Query 011912
Match_columns 475
No_of_seqs 393 out of 2067
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 4.8E-35 1E-39 298.9 27.2 170 3-188 105-279 (346)
2 KOG4205 RNA-binding protein mu 100.0 1.4E-32 3E-37 274.0 21.6 239 3-251 4-248 (311)
3 TIGR01645 half-pint poly-U bin 100.0 1.5E-30 3.3E-35 279.4 21.8 179 4-187 106-287 (612)
4 KOG0117 Heterogeneous nuclear 100.0 4.1E-29 8.9E-34 251.0 26.6 178 5-190 83-337 (506)
5 TIGR01648 hnRNP-R-Q heterogene 100.0 6E-29 1.3E-33 266.7 27.7 174 5-187 58-310 (578)
6 TIGR01622 SF-CC1 splicing fact 100.0 2E-29 4.3E-34 267.6 23.5 178 2-183 86-265 (457)
7 KOG0144 RNA-binding protein CU 100.0 1.1E-30 2.4E-35 261.1 13.0 174 2-191 31-213 (510)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.8E-29 3.9E-34 258.7 22.2 166 4-185 2-172 (352)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.5E-29 9.7E-34 255.8 24.3 183 4-186 88-351 (352)
10 KOG0148 Apoptosis-promoting RN 100.0 2.8E-28 6E-33 231.7 18.2 178 5-188 62-242 (321)
11 TIGR01628 PABP-1234 polyadenyl 100.0 1.6E-27 3.4E-32 259.6 19.5 182 4-187 177-367 (562)
12 TIGR01628 PABP-1234 polyadenyl 100.0 3.2E-27 7E-32 257.1 20.9 166 7-187 2-170 (562)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.5E-26 9.7E-31 244.9 22.4 178 2-185 172-376 (509)
14 KOG0145 RNA-binding protein EL 99.9 8.7E-26 1.9E-30 213.4 14.4 170 2-187 38-212 (360)
15 KOG0127 Nucleolar protein fibr 99.9 2.6E-25 5.6E-30 228.0 18.1 181 5-186 117-380 (678)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.7E-25 1.7E-29 234.2 22.0 174 4-184 274-480 (481)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.6E-25 1.4E-29 234.7 21.5 167 5-185 2-175 (481)
18 KOG0131 Splicing factor 3b, su 99.9 1.9E-25 4.1E-30 201.7 12.7 169 4-187 8-180 (203)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.6E-24 5.7E-29 231.3 21.9 180 4-183 294-501 (509)
20 KOG0127 Nucleolar protein fibr 99.9 1.6E-24 3.4E-29 222.3 16.8 186 1-187 1-199 (678)
21 KOG0109 RNA-binding protein LA 99.9 1.5E-24 3.3E-29 208.1 12.0 148 6-187 3-153 (346)
22 KOG4211 Splicing factor hnRNP- 99.9 9.4E-21 2E-25 193.5 31.4 174 5-187 10-185 (510)
23 TIGR01622 SF-CC1 splicing fact 99.9 4.6E-22 9.9E-27 211.2 21.5 175 5-183 186-447 (457)
24 KOG0124 Polypyrimidine tract-b 99.9 2.5E-23 5.4E-28 204.5 8.9 177 5-186 113-292 (544)
25 KOG0145 RNA-binding protein EL 99.9 4.7E-21 1E-25 181.5 15.3 182 4-185 126-359 (360)
26 KOG0147 Transcriptional coacti 99.8 9.2E-22 2E-26 203.1 7.9 184 2-187 176-361 (549)
27 KOG0123 Polyadenylate-binding 99.8 1.5E-20 3.3E-25 193.5 16.5 155 6-190 2-159 (369)
28 KOG0146 RNA-binding protein ET 99.8 4.5E-21 9.8E-26 182.2 11.0 184 4-188 18-369 (371)
29 KOG0110 RNA-binding protein (R 99.8 5.9E-21 1.3E-25 201.8 12.7 174 4-184 514-693 (725)
30 KOG0148 Apoptosis-promoting RN 99.8 2.8E-20 6.1E-25 177.3 10.7 140 2-185 3-143 (321)
31 KOG0105 Alternative splicing f 99.8 8.6E-19 1.9E-23 158.9 16.9 159 3-171 4-175 (241)
32 KOG0123 Polyadenylate-binding 99.8 2.9E-19 6.4E-24 184.0 15.0 170 3-184 74-246 (369)
33 KOG0144 RNA-binding protein CU 99.8 1.3E-19 2.9E-24 182.0 11.9 182 4-186 123-506 (510)
34 PLN03134 glycine-rich RNA-bind 99.8 3.6E-18 7.8E-23 154.1 16.4 85 103-187 32-117 (144)
35 TIGR01645 half-pint poly-U bin 99.8 4.6E-17 1E-21 175.7 22.4 78 5-82 204-283 (612)
36 KOG4212 RNA-binding protein hn 99.7 3.3E-17 7.1E-22 164.8 17.0 179 3-183 42-293 (608)
37 KOG0106 Alternative splicing f 99.7 1.5E-17 3.3E-22 157.2 8.1 160 6-181 2-168 (216)
38 PLN03134 glycine-rich RNA-bind 99.7 7.7E-17 1.7E-21 145.5 11.3 81 4-84 33-115 (144)
39 KOG4206 Spliceosomal protein s 99.7 6.3E-16 1.4E-20 145.1 16.6 169 6-182 10-220 (221)
40 KOG4211 Splicing factor hnRNP- 99.6 1.3E-14 2.9E-19 148.7 19.8 174 5-181 103-355 (510)
41 KOG0147 Transcriptional coacti 99.6 1.5E-15 3.2E-20 157.5 13.0 173 5-182 278-526 (549)
42 COG0724 RNA-binding proteins ( 99.6 4.8E-15 1E-19 142.8 14.0 157 5-161 115-281 (306)
43 KOG0149 Predicted RNA-binding 99.6 1.2E-15 2.6E-20 143.7 7.7 79 4-82 11-90 (247)
44 KOG0149 Predicted RNA-binding 99.6 2.4E-15 5.1E-20 141.7 9.1 81 103-183 10-90 (247)
45 TIGR01659 sex-lethal sex-letha 99.6 4.5E-15 9.7E-20 152.2 11.2 85 101-185 103-188 (346)
46 KOG0110 RNA-binding protein (R 99.6 8.3E-15 1.8E-19 155.6 13.4 175 2-182 382-596 (725)
47 KOG1365 RNA-binding protein Fu 99.6 1.8E-15 4E-20 150.3 7.1 180 5-186 161-364 (508)
48 KOG0113 U1 small nuclear ribon 99.6 1.9E-15 4.2E-20 146.3 5.4 91 103-193 99-190 (335)
49 KOG0129 Predicted RNA-binding 99.6 4.9E-14 1.1E-18 145.5 15.3 179 3-182 257-452 (520)
50 TIGR01648 hnRNP-R-Q heterogene 99.5 1.9E-14 4.1E-19 155.3 11.6 119 5-131 233-367 (578)
51 PF00076 RRM_1: RNA recognitio 99.5 4.4E-14 9.5E-19 110.0 9.4 69 108-177 1-70 (70)
52 KOG0125 Ataxin 2-binding prote 99.5 2.7E-14 5.8E-19 139.9 9.9 85 101-187 92-177 (376)
53 PF00076 RRM_1: RNA recognitio 99.5 4.8E-14 1E-18 109.8 9.3 68 8-76 1-70 (70)
54 KOG1548 Transcription elongati 99.5 4.3E-13 9.2E-18 132.4 16.6 174 5-183 134-351 (382)
55 KOG0122 Translation initiation 99.5 7E-14 1.5E-18 132.3 9.8 83 102-184 186-269 (270)
56 KOG0122 Translation initiation 99.5 6.2E-14 1.4E-18 132.6 9.3 80 4-83 188-269 (270)
57 PF14259 RRM_6: RNA recognitio 99.5 1.6E-13 3.4E-18 107.7 9.1 69 108-177 1-70 (70)
58 KOG0124 Polypyrimidine tract-b 99.5 9.7E-13 2.1E-17 130.3 15.1 178 4-181 209-532 (544)
59 PLN03120 nucleic acid binding 99.5 2.7E-13 5.9E-18 131.6 11.0 78 3-83 2-80 (260)
60 PF14259 RRM_6: RNA recognitio 99.5 2.6E-13 5.7E-18 106.5 8.9 68 8-76 1-70 (70)
61 KOG1190 Polypyrimidine tract-b 99.5 2.3E-12 5E-17 129.5 16.7 170 5-183 297-490 (492)
62 KOG1457 RNA binding protein (c 99.4 1.5E-12 3.2E-17 121.7 14.2 159 5-167 34-268 (284)
63 KOG4212 RNA-binding protein hn 99.4 2.1E-12 4.6E-17 130.5 15.6 73 104-181 535-608 (608)
64 PLN03120 nucleic acid binding 99.4 6.5E-13 1.4E-17 129.0 11.4 78 105-185 4-81 (260)
65 KOG0120 Splicing factor U2AF, 99.4 9.7E-13 2.1E-17 138.1 12.8 179 4-182 288-490 (500)
66 KOG0121 Nuclear cap-binding pr 99.4 3.9E-13 8.4E-18 115.7 7.4 81 103-183 34-115 (153)
67 PLN03213 repressor of silencin 99.4 2.8E-13 6.1E-18 138.4 7.2 77 4-84 9-89 (759)
68 KOG4207 Predicted splicing fac 99.4 3.2E-13 6.9E-18 124.9 6.9 84 101-184 9-93 (256)
69 PLN03121 nucleic acid binding 99.4 2.6E-12 5.5E-17 123.1 12.6 80 1-83 1-81 (243)
70 KOG0107 Alternative splicing f 99.4 7.7E-13 1.7E-17 119.6 8.0 75 5-84 10-86 (195)
71 KOG0121 Nuclear cap-binding pr 99.4 7.5E-13 1.6E-17 113.9 7.2 80 3-82 34-115 (153)
72 smart00362 RRM_2 RNA recogniti 99.4 3.5E-12 7.5E-17 98.2 9.4 71 107-179 1-72 (72)
73 COG0724 RNA-binding proteins ( 99.4 3E-12 6.6E-17 123.2 10.6 79 105-183 115-194 (306)
74 smart00360 RRM RNA recognition 99.4 4.2E-12 9.1E-17 97.2 9.0 70 110-179 1-71 (71)
75 KOG0113 U1 small nuclear ribon 99.4 2.6E-12 5.6E-17 124.8 9.4 80 3-82 99-180 (335)
76 KOG0117 Heterogeneous nuclear 99.4 6.2E-12 1.4E-16 127.7 12.5 119 54-181 41-161 (506)
77 KOG0111 Cyclophilin-type pepti 99.3 9.2E-13 2E-17 122.8 5.4 89 103-191 8-97 (298)
78 smart00362 RRM_2 RNA recogniti 99.3 6.2E-12 1.4E-16 96.7 9.3 70 7-78 1-72 (72)
79 KOG0107 Alternative splicing f 99.3 2.9E-12 6.2E-17 116.0 7.7 77 104-185 9-86 (195)
80 KOG1365 RNA-binding protein Fu 99.3 3.9E-12 8.5E-17 126.8 9.1 179 3-182 58-241 (508)
81 PLN03213 repressor of silencin 99.3 4.7E-12 1E-16 129.6 9.8 77 103-183 8-87 (759)
82 smart00360 RRM RNA recognition 99.3 1E-11 2.2E-16 95.1 8.5 69 10-78 1-71 (71)
83 PLN03121 nucleic acid binding 99.3 1.4E-11 3.1E-16 118.0 11.2 79 104-185 4-82 (243)
84 KOG0108 mRNA cleavage and poly 99.3 2.5E-12 5.5E-17 134.2 6.6 80 6-85 19-100 (435)
85 cd00590 RRM RRM (RNA recogniti 99.3 2.3E-11 5E-16 94.0 10.0 73 107-180 1-74 (74)
86 KOG0125 Ataxin 2-binding prote 99.3 5.6E-12 1.2E-16 123.8 7.8 80 4-85 95-176 (376)
87 KOG1190 Polypyrimidine tract-b 99.3 7.1E-12 1.5E-16 126.0 8.6 170 2-181 25-225 (492)
88 KOG0120 Splicing factor U2AF, 99.3 8E-12 1.7E-16 131.3 9.1 180 2-187 172-372 (500)
89 KOG0105 Alternative splicing f 99.3 1.9E-11 4E-16 111.5 9.3 78 104-184 5-83 (241)
90 KOG4207 Predicted splicing fac 99.3 6.3E-12 1.4E-16 116.4 6.4 78 4-81 12-91 (256)
91 KOG0131 Splicing factor 3b, su 99.3 7.7E-12 1.7E-16 113.9 6.3 80 103-182 7-87 (203)
92 KOG0130 RNA-binding protein RB 99.2 2.1E-11 4.5E-16 105.9 7.8 84 104-187 71-155 (170)
93 cd00590 RRM RRM (RNA recogniti 99.2 6.6E-11 1.4E-15 91.5 9.9 72 7-79 1-74 (74)
94 KOG0114 Predicted RNA-binding 99.2 4.6E-11 9.9E-16 99.4 9.2 81 101-184 14-95 (124)
95 KOG0126 Predicted RNA-binding 99.2 1.8E-12 4E-17 117.7 0.6 79 3-81 33-113 (219)
96 KOG0111 Cyclophilin-type pepti 99.2 1.1E-11 2.5E-16 115.6 5.8 86 1-86 6-93 (298)
97 KOG4205 RNA-binding protein mu 99.2 1.1E-11 2.3E-16 124.4 5.2 89 104-192 5-93 (311)
98 KOG0126 Predicted RNA-binding 99.2 2.3E-12 5.1E-17 117.1 -0.2 78 104-181 34-112 (219)
99 KOG0114 Predicted RNA-binding 99.2 8.4E-11 1.8E-15 97.8 8.8 78 5-85 18-97 (124)
100 KOG0116 RasGAP SH3 binding pro 99.2 1.8E-10 3.8E-15 119.8 12.9 82 106-187 289-370 (419)
101 KOG0130 RNA-binding protein RB 99.2 4.3E-11 9.4E-16 104.0 6.1 81 5-85 72-154 (170)
102 KOG0108 mRNA cleavage and poly 99.2 5.7E-11 1.2E-15 124.1 8.1 81 106-186 19-100 (435)
103 KOG1456 Heterogeneous nuclear 99.2 2.7E-09 5.8E-14 106.5 19.1 162 5-186 31-201 (494)
104 KOG0109 RNA-binding protein LA 99.1 5.5E-11 1.2E-15 115.2 6.5 71 106-184 3-74 (346)
105 KOG1456 Heterogeneous nuclear 99.1 1.7E-09 3.6E-14 108.0 16.5 163 4-173 286-474 (494)
106 KOG4210 Nuclear localization s 99.1 1E-10 2.2E-15 116.8 6.8 178 4-187 87-267 (285)
107 KOG0128 RNA-binding protein SA 99.1 4.2E-12 9E-17 137.6 -3.4 152 3-187 665-818 (881)
108 smart00361 RRM_1 RNA recogniti 99.1 3.8E-10 8.2E-15 89.1 8.3 60 119-178 2-69 (70)
109 KOG4454 RNA binding protein (R 99.1 3E-11 6.4E-16 112.9 0.2 133 3-167 7-145 (267)
110 PF13893 RRM_5: RNA recognitio 99.0 9.8E-10 2.1E-14 82.6 7.8 55 122-181 1-56 (56)
111 smart00361 RRM_1 RNA recogniti 99.0 1.2E-09 2.6E-14 86.3 8.0 60 18-77 1-69 (70)
112 KOG0415 Predicted peptidyl pro 99.0 4.7E-10 1E-14 111.2 6.6 81 2-82 236-318 (479)
113 KOG0132 RNA polymerase II C-te 99.0 6.9E-10 1.5E-14 119.4 8.0 108 4-128 420-529 (894)
114 PF13893 RRM_5: RNA recognitio 98.9 4.7E-09 1E-13 78.9 7.8 54 22-80 1-56 (56)
115 KOG0415 Predicted peptidyl pro 98.9 1.8E-09 4E-14 107.1 6.7 83 101-183 235-318 (479)
116 KOG0132 RNA polymerase II C-te 98.9 6E-09 1.3E-13 112.3 8.9 81 102-188 418-499 (894)
117 KOG0226 RNA-binding proteins [ 98.8 1.7E-09 3.8E-14 103.2 3.6 168 7-185 98-271 (290)
118 KOG0146 RNA-binding protein ET 98.8 3.1E-09 6.7E-14 102.0 5.1 83 3-85 283-367 (371)
119 KOG0153 Predicted RNA-binding 98.8 1.9E-08 4.1E-13 100.0 9.8 81 99-185 222-304 (377)
120 KOG4307 RNA binding protein RB 98.8 9.1E-09 2E-13 109.5 7.9 176 3-180 309-510 (944)
121 KOG0153 Predicted RNA-binding 98.8 3.4E-08 7.4E-13 98.2 9.7 74 3-82 226-302 (377)
122 KOG0112 Large RNA-binding prot 98.7 5.5E-09 1.2E-13 114.2 4.2 160 3-187 370-534 (975)
123 KOG4208 Nucleolar RNA-binding 98.7 7.1E-08 1.5E-12 89.9 10.4 80 4-83 48-130 (214)
124 KOG4208 Nucleolar RNA-binding 98.7 6.6E-08 1.4E-12 90.1 8.0 83 102-184 46-130 (214)
125 KOG0533 RRM motif-containing p 98.6 8.7E-08 1.9E-12 93.0 8.8 84 103-187 81-165 (243)
126 KOG4206 Spliceosomal protein s 98.6 8.2E-08 1.8E-12 90.8 8.0 80 104-186 8-92 (221)
127 KOG4661 Hsp27-ERE-TATA-binding 98.6 6.6E-08 1.4E-12 101.0 7.6 79 105-183 405-484 (940)
128 KOG0116 RasGAP SH3 binding pro 98.6 1.3E-07 2.7E-12 98.7 7.6 79 4-82 287-366 (419)
129 KOG4209 Splicing factor RNPS1, 98.5 2.4E-07 5.3E-12 89.9 8.0 83 102-184 98-180 (231)
130 KOG0533 RRM motif-containing p 98.5 3.8E-07 8.3E-12 88.6 8.7 81 2-83 80-162 (243)
131 KOG4661 Hsp27-ERE-TATA-binding 98.5 3.1E-07 6.8E-12 96.1 7.9 78 5-82 405-484 (940)
132 KOG1548 Transcription elongati 98.5 6.6E-07 1.4E-11 89.1 9.1 82 101-183 130-220 (382)
133 KOG4454 RNA binding protein (R 98.4 1.2E-07 2.6E-12 89.0 3.1 78 102-181 6-84 (267)
134 KOG0106 Alternative splicing f 98.4 2.8E-07 6.1E-12 87.7 5.3 73 106-186 2-75 (216)
135 KOG4307 RNA binding protein RB 98.4 7.1E-06 1.5E-10 88.0 15.2 75 5-80 434-511 (944)
136 KOG2193 IGF-II mRNA-binding pr 98.4 8.6E-08 1.9E-12 97.2 0.8 149 6-183 2-156 (584)
137 KOG4660 Protein Mei2, essentia 98.4 3.9E-07 8.4E-12 95.7 5.6 170 2-183 72-249 (549)
138 PF04059 RRM_2: RNA recognitio 98.4 2.3E-06 5E-11 71.8 9.2 77 6-82 2-86 (97)
139 KOG4676 Splicing factor, argin 98.4 3E-07 6.6E-12 92.6 4.4 165 4-172 6-214 (479)
140 KOG1995 Conserved Zn-finger pr 98.4 1.5E-06 3.3E-11 87.2 9.0 85 102-186 63-156 (351)
141 KOG4209 Splicing factor RNPS1, 98.4 5.1E-07 1.1E-11 87.6 5.5 82 2-83 98-180 (231)
142 PF04059 RRM_2: RNA recognitio 98.3 4.9E-06 1.1E-10 69.9 9.0 78 106-183 2-86 (97)
143 KOG0128 RNA-binding protein SA 98.3 6.4E-08 1.4E-12 105.6 -3.5 163 5-173 571-735 (881)
144 KOG0226 RNA-binding proteins [ 98.2 1E-06 2.2E-11 84.6 4.3 79 3-81 188-268 (290)
145 KOG1457 RNA binding protein (c 98.2 1E-05 2.3E-10 76.4 9.7 87 102-188 31-122 (284)
146 KOG4660 Protein Mei2, essentia 98.1 1.6E-06 3.4E-11 91.2 3.9 71 102-177 72-143 (549)
147 KOG0151 Predicted splicing reg 98.0 1E-05 2.2E-10 87.1 6.6 80 3-82 172-256 (877)
148 PF08777 RRM_3: RNA binding mo 97.9 1.7E-05 3.6E-10 67.9 5.2 69 106-180 2-76 (105)
149 KOG1995 Conserved Zn-finger pr 97.8 1.7E-05 3.6E-10 79.9 4.4 82 4-85 65-156 (351)
150 PF11608 Limkain-b1: Limkain b 97.7 8.9E-05 1.9E-09 60.0 6.5 67 106-182 3-75 (90)
151 KOG4849 mRNA cleavage factor I 97.7 5.8E-05 1.3E-09 75.4 6.3 76 104-179 79-157 (498)
152 KOG0151 Predicted splicing reg 97.7 5.6E-05 1.2E-09 81.5 6.4 83 102-184 171-257 (877)
153 KOG1855 Predicted RNA-binding 97.6 4.2E-05 9.1E-10 78.4 4.3 67 103-169 229-308 (484)
154 PF08777 RRM_3: RNA binding mo 97.6 0.00017 3.6E-09 61.7 6.6 53 6-64 2-54 (105)
155 PF11608 Limkain-b1: Limkain b 97.5 0.00045 9.7E-09 56.0 7.6 67 6-82 3-76 (90)
156 KOG4210 Nuclear localization s 97.4 9.9E-05 2.1E-09 74.1 2.9 80 6-85 185-266 (285)
157 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00036 7.8E-09 52.1 5.0 52 106-164 2-53 (53)
158 KOG0129 Predicted RNA-binding 97.2 0.00098 2.1E-08 70.1 7.4 60 5-64 370-430 (520)
159 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0011 2.5E-08 49.4 5.5 52 6-64 2-53 (53)
160 KOG4849 mRNA cleavage factor I 97.0 0.00042 9.1E-09 69.4 3.2 73 6-78 81-157 (498)
161 KOG0115 RNA-binding protein p5 97.0 0.0013 2.9E-08 63.6 5.7 101 58-182 7-112 (275)
162 COG5175 MOT2 Transcriptional r 97.0 0.0016 3.5E-08 65.1 6.4 81 103-183 112-202 (480)
163 KOG1855 Predicted RNA-binding 96.9 0.0012 2.5E-08 68.1 5.2 63 2-64 228-303 (484)
164 KOG3152 TBP-binding protein, a 96.8 0.00074 1.6E-08 65.3 2.7 71 4-74 73-157 (278)
165 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0053 1.2E-07 51.9 7.1 78 105-183 6-91 (100)
166 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0053 1.2E-07 52.0 6.9 78 3-81 4-90 (100)
167 PF10309 DUF2414: Protein of u 96.6 0.0091 2E-07 45.9 7.1 57 103-167 3-62 (62)
168 COG5175 MOT2 Transcriptional r 96.6 0.0045 9.7E-08 62.0 6.7 79 5-83 114-203 (480)
169 KOG2591 c-Mpl binding protein, 96.6 0.0041 8.9E-08 65.9 6.2 72 103-181 173-249 (684)
170 KOG2314 Translation initiation 96.5 0.002 4.4E-08 68.3 3.7 68 4-72 57-132 (698)
171 PF10567 Nab6_mRNP_bdg: RNA-re 96.4 0.067 1.5E-06 53.1 13.5 164 4-168 14-212 (309)
172 KOG4676 Splicing factor, argin 96.3 0.0055 1.2E-07 62.5 4.9 77 106-182 8-87 (479)
173 PF08952 DUF1866: Domain of un 96.2 0.016 3.6E-07 52.0 7.3 56 121-184 52-107 (146)
174 PF08675 RNA_bind: RNA binding 96.2 0.013 2.8E-07 47.6 6.0 59 101-168 5-63 (87)
175 KOG2314 Translation initiation 96.2 0.013 2.9E-07 62.4 7.5 76 104-180 57-140 (698)
176 KOG1996 mRNA splicing factor [ 96.1 0.015 3.2E-07 57.5 7.0 63 119-181 300-364 (378)
177 KOG2416 Acinus (induces apopto 96.1 0.0084 1.8E-07 64.1 5.4 77 101-183 440-521 (718)
178 KOG0115 RNA-binding protein p5 96.1 0.0082 1.8E-07 58.3 4.8 58 6-64 32-89 (275)
179 KOG3152 TBP-binding protein, a 96.0 0.0053 1.1E-07 59.5 3.4 72 104-175 73-157 (278)
180 PF07292 NID: Nmi/IFP 35 domai 96.0 0.0055 1.2E-07 50.5 2.8 71 50-127 1-74 (88)
181 KOG2193 IGF-II mRNA-binding pr 95.6 0.0079 1.7E-07 61.9 2.8 77 106-188 2-80 (584)
182 KOG2135 Proteins containing th 95.6 0.012 2.5E-07 61.6 4.0 73 106-184 373-446 (526)
183 KOG1996 mRNA splicing factor [ 95.5 0.034 7.3E-07 55.0 6.6 62 19-80 300-364 (378)
184 PF08675 RNA_bind: RNA binding 95.4 0.053 1.2E-06 44.1 6.2 51 5-64 9-59 (87)
185 KOG2202 U2 snRNP splicing fact 95.4 0.011 2.4E-07 57.5 2.7 63 20-83 83-148 (260)
186 KOG2202 U2 snRNP splicing fact 95.4 0.0083 1.8E-07 58.3 1.9 62 120-182 83-146 (260)
187 PF10309 DUF2414: Protein of u 95.3 0.088 1.9E-06 40.5 7.1 53 4-65 4-60 (62)
188 KOG2591 c-Mpl binding protein, 95.0 0.038 8.2E-07 58.9 5.5 68 4-78 174-247 (684)
189 KOG2135 Proteins containing th 94.9 0.017 3.6E-07 60.5 2.7 78 1-84 368-447 (526)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.035 7.7E-07 51.8 4.3 68 3-70 5-80 (176)
191 PF08952 DUF1866: Domain of un 94.5 0.12 2.6E-06 46.5 6.7 54 21-82 52-106 (146)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 93.7 0.047 1E-06 51.0 2.6 80 104-183 6-97 (176)
193 PF15023 DUF4523: Protein of u 93.6 0.36 7.8E-06 43.3 7.8 75 101-182 82-160 (166)
194 KOG4285 Mitotic phosphoprotein 93.1 0.48 1E-05 47.3 8.6 76 106-188 198-274 (350)
195 KOG0112 Large RNA-binding prot 92.8 0.03 6.5E-07 62.7 -0.2 64 104-168 371-434 (975)
196 KOG2416 Acinus (induces apopto 92.6 0.084 1.8E-06 56.8 2.9 70 5-80 444-519 (718)
197 KOG2253 U1 snRNP complex, subu 92.6 0.071 1.5E-06 58.1 2.3 116 5-129 40-159 (668)
198 PF15023 DUF4523: Protein of u 92.5 0.61 1.3E-05 41.8 7.7 72 2-80 83-159 (166)
199 KOG2318 Uncharacterized conser 91.6 0.89 1.9E-05 49.1 9.0 126 2-180 171-304 (650)
200 PF07576 BRAP2: BRCA1-associat 91.0 1.9 4E-05 37.2 8.9 65 105-171 13-79 (110)
201 KOG2068 MOT2 transcription fac 90.4 0.1 2.3E-06 52.7 0.8 82 103-184 75-163 (327)
202 PF04847 Calcipressin: Calcipr 90.4 0.82 1.8E-05 43.1 6.7 63 117-185 7-72 (184)
203 KOG2068 MOT2 transcription fac 90.3 0.22 4.7E-06 50.4 2.9 79 6-84 78-164 (327)
204 PF03880 DbpA: DbpA RNA bindin 89.9 1.5 3.2E-05 34.8 6.9 64 7-80 2-74 (74)
205 PF14111 DUF4283: Domain of un 89.1 0.37 7.9E-06 43.2 3.3 118 8-140 18-140 (153)
206 KOG4285 Mitotic phosphoprotein 88.9 1.7 3.8E-05 43.5 7.9 73 6-85 198-272 (350)
207 PF07530 PRE_C2HC: Associated 88.5 0.83 1.8E-05 35.9 4.4 63 20-83 2-65 (68)
208 PF07576 BRAP2: BRCA1-associat 88.3 3.3 7.1E-05 35.7 8.4 64 5-70 13-79 (110)
209 KOG0804 Cytoplasmic Zn-finger 88.0 1.6 3.5E-05 45.9 7.4 65 5-71 74-141 (493)
210 KOG4574 RNA-binding protein (c 87.8 0.44 9.6E-06 53.4 3.4 77 107-189 300-379 (1007)
211 PF03880 DbpA: DbpA RNA bindin 87.6 1.8 4E-05 34.2 6.0 58 115-181 11-74 (74)
212 PF11767 SET_assoc: Histone ly 86.8 2.5 5.4E-05 33.0 6.2 52 16-76 11-64 (66)
213 PF04847 Calcipressin: Calcipr 86.5 1.7 3.6E-05 41.0 6.0 61 17-83 7-71 (184)
214 smart00596 PRE_C2HC PRE_C2HC d 85.9 1.2 2.5E-05 35.1 3.8 62 20-82 2-64 (69)
215 KOG2253 U1 snRNP complex, subu 85.6 0.55 1.2E-05 51.4 2.6 70 103-181 38-108 (668)
216 PRK11634 ATP-dependent RNA hel 85.3 12 0.00025 42.1 12.9 71 106-185 487-564 (629)
217 KOG4410 5-formyltetrahydrofola 84.5 6.3 0.00014 39.3 9.0 56 105-166 330-393 (396)
218 TIGR02542 B_forsyth_147 Bacter 82.5 3.1 6.7E-05 35.9 5.3 115 13-157 11-129 (145)
219 KOG0804 Cytoplasmic Zn-finger 82.0 4.3 9.4E-05 42.8 7.2 66 105-172 74-141 (493)
220 PF07530 PRE_C2HC: Associated 81.2 2.6 5.7E-05 33.0 4.2 63 120-184 2-65 (68)
221 COG5594 Uncharacterized integr 80.3 0.3 6.5E-06 54.8 -2.0 29 3-31 206-235 (827)
222 KOG4213 RNA-binding protein La 79.4 1.2 2.6E-05 41.4 1.9 61 104-169 110-172 (205)
223 smart00596 PRE_C2HC PRE_C2HC d 78.3 3.8 8.2E-05 32.2 4.1 61 120-183 2-64 (69)
224 PF02714 DUF221: Domain of unk 73.0 5.1 0.00011 40.6 4.8 57 50-128 1-57 (325)
225 KOG4483 Uncharacterized conser 72.5 10 0.00022 39.5 6.6 58 104-168 390-448 (528)
226 PF11767 SET_assoc: Histone ly 71.5 22 0.00049 27.7 6.9 53 116-177 11-64 (66)
227 PF03468 XS: XS domain; Inter 68.6 6.8 0.00015 34.1 3.9 47 117-166 29-76 (116)
228 KOG4483 Uncharacterized conser 67.4 10 0.00022 39.5 5.4 58 5-69 391-449 (528)
229 KOG2891 Surface glycoprotein [ 65.4 17 0.00037 36.1 6.3 38 102-139 146-195 (445)
230 KOG4574 RNA-binding protein (c 64.8 4.7 0.0001 45.6 2.6 73 6-84 299-375 (1007)
231 PF10567 Nab6_mRNP_bdg: RNA-re 63.7 18 0.00039 36.4 6.1 80 103-182 13-106 (309)
232 cd06405 PB1_Mekk2_3 The PB1 do 58.0 74 0.0016 25.5 7.4 60 112-179 15-75 (79)
233 PF03468 XS: XS domain; Inter 58.0 14 0.0003 32.1 3.8 55 7-64 10-74 (116)
234 KOG4213 RNA-binding protein La 57.2 12 0.00026 35.0 3.4 55 5-64 111-167 (205)
235 KOG4019 Calcineurin-mediated s 56.9 9.6 0.00021 35.6 2.8 73 107-185 12-91 (193)
236 TIGR03636 L23_arch archaeal ri 54.7 29 0.00063 27.9 4.9 55 7-64 15-71 (77)
237 PF08002 DUF1697: Protein of u 54.3 48 0.001 29.5 6.9 123 6-138 4-132 (137)
238 PF14026 DUF4242: Protein of u 53.5 91 0.002 24.9 7.6 59 108-168 3-68 (77)
239 PF02714 DUF221: Domain of unk 52.2 14 0.00031 37.3 3.6 35 150-185 1-35 (325)
240 PRK14548 50S ribosomal protein 50.2 38 0.00082 27.7 5.0 54 8-64 23-78 (84)
241 KOG4410 5-formyltetrahydrofola 48.2 21 0.00045 35.8 3.7 48 6-58 331-378 (396)
242 TIGR02515 IV_pilus_PilQ type I 46.7 26 0.00057 37.1 4.6 63 16-81 7-75 (418)
243 COG5193 LHP1 La protein, small 45.2 11 0.00024 39.4 1.3 62 104-165 173-244 (438)
244 PF07292 NID: Nmi/IFP 35 domai 44.8 34 0.00073 28.3 3.9 31 150-180 1-33 (88)
245 PTZ00191 60S ribosomal protein 43.4 64 0.0014 29.2 5.8 54 5-63 83-138 (145)
246 TIGR03636 L23_arch archaeal ri 42.6 77 0.0017 25.5 5.6 57 108-167 16-74 (77)
247 PRK14548 50S ribosomal protein 42.0 74 0.0016 26.0 5.5 56 109-167 24-81 (84)
248 PRK06369 nac nascent polypepti 41.3 1.8E+02 0.0038 25.4 7.9 31 115-169 73-103 (115)
249 COG5193 LHP1 La protein, small 41.0 9.6 0.00021 39.8 0.2 60 5-64 174-243 (438)
250 PF14893 PNMA: PNMA 41.0 22 0.00047 36.7 2.8 53 103-157 16-72 (331)
251 KOG4008 rRNA processing protei 40.2 23 0.0005 34.5 2.6 33 2-34 37-69 (261)
252 PRK11901 hypothetical protein; 40.0 43 0.00092 34.3 4.6 55 116-172 253-309 (327)
253 KOG4019 Calcineurin-mediated s 39.6 40 0.00087 31.6 4.0 72 6-83 11-90 (193)
254 KOG2295 C2H2 Zn-finger protein 39.0 6.9 0.00015 42.4 -1.2 66 103-168 229-294 (648)
255 COG4874 Uncharacterized protei 38.6 1.1E+02 0.0024 30.1 6.9 29 1-30 154-182 (318)
256 PF00403 HMA: Heavy-metal-asso 38.5 1.3E+02 0.0027 22.2 6.1 56 107-168 1-60 (62)
257 COG5638 Uncharacterized conser 37.9 1.1E+02 0.0025 32.2 7.3 36 5-40 146-186 (622)
258 PF14893 PNMA: PNMA 37.4 24 0.00052 36.4 2.4 50 5-56 18-71 (331)
259 PF08734 GYD: GYD domain; Int 34.8 1.9E+02 0.004 23.8 7.0 44 19-66 22-66 (91)
260 PF08206 OB_RNB: Ribonuclease 34.3 11 0.00023 28.4 -0.5 37 146-182 7-44 (58)
261 KOG4365 Uncharacterized conser 33.7 11 0.00024 39.8 -0.7 77 5-82 3-81 (572)
262 PF15513 DUF4651: Domain of un 33.2 86 0.0019 24.2 4.2 20 19-38 8-27 (62)
263 COG0445 GidA Flavin-dependent 32.6 1.1E+02 0.0023 33.9 6.4 92 48-139 237-335 (621)
264 smart00666 PB1 PB1 domain. Pho 31.8 2.4E+02 0.0051 22.0 7.0 61 112-178 16-78 (81)
265 COG0079 HisC Histidinol-phosph 31.1 5.4E+02 0.012 26.7 11.3 48 4-62 145-196 (356)
266 COG3254 Uncharacterized conser 30.2 1.4E+02 0.003 25.5 5.4 48 118-168 25-72 (105)
267 COG4010 Uncharacterized protei 29.9 1.2E+02 0.0025 27.5 5.1 47 112-168 118-164 (170)
268 PHA00019 IV phage assembly pro 29.0 2.6E+02 0.0057 29.7 8.8 29 13-41 24-52 (428)
269 PF11411 DNA_ligase_IV: DNA li 28.9 41 0.00089 23.1 1.6 16 15-30 19-34 (36)
270 PRK01178 rps24e 30S ribosomal 28.5 2.1E+02 0.0046 24.2 6.3 47 16-63 30-81 (99)
271 cd04908 ACT_Bt0572_1 N-termina 28.4 2.5E+02 0.0055 20.9 8.2 47 118-168 14-61 (66)
272 cd00874 RNA_Cyclase_Class_II R 28.3 3.2E+02 0.0069 28.1 8.9 47 107-154 188-237 (326)
273 KOG2854 Possible pfkB family c 28.1 2.3E+02 0.005 29.3 7.5 26 5-30 81-106 (343)
274 PRK08279 long-chain-acyl-CoA s 28.1 7E+02 0.015 27.1 12.2 114 15-163 470-594 (600)
275 KOG4008 rRNA processing protei 26.4 50 0.0011 32.3 2.4 33 103-135 38-70 (261)
276 PF00564 PB1: PB1 domain; Int 26.4 1.4E+02 0.0031 23.4 4.8 63 111-179 16-80 (84)
277 PRK10905 cell division protein 25.8 1E+02 0.0022 31.6 4.5 56 115-172 254-311 (328)
278 PRK09631 DNA topoisomerase IV 25.6 3E+02 0.0064 31.1 8.5 56 5-64 220-279 (635)
279 PRK08559 nusG transcription an 24.5 2E+02 0.0044 25.9 6.0 60 1-66 1-65 (153)
280 KOG2295 C2H2 Zn-finger protein 24.3 11 0.00023 41.0 -2.8 61 4-64 230-290 (648)
281 PF15513 DUF4651: Domain of un 24.1 81 0.0018 24.3 2.7 18 120-137 9-26 (62)
282 CHL00123 rps6 ribosomal protei 24.0 2.2E+02 0.0047 23.7 5.6 66 7-74 10-89 (97)
283 PTZ00191 60S ribosomal protein 23.9 5.5E+02 0.012 23.3 9.9 55 108-165 84-140 (145)
284 smart00434 TOP4c DNA Topoisome 23.9 2.1E+02 0.0047 30.7 6.9 58 5-63 232-293 (445)
285 PRK10560 hofQ outer membrane p 23.9 1.8E+02 0.0039 30.4 6.3 61 17-80 2-68 (386)
286 PF04278 Tic22: Tic22-like fam 23.6 5.1E+02 0.011 25.9 9.1 141 16-169 62-223 (274)
287 COG5353 Uncharacterized protei 23.2 3.2E+02 0.007 24.9 6.7 59 3-61 85-156 (161)
288 cd06398 PB1_Joka2 The PB1 doma 22.8 4.4E+02 0.0095 21.8 7.3 58 116-178 24-84 (91)
289 PRK10629 EnvZ/OmpR regulon mod 22.6 3.6E+02 0.0077 23.8 6.9 57 117-181 50-108 (127)
290 PF07876 Dabb: Stress responsi 22.3 4E+02 0.0088 21.2 7.1 56 9-64 5-71 (97)
291 KOG3424 40S ribosomal protein 22.2 1.6E+02 0.0035 25.8 4.4 46 16-62 34-84 (132)
292 PF15407 Spo7_2_N: Sporulation 22.0 26 0.00056 27.4 -0.3 27 3-29 25-51 (67)
293 PF10915 DUF2709: Protein of u 21.7 1.8E+02 0.0039 27.6 5.0 73 31-131 36-118 (238)
294 KOG4365 Uncharacterized conser 21.0 20 0.00043 37.9 -1.5 76 106-182 4-80 (572)
295 PF00276 Ribosomal_L23: Riboso 20.9 70 0.0015 26.4 2.0 52 8-59 22-85 (91)
296 PF07876 Dabb: Stress responsi 20.6 4.4E+02 0.0095 20.9 7.1 56 109-164 5-71 (97)
297 PHA01632 hypothetical protein 20.1 99 0.0022 23.3 2.4 21 108-128 19-39 (64)
298 KOG0156 Cytochrome P450 CYP2 s 20.1 1.5E+02 0.0033 32.2 4.9 58 9-75 36-97 (489)
299 PF08734 GYD: GYD domain; Int 20.1 4E+02 0.0087 21.8 6.4 45 119-167 22-67 (91)
300 PF09702 Cas_Csa5: CRISPR-asso 20.1 1.1E+02 0.0023 26.1 2.8 24 2-28 61-84 (105)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=4.8e-35 Score=298.88 Aligned_cols=170 Identities=20% Similarity=0.385 Sum_probs=154.0
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.+.++|||++||+++||++|+++|++||+|++|+|++|+.++++||||||+|+++++|++|| ++.+.|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 35789999999999999999999999999999999999999999999999999999999999 7899999999999988
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHH
Q 011912 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A 160 (475)
.+..+ ....++|||.|||+++||+||+++|++||+|++|+|++|+.++++|+||||+|+++++|
T Consensus 185 ~p~~~----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A 248 (346)
T TIGR01659 185 RPGGE----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEA 248 (346)
T ss_pred ccccc----------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHH
Confidence 65321 12346799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-ceeCC--eEEEEEEccCCCCCC
Q 011912 161 DKVLLKTF-HELNG--KMVEVKRAVPKELSP 188 (475)
Q Consensus 161 ~~Al~~~~-~~l~G--r~i~V~~a~~k~~~~ 188 (475)
++||++++ +.|.+ ++|+|++|+.+....
