Query 011913
Match_columns 475
No_of_seqs 300 out of 1465
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:36:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02829 Probable galacturonos 100.0 1E-128 3E-133 1021.6 39.9 443 29-474 175-638 (639)
2 PLN02910 polygalacturonate 4-a 100.0 3E-127 6E-132 1009.6 37.9 441 31-474 191-656 (657)
3 PLN02718 Probable galacturonos 100.0 3E-125 7E-130 998.0 40.5 473 2-474 118-602 (603)
4 PLN02742 Probable galacturonos 100.0 8E-125 2E-129 983.8 41.2 438 34-474 71-534 (534)
5 PLN02769 Probable galacturonos 100.0 1E-120 2E-125 967.2 38.0 434 31-474 175-629 (629)
6 PLN02523 galacturonosyltransfe 100.0 3E-111 6E-116 882.4 38.6 455 13-475 57-559 (559)
7 PLN02870 Probable galacturonos 100.0 7E-107 2E-111 846.8 31.8 405 61-474 88-531 (533)
8 PLN02867 Probable galacturonos 100.0 1E-105 2E-110 841.6 30.2 404 71-474 94-534 (535)
9 PLN02659 Probable galacturonos 100.0 5E-105 1E-109 833.3 32.6 405 61-474 88-532 (534)
10 cd06429 GT8_like_1 GT8_like_1 100.0 8.1E-57 1.8E-61 444.4 22.3 246 186-462 1-257 (257)
11 PRK15171 lipopolysaccharide 1, 100.0 3.8E-46 8.2E-51 381.7 22.7 263 183-468 23-292 (334)
12 cd06431 GT8_LARGE_C LARGE cata 100.0 5.8E-43 1.2E-47 350.0 22.7 262 187-470 4-277 (280)
13 cd00505 Glyco_transf_8 Members 100.0 7.4E-42 1.6E-46 335.4 22.1 237 186-446 1-245 (246)
14 cd04194 GT8_A4GalT_like A4GalT 100.0 3.5E-41 7.6E-46 330.1 20.4 238 186-447 1-248 (248)
15 COG1442 RfaJ Lipopolysaccharid 100.0 1.9E-40 4E-45 336.0 20.7 258 185-468 2-267 (325)
16 PF01501 Glyco_transf_8: Glyco 100.0 1.6E-37 3.4E-42 299.7 18.9 245 187-448 1-249 (250)
17 cd06430 GT8_like_2 GT8_like_2 100.0 1.6E-34 3.4E-39 289.9 22.5 252 186-464 1-276 (304)
18 cd06432 GT8_HUGT1_C_like The C 100.0 6.9E-34 1.5E-38 280.1 18.0 231 186-441 1-240 (248)
19 cd02537 GT8_Glycogenin Glycoge 100.0 2.3E-27 5E-32 232.5 20.3 217 190-461 6-237 (240)
20 PLN00176 galactinol synthase 99.9 1.8E-25 3.8E-30 227.6 21.5 244 186-462 23-292 (333)
21 cd06914 GT8_GNT1 GNT1 is a fun 99.8 2.2E-19 4.7E-24 179.2 17.7 143 271-450 75-243 (278)
22 KOG1879 UDP-glucose:glycoprote 99.3 1.2E-11 2.6E-16 139.8 9.5 257 181-462 1177-1444(1470)
23 COG5597 Alpha-N-acetylglucosam 98.4 1.4E-07 2.9E-12 94.1 2.0 154 276-450 155-341 (368)
24 PF03407 Nucleotid_trans: Nucl 96.0 0.037 8E-07 52.9 8.9 143 272-441 47-202 (212)
25 PLN03182 xyloglucan 6-xylosylt 95.6 0.12 2.5E-06 54.5 11.3 162 270-458 179-375 (429)
26 PF11051 Mannosyl_trans3: Mann 94.3 0.17 3.7E-06 50.8 8.2 108 188-313 4-114 (271)
27 PF05637 Glyco_transf_34: gala 92.3 0.08 1.7E-06 52.3 2.2 148 287-440 74-231 (239)
28 PLN03181 glycosyltransferase; 90.0 1.8 3.8E-05 46.1 9.3 126 270-419 180-327 (453)
29 PF03071 GNT-I: GNT-I family; 84.3 4.4 9.6E-05 43.5 8.7 119 183-311 92-213 (434)
30 cd02514 GT13_GLCNAC-TI GT13_GL 84.2 5.5 0.00012 41.5 9.1 115 186-311 2-119 (334)
31 cd02515 Glyco_transf_6 Glycosy 84.1 37 0.00081 34.3 14.5 199 183-418 33-247 (271)
32 COG4575 ElaB Uncharacterized c 83.0 5.4 0.00012 34.4 7.0 75 62-138 11-86 (104)
33 PF03414 Glyco_transf_6: Glyco 79.4 51 0.0011 34.4 13.8 203 183-417 98-311 (337)
34 KOG1950 Glycosyl transferase, 78.9 2.6 5.6E-05 44.2 4.6 152 287-447 122-288 (369)
35 TIGR02977 phageshock_pspA phag 76.9 9.4 0.0002 37.1 7.5 111 29-139 23-137 (219)
36 PRK10132 hypothetical protein; 74.9 18 0.00039 31.5 7.9 76 62-139 15-90 (108)
37 PF04012 PspA_IM30: PspA/IM30 68.8 19 0.00042 34.7 7.5 111 29-139 22-136 (221)
38 PRK10698 phage shock protein P 67.5 21 0.00046 34.9 7.5 110 29-138 23-136 (222)
39 KOG1928 Alpha-1,4-N-acetylgluc 67.2 2.7 5.9E-05 44.1 1.3 32 276-311 228-259 (409)
40 cd00761 Glyco_tranf_GTA_type G 64.4 66 0.0014 26.7 9.3 44 190-235 4-47 (156)
41 PF00535 Glycos_transf_2: Glyc 59.0 98 0.0021 26.4 9.7 95 192-312 7-102 (169)
42 PRK10807 paraquat-inducible pr 58.4 31 0.00068 38.3 7.6 43 87-133 473-515 (547)
43 COG1842 PspA Phage shock prote 56.9 35 0.00076 33.6 6.9 110 28-137 22-135 (225)
44 cd06439 CESA_like_1 CESA_like_ 56.3 1.4E+02 0.0031 28.2 11.2 103 184-312 29-133 (251)
45 cd04186 GT_2_like_c Subfamily 56.3 1.3E+02 0.0028 25.8 10.1 86 197-311 11-97 (166)
46 cd06423 CESA_like CESA_like is 55.6 1.2E+02 0.0025 25.9 9.5 33 196-230 10-42 (180)
47 cd04190 Chitin_synth_C C-termi 53.7 37 0.0008 32.9 6.6 24 288-311 72-96 (244)
48 PF10819 DUF2564: Protein of u 53.4 76 0.0017 26.1 7.0 69 66-135 6-78 (79)
49 cd06434 GT2_HAS Hyaluronan syn 52.4 1.5E+02 0.0032 27.7 10.4 96 187-312 3-101 (235)
50 cd04192 GT_2_like_e Subfamily 51.0 1.2E+02 0.0026 27.9 9.4 36 191-226 5-40 (229)
51 PF04765 DUF616: Protein of un 50.3 40 0.00088 34.7 6.3 95 213-324 90-189 (305)
52 PF05704 Caps_synth: Capsular 47.6 28 0.00061 35.1 4.8 97 180-311 42-143 (276)
53 PRK10404 hypothetical protein; 46.9 1E+02 0.0022 26.5 7.3 79 58-138 4-83 (101)
54 PF04488 Gly_transf_sug: Glyco 45.0 12 0.00025 31.7 1.3 35 272-310 62-97 (103)
55 cd04196 GT_2_like_d Subfamily 39.8 2E+02 0.0044 26.1 9.0 99 189-312 3-103 (214)
56 PF06103 DUF948: Bacterial pro 38.6 1E+02 0.0022 25.4 6.0 62 65-132 21-82 (90)
57 PF05957 DUF883: Bacterial pro 38.5 1.2E+02 0.0027 25.1 6.6 75 63-139 2-77 (94)
58 PF03314 DUF273: Protein of un 38.4 21 0.00045 34.9 2.0 24 282-305 34-57 (222)
59 PRK11204 N-glycosyltransferase 36.9 2.7E+02 0.0058 29.1 10.4 114 183-322 53-168 (420)
60 PF11464 Rbsn: Rabenosyn Rab b 36.6 54 0.0012 23.8 3.4 37 43-79 2-38 (42)
61 cd04185 GT_2_like_b Subfamily 36.2 2.9E+02 0.0062 25.1 9.4 18 289-306 79-96 (202)
62 PF06785 UPF0242: Uncharacteri 33.6 3.6E+02 0.0079 28.3 10.0 105 40-146 109-225 (401)
63 TIGR03469 HonB hopene-associat 32.8 4.3E+02 0.0093 27.6 11.0 111 184-311 40-156 (384)
64 COG0836 {ManC} Mannose-1-phosp 31.7 27 0.00058 36.2 1.7 24 349-372 186-209 (333)
65 PF10146 zf-C4H2: Zinc finger- 29.3 1.6E+02 0.0034 29.1 6.6 110 49-166 18-127 (230)
66 PF11380 DUF3184: Protein of u 28.0 1.6E+02 0.0035 32.9 6.8 25 288-312 99-126 (691)
67 cd06427 CESA_like_2 CESA_like_ 27.0 5.4E+02 0.012 24.3 9.9 46 186-231 3-49 (241)
68 PRK15383 type III secretion sy 26.6 32 0.00069 34.3 1.2 23 291-313 220-242 (335)
69 PRK15382 non-LEE encoded effec 26.5 32 0.0007 34.2 1.2 23 291-313 212-234 (326)
70 cd02510 pp-GalNAc-T pp-GalNAc- 26.4 3.9E+02 0.0085 26.4 9.1 101 188-311 2-106 (299)
71 PRK15384 type III secretion sy 26.2 32 0.00069 34.3 1.1 23 291-313 217-239 (336)
72 KOG4515 Uncharacterized conser 25.3 95 0.0021 29.7 3.9 37 15-54 76-112 (217)
73 cd04191 Glucan_BSP_ModH Glucan 25.0 3.7E+02 0.008 26.5 8.5 49 276-324 82-131 (254)
74 PF04508 Pox_A_type_inc: Viral 25.0 74 0.0016 20.1 2.1 18 65-82 3-20 (23)
75 PRK05454 glucosyltransferase M 24.8 2.1E+02 0.0045 32.9 7.4 119 185-324 125-256 (691)
76 TIGR03111 glyc2_xrt_Gpos1 puta 24.6 5E+02 0.011 27.6 10.0 47 184-230 49-96 (439)
77 PRK14583 hmsR N-glycosyltransf 24.3 5.8E+02 0.013 27.1 10.4 100 184-310 75-177 (444)
78 PF10153 DUF2361: Uncharacteri 23.9 1.8E+02 0.004 25.6 5.3 40 67-110 1-44 (114)
79 PRK14156 heat shock protein Gr 22.7 88 0.0019 29.7 3.3 46 36-81 40-96 (177)
80 PF14075 UBN_AB: Ubinuclein co 22.4 1.8E+02 0.0039 28.4 5.5 77 87-165 4-82 (214)
81 PRK12302 bssR biofilm formatio 21.4 5.6E+02 0.012 22.4 7.6 39 88-126 64-110 (127)
82 PHA01346 hypothetical protein 20.8 3.4E+02 0.0075 19.8 5.2 43 61-105 5-47 (53)
83 PLN02867 Probable galacturonos 20.7 3E+02 0.0065 30.7 7.2 74 61-136 91-166 (535)
84 KOG3958 Putative dynamitin [Cy 20.7 4E+02 0.0087 27.5 7.5 68 64-132 192-264 (371)
85 KOG4484 Uncharacterized conser 20.1 3.6E+02 0.0079 25.5 6.6 22 67-92 28-49 (199)
No 1
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=1.2e-128 Score=1021.61 Aligned_cols=443 Identities=55% Similarity=1.034 Sum_probs=429.4
Q ss_pred cccccCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhc
Q 011913 29 ASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASH 108 (475)
Q Consensus 29 ~~~~~~~~~~~~~~~d~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (475)
++...++|++||+|||||||||||++|||+++|++|+|||+++|||+||+|||++.|+|||+++.++|++|+++|++||+
T Consensus 175 ~~~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~ 254 (639)
T PLN02829 175 TDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQ 254 (639)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 34445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCccccchhhhccHHHHhcCcCCCCCcCCCCCCCCCceeE
Q 011913 109 VYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHY 188 (475)
Q Consensus 109 ~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~d~~~ihI 188 (475)
+++||+++++|||+|++++||++++||+|++|++||||+|+|||||||+||||+|||.+++..+++|+.++++||+.+|+
T Consensus 255 ~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy 334 (639)
T PLN02829 255 MQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHY 334 (639)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccCCChhhccCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred EEEcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCC-
Q 011913 189 AVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS- 267 (475)
Q Consensus 189 v~~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~- 267 (475)
|++|||+||++|||+|++.|+++|++++||||||++++.+|++||.+|++++++|+|.++++|+|++.+|+||++|+++
T Consensus 335 ~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~ 414 (639)
T PLN02829 335 ALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQ 414 (639)
T ss_pred EEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred --------------------CCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCc
Q 011913 268 --------------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKE 327 (475)
Q Consensus 268 --------------------~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~ 327 (475)
++++|+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||..
T Consensus 415 ~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~ 494 (639)
T PLN02829 415 SMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGE 494 (639)
T ss_pred hhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchh
Confidence 468999999999999999999999999999999999999999999999999999999976
Q ss_pred chhhHhhhhhccCCCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccce
Q 011913 328 SEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHT 407 (475)
Q Consensus 328 ~~~~~~r~~~~Ln~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i 407 (475)
.|+++..+++|++|.+..+|+++.||||+|||||||++||+++++++++.|++.+.+..+|++|++|+++++|+|++
T Consensus 495 ---~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlgaLPp~Ll~F~g~i 571 (639)
T PLN02829 495 ---SFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGTLPPGLITFWKRT 571 (639)
T ss_pred ---hhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCCccccccCCChHHHHhcCce
Confidence 67889999999999998899999999999999999999999999999999999888888999999999999999999
Q ss_pred eEecccccccccCCCCCCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCccccccccC
Q 011913 408 MALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH 474 (475)
Q Consensus 408 ~~Ld~~WN~~~lgy~~~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl~~c~~~ 474 (475)
++||++||++|+||++.+..+.+++|+||||+|++|||...++++|+++|.+|++++++||++||||
T Consensus 572 ~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~~Cni~ 638 (639)
T PLN02829 572 YPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNIN 638 (639)
T ss_pred EecChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHHhCCCC
Confidence 9999999999999998777788999999999999999999999999999999999999999999997
No 2
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=2.7e-127 Score=1009.56 Aligned_cols=441 Identities=52% Similarity=0.947 Sum_probs=428.6
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhccc
Q 011913 31 LLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVY 110 (475)
Q Consensus 31 ~~~~~~~~~~~~~d~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (475)
-..++|++||+|||||||||||++|||++||++|++||+++|||+||+|||++.|+|||+++.++|++||++|++||+++
T Consensus 191 ~~~~~d~~vk~lkDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~~l~~ak~~~ 270 (657)
T PLN02910 191 ESPNSDSILKLMRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQL 270 (657)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHhcc
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCccccchhhhccHHHHhcCcCCCCCcCCCCCCCCCceeEEE
Q 011913 111 PDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAV 190 (475)
Q Consensus 111 ~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~d~~~ihIv~ 190 (475)
+||+++++|||+||+++||++++||+|++|++||||+|+|||||||+||||+|||.+.+..+++|+.++++||+.+|+|+
T Consensus 271 ~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~i 350 (657)
T PLN02910 271 YDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKLEDPSLYHYAI 350 (657)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccCCChhhccCCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred EcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCC---
Q 011913 191 FSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS--- 267 (475)
Q Consensus 191 ~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~--- 267 (475)
+|||+||++|||+|++.|+++|++++||||||++|+.+|++||.+|++++++|+|.++++|+|++.+|+||++++++
T Consensus 351 fSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pvl~qles~~~ 430 (657)
T PLN02910 351 FSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSVLRQLESARI 430 (657)
T ss_pred EecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccccccccHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988655
Q ss_pred ----------------------CCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccC
Q 011913 268 ----------------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTC 325 (475)
Q Consensus 268 ----------------------~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~ 325 (475)
++|+|+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||
T Consensus 431 ~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc 510 (657)
T PLN02910 431 KEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETC 510 (657)
T ss_pred hhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCCceEEEeccc
Confidence 4588999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhhhhhccCCCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhcc
Q 011913 326 KESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYK 405 (475)
Q Consensus 326 ~~~~~~~~r~~~~Ln~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~ 405 (475)
.. .|+++..+++|++|.+.++|+++.||||+|||||||++||++++++.++.|++.+.+..+|++|+||+++++|+|
T Consensus 511 ~~---~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~dqgsLPpgLLvF~g 587 (657)
T PLN02910 511 KE---SFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWKLGSLPPGLITFYN 587 (657)
T ss_pred ch---hhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHHHHhcccccccccCCCChHHHHHhC
Confidence 86 678899999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred ceeEecccccccccCCCCCCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCccccccccC
Q 011913 406 HTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH 474 (475)
Q Consensus 406 ~i~~Ld~~WN~~~lgy~~~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl~~c~~~ 474 (475)
++++||++||++|+||++.+..+.+++|+||||+|++|||...++++|+++|.+|+++++|||++|||+
T Consensus 588 ~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~~W~kYl~~d~~fl~~Cni~ 656 (657)
T PLN02910 588 LTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAIAKYKPYWSRYVQYDNPYLQLCNIS 656 (657)
T ss_pred ceeecCchheecCCCCCcccccccccCcEEEEeCCCCCcccccCcccchHHHHHHccCCChHHHhCCCC
Confidence 999999999999999998887788999999999999999999999999999999999999999999997
No 3
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=3.2e-125 Score=997.97 Aligned_cols=473 Identities=72% Similarity=1.191 Sum_probs=450.3
Q ss_pred cccccCCCCCC------------CccccccccccCcccccccccCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHH
Q 011913 2 KQKTASSGSRG------------KDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELK 69 (475)
Q Consensus 2 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~y~~~~~~~~~~~~~~~~~ 69 (475)
+|+|..+++.+ +.+.|+...++.++.|+++.+++|++||+|||||||||||++|||+++|++|+|||+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~dql~~ak~y~~~a~~~~~~~~~~el~ 197 (603)
T PLN02718 118 SQKTTVSSSEEVQISARDIQLNHKTQFNPPTVKHEKNTRVQPRRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELR 197 (603)
T ss_pred hheeecccccccccchhhhhhhhhhccCCCcccccccCcCCcccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 57777777766 455667777999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccC
Q 011913 70 LRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTT 149 (475)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~ 149 (475)
++|||+||+||+++.|++||+++.++|++|+++|++||+++|||++|++|||||++++||++++||+|++|++||||+|+
T Consensus 198 ~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~ 277 (603)
T PLN02718 198 LRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTT 277 (603)
T ss_pred HHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhhccHHHHhcCcCCCCCcCCCCCCCCCceeEEEEcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHH
Q 011913 150 PKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAI 229 (475)
Q Consensus 150 Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~d~~~ihIv~~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~ 229 (475)
|||||||+||||+|||.+++..+++|+.++++||+.+|||+++||++++||+|+|++.|+.+|++++||||||+++++++
T Consensus 278 PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~~Hia~~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~m 357 (603)
T PLN02718 278 PKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVVFSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAI 357 (603)
T ss_pred CCCccccchhhHHHHhhCChhhccCCChhhccCCcceeEEEEcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHh
Q 011913 230 SMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRL 309 (475)
Q Consensus 230 ~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseL 309 (475)
+.|+.+++..+++|+|+++++|.|++.+|+++++++++.+++|+|+++|+||+||++||+++||||||+|+||++||++|
T Consensus 358 k~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL 437 (603)
T PLN02718 358 SMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRL 437 (603)
T ss_pred HHHHHhCCCCCcEEEEEecchhccccccchhhhhhccccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHH
Confidence 99999988889999999999999999888888888888888999999999999999999999999999999999999999
Q ss_pred hccCCCCCEEEEeccCCcchhhHhhhhhccCCCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCC
Q 011913 310 WNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRP 389 (475)
Q Consensus 310 w~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~ 389 (475)
|++||+|+++|||+||......+++++.++||++|++.++|+++.||||+|||||||++||++++++++++|++++.+..
