BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011913
         (475 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
           Lgtc
          Length = 311

 Score = 35.4 bits (80), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 271 RYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEA 330
           R+ S   + R  L +     +KVL  D DV+V+  L  LW+ D+    +GA         
Sbjct: 77  RHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGAC-------- 128

Query: 331 SFRRMDLFINFSDPLIAKKFDVKACTWAF--GMNLFDLQEWRKRKL 374
               +DLF+   +    +K  +    + F  G+ L +L++WR+  +
Sbjct: 129 ----IDLFVERQEGY-KQKIGMADGEYYFNAGVLLINLKKWRRHDI 169


>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
           With Mn And Udp-2f-Galactose
 pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
           With Donor And Acceptor Sugar Analogs
          Length = 311

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 15/106 (14%)

Query: 271 RYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEA 330
           R+ S   + R  L +     +KVL  D DV+V+  L  LW+ D+    +GA         
Sbjct: 77  RHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA--------- 127

Query: 331 SFRRMDLFINFSDPLIAKKFDVKACTWAF--GMNLFDLQEWRKRKL 374
               +DLF+   +    +K       + F  G+ L +L++WR+  +
Sbjct: 128 ---SIDLFVERQEGY-KQKIGXADGEYYFNAGVLLINLKKWRRHDI 169


>pdb|1OZP|A Chain A, Crystal Structure Of Rv0819 From Mycobacterium
           Tuberculosis Mshd- Mycothiol Synthase Acetyl-Coenzyme A
           Complex.
 pdb|1P0H|A Chain A, Crystal Structure Of Rv0819 From Mycobacterium
           Tuberculosis Mshd- Mycothiol Synthase Coenzyme A Complex
          Length = 318

 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 51  AYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKA 106
            YLN +PP      + EL +  +   R +G A   + L++ A R       TLD A
Sbjct: 66  GYLNLSPPRGAGGAMAELVVHPQSRRRGIGTAMARAALAKTAGRNQFWAHGTLDPA 121


>pdb|2C27|A Chain A, The Structure Of Mycothiol Synthase In Complex With Des-
           Acetylmycothiol And Coenzymea
          Length = 315

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 51  AYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKA 106
            YLN +PP      + EL +  +   R +G A   + L++ A R       TLD A
Sbjct: 63  GYLNLSPPRGAGGAMAELVVHPQSRRRGIGTAMARAALAKTAGRNQFWAHGTLDPA 118


>pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna
           Polymerase B1 From The Archaeon Sulfolobus Solfataricus
          Length = 847

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 13/68 (19%)

Query: 201 VVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNA 260
           V+ STV  A+E    V +  TDSL        FLLNPP  +   I       W+ T +N 
Sbjct: 601 VITSTVKKAREEGLTVLYGDTDSL--------FLLNPPKNSLENI-----IKWVKTTFNL 647

Query: 261 TLKKENSH 268
            L+ + ++
Sbjct: 648 DLEVDKTY 655


>pdb|2Y9Y|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase)
          Length = 374

 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 233 FLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVF----- 287
            LLNP  +   +  SIDN+      Y   L    S  P      +H R   P VF     
Sbjct: 1   MLLNPTKRERKENYSIDNY------YKDVLNTGRSSTP------SHPRMPKPHVFHSHQL 48

Query: 288 -PALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLI 346
            P   +VL     +      G +  +D      G +   +E +     + L +N S PL 
Sbjct: 49  QPPQLQVLYEKERMWTAKKTGYVPTMDDVKAAYGKISDQEEQKEKLELLKLSVNNSQPLT 108

Query: 347 AKKFDVKACTWAFGMNLFDLQEWRK 371
            ++  +KA   + G   ++  E+RK
Sbjct: 109 EEEEKMKADWESEGFTNWNKLEFRK 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,167,418
Number of Sequences: 62578
Number of extensions: 565715
Number of successful extensions: 1310
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 9
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)