T Consensus 249 ~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 249 QEAISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCcccccc
Confidence 99999999 66765 789999988765443
No 2
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=273.99 Aligned_cols=239 Identities=53% Similarity=0.954 Sum_probs=196.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.+.++|||++|+|+++||.|+++|.+||+|.+|+||+|+.++++|+|+||+|++++...++| ...|+|+++.|+++++.
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 37899999999999999999999999999999999999999999999999999999999999 77899999999999999
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
++.++....+. ..+++|||+.||.++++++|++.|++||.|.++.|+.|+.+.++++|+||+|+++++++
T Consensus 84 ~r~~~~~~~~~----------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 84 SREDQTKVGRH----------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred Ccccccccccc----------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc
Confidence 98876654432 26789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceeCCeEEEEEEccCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q 011912 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQL---GTHNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG-RYGPVTI 237 (475)
Q Consensus 162 ~Al~~~~~~l~Gr~i~V~~a~~k~~~~~~~r~~~---gg~~~G~~~~~~~~~g~~~g~~~~~~GGyG~~~~g-r~g~~~g 237 (475)
+++.+..|+|++++|+|++|.|++.......... ....++..+...+...+-.++.+...-.|+.++.+ +|++...
T Consensus 154 kv~~~~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (311)
T KOG4205|consen 154 KVTLQKFHDFNGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFN 233 (311)
T ss_pred eecccceeeecCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccccccccccccccccccccC
Confidence 9999988999999999999999998876543221 12233333434445555666666655556665554 4444434
Q ss_pred CCCCCCCCCC-CCCC
Q 011912 238 GRSGFTTIGP-GYGM 251 (475)
Q Consensus 238 G~gg~g~~Gg-GyG~ 251 (475)
.+.+|..++. ++..
T Consensus 234 ~g~g~~~~~~~~~~~ 248 (311)
T KOG4205|consen 234 GGSGYPEFGNSGLGF 248 (311)
T ss_pred CCccccccCcccccc
Confidence 4555666653 4443
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.5e-30 Score=279.40 Aligned_cols=179 Identities=22% Similarity=0.456 Sum_probs=155.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||++++|++|+++|++||+|++|+|++|+.++++||||||+|.++++|++|| ++++.|.+|+|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4689999999999999999999999999999999999999999999999999999999999 78999999999998654
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
......... ..........++|||+|||+++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|+
T Consensus 186 ~~p~a~~~~-----~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 186 NMPQAQPII-----DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ccccccccc-----ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 322111000 000111234578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-ceeCCeEEEEEEccCCCCC
Q 011912 162 KVLLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 162 ~Al~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
+||+.+| .+|+|+.|+|.++.+++..
T Consensus 261 kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 9999999 8999999999999875543
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.1e-29 Score=251.03 Aligned_cols=178 Identities=26% Similarity=0.440 Sum_probs=146.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCccc-CCeEEEEeecC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI-DGRTVEAKKAV 81 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i-~gr~v~V~~a~ 81 (475)
-|.|||+.||.|+.|+||+.||++.|+|.+++||+|+.+|.+||||||.|+++++|++|| +|+++| .+|.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 579999999999999999999999999999999999999999999999999999999999 777766 47777776542
Q ss_pred CCc----------c--hhcc----------------------ccCC----------------------------------
Q 011912 82 PRD----------D--QNIQ----------------------NRNN---------------------------------- 93 (475)
Q Consensus 82 ~~~----------~--~~~~----------------------~~~~---------------------------------- 93 (475)
... + .++. .++.
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 211 0 0000 0000
Q ss_pred --CCCC---CCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011912 94 --SSIH---GSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 94 --~~~~---~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
.... ......+.+.|||+||+.++|||.|+++|++||.|++|++++| ||||+|.+.++|.+|++.+|
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~n 314 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETN 314 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhc
Confidence 0000 0012345678999999999999999999999999999999866 99999999999999999999
Q ss_pred -ceeCCeEEEEEEccCCCCCCCC
Q 011912 169 -HELNGKMVEVKRAVPKELSPGP 190 (475)
Q Consensus 169 -~~l~Gr~i~V~~a~~k~~~~~~ 190 (475)
++|+|..|+|.+|+|..+++..
T Consensus 315 gkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 315 GKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred CceecCceEEEEecCChhhhccc
Confidence 9999999999999998766543
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=6e-29 Score=266.73 Aligned_cols=174 Identities=27% Similarity=0.429 Sum_probs=137.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccC-CeEEEEeecC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID-GRTVEAKKAV 81 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~-gr~v~V~~a~ 81 (475)
.++|||+|||++++|++|+++|++||+|++|+|++| .++++||||||+|.++|+|++|| ++..+|. ++.|.|.++.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 589999999999999999999999999999999999 68999999999999999999999 6666664 5555544331
Q ss_pred CCc------------chh---------------c-------cccC----------------------CCC----------
Q 011912 82 PRD------------DQN---------------I-------QNRN----------------------NSS---------- 95 (475)
Q Consensus 82 ~~~------------~~~---------------~-------~~~~----------------------~~~---------- 95 (475)
... +.+ . ..+. ...
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 100 000 0 0000 000
Q ss_pred ----CC---CCCCCCCcceeeecCCCCCCCHHHHHHHHhhc--CceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHh
Q 011912 96 ----IH---GSPGPARTKKIFVGGLASTVTESDFKKYFDQF--GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166 (475)
Q Consensus 96 ----~~---~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~--G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~ 166 (475)
.. ........++|||+|||++++|++|+++|++| |.|++|++++ +||||+|+++++|++||+.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHH
Confidence 00 00011235789999999999999999999999 9999998764 4999999999999999998
Q ss_pred cC-ceeCCeEEEEEEccCCCCC
Q 011912 167 TF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 167 ~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
++ ++|++++|+|++++|++..
T Consensus 289 lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 289 LNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred hCCCEECCEEEEEEEccCCCcc
Confidence 88 8999999999999987654
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2e-29 Score=267.56 Aligned_cols=178 Identities=25% Similarity=0.455 Sum_probs=156.1
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++|| +++..+.+++|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 346789999999999999999999999999999999999999999999999999999999999 9999999999999876
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHH
Q 011912 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A 160 (475)
............. ........++|||+|||..+|+++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|
T Consensus 166 ~~~~~~~~~~~~~----~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 166 QAEKNRAAKAATH----QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred chhhhhhhhcccc----cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 5443322211110 011112368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-ceeCCeEEEEEEccC
Q 011912 161 DKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 161 ~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
++||+.++ .+|.+++|+|.++..
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccC
Confidence 99999988 899999999999874
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=261.15 Aligned_cols=174 Identities=26% Similarity=0.477 Sum_probs=153.5
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH---HcCcccCC--eEEE
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV---MQKHMIDG--RTVE 76 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al---~~~~~i~g--r~v~ 76 (475)
|.+.-||||+.||+.++|+||+++|++||.|.+|.|+|||.|+.++|||||+|.+.++|.+|+ .+.++|.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 445679999999999999999999999999999999999999999999999999999999999 34455554 6788
Q ss_pred EeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecC
Q 011912 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (475)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s 156 (475)
|++|..+.++. ..++||||+.|++.+||+||+++|.+||.|++|.|++|.. +.+||||||+|++
T Consensus 111 vk~Ad~E~er~---------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fst 174 (510)
T KOG0144|consen 111 VKYADGERERI---------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFST 174 (510)
T ss_pred ecccchhhhcc---------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEeh
Confidence 88876544332 3468999999999999999999999999999999999976 8999999999999
Q ss_pred HHHHHHHHHhcC--ceeCC--eEEEEEEccCCCCCCCCC
Q 011912 157 EEAVDKVLLKTF--HELNG--KMVEVKRAVPKELSPGPS 191 (475)
Q Consensus 157 ~e~A~~Al~~~~--~~l~G--r~i~V~~a~~k~~~~~~~ 191 (475)
.|.|..||+.+| +++.| .+|.|++|.+++++...+
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 999999999998 56766 589999999988876555
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.8e-29 Score=258.72 Aligned_cols=166 Identities=24% Similarity=0.497 Sum_probs=151.3
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||.+++|+||+++|++||+|++|+|++++.+++++|||||+|.++++|++|| +++..|.+++|.|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999999999999999999999999999999999 88999999999999886
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
+... ....++|||.|||.++++++|+++|++||.|+.+.|+.++.++.+++||||+|++.++|+
T Consensus 82 ~~~~----------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~ 145 (352)
T TIGR01661 82 PSSD----------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEAD 145 (352)
T ss_pred cccc----------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 5432 123468999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHhcC-ceeCC--eEEEEEEccCCC
Q 011912 162 KVLLKTF-HELNG--KMVEVKRAVPKE 185 (475)
Q Consensus 162 ~Al~~~~-~~l~G--r~i~V~~a~~k~ 185 (475)
+||+.++ ..+.+ ++|.|+++..+.
T Consensus 146 ~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 146 RAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999988 66666 678999887655
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=4.5e-29 Score=255.76 Aligned_cols=183 Identities=21% Similarity=0.408 Sum_probs=151.8
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCC--eEEEEee
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG--RTVEAKK 79 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~g--r~v~V~~ 79 (475)
..++|||+|||+++++++|+++|++||+|+.+.|++++.++.+++||||+|++.++|++|| ++...+.+ ++|.|++
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4678999999999999999999999999999999999888999999999999999999999 77777766 6788887
Q ss_pred cCCCcchhcc---c-------cCCCC------------------------------------------------CCC---
Q 011912 80 AVPRDDQNIQ---N-------RNNSS------------------------------------------------IHG--- 98 (475)
Q Consensus 80 a~~~~~~~~~---~-------~~~~~------------------------------------------------~~~--- 98 (475)
+......... . ..... ...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7543311000 0 00000 000
Q ss_pred ---------------CCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHH
Q 011912 99 ---------------SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163 (475)
Q Consensus 99 ---------------~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~A 163 (475)
........+|||+|||+++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00012234699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-ceeCCeEEEEEEccCCCC
Q 011912 164 LLKTF-HELNGKMVEVKRAVPKEL 186 (475)
Q Consensus 164 l~~~~-~~l~Gr~i~V~~a~~k~~ 186 (475)
|+.++ ..|+||+|+|.++..|+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCC
Confidence 99998 899999999999988764
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.8e-28 Score=231.71 Aligned_cols=178 Identities=25% Similarity=0.482 Sum_probs=154.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
+-.|||+.|..+++-|+||+.|.+||+|.+++|+||..|+++|||+||.|..+++|++|| ++.+-|..|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 457999999999999999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred CcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHH
Q 011912 83 RDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (475)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~ 162 (475)
|..........-...-.....+.++|||+||+.-+||++||+.|++||.|.+|+|.+| +||+||.|++.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 7632221111100001123456789999999999999999999999999999999988 5699999999999999
Q ss_pred HHHhcC-ceeCCeEEEEEEccCCCCCC
Q 011912 163 VLLKTF-HELNGKMVEVKRAVPKELSP 188 (475)
Q Consensus 163 Al~~~~-~~l~Gr~i~V~~a~~k~~~~ 188 (475)
||..+| .+|.|+.|+|.|-+......
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCCCCC
Confidence 999998 99999999999987765543
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.6e-27 Score=259.55 Aligned_cols=182 Identities=30% Similarity=0.524 Sum_probs=156.0
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccC----CeEEEE
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID----GRTVEA 77 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~----gr~v~V 77 (475)
+.++|||+|||+++||++|+++|++||+|++|+|+++. +++++|||||+|++.++|++|+ ++...|. ++.|.|
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 45689999999999999999999999999999999985 7899999999999999999999 7888898 999999
Q ss_pred eecCCCcchhccccCC--CCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEec
Q 011912 78 KKAVPRDDQNIQNRNN--SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYD 155 (475)
Q Consensus 78 ~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~ 155 (475)
.++..+.++....... .............+|||+||++++|+++|+++|++||.|++|+|+.| .++++||||||+|+
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFS 334 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeC
Confidence 9887765542211111 01111112345678999999999999999999999999999999999 57999999999999
Q ss_pred CHHHHHHHHHhcC-ceeCCeEEEEEEccCCCCC
Q 011912 156 SEEAVDKVLLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 156 s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
++++|++||+.++ +.|++++|.|.+|..++.+
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 9999999999988 8999999999999887654
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=3.2e-27 Score=257.11 Aligned_cols=166 Identities=30% Similarity=0.503 Sum_probs=148.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCCCc
Q 011912 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPRD 84 (475)
Q Consensus 7 ~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~~~ 84 (475)
.|||+|||.++||++|+++|++||+|++|+|++|+.|++++|||||+|.++++|++|| ++...|.+++|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999999999999999999999999999999999 77788999999999875322
Q ss_pred chhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHH
Q 011912 85 DQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al 164 (475)
.. ......+|||+|||.++++++|+++|++||.|+.|+|+.+. ++++||||||+|+++++|++|+
T Consensus 82 ~~--------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai 146 (562)
T TIGR01628 82 SL--------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAI 146 (562)
T ss_pred cc--------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHH
Confidence 11 11234579999999999999999999999999999999885 5789999999999999999999
Q ss_pred HhcC-ceeCCeEEEEEEccCCCCC
Q 011912 165 LKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 165 ~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
++++ ..++++.|.|....++..+
T Consensus 147 ~~lng~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 147 QKVNGMLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred HHhcccEecCceEEEecccccccc
Confidence 9998 8999999999876655443
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=4.5e-26 Score=244.93 Aligned_cols=178 Identities=17% Similarity=0.318 Sum_probs=142.7
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhc------------CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCc
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAF------------GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKH 68 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~------------G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~ 68 (475)
+.+.++|||+|||+++|+++|++||.++ ..|..+.+. +.++||||+|.+.++|++|| ++..
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 4568999999999999999999999975 233334333 35689999999999999999 8999
Q ss_pred ccCCeEEEEeecCCCcchhc-----cccCCC--------CCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeE
Q 011912 69 MIDGRTVEAKKAVPRDDQNI-----QNRNNS--------SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDV 135 (475)
Q Consensus 69 ~i~gr~v~V~~a~~~~~~~~-----~~~~~~--------~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v 135 (475)
.|.++.|+|.+......... ...... ...........++|||+|||+.+|+++|+++|++||.|+.+
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 99999999976543221100 000000 00011123456799999999999999999999999999999
Q ss_pred EEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCCC
Q 011912 136 VVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKE 185 (475)
Q Consensus 136 ~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~ 185 (475)
.|++++.+++++|||||+|++.++|++||+.++ +.|.+++|.|+++....
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999999999999999999999999999998 89999999999986543
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=8.7e-26 Score=213.43 Aligned_cols=170 Identities=24% Similarity=0.469 Sum_probs=154.0
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+...+.|.|--||..+|+|||+.+|..+|+|++|++++||.+|.+-||+||.|.++++|++|| ++...+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 344578999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHH
Q 011912 80 AVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (475)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~ 159 (475)
|+|..+. .+...|||.+||..+|..||+++|++||.|..-+|+.|..++.+||.+||.|+..++
T Consensus 118 ARPSs~~----------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 118 ARPSSDS----------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred ccCChhh----------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 9875543 455779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC-ceeC--CeEEEEEEccCCCCC
Q 011912 160 VDKVLLKTF-HELN--GKMVEVKRAVPKELS 187 (475)
Q Consensus 160 A~~Al~~~~-~~l~--Gr~i~V~~a~~k~~~ 187 (475)
|+.||+.+| ++-- -.+|+|++|..+..+
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCcccc
Confidence 999998888 4443 358999999765433
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=228.02 Aligned_cols=181 Identities=24% Similarity=0.437 Sum_probs=150.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
..+|.|+||||.+.+.+|+.+|+.||.|++|.|.+.+..+.+ |||||+|++..+|++|| ++.++|++|+|-|.||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 679999999999999999999999999999999988755555 99999999999999999 899999999999999977
Q ss_pred Ccchhcc------------------c-cC------------------C--CC----------------CCCCC-------
Q 011912 83 RDDQNIQ------------------N-RN------------------N--SS----------------IHGSP------- 100 (475)
Q Consensus 83 ~~~~~~~------------------~-~~------------------~--~~----------------~~~~~------- 100 (475)
+...+.. . .. . .. ...+.
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 6421110 0 00 0 00 00000
Q ss_pred ------------CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc-
Q 011912 101 ------------GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT- 167 (475)
Q Consensus 101 ------------~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~- 167 (475)
.....++|||+|||+++|||+|+++|++||.|..+.|+.++.|+.++|.|||.|.++.++.+||+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0011268999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---C---ceeCCeEEEEEEccCCCC
Q 011912 168 ---F---HELNGKMVEVKRAVPKEL 186 (475)
Q Consensus 168 ---~---~~l~Gr~i~V~~a~~k~~ 186 (475)
. ..|+||.|.|..|.++..
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHH
Confidence 2 378999999999987643
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=7.7e-25 Score=234.19 Aligned_cols=174 Identities=19% Similarity=0.313 Sum_probs=140.9
Q ss_pred cCcEEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 4 ELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 4 d~~~LfVgnLP~-d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
..++|||+|||+ ++|+++|+++|+.||.|++|+|++++ ++||||+|.++++|++|| ++++.|.+++|+|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 467999999998 69999999999999999999999974 589999999999999999 8999999999999987
Q ss_pred CCCcchhccccC--------CC----C--CCCC-------CCCCCcceeeecCCCCCCCHHHHHHHHhhcCc--eeeEEE
Q 011912 81 VPRDDQNIQNRN--------NS----S--IHGS-------PGPARTKKIFVGGLASTVTESDFKKYFDQFGI--ITDVVV 137 (475)
Q Consensus 81 ~~~~~~~~~~~~--------~~----~--~~~~-------~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~--I~~v~I 137 (475)
+.+......... .. . .... ....+.++|||.|||.+++|++|+++|++||. |+.|+|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 554321111000 00 0 0000 01135678999999999999999999999998 888888
Q ss_pred eecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeE------EEEEEccCC
Q 011912 138 MYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM------VEVKRAVPK 184 (475)
Q Consensus 138 ~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~------i~V~~a~~k 184 (475)
..++. .++++|||+|++.++|.+||.+++ ++|.++. |+|.+++++
T Consensus 429 ~~~~~--~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 429 FPKDN--ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ecCCC--CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 65442 357899999999999999999998 8999885 999998764
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=6.6e-25 Score=234.69 Aligned_cols=167 Identities=15% Similarity=0.235 Sum_probs=138.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHH----cCcccCCeEEEEeec
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM----QKHMIDGRTVEAKKA 80 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~----~~~~i~gr~v~V~~a 80 (475)
+++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|+++++|++||. +...|.+++|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999999975 3799999999999999992 568899999999998
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHH
Q 011912 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A 160 (475)
..+......... ..........+|+|.||++++|+++|+++|++||.|++|+|++++. +++|||+|+++++|
T Consensus 76 ~~~~~~~~~~~~----~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 76 TSQEIKRDGNSD----FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred CCcccccCCCCc----ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 765422211100 0011223456899999999999999999999999999999987643 46899999999999
Q ss_pred HHHHHhcC-ceeCC--eEEEEEEccCCC
Q 011912 161 DKVLLKTF-HELNG--KMVEVKRAVPKE 185 (475)
Q Consensus 161 ~~Al~~~~-~~l~G--r~i~V~~a~~k~ 185 (475)
++|++.++ .+|.+ +.|+|.+++++.
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 99999998 78854 589999988754
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=201.72 Aligned_cols=169 Identities=28% Similarity=0.461 Sum_probs=152.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
...+|||+||+..++|+.|.|+|-+.|+|++++|.+|+.+...+|||||||.++|+|+-|+ ++..++.+|+|+|.++.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3579999999999999999999999999999999999999999999999999999999999 88899999999999886
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceee-EEEeecCCCCccceEEEEEecCHHHH
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITD-VVVMYDHNTQRPRGFGFITYDSEEAV 160 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~-v~I~~d~~tg~~kG~aFV~F~s~e~A 160 (475)
.... ......+|||+||.+.++|..|.+.|+.||+|.. -+|++|.+|+.+++|+||.|++.|++
T Consensus 88 ~~~~---------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 88 AHQK---------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred cccc---------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 2111 1123478999999999999999999999998865 58999999999999999999999999
Q ss_pred HHHHHhcC-ceeCCeEEEEEEccCCCCC
Q 011912 161 DKVLLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 161 ~~Al~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
++|++.++ ..++.++|+|..+..+..+
T Consensus 153 d~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHhccchhcCCceEEEEEEecCCC
Confidence 99999999 8899999999999776644
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=2.6e-24 Score=231.27 Aligned_cols=180 Identities=19% Similarity=0.349 Sum_probs=146.4
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||+++++++|+++|+.||+|+.|.|++++.+++++|||||+|.+.++|++|| ++...|.+++|.|+++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 3579999999999999999999999999999999999989999999999999999999999 78999999999999986
Q ss_pred CCcchhccccCC---------C---CCCCCCCCCCcceeeecCCCCCC----------CHHHHHHHHhhcCceeeEEEee
Q 011912 82 PRDDQNIQNRNN---------S---SIHGSPGPARTKKIFVGGLASTV----------TESDFKKYFDQFGIITDVVVMY 139 (475)
Q Consensus 82 ~~~~~~~~~~~~---------~---~~~~~~~~~~~~~LfV~nLp~~~----------teedL~~~F~~~G~I~~v~I~~ 139 (475)
............ . ..........+++|+|.||.... ..++|+++|++||.|+.|.|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 543221111110 0 00001122356889999996421 2368999999999999999987
Q ss_pred c---CCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccC
Q 011912 140 D---HNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 140 d---~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
+ ..+...+|++||+|+++++|++||+.|+ .+|.|+.|.|.+...
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 5 2345668999999999999999999999 899999999998754
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=222.33 Aligned_cols=186 Identities=21% Similarity=0.438 Sum_probs=156.3
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011912 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
|+++.-+|||++||++++.++|.++|+.+|+|..|.++.++.+..+|||+||.|+-.|++++|+ .+...+.+|.|.|.
T Consensus 1 ~n~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 1 ENKSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVD 80 (678)
T ss_pred CCCCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccc
Confidence 3455689999999999999999999999999999999999988999999999999999999999 66778999999999
Q ss_pred ecCCCcchhcccc--CCCC----CCCCC----CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccce
Q 011912 79 KAVPRDDQNIQNR--NNSS----IHGSP----GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRG 148 (475)
Q Consensus 79 ~a~~~~~~~~~~~--~~~~----~~~~~----~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG 148 (475)
.+..+...+.... +... .+..+ ...+.-+|.|+||||.|.++||+.+|+.||.|.+|.|++.++. +-+|
T Consensus 81 ~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg-klcG 159 (678)
T KOG0127|consen 81 PAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG-KLCG 159 (678)
T ss_pred cccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC-Cccc
Confidence 8876654331111 1000 00000 1122458999999999999999999999999999999987764 4459
Q ss_pred EEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCCCCC
Q 011912 149 FGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 149 ~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
||||.|....+|.+||+.+| ++|+||+|-|.||.++..-
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 99999999999999999999 9999999999999998653
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.5e-24 Score=208.07 Aligned_cols=148 Identities=24% Similarity=0.531 Sum_probs=135.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCCC
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~~ 83 (475)
-+|||+|||.++++.+|+.+|++||+|++|+|+++ |+||..++++.|+.|| ++.-+|++..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 48999999999999999999999999999999996 8999999999999999 6677899999999988765
Q ss_pred cchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHH
Q 011912 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~A 163 (475)
. ....||+|.||.+.|+.+||++.|++||.|++|+|++| |+||+|+..++|..|
T Consensus 75 s------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 S------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEA 128 (346)
T ss_pred C------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHH
Confidence 2 34578999999999999999999999999999999966 999999999999999
Q ss_pred HHhcC-ceeCCeEEEEEEccCCCCC
Q 011912 164 LLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 164 l~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
++.++ .+|+|+++.|.....+-..