T Consensus 438 ~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~ 517 (603)
T PLN02718 438 WSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRP 517 (603)
T ss_pred hcCCCCCcEEEEeccccccccchhhhhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCcc
Confidence 99999999999999997533345677788999999988899999999999999999999999999999999999987778
Q ss_pred CCCCCCchhhhhhhccceeEecccccccccCCCCCCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCcccc
Q 011913 390 LWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQ 469 (475)
Q Consensus 390 l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~lgy~~~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl~ 469 (475)
+|++|+||++|++|+|++++||++||++++||+..+....+++|+||||+|++|||.+.+++.|+++|.+|+++++|||+
T Consensus 518 l~dqdaLpp~LlvF~gri~~LD~rWNv~gLG~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~~l~ 597 (603)
T PLN02718 518 LWKAGSLPIGWLTFYNQTVALDKRWHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQ 597 (603)
T ss_pred ccCcccccHHHHHhcCceeecChHHhccCccccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCChHHH
Confidence 99999999999999999999999999999999887777788999999999999999999999999999999999999999
Q ss_pred ccccC
Q 011913 470 RCNLH 474 (475)
Q Consensus 470 ~c~~~ 474 (475)
+|||+
T Consensus 598 ~Cn~~ 602 (603)
T PLN02718 598 QCNIH 602 (603)
T ss_pred hcCCC
Confidence 99997
No 4
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=8.1e-125 Score=983.75 Aligned_cols=438 Identities=43% Similarity=0.785 Sum_probs=423.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHhccccCCCcc--cHHHHHHHHHHHHHHHHhhcccC
Q 011913 34 VSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDL--SRRAFRRMNQMEATLDKASHVYP 111 (475)
Q Consensus 34 ~~~~~~~~~~d~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 111 (475)
..|++||+|||||||||||++|||++||++|++||+++|||+||+||+++.|+++ |+++.++|+.|+++|++||++++
T Consensus 71 ~~~~~~~~l~dql~~Ak~y~~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~~~ 150 (534)
T PLN02742 71 SATSFSRQLADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDLHY 150 (534)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhccc
Confidence 5699999999999999999999999999999999999999999999999999887 37999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCccccchhhhccHHHHhcCcC---CCCCcCCCCCCCCCceeE
Q 011913 112 DCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPE---ERHLPNQQDLHNPDLHHY 188 (475)
Q Consensus 112 ~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~---~~~~~~~~~~~d~~~ihI 188 (475)
||+++++|||+|++++||++++|++|++|++||||+|+|||||||+||||+|||.+++. .++++++++++||+.+|+
T Consensus 151 d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy 230 (534)
T PLN02742 151 DSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDNNLYHF 230 (534)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999998866 577889999999999999
Q ss_pred EEEcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCC-
Q 011913 189 AVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS- 267 (475)
Q Consensus 189 v~~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~- 267 (475)
|++|||++|++|+|+|++.|+++|++++||||||..++.+|++||..+++++++++|+++++|.|++.+|+||++|+++
T Consensus 231 ~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~~~ 310 (534)
T PLN02742 231 CVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQDS 310 (534)
T ss_pred EEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred --------------------CCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCc
Q 011913 268 --------------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKE 327 (475)
Q Consensus 268 --------------------~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~ 327 (475)
++++|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||..
T Consensus 311 ~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~ 390 (534)
T PLN02742 311 DTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLE 390 (534)
T ss_pred hhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhh
Confidence 348999999999999999999999999999999999999999999999999999999976
Q ss_pred chhhHhhhhhccCCCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccce
Q 011913 328 SEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHT 407 (475)
Q Consensus 328 ~~~~~~r~~~~Ln~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i 407 (475)
.|++|..|+||+||.++++|+++.||||+|||||||++||++++++.++.|++.+.+..+|++|++|+++++|+|++
T Consensus 391 ---~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d~gaLpp~LLaF~g~~ 467 (534)
T PLN02742 391 ---TFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWKLGTLPPGLLTFYGLT 467 (534)
T ss_pred ---hhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhccccccccccccchHHHHHcCcc
Confidence 68899999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred eEecccccccccCCCCCCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCccccccccC
Q 011913 408 MALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH 474 (475)
Q Consensus 408 ~~Ld~~WN~~~lgy~~~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl~~c~~~ 474 (475)
++||++||+.|+||+.+++...+++|+||||+|++|||...++++|+++|++|+++++|||++||||
T Consensus 468 ~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~fl~~Cni~ 534 (534)
T PLN02742 468 EPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCNFH 534 (534)
T ss_pred eecChhheecccccccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHHHHhCCCC
Confidence 9999999999999988777788999999999999999999999999999999999999999999996
No 5
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=1.1e-120 Score=967.16 Aligned_cols=434 Identities=38% Similarity=0.678 Sum_probs=408.2
Q ss_pred cccCchHHHHHHHHHHHHHHHHH-hhCCCCCChHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcc
Q 011913 31 LLRVSDEKIKEMKDQVIRAQAYL-NFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHV 109 (475)
Q Consensus 31 ~~~~~~~~~~~~~d~~~~a~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (475)
...++|++||+|||||||||||+ +|||++||++|+|||+++|||+||+|||++.|+|||+++.++|++|+++|++||++
T Consensus 175 ~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp~~~~~~~~~m~~~~~~ak~~ 254 (629)
T PLN02769 175 KEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADLPPFIQKKLEKMEQTIARAKSC 254 (629)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHhh
Confidence 44578999999999999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCccccchhhhccHHHHhcCcCCCCCcCCCCCCCCCceeEE
Q 011913 110 YPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYA 189 (475)
Q Consensus 110 ~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~d~~~ihIv 189 (475)
.|||++|++||||||++|||++++|++|++|++||||+|+|||||||+||||+|||.+.+..+++|+.++++||+.+|+|
T Consensus 255 ~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~l~d~~l~Hy~ 334 (629)
T PLN02769 255 PVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSSLDMEDSNSEKFSDPSLRHYV 334 (629)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhccCCchhhccCCccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred EEcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCC--
Q 011913 190 VFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS-- 267 (475)
Q Consensus 190 ~~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~-- 267 (475)
++|||++|++|+|+|++.|+++|++++||||||..++.+|++||..+++++++|+|+++++|+|.+. .++++++++.
T Consensus 335 ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e~~~~~~~-~~~~~~~l~~~~ 413 (629)
T PLN02769 335 IFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILKDL-DKFALKQLSLPE 413 (629)
T ss_pred EEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeeeeeeeccc-chHHHHhhccch
Confidence 9999999999999999999999999999999999999999999999999999999999999998663 3456666532
Q ss_pred ----------------CCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhh
Q 011913 268 ----------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEAS 331 (475)
Q Consensus 268 ----------------~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~ 331 (475)
++++|+|+++|+|||||++||+++||||||+|+||++||++||++||+|+++|||+||.. .
T Consensus 414 ~~~~~~~~~~~~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~---r 490 (629)
T PLN02769 414 EFRVSFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGV---R 490 (629)
T ss_pred hhhhhhccCCCCchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhh---h
Confidence 368999999999999999999999999999999999999999999999999999999975 4
Q ss_pred HhhhhhccCCCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcC--CCCCCCCCCchhhhhhhccceeE
Q 011913 332 FRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGY--KRPLWKAGSLPLGWVTFYKHTMA 409 (475)
Q Consensus 332 ~~r~~~~Ln~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~--~~~l~~~~dq~~lN~~f~~~i~~ 409 (475)
+++++.|++ ..+|+++.||||+|||||||++||++++++++++|++++. +..+|++++||++|++|+|++++
T Consensus 491 l~~~~~yl~------~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF~g~v~~ 564 (629)
T PLN02769 491 LGQLKNYLG------DTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTFQDLIYP 564 (629)
T ss_pred hhhhhhhhc------ccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHHHHhcCeEEE
Confidence 555555554 2358889999999999999999999999999999998753 35679999999999999999999
Q ss_pred ecccccccccCCCCCCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCccccccccC
Q 011913 410 LDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH 474 (475)
Q Consensus 410 Ld~~WN~~~lgy~~~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl~~c~~~ 474 (475)
||++||++++||+..+..+.+++|+||||+|++|||+..++++|+++||+|++++++||++||||
T Consensus 565 LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~~fl~~Cni~ 629 (629)
T PLN02769 565 LDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDDRFMDECNVN 629 (629)
T ss_pred CCHHHccccccccccccccccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCChHHhhCCCC
Confidence 99999999999988777788899999999999999999999999999999999999999999996
No 6
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=2.8e-111 Score=882.39 Aligned_cols=455 Identities=40% Similarity=0.758 Sum_probs=417.6
Q ss_pred CccccccccccCcccccccccCc-hHHHHHHHHHHHHHHHHHhhCCC--CCChHHHHHHHHHHHHHHHHhccccC-----
Q 011913 13 KDQTNQAGARRSPNVQASLLRVS-DEKIKEMKDQVIRAQAYLNFAPP--GSNSHLVKELKLRIKEVERAVGAATK----- 84 (475)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~a~~y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----- 84 (475)
..+.+.-|.|++++++|+|++.+ |.+.|+..|+..++.||++.|+. ..+++++|-+. ++.+.+++...
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 132 (559)
T PLN02523 57 PSSGNAYGQRTFLALKSDPLKTRLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFA----DLSRNFTDLISKPSYR 132 (559)
T ss_pred ccccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHhHHHHhhcCcccc
Confidence 34556778999999999999999 99999999999999999999987 45555555333 44454443311
Q ss_pred ------------C--CcccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCC
Q 011913 85 ------------D--SDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTP 150 (475)
Q Consensus 85 ------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~P 150 (475)
| .+||+++.+++|.|+++|.+||+ .+||+++++|||+|++++||+++++|+|++|++||||+|+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~-~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~P 211 (559)
T PLN02523 133 ALLSSDGSAIDEDVLRQFEKEVKERVKVARQMIAESKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIP 211 (559)
T ss_pred ccccccCCcCchHHHhhcchhHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 1 25899999999999999999997 99999999999999999999999999999999999999999
Q ss_pred ccccchhhhccHHHHhcCcC--CCCCcCCCCCCCCCceeEEEEcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHH
Q 011913 151 KGLHCLSMQLTAEYFALQPE--ERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPA 228 (475)
Q Consensus 151 k~~hcl~~rl~~e~~~~~~~--~~~~~~~~~~~d~~~ihIv~~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~ 228 (475)
||||||+||||+|||.+++. ..++++.++++||+.+|+|++|||++|++|+|+|++.|+++|++++||||||++|+.+
T Consensus 212 K~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~a 291 (559)
T PLN02523 212 KSLHCLAMRLMEERIAHPEKYKDEGKPPPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAA 291 (559)
T ss_pred CCccchhhHhHHHHHhChHhhhccCCCcchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHH
Confidence 99999999999999988754 3456788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCC------------------------CCCCccchhhhHHhhhh
Q 011913 229 ISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS------------------------HDPRYTSALNHLRFYLP 284 (475)
Q Consensus 229 ~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~------------------------~~~~~~S~~~y~Rf~iP 284 (475)
|++||.++++.+++|+|++|++|+|++++++|+++++++ ++++|+|+++|+|||||
T Consensus 292 mk~Wf~~n~~~~a~I~V~~Iedf~~ln~~~~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IP 371 (559)
T PLN02523 292 MKVMFKMRDLNGAHVEVKAVEDYKFLNSSYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLP 371 (559)
T ss_pred HHHHHhhCCCCCcEEEEEEeehhhhcccccchHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHH
Confidence 999999999999999999999999999999988765554 34689999999999999
Q ss_pred ccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCCChhhhhccCCCCCceeeeeEEE
Q 011913 285 DVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLF 364 (475)
Q Consensus 285 ellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s~p~i~~~f~~~~~yfNsGVmLi 364 (475)
++||+++||||||+||||++||++||++||+|+++|||+||.. .++++..+++|++|.++++|+++.||||+|||||
T Consensus 372 eLLP~ldKVLYLD~DVVVq~DLseLw~iDL~gkv~aAVeDc~~---~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlI 448 (559)
T PLN02523 372 EMYPKLHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFG---SFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIF 448 (559)
T ss_pred HHhcccCeEEEEeCCEEecCCHHHHHhCcCCCceEEEehhhhh---HHHHHHHhhcccchhhhhCcCCCcccccCCcEEE
Confidence 9999999999999999999999999999999999999999975 5678889999999999889999999999999999
Q ss_pred echHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEecccccccccCCCCCCchhhccCCeEEEccCCCCC
Q 011913 365 DLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKP 444 (475)
Q Consensus 365 nL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~lgy~~~~~~~~~~~a~IIHy~G~~KP 444 (475)
||++||+++++++++.|.+.+.+..+|++|+||++|++|+|+|++||++||++++||++.+..+.+++|+||||+|++||
T Consensus 449 NL~~WRe~nITek~~~w~~ln~~~~l~DqdaLpp~LivF~gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~KP 528 (559)
T PLN02523 449 DLDAWRREKCTEQYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKP 528 (559)
T ss_pred eHHHHHHhchHHHHHHHHHhccccccccccccchHHHHhcCceEecCchhhccCCccCCCccccccCCCEEEEECCCCCc
Confidence 99999999999999988887777889999999999999999999999999999999988777788899999999999999
Q ss_pred cccCCccccHHHHHHHhccCCccccccccCC
Q 011913 445 WLEIGIAKYKGYWTKFINYDHPFLQRCNLHV 475 (475)
Q Consensus 445 W~~~~~~~y~~lW~~Y~~~~~~fl~~c~~~~ 475 (475)
|++.++++|+++|++|++++++||++|||+.
