A
Sbjct: 114 LIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 182 VPKE 185
VPKE
Sbjct: 174 VPKE 177
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 138 bits (348), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 108/183 (59%), Gaps = 11/183 (6%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG+ + T +D L+ +F+ +G +++ V+MKD T R+RGFGFI ++ + +
Sbjct: 22 QLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA 81
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDF 122
+ H IDGRTVE K+AVPR I A KK+FVGGL E
Sbjct: 82 QNARPHKIDGRTVEPKRAVPR----------QEIDSPNAGATVKKLFVGGLRDDHDEECL 131
Query: 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
++YF FG I V ++ D +T + RGF FI +D + VDK++L+ H + K ++VK+A+
Sbjct: 132 REYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI 191
Query: 183 PKE 185
K+
Sbjct: 192 AKQ 194
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL T+ K +F+++G I DVVVM D T+R RGFGFITY +D
Sbjct: 20 PEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMID 79
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSV 221
H+++G+ VE KRAVP R ++ + N G + F+ G ++ +
Sbjct: 80 NAQNARPHKIDGRTVEPKRAVP--------RQEIDSPNAGATVKKLFVGGLRDDHDEECL 131
Query: 222 GGY 224
Y
Sbjct: 132 REY 134
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 109/184 (59%), Gaps = 13/184 (7%)
Query: 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63
+L KLFIGG++ T+E LR +F+AFG + + V++ + T R+R FGF+ +++ A+
Sbjct: 5 QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
Query: 64 VMQK-HMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGP-ARTKKIFVGGLASTVTESD 121
+ H +DG TVE K+AV R+D PG A+ KK+FVGGL V E D
Sbjct: 65 MAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDVAEGD 113
Query: 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
++F QFG + ++ D + + RGFGF+ + + +A DK + FH + G VEVK+A
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 182 VPKE 185
VPKE
Sbjct: 174 VPKE 177
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 45/200 (22%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+F+GGL +ES + +F+ FG +TD VV+ + T+R R FGF+TY + E D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 167 TFHELNGKMVEVKRAVPKELSPGPSRNQLGTHNYGLSRVSSFLNGYTQSYNPSSVGGYGL 226
+ H ++G VE+KRAV +E S P G H ++V G GL
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARP-----GAH----AKVKKLFVG-------------GL 105
Query: 227 RIDGRYGPVTIGRSGFTTI-----------GPGYGMGLNFEPN-----------LSPSHG 264
+ D G + S F T+ G G G + N P G
Sbjct: 106 KGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQG 165
Query: 265 GGANLSPNLSYGRGLNPSFG 284
+ + + G
Sbjct: 166 HRVEVKKAVP-KEDIYSGGG 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,505,834
Number of Sequences: 539616
Number of extensions: 10685561
Number of successful extensions: 48697
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 930
Number of HSP's that attempted gapping in prelim test: 28404
Number of HSP's gapped (non-prelim): 7489
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)