T Consensus 129 ir~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred Hhcccccccccceeeeeeecccccc
Confidence 99888 9999999999998775543
No 22
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.89 E-value=9.4e-21 Score=193.46 Aligned_cols=174 Identities=21% Similarity=0.407 Sum_probs=145.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~~ 83 (475)
...|-+++|||++|++||.+||+.+. |+++++.++ +++.+|-|||||+++|++++|| ++...+..|.|+|.++..+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 45788999999999999999999995 888776664 7999999999999999999999 7888899999999998776
Q ss_pred cchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceee-EEEeecCCCCccceEEEEEecCHHHHHH
Q 011912 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITD-VVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~-v~I~~d~~tg~~kG~aFV~F~s~e~A~~ 162 (475)
+.....++.... .......|.+++||+.||++||.+||+..-+|.+ |.++.|+ .+++.|.|||.|++.|+|++
T Consensus 87 e~d~~~~~~g~~-----s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 87 EADWVMRPGGPN-----SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred cccccccCCCCC-----CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHH
Confidence 654433322211 1135678999999999999999999999877766 4455554 47899999999999999999
Q ss_pred HHHhcCceeCCeEEEEEEccCCCCC
Q 011912 163 VLLKTFHELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 163 Al~~~~~~l~Gr~i~V~~a~~k~~~ 187 (475)
||.++.+.|..|.|+|.++...+.+
T Consensus 161 Al~rhre~iGhRYIEvF~Ss~~e~~ 185 (510)
T KOG4211|consen 161 ALGRHRENIGHRYIEVFRSSRAEVK 185 (510)
T ss_pred HHHHHHHhhccceEEeehhHHHHHH
Confidence 9999999999999999988655443
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=4.6e-22 Score=211.22 Aligned_cols=175 Identities=22% Similarity=0.368 Sum_probs=141.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
.++|||+|||.+++|++|+++|++||+|+.|.|++++.++++++||||+|.+.++|++|| +++..|.+++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 489999999999999999999999999999999999988999999999999999999999 889999999999999642
Q ss_pred Ccchhccc------------------------------cC---------------------CC--CC-------------
Q 011912 83 RDDQNIQN------------------------------RN---------------------NS--SI------------- 96 (475)
Q Consensus 83 ~~~~~~~~------------------------------~~---------------------~~--~~------------- 96 (475)
........ .. .. ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21100000 00 00 00
Q ss_pred -----CCCC---CCCCcceeeecCCCCCCC----------HHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHH
Q 011912 97 -----HGSP---GPARTKKIFVGGLASTVT----------ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158 (475)
Q Consensus 97 -----~~~~---~~~~~~~LfV~nLp~~~t----------eedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e 158 (475)
...+ .....++|+|.||....+ ++||+++|++||.|++|.|... ...|++||+|++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHH
Confidence 0000 124567899999966554 3789999999999999988633 45799999999999
Q ss_pred HHHHHHHhcC-ceeCCeEEEEEEccC
Q 011912 159 AVDKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 159 ~A~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
+|++|++.|+ ..|+|+.|+|.+...
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 9999999999 899999999998754
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.5e-23 Score=204.51 Aligned_cols=177 Identities=23% Similarity=0.469 Sum_probs=153.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
.|+|||+.|.+++.||.|+..|..||+|++|.+-.|+.|+++|+||||||+-+|.|.-|+ +|...+.+|.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999 899999999999985433
Q ss_pred CcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHH
Q 011912 83 RDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (475)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~ 162 (475)
....+..... ...+...-++|||..++.+++|+||+.+|+.||+|+.|.+.+++.....|||+||||.+..+...
T Consensus 193 mpQAQpiID~-----vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 193 MPQAQPIIDM-----VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CcccchHHHH-----HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 2211100000 00012345789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC-ceeCCeEEEEEEccCCCC
Q 011912 163 VLLKTF-HELNGKMVEVKRAVPKEL 186 (475)
Q Consensus 163 Al~~~~-~~l~Gr~i~V~~a~~k~~ 186 (475)
||..+| .+|.|..|+|-++..++.
T Consensus 268 AiasMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred HhhhcchhhcccceEecccccCCCc
Confidence 999999 899999999998866543
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=4.7e-21 Score=181.47 Aligned_cols=182 Identities=26% Similarity=0.442 Sum_probs=149.9
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCC--eEEEEee
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG--RTVEAKK 79 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~g--r~v~V~~ 79 (475)
+.-.|||.+||+.+|.+||+++|++||.|..-+|+.|..|+.+||.+||.|...++|+.|| ++.++-.+ .+|.|+.
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 3568999999999999999999999999999999999999999999999999999999999 67665544 6788888
Q ss_pred cCCCcchhcc-----------ccCCCCCC------------------------------------CCCCCCCcceeeecC
Q 011912 80 AVPRDDQNIQ-----------NRNNSSIH------------------------------------GSPGPARTKKIFVGG 112 (475)
Q Consensus 80 a~~~~~~~~~-----------~~~~~~~~------------------------------------~~~~~~~~~~LfV~n 112 (475)
+......... .+.....+ .+..+...-+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 7543211000 00000000 011122345899999
Q ss_pred CCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCCC
Q 011912 113 LASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKE 185 (475)
Q Consensus 113 Lp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~ 185 (475)
|.++++|.-|-++|.+||.|+.|+|++|..|.+.|||+||++.+-++|..||..+| ..|.+|.|.|.+...+.
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999986553
No 26
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=9.2e-22 Score=203.13 Aligned_cols=184 Identities=23% Similarity=0.431 Sum_probs=157.7
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
|+|.++||+-.|+..+++.+|.+||+.+|+|.+|.|+.|+.+.++||.|||||.|.+.+..|| +.++.+.+.+|.|...
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 578899999999999999999999999999999999999999999999999999999999999 9999999999999876
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHH
Q 011912 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A 160 (475)
...+........ .........+..+|||+||+++++|++|+.+|+.||.|+.|.+++|.+|++.|||+||+|.+.++|
T Consensus 256 Eaeknr~a~~s~--a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 256 EAEKNRAANASP--ALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHHHhccc--cccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 544333111111 111111223445599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-ceeCCeEEEEEEccCCCCC
Q 011912 161 DKVLLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 161 ~~Al~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
++|++++| .+|-|+.|+|.....+...
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeeccc
Confidence 99999999 8999999999876655443
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.5e-20 Score=193.49 Aligned_cols=155 Identities=29% Similarity=0.480 Sum_probs=141.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCCC
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~~ 83 (475)
..|||+ +++||..|.++|+++++|++|+|.+|. | +-|||||.|.++++|++|| ++-..+.+++|+|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999997 6 9999999999999999999 8888999999999987643
Q ss_pred cchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHH
Q 011912 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~A 163 (475)
.. .|||.||+++++..+|.++|+.||.|+.|++..|++ + +||| ||+|+++++|++|
T Consensus 76 ~~---------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 76 PS---------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKA 131 (369)
T ss_pred Cc---------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHH
Confidence 22 199999999999999999999999999999999986 4 8999 9999999999999
Q ss_pred HHhcC-ceeCCeEEEEEEccCCCCCCCC
Q 011912 164 LLKTF-HELNGKMVEVKRAVPKELSPGP 190 (475)
Q Consensus 164 l~~~~-~~l~Gr~i~V~~a~~k~~~~~~ 190 (475)
|+++| ..+.+++|.|....+++.+..+
T Consensus 132 i~~~ng~ll~~kki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 132 IEKLNGMLLNGKKIYVGLFERKEEREAP 159 (369)
T ss_pred HHHhcCcccCCCeeEEeeccchhhhccc
Confidence 99999 8999999999998887765433
No 28
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=4.5e-21 Score=182.21 Aligned_cols=184 Identities=21% Similarity=0.412 Sum_probs=152.0
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcC-cccCC--eEEEEe
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQK-HMIDG--RTVEAK 78 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~-~~i~g--r~v~V~ 78 (475)
|++||||+.|.+.-.|||++.+|..||+|++|.+++.+ ++.+||||||+|++..+|..|| ++. +++.+ ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67999999999999999999999999999999999986 7999999999999999999999 443 34443 567788
Q ss_pred ecCCCcchhcccc-------------------------------------------------------------------
Q 011912 79 KAVPRDDQNIQNR------------------------------------------------------------------- 91 (475)
Q Consensus 79 ~a~~~~~~~~~~~------------------------------------------------------------------- 91 (475)
.+...+++..+.-
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 7766542211000
Q ss_pred ---------CCCC-------------------------------------------CC----------------------
Q 011912 92 ---------NNSS-------------------------------------------IH---------------------- 97 (475)
Q Consensus 92 ---------~~~~-------------------------------------------~~---------------------- 97 (475)
.... ..
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0000 00
Q ss_pred ---------------------CCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecC
Q 011912 98 ---------------------GSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (475)
Q Consensus 98 ---------------------~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s 156 (475)
...+.++.+.|||-.||.+..+.||.++|-.||.|+..+|..|+.|+.+|.|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00012345789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-ceeCCeEEEEEEccCCCCCC
Q 011912 157 EEAVDKVLLKTF-HELNGKMVEVKRAVPKELSP 188 (475)
Q Consensus 157 ~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~~~~ 188 (475)
+.++++||..+| ..|.=|+|+|...+||+..+
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 999999999999 89999999999999988654
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.84 E-value=5.9e-21 Score=201.82 Aligned_cols=174 Identities=25% Similarity=0.417 Sum_probs=147.1
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCC---CCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT---GRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~t---G~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
..++|||.||++++|.++|+++|...|.|+.|.|.+.+.. -.+.||+||+|.++++|++|+ ++.+.|+++.|+|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3456999999999999999999999999999988776422 135599999999999999999 67899999999999
Q ss_pred ecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHH
Q 011912 79 KAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158 (475)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e 158 (475)
.+..+...... ..........+|+|+|||+.++..+|+++|..||.|..|+|++.......+|||||+|-+++
T Consensus 594 ~S~~k~~~~~g-------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 594 ISENKPASTVG-------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred eccCccccccc-------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 98733322222 11112233679999999999999999999999999999999988666778999999999999
Q ss_pred HHHHHHHhcC-ceeCCeEEEEEEccCC
Q 011912 159 AVDKVLLKTF-HELNGKMVEVKRAVPK 184 (475)
Q Consensus 159 ~A~~Al~~~~-~~l~Gr~i~V~~a~~k 184 (475)
+|.+|++.+. +.|-||+|.+.||..-
T Consensus 667 ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHHHHHhhcccceechhhheehhccc
Confidence 9999999988 8899999999999753
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.8e-20 Score=177.33 Aligned_cols=140 Identities=22% Similarity=0.457 Sum_probs=121.0
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEEEeecC
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~a~ 81 (475)
+.+.|+|||+||..++||+-|..||.++|+|+.|+|+.| .|+|.++.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWAT 49 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhcccccc
Confidence 467899999999999999999999999999999999986 34455554
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
....+. .+.......|||+.|...++-|+||+.|.+||+|.+++|++|..|+++|||+||.|...++|+
T Consensus 50 ~p~nQs-----------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAE 118 (321)
T KOG0148|consen 50 APGNQS-----------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAE 118 (321)
T ss_pred CcccCC-----------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHH
Confidence 331111 111223567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-ceeCCeEEEEEEccCCC
Q 011912 162 KVLLKTF-HELNGKMVEVKRAVPKE 185 (475)
Q Consensus 162 ~Al~~~~-~~l~Gr~i~V~~a~~k~ 185 (475)
.||+.|+ ..|..|.|+-.||..|.
T Consensus 119 nAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 119 NAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHhCCeeeccceeeccccccCc
Confidence 9999999 89999999999998776
No 31
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=8.6e-19 Score=158.88 Aligned_cols=159 Identities=19% Similarity=0.319 Sum_probs=129.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
..+++|||+|||.++-|+||+++|-+||.|.+|.|...+ ....||||+|+++.+|+.|| .+.-.+++..|+|+.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457999999999999999999999999999999987653 34579999999999999999 8889999999999988
Q ss_pred CCCcchhccccC----------CCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEE
Q 011912 81 VPRDDQNIQNRN----------NSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFG 150 (475)
Q Consensus 81 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~a 150 (475)
..-.......-. .......+......+|.|.+||.+.+|+|||++..+-|.|....+.+| +.+
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 654321111000 001111233445678999999999999999999999999999988877 379
Q ss_pred EEEecCHHHHHHHHHhcC-cee
Q 011912 151 FITYDSEEAVDKVLLKTF-HEL 171 (475)
Q Consensus 151 FV~F~s~e~A~~Al~~~~-~~l 171 (475)
.|+|...|+++-||.++. ..+
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeehhhHHHHHHhhccccc
Confidence 999999999999999987 444
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.9e-19 Score=183.98 Aligned_cols=170 Identities=23% Similarity=0.460 Sum_probs=150.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
+|...|||.||+++++.++|.++|+.||+|++|+|+++. ++ ++|| ||+|+++++|++|| +++..+.+++|.|...
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 566679999999999999999999999999999999996 45 9999 99999999999999 8999999999999988
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHH
Q 011912 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A 160 (475)
..+.++.....+ .......++|.+++.++++++|+++|.++|.|+.+.++.+.. +++++|+||.|+++++|
T Consensus 151 ~~~~er~~~~~~--------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a 221 (369)
T KOG0123|consen 151 ERKEEREAPLGE--------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDA 221 (369)
T ss_pred cchhhhcccccc--------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHH
Confidence 777665443322 123456799999999999999999999999999999999876 56899999999999999
Q ss_pred HHHHHhcC-ceeCCeEEEEEEccCC
Q 011912 161 DKVLLKTF-HELNGKMVEVKRAVPK 184 (475)
Q Consensus 161 ~~Al~~~~-~~l~Gr~i~V~~a~~k 184 (475)
+.|++.++ ..+.++.+-|..+..+
T Consensus 222 ~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 222 KKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred HHHHHhccCCcCCccceeecccccc
Confidence 99999999 7888899999888764
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.3e-19 Score=181.97 Aligned_cols=182 Identities=22% Similarity=0.422 Sum_probs=150.4
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--Hc-CcccCC--eEEEEe
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ-KHMIDG--RTVEAK 78 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~-~~~i~g--r~v~V~ 78 (475)
+++||||+.|++.+||.||+++|.+||.|++|.|++|. .+.+||||||+|.++|.|..|| +| .+++.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999996 7899999999999999999999 33 345554 689999
Q ss_pred ecCCCcchhccccC------------------------------------------------------------------
Q 011912 79 KAVPRDDQNIQNRN------------------------------------------------------------------ 92 (475)
Q Consensus 79 ~a~~~~~~~~~~~~------------------------------------------------------------------ 92 (475)
+|.+++++..+...
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 99776532111000
Q ss_pred --------------C------CC------C---------C----------------------------------------
Q 011912 93 --------------N------SS------I---------H---------------------------------------- 97 (475)
Q Consensus 93 --------------~------~~------~---------~---------------------------------------- 97 (475)
. .. . .
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 0 00 0 0
Q ss_pred -------------------------------------------------------CCCCCCCcceeeecCCCCCCCHHHH
Q 011912 98 -------------------------------------------------------GSPGPARTKKIFVGGLASTVTESDF 122 (475)
Q Consensus 98 -------------------------------------------------------~~~~~~~~~~LfV~nLp~~~teedL 122 (475)
...+-.....|||..||.+.-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 0001112356999999999999999
Q ss_pred HHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCCCC
Q 011912 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKEL 186 (475)
Q Consensus 123 ~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~~ 186 (475)
...|..||.|+..++..|+.|+-+|.|+||.|++..+|.+||..++ ..|..++++|...+.+..
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999999999999999999999999999999999999999999 899999999998876543
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=3.6e-18 Score=154.13 Aligned_cols=85 Identities=31% Similarity=0.589 Sum_probs=79.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+|||+++||+||+++|++||.|++|+|++|+.++++|+||||+|+++++|++||+.++ ++|++++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 456789999999999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred cCCCCC
Q 011912 182 VPKELS 187 (475)
Q Consensus 182 ~~k~~~ 187 (475)
++++..
T Consensus 112 ~~~~~~ 117 (144)
T PLN03134 112 NDRPSA 117 (144)
T ss_pred CcCCCC
Confidence 876553
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.76 E-value=4.6e-17 Score=175.72 Aligned_cols=78 Identities=19% Similarity=0.495 Sum_probs=74.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
.++|||+|||+++++++|+++|++||+|++|+|++++.++++||||||+|.++++|.+|| +|...|.++.|+|.++.+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999989999999999999999999999 899999999999988764
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.75 E-value=3.3e-17 Score=164.84 Aligned_cols=179 Identities=24% Similarity=0.378 Sum_probs=146.3
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhh-cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQA-FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~-~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
...|.+||.|||+|+.|++||+||++ .|+|+.|.|+.|. .+++||||.|||+++|.++||+ ++++.+.+|+|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34567999999999999999999975 8999999999996 8999999999999999999999 899999999999987
Q ss_pred cCCCcchhcc------------------------------------------c---c-CCC-CC----------------
Q 011912 80 AVPRDDQNIQ------------------------------------------N---R-NNS-SI---------------- 96 (475)
Q Consensus 80 a~~~~~~~~~------------------------------------------~---~-~~~-~~---------------- 96 (475)
....+..+.. . + +.. ..
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 6543211000 0 0 000 00
Q ss_pred ------CCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-c
Q 011912 97 ------HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H 169 (475)
Q Consensus 97 ------~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~ 169 (475)
.....++...++||.||.+.+....|++.|.--|.|+.|.+-.||+ +.++|+|.|+|+++-.|..||.+++ .
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccC
Confidence 0011344567899999999999999999999999999999999987 6899999999999999999999998 6
Q ss_pred eeCCeEEEEEEccC
Q 011912 170 ELNGKMVEVKRAVP 183 (475)
Q Consensus 170 ~l~Gr~i~V~~a~~ 183 (475)
-+..++.+|...+-
T Consensus 280 g~~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 280 GLFDRRMTVRLDRI 293 (608)
T ss_pred CCccccceeecccc
Confidence 67778877777543
No 37
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.5e-17 Score=157.20 Aligned_cols=160 Identities=24% Similarity=0.456 Sum_probs=129.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCCC
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~~ 83 (475)
.+|||++||+.+.+++|++||..||.|.+|.+.. +|+||+|.+..+|+.|| ++...|.+..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5899999999999999999999999999888766 58999999999999999 8888888888888887653
Q ss_pred cchhccccCC----CCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHH
Q 011912 84 DDQNIQNRNN----SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (475)
Q Consensus 84 ~~~~~~~~~~----~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~ 159 (475)
.......... ......+.......|.|.+|+..+.|++|++.|+++|+++..++. +.++||+|+++++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhh
Confidence 3222110000 011122234456789999999999999999999999999655552 4489999999999
Q ss_pred HHHHHHhcC-ceeCCeEEEEEEc
Q 011912 160 VDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 160 A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
+++||++++ .+|.++.|+|...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 999999999 8999999999544
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=7.7e-17 Score=145.46 Aligned_cols=81 Identities=43% Similarity=0.814 Sum_probs=76.6
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||+|||++++|++|+++|++||+|++|+|++|+.|+++|+||||+|+++++|++|| ++.+.|++++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4689999999999999999999999999999999999999999999999999999999999 68899999999999987
Q ss_pred CCc
Q 011912 82 PRD 84 (475)
Q Consensus 82 ~~~ 84 (475)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 654
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.69 E-value=6.3e-16 Score=145.14 Aligned_cols=169 Identities=18% Similarity=0.329 Sum_probs=134.0
Q ss_pred cEEEEcCCCCCCcHHHHHH----HHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011912 6 GKLFIGGISWDTNEDRLRD----YFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke----~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
.||||.||+..+..+||++ +|++||+|.+|...+ |.+.||-|||.|++.+.|..|+ +++..+.+++++|.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999999998 999999999988877 4578999999999999999999 888999999999999
Q ss_pred cCCCcchhcccc-------------------CCC-CC----------CC----CCCCCCcceeeecCCCCCCCHHHHHHH
Q 011912 80 AVPRDDQNIQNR-------------------NNS-SI----------HG----SPGPARTKKIFVGGLASTVTESDFKKY 125 (475)
Q Consensus 80 a~~~~~~~~~~~-------------------~~~-~~----------~~----~~~~~~~~~LfV~nLp~~~teedL~~~ 125 (475)
|+.+...-.+.+ ... .. .. .....+...||+.|||..++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 876553222100 000 00 00 112456678999999999999999999
Q ss_pred HhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC-CeEEEEEEcc
Q 011912 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN-GKMVEVKRAV 182 (475)
Q Consensus 126 F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~-Gr~i~V~~a~ 182 (475)
|++|.-..+|+++... ++.|||+|.++..+..|...+. ..|. ...+.|.+++
T Consensus 167 f~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999988643 4599999999988888887766 3443 6677776653
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.64 E-value=1.3e-14 Score=148.72 Aligned_cols=174 Identities=19% Similarity=0.302 Sum_probs=132.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeE-EEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLE-AVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~-v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~ 82 (475)
...|-+++||+.|||+||.+||+.+-.|.. |.++.++ .+++.|-|||+|++++.|++|| .+++.|..|.|+|.++..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 568999999999999999999999866665 4455554 6789999999999999999999 899999999999987633
Q ss_pred Ccchhcc------------------ccC----------------------------------C------------CCCCC
Q 011912 83 RDDQNIQ------------------NRN----------------------------------N------------SSIHG 98 (475)
Q Consensus 83 ~~~~~~~------------------~~~----------------------------------~------------~~~~~ 98 (475)
.+..... .+. . .....
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 2211110 000 0 00000
Q ss_pred C--C-----------CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHH
Q 011912 99 S--P-----------GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165 (475)
Q Consensus 99 ~--~-----------~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~ 165 (475)
. + .......++.+.||+..++.||..+|...-.+ .|.|-.. ++++..|.|+|+|++.++|..|+.
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhc
Confidence 0 0 01122678999999999999999999987655 4555444 348999999999999999999999
Q ss_pred hcCceeCCeEEEEEEc
Q 011912 166 KTFHELNGKMVEVKRA 181 (475)
Q Consensus 166 ~~~~~l~Gr~i~V~~a 181 (475)
+.+..+..+.|++...
T Consensus 340 kd~anm~hrYVElFln 355 (510)
T KOG4211|consen 340 KDGANMGHRYVELFLN 355 (510)
T ss_pred cCCcccCcceeeeccc
Confidence 9988899999998876
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.64 E-value=1.5e-15 Score=157.45 Aligned_cols=173 Identities=22% Similarity=0.421 Sum_probs=132.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
..+|||+||..+++|++|+.+|+.||+|+.|.+++|..||++|||+||+|.++++|++|+ +|+.+|.|+.|+|.....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 345999999999999999999999999999999999889999999999999999999998 889999999999864322
Q ss_pred Ccchhcc---c--cC-----------------------CC----------------------------CCCCCCCC----
Q 011912 83 RDDQNIQ---N--RN-----------------------NS----------------------------SIHGSPGP---- 102 (475)
Q Consensus 83 ~~~~~~~---~--~~-----------------------~~----------------------------~~~~~~~~---- 102 (475)
+...... . .. .. ......+.
T Consensus 358 r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p 437 (549)
T KOG0147|consen 358 RVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASP 437 (549)
T ss_pred ecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccc
Confidence 2111100 0 00 00 00000112
Q ss_pred ---CCcceeeecCCCCCCCH----------HHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-
Q 011912 103 ---ARTKKIFVGGLASTVTE----------SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF- 168 (475)
Q Consensus 103 ---~~~~~LfV~nLp~~~te----------edL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~- 168 (475)
.++.|+.|+|+=...|| |||++.+.+||.|..|.|-+. +-|+.||.|.+.++|.+|+..++
T Consensus 438 ~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 438 AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhh
Confidence 45667777776443332 678888899999988766432 23899999999999999999999
Q ss_pred ceeCCeEEEEEEcc
Q 011912 169 HELNGKMVEVKRAV 182 (475)
Q Consensus 169 ~~l~Gr~i~V~~a~ 182 (475)
..|.+|.|++++-.
T Consensus 513 rWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 513 RWFAGRMITAKYLP 526 (549)
T ss_pred hhhccceeEEEEee
Confidence 89999999998854
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=4.8e-15 Score=142.81 Aligned_cols=157 Identities=24% Similarity=0.483 Sum_probs=120.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
.++|||+|||+++++++|+++|.+||+|..|.|..++.++++++||||+|.++++|.+|+ ++...|.+++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 489999999999999999999999999999999999889999999999999999999999 777999999999999653
Q ss_pred ----Ccchhcc----ccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEe
Q 011912 83 ----RDDQNIQ----NRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITY 154 (475)
Q Consensus 83 ----~~~~~~~----~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F 154 (475)
+...... ..................+++.+++..++++++..+|..++.+..+.+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 2221100 00011112223345677899999999999999999999999997777766654443433334333
Q ss_pred cCHHHHH
Q 011912 155 DSEEAVD 161 (475)
Q Consensus 155 ~s~e~A~ 161 (475)
.....+.
T Consensus 275 ~~~~~~~ 281 (306)
T COG0724 275 EASKDAL 281 (306)
T ss_pred hHHHhhh
Confidence 3333333
No 43
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=143.68 Aligned_cols=79 Identities=41% Similarity=0.887 Sum_probs=74.2
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~ 82 (475)
..+||||++|+|+++.|+|+++|++||+|++++|+.||.|+|+|||+||.|+|.|.|++|+ --+..|+||+..++.|..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 4579999999999999999999999999999999999999999999999999999999999 457889999999988754
No 44
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.4e-15 Score=141.70 Aligned_cols=81 Identities=35% Similarity=0.622 Sum_probs=77.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEcc
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~ 182 (475)
..-.||||++|+|++++|+|+++||+||+|++.+|+.|+.++|+|||+||+|.|.|+|.+|++..+..|+||+..|++|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C
Q 011912 183 P 183 (475)
Q Consensus 183 ~ 183 (475)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 45
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.59 E-value=4.5e-15 Score=152.16 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=79.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011912 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|||.+||+++||++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.++ ++|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EccCCC
Q 011912 180 RAVPKE 185 (475)
Q Consensus 180 ~a~~k~ 185 (475)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=8.3e-15 Score=155.61 Aligned_cols=175 Identities=18% Similarity=0.281 Sum_probs=131.0
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
++..+.|+|+|||..+..++|.+.|..||+|..|.+... |. -++|+|.++.+|++|+ +.-..+...++.+.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 356789999999999999999999999999999855422 11 3899999999999999 555566666666666
Q ss_pred cCCCcchhc------------c------cc---CCCCC--CCC-----------CCCCCcceeeecCCCCCCCHHHHHHH
Q 011912 80 AVPRDDQNI------------Q------NR---NNSSI--HGS-----------PGPARTKKIFVGGLASTVTESDFKKY 125 (475)
Q Consensus 80 a~~~~~~~~------------~------~~---~~~~~--~~~-----------~~~~~~~~LfV~nLp~~~teedL~~~ 125 (475)
+........ . .+ .+... ... .......+|||.||++++|.++|+.+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 532221100 0 00 00000 000 01112234999999999999999999
Q ss_pred HhhcCceeeEEEeecCCCC---ccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011912 126 FDQFGIITDVVVMYDHNTQ---RPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 126 F~~~G~I~~v~I~~d~~tg---~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
|.+.|.|+.|.|.+.++.- .+.||+||+|.++++|++|++.|+ +.|+|+.|.|+++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999887665421 245999999999999999999999 99999999999987
No 47
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.58 E-value=1.8e-15 Score=150.31 Aligned_cols=180 Identities=19% Similarity=0.282 Sum_probs=139.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhh---cC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEee
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQA---FG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~---~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~ 79 (475)
.-.|-+++||+|+++.||.+||.. .. .++.|.+++. .++|.+|-|||.|..+++|++|| ++++.|..|.|++.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 446788999999999999999963 22 3445555554 48999999999999999999999 888999999999988
Q ss_pred cCCCcchhccccCCCCC---------------CCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceee---EEEeecC
Q 011912 80 AVPRDDQNIQNRNNSSI---------------HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITD---VVVMYDH 141 (475)
Q Consensus 80 a~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~---v~I~~d~ 141 (475)
+...+.++..++..... ...+......+|.+++||+..+.|||.++|..|-.-++ |.++.+.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 87666554433322110 01122334678999999999999999999998865333 5666665
Q ss_pred CCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCCCC
Q 011912 142 NTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKEL 186 (475)
Q Consensus 142 ~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~~ 186 (475)
+ +++.|.|||+|.++|+|.+|..+++ +..+.|.|+|..+...+.
T Consensus 320 q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 320 Q-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred C-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 4 8999999999999999999999988 555699999998866544
No 48
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.9e-15 Score=146.26 Aligned_cols=91 Identities=21% Similarity=0.404 Sum_probs=85.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
.+-++|||.-|+++++|.+|++.|++||.|+.|.|+.|+.|+++||||||+|+++.++++|.+..+ ..|+++.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 667999999999999999999999999999999999999999999999999999999999999988 8999999999999
Q ss_pred cCCCCCCCCCCC
Q 011912 182 VPKELSPGPSRN 193 (475)
Q Consensus 182 ~~k~~~~~~~r~ 193 (475)
.-+..+..-+|.
T Consensus 179 RgRTvkgW~PRR 190 (335)
T KOG0113|consen 179 RGRTVKGWLPRR 190 (335)
T ss_pred cccccccccccc
Confidence 888877665543
No 49
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=4.9e-14 Score=145.50 Aligned_cols=179 Identities=25% Similarity=0.413 Sum_probs=128.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCC--Cccc---EEEEEEcCHHHHHHHHHcCcccCC-eEEE
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATG--RARG---FGFIVFADPAVAERVVMQKHMIDG-RTVE 76 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG--~srG---~aFVeF~s~e~A~~Al~~~~~i~g-r~v~ 76 (475)
.-+++|||+.||++++|++|...|..||.|..-+-.+....+ -++| |+|+.|+++..+++.|.....-.+ ..+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 457899999999999999999999999987643332221122 3567 999999999999888844333222 2222
Q ss_pred EeecCCCcchhccccCC------CCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHh-hcCceeeEEEeecCCCCccceE
Q 011912 77 AKKAVPRDDQNIQNRNN------SSIHGSPGPARTKKIFVGGLASTVTESDFKKYFD-QFGIITDVVVMYDHNTQRPRGF 149 (475)
Q Consensus 77 V~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~-~~G~I~~v~I~~d~~tg~~kG~ 149 (475)
|.....+.. +.+.+.. ........-.+.+||||+.||..++.+||..+|+ .||.|+.+-|-.|++-..+||-
T Consensus 337 vss~~~k~k-~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 337 VSSPTIKDK-EVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EecCccccc-ceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 322211111 1111110 0111233446789999999999999999999998 7999999999999888999999
Q ss_pred EEEEecCHHHHHHHHHhcCceeC----CeEEEEEEcc
Q 011912 150 GFITYDSEEAVDKVLLKTFHELN----GKMVEVKRAV 182 (475)
Q Consensus 150 aFV~F~s~e~A~~Al~~~~~~l~----Gr~i~V~~a~ 182 (475)
+-|+|++.++..+||++...+|+ .|+|+|+.-.
T Consensus 416 GRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred ceeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 99999999999999998764443 4578877654
No 50
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=1.9e-14 Score=155.30 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=96.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhc--CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAF--GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~--G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.++|||+|||++++|++|+++|++| |+|++|++++ +||||+|+++++|++|| ++..+|.+++|+|.++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4789999999999999999999999 9999998765 49999999999999999 7899999999999999
Q ss_pred CCCcchhcccc------------CCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCc
Q 011912 81 VPRDDQNIQNR------------NNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGI 131 (475)
Q Consensus 81 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~ 131 (475)
+++........ ...............++++.||+++++++-|.++|..+|.