T Consensus 529 Wle~~i~~yr~~W~kYl~~~~~fl~~Cn~~~ 559 (559)
T PLN02523 529 WLDIAMNQFKPLWTKYVDYDMEFVQACNFGL 559 (559)
T ss_pred cccCCCCcchHHHHHHHccCCHHHHhCCCCC
Confidence 9999999999999999999999999999974
No 7
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=7.5e-107 Score=846.83 Aligned_cols=405 Identities=39% Similarity=0.754 Sum_probs=375.6
Q ss_pred ChHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 011913 61 NSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATY 140 (475)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~ 140 (475)
..++++||.+-+.| -.-+|++.|++||+++.++++ +||+.++||+++++|||+|++++||+++++|+|++|
T Consensus 88 ~~~~~~~~~~~l~~--~~~~~~~~d~~lp~s~~~~~~-------~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~ 158 (533)
T PLN02870 88 SERLVRDFYKILNE--VNTEEIPDGLKLPDSFSQLVS-------DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELM 158 (533)
T ss_pred hhhhHHHHHHHHHH--hccccccccccCChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999988877 467889999999999966555 778899999999999999999999999999999999
Q ss_pred HHHHhhccCCccccchhhhccHHHHhcCcCCCCCcC---CCCCCCCCceeEEEEcCcchhHHHHHHHHHhhcCCCCcEEE
Q 011913 141 LVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPN---QQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVF 217 (475)
Q Consensus 141 ~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~---~~~~~d~~~ihIv~~sDn~la~~V~I~Slv~ns~~p~~i~f 217 (475)
++||||+|+|||||||+||||+|||.+++..++.|. .++++||+.+|+|++|||++|++|||+|++.|+++|++++|
T Consensus 159 ~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VF 238 (533)
T PLN02870 159 NKHFAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVF 238 (533)
T ss_pred HHHHHHhhcCCCccccchhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceEE
Confidence 999999999999999999999999998766555554 45999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCC------------------------------
Q 011913 218 HVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS------------------------------ 267 (475)
Q Consensus 218 hIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~------------------------------ 267 (475)
|||||++|+.+|++||.+|++++++|||.++++|+|++.+|+||++|+++
T Consensus 239 HvvTD~~n~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (533)
T PLN02870 239 HVITDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKL 318 (533)
T ss_pred EEecCccccHHHHHHHhhCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhccc
Confidence 99999999999999999999999999999999999999999999977763
Q ss_pred --CCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcch--hhHhhhhhccCCCC
Q 011913 268 --HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESE--ASFRRMDLFINFSD 343 (475)
Q Consensus 268 --~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~--~~~~r~~~~Ln~s~ 343 (475)
++|+|+|+++|+||+||++||+++||||||+||||++||++||++||+|+++|||+||.... +.+++++.|+||+|
T Consensus 319 ~~~~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~ 398 (533)
T PLN02870 319 QARSPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSH 398 (533)
T ss_pred ccCCccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhccccc
Confidence 36899999999999999999999999999999999999999999999999999999996432 12467888999999
Q ss_pred hhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcC--CCCCCCCCCchhhhhhhccceeEecccccccccCC
Q 011913 344 PLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGY--KRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGY 421 (475)
Q Consensus 344 p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~--~~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~lgy 421 (475)
|.+..+|+++.||||||||||||++||++++++++++|++++. +..+|+||++|++|++|+|++++||++||++++||
T Consensus 399 p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLgy 478 (533)
T PLN02870 399 PLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGY 478 (533)
T ss_pred chhhcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHHhcCCCCC
Confidence 9999999999999999999999999999999999999998763 45789999999999999999999999999999999
Q ss_pred CCCCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCccccccccC
Q 011913 422 DSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH 474 (475)
Q Consensus 422 ~~~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl~~c~~~ 474 (475)
+.....+.+++|+||||+|++|||++.++++|+.+|.+|++++++||++|||+
T Consensus 479 ~~~~~~~~i~~aaIIHY~G~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 531 (533)
T PLN02870 479 QSKTNIESVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHIL 531 (533)
T ss_pred cccccccccCCcEEEEECCCCCCccccCccchhHHHHHHHccCchHhhhcCCC
Confidence 87666678899999999999999999999999999999999999999999996
No 8
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=9.9e-106 Score=841.62 Aligned_cols=404 Identities=35% Similarity=0.695 Sum_probs=374.4
Q ss_pred HHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCC
Q 011913 71 RIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTP 150 (475)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~P 150 (475)
-.+|++|+++|++.|+++|.++.++.+.|++++.++++.++||++|+.|||||++++||+++++|+|++|++||||+|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~P 173 (535)
T PLN02867 94 LREELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIP 173 (535)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhccHHHHhcCcCCCCCc---CCCCCCCCCceeEEEEcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHH
Q 011913 151 KGLHCLSMQLTAEYFALQPEERHLP---NQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLP 227 (475)
Q Consensus 151 k~~hcl~~rl~~e~~~~~~~~~~~~---~~~~~~d~~~ihIv~~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~ 227 (475)
||||||+||||+|||.+++..++.| +.++++||+.+|+|++|||++|++|||+|++.|+++|++++||||||++|+.
T Consensus 174 K~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~ 253 (535)
T PLN02867 174 KSLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYT 253 (535)
T ss_pred CCccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccH
Confidence 9999999999999998886655554 4569999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCC-----------------------------CCCCccchhhh
Q 011913 228 AISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS-----------------------------HDPRYTSALNH 278 (475)
Q Consensus 228 ~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~-----------------------------~~~~~~S~~~y 278 (475)
+|++||.+|++++++|||.++++|+|++.+++||++++++ ++|+|+|+++|
T Consensus 254 aM~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnY 333 (535)
T PLN02867 254 PMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNH 333 (535)
T ss_pred HHHHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHH
Confidence 9999999999999999999999999999999998765542 67999999999
Q ss_pred HHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcch--hhHhhhhhccCCCChhhhhccCCCCCc
Q 011913 279 LRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESE--ASFRRMDLFINFSDPLIAKKFDVKACT 356 (475)
Q Consensus 279 ~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~--~~~~r~~~~Ln~s~p~i~~~f~~~~~y 356 (475)
+||+||++||+++||||||+||||++||++||++||+|+++|||.|..+.. +..+++..|+||++|.+..+|+++.||
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p~~cY 413 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCA 413 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCCCCcc
Confidence 999999999999999999999999999999999999999999998753211 123567889999999988889999999
Q ss_pred eeeeeEEEechHHHHhhHHHHHHHHHHHcCC--CCCCCCCCchhhhhhhccceeEecccccccccCCCCCC-chhhccCC
Q 011913 357 WAFGMNLFDLQEWRKRKLTAVYHKYLQLGYK--RPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGV-ARRDIEQA 433 (475)
Q Consensus 357 fNsGVmLinL~~wR~~~it~~~~~~~~~~~~--~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~lgy~~~~-~~~~~~~a 433 (475)
||||||||||++||++++++++++|++++.+ ..+|++|.+|+++++|+|+|++||++||+.++||+... ..+.+++|
T Consensus 414 FNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~dqd~LN~~LlvF~g~v~~LD~rWNv~gLgy~~~~~~~~~i~~p 493 (535)
T PLN02867 414 WLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPREILESA 493 (535)
T ss_pred eecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccccccccchHHHHhcCcEEECChhhcccCCCcccccchhhhcCCc
Confidence 9999999999999999999999999998753 46899999998889999999999999999999987532 33557899
Q ss_pred eEEEccCCCCCcccCCccccHHHHHHHhccCCccccccccC
Q 011913 434 AVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH 474 (475)
Q Consensus 434 ~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl~~c~~~ 474 (475)
+||||+|++|||+++++++|+++|.+|++++++|+|+|||.
T Consensus 494 aIIHYnG~~KPW~e~~~~~yR~~W~kyl~~~~~fl~~cni~ 534 (535)
T PLN02867 494 AVLHFSGPAKPWLEIGFPEVRSLWYRHVNFSDKFIRKCRIM 534 (535)
T ss_pred EEEEECCCCCcccccCCCchhHHHHHhcCccchHHHhcccC
Confidence 99999999999999999999999999999999999999996
No 9
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=4.9e-105 Score=833.35 Aligned_cols=405 Identities=36% Similarity=0.727 Sum_probs=369.4
Q ss_pred ChHHHHHHHHHHHH-HHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 011913 61 NSHLVKELKLRIKE-VERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQAT 139 (475)
Q Consensus 61 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~ 139 (475)
..++++||.+-+.| . .=.|+..|.++|+++ ++++.++++.++||++|++|||||++++||+++++|+|+.
T Consensus 88 ~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~-------~~~~~~~~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~ 158 (534)
T PLN02659 88 SANVPEVMYQVLEQPL--SNDELKGRSDIPQTL-------EEFMDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEY 158 (534)
T ss_pred ccccHHHHHHHHHhhh--cccccCCccccchHH-------HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888776655 2 223667788999997 5556666679999999999999999999999999999999
Q ss_pred HHHHHhhccCCccccchhhhccHHHHhcCcCCCCCcC---CCCCCCCCceeEEEEcCcchhHHHHHHHHHhhcCCCCcEE
Q 011913 140 YLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPN---QQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIV 216 (475)
Q Consensus 140 ~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~---~~~~~d~~~ihIv~~sDn~la~~V~I~Slv~ns~~p~~i~ 216 (475)
++.||||+|+|||||||+||||+|||.+++..++.|+ .++++||+.+|+|++|||++|++|||+|++.|+++|++++
T Consensus 159 ~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~V 238 (534)
T PLN02659 159 LYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFV 238 (534)
T ss_pred HHHHHHhhhCCCCccccchhhHHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceE
Confidence 9999999999999999999999999998876655544 4589999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCC-----------------------------
Q 011913 217 FHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS----------------------------- 267 (475)
Q Consensus 217 fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~----------------------------- 267 (475)
||||||++|+.+|++||.+|++++++|||.++++|+|++.+|+||++|+++
T Consensus 239 FHivTD~~ny~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (534)
T PLN02659 239 LHIITDRKTYSPMQAWFSLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAK 318 (534)
T ss_pred EEEecCccccHHHHHHHhhCCCccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccc
Confidence 999999999999999999999999999999999999999999999988772
Q ss_pred ---CCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcch--hhHhhhhhccCCC
Q 011913 268 ---HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESE--ASFRRMDLFINFS 342 (475)
Q Consensus 268 ---~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~--~~~~r~~~~Ln~s 342 (475)
++|+|+|+++|+||+||++||+++||||||+||||++||++||++||+|+++|||+||.... ...++++.+++|+
T Consensus 319 l~~~~p~ylS~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s 398 (534)
T PLN02659 319 LQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFS 398 (534)
T ss_pred cccCCccceeHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhccc
Confidence 57899999999999999999999999999999999999999999999999999999996421 1236788899999
Q ss_pred ChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcC--CCCCCCCCCchhhhhhhccceeEecccccccccC
Q 011913 343 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGY--KRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLG 420 (475)
Q Consensus 343 ~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~--~~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~lg 420 (475)
+|.+..+|+++.||||+|||||||++||++++++++++|++++. +..+|+||+||++|++|+|++++||++||+.++|
T Consensus 399 ~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek~l~~l~~n~~~~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg 478 (534)
T PLN02659 399 HPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLG 478 (534)
T ss_pred chhhhhccCccccceecceeEeeHHHHHhcChHHHHHHHHHhcccccccccccccchHHHHHhcCCEEECChhheecCCc
Confidence 99998899999999999999999999999999999999998863 4578999999999999999999999999999999
Q ss_pred CCCCCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCccccccccC
Q 011913 421 YDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH 474 (475)
Q Consensus 421 y~~~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl~~c~~~ 474 (475)
|+.+...+.+++|+||||+|++|||+.+++++|+++|.+|++++++||++|||+
T Consensus 479 ~~~~~~~~~i~~paIIHYnG~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 532 (534)
T PLN02659 479 YQENTSLADAESAGVVHFNGRAKPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIR 532 (534)
T ss_pred ccccccccccCCcEEEEECCCCCccccccCCcchhHHHHHhccCCHHHHhcCCC
Confidence 987655667889999999999999999999999999999999999999999996
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=8.1e-57 Score=444.43 Aligned_cols=246 Identities=47% Similarity=0.878 Sum_probs=218.4
Q ss_pred eeEEEEcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhcc
Q 011913 186 HHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKE 265 (475)
Q Consensus 186 ihIv~~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~ 265 (475)
+|||+++||.++++|++.|++.|+++|.+++|||+||+++.+.+++|+...+..+++|+|+.++++.+......++++++
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999888999999999999999889999999999999999999999888899999999987655433222233333
Q ss_pred CC---------CCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhh
Q 011913 266 NS---------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMD 336 (475)
Q Consensus 266 ~~---------~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~ 336 (475)
++ .+++++|.++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d------------ 148 (257)
T cd06429 81 ESEADTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET------------ 148 (257)
T ss_pred hccccccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh------------
Confidence 22 467899999999999999999999999999999999999999999999999999866
Q ss_pred hccCCCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCC--CCCCCCCchhhhhhhccceeEecccc
Q 011913 337 LFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKR--PLWKAGSLPLGWVTFYKHTMALDKRW 414 (475)
Q Consensus 337 ~~Ln~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~--~l~~~~dq~~lN~~f~~~i~~Ld~~W 414 (475)
|||||||||||++||++++++++++|++++.+. .+++++||+++|++|+|+++.||++|
T Consensus 149 -------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~~~~~L~~~w 209 (257)
T cd06429 149 -------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGLTSPLDPSW 209 (257)
T ss_pred -------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccCeeEECChHH
Confidence 588999999999999999999999999886543 56889999999999999999999999
Q ss_pred cccccCCCCCCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhc
Q 011913 415 HVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFIN 462 (475)
Q Consensus 415 N~~~lgy~~~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~ 462 (475)
|++++|++.......+++++||||+|+.|||+..+.++|+++||+|++
T Consensus 210 N~~~l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~~yl~ 257 (257)
T cd06429 210 HVRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSYKELWEKYLS 257 (257)
T ss_pred cccCCcccccccccccCCcEEEEECCCCCCcCCCCCChHHHHHHHHhC
Confidence 999888875444456679999999999999999999999999999974
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.8e-46 Score=381.69 Aligned_cols=263 Identities=19% Similarity=0.259 Sum_probs=200.8
Q ss_pred CCceeEEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhh
Q 011913 183 PDLHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNA 260 (475)
Q Consensus 183 ~~~ihIv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~p 260 (475)
++.+|||+++|+++ +++|+|.|+++|+++ ..++|||++++++.+.++++..+....+..|+++.++. ++
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~-~~------- 93 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINC-ER------- 93 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCH-HH-------
Confidence 46799999999986 599999999999765 47999999999999998877665444466788877753 11
Q ss_pred hhhccCCCCCCccchhhhHHhhhhccccC-CCeEEEEecCeeeccccHHhhccCCCCCEEEEe-ccCCcchhhHhhhhhc
Q 011913 261 TLKKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAV-DTCKESEASFRRMDLF 338 (475)
Q Consensus 261 vl~~~~~~~~~~~S~~~y~Rf~iPellP~-ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV-~d~~~~~~~~~r~~~~ 338 (475)
++.+ ....++|.++|+||+||++||+ ++||||||+|+||++||++||++||+|..+||| .|+... .+......
T Consensus 94 -~~~~--~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~--~~~~~~~~ 168 (334)
T PRK15171 94 -LKSL--PSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAE--WWSKRAQS 168 (334)
T ss_pred -HhCC--cccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchh--HHHHHHHh
Confidence 1111 1245799999999999999995 999999999999999999999999997767766 444321 11222222
Q ss_pred cCCCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEecccccccc
Q 011913 339 INFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLG 418 (475)
Q Consensus 339 Ln~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~ 418 (475)
++. | +....|||||||||||++||++++++++++++..+........+||+++|++|.|+|+.||++||++.
T Consensus 169 l~~--~------~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN~~~~~~~~~L~~~wN~~~ 240 (334)
T PRK15171 169 LQT--P------GLASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLNILLAGKVKFIDAKYNTQF 240 (334)
T ss_pred cCC--c------cccccceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHHHHHcCCeEECCHhhCCcc
Confidence 321 1 01246999999999999999999999999999864311113346899999999999999999999873
Q ss_pred -cCCCC--CCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCccc
Q 011913 419 -LGYDS--GVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFL 468 (475)
Q Consensus 419 -lgy~~--~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl 468 (475)
..+.. .......++|+||||+|+.|||+..+.++++++||+|.. .+||-
T Consensus 241 ~~~~~~~~~~~~~~~~~p~IIHy~G~~KPW~~~~~~~~~~~f~~~~~-~spw~ 292 (334)
T PRK15171 241 SLNYELKDSVINPVNDETVFIHYIGPTKPWHSWADYPVSQYFLKAKE-ASPWK 292 (334)
T ss_pred chhHHHHhcccccccCCCEEEEECCCCCCCCCCCCCchHHHHHHHHh-cCCCC
Confidence 22211 011122458999999999999998888999999999995 45654
No 12
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=5.8e-43 Score=350.01 Aligned_cols=262 Identities=18% Similarity=0.308 Sum_probs=193.2
Q ss_pred eEEEEcCcc-hhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhcc
Q 011913 187 HYAVFSDNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKE 265 (475)
Q Consensus 187 hIv~~sDn~-la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~ 265 (475)
-||++.++. ..++|+|+|++.|+. ..++|||++++++.+.++.+.......+++|.|+.++++. ..+ ..
T Consensus 4 ~iv~~~~~y~~~~~~~i~Sil~n~~--~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~---~~~----~~- 73 (280)
T cd06431 4 AIVCAGYNASRDVVTLVKSVLFYRR--NPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELK---SRV----SW- 73 (280)
T ss_pred EEEEccCCcHHHHHHHHHHHHHcCC--CCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhh---hhh----cc-
Confidence 466677332 359999999999985 4599999999999999988876655668899999986421 111 00
Q ss_pred CCCCCCccchh-hhHHhhhhccccC-CCeEEEEecCeeeccccHHhhcc--CCCC-CEEEEeccCCcchhhHhhhhhccC
Q 011913 266 NSHDPRYTSAL-NHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNI--DMKG-KVIGAVDTCKESEASFRRMDLFIN 340 (475)
Q Consensus 266 ~~~~~~~~S~~-~y~Rf~iPellP~-ldKVLYLD~DvIV~~DLseLw~i--DL~g-~~iaAV~d~~~~~~~~~r~~~~Ln 340 (475)
....++|.. +|+||+||++||+ ++||||||+|+||++||++||++ |+.| +++|||++... .+.. ....