T Consensus 305 kp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~ 367 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGP 367 (578)
T ss_pred cCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcc
Confidence 87654321100 0011111223345789999999999999999999999875
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=4.4e-14 Score=110.02 Aligned_cols=69 Identities=32% Similarity=0.732 Sum_probs=65.3
Q ss_pred eeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEE
Q 011912 108 IFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (475)
Q Consensus 108 LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~ 177 (475)
|||+|||+++|+++|+++|++||.|..+.++.+ .+++.+++|||+|+++++|++|++.++ +.|++++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 668899999999999999999999887 899999885
No 52
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=2.7e-14 Score=139.91 Aligned_cols=85 Identities=21% Similarity=0.523 Sum_probs=77.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011912 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
.....++|+|.|||+...|.||+.+|++||+|++|+|+.+. .-+|||+||+|++.+||++|.++++ ..+.||+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 44567899999999999999999999999999999999874 4689999999999999999999999 89999999999
Q ss_pred EccCCCCC
Q 011912 180 RAVPKELS 187 (475)
Q Consensus 180 ~a~~k~~~ 187 (475)
.|.++-..
T Consensus 170 ~ATarV~n 177 (376)
T KOG0125|consen 170 NATARVHN 177 (376)
T ss_pred ccchhhcc
Confidence 99876443
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=4.8e-14 Score=109.81 Aligned_cols=68 Identities=29% Similarity=0.752 Sum_probs=64.6
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEE
Q 011912 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (475)
Q Consensus 8 LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~ 76 (475)
|||+|||+++++++|+++|++||+|+.++++.+ .+++.+++|||+|+++++|++|+ ++...+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999998 57899999999999999999999 889999999885
No 54
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.51 E-value=4.3e-13 Score=132.41 Aligned_cols=174 Identities=13% Similarity=0.311 Sum_probs=132.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeE--------EEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeE
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLE--------AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRT 74 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~--------v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~ 74 (475)
.+.|||.+||.|+|.+|+.++|++||.|.. |+|.++. .|..||=|+|.|-..++++-|+ ++...+.+++
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 456999999999999999999999997653 7888886 5999999999999999999999 8888999999
Q ss_pred EEEeecCCCcch--hcccc---------------CC-----CCCCCCCCCCCcceeeecCCCCC----CC-------HHH
Q 011912 75 VEAKKAVPRDDQ--NIQNR---------------NN-----SSIHGSPGPARTKKIFVGGLAST----VT-------ESD 121 (475)
Q Consensus 75 v~V~~a~~~~~~--~~~~~---------------~~-----~~~~~~~~~~~~~~LfV~nLp~~----~t-------eed 121 (475)
|+|++|.-...- ....+ .. ............++|.|.||-.. .+ ++|
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 999988432110 00000 00 00011122344678888887432 22 367
Q ss_pred HHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccC
Q 011912 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 122 L~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
|++-+++||+|..|.|.-.+ +.|.+.|.|.+.++|+.||+.|+ ..|.+|+|+...-.-
T Consensus 293 l~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 78889999999999876433 57899999999999999999999 899999999877543
No 55
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=7e-14 Score=132.30 Aligned_cols=83 Identities=23% Similarity=0.429 Sum_probs=79.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011912 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
..+..+|.|.||+.+++|+||+++|.+||.|.+|.|.+|++|+.+||||||+|++.++|.+||+.++ +-++.-.|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3466789999999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred ccCC
Q 011912 181 AVPK 184 (475)
Q Consensus 181 a~~k 184 (475)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.2e-14 Score=132.61 Aligned_cols=80 Identities=24% Similarity=0.462 Sum_probs=77.4
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
|+++|-|.|||.+++|+||++||.+||.|..|.|.+|+.||.+||||||.|.+.++|.+|| ++.+-++.--|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 6788999999999999999999999999999999999999999999999999999999999 89999999999999998
Q ss_pred CC
Q 011912 82 PR 83 (475)
Q Consensus 82 ~~ 83 (475)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 57
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.6e-13 Score=107.75 Aligned_cols=69 Identities=26% Similarity=0.647 Sum_probs=64.4
Q ss_pred eeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEE
Q 011912 108 IFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (475)
Q Consensus 108 LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~ 177 (475)
|||+|||++++++||+++|+.+|.|.++.+..+++ ++.+++|||+|.++++|++|++.++ +.|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999999 899999985
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=9.7e-13 Score=130.30 Aligned_cols=178 Identities=14% Similarity=0.315 Sum_probs=133.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
.-++|||..+.+|.+|+|||..|+.||+|+.|.+.+++.+..+|||+||||.+.+....|| +|...+.++.|+|-++.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 3579999999999999999999999999999999999988999999999999999999999 88889999999998764
Q ss_pred CCcchhccc--------------------------------------------------------------cCC------
Q 011912 82 PRDDQNIQN--------------------------------------------------------------RNN------ 93 (475)
Q Consensus 82 ~~~~~~~~~--------------------------------------------------------------~~~------ 93 (475)
.....-... ...
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence 433100000 000
Q ss_pred ----CC----------------------------------CCC----------------------------CCCCCCcce
Q 011912 94 ----SS----------------------------------IHG----------------------------SPGPARTKK 107 (475)
Q Consensus 94 ----~~----------------------------------~~~----------------------------~~~~~~~~~ 107 (475)
.. ... .......+.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 00 000 001223345
Q ss_pred eeecCC--CCCCC---HHHHHHHHhhcCceeeEEEeecCCCCccc----eEEEEEecCHHHHHHHHHhcC-ceeCCeEEE
Q 011912 108 IFVGGL--ASTVT---ESDFKKYFDQFGIITDVVVMYDHNTQRPR----GFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (475)
Q Consensus 108 LfV~nL--p~~~t---eedL~~~F~~~G~I~~v~I~~d~~tg~~k----G~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~ 177 (475)
|.++|. |.+++ |.||++.+.+||.|.+|.|...+.+.... =--||+|+...++.+|++.++ ..|.||++.
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 666765 44444 35788899999999999998776554221 136999999999999999999 889999887
Q ss_pred EEEc
Q 011912 178 VKRA 181 (475)
Q Consensus 178 V~~a 181 (475)
.+.-
T Consensus 529 AE~Y 532 (544)
T KOG0124|consen 529 AEVY 532 (544)
T ss_pred hhhh
Confidence 6543
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=2.7e-13 Score=131.65 Aligned_cols=78 Identities=17% Similarity=0.340 Sum_probs=72.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
+..++|||+|||++++|+||++||+.||+|++|.|++++. .++||||+|+++++|++|| +++..|.++.|+|.++.
T Consensus 2 ~~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 2 MQVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 4578999999999999999999999999999999999863 5789999999999999999 99999999999999986
Q ss_pred CC
Q 011912 82 PR 83 (475)
Q Consensus 82 ~~ 83 (475)
..
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 54
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=2.6e-13 Score=106.48 Aligned_cols=68 Identities=32% Similarity=0.701 Sum_probs=61.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEE
Q 011912 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (475)
Q Consensus 8 LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~ 76 (475)
|||+|||+++++++|+++|+.++.|+.+.+++++. ++.+++|||+|.++++|++|+ .+++.+++++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 899999999999999999999 555899999885
No 61
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.45 E-value=2.3e-12 Score=129.50 Aligned_cols=170 Identities=16% Similarity=0.244 Sum_probs=131.5
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 5 LGKLFIGGISWD-TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 5 ~~~LfVgnLP~d-~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
.+.|.|.||-++ +|+|-|..+|.-||+|..|+|+..|. --|+|++.|...|+-|+ ++++.|.+++|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 478999999766 79999999999999999999999763 36999999999999999 89999999999999887
Q ss_pred CCcchhccccCCCCC----------C--CC-------CCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCC
Q 011912 82 PRDDQNIQNRNNSSI----------H--GS-------PGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHN 142 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~----------~--~~-------~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~ 142 (475)
....+-.++..++.. + .. -.-+++.+|++.|+|.+++||||+++|.+.|-+++......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-- 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-- 449 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--
Confidence 654333222111100 0 00 01245679999999999999999999998887655443332
Q ss_pred CCccceEEEEEecCHHHHHHHHHhcC-ceeCCe-EEEEEEccC
Q 011912 143 TQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK-MVEVKRAVP 183 (475)
Q Consensus 143 tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr-~i~V~~a~~ 183 (475)
+.+-+|++.+++.|.|..|+..++ |.+... .|+|++.+.
T Consensus 450 --kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 450 --KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 223399999999999999988776 777654 899988754
No 62
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=1.5e-12 Score=121.73 Aligned_cols=159 Identities=13% Similarity=0.258 Sum_probs=110.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEe-cCCCCCcccEEEEEEcCHHHHHHHH--HcCcccC---CeEEEEe
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMK-DRATGRARGFGFIVFADPAVAERVV--MQKHMID---GRTVEAK 78 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~-dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~---gr~v~V~ 78 (475)
-|+|||.+||.|++..||..+|.+|--.+.+.|.. ++....++-+|||.|.+.++|.+|+ ++...++ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 68999999999999999999999987666666544 3333355689999999999999999 7777766 4667776
Q ss_pred ecCCCcchhccccCC---------------CCC----------------------CC-----------------------
Q 011912 79 KAVPRDDQNIQNRNN---------------SSI----------------------HG----------------------- 98 (475)
Q Consensus 79 ~a~~~~~~~~~~~~~---------------~~~----------------------~~----------------------- 98 (475)
.++........+... ... ..
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 654322111100000 000 00
Q ss_pred ----------CCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc
Q 011912 99 ----------SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (475)
Q Consensus 99 ----------~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~ 167 (475)
......+.+|||.||-.+|||++||++|+.|--...++|... .+. ..|||+|++.+.|..|+..+
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecHHHHHHHHHHHHHh
Confidence 001122458999999999999999999999976666665422 122 37899998888888888443
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.44 E-value=2.1e-12 Score=130.46 Aligned_cols=73 Identities=16% Similarity=0.288 Sum_probs=66.2
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
+.++|||+|||.++||+.||+.|.+||.|+.++|+ +.+++|| .|.|.++++|++|+..++ ..|+||.|+|.++
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 34689999999999999999999999999999995 3477776 899999999999999999 8999999999863
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.44 E-value=6.5e-13 Score=129.02 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=71.0
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccCC
Q 011912 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~k 184 (475)
.++|||+|||+.+||+||+++|+.||.|++|+|+.|++ .++||||+|+++++|++||.+.+..|.++.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998864 468999999999999999975559999999999998754
Q ss_pred C
Q 011912 185 E 185 (475)
Q Consensus 185 ~ 185 (475)
+
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 65
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=9.7e-13 Score=138.14 Aligned_cols=179 Identities=18% Similarity=0.352 Sum_probs=136.1
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|||++||..+++++++|+++.||++....++++..++.+++|||.+|.++.....|+ ++...+..++|.|..|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 4579999999999999999999999999999999999989999999999999999999999 88888989999999887
Q ss_pred CCcchhccccCCCC--C---CC---CCCCCCcceeeecCCCC--C-CCH-------HHHHHHHhhcCceeeEEEeec---
Q 011912 82 PRDDQNIQNRNNSS--I---HG---SPGPARTKKIFVGGLAS--T-VTE-------SDFKKYFDQFGIITDVVVMYD--- 140 (475)
Q Consensus 82 ~~~~~~~~~~~~~~--~---~~---~~~~~~~~~LfV~nLp~--~-~te-------edL~~~F~~~G~I~~v~I~~d--- 140 (475)
..........+... . .. .....+++.|.+.|+=. + ..+ |+|+..+.+||.|..|.|.++
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 65544333333000 0 00 11122333333333211 1 122 445566668999999999887
Q ss_pred CCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011912 141 HNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 141 ~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
.+.....|..||||.+.+++++|++.|. .+|.+|.|...+-.
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 2334556778999999999999999999 89999999888754
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.9e-13 Score=115.67 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=76.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...++|||+||...++||+|.++|+++|+|..|.+-.|+.+..+.|||||+|-+.++|+.|++.++ +.|+.+.|.|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 346899999999999999999999999999999999999999999999999999999999999998 8999999999987
Q ss_pred cC
Q 011912 182 VP 183 (475)
Q Consensus 182 ~~ 183 (475)
--
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 44
No 67
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=2.8e-13 Score=138.45 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=70.5
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCH--HHHHHHH--HcCcccCCeEEEEee
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP--AVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~--e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
...+|||+||+++++++||+.+|.+||.|.+|.|++ .++ ||||||+|.+. +++++|| +++..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 356999999999999999999999999999999995 466 89999999987 7899999 999999999999999
Q ss_pred cCCCc
Q 011912 80 AVPRD 84 (475)
Q Consensus 80 a~~~~ 84 (475)
|++.-
T Consensus 85 AKP~Y 89 (759)
T PLN03213 85 AKEHY 89 (759)
T ss_pred ccHHH
Confidence 98764
No 68
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.41 E-value=3.2e-13 Score=124.89 Aligned_cols=84 Identities=21% Similarity=0.397 Sum_probs=78.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011912 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
....+..|.|-||.+.++.++|+.+|++||.|.+|.|+.|+.|..++|||||.|.+..+|+.|++.|+ ..|+|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EccCC
Q 011912 180 RAVPK 184 (475)
Q Consensus 180 ~a~~k 184 (475)
+|+--
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 98643
No 69
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=2.6e-12 Score=123.10 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=73.3
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEee
Q 011912 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~ 79 (475)
|..+-.+|||+||++++||++|++||+.||+|++|+|++|+ +.++||||+|+++++|+.|| +++..|.+++|.|..
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 56777899999999999999999999999999999999984 45679999999999999999 999999999999988
Q ss_pred cCCC
Q 011912 80 AVPR 83 (475)
Q Consensus 80 a~~~ 83 (475)
+...
T Consensus 78 ~~~y 81 (243)
T PLN03121 78 WGQY 81 (243)
T ss_pred Cccc
Confidence 7643
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=7.7e-13 Score=119.62 Aligned_cols=75 Identities=23% Similarity=0.452 Sum_probs=69.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
.++|||+||+.++++.||+.+|..||+|..|+|.+.+ .|||||||+++.+|++|+ |+...|++..|.|+.+.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 6899999999999999999999999999999999864 589999999999999999 999999999999988765
Q ss_pred Cc
Q 011912 83 RD 84 (475)
Q Consensus 83 ~~ 84 (475)
+.
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 44
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=7.5e-13 Score=113.92 Aligned_cols=80 Identities=19% Similarity=0.373 Sum_probs=75.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
+++++|||+||+.-++||+|.+||+++|+|..|.+=.|+.+.++=|||||+|.+.++|+.|| .+...++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999999999989999999999999999999999 8899999999999886
Q ss_pred CC
Q 011912 81 VP 82 (475)
Q Consensus 81 ~~ 82 (475)
.-
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 43
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=3.5e-12 Score=98.16 Aligned_cols=71 Identities=35% Similarity=0.662 Sum_probs=66.2
Q ss_pred eeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011912 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 107 ~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
+|+|.+||..+++++|+++|++||.|.++.++.++ +.++++|||+|.+.++|++|++.++ +.|.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6788999999999999999999988 89999999874
No 73
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.36 E-value=3e-12 Score=123.25 Aligned_cols=79 Identities=35% Similarity=0.698 Sum_probs=76.2
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccC
Q 011912 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
.++|||+|||+.+|+++|+++|.+||.|..|.|+.|+.+++++|+|||+|.++++|..|++.++ ..|.+++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999999999899999999999999999999999999 899999999999654
No 74
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.2e-12 Score=97.25 Aligned_cols=70 Identities=37% Similarity=0.698 Sum_probs=65.9
Q ss_pred ecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011912 110 VGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 110 V~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
|.+||..+++++|+++|++||.|.++.|..++.+.+++++|||+|.+.++|++|++.++ ..+++++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988888999999999999999999999998 89999999874
No 75
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.6e-12 Score=124.76 Aligned_cols=80 Identities=24% Similarity=0.494 Sum_probs=74.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
..-+||||.-|+.+++|.+|++.|+.||+|+.|.|++|+.|++++|||||||+++.+..+|. .+.++|+++.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999 7889999999999765
Q ss_pred CC
Q 011912 81 VP 82 (475)
Q Consensus 81 ~~ 82 (475)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 76
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=6.2e-12 Score=127.74 Aligned_cols=119 Identities=21% Similarity=0.393 Sum_probs=91.6
Q ss_pred EcCHHHHHHHHHcCcccCCeEEEEeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCcee
Q 011912 54 FADPAVAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIIT 133 (475)
Q Consensus 54 F~s~e~A~~Al~~~~~i~gr~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~ 133 (475)
..+.|+|.++|+.. .+..|+|+....+..-.... ...+.+..-+.|||+.||.++.|+||..+|++.|+|-
T Consensus 41 ~~~~eaal~al~E~---tgy~l~ve~gqrk~ggPpP~------weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~ 111 (506)
T KOG0117|consen 41 VQSEEAALKALLER---TGYTLVVENGQRKYGGPPPG------WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIY 111 (506)
T ss_pred cccHHHHHHHHHHh---cCceEEEeccccccCCCCCc------ccCCCCCCCceEEecCCCccccchhhHHHHHhcccee
Confidence 34467777777433 35677776654333221111 2223346778999999999999999999999999999
Q ss_pred eEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-cee-CCeEEEEEEc
Q 011912 134 DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL-NGKMVEVKRA 181 (475)
Q Consensus 134 ~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l-~Gr~i~V~~a 181 (475)
+++|++|+.++.+||||||+|.+.++|++||+.+| ++| .||.|.|...
T Consensus 112 elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 112 ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 99999999999999999999999999999999998 777 5777776543
No 77
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9.2e-13 Score=122.79 Aligned_cols=89 Identities=31% Similarity=0.583 Sum_probs=82.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
.+.++|||++|..+|+|.-|...|-+||.|++|.|+.|.++++.|+|+||+|+..|+|.+||..|+ .+|.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 456899999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred cCCCCCCCCC
Q 011912 182 VPKELSPGPS 191 (475)
Q Consensus 182 ~~k~~~~~~~ 191 (475)
+|...+....
T Consensus 88 kP~kikegsq 97 (298)
T KOG0111|consen 88 KPEKIKEGSQ 97 (298)
T ss_pred CCccccCCCC
Confidence 9976655433
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=6.2e-12 Score=96.72 Aligned_cols=70 Identities=30% Similarity=0.657 Sum_probs=64.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011912 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 7 ~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
+|||.+||.++++++|+++|++||+|.++.+++++ +.++++|||+|.++++|++|+ +++..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 678899999999999999999 67788889988873
No 79
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2.9e-12 Score=115.95 Aligned_cols=77 Identities=21% Similarity=0.493 Sum_probs=70.2
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
..++|||+||+..+++.||+.+|.+||.|..|.|... +.|||||||+++.+|+.|+..|+ ++|+|..|+|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999998754 56899999999999999999999 99999999999885
Q ss_pred CCC
Q 011912 183 PKE 185 (475)
Q Consensus 183 ~k~ 185 (475)
-+.
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 543
No 80
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=3.9e-12 Score=126.81 Aligned_cols=179 Identities=18% Similarity=0.272 Sum_probs=130.6
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.++..|-.+.|||..++.+|..||+-.-.+.-...+.....++..+++.|.|.|+|.-+-|+ ++++.+..|.|+|-++.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 45667888999999999999999987643333334444456777899999999999999999 88899999999999887
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhc---C-ceeeEEEeecCCCCccceEEEEEecCH
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQF---G-IITDVVVMYDHNTQRPRGFGFITYDSE 157 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~---G-~I~~v~I~~d~~tg~~kG~aFV~F~s~ 157 (475)
..+-.....-.......-......-.|.+++||+++++.|+.++|.+. . .++.|.+++.+ .+++.|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCH
Confidence 655332221111111111111223456789999999999999999632 2 33445444443 489999999999999
Q ss_pred HHHHHHHHhcCceeCCeEEEEEEcc
Q 011912 158 EAVDKVLLKTFHELNGKMVEVKRAV 182 (475)
Q Consensus 158 e~A~~Al~~~~~~l~Gr~i~V~~a~ 182 (475)
++|+.||.++...|.-|.|++.+..
T Consensus 217 e~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 217 EDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999999998878888888876544
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=4.7e-12 Score=129.62 Aligned_cols=77 Identities=21% Similarity=0.420 Sum_probs=71.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCH--HHHHHHHHhcC-ceeCCeEEEEE
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSE--EAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~--e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
....+|||+||++.+|++||+++|.+||.|.+|.|+ ++++ ||||||+|.+. +++++||+.++ .+|.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 456799999999999999999999999999999999 4456 89999999987 78999999999 89999999999
Q ss_pred EccC
Q 011912 180 RAVP 183 (475)
Q Consensus 180 ~a~~ 183 (475)
.|+|
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 9987
No 82
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=1e-11 Score=95.12 Aligned_cols=69 Identities=30% Similarity=0.700 Sum_probs=63.6
Q ss_pred EcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011912 10 IGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 10 VgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
|.+||+++++++|+++|++||+|+++.|.+++.+++++++|||+|.+.++|++|+ +++..+.+++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999999998878899999999999999999999 66688888888773
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.4e-11 Score=118.05 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=70.8
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccC
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~ 183 (475)
...+|||.||++.+||+||+++|+.||+|++|+|++|.+ .+++|||+|+++++|+.||.+.+.+|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 347899999999999999999999999999999999854 45799999999999999998777999999999998754
Q ss_pred CC
Q 011912 184 KE 185 (475)
Q Consensus 184 k~ 185 (475)
..
T Consensus 81 y~ 82 (243)
T PLN03121 81 YE 82 (243)
T ss_pred cc
Confidence 33
No 84
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.30 E-value=2.5e-12 Score=134.20 Aligned_cols=80 Identities=33% Similarity=0.652 Sum_probs=76.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCCC
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~~ 83 (475)
+.|||+|||++++||+|.++|+..|+|.+++++.|+.||+.|||+|++|++.++|++|+ ++..++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999 8889999999999998665
Q ss_pred cc
Q 011912 84 DD 85 (475)
Q Consensus 84 ~~ 85 (475)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 85
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=2.3e-11 Score=94.03 Aligned_cols=73 Identities=34% Similarity=0.686 Sum_probs=67.5
Q ss_pred eeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011912 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 107 ~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
+|+|.+||..+++++|+++|+.+|.|.++.+..++.+ +++++|||+|.+.++|+.|++.++ ..+++++|+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988765 778999999999999999999999 679999999863
No 86
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=5.6e-12 Score=123.77 Aligned_cols=80 Identities=29% Similarity=0.607 Sum_probs=73.5
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
..++|+|.|||+..-|.||+..|++||+|.+|.|+.+. .-+|||+||.|+++++|++|- ++...|.||+|||..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 35799999999999999999999999999999999863 458999999999999999999 89999999999999998
Q ss_pred CCcc
Q 011912 82 PRDD 85 (475)
Q Consensus 82 ~~~~ 85 (475)
.+..
T Consensus 173 arV~ 176 (376)
T KOG0125|consen 173 ARVH 176 (376)
T ss_pred hhhc
Confidence 7743
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.29 E-value=7.1e-12 Score=126.02 Aligned_cols=170 Identities=14% Similarity=0.281 Sum_probs=121.6
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH----HcCcccCCeEEEE
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV----MQKHMIDGRTVEA 77 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al----~~~~~i~gr~v~V 77 (475)
...++.|.++||||+++|+||.+++.+||+|+.+.+++-+. -|||||+|++.|...+ .-...+.+++|.|
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 34678999999999999999999999999999999988653 6999999999998865 2344566788888
Q ss_pred eecCCCcchhccccC---------------CC-----C--C--CCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCcee
Q 011912 78 KKAVPRDDQNIQNRN---------------NS-----S--I--HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIIT 133 (475)
Q Consensus 78 ~~a~~~~~~~~~~~~---------------~~-----~--~--~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~ 133 (475)
.++..+......... .. . . -....+...-+++|.++-+.++-+-|.++|++||.|.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 765433211111000 00 0 0 0112233456788999999999999999999999998
Q ss_pred eEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC-C-eEEEEEEc
Q 011912 134 DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN-G-KMVEVKRA 181 (475)
Q Consensus 134 ~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~-G-r~i~V~~a 181 (475)
+|.-... +.+- -|+|+|.+++.|..|...++ ..|- | ..|+|.+.
T Consensus 179 KIiTF~K-nn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 179 KIITFTK-NNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEEec-ccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 8755432 2221 48999999999999998887 4443 3 24444443
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=8e-12 Score=131.28 Aligned_cols=180 Identities=22% Similarity=0.403 Sum_probs=143.6
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhc-----------C-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCc
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAF-----------G-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKH 68 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~-----------G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~ 68 (475)
..+.++++|.+||..++|+.+..||..- | +|+.+.|-.+ +.||||+|.+.++|..|+ ++..
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhcccch
Confidence 4567899999999999999999999763 2 2555555444 369999999999999999 7888
Q ss_pred ccCCeEEEEeecCCCcchhccccC-------CCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecC
Q 011912 69 MIDGRTVEAKKAVPRDDQNIQNRN-------NSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH 141 (475)
Q Consensus 69 ~i~gr~v~V~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~ 141 (475)
.+.++++++............... .............++|||.+||..+++.+++|+++.||.+....++.|.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 888999888765443322111100 1111122234567899999999999999999999999999999999999
Q ss_pred CCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCCCCC
Q 011912 142 NTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 142 ~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
.++.+|+|||.+|.+....+.|++.+| ..+.+++|.|..|.+....
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 999999999999999999999999999 8999999999998775443
No 89
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.9e-11 Score=111.49 Aligned_cols=78 Identities=17% Similarity=0.422 Sum_probs=69.5
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
..++|||+|||.++.|.||+++|.+||.|++|.+... ..+..||||+|+++.+|+.||...+ .++++.+|.|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4578999999999999999999999999999988543 3456799999999999999999888 89999999999985
Q ss_pred CC
Q 011912 183 PK 184 (475)
Q Consensus 183 ~k 184 (475)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 43
No 90
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.27 E-value=6.3e-12 Score=116.37 Aligned_cols=78 Identities=32% Similarity=0.566 Sum_probs=74.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
....|.|-||.+.++.++|+.+|++||.|.+|.|.+|+.|..++|||||.|.++.+|++|+ ++..+++++.|.|..|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4678999999999999999999999999999999999999999999999999999999999 99999999999998774
No 91
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=7.7e-12 Score=113.85 Aligned_cols=80 Identities=26% Similarity=0.446 Sum_probs=77.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
.+..+|||+||+..++++.|.++|-+.|+|+++.|++|+.++..+|||||||.++|+|+-|++.++ .+|-||+|+|.++
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 566899999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred c
Q 011912 182 V 182 (475)
Q Consensus 182 ~ 182 (475)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 92
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=2.1e-11 Score=105.93 Aligned_cols=84 Identities=24% Similarity=0.369 Sum_probs=78.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
..-.|||.+++..+||+||.+.|..||+|+.|.+-.|+.|+..||||+|+|++.+.|++|++.+| .+|.+..|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 34579999999999999999999999999999999999999999999999999999999999999 89999999999986
Q ss_pred CCCCC
Q 011912 183 PKELS 187 (475)
Q Consensus 183 ~k~~~ 187 (475)
.+...
T Consensus 151 v~gp~ 155 (170)
T KOG0130|consen 151 VKGPE 155 (170)
T ss_pred ecCCc
Confidence 65543
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=6.6e-11 Score=91.45 Aligned_cols=72 Identities=32% Similarity=0.665 Sum_probs=65.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011912 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 7 ~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+|+|.+||+++++++|+++|+.+|+|..+.+.+++.+ +.+++|||+|.++++|+.|+ ++...+.+++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999998754 77899999999999999999 667778899988863
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=4.6e-11 Score=99.42 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=73.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011912 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
++..++.|||+|||+++|.|++-++|.+||.|.+|+|-.+++| +|.|||.|++..+|++|++.+. ..+.++.|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 3456788999999999999999999999999999999877664 8899999999999999999999 89999999998
Q ss_pred EccCC
Q 011912 180 RAVPK 184 (475)
Q Consensus 180 ~a~~k 184 (475)
.-.+.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 76553
No 95
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=1.8e-12 Score=117.74 Aligned_cols=79 Identities=24% Similarity=0.577 Sum_probs=74.2
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.|+--|||++||++.||.||.-.|++||+|++|.+++|+.||+++||||+.|++..+..-|+ +++..|.+|.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35678999999999999999999999999999999999999999999999999999998888 9999999999999865
Q ss_pred C
Q 011912 81 V 81 (475)
Q Consensus 81 ~ 81 (475)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.1e-11 Score=115.57 Aligned_cols=86 Identities=28% Similarity=0.507 Sum_probs=80.6
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011912 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
|..+.++|||++|-.+++|.-|...|-+||.|++|.|..|-.+.++|+|+||+|...|+|.+|| ++..++.+|.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred ecCCCcch
Q 011912 79 KAVPRDDQ 86 (475)
Q Consensus 79 ~a~~~~~~ 86 (475)
.|+|.+..
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99876543
No 97
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.21 E-value=1.1e-11 Score=124.45 Aligned_cols=89 Identities=47% Similarity=0.772 Sum_probs=83.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccC
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~ 183 (475)
..++|||++|+|+++||.|++.|.+||+|.+|.|++|+.++++|+|+||+|++++.+.++|....|+|+++.|++++|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56899999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCCCCCC
Q 011912 184 KELSPGPSR 192 (475)
Q Consensus 184 k~~~~~~~r 192 (475)
++......+
T Consensus 85 r~~~~~~~~ 93 (311)
T KOG4205|consen 85 REDQTKVGR 93 (311)
T ss_pred ccccccccc
Confidence 887665543
No 98
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=2.3e-12 Score=117.08 Aligned_cols=78 Identities=26% Similarity=0.517 Sum_probs=74.0
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
...-|||++||+++||-||..+|++||+|++|.+++|+.|++++||||+.|++..+..-|+..+| ..|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34569999999999999999999999999999999999999999999999999999999999988 8999999999875
No 99
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=8.4e-11 Score=97.85 Aligned_cols=78 Identities=21% Similarity=0.380 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
.+.|||+|||+++|.||+.++|.+||+|.+|+|=.++. .+|-|||+|++..+|++|+ ++...++++.+.|-...+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 57899999999999999999999999999999988764 4799999999999999999 888999999999988765
Q ss_pred Ccc
Q 011912 83 RDD 85 (475)
Q Consensus 83 ~~~ 85 (475)
...
T Consensus 95 ~~~ 97 (124)
T KOG0114|consen 95 EDA 97 (124)
T ss_pred HHH
Confidence 443
No 100
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.18 E-value=1.8e-10 Score=119.85 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=71.6
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccCCC
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~k~ 185 (475)
.+|||+|||.++++++|+++|.+||.|++..|......++...|+||+|++.++++.||++....|++++|.|+..++..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccc
Confidence 45999999999999999999999999999988765433444489999999999999999999889999999999987755
Q ss_pred CC
Q 011912 186 LS 187 (475)
Q Consensus 186 ~~ 187 (475)
..
T Consensus 369 ~g 370 (419)
T KOG0116|consen 369 RG 370 (419)
T ss_pred cc
Confidence 43
No 101
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=4.3e-11 Score=103.99 Aligned_cols=81 Identities=19% Similarity=0.379 Sum_probs=76.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
-..|||.++.+.+||++|.+.|..||+|+.|.|-.|+.|+..||||+|+|++.++|++|| +|...|.++.|.|.|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 357999999999999999999999999999999999999999999999999999999999 888999999999999976
Q ss_pred Ccc
Q 011912 83 RDD 85 (475)
Q Consensus 83 ~~~ 85 (475)
+.+
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 543
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.16 E-value=5.7e-11 Score=124.11 Aligned_cols=81 Identities=26% Similarity=0.541 Sum_probs=77.6
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCC
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k 184 (475)
+.|||+|||++++||+|.++|++.|.|..++++.|++|+++|||+||+|.+++++++|++.++ .++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 889999999999999999999999999999999999999999999999999999999999999 9999999999998654
Q ss_pred CC
Q 011912 185 EL 186 (475)
Q Consensus 185 ~~ 186 (475)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.16 E-value=2.7e-09 Score=106.54 Aligned_cols=162 Identities=14% Similarity=0.186 Sum_probs=124.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH----HcCcccCCeEEEEeec
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV----MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al----~~~~~i~gr~v~V~~a 80 (475)
+-.|.|++|-..++|.||.+.++.||+|..|.+|..+ ..|.|||++.+.|++++ .+...+.++.-.+.++
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 4579999999999999999999999999988887754 36999999999999999 4455677777777666
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceee--ecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHH
Q 011912 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIF--VGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lf--V~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e 158 (475)
..+...+.. .......+.|. |-|--+.+|-+-|..++..+|+|.+|.|++. ++. -|.|||++.+
T Consensus 105 tsq~i~R~g---------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~ 170 (494)
T KOG1456|consen 105 TSQCIERPG---------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVE 170 (494)
T ss_pred hhhhhccCC---------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhH
Confidence 443332221 11112333443 4566667999999999999999999999865 233 5999999999
Q ss_pred HHHHHHHhcC-ceeC-C-eEEEEEEccCCCC
Q 011912 159 AVDKVLLKTF-HELN-G-KMVEVKRAVPKEL 186 (475)
Q Consensus 159 ~A~~Al~~~~-~~l~-G-r~i~V~~a~~k~~ 186 (475)
.|++|.+.+| .+|- | ..|+|++|+|.+.
T Consensus 171 ~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 171 VAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred HHHHHHhhcccccccccceeEEEEecCccee
Confidence 9999999998 5443 3 5889999988543
No 104
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.14 E-value=5.5e-11 Score=115.20 Aligned_cols=71 Identities=23% Similarity=0.542 Sum_probs=67.2
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCC
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k 184 (475)
.+|||+|||..+++.+|+.+|++||+|++|+|+++ |+||+.++..+++.||..|+ .+|+|..|.|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999965 99999999999999999887 7999999999998877
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.13 E-value=1.7e-09 Score=108.02 Aligned_cols=163 Identities=18% Similarity=0.222 Sum_probs=124.0
Q ss_pred cCcEEEEcCCCCC-CcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 4 ELGKLFIGGISWD-TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 4 d~~~LfVgnLP~d-~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
+.+.++|-+|..+ ++-+.|..+|..||.|+.|++|+.+. +-|+||+.|..+.++|| +++..+.+.+|.|..+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 4578999999887 68899999999999999999999863 67999999999999999 8888999999999876
Q ss_pred CCCcchhccc----------------cC-CC----CCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCc-eeeEEEe
Q 011912 81 VPRDDQNIQN----------------RN-NS----SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGI-ITDVVVM 138 (475)
Q Consensus 81 ~~~~~~~~~~----------------~~-~~----~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~-I~~v~I~ 138 (475)
+.....+.+. ++ .. .........+++.|+.-|.|..+|||+|.++|....+ .+.|+|.
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvF 440 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVF 440 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEee
Confidence 5432111100 00 00 0001112356788999999999999999999977654 3566666
Q ss_pred ecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCC
Q 011912 139 YDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG 173 (475)
Q Consensus 139 ~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~G 173 (475)
.-+. .+ .-.+++||++.++|..||.++| ..|++
T Consensus 441 p~ks-er-SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 441 PLKS-ER-SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred cccc-cc-cccceeeeehHHHHHHHHHHhccccccC
Confidence 5553 33 3368999999999999999999 45655
No 106
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.11 E-value=1e-10 Score=116.81 Aligned_cols=178 Identities=19% Similarity=0.263 Sum_probs=141.9
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcC-cccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQK-HMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~-~~i~gr~v~V~~a~ 81 (475)
..+++|++++.+.+.+.++..++...|.+..+.+........+++++.|.|+.++.+..|| +.. ..+..+.++.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4678999999999999999999999998888887776667889999999999999999999 444 35566666555443
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceee-ecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHH
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIF-VGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~Lf-V~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A 160 (475)
....+.... ..........++| |.+|+..+++++|+.+|..++.|+.++++.++.++..++|++|+|.+.+..
T Consensus 167 ~~~~~~~n~------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 167 RRGLRPKNK------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred cccccccch------hcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 333111000 0001112334555 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceeCCeEEEEEEccCCCCC
Q 011912 161 DKVLLKTFHELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 161 ~~Al~~~~~~l~Gr~i~V~~a~~k~~~ 187 (475)
.+++....+.+.++.+.|.+..++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 241 KLALNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred HHHhhcccCcccCcccccccCCCCccc
Confidence 999987338899999999998876544
No 107
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=4.2e-12 Score=137.59 Aligned_cols=152 Identities=19% Similarity=0.288 Sum_probs=128.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
++.+++||.||+..+.++||.+.|..++.|+.+.|...+.+++.||.|+|+|.+++++.+|| .+...+.+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 45678999999999999999999999988777776655567899999999999999999999 33332222
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
..+|+|+|+|+..|.++|+.+|.++|.++++.++..+. ++++|.|+|.|.++.++.
T Consensus 736 -----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s 791 (881)
T KOG0128|consen 736 -----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADAS 791 (881)
T ss_pred -----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhh
Confidence 24699999999999999999999999999998777765 899999999999999999
Q ss_pred HHHHhcC-ceeCCeEEEEEEccCCCCC
Q 011912 162 KVLLKTF-HELNGKMVEVKRAVPKELS 187 (475)
Q Consensus 162 ~Al~~~~-~~l~Gr~i~V~~a~~k~~~ 187 (475)
+++.+.. ..++-+.++|....|...+
T Consensus 792 ~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 792 RKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred hhcccchhhhhhhcCccccccCCcccc
Confidence 9998877 6777778888876664433
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=3.8e-10 Score=89.14 Aligned_cols=60 Identities=22% Similarity=0.489 Sum_probs=54.6
Q ss_pred HHHHHHHHh----hcCceeeEE-EeecCCC--CccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEE
Q 011912 119 ESDFKKYFD----QFGIITDVV-VMYDHNT--QRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (475)
Q Consensus 119 eedL~~~F~----~~G~I~~v~-I~~d~~t--g~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V 178 (475)
++||+++|+ +||.|.+|. |+.++.+ +++||++||+|+++++|.+|++.++ +.|.++.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999995 7777766 8899999999999999999999998 8999999987
No 109
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=3e-11 Score=112.86 Aligned_cols=133 Identities=23% Similarity=0.296 Sum_probs=111.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
..+++|||.||...++|+-|.|+|-+-|+|..|.|..++ +.+.| ||||+|+++-...-|+ ++...+.++.+.|+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~-- 82 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT-- 82 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc--
Confidence 346899999999999999999999999999999999886 66777 9999999999999998 67777766666554
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecC----CCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecC
Q 011912 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGG----LASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~n----Lp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s 156 (475)
++.++ |...+++|.+.+.|+.-+.|..++|..+.+ ++++-+.||++..
T Consensus 83 ---------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr 134 (267)
T KOG4454|consen 83 ---------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQR 134 (267)
T ss_pred ---------------------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhh
Confidence 23333 667799999999999999999999998876 8889999999877
Q ss_pred HHHHHHHHHhc
Q 011912 157 EEAVDKVLLKT 167 (475)
Q Consensus 157 ~e~A~~Al~~~ 167 (475)
..+.-.++...
T Consensus 135 ~~~~P~~~~~y 145 (267)
T KOG4454|consen 135 LCAVPFALDLY 145 (267)
T ss_pred hhcCcHHhhhh
Confidence 77666666544
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.03 E-value=9.8e-10 Score=82.65 Aligned_cols=55 Identities=27% Similarity=0.561 Sum_probs=49.4
Q ss_pred HHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 122 L~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
|+++|++||+|+++.+..++ +++|||+|++.++|++|++.++ ..|.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998664 5699999999999999999988 8999999999985
No 111
>smart00361 RRM_1 RNA recognition motif.
Probab=99.01 E-value=1.2e-09 Score=86.27 Aligned_cols=60 Identities=32% Similarity=0.494 Sum_probs=53.6
Q ss_pred cHHHHHHHHh----hcCCeeEEE-EEecCCC--CCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEE
Q 011912 18 NEDRLRDYFQ----AFGEVLEAV-IMKDRAT--GRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (475)
Q Consensus 18 teedLke~F~----~~G~V~~v~-i~~dk~t--G~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V 77 (475)
.+++|+++|+ +||+|.+|. |+.++.+ ++++||+||+|.+.++|.+|+ +++..+.+|.|.+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3688999998 999999996 7776656 899999999999999999999 8999999999976
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.7e-10 Score=111.17 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=76.1
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
...++.|||+.|.+-++++||.-+|+.||+|+.|.|++|+.|+.+.-||||||.+++++++|. +++..|+.+.|.|..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 345789999999999999999999999999999999999999999999999999999999999 899999999999987
Q ss_pred cCC
Q 011912 80 AVP 82 (475)
Q Consensus 80 a~~ 82 (475)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 643
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.00 E-value=6.9e-10 Score=119.36 Aligned_cols=108 Identities=19% Similarity=0.334 Sum_probs=87.8
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
-++||||+.|++.++|.||+++|++||+|++|+++.. |+||||++...++|++|+ ++++.+..+.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3689999999999999999999999999999999885 589999999999999999 88999999999999998
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhh
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQ 128 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~ 128 (475)
.+-.+..-+. --...|=|.-|||+.-.+||+.+++.
T Consensus 494 g~G~kse~k~-----------~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 494 GKGPKSEYKD-----------YWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred cCCcchhhhh-----------hhhcccCeeEeehHhcCHHHHHhhhh
Confidence 7654431110 11233556678888666667777763
No 114
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.92 E-value=4.7e-09 Score=78.91 Aligned_cols=54 Identities=33% Similarity=0.624 Sum_probs=48.8
Q ss_pred HHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 22 LRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 22 Lke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
|+++|++||+|++|.+.+++ +++|||+|.+.++|++|+ +++..+.+++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998864 589999999999999999 8999999999999875
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.8e-09 Score=107.07 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=77.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011912 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
..++.+.|||-.|.+-+|+|||+-+|+.||+|+.|.|++|+.|+.+--||||+|++.+++++|.-+|. ..|++++|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 79999999998
Q ss_pred EccC
Q 011912 180 RAVP 183 (475)
Q Consensus 180 ~a~~ 183 (475)
+...
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8654
No 116
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.86 E-value=6e-09 Score=112.27 Aligned_cols=81 Identities=28% Similarity=0.534 Sum_probs=72.6
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011912 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....+||||+.|+..++|+||+.+|++||+|..|.++. ++++|||++...++|.+||.++. +.+..+.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 34568999999999999999999999999999998864 46799999999999999999998 899999999999
Q ss_pred ccCCCCCC
Q 011912 181 AVPKELSP 188 (475)
Q Consensus 181 a~~k~~~~ 188 (475)
|.-+-.+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 98765544
No 117
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.84 E-value=1.7e-09 Score=103.21 Aligned_cols=168 Identities=17% Similarity=0.298 Sum_probs=125.7
Q ss_pred EEEEcCCCCCCcHHH-H--HHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecC
Q 011912 7 KLFIGGISWDTNEDR-L--RDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 7 ~LfVgnLP~d~teed-L--ke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~ 81 (475)
.+|+.++-.++..+- | ...|+.+-.+...++++++ .+.-++++|+.|+..+.-.++- .+++.|..++|++....
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 345555555554443 3 5677777777777788775 4567789999999888777776 44555555555443332
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHH
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~ 161 (475)
.-++.. ....+....+||++.|--+++++.|.+.|.+|-.....++++|+.|++++||+||.|.+.+++.
T Consensus 177 swedPs----------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 177 SWEDPS----------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred ccCCcc----------cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 221111 1113456789999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHhcC-ceeCCeEEEEEEccCCC
Q 011912 162 KVLLKTF-HELNGKMVEVKRAVPKE 185 (475)
Q Consensus 162 ~Al~~~~-~~l~Gr~i~V~~a~~k~ 185 (475)
.|+..++ +.++.|.|++....-++
T Consensus 247 rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHhhcccccccchhHhhhhhHHh
Confidence 9999998 88888888887655443
No 118
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=3.1e-09 Score=102.01 Aligned_cols=83 Identities=29% Similarity=0.508 Sum_probs=77.1
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.|-|+|||-.||.+..+.||.+.|-.||.|++.+|+.|+.|+.+|-|+||.|.++.+|++|| +|...|.-|+|+|...
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 46799999999999999999999999999999999999999999999999999999999999 8999998899988776
Q ss_pred CCCcc
Q 011912 81 VPRDD 85 (475)
Q Consensus 81 ~~~~~ 85 (475)
+++.+
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 66543
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=1.9e-08 Score=99.97 Aligned_cols=81 Identities=31% Similarity=0.592 Sum_probs=71.2
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC--ceeCCeEE
Q 011912 99 SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF--HELNGKMV 176 (475)
Q Consensus 99 ~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~--~~l~Gr~i 176 (475)
+++...-++|||++|-..++|.||+++|.+||+|..|+|+..+ ++|||+|.+.++|+.|.++.. ..|+|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3445556799999999999999999999999999999998653 499999999999999999876 68999999
Q ss_pred EEEEccCCC
Q 011912 177 EVKRAVPKE 185 (475)
Q Consensus 177 ~V~~a~~k~ 185 (475)
+|.|..+++
T Consensus 296 ~i~Wg~~~~ 304 (377)
T KOG0153|consen 296 KIKWGRPKQ 304 (377)
T ss_pred EEEeCCCcc
Confidence 999998833
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.81 E-value=9.1e-09 Score=109.54 Aligned_cols=176 Identities=10% Similarity=0.013 Sum_probs=127.6
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecC
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~ 81 (475)
.|.+.|-+...+++.++.|+++||... .|..+.|.+++......|-++|+|...+++++|+ .+...+-.|.|+|..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 567888899999999999999999864 3556666666555555799999999999999999 66666778888887654
Q ss_pred CCcchhc-----ccc--CCCCCC----------------CCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceee-EEE
Q 011912 82 PRDDQNI-----QNR--NNSSIH----------------GSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITD-VVV 137 (475)
Q Consensus 82 ~~~~~~~-----~~~--~~~~~~----------------~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~-v~I 137 (475)
....... ... .....+ .........+|||..||..+++.++.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 3321110 000 000000 0012234578999999999999999999998888888 444
Q ss_pred eecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011912 138 MYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 138 ~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
.+- .+.+.++.|||+|..++++.+|+.... +.+..|.|+|.-
T Consensus 468 t~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 468 TRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccC-CcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 444 457888999999999777777766554 677888888854
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=3.4e-08 Score=98.20 Aligned_cols=74 Identities=28% Similarity=0.551 Sum_probs=68.5
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH---HcCcccCCeEEEEee
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV---MQKHMIDGRTVEAKK 79 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al---~~~~~i~gr~v~V~~ 79 (475)
...++|||++|-..++|.+|+++|.+||+|+.|.++..+ ++|||+|.+.+.|++|. .++..|++++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 456799999998899999999999999999999998864 59999999999999999 678899999999999
Q ss_pred cCC
Q 011912 80 AVP 82 (475)
Q Consensus 80 a~~ 82 (475)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 988
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=5.5e-09 Score=114.19 Aligned_cols=160 Identities=21% Similarity=0.331 Sum_probs=122.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...++||++||+.++++.+|+..|..+|.|++|.|.+-+ -++-.-|+||.|.+-+.+-+|+ +....|..-.+++..-
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 357899999999999999999999999999999987764 3344458999999988888777 3333333222222221
Q ss_pred CCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHH
Q 011912 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A 160 (475)
.+ ....++.|+|+.|..++....|.++|..||.|..|.+-.. .+ ||+|.|++...+
T Consensus 449 ~~------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg----q~--yayi~yes~~~a 504 (975)
T KOG0112|consen 449 QP------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG----QP--YAYIQYESPPAA 504 (975)
T ss_pred cc------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC----Cc--ceeeecccCccc
Confidence 11 2245688999999999999999999999999998877433 22 999999999999
Q ss_pred HHHHHhcC-ceeCC--eEEEEEEccCCCCC
Q 011912 161 DKVLLKTF-HELNG--KMVEVKRAVPKELS 187 (475)
Q Consensus 161 ~~Al~~~~-~~l~G--r~i~V~~a~~k~~~ 187 (475)
++|++.+. .-|.+ ++|.|.+|.+....
T Consensus 505 q~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 505 QAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred hhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 99998776 45543 67899888775443
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.73 E-value=7.1e-08 Score=89.92 Aligned_cols=80 Identities=23% Similarity=0.459 Sum_probs=72.9
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhc-CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAF-GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~-G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
....++|..||.-+.|.+|..+|.++ |.|..+++-|.+.||.+|+||||||+++|.|+-|. +|+-.+.++.|++..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999998 78888888899999999999999999999999888 9999999999999877
Q ss_pred CCC
Q 011912 81 VPR 83 (475)
Q Consensus 81 ~~~ 83 (475)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 655
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=6.6e-08 Score=90.13 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=74.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhc-CceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011912 102 PARTKKIFVGGLASTVTESDFKKYFDQF-GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~-G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
......++|..+|.-+.+.+|..+|.+| |.|+++++.+++.|+.+|+||||+|+++|.|+-|.+.|| ..|.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455678999999999999999999988 788888988999999999999999999999999999998 78899999998
Q ss_pred EccCC
Q 011912 180 RAVPK 184 (475)
Q Consensus 180 ~a~~k 184 (475)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 76543
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.65 E-value=8.7e-08 Score=93.03 Aligned_cols=84 Identities=24% Similarity=0.432 Sum_probs=75.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
....+|+|.|||..|+++||+++|++|+.++.+.|.+|+. +++.|.|-|.|+..++|++|+++++ ..|+|+.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 4457899999999999999999999999999999999875 8999999999999999999999998 8999999999887
Q ss_pred cCCCCC
Q 011912 182 VPKELS 187 (475)
Q Consensus 182 ~~k~~~ 187 (475)
.+....
T Consensus 160 ~~~~~~ 165 (243)
T KOG0533|consen 160 SSPSQS 165 (243)
T ss_pred cCcccc
Confidence 665544
No 126
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.64 E-value=8.2e-08 Score=90.77 Aligned_cols=80 Identities=21% Similarity=0.416 Sum_probs=71.6
Q ss_pred CcceeeecCCCCCCCHHHHHH----HHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEE
Q 011912 104 RTKKIFVGGLASTVTESDFKK----YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~----~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V 178 (475)
+..+|||.||++.+..++|++ +|++||.|++|...+. .+-||-|||.|++.+.|..|+..++ .-|-|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999998 9999999999988744 6779999999999999999999998 8899999999
Q ss_pred EEccCCCC
Q 011912 179 KRAVPKEL 186 (475)
Q Consensus 179 ~~a~~k~~ 186 (475)
.+|+.+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99876543
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.62 E-value=6.6e-08 Score=100.98 Aligned_cols=79 Identities=27% Similarity=0.552 Sum_probs=73.5
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccC
Q 011912 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
.+.|||.+|...+...||+.||++||.|+-.+|+.+..+.-.+.|+||++.+.++|.+||+.|+ ++|+|+.|.|.+++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 4679999999999999999999999999999999987777789999999999999999999999 899999999988764
No 128
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.56 E-value=1.3e-07 Score=98.73 Aligned_cols=79 Identities=23% Similarity=0.439 Sum_probs=67.8
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCC
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~ 82 (475)
+-..|||+|||.++++++|+++|..||+|++..|......++...|+||+|.+.++++.|| .+...|.+++|.|+...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 3456999999999999999999999999999888876434455589999999999999999 778889999999986543
No 129
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.52 E-value=2.4e-07 Score=89.89 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=76.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEc
Q 011912 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a 181 (475)
..+.+.+||+|+.+.+|.++|+.+|+.||.|..+.|+.|+.++.+|+|+||+|++.+.+++|+.....+|.++.|+|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 45678899999999999999999999999999999999999989999999999999999999994338999999999988
Q ss_pred cCC
Q 011912 182 VPK 184 (475)
Q Consensus 182 ~~k 184 (475)
+.+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 766
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.50 E-value=3.8e-07 Score=88.58 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=72.2
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
|....+|+|.|||..++++||+|||++|++++.+.|..++ ++++.|.|-|.|+..++|++|+ ++...++++.+++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999999988888886 8999999999999999999999 788999999998876
Q ss_pred cCCC
Q 011912 80 AVPR 83 (475)
Q Consensus 80 a~~~ 83 (475)
..+.
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 5443
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.48 E-value=3.1e-07 Score=96.06 Aligned_cols=78 Identities=24% Similarity=0.514 Sum_probs=71.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
.+.|||.+|+-.+-..||+.||++||+|+-++|+.+..+--.+.|+||.+.+.++|.+|| ++..++++|.|.|++++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 478999999999999999999999999999999998666677899999999999999999 888899999999998754
No 132
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.45 E-value=6.6e-07 Score=89.11 Aligned_cols=82 Identities=27% Similarity=0.409 Sum_probs=73.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceee--------EEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-cee
Q 011912 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL 171 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~--------v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l 171 (475)
.+.....|||.+||.++|.+++.++|.+||.|.+ |++.++.+ ++.||=|+|.|--.++++-|++.++ ..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 4456677999999999999999999999998843 67777765 9999999999999999999999999 899
Q ss_pred CCeEEEEEEccC
Q 011912 172 NGKMVEVKRAVP 183 (475)
Q Consensus 172 ~Gr~i~V~~a~~ 183 (475)
.|++|+|.+|+-
T Consensus 209 rg~~~rVerAkf 220 (382)
T KOG1548|consen 209 RGKKLRVERAKF 220 (382)
T ss_pred cCcEEEEehhhh
Confidence 999999999864
No 133
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=1.2e-07 Score=89.01 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=70.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEE
Q 011912 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~ 180 (475)
....++|||.||-..|+||-|.|+|-+-|.|.+|.|..+++ ++.| ||||+|+++-.+.-|++.++ .+|.++.|.|++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34568999999999999999999999999999999998876 5666 99999999999999999999 788888888766
Q ss_pred c
Q 011912 181 A 181 (475)
Q Consensus 181 a 181 (475)
-
T Consensus 84 r 84 (267)
T KOG4454|consen 84 R 84 (267)
T ss_pred c
Confidence 4
No 134
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=2.8e-07 Score=87.74 Aligned_cols=73 Identities=26% Similarity=0.534 Sum_probs=65.3
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccCC
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~k 184 (475)
.+|||++||+.+.+.||++||..||.|.+|.+. .+|+||+|++..+|+.|+..++ ++|.+.++.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999999875 3589999999999999999988 8899988888888765
Q ss_pred CC
Q 011912 185 EL 186 (475)
Q Consensus 185 ~~ 186 (475)
..
T Consensus 74 ~~ 75 (216)
T KOG0106|consen 74 RR 75 (216)
T ss_pred cc
Confidence 43
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.38 E-value=7.1e-06 Score=87.99 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=64.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeE-EEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLE-AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~-v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
...|||..||..+++.++.++|...-.|++ |.|.+.+ +++.++.|||+|..++++.+|+ ++++.+..|.|+|...
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 357999999999999999999999888887 6666654 7888999999999999998888 6777788899988654
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.38 E-value=8.6e-08 Score=97.24 Aligned_cols=149 Identities=19% Similarity=0.332 Sum_probs=118.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCC-eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH---HcCcccCCeEEEEeecC
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGE-VLEAVIMKDRATGRARGFGFIVFADPAVAERVV---MQKHMIDGRTVEAKKAV 81 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~-V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al---~~~~~i~gr~v~V~~a~ 81 (475)
.+|||+||.+.++..||+.+|...-. +..-.+++ .+|+||...+...|.+|+ ..+.++.|++++|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 58999999999999999999987411 11112333 379999999999999999 34567889999998887
Q ss_pred CCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEe-ecCCCCccceEEEEEecCHHHH
Q 011912 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVM-YDHNTQRPRGFGFITYDSEEAV 160 (475)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~-~d~~tg~~kG~aFV~F~s~e~A 160 (475)
++.. +.+++-|+|+|....||.|..++.+|+.|+.|..+ .|.++- ..-|+|.+.+.+
T Consensus 75 ~kkq------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~ 132 (584)
T KOG2193|consen 75 PKKQ------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQH 132 (584)
T ss_pred hHHH------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHH
Confidence 6543 34668999999999999999999999999988653 343321 234788999999
Q ss_pred HHHHHhcC-ceeCCeEEEEEEccC
Q 011912 161 DKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 161 ~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
+.||.+++ +.|....++|.+-..
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCch
Confidence 99999998 788888888887533
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=3.9e-07 Score=95.74 Aligned_cols=170 Identities=18% Similarity=0.196 Sum_probs=106.9
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEee
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~ 79 (475)
+..+++|+|-|||.++++++|+++|+.||+|++|...+. .++.+||+|-|..+|++|+ ++..+|.++.|+...
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 356789999999999999999999999999999555443 4689999999999999999 888899998887111
Q ss_pred cCCCcchhccc-----cCCCC-CCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEE
Q 011912 80 AVPRDDQNIQN-----RNNSS-IHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153 (475)
Q Consensus 80 a~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~ 153 (475)
...+....... ..... ....+..-....+|+- |++.+...-++..|..++.++. +...... ---||+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-----hq~~~~ 219 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLN-----HQRFVE 219 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchh-----hhhhhh
Confidence 11110000000 00000 0011111112234433 8998888888888888887665 2221111 135778
Q ss_pred ecCHHHHHHHHHhcCceeCCeEEEEEEccC
Q 011912 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183 (475)
Q Consensus 154 F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~ 183 (475)
|.+..++..++......+.+....+.+..+
T Consensus 220 ~~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 220 FADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred hccccchhhcccCCceecCCCCceEEecCC
Confidence 877777744444333455555555555544
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.37 E-value=2.3e-06 Score=71.83 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=63.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhh--cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccC----CeEEEE
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQA--FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID----GRTVEA 77 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~--~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~----gr~v~V 77 (475)
++|+|+|||...|.++|.+++.. .+...-+.+..|-.+..+.|||||-|.+++.|.+.. .+++.+. .|..+|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999977 456677888888878899999999999999999888 5555443 455666
Q ss_pred eecCC
Q 011912 78 KKAVP 82 (475)
Q Consensus 78 ~~a~~ 82 (475)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 66654
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.37 E-value=3e-07 Score=92.63 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=118.4
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCC---CCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEee
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT---GRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~t---G~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~ 79 (475)
....|.|.||.+.++.|++..||..+|+|.++.|+....+ ....-.|||.|.|.+.+..|. +.+..+-++.|.|..
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 3568999999999999999999999999999999874221 344568999999999999888 777777778777765
Q ss_pred cCCCc--chhccc------------cCC----------------CCCCCCCC----------CCCcceeeecCCCCCCCH
Q 011912 80 AVPRD--DQNIQN------------RNN----------------SSIHGSPG----------PARTKKIFVGGLASTVTE 119 (475)
Q Consensus 80 a~~~~--~~~~~~------------~~~----------------~~~~~~~~----------~~~~~~LfV~nLp~~~te 119 (475)
..... ...... ... ......+. ....++|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 43221 110000 000 00000010 112367999999999999
Q ss_pred HHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeC
Q 011912 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELN 172 (475)
Q Consensus 120 edL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~ 172 (475)
.++-+.|+.+|.|....+.... ..-+|.|+|......+.|++.++.++.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 9999999999999877664332 233788999999999999988875443
No 140
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.35 E-value=1.5e-06 Score=87.18 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=76.7
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCcee--------eEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC
Q 011912 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN 172 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~--------~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~ 172 (475)
.....+|||.+||..+++++|.++|.++++|. .|.|-+|++|+++|+-|.|+|++..+|++||+-.. +.|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45667899999999999999999999999883 36788899999999999999999999999999888 8999
Q ss_pred CeEEEEEEccCCCC
Q 011912 173 GKMVEVKRAVPKEL 186 (475)
Q Consensus 173 Gr~i~V~~a~~k~~ 186 (475)
+..|+|.+|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999876654
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.35 E-value=5.1e-07 Score=87.65 Aligned_cols=82 Identities=17% Similarity=0.405 Sum_probs=76.2
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeec
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a 80 (475)
+.+.+.|||+|+.+.+|.++|+..|+.||.|..+.|.+|+.++.+|+|+||+|.+.+.+++++ ++...|.++.++|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 567899999999999999999999999999999999999988899999999999999999999 7999999999999876
Q ss_pred CCC
Q 011912 81 VPR 83 (475)
Q Consensus 81 ~~~ 83 (475)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 543
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.28 E-value=4.9e-06 Score=69.88 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=66.5
Q ss_pred ceeeecCCCCCCCHHHHHHHHhh--cCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC----CeEEEE
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQ--FGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN----GKMVEV 178 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~--~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~----Gr~i~V 178 (475)
++|.|+|||...|.++|.+++.+ .+...-+.++.|..+....|||||-|.++++|.+-.+..+ +.+. .|.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999976 3556667888898889999999999999999999888776 5554 577888
Q ss_pred EEccC
Q 011912 179 KRAVP 183 (475)
Q Consensus 179 ~~a~~ 183 (475)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 143
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=6.4e-08 Score=105.63 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=121.9
Q ss_pred CcEEEEcCCCCCCcHH-HHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNED-RLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~tee-dLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~ 82 (475)
-+++.+.++.+...+. +++..|+.++.|+.|.+......-...-+.++++..+.+++.+. .....+..+.+.|..+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 3566777777666554 67889999999999998874322222228899999999999998 666677777777776665
Q ss_pred CcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHH
Q 011912 83 RDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (475)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~ 162 (475)
++....... .+.......++||+||+..+.++||.+.|..++.|..+.|...+++.+.||+|+|+|..++++.+
T Consensus 651 ~~~~~~~kv------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 651 EEKEENFKV------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred hhhhhccCc------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 542211110 00011344689999999999999999999999998888777667788999999999999999999
Q ss_pred HHHhcCceeCC
Q 011912 163 VLLKTFHELNG 173 (475)
Q Consensus 163 Al~~~~~~l~G 173 (475)
||+.....+-+
T Consensus 725 aV~f~d~~~~g 735 (881)
T KOG0128|consen 725 AVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhh
Confidence 99988744434
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.23 E-value=1e-06 Score=84.62 Aligned_cols=79 Identities=28% Similarity=0.573 Sum_probs=72.0
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
.++-+||++.|..++++|.|-..|.+|-.....++++|+.|++++||+||.|.+++++.+|+ ++...+..|.|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 45679999999999999999999999998899999999999999999999999999999999 7888888888877654
Q ss_pred C
Q 011912 81 V 81 (475)
Q Consensus 81 ~ 81 (475)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 145
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.17 E-value=1e-05 Score=76.35 Aligned_cols=87 Identities=17% Similarity=0.300 Sum_probs=67.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEee-cCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC---CeEE
Q 011912 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMY-DHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN---GKMV 176 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~-d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~---Gr~i 176 (475)
+...++|||.+||.++...||..+|+.|--.+.+.|.. ++.....+-+|||+|.+.++|.+|+.+++ ..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 44579999999999999999999999986666555543 33334455799999999999999999998 6664 5678
Q ss_pred EEEEccCCCCCC
Q 011912 177 EVKRAVPKELSP 188 (475)
Q Consensus 177 ~V~~a~~k~~~~ 188 (475)
.|++|+...++.
T Consensus 111 hiElAKSNtK~k 122 (284)
T KOG1457|consen 111 HIELAKSNTKRK 122 (284)
T ss_pred EeeehhcCcccc
Confidence 888877655443
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=1.6e-06 Score=91.23 Aligned_cols=71 Identities=18% Similarity=0.356 Sum_probs=63.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEE
Q 011912 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~ 177 (475)
...+.+|+|-|||.+|++++|+++|+.||+|.+|+.- -..++.+||+|-|..+|++|++.++ .+|.+++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4567899999999999999999999999999996543 3457899999999999999999999 899999888
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.99 E-value=1e-05 Score=87.11 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=70.7
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCC---CCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEE
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT---GRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~t---G~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V 77 (475)
...+.|||+||++.++|+.|...|..||+|..|+||.-+.. -+.+-|+||.|-+..+|++|+ ++++.+....+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 34689999999999999999999999999999999975422 456789999999999999999 8899999999999
Q ss_pred eecCC
Q 011912 78 KKAVP 82 (475)
Q Consensus 78 ~~a~~ 82 (475)
-|.++
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 88744
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.90 E-value=1.7e-05 Score=67.86 Aligned_cols=69 Identities=26% Similarity=0.390 Sum_probs=44.0
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-c-----eeCCeEEEEE
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H-----ELNGKMVEVK 179 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~-----~l~Gr~i~V~ 179 (475)
..|+|.+++..++.++|+++|++|+.|..|.+.+... .|+|.|.++++|++|++++. . .|.+..++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3588999999999999999999999999999876543 79999999999999998765 2 4566665554
Q ss_pred E
Q 011912 180 R 180 (475)
Q Consensus 180 ~ 180 (475)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.82 E-value=1.7e-05 Score=79.86 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=73.4
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCee--------EEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCe
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVL--------EAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGR 73 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~--------~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr 73 (475)
+.-+|||-.||..+++++|.++|.+++.|+ .|+|.++++|++.|+-|.|.|.|+..|++|| .+...+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456899999999999999999999999775 3778899999999999999999999999999 788889999
Q ss_pred EEEEeecCCCcc
Q 011912 74 TVEAKKAVPRDD 85 (475)
Q Consensus 74 ~v~V~~a~~~~~ 85 (475)
+|+|..|..+..