T Consensus 74 --~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~---~~~~--~~~~ 146 (280)
T cd06431 74 --IPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSD---WYLG--NLWK 146 (280)
T ss_pred --CcccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchh---hhhh--hhhh
Confidence 112355544 8899999999995 99999999999999999999998 6765 57777776532 1110 0000
Q ss_pred CCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCC-CCCCCCCCchhhhhhhccc---eeEecccccc
Q 011913 341 FSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYK-RPLWKAGSLPLGWVTFYKH---TMALDKRWHV 416 (475)
Q Consensus 341 ~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~-~~l~~~~dq~~lN~~f~~~---i~~Ld~~WN~ 416 (475)
...| +.....|||||||||||++||++++++++..+.+++.. ..-...+||+++|++|.++ ++.||++||+
T Consensus 147 ~~~~-----~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~~~~~~~L~~~wN~ 221 (280)
T cd06431 147 NHRP-----WPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNV 221 (280)
T ss_pred ccCC-----CcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCCcceeEECCCcccc
Confidence 0011 11123599999999999999999999998876655321 1113458999999999999 8999999999
Q ss_pred cccCCC-CCCchhhccCCeEEEccCCCCCcccCCc-cccHHHHHHHhccCCccccc
Q 011913 417 LGLGYD-SGVARRDIEQAAVIHYDGVMKPWLEIGI-AKYKGYWTKFINYDHPFLQR 470 (475)
Q Consensus 417 ~~lgy~-~~~~~~~~~~a~IIHy~G~~KPW~~~~~-~~y~~lW~~Y~~~~~~fl~~ 470 (475)
+..... ........++|+||||+|+.|||...+. ++|+++|.+|.+++.+-||+
T Consensus 222 ~~~~~~~~~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (280)
T cd06431 222 QLSDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRR 277 (280)
T ss_pred ccCccchHhHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCchhhhh
Confidence 853111 1000112468999999999999998875 89999999999999887764
No 13
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=7.4e-42 Score=335.36 Aligned_cols=237 Identities=19% Similarity=0.263 Sum_probs=185.8
Q ss_pred eeEEEEcCc-ch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhh
Q 011913 186 HHYAVFSDN-VL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 262 (475)
Q Consensus 186 ihIv~~sDn-~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl 262 (475)
||||+++++ ++ +++|+|+|+++|++. .++|||++++++.+..+.+..+....+.+++|++++.-.+.. +
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~--~---- 72 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVD--S---- 72 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcch--h----
Confidence 688886554 65 599999999999975 699999999999998888776655567889999886322111 1
Q ss_pred hccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCC
Q 011913 263 KKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFS 342 (475)
Q Consensus 263 ~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s 342 (475)
. ...++++..+|+||++|++||+++||||||+|+||++||++||++|++|+++|||+||..... ...++..++
T Consensus 73 ---~-~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~-~~~~~~~~~-- 145 (246)
T cd00505 73 ---E-HLKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRRE-GKYYRQKRS-- 145 (246)
T ss_pred ---h-hhcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhc-cchhhcccC--
Confidence 0 113678999999999999999999999999999999999999999999999999999874210 011111111
Q ss_pred ChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccc---eeEeccccccccc
Q 011913 343 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKH---TMALDKRWHVLGL 419 (475)
Q Consensus 343 ~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~---i~~Ld~~WN~~~l 419 (475)
...+.+||||||||||+++||++++.++..++..++... ...+||+++|.+|.++ +..||++||++..
T Consensus 146 -------~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~LN~~~~~~~~~i~~L~~~wN~~~~ 216 (246)
T cd00505 146 -------HLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLSS--LSGGDQDLLNTFFKQVPFIVKSLPCIWNVRLT 216 (246)
T ss_pred -------CCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhccc--CccCCcHHHHHHHhcCCCeEEECCCeeeEEec
Confidence 223568999999999999999888888887776654432 2357899999999998 9999999999976
Q ss_pred CCCCCC--chhhccCCeEEEccCCCCCcc
Q 011913 420 GYDSGV--ARRDIEQAAVIHYDGVMKPWL 446 (475)
Q Consensus 420 gy~~~~--~~~~~~~a~IIHy~G~~KPW~ 446 (475)
++.... ..+..++++||||+|+.|||.
T Consensus 217 ~~~~~~~~~~~~~~~~~iiHy~g~~KPW~ 245 (246)
T cd00505 217 GCYRSLNCFKAFVKNAKVIHFNGPTKPWN 245 (246)
T ss_pred CccccccchhhhcCCCEEEEeCCCCCCCC
Confidence 544321 134577999999999999996
No 14
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=3.5e-41 Score=330.13 Aligned_cols=238 Identities=20% Similarity=0.238 Sum_probs=190.9
Q ss_pred eeEEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhh
Q 011913 186 HHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLK 263 (475)
Q Consensus 186 ihIv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~ 263 (475)
||||+++|+.+ +++|++.|+++|+++ ..++|||++++++.+.++.+.......+..|+++.++.- .+ .
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~-----~~----~ 70 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDND-----DF----K 70 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHH-----HH----h
Confidence 69999999986 599999999999986 579999999999998887776654335778888887631 11 1
Q ss_pred ccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCCC
Q 011913 264 KENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSD 343 (475)
Q Consensus 264 ~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s~ 343 (475)
... ....+++..+|+||++|+++|+++||||||+|+||++||++||++|++|+++|||+|+.... ..... .
T Consensus 71 ~~~-~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~---~~~~~-~---- 141 (248)
T cd04194 71 FFP-ATTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQ---EKKRK-R---- 141 (248)
T ss_pred cCC-cccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHH---HHHHH-h----
Confidence 110 13467899999999999999999999999999999999999999999999999999987521 11110 0
Q ss_pred hhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEecccccccccCCCC
Q 011913 344 PLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDS 423 (475)
Q Consensus 344 p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~lgy~~ 423 (475)
......+.+||||||||+|+++||+.++++++++++.++... ...+||+++|.+|.+++..||.+||++..++..
T Consensus 142 ---~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~LN~~~~~~~~~L~~~~N~~~~~~~~ 216 (248)
T cd04194 142 ---RLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGGR--LIYPDQDILNAVLKDKILYLPPRYNFQTGFYYL 216 (248)
T ss_pred ---hcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCCc--eeeCChHHHHHHHhCCeEEcCcccccchhHhHH
Confidence 011234678999999999999999999999999999987643 345789999999999999999999999654332
Q ss_pred CC--------chhhccCCeEEEccCCCCCccc
Q 011913 424 GV--------ARRDIEQAAVIHYDGVMKPWLE 447 (475)
Q Consensus 424 ~~--------~~~~~~~a~IIHy~G~~KPW~~ 447 (475)
.. .....++++||||+|+.|||..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~~ 248 (248)
T cd04194 217 LKKKSKEEQELEEARKNPVIIHYTGSDKPWNK 248 (248)
T ss_pred hhccchhHHHHHHHhcCCEEEEeCCCCCCCCC
Confidence 11 1245679999999999999963
No 15
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.9e-40 Score=335.97 Aligned_cols=258 Identities=19% Similarity=0.265 Sum_probs=202.1
Q ss_pred ceeEEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCC--CceEEEEEecCCcccchhhhh
Q 011913 185 LHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPG--KATIQIQSIDNFNWLSTKYNA 260 (475)
Q Consensus 185 ~ihIv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~--~~~I~~~~i~~~~~l~~~~~p 260 (475)
.++||+++|++| +++|+|.|++.|++. -.+.|||++++++.+.++++-...... .+.+.+++++.+. ++.
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~----~~~- 75 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFL----DYP- 75 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhh----ccc-
Confidence 579999999987 599999999999985 469999999999999999888764433 3555666666543 221
Q ss_pred hhhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccC
Q 011913 261 TLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFIN 340 (475)
Q Consensus 261 vl~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln 340 (475)
..++++|.++|+||++|++||+++|+||||+||||+|||++||.+|++|+++|||.|+..... .++ +.
T Consensus 76 -------~~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~-~~~----~~ 143 (325)
T COG1442 76 -------PFTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYM-KEG----AL 143 (325)
T ss_pred -------ccccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhh-hhh----hh
Confidence 135789999999999999999999999999999999999999999999999999999875210 000 00
Q ss_pred CCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEecccccccccC
Q 011913 341 FSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLG 420 (475)
Q Consensus 341 ~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~lg 420 (475)
..........|||||||++|++.||++++++++++++.+.++. ...+||+++|++|++++.+||.+||++...
T Consensus 144 -----~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~~--~~~~DQdiLN~i~~~~~~~L~~~YN~~~~~ 216 (325)
T COG1442 144 -----RLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKEND--LLYPDQDILNMIFEDRVLELPIRYNAIPYI 216 (325)
T ss_pred -----HhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhccccc--cCCccccHHHHHHHhhhhccCcccceeehh
Confidence 0011223577999999999999999999999999999776543 445789999999999999999999999532
Q ss_pred -CCCC--CchhhccCCeEEEccCCCCCcccCCccccH-HHHHHHhccCCccc
Q 011913 421 -YDSG--VARRDIEQAAVIHYDGVMKPWLEIGIAKYK-GYWTKFINYDHPFL 468 (475)
Q Consensus 421 -y~~~--~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~-~lW~~Y~~~~~~fl 468 (475)
+... .......++.|+||+|+.|||+..+.+.++ .+|...+. .+||-
T Consensus 217 ~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~w~~i~~-~~p~~ 267 (325)
T COG1442 217 DSQLKDKYIYPFGDDPVILHYAGPTKPWHSDSSNYPRSHEWHEILA-ETPWK 267 (325)
T ss_pred hhccchhhhccCCCCceEEEecCCCCCCcCccccccHHHHHHHHHh-cCCcc
Confidence 1111 112345689999999999999999976654 66666653 45554
No 16
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=100.00 E-value=1.6e-37 Score=299.75 Aligned_cols=245 Identities=22% Similarity=0.369 Sum_probs=171.0
Q ss_pred eEEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhc
Q 011913 187 HYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 264 (475)
Q Consensus 187 hIv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~ 264 (475)
||++++|..| +++|+++|+++|++++..++|||++++++.+.++.+............+. ..+..... .+ .
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~-~~-----~ 73 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIE-FPDISMLE-EF-----Q 73 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEE-ETSGGHHH--------T
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeec-cchHHhhh-hh-----h
Confidence 7999999986 69999999999999877899999999999998888765543221111111 11111000 00 1
Q ss_pred cCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCCCh
Q 011913 265 ENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDP 344 (475)
Q Consensus 265 ~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s~p 344 (475)
.......+++..+|+||++|++||+++||||||+||||.+||++||+++++|+.+||++++... ... ....+
T Consensus 74 ~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~-----~~~---~~~~~ 145 (250)
T PF01501_consen 74 FNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFD-----NFP---NKRFP 145 (250)
T ss_dssp TS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----H-----HHH---TSTTS
T ss_pred hcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhh-----hhh---hcccc
Confidence 1113457899999999999999999999999999999999999999999999999999993321 110 00001
Q ss_pred hhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEecccccccccCC--C
Q 011913 345 LIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGY--D 422 (475)
Q Consensus 345 ~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~lgy--~ 422 (475)
..........+||||||||+|+++||++++.+++.++++.+.. ....+||+++|++|++++..||.+||++..++ .
T Consensus 146 ~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~DQ~~ln~~~~~~~~~L~~~~N~~~~~~~~~ 223 (250)
T PF01501_consen 146 FSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGM--KLGFPDQDILNIVFYGNIKPLPCRYNCQPSWYNQS 223 (250)
T ss_dssp SEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTT--T-SSCHHHHHHHHHTTGEEEEEGGGSEEHHHHHHT
T ss_pred hhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhccc--ccCcCchHHHhhhccceeEEECchhcccccccccc
Confidence 0011233468999999999999999999999999999887655 24467999999999999999999999997654 1
Q ss_pred CCCchhhccCCeEEEccCCCCCcccC
Q 011913 423 SGVARRDIEQAAVIHYDGVMKPWLEI 448 (475)
Q Consensus 423 ~~~~~~~~~~a~IIHy~G~~KPW~~~ 448 (475)
........++++||||+|..|||..+
T Consensus 224 ~~~~~~~~~~~~iiHy~g~~KPW~~~ 249 (250)
T PF01501_consen 224 DDYFNPILEDAKIIHYSGPPKPWKST 249 (250)
T ss_dssp HHHHHHHGCC-SEEE--SSS-TTSTT
T ss_pred chhhHhhcCCeEEEEeCCCCcCCCCC
Confidence 11113456799999999999999875
No 17
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=1.6e-34 Score=289.88 Aligned_cols=252 Identities=15% Similarity=0.238 Sum_probs=174.3
Q ss_pred eeEEE-EcCcch-hHHHHHHHHHhhcCCCCcEEEEEecCC-CCHHHHHHHHhhCCC--CCceEEEEEecCCcccchhhhh
Q 011913 186 HHYAV-FSDNVL-ACAVVVNSTVSFAKEPEKIVFHVVTDS-LNLPAISMWFLLNPP--GKATIQIQSIDNFNWLSTKYNA 260 (475)
Q Consensus 186 ihIv~-~sDn~l-a~~V~I~Slv~ns~~p~~i~fhIvtd~-is~~~~~~~~~~~~~--~~~~I~~~~i~~~~~l~~~~~p 260 (475)
+|+|+ +|++.+ .+-|+|+|++.|+. ..++|||++|+ ++++..+++...... ..+...++.+. +. +..+.
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~-~P--~~~~~- 74 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPIT-FP--SGNAA- 74 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEe-cC--ccchh-
Confidence 46655 455555 48999999999985 46999999998 555443333322111 22222444332 11 00010
Q ss_pred hhhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhcc--CCCCCEE-EEeccCCcchhhHhhhhh
Q 011913 261 TLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNI--DMKGKVI-GAVDTCKESEASFRRMDL 337 (475)
Q Consensus 261 vl~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~i--DL~g~~i-aAV~d~~~~~~~~~r~~~ 337 (475)
..+..+++.+|+||++|++||+++||||||+|+||.+||++||++ |++|..+ |++++.... ....+..
T Consensus 75 -------~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~--~~~~~~~ 145 (304)
T cd06430 75 -------EWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEP--NIGWYNR 145 (304)
T ss_pred -------hhhhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEeccccc--chhhhhh
Confidence 113456679999999999999999999999999999999999999 9998745 455553321 0011111
Q ss_pred ccCCCChhhhhccCCCCCceeeeeEEEechHHHH-----------hhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccc
Q 011913 338 FINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRK-----------RKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKH 406 (475)
Q Consensus 338 ~Ln~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~-----------~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~ 406 (475)
.. .+| + .+..|||||||||||++||+ .+++++++++++++..... .+||+++|++|.++
T Consensus 146 ~~--~~~-----~-~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~DQDiLN~v~~~~ 215 (304)
T cd06430 146 FA--RHP-----Y-YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKIT--WGDQDLINIIFHHN 215 (304)
T ss_pred hc--ccC-----c-ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCC--CCCHHHHHHHHcCC
Confidence 00 111 1 13357999999999999999 7889999999998765433 47899999999998
Q ss_pred ---eeEeccccccccc--CCCCCCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccC
Q 011913 407 ---TMALDKRWHVLGL--GYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYD 464 (475)
Q Consensus 407 ---i~~Ld~~WN~~~l--gy~~~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~ 464 (475)
++.||++||++.. .|..+....+.+.++|||++++.| .....+.|+.++....+|+
T Consensus 216 p~~~~~Lp~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~--~~~~~~~f~~~~~~~~~~~ 276 (304)
T cd06430 216 PEMLYVFPCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY--HSDKQPAFRAVYEAIREYT 276 (304)
T ss_pred CCeEEEcCccccCCccceeecccccccccccceEEEcCCCCC--CCccchHHHHHHHHHHhcc
Confidence 9999999998753 233333334557899999998777 4455567888888887765
No 18
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=100.00 E-value=6.9e-34 Score=280.12 Aligned_cols=231 Identities=15% Similarity=0.153 Sum_probs=168.2
Q ss_pred eeEEEE-cCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhh
Q 011913 186 HHYAVF-SDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 262 (475)
Q Consensus 186 ihIv~~-sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl 262 (475)
|||+.. +|+.| +++|+|.|+++|+. ..++|||++++++.+..+.+..+....++.++++.++.-.|+.
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~------- 71 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLH------- 71 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhh-------
Confidence 566665 44555 59999999999985 4799999999999998888776655567889998885211211
Q ss_pred hccCCCCCCccchhhhHHhhhhccccC-CCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhH-hhhhhccC
Q 011913 263 KKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASF-RRMDLFIN 340 (475)
Q Consensus 263 ~~~~~~~~~~~S~~~y~Rf~iPellP~-ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~-~r~~~~Ln 340 (475)
.. ....+ +..+|.|++++++||+ ++||||||+|+||.+||++||++||+|+++|||+||......- .++. +.+
T Consensus 72 -~~--~~~~~-~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~-~~~ 146 (248)
T cd06432 72 -KQ--TEKQR-IIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFW-KQG 146 (248)
T ss_pred -cc--cccch-hHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhh-hhh
Confidence 00 01111 3567899999999996 9999999999999999999999999999999999986421000 0010 001
Q ss_pred CCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHH---cCCCCCCCCCCchhhhhhhccc-eeEecccccc
Q 011913 341 FSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---GYKRPLWKAGSLPLGWVTFYKH-TMALDKRWHV 416 (475)
Q Consensus 341 ~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~---~~~~~l~~~~dq~~lN~~f~~~-i~~Ld~~WN~ 416 (475)
+. ...+ .+..|||||||||||++||++++++++.++++. +... ....||+++|.++.+. +++||++||+
T Consensus 147 ~~----~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~--l~~~DQDiLN~v~~~~~i~~Lp~~w~~ 219 (248)
T cd06432 147 YW----KSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNS--LANLDQDLPNNMQHQVPIFSLPQEWLW 219 (248)
T ss_pred hh----hhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCc--cccCCchhhHHHhccCCeEECChHHHH
Confidence 00 0112 245699999999999999999999987776654 2222 2345788999999886 9999999999
Q ss_pred cccCCCCCCchhhccCCeEEEccCC
Q 011913 417 LGLGYDSGVARRDIEQAAVIHYDGV 441 (475)
Q Consensus 417 ~~lgy~~~~~~~~~~~a~IIHy~G~ 441 (475)
+.. +. ..+..+.|.+|||..+
T Consensus 220 ~~~-~~---~~~~~~~~~~~~~~~~ 240 (248)
T cd06432 220 CET-WC---SDESKKKAKTIDLCNN 240 (248)
T ss_pred HHH-Hh---cccccCccceeecccC
Confidence 842 21 1334678999999863
No 19
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.95 E-value=2.3e-27 Score=232.48 Aligned_cols=217 Identities=14% Similarity=0.103 Sum_probs=155.5
Q ss_pred EEcCcch--hHHHHHHHHHhhcCCCCcEEEEEe-cCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccC
Q 011913 190 VFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVV-TDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKEN 266 (475)
Q Consensus 190 ~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIv-td~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~ 266 (475)
+++|+.| +++|++.|+.+|+++ +.++|+ +++++++.++.+.... .+++.++..+... .. .
T Consensus 6 ~~~~~~Y~~~a~vl~~SL~~~~~~---~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~~~-~~----~--- 68 (240)
T cd02537 6 LLTNDDYLPGALVLGYSLRKVGSS---YDLVVLVTPGVSEESREALEEVG------WIVREVEPIDPPD-SA----N--- 68 (240)
T ss_pred EecChhHHHHHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCCcc-hh----h---
Confidence 3466555 599999999999874 345544 5579998887766432 3344444322111 00 0
Q ss_pred CCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCCChhh
Q 011913 267 SHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLI 346 (475)
Q Consensus 267 ~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s~p~i 346 (475)
.....++..+|.||+++++. +++||||||+|+||.+||++||++ +..+|||.|+..
T Consensus 69 -~~~~~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~~------------------- 124 (240)
T cd02537 69 -LLKRPRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCGW------------------- 124 (240)
T ss_pred -hccchHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccCc-------------------
Confidence 01235677899999999974 699999999999999999999987 677888876531
Q ss_pred hhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccc--eeEecccccccccCCCCC
Q 011913 347 AKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKH--TMALDKRWHVLGLGYDSG 424 (475)
Q Consensus 347 ~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~--i~~Ld~~WN~~~lgy~~~ 424 (475)
..|||||||++|++. ++.+.+.+++.+... +..+||+++|.+|.++ +..||.+||++...+...
T Consensus 125 -------~~~fNsGv~l~~~~~----~~~~~~~~~~~~~~~---~~~~DQdiLN~~~~~~~~~~~l~~~yN~~~~~~~~~ 190 (240)
T cd02537 125 -------PDLFNSGVFVLKPSE----ETFNDLLDALQDTPS---FDGGDQGLLNSYFSDRGIWKRLPFTYNALKPLRYLH 190 (240)
T ss_pred -------cccccceEEEEcCCH----HHHHHHHHHHhccCC---CCCCCHHHHHHHHcCCCCEeECCcceeeehhhhccC
Confidence 248999999999964 456677777766543 4467999999999999 999999999985433211
Q ss_pred Cc-hhhccCCeEEEccCCCCCcccCCcc---------ccHHHHHHHh
Q 011913 425 VA-RRDIEQAAVIHYDGVMKPWLEIGIA---------KYKGYWTKFI 461 (475)
Q Consensus 425 ~~-~~~~~~a~IIHy~G~~KPW~~~~~~---------~y~~lW~~Y~ 461 (475)
.. ....++++||||+|+.|||...+.. .....||+..
T Consensus 191 ~~~~~~~~~~~iiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~w~~~~ 237 (240)
T cd02537 191 PEALWFGDEIKVVHFIGGDKPWSWWRDPETKEKDDYNELHQWWWDIY 237 (240)
T ss_pred chhhcccCCcEEEEEeCCCCCCCCCcCCCcccccchHHHHHHHHHHH
Confidence 11 1235689999999999999887643 3566777664
No 20
>PLN00176 galactinol synthase
Probab=99.94 E-value=1.8e-25 Score=227.59 Aligned_cols=244 Identities=12% Similarity=0.158 Sum_probs=155.8
Q ss_pred eeEEE--EcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhh
Q 011913 186 HHYAV--FSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNAT 261 (475)
Q Consensus 186 ihIv~--~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pv 261 (475)
.-+|. ++|..| ++.|+.+||..+... ..++ .+++++++.+..+.+... ++ .+++|+... +++ .
T Consensus 23 ~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~-~~lV-vlVt~dVp~e~r~~L~~~----g~--~V~~V~~i~--~~~---~ 89 (333)
T PLN00176 23 RAYVTFLAGNGDYVKGVVGLAKGLRKVKSA-YPLV-VAVLPDVPEEHRRILVSQ----GC--IVREIEPVY--PPE---N 89 (333)
T ss_pred eEEEEEEecCcchHHHHHHHHHHHHHhCCC-CCEE-EEECCCCCHHHHHHHHHc----CC--EEEEecccC--Ccc---c
Confidence 34444 456555 588899999877432 2343 455688998766654321 22 344554321 000 0
Q ss_pred hhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHh--hhh---
Q 011913 262 LKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFR--RMD--- 336 (475)
Q Consensus 262 l~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~--r~~--- 336 (475)
..+. . ..+ -..+|.||.++++. +++||||||+|+||.++|++||+++ +..+|||.||.+.....+ ++.
T Consensus 90 ~~~~--~-~~~-~~i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~--~~~~aAV~dc~~~~~~~~~p~~~~~~ 162 (333)
T PLN00176 90 QTQF--A-MAY-YVINYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLP--DGYFYAVMDCFCEKTWSHTPQYKIGY 162 (333)
T ss_pred cccc--c-cch-hhhhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCC--CcceEEEecccccccccccccccccc
Confidence 0000 0 111 13578899999976 6999999999999999999999884 336899999976321001 110
Q ss_pred -----hccCCCChhhhhccC-CCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEe
Q 011913 337 -----LFINFSDPLIAKKFD-VKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMAL 410 (475)
Q Consensus 337 -----~~Ln~s~p~i~~~f~-~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~L 410 (475)
..+++ |. ..+ +...||||||||||++.|+.+++. +++...... ..+||++||.+|.++|.+|
T Consensus 163 c~~~~~~~~w--p~---~~g~~~~~yFNSGVlvinps~~~~~~ll----~~l~~~~~~---~f~DQD~LN~~F~~~~~~L 230 (333)
T PLN00176 163 CQQCPDKVTW--PA---ELGPPPPLYFNAGMFVFEPSLSTYEDLL----ETLKITPPT---PFAEQDFLNMFFRDIYKPI 230 (333)
T ss_pred cccchhhccc--hh---hccCCCCCeEEeEEEEEEcCHHHHHHHH----HHHHhcCCC---CCCCHHHHHHHHcCcEEEC
Confidence 01111 10 111 246799999999999999976655 455554332 3479999999999999999
Q ss_pred ccccccccc-CCCCCCchhhccCCeEEEccC-CCCCcccCCcc---------ccHHHHHHHhc
Q 011913 411 DKRWHVLGL-GYDSGVARRDIEQAAVIHYDG-VMKPWLEIGIA---------KYKGYWTKFIN 462 (475)
Q Consensus 411 d~~WN~~~l-gy~~~~~~~~~~~a~IIHy~G-~~KPW~~~~~~---------~y~~lW~~Y~~ 462 (475)
|.+||++.. -+... .....++++||||+| ..|||+..+.+ .+.+.||..++
T Consensus 231 p~~YN~~~~~~~~~~-~~~~~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~ 292 (333)
T PLN00176 231 PPVYNLVLAMLWRHP-ENVELDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYN 292 (333)
T ss_pred CchhcCchhhhhhCh-hhcccCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHHHHHHHHhc
Confidence 999999842 22110 112246899999997 57999876532 24567888875
No 21
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.82 E-value=2.2e-19 Score=179.25 Aligned_cols=143 Identities=14% Similarity=0.197 Sum_probs=110.3
Q ss_pred CccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCCChhhhhcc
Q 011913 271 RYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKF 350 (475)
Q Consensus 271 ~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s~p~i~~~f 350 (475)
..++. +|.||.++++ ++++||||||+|+||.++|++||+++.. ..+||+. .
T Consensus 75 ~~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~-~~~Aap~-~------------------------- 125 (278)
T cd06914 75 AYWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNY-IKFAAPR-A------------------------- 125 (278)
T ss_pred ccHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCcc-cceeeec-C-------------------------
Confidence 35554 5999999998 6899999999999999999999998733 3345432 1
Q ss_pred CCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccc-------eeEeccc-ccccccCCC
Q 011913 351 DVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKH-------TMALDKR-WHVLGLGYD 422 (475)
Q Consensus 351 ~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~-------i~~Ld~~-WN~~~lgy~ 422 (475)
..||||||||||++.|+.+++.+++.+...... ..+||+++|.+|.|. +..||.+ ||++..-+.
T Consensus 126 ---~~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~-----~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r 197 (278)
T cd06914 126 ---YWKFASHLMVIKPSKEAFKELMTEILPAYLNKK-----NEYDMDLINEEFYNSKQLFKPSVLVLPHRQYGLLTGEFR 197 (278)
T ss_pred ---cceecceeEEEeCCHHHHHHHHHHHHHhcccCC-----CCCChHHHHHHHhCCccccCcceEEcCccccccCChhhc
Confidence 018999999999999999999998887654322 346889999999999 9999997 999853221
Q ss_pred CC---------------Cc-hhhccCCeEEEccCC--CCCcccCCc
Q 011913 423 SG---------------VA-RRDIEQAAVIHYDGV--MKPWLEIGI 450 (475)
Q Consensus 423 ~~---------------~~-~~~~~~a~IIHy~G~--~KPW~~~~~ 450 (475)
.. .+ .+..+++++|||++. .|||.....
T Consensus 198 ~~~~~~~l~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~~ 243 (278)
T cd06914 198 EKLHKSFLSNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNNL 243 (278)
T ss_pred ccCHHHhhccccccccccCHHHHHhhCeEEEecCCCCCCCcCCcCH
Confidence 11 01 234578999999986 699998753
No 22
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.2e-11 Score=139.77 Aligned_cols=257 Identities=16% Similarity=0.209 Sum_probs=179.8
Q ss_pred CCCCceeEEEEcCcc-hh--HHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchh
Q 011913 181 HNPDLHHYAVFSDNV-LA--CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTK 257 (475)
Q Consensus 181 ~d~~~ihIv~~sDn~-la--~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~ 257 (475)
.+.+.|||+-..-.. |. +-++|.|+++|++.| +.|+++-+-+|..-.+.+--++..+++..+++... |-.
T Consensus 1177 ~~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLkNyLSPtFKe~iP~mA~eYnFeyElv~Yk---WPr-- 1249 (1470)
T KOG1879|consen 1177 KDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLKNYLSPTFKESIPHMAKEYNFEYELVQYK---WPR-- 1249 (1470)
T ss_pred CccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeehhhcChHHHHHHHHHHHHhCceEEEEEec---Cch--
Confidence 455589998765554 43 889999999999976 99999999998766655555666778888887654 522
Q ss_pred hhhhhhccCCCCCCccchhhhHHhhhhccccC-CCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhh
Q 011913 258 YNATLKKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMD 336 (475)
Q Consensus 258 ~~pvl~~~~~~~~~~~S~~~y~Rf~iPellP~-ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~ 336 (475)
+++++..... -+-.|==||+.-+||- ++||||+|+|-||+.||.||.+.|++|.+.|-++.|.... .+.
T Consensus 1250 ---WLhqQ~EKQR---iiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfdl~GaPygYtPfCdsR~----EMD 1319 (1470)
T KOG1879|consen 1250 ---WLHQQTEKQR---IIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFDLGGAPYGYTPFCDSRR----EMD 1319 (1470)
T ss_pred ---hhhhhhhhhh---hhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcccCCCccccCccccccc----ccc
Confidence 3433322111 1344555788889996 9999999999999999999999999999999999998532 222
Q ss_pred hccCCCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHc--CCCCCCC-CCCchhhhhhhccceeEeccc
Q 011913 337 LFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLG--YKRPLWK-AGSLPLGWVTFYKHTMALDKR 413 (475)
Q Consensus 337 ~~Ln~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~--~~~~l~~-~~dq~~lN~~f~~~i~~Ld~~ 413 (475)
.|-.|+..+.++.. .+..|-.|...|+||++.|+....+++....+.- ....+-. .+||| -|+...-.|+.||..
T Consensus 1320 GyRFWK~GYW~~hL-~grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsNLDQDLP-Nnm~hqVpIkSLPqe 1397 (1470)
T KOG1879|consen 1320 GYRFWKQGYWKKHL-RGRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSNLDQDLP-NNMQHQVPIKSLPQE 1397 (1470)
T ss_pred chhHHhhhHHHHHh-ccCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhhcccccc-ccceeecccccCCcc
Confidence 22223333333332 2577889999999999999999888886655542 2223333 35775 466777789999999
Q ss_pred ccccccCCCCCCchhhccCCeEEEccCCCCCcccCC----ccccHHHHHHHhc
Q 011913 414 WHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIG----IAKYKGYWTKFIN 462 (475)
Q Consensus 414 WN~~~lgy~~~~~~~~~~~a~IIHy~G~~KPW~~~~----~~~y~~lW~~Y~~ 462 (475)
|=++....+ .+..+.+++|--+- -||.... ..+....|..|..
T Consensus 1398 WLWCETWC~----d~skkkAktIDLCn--NP~TKEpKL~~A~Riv~EW~dyD~ 1444 (1470)
T KOG1879|consen 1398 WLWCETWCD----DESKKKAKTIDLCN--NPLTKEPKLDAARRIVSEWTDYDA 1444 (1470)
T ss_pred hhhhhhhcC----chhhhhchhhhhhc--CccccchhhHHHhhhcCCCcccch
Confidence 988754333 34557888888885 5776641 2345556666543
No 23
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=1.4e-07 Score=94.11 Aligned_cols=154 Identities=17% Similarity=0.231 Sum_probs=88.0
Q ss_pred hhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhh------------------
Q 011913 276 LNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDL------------------ 337 (475)
Q Consensus 276 ~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~------------------ 337 (475)
.++.++-+.+.. ++|||+|||+|.||.+++++||++. -+-.+|.+|.......|+|.+.
T Consensus 155 ~mftKLrVfeqt-EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD~~~sp~~fhrp~~~i~~~ft~~faayg~~r~ 231 (368)
T COG5597 155 DMFTKLRVFEQT-EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYGKMRA 231 (368)
T ss_pred HHhHHHHhhhhh-hhceEEEeccchHHhhhhHHHhcch--hhhhccCCchhhCHHHhcCCCCccceeecHHHHhhcccHh
Confidence 566677776655 6999999999999999999999865 4455555554432222333222
Q ss_pred -----ccCCC--Chh-hhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCC---Cchhhhhhhcc-
Q 011913 338 -----FINFS--DPL-IAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAG---SLPLGWVTFYK- 405 (475)
Q Consensus 338 -----~Ln~s--~p~-i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~---dq~~lN~~f~~- 405 (475)
|++.. ++. +.+.+..-+-+||||.|+++..+.--..+. .+. .. .+|+.. -|.++|+.++.
T Consensus 232 ~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv----~~a--lP--klydda~mmeqsllnlaYn~~ 303 (368)
T COG5597 232 ALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIV----WFA--LP--KLYDDADMMEQSLLNLAYNYE 303 (368)
T ss_pred hhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHH----HHh--hH--HhhhhhhHHHHHHHHHHHhhh
Confidence 22221 111 111122246799999999999876533322 111 11 134422 24566777543
Q ss_pred ---ceeEecccccccccCCCCCCchhhccCCeEEEccCCCCCcccCCc
Q 011913 406 ---HTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGI 450 (475)
Q Consensus 406 ---~i~~Ld~~WN~~~lgy~~~~~~~~~~~a~IIHy~G~~KPW~~~~~ 450 (475)
-|..++.+|| ||-. ...++--.+-+|+ |||...+.
T Consensus 304 g~FPwerld~~yN----G~wa--~~ndlPylka~Hg----K~W~y~g~ 341 (368)
T COG5597 304 GFFPWERLDPRYN----GYWA--DANDLPYLKAWHG----KPWFYTGE 341 (368)
T ss_pred ccCchhhcCcccc----cccc--cccccchHHHhhc----CcCCCCcc
Confidence 3566777777 3321 1112222345664 99999875
No 24
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=95.95 E-value=0.037 Score=52.87 Aligned_cols=143 Identities=16% Similarity=0.044 Sum_probs=79.7
Q ss_pred ccchhhhHHh-hhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCCChhhhhcc
Q 011913 272 YTSALNHLRF-YLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKF 350 (475)
Q Consensus 272 ~~S~~~y~Rf-~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s~p~i~~~f 350 (475)
.+......|. ++-+++..=--|+|+|+|++..+|..++++ -.+.-+.+..|+.... ..
T Consensus 47 ~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~--~~~~Di~~~~d~~~~~-------------------~~ 105 (212)
T PF03407_consen 47 AFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFE--NPDADILFSSDGWDGT-------------------NS 105 (212)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhc--cCCCceEEecCCCccc-------------------ch
Confidence 3444555665 445667653459999999999999999992 2344444444554310 00
Q ss_pred CCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccc--------eeEecccccccccCCC
Q 011913 351 DVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKH--------TMALDKRWHVLGLGYD 422 (475)
Q Consensus 351 ~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~--------i~~Ld~~WN~~~lgy~ 422 (475)
......+|+|++.+.-..- ...-+.+|........ ...||.++|.++... +..||..--..+.+|-
T Consensus 106 ~~~~~~~n~G~~~~r~t~~----~~~~~~~w~~~~~~~~--~~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f 179 (212)
T PF03407_consen 106 DRNGNLVNTGFYYFRPTPR----TIAFLEDWLERMAESP--GCWDQQAFNELLREQAARYGGLRVRFLPPSLFPNGHGYF 179 (212)
T ss_pred hhcCCccccceEEEecCHH----HHHHHHHHHHHHHhCC--CcchHHHHHHHHHhcccCCcCcEEEEeCHHHeeccccce
Confidence 1123345999999977652 2223344444432221 123788888877663 4566655443333321
Q ss_pred CC-Cchh-h--ccCCeEEEccCC
Q 011913 423 SG-VARR-D--IEQAAVIHYDGV 441 (475)
Q Consensus 423 ~~-~~~~-~--~~~a~IIHy~G~ 441 (475)
.. .... . ...|.+||.++.