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999988766553
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.74 E-value=8.9e-05 Score=60.04 Aligned_cols=67 Identities=15% Similarity=0.303 Sum_probs=45.9
Q ss_pred ceeeecCCCCCCCHHH----HHHHHhhcC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011912 106 KKIFVGGLASTVTESD----FKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 106 ~~LfV~nLp~~~teed----L~~~F~~~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
..|+|.|||.+.+... |+++++-|| .|.+|. .+.|+|.|.+++.|++|++.++ .++-|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988765 556666776 555541 2379999999999999999998 88999999999
Q ss_pred Ecc
Q 011912 180 RAV 182 (475)
Q Consensus 180 ~a~ 182 (475)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 873
No 151
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.72 E-value=5.8e-05 Score=75.42 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=67.2
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcC--ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEE
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFG--IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G--~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~ 179 (475)
+.-++||+||-|++|++||.+.+...| .|.++++..++.++++||||+|...++.++++.++.+. ++|+|..-+|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 446799999999999999999998877 46788888889899999999999999999999999998 79999865553
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.70 E-value=5.6e-05 Score=81.54 Aligned_cols=83 Identities=19% Similarity=0.380 Sum_probs=73.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecC---CCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEE
Q 011912 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH---NTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~---~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~ 177 (475)
.+.++.|||.||++.+++++|...|..||+|..|+|+..+ +..+.+-++||.|-+..++++|++.++ ..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567889999999999999999999999999999998643 445667799999999999999999998 889999999
Q ss_pred EEEccCC
Q 011912 178 VKRAVPK 184 (475)
Q Consensus 178 V~~a~~k 184 (475)
+-|.++-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 153
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.65 E-value=4.2e-05 Score=78.36 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=57.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeec---CCCC--c--------cceEEEEEecCHHHHHHHHHhcCc
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD---HNTQ--R--------PRGFGFITYDSEEAVDKVLLKTFH 169 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d---~~tg--~--------~kG~aFV~F~s~e~A~~Al~~~~~ 169 (475)
-+.++|.+.|||.+-.-|.|.++|..+|.|+.|+|+.. ++.. . .+=+|||||++.++|.+|.++++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46789999999999999999999999999999999875 2221 1 144799999999999999999973
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.59 E-value=0.00017 Score=61.68 Aligned_cols=53 Identities=23% Similarity=0.444 Sum_probs=35.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
+.|+|.+++.+++.++|+++|++|++|..|++.+... .|+|.|.+++.|++|+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKAL 54 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHH
Confidence 4689999999999999999999999999999988642 6999999999999999
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.52 E-value=0.00045 Score=56.04 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=44.6
Q ss_pred cEEEEcCCCCCCcHHH----HHHHHhhcC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011912 6 GKLFIGGISWDTNEDR----LRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 6 ~~LfVgnLP~d~teed----Lke~F~~~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
..|+|.|||.+.+... |+++++.|| +|.+| .. +.|+|.|.+++.|++|. +++..+.+++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~--------~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SG--------GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----T--------T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eC--------CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999987655 566677776 45443 22 46999999999999999 89999999999998
Q ss_pred ecCC
Q 011912 79 KAVP 82 (475)
Q Consensus 79 ~a~~ 82 (475)
....
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8754
No 156
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.38 E-value=9.9e-05 Score=74.06 Aligned_cols=80 Identities=23% Similarity=0.510 Sum_probs=71.8
Q ss_pred cEEE-EcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHH-cCcccCCeEEEEeecCCC
Q 011912 6 GKLF-IGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM-QKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 6 ~~Lf-VgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~-~~~~i~gr~v~V~~a~~~ 83 (475)
.++| |.+|+.++++++|+++|..++.|..+++..++.++.+++|++|+|.+.+.+.+++. ..+.+.++++.+.+..++
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 3455 99999999999999999999999999999999999999999999999999999995 677888999999887765
Q ss_pred cc
Q 011912 84 DD 85 (475)
Q Consensus 84 ~~ 85 (475)
..
T Consensus 265 ~~ 266 (285)
T KOG4210|consen 265 PK 266 (285)
T ss_pred cc
Confidence 43
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.36 E-value=0.00036 Score=52.07 Aligned_cols=52 Identities=27% Similarity=0.466 Sum_probs=41.9
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHH
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al 164 (475)
+.|-|.+.+.+..+..|+ +|..||+|+++.+.... -..+|+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 468888999877755554 88899999998886332 38999999999999986
No 158
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00098 Score=70.14 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=56.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhh-cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQA-FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~-~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
.+||||+.||.-++.+||-.+|++ ||.|..+-|-.|++-+.+||-+-|.|.+.+.-.+||
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 579999999999999999999995 999999999999778899999999999999999999
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.13 E-value=0.0011 Score=49.38 Aligned_cols=52 Identities=15% Similarity=0.383 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
+.|-|.+.+.+.. ++|.++|..||+|+.+.+...+ -+.+|+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 5688888887755 4555688899999998887332 48999999999999985
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.04 E-value=0.00042 Score=69.41 Aligned_cols=73 Identities=18% Similarity=0.460 Sum_probs=61.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcC--CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEe
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G--~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~ 78 (475)
-.+||+||-|-+|++||.+.+...| .+.+++++.++.++.+||||+|...+.+..++.+ +-+++|+++.-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3689999999999999999998766 5778889999999999999999999998888887 56667777655443
No 161
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.96 E-value=0.0013 Score=63.63 Aligned_cols=101 Identities=18% Similarity=0.298 Sum_probs=79.9
Q ss_pred HHHHHHHHcCcccCCeEEEEeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEE
Q 011912 58 AVAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVV 137 (475)
Q Consensus 58 e~A~~Al~~~~~i~gr~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I 137 (475)
....++-++.....++.++|.++.. ..|+|.||..-++.+.|++.|+.||.|...++
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~-----------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~ 63 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH-----------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVA 63 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc-----------------------ceEEEEecchhhhhHHHHHhhhhcCccchhee
Confidence 3333344677888899999998753 46999999999999999999999999988877
Q ss_pred eecCCCCccceEEEEEecCHHHHHHHHHhcCc-----eeCCeEEEEEEcc
Q 011912 138 MYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH-----ELNGKMVEVKRAV 182 (475)
Q Consensus 138 ~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~-----~l~Gr~i~V~~a~ 182 (475)
+.|.. ++..+..+|+|...-.+.+|+..+.+ +..++.+-|....
T Consensus 64 ~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 64 KVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred eeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 77754 78888999999999999999988752 4455566665543
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.95 E-value=0.0016 Score=65.12 Aligned_cols=81 Identities=20% Similarity=0.465 Sum_probs=63.4
Q ss_pred CCcceeeecCCCCCCCHHHH------HHHHhhcCceeeEEEeecCCC-CccceEE--EEEecCHHHHHHHHHhcC-ceeC
Q 011912 103 ARTKKIFVGGLASTVTESDF------KKYFDQFGIITDVVVMYDHNT-QRPRGFG--FITYDSEEAVDKVLLKTF-HELN 172 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL------~~~F~~~G~I~~v~I~~d~~t-g~~kG~a--FV~F~s~e~A~~Al~~~~-~~l~ 172 (475)
.+.+-+||-+||+.+..|++ .++|.+||.|..|.|-+.... ..-.+.+ +|+|.+.|+|.+||...+ ..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34567899999999888873 589999999999988654311 1111223 999999999999999998 8999
Q ss_pred CeEEEEEEccC
Q 011912 173 GKMVEVKRAVP 183 (475)
Q Consensus 173 Gr~i~V~~a~~ 183 (475)
||.|+..+-..
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999987654
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.92 E-value=0.0012 Score=68.06 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=54.4
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEec---CCCC---C-------cccEEEEEEcCHHHHHHHH
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKD---RATG---R-------ARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~d---k~tG---~-------srG~aFVeF~s~e~A~~Al 64 (475)
|+..++|.+.|||.|-.-+.|.++|..+|.|+.|.|.+- +.+. . .+-||||||...+.|++|.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 467899999999999999999999999999999999875 3222 1 2568999999999999999
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.81 E-value=0.00074 Score=65.29 Aligned_cols=71 Identities=23% Similarity=0.437 Sum_probs=58.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCC--------CCcc----cEEEEEEcCHHHHHHHH--HcCcc
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT--------GRAR----GFGFIVFADPAVAERVV--MQKHM 69 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~t--------G~sr----G~aFVeF~s~e~A~~Al--~~~~~ 69 (475)
....|||.+||+.++...|+++|+.||+|-.|.|.....+ +.++ --++|||.++..|.++. +|+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999876554 2222 23789999999999888 78877
Q ss_pred cCCeE
Q 011912 70 IDGRT 74 (475)
Q Consensus 70 i~gr~ 74 (475)
|.+++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77765
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.74 E-value=0.0053 Score=51.94 Aligned_cols=78 Identities=24% Similarity=0.335 Sum_probs=52.3
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCceeeEE-EeecC------CCCccceEEEEEecCHHHHHHHHHhcCceeCCe-EE
Q 011912 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVV-VMYDH------NTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK-MV 176 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~-I~~d~------~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr-~i 176 (475)
..-|.|-+.|.. ....|.++|++||.|++.. +.++. ..........|+|+++.+|++||.+....|.+. .|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 456888899988 5677889999999998875 11110 001123378999999999999999999889885 56
Q ss_pred EEEEccC
Q 011912 177 EVKRAVP 183 (475)
Q Consensus 177 ~V~~a~~ 183 (475)
-|++.++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 6777643
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.72 E-value=0.0053 Score=51.95 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=52.4
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEE-EEecC------CCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeE
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAV-IMKDR------ATGRARGFGFIVFADPAVAERVV-MQKHMIDGRT 74 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~-i~~dk------~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~ 74 (475)
.+++-|.|=+.|+. ....|.++|++||+|++.. +.++. ..-....+-.|+|.++.+|++|| +|...+.+..
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 45677888899988 7778889999999998775 11110 00122358899999999999999 8888888754
Q ss_pred -EEEeecC
Q 011912 75 -VEAKKAV 81 (475)
Q Consensus 75 -v~V~~a~ 81 (475)
|-|++.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4466553
No 167
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.64 E-value=0.0091 Score=45.95 Aligned_cols=57 Identities=18% Similarity=0.354 Sum_probs=46.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhc---CceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQF---GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~---G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~ 167 (475)
.+..+|+|+++. +++.+||+.+|..| .....|..+-|. .|-|.|.+++.|.+||.++
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 345789999985 58999999999998 135678887774 4889999999999999764
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.63 E-value=0.0045 Score=62.02 Aligned_cols=79 Identities=18% Similarity=0.463 Sum_probs=61.3
Q ss_pred CcEEEEcCCCCCCcHHHH------HHHHhhcCCeeEEEEEecCCC-CCcccEE--EEEEcCHHHHHHHH--HcCcccCCe
Q 011912 5 LGKLFIGGISWDTNEDRL------RDYFQAFGEVLEAVIMKDRAT-GRARGFG--FIVFADPAVAERVV--MQKHMIDGR 73 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedL------ke~F~~~G~V~~v~i~~dk~t-G~srG~a--FVeF~s~e~A~~Al--~~~~~i~gr 73 (475)
.+-|||-.||+.+-.|++ .++|.+||+|+.|.|-+.... ....+.+ ||.|.++|+|.+|| .+...++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 356899999999866662 489999999999888775422 2222334 99999999999999 788999999
Q ss_pred EEEEeecCCC
Q 011912 74 TVEAKKAVPR 83 (475)
Q Consensus 74 ~v~V~~a~~~ 83 (475)
.|+..+-..+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9998765443
No 169
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.55 E-value=0.0041 Score=65.94 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHh--hcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC---ceeCCeEEE
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFD--QFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVE 177 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~--~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~i~ 177 (475)
.+.+.|.|+.||..+.+|+||.||. .|-++++|.+-.+.. =||+|+++.||+.|.+.+. ++|.||.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3446678899999999999999995 477888888765542 5999999999999998776 589999876
Q ss_pred EEEc
Q 011912 178 VKRA 181 (475)
Q Consensus 178 V~~a 181 (475)
..+.
T Consensus 246 ARIK 249 (684)
T KOG2591|consen 246 ARIK 249 (684)
T ss_pred hhhh
Confidence 6543
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.002 Score=68.31 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=53.6
Q ss_pred cCcEEEEcCCCCCC--cHH----HHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCC
Q 011912 4 ELGKLFIGGISWDT--NED----RLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG 72 (475)
Q Consensus 4 d~~~LfVgnLP~d~--tee----dLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~g 72 (475)
.+..|+|-++|.-- ..+ -|..+|+++|+|+.+.+..+..+ ..+||.|++|++..+|++|+ ++++.|+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 35689999999642 222 34678999999999999888654 49999999999999999999 56665553
No 171
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.45 E-value=0.067 Score=53.07 Aligned_cols=164 Identities=10% Similarity=0.139 Sum_probs=102.6
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCC-------CCCcccEEEEEEcCHHHHHHHH--------HcCc
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRA-------TGRARGFGFIVFADPAVAERVV--------MQKH 68 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~-------tG~srG~aFVeF~s~e~A~~Al--------~~~~ 68 (475)
..|.|.+.|+..+++-+++.+.|.+|++|++|.++.+.. ..+..-.+.+-|-+++.+-... .-+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999998751 1233457899999999886655 2244
Q ss_pred ccCCeEEEEeecCCCcchhcc-ccCCCCC---------CCCCCCCCcceeeecCCCCCCCHHH-HHHHHh---hcC----
Q 011912 69 MIDGRTVEAKKAVPRDDQNIQ-NRNNSSI---------HGSPGPARTKKIFVGGLASTVTESD-FKKYFD---QFG---- 130 (475)
Q Consensus 69 ~i~gr~v~V~~a~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~LfV~nLp~~~teed-L~~~F~---~~G---- 130 (475)
.+.-..+.+....-+...... ..+.... ........++.|.|.-- ..|.++| |.+.+. .-.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 555666666554321111000 0100000 01123456788888643 4453433 333331 111
Q ss_pred ceeeEEEeecC--CCCccceEEEEEecCHHHHHHHHHhcC
Q 011912 131 IITDVVVMYDH--NTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 131 ~I~~v~I~~d~--~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
.|+.|.|+... ...-++-||.++|-+...|...++.+.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 46777777532 334567799999999888888887655
No 172
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.25 E-value=0.0055 Score=62.52 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=64.8
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecC---CCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEcc
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH---NTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~---~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~ 182 (475)
..|.|.||.+.+|.++++.||.-.|.|.++.++... ......-.|||.|.+.+.+..|..+.|+.|-++.|.|-.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 479999999999999999999999999999887632 22234458999999999999999999988888888887653
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.24 E-value=0.016 Score=52.05 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=45.5
Q ss_pred HHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccCC
Q 011912 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184 (475)
Q Consensus 121 dL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~k 184 (475)
+|.+.|..||+|+=|+++.+ .-+|+|.+-++|.+|+++...+++|+.|+|+...|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 67788889999888877754 379999999999999999999999999999988763
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.24 E-value=0.013 Score=47.59 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=42.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011912 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
.+.+....+|. +|..+...||.++|+.||.|. |..+.|. .|||...+.+.|+.|+..+.
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 34555667777 999999999999999999874 4555442 69999999999999887765
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.013 Score=62.36 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=59.5
Q ss_pred CcceeeecCCCCCCC------HHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC-CeE
Q 011912 104 RTKKIFVGGLASTVT------ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN-GKM 175 (475)
Q Consensus 104 ~~~~LfV~nLp~~~t------eedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~-Gr~ 175 (475)
-...|+|.++|.--. ..-|..+|+++|+|+.+.++.+.+++ .+||.|++|++..+|+.|++.++ +.|+ .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 456788888886421 23466889999999999999997754 89999999999999999999888 5553 455
Q ss_pred EEEEE
Q 011912 176 VEVKR 180 (475)
Q Consensus 176 i~V~~ 180 (475)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 55543
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.14 E-value=0.015 Score=57.49 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcCceeeEEEeecCCCCccc-eEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPR-GFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 119 eedL~~~F~~~G~I~~v~I~~d~~tg~~k-G~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
++++++.+++||+|..|.|..++..-... =-.||+|+..++|.+|+..+| ..|.||.+...+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35788999999999999988764321111 136999999999999999999 8999999887654
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.07 E-value=0.0084 Score=64.12 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=61.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHHh-hcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ce---eCCeE
Q 011912 101 GPARTKKIFVGGLASTVTESDFKKYFD-QFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HE---LNGKM 175 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~teedL~~~F~-~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~---l~Gr~ 175 (475)
.....+.|||.||-...|.-+|++++. .++.|+++ +.|+. |-.|||.|.+.++|.+.++.|+ .. -+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445678999999999999999999998 57777777 44443 3479999999999999998887 43 36788
Q ss_pred EEEEEccC
Q 011912 176 VEVKRAVP 183 (475)
Q Consensus 176 i~V~~a~~ 183 (475)
|.|.++..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88888654
No 178
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.05 E-value=0.0082 Score=58.26 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=53.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
..|+|.||+.-++-|.|.+.|+.|++|+..+++.|. .++..+-.+|+|..+-.|.+|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~ 89 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAA 89 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHH
Confidence 679999999999999999999999999998888874 5788889999999999999998
No 179
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.04 E-value=0.0053 Score=59.53 Aligned_cols=72 Identities=11% Similarity=0.277 Sum_probs=58.9
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCC--------Cccc----eEEEEEecCHHHHHHHHHhcC-ce
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNT--------QRPR----GFGFITYDSEEAVDKVLLKTF-HE 170 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~t--------g~~k----G~aFV~F~s~e~A~~Al~~~~-~~ 170 (475)
.+-.|||.+||+.+....|+++|.+||+|-+|.+.....+ +..+ -.+.|+|.+...|+++.+.+| ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999988765443 1111 246899999999999998888 77
Q ss_pred eCCeE
Q 011912 171 LNGKM 175 (475)
Q Consensus 171 l~Gr~ 175 (475)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 87764
No 180
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.97 E-value=0.0055 Score=50.53 Aligned_cols=71 Identities=14% Similarity=0.274 Sum_probs=46.5
Q ss_pred EEEEEcCHHHHHHHH---HcCcccCCeEEEEeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHH
Q 011912 50 GFIVFADPAVAERVV---MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYF 126 (475)
Q Consensus 50 aFVeF~s~e~A~~Al---~~~~~i~gr~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F 126 (475)
|+|.|.+++.|++.+ .....++...++|+...-....-.+-. .......++|.|.+||..+.+|+|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q-------v~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ-------VFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE-------EEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 689999999999999 233455666666654322111100000 0123556899999999999999999876
Q ss_pred h
Q 011912 127 D 127 (475)
Q Consensus 127 ~ 127 (475)
+
T Consensus 74 e 74 (88)
T PF07292_consen 74 E 74 (88)
T ss_pred E
Confidence 4
No 181
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.61 E-value=0.0079 Score=61.93 Aligned_cols=77 Identities=27% Similarity=0.445 Sum_probs=60.9
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC--ceeCCeEEEEEEccC
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF--HELNGKMVEVKRAVP 183 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~--~~l~Gr~i~V~~a~~ 183 (475)
.+|||.||.+.++..||+.+|...-.-..-.++ ...+|+||.+.++..|.+|++.++ .++.|++++|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 579999999999999999999764111111111 124699999999999999999998 599999999999888
Q ss_pred CCCCC
Q 011912 184 KELSP 188 (475)
Q Consensus 184 k~~~~ 188 (475)
+..+.
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 76543
No 182
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.58 E-value=0.012 Score=61.57 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=59.2
Q ss_pred ceeeecCCCCCC-CHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccCC
Q 011912 106 KKIFVGGLASTV-TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184 (475)
Q Consensus 106 ~~LfV~nLp~~~-teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~k 184 (475)
+.|-+.-.|..+ |-++|...|.+||.|+.|.|-.... .|.|+|.+..+|-+|.......|++|.|+|.|-.+-
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 345566666664 4579999999999999998865533 699999999999888877778999999999998873
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.50 E-value=0.034 Score=55.00 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=51.1
Q ss_pred HHHHHHHHhhcCCeeEEEEEecCCCCCcc-cEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeec
Q 011912 19 EDRLRDYFQAFGEVLEAVIMKDRATGRAR-GFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (475)
Q Consensus 19 eedLke~F~~~G~V~~v~i~~dk~tG~sr-G~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a 80 (475)
|+++++.+++||.|..|.|+.++..-... ---||+|...++|.+|+ ++...|.||.|....-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 56889999999999999998875433222 23799999999999999 8999999999987654
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.37 E-value=0.053 Score=44.12 Aligned_cols=51 Identities=14% Similarity=0.280 Sum_probs=38.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
+...+|. +|+.+...||.++|+.||.|. |..+.|. -|||.+.+++.|..|+
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~ 59 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVM 59 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHH
Confidence 3455665 999999999999999999874 6666663 5999999999999888
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.36 E-value=0.011 Score=57.46 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=48.6
Q ss_pred HHHHHHHh-hcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCCC
Q 011912 20 DRLRDYFQ-AFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 20 edLke~F~-~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~~ 83 (475)
+||...|+ +||+|++++|-.+. .---+|-++|+|..+|+|++|+ +++..+.+++|..+.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 34444444 79999998776653 2234688999999999999999 8999999999998876543
No 186
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.35 E-value=0.0083 Score=58.27 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=48.9
Q ss_pred HHHHHHHh-hcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011912 120 SDFKKYFD-QFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 120 edL~~~F~-~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
|||...|+ +||+|+++.|..+.. -.-+|-++|+|..+|+|++|++.++ ..|.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44444454 899999997765533 2346789999999999999999999 89999999887753
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.33 E-value=0.088 Score=40.53 Aligned_cols=53 Identities=23% Similarity=0.474 Sum_probs=44.7
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhc----CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHH
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAF----GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~----G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~ 65 (475)
...+|+|+++. +++.+||+.+|..| .+ ..|..+.|. -|=|.|.+++.|.+||.
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 35689999996 68999999999998 54 477888875 48999999999999984
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.96 E-value=0.038 Score=58.88 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=57.6
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhh--cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH----HcCcccCCeEEEE
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQA--FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV----MQKHMIDGRTVEA 77 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~--~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al----~~~~~i~gr~v~V 77 (475)
+-|.|.|+.||..+-+|+||-||+. |-++++|.+.... -=||.|++.+||+.|. ...++|.+|+|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4578999999999999999999976 8889999988764 2599999999999998 5667888888865
Q ss_pred e
Q 011912 78 K 78 (475)
Q Consensus 78 ~ 78 (475)
+
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.91 E-value=0.017 Score=60.50 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=65.5
Q ss_pred CCCcCcEEEEcCCCCCC-cHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEe
Q 011912 1 MEMELGKLFIGGISWDT-NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAK 78 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~-teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~ 78 (475)
|+.|.+.|-+.-+|+.. +-++|...|.+||+|+.|.|-... -.|.|.|++..+|-+|. .....|++|.|+|.
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEE
Confidence 46778888888888886 678999999999999998886642 25999999999996666 78889999999999
Q ss_pred ecCCCc
Q 011912 79 KAVPRD 84 (475)
Q Consensus 79 ~a~~~~ 84 (475)
|..+..
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 987744
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.78 E-value=0.035 Score=51.84 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=39.8
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhh-cCCe---eEEEEEe-cCCCCC-cccEEEEEEcCHHHHHHHH--HcCccc
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQA-FGEV---LEAVIMK-DRATGR-ARGFGFIVFADPAVAERVV--MQKHMI 70 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~-~G~V---~~v~i~~-dk~tG~-srG~aFVeF~s~e~A~~Al--~~~~~i 70 (475)
.+..+|.|+.||+.+||+++.+.+.. +++. ..+.-.. ++.... .-.-|+|.|.+.+++...+ .+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 45679999999999999999997776 5544 2232112 111121 1245999999999988777 444433
No 191
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.46 E-value=0.12 Score=46.54 Aligned_cols=54 Identities=24% Similarity=0.435 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCC
Q 011912 21 RLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 21 dLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~ 82 (475)
+|.+.|..||+|+=|++..+. -+|.|.+-+.|-+|+ ++..++.++.|+|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 677788889988877776653 799999999999999 999999999999976543
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.66 E-value=0.047 Score=51.03 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=47.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhh-cCce---eeEEEeec--CCCCccceEEEEEecCHHHHHHHHHhcC-ceeCC---
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQ-FGII---TDVVVMYD--HNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG--- 173 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~-~G~I---~~v~I~~d--~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~G--- 173 (475)
...+|.|+.||+.+||+++.+.+.. ++.. ..+.-... ......-.-|+|.|.+.+++...++..+ +.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999997766 5444 22221111 1111123359999999999999888876 54433
Q ss_pred --eEEEEEEccC
Q 011912 174 --KMVEVKRAVP 183 (475)
Q Consensus 174 --r~i~V~~a~~ 183 (475)
.+..|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3566666644
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.60 E-value=0.36 Score=43.27 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=58.6
Q ss_pred CCCCcceeeecCCCCCCCH-HHHH---HHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEE
Q 011912 101 GPARTKKIFVGGLASTVTE-SDFK---KYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176 (475)
Q Consensus 101 ~~~~~~~LfV~nLp~~~te-edL~---~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i 176 (475)
..++..+|.|+=|..++.. |||+ +.++.||+|..|... ++ -.|.|.|+|..+|.+|+.+.....-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 4566788999877777543 4555 455679999999875 22 26999999999999999998888888999
Q ss_pred EEEEcc
Q 011912 177 EVKRAV 182 (475)
Q Consensus 177 ~V~~a~ 182 (475)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888753
No 194
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.06 E-value=0.48 Score=47.31 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=56.6
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCe-EEEEEEccCC
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK-MVEVKRAVPK 184 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr-~i~V~~a~~k 184 (475)
.=|.|-++|..-. .-|..+|++||+|++.+.... + .+-.|.|.+.-+|++||.+..+.|++. .|-|+.+..|
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 3455667776543 457789999999988766522 2 289999999999999999999888775 5667776666
Q ss_pred CCCC
Q 011912 185 ELSP 188 (475)
Q Consensus 185 ~~~~ 188 (475)
....
T Consensus 271 svi~ 274 (350)
T KOG4285|consen 271 SVIN 274 (350)
T ss_pred HHhc
Confidence 5544
No 195
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.77 E-value=0.03 Score=62.69 Aligned_cols=64 Identities=22% Similarity=0.423 Sum_probs=53.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
.+++||++||+..+++.+|+..|..+|.|.+|.|...+.... --|+||.|.+.+.+-.|+..+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~e-sa~~f~~~~n~dmtp~ak~e~s 434 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTE-SAYAFVSLLNTDMTPSAKFEES 434 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcc-cchhhhhhhccccCcccchhhc
Confidence 467899999999999999999999999999999977654333 3489999999888888776554
No 196
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.60 E-value=0.084 Score=56.77 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=55.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhh-cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCccc---CCeEEEEe
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQA-FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI---DGRTVEAK 78 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~-~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i---~gr~v~V~ 78 (475)
++.|+|.||=.-+|.-+|++|+.+ ++.|++++|-+-| -.|||.|.+.++|.+.+ +++..+ +.+.|.|.
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK------ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK------SHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh------cceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 678999999999999999999984 7778887654443 47999999999998887 666544 35667666
Q ss_pred ec
Q 011912 79 KA 80 (475)
Q Consensus 79 ~a 80 (475)
+.
T Consensus 518 f~ 519 (718)
T KOG2416|consen 518 FV 519 (718)
T ss_pred ec
Confidence 55
No 197
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.55 E-value=0.071 Score=58.05 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=77.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
.-+|||+||...+.++-++.++..||-|..++.++ |+|++|..+..+.+|+ +....++++++.++....
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 46899999999999999999999999887766655 8999999999999999 666777787776654311
Q ss_pred CcchhccccC--CCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhc
Q 011912 83 RDDQNIQNRN--NSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQF 129 (475)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~ 129 (475)
.-........ ....+.-.+....+.++|.++|....+...+..|.--
T Consensus 111 ~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is 159 (668)
T KOG2253|consen 111 TIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQIS 159 (668)
T ss_pred hhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhcc
Confidence 1000000000 0000111111224567888888887777777666543
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.52 E-value=0.61 Score=41.83 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCcCcEEEEcCCCCCC-cHHHHH---HHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEE
Q 011912 2 EMELGKLFIGGISWDT-NEDRLR---DYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVE 76 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~-teedLk---e~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~ 76 (475)
|.-..+|.|+=|.+++ ..+||+ ..++.||+|++|.+.-. --|.|+|+|..+|.+|+ .-.....+..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 4456788998888876 334444 55677999999877543 25999999999999999 333455666666
Q ss_pred Eeec
Q 011912 77 AKKA 80 (475)
Q Consensus 77 V~~a 80 (475)
..|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 6653
No 199
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.57 E-value=0.89 Score=49.09 Aligned_cols=126 Identities=18% Similarity=0.287 Sum_probs=75.1
Q ss_pred CCcCcEEEEcCCCCC-CcHHHHHHHHhhc----CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEE
Q 011912 2 EMELGKLFIGGISWD-TNEDRLRDYFQAF----GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVE 76 (475)
Q Consensus 2 e~d~~~LfVgnLP~d-~teedLke~F~~~----G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~ 76 (475)
+...++|=|.||.|+ +..+||.-+|..| |.|.+|.|.... |-... +....+.+.+++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FGkeR------M~eEeV~GP~~e 232 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FGKER------MKEEEVHGPPKE 232 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hhHHH------hhhhcccCChhh
Confidence 456789999999999 6889999999887 468888887753 22112 222334455444
Q ss_pred EeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecC
Q 011912 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (475)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s 156 (475)
+.......... . -.+..-++-.++.+.+|. |..++. -||.|+|++
T Consensus 233 l~~~~e~~~~s-------------------~-----sD~ee~~~~~~~kLR~Yq-~~rLkY----------YyAVvecDs 277 (650)
T KOG2318|consen 233 LFKPVEEYKES-------------------E-----SDDEEEEDVDREKLRQYQ-LNRLKY----------YYAVVECDS 277 (650)
T ss_pred hccccccCccc-------------------c-----cchhhhhhHHHHHHHHHH-hhhhee----------EEEEEEecC
Confidence 43222111100 0 111111223355555553 222222 289999999
Q ss_pred HHHHHHHHHhcC-ceeCC--eEEEEEE
Q 011912 157 EEAVDKVLLKTF-HELNG--KMVEVKR 180 (475)
Q Consensus 157 ~e~A~~Al~~~~-~~l~G--r~i~V~~ 180 (475)
.+.|.+..+.|. .+|.- ..|.+.+
T Consensus 278 i~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 278 IETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred chHHHHHHHhcCcceeccccceeeeee
Confidence 999999999998 66654 4555554
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.02 E-value=1.9 Score=37.21 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=46.9
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-cee
Q 011912 105 TKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL 171 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l 171 (475)
...+.+-..|..++.++|..+.+.+- .|..++|++|.. ..+-.++++|.+.++|++-.+..| +.|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34445555666667777877776654 467788888753 456789999999999999998776 544
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.43 E-value=0.1 Score=52.68 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=61.9
Q ss_pred CCcceeeecCCCCCCCHHHHH---HHHhhcCceeeEEEeecCC--C-CccceEEEEEecCHHHHHHHHHhcC-ceeCCeE
Q 011912 103 ARTKKIFVGGLASTVTESDFK---KYFDQFGIITDVVVMYDHN--T-QRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM 175 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~---~~F~~~G~I~~v~I~~d~~--t-g~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~ 175 (475)
.+.+.+||-.|+..+.++++. +.|.+||.|..|.+..+.. . --.---++|+|+.+|+|+.||...+ ..++++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 455678999999887776554 6788899999998887652 1 1112237999999999999999888 7788888
Q ss_pred EEEEEccCC
Q 011912 176 VEVKRAVPK 184 (475)
Q Consensus 176 i~V~~a~~k 184 (475)
|+..+..++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 777776654
No 202
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.37 E-value=0.82 Score=43.05 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=44.6
Q ss_pred CCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC---ceeCCeEEEEEEccCCC
Q 011912 117 VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVEVKRAVPKE 185 (475)
Q Consensus 117 ~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~i~V~~a~~k~ 185 (475)
-..+.|+++|..+..+..+.+++.-. -..|.|.+.++|.+|...++ ..|.++.|+|.++.+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34588999999999998888875421 48899999999999999977 58999999999885443
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.26 E-value=0.22 Score=50.43 Aligned_cols=79 Identities=19% Similarity=0.421 Sum_probs=58.5
Q ss_pred cEEEEcCCCCCCcHHHHH---HHHhhcCCeeEEEEEecCCC-CCc--ccEEEEEEcCHHHHHHHH--HcCcccCCeEEEE
Q 011912 6 GKLFIGGISWDTNEDRLR---DYFQAFGEVLEAVIMKDRAT-GRA--RGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLk---e~F~~~G~V~~v~i~~dk~t-G~s--rG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V 77 (475)
+.+||-.|+.++.++++. ++|.+||.|..|.+.+++.. ... .--++|.|..+|+|..|| -+...++++.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567888899887555443 58889999999999887631 111 112799999999999999 6777888888777
Q ss_pred eecCCCc
Q 011912 78 KKAVPRD 84 (475)
Q Consensus 78 ~~a~~~~ 84 (475)
.....+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 6665544
No 204
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.93 E-value=1.5 Score=34.80 Aligned_cols=64 Identities=22% Similarity=0.397 Sum_probs=35.3
Q ss_pred EEEEcCCCC--CCcHHHHHHHHhhcCC-----eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEE
Q 011912 7 KLFIGGISW--DTNEDRLRDYFQAFGE-----VLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (475)
Q Consensus 7 ~LfVgnLP~--d~teedLke~F~~~G~-----V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V 77 (475)
+||| |+=+ .++..+|..++..... |-.|+|..+ |+||+-... .|++++ +++..+.+++|.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----E
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEE
Confidence 4555 3433 3788999999988643 456666664 799998765 556666 7888999999999
Q ss_pred eec
Q 011912 78 KKA 80 (475)
Q Consensus 78 ~~a 80 (475)
+.|
T Consensus 72 e~A 74 (74)
T PF03880_consen 72 ERA 74 (74)
T ss_dssp EE-
T ss_pred EEC
Confidence 865
No 205
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=89.11 E-value=0.37 Score=43.17 Aligned_cols=118 Identities=13% Similarity=0.013 Sum_probs=76.3
Q ss_pred EEEcCC-C-CCCcHHHHHHHHhh-cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCCC
Q 011912 8 LFIGGI-S-WDTNEDRLRDYFQA-FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 8 LfVgnL-P-~d~teedLke~F~~-~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~~ 83 (475)
..|+.+ . .+.+.+.|++.+.+ +.....+.+..- ..++..++|.+++++++++ .....+.+..+.++...+.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 444444 2 34677777777766 344334444442 1257899999999999999 5556677777777766543
Q ss_pred cchhccccCCCCCCCCCCCCCcceeeecCCCCC-CCHHHHHHHHhhcCceeeEEEeec
Q 011912 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLAST-VTESDFKKYFDQFGIITDVVVMYD 140 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~-~teedL~~~F~~~G~I~~v~I~~d 140 (475)
....... .....-=|.|.+||.. .+++-|+++.+.+|++.+++....