T Consensus 180 ~~~~~~~~~~~~~~p~~vH~n~~ 202 (212)
T PF03407_consen 180 CQSRDWAWVPTKNKPYIVHANCC 202 (212)
T ss_pred eecchhhhhccccccceEEEcCC
Confidence 11 0111 1 357999999863
No 25
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=95.57 E-value=0.12 Score=54.52 Aligned_cols=162 Identities=16% Similarity=0.176 Sum_probs=90.3
Q ss_pred CCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCCChhhhhc
Q 011913 270 PRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKK 349 (475)
Q Consensus 270 ~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s~p~i~~~ 349 (475)
+..|+...++|=.+- -.|+.+-+.|||+|+||..- -+++.+..+ .+... ..+.+.. ..
T Consensus 179 p~~WaKlpaLR~aM~-~~PeaEWiWWLDsDALImNm---sfelPlery-----~~~Nl---Vihg~~~----------~l 236 (429)
T PLN03182 179 AGFWAKLPLLRKLML-AHPEVEWIWWMDSDALFTDM---TFEIPLEKY-----EGYNL---VIHGWDE----------LV 236 (429)
T ss_pred CcchhHHHHHHHHHH-HCCCceEEEEecCCceeecC---CCCCCHhHc-----CCcCe---eeccchh----------hh
Confidence 456777777665543 37999999999999999762 122222211 00000 0000111 11
Q ss_pred cC-CCCCceeeeeEEEechHHHHhhHHHHHHHHHHH-----------------cCCCCCCCCCCchhhhhhhc------c
Q 011913 350 FD-VKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL-----------------GYKRPLWKAGSLPLGWVTFY------K 405 (475)
Q Consensus 350 f~-~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~-----------------~~~~~l~~~~dq~~lN~~f~------~ 405 (475)
+. .+-.+.|+|+++|..-.|--.=+ + .|... ..++..++.+||.++-..+. +
T Consensus 237 ~~~kdW~GLNtGsFLIRNcqWSldlL-D---aWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~~~~w~ 312 (429)
T PLN03182 237 YDQKSWIGLNTGSFLIRNCQWSLDLL-D---AWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQRERWG 312 (429)
T ss_pred eeccccCccceeeEEEEcCHHHHHHH-H---HHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhcchhhc
Confidence 22 34568999999999988864322 2 23222 23555677788887755441 2
Q ss_pred ceeEecccccccccC------CCCCC-----chhhccCCeEEEccCCCCCcccCCccccHHHHH
Q 011913 406 HTMALDKRWHVLGLG------YDSGV-----ARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWT 458 (475)
Q Consensus 406 ~i~~Ld~~WN~~~lg------y~~~~-----~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~ 458 (475)
.-..|...|-+.|.. |+... ...+.+-|-|.||+| .||....+..+-..-|.
T Consensus 313 ~kv~le~~y~l~Gyw~~iv~~yee~~~~~~~g~gd~rwPfvtHF~G-ckpC~~~~~y~~~~C~~ 375 (429)
T PLN03182 313 DKVYLENSYYLHGYWVGLVDRYEEMMEKYHPGLGDDRWPFVTHFVG-CKPCGGYGDYPVERCLK 375 (429)
T ss_pred cceEEeecceeccccHHHHHHHHHHHHhcCCCCCCcccceeEeecc-ceecCCCCCcCHHHHHH
Confidence 235666666666531 11100 012345689999999 79986655333334443
No 26
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=94.28 E-value=0.17 Score=50.84 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=62.4
Q ss_pred EEEEcCcc-hh-HHHHHHHHHhhcCCCCcEEEEEec-CCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhc
Q 011913 188 YAVFSDNV-LA-CAVVVNSTVSFAKEPEKIVFHVVT-DSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 264 (475)
Q Consensus 188 Iv~~sDn~-la-~~V~I~Slv~ns~~p~~i~fhIvt-d~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~ 264 (475)
||++.-+. .. +..+|+.+ +.....-.|.+..-. ++++.+.++.++. ...|.++++... +.+++.
T Consensus 4 IVi~~g~~~~~~a~~lI~~L-R~~g~~LPIEI~~~~~~dl~~~~~~~l~~-----~q~v~~vd~~~~--~~~~~~----- 70 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVL-RRLGNTLPIEIIYPGDDDLSKEFCEKLLP-----DQDVWFVDASCV--IDPDYL----- 70 (271)
T ss_pred EEEEecCccHHHHHHHHHHH-HHhCCCCCEEEEeCCccccCHHHHHHHhh-----hhhhheecceEE--eecccc-----
Confidence 56655444 44 34455555 444433346555554 5688887777664 334555555431 111111
Q ss_pred cCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccC
Q 011913 265 ENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNID 313 (475)
Q Consensus 265 ~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iD 313 (475)
...+....|..=.+.-++-..+.||+||+|.|...|++.||+.+
T Consensus 71 -----~~~~~~~~~~~K~lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 71 -----GKSFSKKGFQNKWLALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred -----ccccccCCchhhhhhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 01111013333345566777999999999999999999999863
No 27
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=92.29 E-value=0.08 Score=52.28 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=12.7
Q ss_pred ccCCCeEEEEecCeeeccccHHhhccCCCCCEEEE--eccCCcchhhHhhhhhccCCCChhhhhc-cCCCCCceeeeeEE
Q 011913 287 FPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGA--VDTCKESEASFRRMDLFINFSDPLIAKK-FDVKACTWAFGMNL 363 (475)
Q Consensus 287 lP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaA--V~d~~~~~~~~~r~~~~Ln~s~p~i~~~-f~~~~~yfNsGVmL 363 (475)
+|+++-|+|||+|++|..-=-+|-+.=|+...+-- ..+.... ....+.+.-+..++.-... ...+..++|+|+++
T Consensus 74 ~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~--p~~~~~~~~~~~~~~~~~li~t~d~~gLNtGsFl 151 (239)
T PF05637_consen 74 YPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIV--PPDSIIKTYSVIDGNDIHLIITQDWNGLNTGSFL 151 (239)
T ss_dssp -TT-SEEEEE-TTEEE----------------------------------------------------------------
T ss_pred CCCCCEEEEEcCCeEEEecccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence 48899999999999997654444332121111100 0111100 0001111111111110011 23467799999999
Q ss_pred EechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhh------hccceeEecccccccccCCCCCC-chhhccCCeEE
Q 011913 364 FDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVT------FYKHTMALDKRWHVLGLGYDSGV-ARRDIEQAAVI 436 (475)
Q Consensus 364 inL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~------f~~~i~~Ld~~WN~~~lgy~~~~-~~~~~~~a~II 436 (475)
+--..|-+. +.+.+.+......+...+..++|.++-.+ +.+++..+|.+|=- .|.... .....+..-|+
T Consensus 152 iRns~ws~~-fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~~~~~~~~~~vpq~~~n---sy~~~~~~~~~~~GDfvv 227 (239)
T PF05637_consen 152 IRNSPWSRD-FLDAWADPLYRNYDWDQLEFDEQSALEHLLQWHPEILSKVALVPQRWFN---SYPEDECNYQYKEGDFVV 227 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc
Confidence 998888753 33333332222222211223455544333 33345555644321 122110 01233466899
Q ss_pred EccC
Q 011913 437 HYDG 440 (475)
Q Consensus 437 Hy~G 440 (475)
||.|
T Consensus 228 hfaG 231 (239)
T PF05637_consen 228 HFAG 231 (239)
T ss_dssp ----
T ss_pred cccc
Confidence 9998
No 28
>PLN03181 glycosyltransferase; Provisional
Probab=89.97 E-value=1.8 Score=46.06 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=67.3
Q ss_pred CCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhh-ccCCCC-hhhh
Q 011913 270 PRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDL-FINFSD-PLIA 347 (475)
Q Consensus 270 ~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~-~Ln~s~-p~i~ 347 (475)
+..|+..-..|=.+ .-+|+.+-|.|||.|+||...=- ++.+. +|+. .|.... | .
T Consensus 180 p~~WaKipalRaAM-~a~PeAEWfWWLDsDALIMNp~~---sLPl~------------------ry~~~NLvvhg~p--~ 235 (453)
T PLN03181 180 NSYWAKLPVVRAAM-LAHPEAEWIWWVDSDAVFTDMDF---KLPLH------------------RYRDHNLVVHGWP--K 235 (453)
T ss_pred chhhhHHHHHHHHH-HHCCCceEEEEecCCceeecCCC---CCCHh------------------hcCCccccccCCc--c
Confidence 44566666666433 22899999999999999985511 12211 1110 000000 1 0
Q ss_pred hccC-CCCCceeeeeEEEechHHHHhhHH------------HHHHHHHHH-cCCCCCCCCCCchhhhhhh--c----cce
Q 011913 348 KKFD-VKACTWAFGMNLFDLQEWRKRKLT------------AVYHKYLQL-GYKRPLWKAGSLPLGWVTF--Y----KHT 407 (475)
Q Consensus 348 ~~f~-~~~~yfNsGVmLinL~~wR~~~it------------~~~~~~~~~-~~~~~l~~~~dq~~lN~~f--~----~~i 407 (475)
..+. .+-.++|+||++|.--.|-..=+. ++.-+.+.. ..++...+.+||..+-..+ . +.-
T Consensus 236 ~vy~~qdw~GlN~GsFLIRNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvyll~~~~~~w~~k 315 (453)
T PLN03181 236 LIYEKRSWTALNAGVFLIRNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVYLLYKHKEKWGDK 315 (453)
T ss_pred cccccccccccceeeeEEecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHHHHHhccchhccc
Confidence 1122 245699999999998888643211 111122221 4555667778887764332 1 123
Q ss_pred eEeccccccccc
Q 011913 408 MALDKRWHVLGL 419 (475)
Q Consensus 408 ~~Ld~~WN~~~l 419 (475)
..|...|-++|.
T Consensus 316 ~ylE~~yy~~Gy 327 (453)
T PLN03181 316 IYLEGEYYFEGY 327 (453)
T ss_pred eeeecceeeeee
Confidence 466666666653
No 29
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=84.33 E-value=4.4 Score=43.51 Aligned_cols=119 Identities=14% Similarity=0.206 Sum_probs=62.7
Q ss_pred CCceeEEEE-cCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhh
Q 011913 183 PDLHHYAVF-SDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNAT 261 (475)
Q Consensus 183 ~~~ihIv~~-sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pv 261 (475)
...++|+++ |+..-++.-+|.|++++....+.+.+.|--|+-+.+..+.... +.+ .++.+.-.++.... +
T Consensus 92 ~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~---y~~-~v~~i~~~~~~~i~-----~ 162 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKS---YGD-QVTYIQHPDFSPIT-----I 162 (434)
T ss_dssp -----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHG---GGG-GSEEEE-S--S---------
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHH---hhh-hheeeecCCcCCce-----e
Confidence 345666664 5555679999999999865445566666667765554433222 211 12222111111000 0
Q ss_pred hhccCCCCCCccchhhhHHhhhhccccC--CCeEEEEecCeeeccccHHhhc
Q 011913 262 LKKENSHDPRYTSALNHLRFYLPDVFPA--LNKVLLFDHDVVVQSDLGRLWN 311 (475)
Q Consensus 262 l~~~~~~~~~~~S~~~y~Rf~iPellP~--ldKVLYLD~DvIV~~DLseLw~ 311 (475)
..-+.....|+.++.|+|.-|-.+|.. +++||.|.+|+.|--|+=+-|+
T Consensus 163 -~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~ 213 (434)
T PF03071_consen 163 -PPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFS 213 (434)
T ss_dssp --TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHH
T ss_pred -CcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHH
Confidence 000000124567889999999999974 8999999999999999887775
No 30
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=84.18 E-value=5.5 Score=41.46 Aligned_cols=115 Identities=14% Similarity=0.114 Sum_probs=68.8
Q ss_pred eeEEEEcCcc-hhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhc
Q 011913 186 HHYAVFSDNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 264 (475)
Q Consensus 186 ihIv~~sDn~-la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~ 264 (475)
++|++++=|. -++.-+|.||++.........++|..|+-..+..+.... +. ..+.++.-.++...+ + +
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~---~~-~~i~~i~~~~~~~~~------~-~ 70 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKS---FG-DGVTHIQHPPISIKN------V-N 70 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHh---hc-cccEEEEcccccccc------c-C
Confidence 4566665554 478999999999742224578899989876554433222 11 122222111111000 0 0
Q ss_pred cCCCCCCccchhhhHHhhhhccccC--CCeEEEEecCeeeccccHHhhc
Q 011913 265 ENSHDPRYTSALNHLRFYLPDVFPA--LNKVLLFDHDVVVQSDLGRLWN 311 (475)
Q Consensus 265 ~~~~~~~~~S~~~y~Rf~iPellP~--ldKVLYLD~DvIV~~DLseLw~ 311 (475)
.......|..++.|++.-+-.+|-. +++||+||+|+++--|.-+.++
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~ 119 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQ 119 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHH
Confidence 0001124566778888888888865 8999999999999999655444
No 31
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=84.10 E-value=37 Score=34.27 Aligned_cols=199 Identities=12% Similarity=0.062 Sum_probs=108.1
Q ss_pred CCceeEEEEcCcchh--HHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhh
Q 011913 183 PDLHHYAVFSDNVLA--CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNA 260 (475)
Q Consensus 183 ~~~ihIv~~sDn~la--~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~p 260 (475)
+-.|-|.+++-..|. .---+.|.=++=-...++++||+||....-. .....++.++.++.+.+.
T Consensus 33 n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p-----~v~lg~~r~~~V~~v~~~--------- 98 (271)
T cd02515 33 NITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVP-----EVELGPGRRLTVLKIAEE--------- 98 (271)
T ss_pred CCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCc-----ccccCCCceeEEEEeccc---------
Confidence 345666666666554 4445667666655556789999999654211 112234566777777421
Q ss_pred hhhccCCCCCCccchhhhHHh------hhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhh
Q 011913 261 TLKKENSHDPRYTSALNHLRF------YLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRR 334 (475)
Q Consensus 261 vl~~~~~~~~~~~S~~~y~Rf------~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r 334 (475)
..|...+..|+ -...++.++|-+.++|+|+++++++.. + .| |..+|...--. |.+
T Consensus 99 ----------~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~--E-~L-g~lva~lHp~~-----y~~ 159 (271)
T cd02515 99 ----------SRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFGV--E-TL-GDSVAQLHPWW-----YGK 159 (271)
T ss_pred ----------cCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCCH--H-Hh-hhhheecChhh-----hcC
Confidence 12223333343 223456679999999999999999872 1 12 23444432211 111
Q ss_pred hhhccCC-CChhhhhc--cCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHH---cCCCCCCCCCCchhhhhhhcc-c-
Q 011913 335 MDLFINF-SDPLIAKK--FDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---GYKRPLWKAGSLPLGWVTFYK-H- 406 (475)
Q Consensus 335 ~~~~Ln~-s~p~i~~~--f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~---~~~~~l~~~~dq~~lN~~f~~-~- 406 (475)
-+..+-+ .+|.-... ++.+..|+.+|++==-.++.- ++++.+..-+.. ++-...|. |-.-+|-.|-. +
T Consensus 160 ~~~~fpYERrp~S~AyIp~~eGdfYy~Ga~~GG~~~~vl--~l~~~c~~~i~~D~~n~I~A~wH--DESHLNkYf~~~Kp 235 (271)
T cd02515 160 PRKQFPYERRPSSAAYIPEGEGDFYYHGAVFGGSVEEVY--RLTRACHEGILADKANGIEARWH--DESHLNKYFLLHKP 235 (271)
T ss_pred CCCCCCCcCCCCccccccCCCCCeEEeeeecCccHHHHH--HHHHHHHHHHHHHHhCCceEEee--cHhHhHHHHhhCCC
Confidence 0000001 11210111 345677888888754444443 255666665544 22223564 44456766644 3
Q ss_pred eeEecccccccc
Q 011913 407 TMALDKRWHVLG 418 (475)
Q Consensus 407 i~~Ld~~WN~~~ 418 (475)
++.|++.|++..
T Consensus 236 ~KiLSPeY~w~e 247 (271)
T cd02515 236 TKVLSPEYLWDD 247 (271)
T ss_pred CeecChhhcCCc
Confidence 899999988874
No 32
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=83.03 E-value=5.4 Score=34.40 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCCh-HHHHHHHHHHHHHHHHHHHHHHhhH
Q 011913 62 SHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDC-SAMATKLRAMTYNAEERVRLQKNQA 138 (475)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kl~~~~~~~e~~~~~~~~~~ 138 (475)
.++.-||+.-+.++|.+|......+ -.++.+.=.+.+..|.++|...-+- ..++.+-|+++..+|+-|+.+-=|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a--~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~ 86 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLA--GDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQG 86 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 7888899999999999999776655 3355555566778888888777776 7889999999999999998765554
No 33
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=79.37 E-value=51 Score=34.37 Aligned_cols=203 Identities=12% Similarity=0.101 Sum_probs=100.0
Q ss_pred CCceeEEEEcCcchh--HHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCC-cccchhhh
Q 011913 183 PDLHHYAVFSDNVLA--CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNF-NWLSTKYN 259 (475)
Q Consensus 183 ~~~ihIv~~sDn~la--~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~-~~l~~~~~ 259 (475)
+-.|-+++++-..|. +---+.|.=++=-...++.+||+||..+.-. ......+.++.++.+... .|-+ .