T Consensus 93 ~~~~~~~----------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 93 FNPSEVK----------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ccccccc----------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 2211100 0011233667899998 777889999999999998876543
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.88 E-value=1.7 Score=43.46 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=52.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCe-EEEEeecCCC
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGR-TVEAKKAVPR 83 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr-~v~V~~a~~~ 83 (475)
.=|-|-++|+. .-.-|..+|++||+|++.+... ++ -+-.|.|.+..+|+||| ++...|++. .|-|+.+..+
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 34455566654 3456778999999998766542 22 38899999999999999 888888875 4566665554
Q ss_pred cc
Q 011912 84 DD 85 (475)
Q Consensus 84 ~~ 85 (475)
..
T Consensus 271 sv 272 (350)
T KOG4285|consen 271 SV 272 (350)
T ss_pred HH
Confidence 43
No 207
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=88.48 E-value=0.83 Score=35.87 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=49.4
Q ss_pred HHHHHHHhhcC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEEEeecCCC
Q 011912 20 DRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 20 edLke~F~~~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~a~~~ 83 (475)
++|++.|...| +|.+|.-|+.+.+.++.-.-||+++...+ .+-+.+-..+.++.|+|++...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~-~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN-NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc-ccceeehHhhCCeEEEEecCCCC
Confidence 57888888877 78888888887777788889999988776 34456667788999999877543
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.33 E-value=3.3 Score=35.70 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=43.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCccc
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI 70 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i 70 (475)
...+-+--.|.-++-++|..+.+.+- .|+.++|++|. ..++=.++|+|.+.++|++.. .|++.+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 33444444555567777877777654 46677888874 235667999999999999988 444443
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.04 E-value=1.6 Score=45.90 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=53.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhc-CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAF-GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID 71 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~-G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~ 71 (475)
.+.|+|--+|.-++-.||..|...+ -.|.+|+|+||.. .++=..+|+|++.++|.... .|+..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 6789999999999999999999875 4588999999753 34456899999999999998 5555544
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.81 E-value=0.44 Score=53.40 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=65.4
Q ss_pred eeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-c--eeCCeEEEEEEccC
Q 011912 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H--ELNGKMVEVKRAVP 183 (475)
Q Consensus 107 ~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~--~l~Gr~i~V~~a~~ 183 (475)
+..+.|.+-..+-.-|..+|.+||.|..++.+++.+ .|.|+|.+.+.|..|++.+. + ...|-+.+|.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 456777888888999999999999999999998866 79999999999999999877 4 45677899999988
Q ss_pred CCCCCC
Q 011912 184 KELSPG 189 (475)
Q Consensus 184 k~~~~~ 189 (475)
.+....
T Consensus 374 ~~~~ep 379 (1007)
T KOG4574|consen 374 LPMYEP 379 (1007)
T ss_pred cccccC
Confidence 776543
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.64 E-value=1.8 Score=34.23 Aligned_cols=58 Identities=26% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHhhcCc-----eeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 115 STVTESDFKKYFDQFGI-----ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 115 ~~~teedL~~~F~~~G~-----I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
..++..+|..++..... |-+|+|..+ |+||+-... .++++++.++ ..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788889888876543 445666533 899998654 6788888877 8999999999876
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.85 E-value=2.5 Score=33.00 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEE
Q 011912 16 DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (475)
Q Consensus 16 d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~ 76 (475)
.++-+|||.-|+.|. -.+|+.|+ | || ||.|.+.++|+++. .+...+....|.
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 478899999999995 34566665 3 55 89999999999999 455555444443
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.53 E-value=1.7 Score=41.00 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=42.4
Q ss_pred CcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--Hc--CcccCCeEEEEeecCCC
Q 011912 17 TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVEAKKAVPR 83 (475)
Q Consensus 17 ~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~--~~~i~gr~v~V~~a~~~ 83 (475)
-..++|+++|..+.++.++.+++.- .-..|.|.+.++|.+|. ++ ...+.+..+++..+...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3568999999999999888887752 24899999999999999 44 66889999999877443
No 214
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=85.93 E-value=1.2 Score=35.05 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=48.7
Q ss_pred HHHHHHHhhcC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcccCCeEEEEeecCC
Q 011912 20 DRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 20 edLke~F~~~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~a~~ 82 (475)
++|++.|.+.| +|..|.-|..+.+..+.-.-||+.+...+... |++-+.+.+++|.|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCcc
Confidence 57888888877 78888888887767777788999887765555 5677888999999987654
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.58 E-value=0.55 Score=51.40 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=60.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEc
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a 181 (475)
.+..++||.||-..|.++-++.++..||.|..+.++. |+|++|..+.....|+..+. ..++++.+.++..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4567899999999999999999999999988776542 89999999999999998887 7888988887663
No 216
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=85.29 E-value=12 Score=42.11 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=47.3
Q ss_pred ceeeec-CCCCCCCHHHHHHHHhhcCce-----eeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEE
Q 011912 106 KKIFVG-GLASTVTESDFKKYFDQFGII-----TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (475)
Q Consensus 106 ~~LfV~-nLp~~~teedL~~~F~~~G~I-----~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V 178 (475)
.++||. +--..++..+|-.++..-+.| -.|+|..+ |.||+... +.+++.++.+. ..+.+++|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 345552 333457888888777654434 44566533 78999854 44777777776 7899999999
Q ss_pred EEccCCC
Q 011912 179 KRAVPKE 185 (475)
Q Consensus 179 ~~a~~k~ 185 (475)
+.+....
T Consensus 558 ~~~~~~~ 564 (629)
T PRK11634 558 QLLGDAQ 564 (629)
T ss_pred EECCCCC
Confidence 9886443
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.49 E-value=6.3 Score=39.27 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=40.1
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcCce-eeEEEeecCCCCccceEEEEEecC-------HHHHHHHHHh
Q 011912 105 TKKIFVGGLASTVTESDFKKYFDQFGII-TDVVVMYDHNTQRPRGFGFITYDS-------EEAVDKVLLK 166 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G~I-~~v~I~~d~~tg~~kG~aFV~F~s-------~e~A~~Al~~ 166 (475)
..-|+|.||+.++.-.||+..+.+.+.+ ..+.+. -+++-||++|-+ .+++++++..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s 393 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKS 393 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhcc
Confidence 3469999999999999999999987654 333331 235679999965 3455555543
No 218
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=82.47 E-value=3.1 Score=35.95 Aligned_cols=115 Identities=21% Similarity=0.315 Sum_probs=62.0
Q ss_pred CCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCCCcchhcccc
Q 011912 13 ISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVPRDDQNIQNR 91 (475)
Q Consensus 13 LP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~~~~~~~~~~ 91 (475)
||+-+ ++|.++|+.=|+|.+|..+.. +.| .+|.--+ --...++++ |+|-..........+.
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtq-------------ypd-ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~g- 72 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQ-------------YPD-NDALLYVHGTLEQVDGN-IRIGSGQTPASVRIQG- 72 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEec-------------cCC-chhhheeeeehhhccCc-EEEccCCCcccEEEec-
Confidence 56554 468999999999998776553 221 1111111 111234444 5555443222211111
Q ss_pred CCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhh---cCceeeEEEeecCCCCccceEEEEEecCH
Q 011912 92 NNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQ---FGIITDVVVMYDHNTQRPRGFGFITYDSE 157 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~---~G~I~~v~I~~d~~tg~~kG~aFV~F~s~ 157 (475)
.+.....+| -|+.+|-.||+++|++ |--|++-.+.+|--..-+-..||..|...
T Consensus 73 ---------TPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 73 ---------TPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ---------CCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 112223333 4889999999999975 44455555555532222334788888654
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.97 E-value=4.3 Score=42.81 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=55.0
Q ss_pred cceeeecCCCCCCCHHHHHHHHhhcC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeC
Q 011912 105 TKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN 172 (475)
Q Consensus 105 ~~~LfV~nLp~~~teedL~~~F~~~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~ 172 (475)
...|.|-.+|..+|-.||..|...+- .|.+++|++|.. ..+=.++|+|.+.++|+...+..| +.|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999997654 689999999754 345578999999999999998777 5444
No 220
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=81.18 E-value=2.6 Score=33.03 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=45.9
Q ss_pred HHHHHHHhhcC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEEEccCC
Q 011912 120 SDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184 (475)
Q Consensus 120 edL~~~F~~~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~k 184 (475)
++|++.|...| .|..|.-+..+.+.++--.-||+.+...+.++++.. +.|.+.+|+|+..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I--k~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI--KTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh--HhhCCeEEEEecCCCC
Confidence 57888888877 577777777776677777889998776554443322 6789999999877554
No 221
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=80.25 E-value=0.3 Score=54.82 Aligned_cols=29 Identities=14% Similarity=0.446 Sum_probs=24.7
Q ss_pred CcCcEEEEcCCCCCC-cHHHHHHHHhhcCC
Q 011912 3 MELGKLFIGGISWDT-NEDRLRDYFQAFGE 31 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~-teedLke~F~~~G~ 31 (475)
..+|+|+|..||.++ ++++|+++|.+...
T Consensus 206 ~ssRTvlis~LP~~~~~~e~L~~~~~kl~~ 235 (827)
T COG5594 206 LSSRTVLISGLPSELRSDEELKELFDKLKV 235 (827)
T ss_pred CCCceEEeecCChhhcCchhHHHHHhhcCe
Confidence 367999999999996 78889999998743
No 222
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=79.37 E-value=1.2 Score=41.41 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=39.9
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhc-CceeeEEEeecCCC-CccceEEEEEecCHHHHHHHHHhcCc
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQF-GIITDVVVMYDHNT-QRPRGFGFITYDSEEAVDKVLLKTFH 169 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~-G~I~~v~I~~d~~t-g~~kG~aFV~F~s~e~A~~Al~~~~~ 169 (475)
..+++|.. .|+++|.++.+=- +.+..|.+-+..+. -..+|-.||+|.+.+.+.+.++....
T Consensus 110 ~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~ 172 (205)
T KOG4213|consen 110 KERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEE 172 (205)
T ss_pred HHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhh
Confidence 34566665 4555555444321 67777766544321 26789999999999999998877553
No 223
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=78.27 E-value=3.8 Score=32.22 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=46.1
Q ss_pred HHHHHHHhhcC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEccC
Q 011912 120 SDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (475)
Q Consensus 120 edL~~~F~~~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~~ 183 (475)
++|++.|+++| .+..+.-+..+.+..+-..-+|+.....+... .++ +.|.+++|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 57889999988 57778777777777788888999877654444 334 688999999987644
No 224
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=72.96 E-value=5.1 Score=40.62 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=38.1
Q ss_pred EEEEEcCHHHHHHHHHcCcccCCeEEEEeecCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhh
Q 011912 50 GFIVFADPAVAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQ 128 (475)
Q Consensus 50 aFVeF~s~e~A~~Al~~~~~i~gr~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~ 128 (475)
|||.|+++++|+.|++..+..+.+.++++.|.+. +-|.-.||..+..+..+|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP----------------------~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEP----------------------DDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCc----------------------ccccccccCCChHHHHHHHHHHH
Confidence 7999999999999995444444455566655432 33666777666666666655543
No 225
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.48 E-value=10 Score=39.55 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=46.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHHhhcCce-eeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011912 104 RTKKIFVGGLASTVTESDFKKYFDQFGII-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 104 ~~~~LfV~nLp~~~teedL~~~F~~~G~I-~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
-.+.|-|-++|.....+||...|+.|+.- .+|.++.|. .||-.|++...|..||-.-+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 34678899999999999999999999753 445555443 69999999999999996533
No 226
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=71.49 E-value=22 Score=27.70 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEE
Q 011912 116 TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (475)
Q Consensus 116 ~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~ 177 (475)
.++-+|||..|.+|.- .+|+.|+ + | =||.|.+.++|+++....+ ..+-..+|.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 4788999999999963 3444443 2 2 4899999999999999887 555555544
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=68.60 E-value=6.8 Score=34.06 Aligned_cols=47 Identities=11% Similarity=0.343 Sum_probs=28.2
Q ss_pred CCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecC-HHHHHHHHHh
Q 011912 117 VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLLK 166 (475)
Q Consensus 117 ~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s-~e~A~~Al~~ 166 (475)
++-++|++.|..|..+ +++.+.++. -.+++++|+|.. -.-...|++.
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 3458999999999876 466666654 568899999955 4444455443
No 228
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.44 E-value=10 Score=39.51 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=45.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCe-eEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHcCcc
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEV-LEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHM 69 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V-~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~~~~ 69 (475)
.+.|-|.++|.....+||...|+.|..- -+|+.+.|. .||-+|.+...|..||.-+|.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~ 449 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHD 449 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCc
Confidence 4678899999999999999999998752 234445553 799999999999999933443
No 229
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=65.45 E-value=17 Score=36.11 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=29.6
Q ss_pred CCCcceeeecCCCCC------------CCHHHHHHHHhhcCceeeEEEee
Q 011912 102 PARTKKIFVGGLAST------------VTESDFKKYFDQFGIITDVVVMY 139 (475)
Q Consensus 102 ~~~~~~LfV~nLp~~------------~teedL~~~F~~~G~I~~v~I~~ 139 (475)
.....+||+..||-. .+++.|+..|+.||.|..|.|+.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 345567888888853 45678999999999998888764
No 230
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=64.78 E-value=4.7 Score=45.63 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=56.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcc--cCCeEEEEeecC
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHM--IDGRTVEAKKAV 81 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~--i~gr~v~V~~a~ 81 (475)
.+.++-|.+...+-.-|-.+|.+||+|.+++.+++- -.|.|+|.+.|.|..|+ +.+++ +.+-+.+|..++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 355667777888899999999999999999999985 26999999999999988 44333 235566676665
Q ss_pred CCc
Q 011912 82 PRD 84 (475)
Q Consensus 82 ~~~ 84 (475)
..+
T Consensus 373 ~~~ 375 (1007)
T KOG4574|consen 373 TLP 375 (1007)
T ss_pred ccc
Confidence 544
No 231
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.71 E-value=18 Score=36.36 Aligned_cols=80 Identities=16% Similarity=0.269 Sum_probs=61.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecC-------CCCccceEEEEEecCHHHHHH----HHHhcC---
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH-------NTQRPRGFGFITYDSEEAVDK----VLLKTF--- 168 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~-------~tg~~kG~aFV~F~s~e~A~~----Al~~~~--- 168 (475)
-.++.|.+.||..+++-.++.+.|.+|++|+.|.++.+. +..+..-...+.|-+.+.+.. .|+.+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999998765 112334478899988775543 333333
Q ss_pred ceeCCeEEEEEEcc
Q 011912 169 HELNGKMVEVKRAV 182 (475)
Q Consensus 169 ~~l~Gr~i~V~~a~ 182 (475)
+.|+-..|+|.+..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 57888888888765
No 232
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=58.04 E-value=74 Score=25.54 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHH-hhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEE
Q 011912 112 GLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (475)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~ 179 (475)
-+|..+.-+||++.. ..||...++....+ .-.|-..+.++.++|++.++..-.-+.|+|-
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~s~~~ksLRil 75 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDRSPHMKSLRIL 75 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHccCccccceeEe
Confidence 467888888888777 57998888766533 2678889999999999998864444555543
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=58.00 E-value=14 Score=32.14 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=31.7
Q ss_pred EEEEcCCCCCC---------cHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcC-HHHHHHHH
Q 011912 7 KLFIGGISWDT---------NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD-PAVAERVV 64 (475)
Q Consensus 7 ~LfVgnLP~d~---------teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s-~e~A~~Al 64 (475)
.+.|-|+|... +-++|++.|+.|.+++ ++.+..+. -++++++|+|.. ..--..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 56778886543 5578999999998875 56656542 578999999965 44455555
No 234
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=57.16 E-value=12 Score=34.95 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=36.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCC--CcccEEEEEEcCHHHHHHHH
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATG--RARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG--~srG~aFVeF~s~e~A~~Al 64 (475)
.+++|.. |.+...++|.++.+ ++++.|.+.+.. .+ ..+|-.||.|.+.++|.+++
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~ 167 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFAND 167 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhh
Confidence 3455555 33344445555555 677777765543 23 56789999999999999887
No 235
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=56.90 E-value=9.6 Score=35.64 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=49.4
Q ss_pred eeeecCCCCCCC-----HHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCe-EEEEE
Q 011912 107 KIFVGGLASTVT-----ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK-MVEVK 179 (475)
Q Consensus 107 ~LfV~nLp~~~t-----eedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr-~i~V~ 179 (475)
.|.+.+|+..+- ..+.+.+|.++-+.....+++ +.+...|-|.+++.|..|..++. ..|.++ .++.-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 355555555532 234556666665554444443 23467799999999999999988 799998 88888
Q ss_pred EccCCC
Q 011912 180 RAVPKE 185 (475)
Q Consensus 180 ~a~~k~ 185 (475)
+|.+..
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 887643
No 236
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=54.73 E-value=29 Score=27.93 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=40.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011912 7 KLFIGGISWDTNEDRLRDYFQA-FG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 7 ~LfVgnLP~d~teedLke~F~~-~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
.-|+=.++.+.+..||++.++. |+ +|..|..+..+. + .--|||.+...+.|.++-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 3455558899999999999998 44 567777666542 2 224999999888887654
No 237
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=54.30 E-value=48 Score=29.51 Aligned_cols=123 Identities=15% Similarity=0.056 Sum_probs=53.8
Q ss_pred cEEEEcCCC----CCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEE-EcCHHHHHHHH-HcCcccCCeEEEEee
Q 011912 6 GKLFIGGIS----WDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIV-FADPAVAERVV-MQKHMIDGRTVEAKK 79 (475)
Q Consensus 6 ~~LfVgnLP----~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVe-F~s~e~A~~Al-~~~~~i~gr~v~V~~ 79 (475)
..+|+++|. ..+.-+||+++|++.| ..+|+-.-. + |-.+++ =.++++.++.| .......+..+.|-.
T Consensus 4 yiaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~--S----GNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~v 76 (137)
T PF08002_consen 4 YIALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQ--S----GNVVFESDRDPAELAAKIEKALEERFGFDVPVIV 76 (137)
T ss_dssp EEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETT--T----TEEEEEESS-HHHHHHHHHHHHHHH-TT---EEE
T ss_pred EEEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEe--e----CCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 457888884 4588999999999998 566654442 2 333333 22333333333 222233344444432
Q ss_pred cCCCcchhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEe
Q 011912 80 AVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVM 138 (475)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~ 138 (475)
-...+.......+..... .....++++|.-|....+.+++.++-..-...+++.+.
T Consensus 77 rs~~el~~i~~~nPf~~~---~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~~ 132 (137)
T PF08002_consen 77 RSAEELRAIIAANPFPWE---AEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRVG 132 (137)
T ss_dssp EEHHHHHHHHTT--GGGG---S----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE-
T ss_pred eeHHHHHHHHHHCCCccc---ccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEEe
Confidence 222222222111111100 12345778888888888888888887665555555553
No 238
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=53.47 E-value=91 Score=24.91 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=40.0
Q ss_pred eeecCCCCCCCHHHHHHHHhh-------cCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011912 108 IFVGGLASTVTESDFKKYFDQ-------FGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 108 LfV~nLp~~~teedL~~~F~~-------~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
|-.++||..+|.+||.+...+ +-.|..++...+.+. .|-||+.+=.++|+++++.++..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~--~k~~Cly~Ap~~eaV~~~~~~aG 68 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDD--GKIFCLYEAPDEEAVREHARRAG 68 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCC--CeEEEEEECCCHHHHHHHHHHcC
Confidence 456789999999999877754 333444444444332 25577777789999998887654
No 239
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=52.20 E-value=14 Score=37.31 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=26.4
Q ss_pred EEEEecCHHHHHHHHHhcCceeCCeEEEEEEccCCC
Q 011912 150 GFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185 (475)
Q Consensus 150 aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~~a~~k~ 185 (475)
|||+|+++++|+.|++... ..+.++++|+.|.+++
T Consensus 1 aFVtF~~~~~a~~~~q~~~-~~~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL-SKRPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHh-cCCCCCceEeeCCCcc
Confidence 7999999999999998654 3334666888875443
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=50.16 E-value=38 Score=27.74 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=39.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011912 8 LFIGGISWDTNEDRLRDYFQA-FG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 8 LfVgnLP~d~teedLke~F~~-~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
-|+=-.+.+.+..+|++.++. |+ +|..|..+..+. +. --|||.+...+.|.++.
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~--KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GE--KKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cc--EEEEEEeCCCCcHHHHH
Confidence 344457889999999999998 44 577777776542 22 24999999988888765
No 241
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=48.21 E-value=21 Score=35.76 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=34.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHH
Q 011912 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPA 58 (475)
Q Consensus 6 ~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e 58 (475)
.-|+|.|||.|+--.||+..+.+.+-+ -..|... -+++-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 459999999999999999999987532 2223221 24567999997653
No 242
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=46.74 E-value=26 Score=37.10 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=36.8
Q ss_pred CCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEc--CHHHHHHHHHc--C--cccCCeEEEEeecC
Q 011912 16 DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFA--DPAVAERVVMQ--K--HMIDGRTVEAKKAV 81 (475)
Q Consensus 16 d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~--s~e~A~~Al~~--~--~~i~gr~v~V~~a~ 81 (475)
++.+.+|+++|+.+.....+.|+.++. -++..-+.|+ +.++|-.+|+. . ..+++..+.|....
T Consensus 7 ~~~~~~l~dvL~~la~~~g~NiVi~~~---V~g~Vtl~~~~v~~~~al~~Il~~~gl~~~~~gnvi~V~~~~ 75 (418)
T TIGR02515 7 NFQDIPVRTVLQVIAEFTNLNIVVSDS---VQGNITLRLKNVPWDQALDIILKSKGLDKRRDGNIIYIAPLD 75 (418)
T ss_pred EEeCCCHHHHHHHHHHHhCCeEEECCC---CcceEEEEEeCCCHHHHHHHHHHhCCCCEEEECCEEEEecHH
Confidence 445666777777766666666666532 2344555665 45677666632 2 23467777776543
No 243
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=45.21 E-value=11 Score=39.37 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=51.2
Q ss_pred CcceeeecCCCCCCCHH--------HHHHHHhh--cCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHH
Q 011912 104 RTKKIFVGGLASTVTES--------DFKKYFDQ--FGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165 (475)
Q Consensus 104 ~~~~LfV~nLp~~~tee--------dL~~~F~~--~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~ 165 (475)
..+.+|+.++....+.+ +|+.+|.. ++.+..+...+|.....++|..|++|...+.+++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 44678888888776655 99999999 6777888888887667889999999999999999984
No 244
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=44.76 E-value=34 Score=28.32 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=24.8
Q ss_pred EEEEecCHHHHHHHHHhcCc--eeCCeEEEEEE
Q 011912 150 GFITYDSEEAVDKVLLKTFH--ELNGKMVEVKR 180 (475)
Q Consensus 150 aFV~F~s~e~A~~Al~~~~~--~l~Gr~i~V~~ 180 (475)
|+|+|++++.|++.+++-.+ .++...++|+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 68999999999999987663 67777766654
No 245
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=43.41 E-value=64 Score=29.20 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=35.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHH
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQA-FG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERV 63 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~-~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~A 63 (475)
.+-+|+ +..+.+..+|++.++. |+ +|..|..+..+. +.- -|||.+....+|...
T Consensus 83 N~yvF~--Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFI--VDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEE--EcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHHHH
Confidence 344444 6788999999999998 43 466666655432 222 499999777765543
No 246
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.57 E-value=77 Score=25.48 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=39.5
Q ss_pred eeecCCCCCCCHHHHHHHHhh-cC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc
Q 011912 108 IFVGGLASTVTESDFKKYFDQ-FG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (475)
Q Consensus 108 LfV~nLp~~~teedL~~~F~~-~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~ 167 (475)
-|+-.++..++..||++.+|+ |+ .|..|..+.-+. .. --|||++...+.|...-.++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~--KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GE--KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHHhh
Confidence 444457889999999999987 44 466666555442 22 25999998877777765443
No 247
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.03 E-value=74 Score=26.04 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=39.9
Q ss_pred eecCCCCCCCHHHHHHHHhh-cC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc
Q 011912 109 FVGGLASTVTESDFKKYFDQ-FG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (475)
Q Consensus 109 fV~nLp~~~teedL~~~F~~-~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~ 167 (475)
|+-.++..++..||++.+|+ |+ .|..|..+.-+. +. --|||++...++|.....++
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cc--EEEEEEeCCCCcHHHHHHhh
Confidence 33346788999999999987 55 467776665543 22 25999999988888776554
No 248
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=41.25 E-value=1.8e+02 Score=25.37 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCc
Q 011912 115 STVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH 169 (475)
Q Consensus 115 ~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~ 169 (475)
..++++||+-+.++.+. +.+.|.+||+.++-
T Consensus 73 ~~i~~edI~lv~~q~gv------------------------s~~~A~~AL~~~~g 103 (115)
T PRK06369 73 VEIPEEDIELVAEQTGV------------------------SEEEARKALEEANG 103 (115)
T ss_pred CCCCHHHHHHHHHHHCc------------------------CHHHHHHHHHHcCC
Confidence 46899999999999763 46789999988763
No 249
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=41.00 E-value=9.6 Score=39.75 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=50.3
Q ss_pred CcEEEEcCCCCCCcHH--------HHHHHHhh--cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011912 5 LGKLFIGGISWDTNED--------RLRDYFQA--FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 5 ~~~LfVgnLP~d~tee--------dLke~F~~--~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
.+.+|+.++......+ +|..+|.. .+++..|...++......+|..|++|+..+.+++++
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4677888887765544 89999998 778888888888767788999999999999999988
No 250
>PF14893 PNMA: PNMA
Probab=41.00 E-value=22 Score=36.67 Aligned_cols=53 Identities=9% Similarity=0.288 Sum_probs=32.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhh----cCceeeEEEeecCCCCccceEEEEEecCH
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQ----FGIITDVVVMYDHNTQRPRGFGFITYDSE 157 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~----~G~I~~v~I~~d~~tg~~kG~aFV~F~s~ 157 (475)
...+.|.|.+||.+|+++||++.++. .|...-+..+..++.+ .-.|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccc
Confidence 34577999999999999999998864 3332211111122212 22688888543
No 251
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=40.21 E-value=23 Score=34.52 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=28.5
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhhcCCeeE
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLE 34 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~~G~V~~ 34 (475)
..+.+.||+-|||..+|++.|+++...++-+.+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 456789999999999999999999999985443
No 252
>PRK11901 hypothetical protein; Reviewed
Probab=39.96 E-value=43 Score=34.29 Aligned_cols=55 Identities=11% Similarity=0.251 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEE--EecCHHHHHHHHHhcCceeC
Q 011912 116 TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFI--TYDSEEAVDKVLLKTFHELN 172 (475)
Q Consensus 116 ~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV--~F~s~e~A~~Al~~~~~~l~ 172 (475)
...+++|++|.+++. +..+.|.+....++.. |..| .|.+.++|++|++.|...|.
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 456888999998885 4566666554445443 5544 68999999999999885543
No 253
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=39.57 E-value=40 Score=31.64 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=47.5
Q ss_pred cEEEEcCCCCCC-cH----HHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCe-EEEE
Q 011912 6 GKLFIGGISWDT-NE----DRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGR-TVEA 77 (475)
Q Consensus 6 ~~LfVgnLP~d~-te----edLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr-~v~V 77 (475)
..|.+.+|+.++ ++ .+.+.+|..|-+.+-..+++. .++.-|.|.+++.|.+|. ++...+.++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 458888888775 22 234556666665554445543 346779999999999998 666677776 6666
Q ss_pred eecCCC
Q 011912 78 KKAVPR 83 (475)
Q Consensus 78 ~~a~~~ 83 (475)
-.+.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 555443
No 254
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.99 E-value=6.9 Score=42.36 Aligned_cols=66 Identities=3% Similarity=0.045 Sum_probs=47.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
..++.|||+|++++++-++|+.++..+-.+.++.+-.+....+..-+..|+|+---.++.|+..++
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 356789999999999999999999988766666554443333445578999977555555555544
No 255
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=38.59 E-value=1.1e+02 Score=30.12 Aligned_cols=29 Identities=17% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhcC
Q 011912 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFG 30 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~G 30 (475)
||...++.|++ |+..++++-|+-|.+++|
T Consensus 154 ~Dh~nr~aY~~-lS~Rad~~lLe~fc~~~g 182 (318)
T COG4874 154 MDHPNRTAYAG-LSQRADRELLEVFCEQIG 182 (318)
T ss_pred ecccchhhhhh-hhcccCHHHHHHHHHHcC
Confidence 46667888885 898999988888888877
No 256
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=38.45 E-value=1.3e+02 Score=22.19 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=39.9
Q ss_pred eeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCH----HHHHHHHHhcC
Q 011912 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSE----EAVDKVLLKTF 168 (475)
Q Consensus 107 ~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~----e~A~~Al~~~~ 168 (475)
+|.|.++.-.--...|++.+.+.--|.++.+-... ..+-|+|+.. +++.++|+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHhC
Confidence 35566666666677899999888778888775443 2688888643 77888887764
No 257
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=37.93 E-value=1.1e+02 Score=32.19 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=28.7
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHHhhc----CCeeEEEEEec
Q 011912 5 LGKLFIGGISWD-TNEDRLRDYFQAF----GEVLEAVIMKD 40 (475)
Q Consensus 5 ~~~LfVgnLP~d-~teedLke~F~~~----G~V~~v~i~~d 40 (475)
..+|-|-||.|+ +...+|...|+.| |+|..|.|...