T Consensus 98 n~tIGL~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP-----~i~l~~~r~~~V~~v~~~~~Wqd--~- 169 (337)
T PF03414_consen 98 NITIGLTVFATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVP-----RIELGPGRRLKVFEVQEEKRWQD--I- 169 (337)
T ss_dssp T-EEEEEEEE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS-----------TTEEEEEEE-SGGSSHHH--H-
T ss_pred CceEEEEEEecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCC-----ccccCCCceeEEEEecccCCCcc--c-
Confidence 334555555555543 5556777777765556799999999754211 011134566777776531 1211 0
Q ss_pred hhhhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhcc
Q 011913 260 ATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFI 339 (475)
Q Consensus 260 pvl~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~L 339 (475)
.+ .-+.++..+-.-.++.++|-+.++|+|+++++++.. +.=|..+|...--.- ++-+..+
T Consensus 170 -sm----------~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F~~~vGv----E~Lg~lva~LHp~~y-----~~~~~~F 229 (337)
T PF03414_consen 170 -SM----------MRMEMISEHIEQHIQHEVDYLFCMDVDMVFQDHVGV----EILGDLVATLHPWFY-----FKPRESF 229 (337)
T ss_dssp -HH----------HHHHHHHHHHHHCHHHH-SEEEEEESSEEE-S-B-G----GG-SSEEEEESTTTT-----TSTGGGS
T ss_pred -hh----------HHHHHHHHHHHHHHhhcCCEEEEEecceEEecccCH----HHHHHHHHHhCHHHH-----CCChhhC
Confidence 00 011222333345567789999999999999998774 111667776643221 1100101
Q ss_pred CC-CChhhhhc--cCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHH---cCCCCCCCCCCchhhhhhhc--cceeEec
Q 011913 340 NF-SDPLIAKK--FDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---GYKRPLWKAGSLPLGWVTFY--KHTMALD 411 (475)
Q Consensus 340 n~-s~p~i~~~--f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~---~~~~~l~~~~dq~~lN~~f~--~~i~~Ld 411 (475)
.+ .+|.-... ++.+..|+.+|++==-..+.- ++++.++.-+.. ++=...|. |-.-||-.|- ..++.|+
T Consensus 230 pYERrp~S~AyIp~~eGDfYY~ga~fGGt~~~vl--~Lt~~c~~~i~~D~~n~I~A~Wh--DESHLNKYfl~~KPtKvLS 305 (337)
T PF03414_consen 230 PYERRPKSQAYIPYGEGDFYYHGAFFGGTVEEVL--RLTEACHQGIMQDKANGIEALWH--DESHLNKYFLYHKPTKVLS 305 (337)
T ss_dssp --B-STTSTTB--TT--S--EECCEEEECHHHHH--HHHHHHHHHHHHHHHTT---TTC--HHHHHHHHHHHS--SEEE-
T ss_pred ccccCccccccccCCCCCeEEeceecCCcHHHHH--HHHHHHHHHHHhhhhcCceEecc--chhhhHHHHhhCCCceecC
Confidence 01 11211111 345778888888765555543 366667666543 33335574 4456787663 3489999
Q ss_pred cccccc
Q 011913 412 KRWHVL 417 (475)
Q Consensus 412 ~~WN~~ 417 (475)
+.|++-
T Consensus 306 PEY~Wd 311 (337)
T PF03414_consen 306 PEYCWD 311 (337)
T ss_dssp GGGSBS
T ss_pred HHHccC
Confidence 998876
No 34
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=78.92 E-value=2.6 Score=44.22 Aligned_cols=152 Identities=10% Similarity=0.016 Sum_probs=80.9
Q ss_pred ccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHh--hhhh-ccCCCChh-----hhhccCC--CCCc
Q 011913 287 FPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFR--RMDL-FINFSDPL-----IAKKFDV--KACT 356 (475)
Q Consensus 287 lP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~--r~~~-~Ln~s~p~-----i~~~f~~--~~~y 356 (475)
|.++++++|+|.|+.+..++...+++-.+ .-.+...|..-....+ .+.. +....++. ....+.. ..+.
T Consensus 122 ~~~~~a~i~~~~~i~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~~~~~l~~~ 199 (369)
T KOG1950|consen 122 LIEDGAAIYLVDDIQRFRNDDANFDVPNE--LNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLFATNILPLI 199 (369)
T ss_pred eeccCceEEEecchhhccCccccccccch--hcccccceeeecccccceEEeccchhcCChhhhhhhchhhccCCCccce
Confidence 56789999999999999999998876432 1112222221100000 0111 11111210 0112333 3456
Q ss_pred eeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEecccccccc-cCCCCC--Cc--hhhcc
Q 011913 357 WAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLG-LGYDSG--VA--RRDIE 431 (475)
Q Consensus 357 fNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~-lgy~~~--~~--~~~~~ 431 (475)
||+|++++-...-- +..+........-+.+++|.+++..|...-.+.|+..|..- .++... .. .....
T Consensus 200 ~n~~~~v~~ps~~~-------~~~~~~~~~~~~~~~~~~q~~l~~~f~~~~~~~~~~~n~~~~~~~~~p~~~~l~~~~~~ 272 (369)
T KOG1950|consen 200 FNSGLLVFEPSLCN-------YKDLMEFSEEFESYNGADQGFLHLIFSWIPDRPPPSVNLNLAKLWRHPKKNDLSRASSV 272 (369)
T ss_pred eccCccccCCCccc-------hhhHHHhhcccCCCCCccchhhHHHhhcccCCCcccccccccccccCccccchhhcccc
Confidence 99999998655422 22233333333345677888899998765557787777762 222211 11 11112
Q ss_pred CCeEEEccCCCCCccc
Q 011913 432 QAAVIHYDGVMKPWLE 447 (475)
Q Consensus 432 ~a~IIHy~G~~KPW~~ 447 (475)
.-..+||.|..|||..
T Consensus 273 ~~~~~~y~~~~~p~~~ 288 (369)
T KOG1950|consen 273 LRYALHYLGANKPELC 288 (369)
T ss_pred cchhhhccccCCCCcc
Confidence 2344599997566654
No 35
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=76.91 E-value=9.4 Score=37.10 Aligned_cols=111 Identities=13% Similarity=0.151 Sum_probs=78.6
Q ss_pred cccccCchHHHHHHHHHHHHHHHHH--hhCCCCCChHHHHHHHHHHHHHHHHhccc--cCCCcccHHHHHHHHHHHHHHH
Q 011913 29 ASLLRVSDEKIKEMKDQVIRAQAYL--NFAPPGSNSHLVKELKLRIKEVERAVGAA--TKDSDLSRRAFRRMNQMEATLD 104 (475)
Q Consensus 29 ~~~~~~~~~~~~~~~d~~~~a~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 104 (475)
.||.++-|..++.|+|+|.-||.=+ .+|....-.+=..++...+.+.+.---.| ..+.+|-..+......-+..+.
T Consensus 23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~ 102 (219)
T TIGR02977 23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAE 102 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788888999999999999888744 44444444444455555565554432222 3455787888777777777777
Q ss_pred HhhcccCChHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 011913 105 KASHVYPDCSAMATKLRAMTYNAEERVRLQKNQAT 139 (475)
Q Consensus 105 ~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~ 139 (475)
..+...-.-...+.+|+.-+..+|.++...+.+..
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888889999999999998887765544
No 36
>PRK10132 hypothetical protein; Provisional
Probab=74.94 E-value=18 Score=31.49 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 011913 62 SHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQAT 139 (475)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~ 139 (475)
++|..||+.=+.++|.+|.++..++ -+.+.+.=.+.+..|..+|+...|...+..+.|.....+++-++.+--++.
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~--~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv 90 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDA--KGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV 90 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 6889999999999999987665544 234455555677889999988888888878889999999999987665543
No 37
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.79 E-value=19 Score=34.68 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=79.1
Q ss_pred cccccCchHHHHHHHHHHHHHHHHH--hhCCCCCChHHHHHHHHHHHHHHHHhccc--cCCCcccHHHHHHHHHHHHHHH
Q 011913 29 ASLLRVSDEKIKEMKDQVIRAQAYL--NFAPPGSNSHLVKELKLRIKEVERAVGAA--TKDSDLSRRAFRRMNQMEATLD 104 (475)
Q Consensus 29 ~~~~~~~~~~~~~~~d~~~~a~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 104 (475)
.+|.++-|..++.|.++|.-|+.=+ .+|....-.+-..+....+.+.+.-...| ..+.+|=..+.......+..+.
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~ 101 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE 101 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4787778999999999999888733 33333333333344444455544433333 4455788888888888888888
Q ss_pred HhhcccCChHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 011913 105 KASHVYPDCSAMATKLRAMTYNAEERVRLQKNQAT 139 (475)
Q Consensus 105 ~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~ 139 (475)
..+...-....-+.+|+.-+..+|.++...+.+-.
T Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999998887665543
No 38
>PRK10698 phage shock protein PspA; Provisional
Probab=67.55 E-value=21 Score=34.91 Aligned_cols=110 Identities=12% Similarity=0.167 Sum_probs=76.8
Q ss_pred cccccCchHHHHHHHHHHHHHHHHH--hhCCCCCChHHHHHHHHHHHHHHHHhccc--cCCCcccHHHHHHHHHHHHHHH
Q 011913 29 ASLLRVSDEKIKEMKDQVIRAQAYL--NFAPPGSNSHLVKELKLRIKEVERAVGAA--TKDSDLSRRAFRRMNQMEATLD 104 (475)
Q Consensus 29 ~~~~~~~~~~~~~~~d~~~~a~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 104 (475)
.||.++-|..++.|+|++.=+|.=+ .+|....-.+-..++...+.+.++--.-| .++-+|-..++..-+.....+.
T Consensus 23 EDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 23 EDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4888888999999999998877633 44444444444445555555544422222 3455787887776677777777
Q ss_pred HhhcccCChHHHHHHHHHHHHHHHHHHHHHHhhH
Q 011913 105 KASHVYPDCSAMATKLRAMTYNAEERVRLQKNQA 138 (475)
Q Consensus 105 ~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~ 138 (475)
..+...-.....+.+|+.-+..++.++..++.+-
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888889999999999999988766543
No 39
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=67.20 E-value=2.7 Score=44.14 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=23.5
Q ss_pred hhhHHhhhhccccCCCeEEEEecCeeeccccHHhhc
Q 011913 276 LNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWN 311 (475)
Q Consensus 276 ~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~ 311 (475)
.+..|+.+=.=+-. ||||+|+||.++++.|=+
T Consensus 228 Sdl~RLA~LyKYGG----vYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 228 SDLSRLALLYKYGG----VYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHHHHHhCC----EEeeccEEEecccccccc
Confidence 45677765333332 799999999999999854
No 40
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=64.38 E-value=66 Score=26.69 Aligned_cols=44 Identities=9% Similarity=-0.071 Sum_probs=29.1
Q ss_pred EEcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhh
Q 011913 190 VFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLL 235 (475)
Q Consensus 190 ~~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~ 235 (475)
.+.++.-.+.-++.|+..... ....+.|++++.+.+....+...
T Consensus 4 ~~~~~~~~l~~~l~s~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~ 47 (156)
T cd00761 4 PAYNEEPYLERCLESLLAQTY--PNFEVIVVDDGSTDGTLEILEEY 47 (156)
T ss_pred eecCcHHHHHHHHHHHHhCCc--cceEEEEEeCCCCccHHHHHHHH
Confidence 344444446778889888765 24778899988776655555443
No 41
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=59.04 E-value=98 Score=26.41 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=52.7
Q ss_pred cCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCCCCCC
Q 011913 192 SDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPR 271 (475)
Q Consensus 192 sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~~~~~ 271 (475)
.+..-.+.-++.|+.+... ....+.|+.|+-+.+..+.+..... ....++++..++-
T Consensus 7 ~n~~~~l~~~l~sl~~q~~--~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n-------------------- 63 (169)
T PF00535_consen 7 YNEAEYLERTLESLLKQTD--PDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPEN-------------------- 63 (169)
T ss_dssp SS-TTTHHHHHHHHHHHSG--CEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCC--------------------
T ss_pred eCCHHHHHHHHHHHhhccC--CCEEEEEeccccccccccccccccc-ccccccccccccc--------------------
Confidence 3443347788899998833 3688888888775444333332211 3455666655421
Q ss_pred ccchhhhHHhhhhccccCCCeEEEEecCeeeccc-cHHhhcc
Q 011913 272 YTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNI 312 (475)
Q Consensus 272 ~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~i 312 (475)
.. ..-.+-..-+... -+-|+++|+|.++..+ |..|.+.
T Consensus 64 -~g-~~~~~n~~~~~a~-~~~i~~ld~D~~~~~~~l~~l~~~ 102 (169)
T PF00535_consen 64 -LG-FSAARNRGIKHAK-GEYILFLDDDDIISPDWLEELVEA 102 (169)
T ss_dssp -SH-HHHHHHHHHHH---SSEEEEEETTEEE-TTHHHHHHHH
T ss_pred -cc-ccccccccccccc-eeEEEEeCCCceEcHHHHHHHHHH
Confidence 01 1112222222222 2599999999999888 7778774
No 42
>PRK10807 paraquat-inducible protein B; Provisional
Probab=58.39 E-value=31 Score=38.33 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=25.7
Q ss_pred cccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHH
Q 011913 87 DLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRL 133 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~ 133 (475)
.||.++.+.+++++.++..++ .|.. .-..|+++++.+++-++.
T Consensus 473 ~Lp~~L~~TL~~l~~~l~~~~---~~s~-~~~~l~~tl~~l~~~~r~ 515 (547)
T PRK10807 473 QLPADMQKTLRELNRSMQGFQ---PGSP-AYNKMVADMQRLDQVLRE 515 (547)
T ss_pred HHHHHHHHHHHHHHHHHhhcC---CCCh-HHHHHHHHHHHHHHHHHH
Confidence 456666666666666665543 3333 336667777777666664
No 43
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=56.93 E-value=35 Score=33.56 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=67.9
Q ss_pred ccccccCchHHHHHHHHHHHHHHHHH--hhCCCCCChHHHHHHHHHHHHHHHHhccc--cCCCcccHHHHHHHHHHHHHH
Q 011913 28 QASLLRVSDEKIKEMKDQVIRAQAYL--NFAPPGSNSHLVKELKLRIKEVERAVGAA--TKDSDLSRRAFRRMNQMEATL 103 (475)
Q Consensus 28 ~~~~~~~~~~~~~~~~d~~~~a~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 103 (475)
.-+|.++-|..++.|+++|.-|+-=+ .||....-.+=+.++..+..+.|.---.| ..+.+|-.++...+...+..+
T Consensus 22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~ 101 (225)
T COG1842 22 AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLA 101 (225)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34777777888898988887766533 22222211222223333344433321111 334467777778888888877
Q ss_pred HHhhcccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 011913 104 DKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQ 137 (475)
Q Consensus 104 ~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~ 137 (475)
..-+...-.......+|+..+..+|.++...+.+
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777778888888888888887655443
No 44
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=56.33 E-value=1.4e+02 Score=28.21 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=56.3
Q ss_pred CceeEEEEcCcc-hhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhh
Q 011913 184 DLHHYAVFSDNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 262 (475)
Q Consensus 184 ~~ihIv~~sDn~-la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl 262 (475)
..+-|++.+=|. -.+.-+|.|+......+..+.+.|+.|+-++...+........ .+.++..+.
T Consensus 29 ~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~------------ 93 (251)
T cd06439 29 PTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPE------------ 93 (251)
T ss_pred CEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCC------------
Confidence 346677765554 3477788998876543334777777777655444332222211 344433221
Q ss_pred hccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccc-cHHhhcc
Q 011913 263 KKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNI 312 (475)
Q Consensus 263 ~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~i 312 (475)
+. +...-....+... .-+-|+++|+|+++..+ |..|++.
T Consensus 94 ------~~---g~~~a~n~gi~~a--~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 94 ------RR---GKAAALNRALALA--TGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred ------CC---ChHHHHHHHHHHc--CCCEEEEEccccCcCHHHHHHHHHH
Confidence 00 0100011222222 13889999999999766 7777764
No 45
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=56.27 E-value=1.3e+02 Score=25.84 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCCCCCCccchh
Q 011913 197 ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSAL 276 (475)
Q Consensus 197 a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~~~~~~~S~~ 276 (475)
.+.-++.|+..... ....+.|+.|+-+.+....+....+ .+.++..+. + ....
T Consensus 11 ~l~~~l~sl~~~~~--~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~------~---------------~g~~ 63 (166)
T cd04186 11 YLKACLDSLLAQTY--PDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGE------N---------------LGFG 63 (166)
T ss_pred HHHHHHHHHHhccC--CCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCC------C---------------cChH
Confidence 47778999988765 2467788888766554444333221 343332221 0 0000
Q ss_pred hhHHhhhhccccCCCeEEEEecCeeeccc-cHHhhc
Q 011913 277 NHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWN 311 (475)
Q Consensus 277 ~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~ 311 (475)
.-...-+.. . ..+-++++|+|.++..+ +..+.+
T Consensus 64 ~a~n~~~~~-~-~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 64 AGNNQGIRE-A-KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred HHhhHHHhh-C-CCCEEEEECCCcEECccHHHHHHH
Confidence 001111111 1 57899999999999766 555554
No 46
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=55.64 E-value=1.2e+02 Score=25.87 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHH
Q 011913 196 LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAIS 230 (475)
Q Consensus 196 la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~ 230 (475)
-.+.-++.|++.... ....+.|+.++-+.....
T Consensus 10 ~~l~~~l~sl~~q~~--~~~~iivvdd~s~d~t~~ 42 (180)
T cd06423 10 AVIERTIESLLALDY--PKLEVIVVDDGSTDDTLE 42 (180)
T ss_pred HHHHHHHHHHHhCCC--CceEEEEEeCCCccchHH
Confidence 346678899988765 247888888876654433
No 47
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=53.71 E-value=37 Score=32.86 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=19.8
Q ss_pred cCCCeEEEEecCeeeccc-cHHhhc
Q 011913 288 PALNKVLLFDHDVVVQSD-LGRLWN 311 (475)
Q Consensus 288 P~ldKVLYLD~DvIV~~D-LseLw~ 311 (475)
...+-|+++|+|+++..| |..+..