T Consensus 146 tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 146 TKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred ccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 568889999998 6788898888876 56777777665
No 258
>PF14893 PNMA: PNMA
Probab=37.39 E-value=24 Score=36.37 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=31.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhh-cCCeeEEEEEe---cCCCCCcccEEEEEEcC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQA-FGEVLEAVIMK---DRATGRARGFGFIVFAD 56 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~-~G~V~~v~i~~---dk~tG~srG~aFVeF~s 56 (475)
.+-|.|.+||.+++|+||++.+.. +-++-...|+- .+.. ..--|+|||..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e 71 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAE 71 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeeccc
Confidence 467999999999999999998765 22222222221 1111 12358888874
No 259
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=34.85 E-value=1.9e+02 Score=23.81 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHc
Q 011912 19 EDRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66 (475)
Q Consensus 19 eedLke~F~~~G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~ 66 (475)
++.++++++++| +|+++.+..-+ .--...+++.|.+.|.++.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~ 66 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLA 66 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHH
Confidence 456788888875 67777776543 335788999999999888733
No 260
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=34.31 E-value=11 Score=28.37 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=23.2
Q ss_pred cceEEEEEecC-HHHHHHHHHhcCceeCCeEEEEEEcc
Q 011912 146 PRGFGFITYDS-EEAVDKVLLKTFHELNGKMVEVKRAV 182 (475)
Q Consensus 146 ~kG~aFV~F~s-~e~A~~Al~~~~~~l~Gr~i~V~~a~ 182 (475)
++||+||..++ .++.--.-+.++.-++|.++.|+...
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57899999987 33333334455567889999998876
No 261
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.68 E-value=11 Score=39.80 Aligned_cols=77 Identities=6% Similarity=-0.177 Sum_probs=56.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH--HcCcccCCeEEEEeecCC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V~~a~~ 82 (475)
+.+.|+..||..+++++|.-+|+.++.|.-+.+.+....+..+-.+||.-.+ +++..+| +..+.+.+.++++..+..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 4567899999999999999999999988877776655445555678887664 4555666 555666677776665543
No 262
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.15 E-value=86 Score=24.22 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=15.7
Q ss_pred HHHHHHHHhhcCCeeEEEEE
Q 011912 19 EDRLRDYFQAFGEVLEAVIM 38 (475)
Q Consensus 19 eedLke~F~~~G~V~~v~i~ 38 (475)
-++|+++|+++|+|.-+.|-
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36899999999998755543
No 263
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=32.60 E-value=1.1e+02 Score=33.94 Aligned_cols=92 Identities=11% Similarity=0.242 Sum_probs=54.8
Q ss_pred cEEEEEEcCHHHHHHHH--HcCcccCCeEEEE---eecCCCcchhcc--ccCCCCCCCCCCCCCcceeeecCCCCCCCHH
Q 011912 48 GFGFIVFADPAVAERVV--MQKHMIDGRTVEA---KKAVPRDDQNIQ--NRNNSSIHGSPGPARTKKIFVGGLASTVTES 120 (475)
Q Consensus 48 G~aFVeF~s~e~A~~Al--~~~~~i~gr~v~V---~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~LfV~nLp~~~tee 120 (475)
=-|||.+.+++..+-.. ++...+..-.|+- .++.+.+++-.+ .++.......|+...+..||+.+|..++.++
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 35899988876655333 3333333333331 222222222221 1222233334566678899999999999999
Q ss_pred HHHHHHhhcCceeeEEEee
Q 011912 121 DFKKYFDQFGIITDVVVMY 139 (475)
Q Consensus 121 dL~~~F~~~G~I~~v~I~~ 139 (475)
--.++....--++.++|++
T Consensus 317 VQ~~~irsipGlEna~i~r 335 (621)
T COG0445 317 VQEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHHhCcccccceeec
Confidence 8888888776678888874
No 264
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=31.75 E-value=2.4e+02 Score=21.99 Aligned_cols=61 Identities=13% Similarity=0.331 Sum_probs=39.0
Q ss_pred CCCCCCCHHHHHHHHh-hcCce-eeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEE
Q 011912 112 GLASTVTESDFKKYFD-QFGII-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178 (475)
Q Consensus 112 nLp~~~teedL~~~F~-~~G~I-~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V 178 (475)
.||..++-++|++... +|... ..+.|....+.+ -+|...+.++.+.|++.... ...+.|+|
T Consensus 16 ~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~~-~~~~~l~l 78 (81)
T smart00666 16 SVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYDS-LGSKKLRL 78 (81)
T ss_pred EECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHHH-cCCceEEE
Confidence 4677899999988774 45532 244444433222 38999999999999987641 11344544
No 265
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=31.11 E-value=5.4e+02 Score=26.65 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=33.9
Q ss_pred cCcEEEEcCCCC----CCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHH
Q 011912 4 ELGKLFIGGISW----DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAER 62 (475)
Q Consensus 4 d~~~LfVgnLP~----d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~ 62 (475)
+.+-|||.|=.- -++.+||+++.+.... .+.|+.|. ||++|.. +++..
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvDE--------AY~eF~~-~~~~~ 196 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVIDE--------AYIEFSP-ESSLE 196 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEeC--------chhhcCC-chhhh
Confidence 467788886322 2689999999998866 45555663 9999999 43333
No 266
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=30.17 E-value=1.4e+02 Score=25.54 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=34.3
Q ss_pred CHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011912 118 TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 118 teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
-+.+|.+++.++| |.+-.|..|..+. .=|+++++.|.++.-++|....
T Consensus 25 vWPE~~a~lk~ag-i~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~a~~e 72 (105)
T COG3254 25 VWPELLALLKEAG-IRNYSIFLDEEEN--LLFGYWEYEDFEADMAKMAETE 72 (105)
T ss_pred ccHHHHHHHHHcC-CceeEEEecCCcc--cEEEEEEEcChHHHHHHHhCCH
Confidence 4578899999998 5666777665433 4499999997776666665543
No 267
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.93 E-value=1.2e+02 Score=27.54 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011912 112 GLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 112 nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
.|+..+.++.|.++.+-+|.|.+.. -.| -.+.|-+.+.+++||+...
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 4788899999999999999998775 223 3467889999999997653
No 268
>PHA00019 IV phage assembly protein
Probab=29.03 E-value=2.6e+02 Score=29.69 Aligned_cols=29 Identities=7% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCCCcHHHHHHHHhhcCCeeEEEEEecC
Q 011912 13 ISWDTNEDRLRDYFQAFGEVLEAVIMKDR 41 (475)
Q Consensus 13 LP~d~teedLke~F~~~G~V~~v~i~~dk 41 (475)
+|.++.+.+|+++|.-++++..+.++.++
T Consensus 24 ~~l~f~~~dI~~vl~~la~~~g~NiVidp 52 (428)
T PHA00019 24 LPVELNNSPIREFVSWYSQQTGKSVVLGP 52 (428)
T ss_pred eEEEecCCCHHHHHHHHHHhcCceEEECC
Confidence 45567788899999988888888888765
No 269
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.90 E-value=41 Score=23.05 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=10.6
Q ss_pred CCCcHHHHHHHHhhcC
Q 011912 15 WDTNEDRLRDYFQAFG 30 (475)
Q Consensus 15 ~d~teedLke~F~~~G 30 (475)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998764
No 270
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=28.48 E-value=2.1e+02 Score=24.15 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=27.7
Q ss_pred CCcHHHHHHHHhh-cCCeeEEEEEecCCC----CCcccEEEEEEcCHHHHHHH
Q 011912 16 DTNEDRLRDYFQA-FGEVLEAVIMKDRAT----GRARGFGFIVFADPAVAERV 63 (475)
Q Consensus 16 d~teedLke~F~~-~G~V~~v~i~~dk~t----G~srG~aFVeF~s~e~A~~A 63 (475)
..+..||++-+.. ++.=.+..|+..-.| ++++|||.| |.+.+.|.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 4678888876655 553334444333223 467777777 6777776653
No 271
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.43 E-value=2.5e+02 Score=20.91 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=31.5
Q ss_pred CHHHHHHHHhhcCc-eeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC
Q 011912 118 TESDFKKYFDQFGI-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (475)
Q Consensus 118 teedL~~~F~~~G~-I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~ 168 (475)
.-.+|-++|.+.+. |+.+.+....+ +..-.|.+++.+.+.++|+...
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~~G 61 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKEAG 61 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHHCC
Confidence 44678888887774 66666544322 3566667788888888887765
No 272
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=28.35 E-value=3.2e+02 Score=28.10 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=30.2
Q ss_pred eeeecCCCCCCCHHHHH---HHHhhcCceeeEEEeecCCCCccceEEEEEe
Q 011912 107 KIFVGGLASTVTESDFK---KYFDQFGIITDVVVMYDHNTQRPRGFGFITY 154 (475)
Q Consensus 107 ~LfV~nLp~~~teedL~---~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F 154 (475)
..++.+||.++.+.+++ +++++. .+.++.|..+...+.+.|++.+.+
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEE
Confidence 46778999888876654 445552 234566666655567777776554
No 273
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=28.10 E-value=2.3e+02 Score=29.25 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcC
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQAFG 30 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~~G 30 (475)
..++|++-+-.|---+.|++-.++-|
T Consensus 81 ~~~~f~GsvG~Dk~ge~l~~~~~~aG 106 (343)
T KOG2854|consen 81 GATVFFGSVGKDKFGELLKSKARAAG 106 (343)
T ss_pred CceEEEeeccCchHHHHHHHHHHhcC
Confidence 37899998888888888888888777
No 274
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=28.06 E-value=7e+02 Score=27.13 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=61.3
Q ss_pred CCCcHHHHHHHHhhcCCeeEEEEEe--cCCCCCcccEEEEEEcC-----HHHHHHHHHcCcccCCeEEEEeecCCCcchh
Q 011912 15 WDTNEDRLRDYFQAFGEVLEAVIMK--DRATGRARGFGFIVFAD-----PAVAERVVMQKHMIDGRTVEAKKAVPRDDQN 87 (475)
Q Consensus 15 ~d~teedLke~F~~~G~V~~v~i~~--dk~tG~srG~aFVeF~s-----~e~A~~Al~~~~~i~gr~v~V~~a~~~~~~~ 87 (475)
..+.-+||++.+.++..|.++.++- +.........++|.+.+ .++..+.+... +
T Consensus 470 ~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~--L----------------- 530 (600)
T PRK08279 470 ENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYER--L----------------- 530 (600)
T ss_pred cccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhh--C-----------------
Confidence 4577899999999998898887743 22222234566666652 22222222110 0
Q ss_pred ccccCCCCCCCCCCCCCcceeeecCCCCC----CCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHH
Q 011912 88 IQNRNNSSIHGSPGPARTKKIFVGGLAST----VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163 (475)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~LfV~nLp~~----~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~A 163 (475)
+....+...++|..||.+ +...+|++++...-.|..+....|+.. . +++...++-.|+-+
T Consensus 531 -----------~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~ 594 (600)
T PRK08279 531 -----------PAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDPSKVDDPLYVLDPGS---G--GYVPLTAELYAEIA 594 (600)
T ss_pred -----------ccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCccccCCeeEEEecCC---C--ceEecCHHHHHHHh
Confidence 001123345666777766 455677666655545666555556532 2 44555555444433
No 275
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.39 E-value=50 Score=32.28 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=28.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHHhhcCceeeE
Q 011912 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDV 135 (475)
Q Consensus 103 ~~~~~LfV~nLp~~~teedL~~~F~~~G~I~~v 135 (475)
...++||+-|||..+|++.|+++..+++.+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345789999999999999999999999865443
No 276
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=26.35 E-value=1.4e+02 Score=23.37 Aligned_cols=63 Identities=19% Similarity=0.362 Sum_probs=41.3
Q ss_pred cCCCCCCCHHHHHHHHh-hcCce-eeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEEE
Q 011912 111 GGLASTVTESDFKKYFD-QFGII-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (475)
Q Consensus 111 ~nLp~~~teedL~~~F~-~~G~I-~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V~ 179 (475)
-.++..++.++|++..+ .|+.. ..+.|....+.+ -+|...+.++.+.|++..... ..+.|++.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dg-----D~V~i~sd~Dl~~a~~~~~~~-~~~~lrl~ 80 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDG-----DLVTISSDEDLQEAIEQAKES-GSKTLRLF 80 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTS-----SEEEESSHHHHHHHHHHHHHC-TTSCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCC-----CEEEeCCHHHHHHHHHHHHhc-CCCcEEEE
Confidence 34677788988888875 46653 445554432222 479999999999999887521 44455544
No 277
>PRK10905 cell division protein DamX; Validated
Probab=25.83 E-value=1e+02 Score=31.59 Aligned_cols=56 Identities=13% Similarity=0.264 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEE--EecCHHHHHHHHHhcCceeC
Q 011912 115 STVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFI--TYDSEEAVDKVLLKTFHELN 172 (475)
Q Consensus 115 ~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV--~F~s~e~A~~Al~~~~~~l~ 172 (475)
--.+++.|++|..+++ +....+......++.. |-.| .|.+.++|++|+++|..+|.
T Consensus 254 A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa~vQ 311 (328)
T PRK10905 254 SSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPADVQ 311 (328)
T ss_pred ecCCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCHHHH
Confidence 3466789999999886 4444444443334433 3333 68999999999999986554
No 278
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=25.61 E-value=3e+02 Score=31.12 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=36.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhh---cCCeeEEEEEecCCCCCcccEEE-EEEcCHHHHHHHH
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQA---FGEVLEAVIMKDRATGRARGFGF-IVFADPAVAERVV 64 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~---~G~V~~v~i~~dk~tG~srG~aF-VeF~s~e~A~~Al 64 (475)
.++|.|..||+.++.+.|.+.+.+ -++++ |.-++|. +.+ ...| |+++....++..+
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~-s~~--~v~i~i~l~~~~~~~~~~ 279 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDY-TAE--NVEIEIKLPRGVYASEVI 279 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeC-CCC--cEEEEEEECCCCCHHHHH
Confidence 478999999999999988887554 34554 5556664 322 3444 4555555555444
No 279
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=24.54 E-value=2e+02 Score=25.93 Aligned_cols=60 Identities=10% Similarity=0.172 Sum_probs=37.8
Q ss_pred CCCcCcEEEEcCCCCCCcHHHHHHHHhhc----C-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHc
Q 011912 1 MEMELGKLFIGGISWDTNEDRLRDYFQAF----G-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQ 66 (475)
Q Consensus 1 ~e~d~~~LfVgnLP~d~teedLke~F~~~----G-~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al~~ 66 (475)
|+.+..+.||=..- .=.|+++++.+.+. + +|.+|.+... .+||.||+....+++..++++
T Consensus 1 ~~~~~~~WYvv~t~-sG~E~~V~~~L~~~~~~~~~~i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~ 65 (153)
T PRK08559 1 MKPEMSMIFAVKTT-AGQERNVALMLAMRAKKENLPIYAILAPPE-----LKGYVLVEAESKGAVEEAIRG 65 (153)
T ss_pred CCCCCCcEEEEEeE-CChHHHHHHHHHHHHHhCCCcEEEEEccCC-----CCcEEEEEEEChHHHHHHHhc
Confidence 56666777775431 22366666655542 2 1445554443 579999999988888888843
No 280
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=24.27 E-value=11 Score=40.97 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=42.2
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 011912 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (475)
Q Consensus 4 d~~~LfVgnLP~d~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al 64 (475)
.+|.|||+||++.++-++|..+++.+--+..+-+.......+..-+.+|.|+---....|+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~ 290 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEAC 290 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHH
Confidence 3678999999999999999999998865555444333223344556788887544444444
No 281
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=24.12 E-value=81 Score=24.34 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=15.2
Q ss_pred HHHHHHHhhcCceeeEEE
Q 011912 120 SDFKKYFDQFGIITDVVV 137 (475)
Q Consensus 120 edL~~~F~~~G~I~~v~I 137 (475)
++||++|++.|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999876654
No 282
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=24.05 E-value=2.2e+02 Score=23.72 Aligned_cols=66 Identities=9% Similarity=0.212 Sum_probs=38.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhc--------CCeeEEEEEec-----CCCCCccc-EEEEEEcCHHHHHHHHHcCcccCC
Q 011912 7 KLFIGGISWDTNEDRLRDYFQAF--------GEVLEAVIMKD-----RATGRARG-FGFIVFADPAVAERVVMQKHMIDG 72 (475)
Q Consensus 7 ~LfVgnLP~d~teedLke~F~~~--------G~V~~v~i~~d-----k~tG~srG-~aFVeF~s~e~A~~Al~~~~~i~g 72 (475)
.+|| |.+++++++++++.+++ |+|.++...=. +..+..+| |.++.|..+.++-+.+.....++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~e 87 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLDE 87 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCCC
Confidence 4455 45777888777665554 45655552211 22345566 588999887777777744444444
Q ss_pred eE
Q 011912 73 RT 74 (475)
Q Consensus 73 r~ 74 (475)
.-
T Consensus 88 ~V 89 (97)
T CHL00123 88 NV 89 (97)
T ss_pred Ce
Confidence 33
No 283
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.93 E-value=5.5e+02 Score=23.29 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=36.1
Q ss_pred eeecCCCCCCCHHHHHHHHhh-cC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHH
Q 011912 108 IFVGGLASTVTESDFKKYFDQ-FG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165 (475)
Q Consensus 108 LfV~nLp~~~teedL~~~F~~-~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~ 165 (475)
-|+--++...+..||++.+|+ |+ .|..|..+.-+. +.. -|||++....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHH
Confidence 444457888999999999987 54 456665554433 222 59999977666444333
No 284
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=23.93 E-value=2.1e+02 Score=30.70 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=35.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhh---cCCeeEEEEEecCCCCCcccEEE-EEEcCHHHHHHH
Q 011912 5 LGKLFIGGISWDTNEDRLRDYFQA---FGEVLEAVIMKDRATGRARGFGF-IVFADPAVAERV 63 (475)
Q Consensus 5 ~~~LfVgnLP~d~teedLke~F~~---~G~V~~v~i~~dk~tG~srG~aF-VeF~s~e~A~~A 63 (475)
.++|.|..||..++.+++++.+.. -++|..+.-++|.. ....+..| |+++....++..
T Consensus 232 ~~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des-~~~~~vrivI~lk~~~~~~~~ 293 (445)
T smart00434 232 RNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDES-HDRTGVRIVIELKRGAMAEVV 293 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhcc-CCCCceEEEEEECCCcCHHHH
Confidence 368999999999999988887655 23444444444432 12245555 445544444433
No 285
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=23.92 E-value=1.8e+02 Score=30.45 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=35.6
Q ss_pred CcHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcC--HHHHHHHHHc--C--cccCCeEEEEeec
Q 011912 17 TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD--PAVAERVVMQ--K--HMIDGRTVEAKKA 80 (475)
Q Consensus 17 ~teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s--~e~A~~Al~~--~--~~i~gr~v~V~~a 80 (475)
+.+.+|+++|..+.++..+.++.++. -+|..=+.+.+ .++|-.+++. + ....+..+.|...
T Consensus 2 ~~~adI~~vl~~la~~~g~NiVidp~---V~G~VTl~~~~V~~~qal~~iL~~~gl~~~~~g~i~~I~p~ 68 (386)
T PRK10560 2 VDDVPVAQVLQALAEQEKLNLVVSPD---VSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQ 68 (386)
T ss_pred ccCCCHHHHHHHHHHhcCceEEECCC---CcceEEEEEeCCCHHHHHHHHHHhCCCcEEEeCCEEEEEch
Confidence 35667888888888888888877752 23445555543 4455444422 2 1234566666544
No 286
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=23.64 E-value=5.1e+02 Score=25.92 Aligned_cols=141 Identities=9% Similarity=0.061 Sum_probs=58.4
Q ss_pred CCcHHHHHHHHhhcCCeeEE-------EEEecCCCCCcccEEEEEEcCHHHHHHHHH----cCcccCCeEEEEeecCCCc
Q 011912 16 DTNEDRLRDYFQAFGEVLEA-------VIMKDRATGRARGFGFIVFADPAVAERVVM----QKHMIDGRTVEAKKAVPRD 84 (475)
Q Consensus 16 d~teedLke~F~~~G~V~~v-------~i~~dk~tG~srG~aFVeF~s~e~A~~Al~----~~~~i~gr~v~V~~a~~~~ 84 (475)
-.++++|.+.+...- |=-| .++.++..+ .+- ....|-++++|++++. ....+ ...++|....-..
T Consensus 62 AL~~~~V~~kL~~VP-VF~itn~~G~p~l~~~~~~~-~~~-v~~~F~s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~ 137 (274)
T PF04278_consen 62 ALPEEEVEEKLAGVP-VFTITNSQGEPVLVSGPDQG-GKS-VGLFFFSQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGK 137 (274)
T ss_dssp ---HHHHHHHHTTSE-EEEEE-TT--B-----TTS---SE-EEEEES-HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHH
T ss_pred cCCHHHHHHHhcCce-EEEEECCCCCEEEeccCCCC-Cce-EEEEEecHHHHHHHHHHHhhhCccc-cCceEEEEecHHH
Confidence 357899998887652 1111 112221111 233 3456779999999992 22222 2333333221111
Q ss_pred chhccccCCCCCCCCCCCCCcceeeecCCCCCCCHHHHHHHHhhcCce-e-----eEEEeec----CCCCccceEEEEEe
Q 011912 85 DQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGII-T-----DVVVMYD----HNTQRPRGFGFITY 154 (475)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~~G~I-~-----~v~I~~d----~~tg~~kG~aFV~F 154 (475)
..+..... ......|..+=+|....-+.-++++++-|.- . -|-+.+. -...+...--.-.|
T Consensus 138 vY~l~~~~---------~~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlF 208 (274)
T PF04278_consen 138 VYQLAQEN---------KKKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLF 208 (274)
T ss_dssp HHHHHHHT---------TT-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEE
T ss_pred HHHHHHHh---------hcCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEE
Confidence 11110000 0133456666667665555556665544431 1 1111111 00011112345567
Q ss_pred cCHHHHHHHHHhcCc
Q 011912 155 DSEEAVDKVLLKTFH 169 (475)
Q Consensus 155 ~s~e~A~~Al~~~~~ 169 (475)
=+.+++++++++...
T Consensus 209 F~kedL~~~l~k~~k 223 (274)
T PF04278_consen 209 FDKEDLQAALEKAKK 223 (274)
T ss_dssp SSHHHHHHHHHHHTT
T ss_pred ecHHHHHHHHHHHHH
Confidence 788999999988753
No 287
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.22 E-value=3.2e+02 Score=24.92 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=41.9
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhc---CCeeEEEEEecCCC---------CCccc-EEEEEEcCHHHHH
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAF---GEVLEAVIMKDRAT---------GRARG-FGFIVFADPAVAE 61 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~---G~V~~v~i~~dk~t---------G~srG-~aFVeF~s~e~A~ 61 (475)
.|..+|++..++.-++|++.++..++- .+++.|.+-+.+.+ ..-|. |-+|.|++-+...
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 355899999999999999999988774 45666666554432 12234 7788888765543
No 288
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=22.78 E-value=4.4e+02 Score=21.76 Aligned_cols=58 Identities=7% Similarity=0.201 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHhh-cCce--eeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCeEEEE
Q 011912 116 TVTESDFKKYFDQ-FGII--TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178 (475)
Q Consensus 116 ~~teedL~~~F~~-~G~I--~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr~i~V 178 (475)
+++-++|++...+ |... .++.|....+.+ -+|.+.+.++.+.|++.+...-+.+.|++
T Consensus 24 d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~~~~~~~~~lrl 84 (91)
T cd06398 24 DLNMDGLREKVEELFSLSPDADLSLTYTDEDG-----DVVTLVDDNDLTDAIQYFCSGSRLNPLRI 84 (91)
T ss_pred CCCHHHHHHHHHHHhCCCCCCcEEEEEECCCC-----CEEEEccHHHHHHHHHHHhccCCCceEEE
Confidence 5677776666644 3222 355554433333 48999999999999988643333344433
No 289
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.60 E-value=3.6e+02 Score=23.80 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=39.3
Q ss_pred CCHHHHHHHHhhcCce-eeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcCceeCCe-EEEEEEc
Q 011912 117 VTESDFKKYFDQFGII-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK-MVEVKRA 181 (475)
Q Consensus 117 ~teedL~~~F~~~G~I-~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~~~l~Gr-~i~V~~a 181 (475)
.+-+++++.+++-|.- +.+.. +.+ ...|.|++.|+-.+|.+.+...+... .|.+..+
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~--~~~------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITP--END------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEe--eCC------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 5678899999888743 33332 211 58899999999999988887666543 4554544
No 290
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=22.31 E-value=4e+02 Score=21.17 Aligned_cols=56 Identities=9% Similarity=0.170 Sum_probs=36.0
Q ss_pred EEcCCCCCCcHHHHHHHH-------hhcCCeeEEEEEecCCCCC-cccE---EEEEEcCHHHHHHHH
Q 011912 9 FIGGISWDTNEDRLRDYF-------QAFGEVLEAVIMKDRATGR-ARGF---GFIVFADPAVAERVV 64 (475)
Q Consensus 9 fVgnLP~d~teedLke~F-------~~~G~V~~v~i~~dk~tG~-srG~---aFVeF~s~e~A~~Al 64 (475)
.+-.|..+++++++++++ ..+..|+++.+-++..... .++| -+++|++.++-++-.
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 333588888888886544 3456688888777643322 3444 357899988887655
No 291
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=22.23 E-value=1.6e+02 Score=25.76 Aligned_cols=46 Identities=17% Similarity=0.430 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHhh-cCCeeEEEEEe----cCCCCCcccEEEEEEcCHHHHHH
Q 011912 16 DTNEDRLRDYFQA-FGEVLEAVIMK----DRATGRARGFGFIVFADPAVAER 62 (475)
Q Consensus 16 d~teedLke~F~~-~G~V~~v~i~~----dk~tG~srG~aFVeF~s~e~A~~ 62 (475)
.++.+||+|-+.+ |-.-.++.++. .--.+++.|||.| |.+.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5788899887776 32212222222 2224688999988 777777764
No 292
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.99 E-value=26 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=20.6
Q ss_pred CcCcEEEEcCCCCCCcHHHHHHHHhhc
Q 011912 3 MELGKLFIGGISWDTNEDRLRDYFQAF 29 (475)
Q Consensus 3 ~d~~~LfVgnLP~d~teedLke~F~~~ 29 (475)
+-.++|||+.||..+-+++=+.+++.+
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k~~ 51 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYKSL 51 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHHHH
Confidence 457899999999998777655555543
No 293
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=21.69 E-value=1.8e+02 Score=27.62 Aligned_cols=73 Identities=14% Similarity=0.298 Sum_probs=47.6
Q ss_pred CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEEEEeecCCCcchhccccCCCCCCCCCCCCCcceee
Q 011912 31 EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIF 109 (475)
Q Consensus 31 ~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Lf 109 (475)
.+.-|.+++++ +.|+++|+|.+.+ .+++.+..-.|.|....+.. +..+++||
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~V-----------------NE~TkkIY 88 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPSV-----------------NEQTKKIY 88 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHHhcchheeeeEEEecCCccc-----------------ccccceEE
Confidence 35556677776 5699999999999 77777777777776554432 23455565
Q ss_pred ec---------CCCCCCCHHHHHHHHhhcCc
Q 011912 110 VG---------GLASTVTESDFKKYFDQFGI 131 (475)
Q Consensus 110 V~---------nLp~~~teedL~~~F~~~G~ 131 (475)
|- |..++ .++.|.+..++|-+
T Consensus 89 ICPFTGKVF~DNt~~n-PQDAIYDWvSkCPe 118 (238)
T PF10915_consen 89 ICPFTGKVFGDNTHPN-PQDAIYDWVSKCPE 118 (238)
T ss_pred EcCCcCccccCCCCCC-hHHHHHHHHhhCCc
Confidence 53 33222 34568888888754
No 294
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.05 E-value=20 Score=37.93 Aligned_cols=76 Identities=7% Similarity=-0.176 Sum_probs=55.6
Q ss_pred ceeeecCCCCCCCHHHHHHHHhhcCceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhcC-ceeCCeEEEEEEcc
Q 011912 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (475)
Q Consensus 106 ~~LfV~nLp~~~teedL~~~F~~~G~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~i~V~~a~ 182 (475)
.+.|+..||...++.+|.-+|+.|+.|..+...+.-+.+-.+=.+||+-.+.+ +..+|..+. ..+.+.+++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~~-~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKAN-GPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeeccC-cccccCHHHHhhhhhhhhhhhcCc
Confidence 45678899999999999999999999988877665554555557788775543 455555554 56677777776654
No 295
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=20.95 E-value=70 Score=26.40 Aligned_cols=52 Identities=8% Similarity=0.175 Sum_probs=32.5
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEecCC----CCCc------ccEEEEEEcCHHH
Q 011912 8 LFIGGISWDTNEDRLRDYFQA-FG-EVLEAVIMKDRA----TGRA------RGFGFIVFADPAV 59 (475)
Q Consensus 8 LfVgnLP~d~teedLke~F~~-~G-~V~~v~i~~dk~----tG~s------rG~aFVeF~s~e~ 59 (475)
.|+=.++.+++..||+++++. |+ +|+.|..+.-+. .++. .--|+|++.+.+.
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 344457889999999999998 55 455666554320 1110 1247888876643
No 296
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=20.62 E-value=4.4e+02 Score=20.95 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=33.6
Q ss_pred eecCCCCCCCHHHHHHHHh-------hcCceeeEEEeecCCCCc-cce--EE-EEEecCHHHHHHHH
Q 011912 109 FVGGLASTVTESDFKKYFD-------QFGIITDVVVMYDHNTQR-PRG--FG-FITYDSEEAVDKVL 164 (475)
Q Consensus 109 fV~nLp~~~teedL~~~F~-------~~G~I~~v~I~~d~~tg~-~kG--~a-FV~F~s~e~A~~Al 164 (475)
.+-.|...+++++++++++ +.-.|+.+.+-++..... .++ ++ +++|++.++.++-.
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 3335777888888765543 344567777665543222 122 33 56899998876654
No 297
>PHA01632 hypothetical protein
Probab=20.12 E-value=99 Score=23.29 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=17.7
Q ss_pred eeecCCCCCCCHHHHHHHHhh
Q 011912 108 IFVGGLASTVTESDFKKYFDQ 128 (475)
Q Consensus 108 LfV~nLp~~~teedL~~~F~~ 128 (475)
|.|..+|...||++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456789999999999988865
No 298
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.10 E-value=1.5e+02 Score=32.24 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=42.9
Q ss_pred EEcCCCCCC---cHHHHHHHHhhcCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH-HcCcccCCeEE
Q 011912 9 FIGGISWDT---NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTV 75 (475)
Q Consensus 9 fVgnLP~d~---teedLke~F~~~G~V~~v~i~~dk~tG~srG~aFVeF~s~e~A~~Al-~~~~~i~gr~v 75 (475)
+|+||+.-. ....|.++-++||+|-.+++=..+ .|...+.+.|+.|+ .+...+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~---------~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVP---------VVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCce---------EEEECCHHHHHHHHHhCCccccCCCC
Confidence 355655433 345677777789999877775543 68889999999999 77788888875
No 299
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.09 E-value=4e+02 Score=21.80 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcC-ceeeEEEeecCCCCccceEEEEEecCHHHHHHHHHhc
Q 011912 119 ESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (475)
Q Consensus 119 eedL~~~F~~~G-~I~~v~I~~d~~tg~~kG~aFV~F~s~e~A~~Al~~~ 167 (475)
++.++++++++| +|+++.+.. ++-.-...+++.|.+.|.++....
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHH
Confidence 467888888876 577777664 334557889999998888766444
No 300
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=20.06 E-value=1.1e+02 Score=26.14 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=19.1
Q ss_pred CCcCcEEEEcCCCCCCcHHHHHHHHhh
Q 011912 2 EMELGKLFIGGISWDTNEDRLRDYFQA 28 (475)
Q Consensus 2 e~d~~~LfVgnLP~d~teedLke~F~~ 28 (475)
|.+.+.++++.|| |++|+++|++.
T Consensus 61 ekeg~~i~~g~lP---t~~eVe~Fl~~ 84 (105)
T PF09702_consen 61 EKEGNYIIVGYLP---TDEEVEDFLDD 84 (105)
T ss_pred cCCCCEEecCCCC---ChHHHHHHHHH
Confidence 5667889999999 77888888765
Done!