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~ 96 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYK 96 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHH
Confidence 357999999999999888 566665
No 48
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=53.38 E-value=76 Score=26.10 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhccccC--CCcccHHHHHHHHHHHHHHHHhhccc--CChHHHHHHHHHHHHHHHHHHHHHH
Q 011913 66 KELKLRIKEVERAVGAATK--DSDLSRRAFRRMNQMEATLDKASHVY--PDCSAMATKLRAMTYNAEERVRLQK 135 (475)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kl~~~~~~~e~~~~~~~ 135 (475)
+++.-.|+-.|+++|-|+. |.++-+++.+.++.-..-+.+|++.. .|- .+...=...|+..|-|+..++
T Consensus 6 kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~-~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 6 KQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDE-PFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhc
Confidence 5667779999999999955 55666788888888887888887665 444 667778888888888888654
No 49
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=52.40 E-value=1.5e+02 Score=27.71 Aligned_cols=96 Identities=19% Similarity=0.138 Sum_probs=53.2
Q ss_pred eEEEEc-Ccc-hhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhc
Q 011913 187 HYAVFS-DNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 264 (475)
Q Consensus 187 hIv~~s-Dn~-la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~ 264 (475)
-|++.+ ++. -.+.-+|.|+...+ .+.+.|+.|+-+.+....+...... ..+.++..+.
T Consensus 3 sVvIp~~ne~~~~l~~~l~sl~~q~----~~eiivvdd~s~d~~~~~l~~~~~~--~~~~v~~~~~-------------- 62 (235)
T cd06434 3 TVIIPVYDEDPDVFRECLRSILRQK----PLEIIVVTDGDDEPYLSILSQTVKY--GGIFVITVPH-------------- 62 (235)
T ss_pred EEEEeecCCChHHHHHHHHHHHhCC----CCEEEEEeCCCChHHHHHHHhhccC--CcEEEEecCC--------------
Confidence 355544 444 34778899998866 3678888888776655444222222 2233322111
Q ss_pred cCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccc-cHHhhcc
Q 011913 265 ENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNI 312 (475)
Q Consensus 265 ~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~i 312 (475)
....... ..-+.. ...+-|++||+|+++..| |..+...
T Consensus 63 -----~g~~~a~---n~g~~~--a~~d~v~~lD~D~~~~~~~l~~l~~~ 101 (235)
T cd06434 63 -----PGKRRAL---AEGIRH--VTTDIVVLLDSDTVWPPNALPEMLKP 101 (235)
T ss_pred -----CChHHHH---HHHHHH--hCCCEEEEECCCceeChhHHHHHHHh
Confidence 0000001 111111 157999999999999877 6677754
No 50
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=50.96 E-value=1.2e+02 Score=27.93 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=24.0
Q ss_pred EcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCH
Q 011913 191 FSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNL 226 (475)
Q Consensus 191 ~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~ 226 (475)
+.+..-.+.-+|.|++..+..+..+.+.||.|+-+.
T Consensus 5 ~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d 40 (229)
T cd04192 5 ARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTD 40 (229)
T ss_pred ecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCc
Confidence 333333477889999887765445788888876544
No 51
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=50.28 E-value=40 Score=34.68 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=59.0
Q ss_pred CcEEEEEecCCCCHHHHHHHHhhCCCCC---ceEEEEEecCCcccchhhhhhhhccCCCCCCccchhhhHHhhhhccccC
Q 011913 213 EKIVFHVVTDSLNLPAISMWFLLNPPGK---ATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPA 289 (475)
Q Consensus 213 ~~i~fhIvtd~is~~~~~~~~~~~~~~~---~~I~~~~i~~~~~l~~~~~pvl~~~~~~~~~~~S~~~y~Rf~iPellP~ 289 (475)
.++.|.+++|..+...++.=-.. +..+ ..-+++.++.....+ |. ++. -+.+++...+||+
T Consensus 90 ~~vcf~mF~D~~t~~~l~~~~~~-~~~~~~ig~WrIv~v~~lp~~d----~r------r~~------r~~K~lpHrlfp~ 152 (305)
T PF04765_consen 90 KNVCFFMFVDEETLKSLESEGHI-PDENKKIGIWRIVVVKNLPYDD----PR------RNG------RIPKLLPHRLFPN 152 (305)
T ss_pred cCccEEEEEehhhHHHHHhcCCc-cccccccCceEEEEecCCCCcc----hh------hcC------cccceeccccCCC
Confidence 36899999999987766431111 1111 123455554321111 11 111 2347777889999
Q ss_pred CCeEEEEecCeeeccccHHhhccCC--CCCEEEEecc
Q 011913 290 LNKVLLFDHDVVVQSDLGRLWNIDM--KGKVIGAVDT 324 (475)
Q Consensus 290 ldKVLYLD~DvIV~~DLseLw~iDL--~g~~iaAV~d 324 (475)
++--||+|+-+.+.+|...|.+-=+ ++..+|+...
T Consensus 153 y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H 189 (305)
T PF04765_consen 153 YDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKH 189 (305)
T ss_pred CceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCC
Confidence 9999999999999999988776433 4566776543
No 52
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=47.64 E-value=28 Score=35.14 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=57.5
Q ss_pred CCCCCceeEEEEcCc-chh--HHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccch
Q 011913 180 LHNPDLHHYAVFSDN-VLA--CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLST 256 (475)
Q Consensus 180 ~~d~~~ihIv~~sDn-~la--~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~ 256 (475)
.+++..|.++=.... ..+ +-.++.|+-+++.+ ..++|+|+ ++++.+. ++.+
T Consensus 42 ~~~~k~IW~~W~QG~e~aP~~Vk~ci~s~~k~~~~---~~Vi~lt~----~Ni~~Yv-------------~~P~------ 95 (276)
T PF05704_consen 42 ETNEKIIWVCWWQGEENAPEIVKKCINSWRKNAPD---YEVILLTE----DNIKDYV-------------DIPD------ 95 (276)
T ss_pred CCCCCcEEEEECCCccccCHHHHHHHHHHHHHCCC---CeEEEECh----HHHHHHc-------------CCch------
Confidence 345555776665322 234 67799999999953 67888884 2333322 1121
Q ss_pred hhhhhhhccCCC--CCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhc
Q 011913 257 KYNATLKKENSH--DPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWN 311 (475)
Q Consensus 257 ~~~pvl~~~~~~--~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~ 311 (475)
+ +.+....+ ...++ +.++|+.|=.-... +|+|+++++.++|.+.+.
T Consensus 96 -~--i~~k~~~g~i~~a~~--SDilR~~LL~~yGG----vWiDatv~~t~~l~~~~~ 143 (276)
T PF05704_consen 96 -F--ILEKYEKGKISPAHF--SDILRLALLYKYGG----VWIDATVYLTKPLDDEIF 143 (276)
T ss_pred -h--HHHHHHcCCCchhHH--HHHHHHHHHHHcCc----EEeCCceEECCchhHHHh
Confidence 1 11111111 22233 46789987444443 899999999999998754
No 53
>PRK10404 hypothetical protein; Provisional
Probab=46.95 E-value=1e+02 Score=26.52 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=56.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChHH-HHHHHHHHHHHHHHHHHHHHh
Q 011913 58 PGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSA-MATKLRAMTYNAEERVRLQKN 136 (475)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~kl~~~~~~~e~~~~~~~~ 136 (475)
..+.+++..||+.-+.++|.++.++..++ -+.+.+.=...+..|..+|...-|... +..+.|++...+++-|+.+--
T Consensus 4 ~~~~~~l~~dl~~L~~dle~Ll~~~~~~a--~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw 81 (101)
T PRK10404 4 QFGDTRIDDDLTLLSETLEEVLRSSGDPA--DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPW 81 (101)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 35678899999999999999998766543 234445555567777777765555544 345689999999999987655
Q ss_pred hH
Q 011913 137 QA 138 (475)
Q Consensus 137 ~~ 138 (475)
|+
T Consensus 82 ~a 83 (101)
T PRK10404 82 QG 83 (101)
T ss_pred HH
Confidence 54
No 54
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=44.99 E-value=12 Score=31.69 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=27.8
Q ss_pred ccchhhhHHhhhhccccCCCeEEEEecCeeecccc-HHhh
Q 011913 272 YTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDL-GRLW 310 (475)
Q Consensus 272 ~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DL-seLw 310 (475)
+...+.++|+.+=-..-. ||+|.|+++.++| +++-
T Consensus 62 ~~~~sD~~R~~~L~~~GG----iY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 62 YAHKSDLLRYLVLYKYGG----IYLDLDVICLRPLDDPWL 97 (103)
T ss_pred hHHHHHHHHHHHHHHcCc----EEEeCccccCcchhhhhh
Confidence 445678899988666665 8999999999999 6553
No 55
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.81 E-value=2e+02 Score=26.06 Aligned_cols=99 Identities=13% Similarity=0.036 Sum_probs=50.6
Q ss_pred EEEcCcc-hhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCC
Q 011913 189 AVFSDNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS 267 (475)
Q Consensus 189 v~~sDn~-la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~ 267 (475)
++.+=|. -.+.-+|.|++..... .+.+.|+.|+-+....+.........+..+.++..+.
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~----------------- 63 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGK----------------- 63 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCC-----------------
Confidence 4433333 3467788899886543 5888888877654332222211111112232222211
Q ss_pred CCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccc-cHHhhcc
Q 011913 268 HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNI 312 (475)
Q Consensus 268 ~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~i 312 (475)
+.......+.. + ...+-+-|++||+|.++..+ |..+++.
T Consensus 64 -~~G~~~~~n~g---~--~~~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 64 -NLGVARNFESL---L--QAADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred -CccHHHHHHHH---H--HhCCCCEEEEECCCcccChhHHHHHHHH
Confidence 01111111111 1 12357999999999888765 8888875
No 56
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=38.58 E-value=1e+02 Score=25.37 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHH
Q 011913 65 VKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVR 132 (475)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~ 132 (475)
.+.+++-++|+++.+.. +..++.+..++++.++.+++...-|...-..++..+..+.++--.
T Consensus 21 l~~l~~~l~~~~~ti~~------l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDT------LQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555556666665553 344567777888888888888888888877777777777766443
No 57
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=38.50 E-value=1.2e+02 Score=25.07 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChH-HHHHHHHHHHHHHHHHHHHHHhhHH
Q 011913 63 HLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCS-AMATKLRAMTYNAEERVRLQKNQAT 139 (475)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kl~~~~~~~e~~~~~~~~~~~ 139 (475)
.+..||.+-+.+++.++..+...+ ...+.+.-..++..+..+++..-|.. .+..+.+.....+|+.++.+--++.
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~--~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~sv 77 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA--GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSV 77 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 455666666677777776554332 22334444445555555555444433 4678889999999999998777764
No 58
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=38.40 E-value=21 Score=34.86 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.7
Q ss_pred hhhccccCCCeEEEEecCeeeccc
Q 011913 282 YLPDVFPALNKVLLFDHDVVVQSD 305 (475)
Q Consensus 282 ~iPellP~ldKVLYLD~DvIV~~D 305 (475)
.+..+||+++-||+||+|+-|...
T Consensus 34 vva~~L~~~~~vlflDaDigVvNp 57 (222)
T PF03314_consen 34 VVAKILPEYDWVLFLDADIGVVNP 57 (222)
T ss_pred HHHHHhccCCEEEEEcCCceeecC
Confidence 567889999999999999998654
No 59
>PRK11204 N-glycosyltransferase; Provisional
Probab=36.93 E-value=2.7e+02 Score=29.10 Aligned_cols=114 Identities=12% Similarity=0.068 Sum_probs=59.3
Q ss_pred CCceeEEEEcCcc-hhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhh
Q 011913 183 PDLHHYAVFSDNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNAT 261 (475)
Q Consensus 183 ~~~ihIv~~sDn~-la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pv 261 (475)
...+-|++.+-|. -.+.-++.|+....- | ++.+.|+.|+-+++..+....... ....++++..++
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~~q~y-p-~~eiiVvdD~s~d~t~~~l~~~~~-~~~~v~~i~~~~----------- 118 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLLALRY-P-NYEVIAINDGSSDNTGEILDRLAA-QIPRLRVIHLAE----------- 118 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHhCCC-C-CeEEEEEECCCCccHHHHHHHHHH-hCCcEEEEEcCC-----------
Confidence 3457788876664 346678888876543 3 588888888766544333222211 111244443221
Q ss_pred hhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccc-cHHhhccCCCCCEEEEe
Q 011913 262 LKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNIDMKGKVIGAV 322 (475)
Q Consensus 262 l~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~iDL~g~~iaAV 322 (475)
+...-...+. -+. ....|-++++|+|.++..| |..+.+.=..+.-+|+|
T Consensus 119 -------n~Gka~aln~---g~~--~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v 168 (420)
T PRK11204 119 -------NQGKANALNT---GAA--AARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAV 168 (420)
T ss_pred -------CCCHHHHHHH---HHH--HcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEE
Confidence 0000001111 111 1247999999999999877 55555431123334554
No 60
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=36.64 E-value=54 Score=23.81 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHh
Q 011913 43 KDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAV 79 (475)
Q Consensus 43 ~d~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (475)
-.|+..-++|..=||..+.-.=+.=|..+++|++.-+
T Consensus 2 leQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~ 38 (42)
T PF11464_consen 2 LEQINIIESYIKQAKAARRFDEVATLEENLRELQDEI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4799999999988999999998999999999988654
No 61
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.23 E-value=2.9e+02 Score=25.11 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=15.3
Q ss_pred CCCeEEEEecCeeecccc
Q 011913 289 ALNKVLLFDHDVVVQSDL 306 (475)
Q Consensus 289 ~ldKVLYLD~DvIV~~DL 306 (475)
..+-++++|+|.++..+.
T Consensus 79 ~~d~v~~ld~D~~~~~~~ 96 (202)
T cd04185 79 GYDWIWLMDDDAIPDPDA 96 (202)
T ss_pred CCCEEEEeCCCCCcChHH
Confidence 479999999999997654
No 62
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.57 E-value=3.6e+02 Score=28.25 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH-----------HHHHhccccCCC-cccHHHHHHHHHHHHHHHHhh
Q 011913 40 KEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKE-----------VERAVGAATKDS-DLSRRAFRRMNQMEATLDKAS 107 (475)
Q Consensus 40 ~~~~d~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 107 (475)
.+|+.||+.++- .|+|.++..+-..++-.+.+| +.+-.+|-...+ .|-+++.+.++--..+....+
T Consensus 109 qkL~nqL~~~~~--vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 109 QKLKNQLFHVRE--VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HHHHHHHHHHHH--HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888998888 677887776655555544433 333333322221 244444444444444555566
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 011913 108 HVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLAS 146 (475)
Q Consensus 108 ~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~ 146 (475)
.-...-.+|.+|=.+-+-++|.+|+-.+-.=.=+-||+.
T Consensus 187 atf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 187 ATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 667777888888888888889988865544444445544
No 63
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=32.78 E-value=4.3e+02 Score=27.55 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=57.9
Q ss_pred CceeEEEEcCcch-hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHH---HHHHHhhCCCCCceEEEEEecCCcccchhhh
Q 011913 184 DLHHYAVFSDNVL-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPA---ISMWFLLNPPGKATIQIQSIDNFNWLSTKYN 259 (475)
Q Consensus 184 ~~ihIv~~sDn~l-a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~---~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~ 259 (475)
..+-|++.+-|.- .+.-++.|+....- |..+.+.|+.|+-++.. ++.+....+ ....++++..+. .+..+
T Consensus 40 p~VSVIIpa~Ne~~~L~~~L~sL~~q~y-p~~~eIIVVDd~StD~T~~i~~~~~~~~~-~~~~i~vi~~~~---~~~g~- 113 (384)
T TIGR03469 40 PAVVAVVPARNEADVIGECVTSLLEQDY-PGKLHVILVDDHSTDGTADIARAAARAYG-RGDRLTVVSGQP---LPPGW- 113 (384)
T ss_pred CCEEEEEecCCcHhHHHHHHHHHHhCCC-CCceEEEEEeCCCCCcHHHHHHHHHHhcC-CCCcEEEecCCC---CCCCC-
Confidence 3477888776653 47788899987543 33577888887665433 333322111 112455554321 01010
Q ss_pred hhhhccCCCCCCccchhhh-HHhhhhccccCCCeEEEEecCeeeccc-cHHhhc
Q 011913 260 ATLKKENSHDPRYTSALNH-LRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWN 311 (475)
Q Consensus 260 pvl~~~~~~~~~~~S~~~y-~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~ 311 (475)
..+... .+. ++. ..+..++.|-++++|+|+++..| |..+-.
T Consensus 114 ---------~Gk~~A-~n~g~~~-A~~~~~~gd~llflDaD~~~~p~~l~~lv~ 156 (384)
T TIGR03469 114 ---------SGKLWA-VSQGIAA-ARTLAPPADYLLLTDADIAHGPDNLARLVA 156 (384)
T ss_pred ---------cchHHH-HHHHHHH-HhccCCCCCEEEEECCCCCCChhHHHHHHH
Confidence 000000 111 111 12233447899999999999654 466654
No 64
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=31.68 E-value=27 Score=36.23 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=18.6
Q ss_pred ccCCCCCceeeeeEEEechHHHHh
Q 011913 349 KFDVKACTWAFGMNLFDLQEWRKR 372 (475)
Q Consensus 349 ~f~~~~~yfNsGVmLinL~~wR~~ 372 (475)
.+..+.+||||||.+|.-..+.++
T Consensus 186 yv~sG~y~WNSGmF~Fra~~~l~e 209 (333)
T COG0836 186 YVESGEYLWNSGMFLFRASVFLEE 209 (333)
T ss_pred HHHcCceEeeccceEEEHHHHHHH
Confidence 345677999999999987776543
No 65
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.30 E-value=1.6e+02 Score=29.11 Aligned_cols=110 Identities=9% Similarity=0.125 Sum_probs=67.8
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Q 011913 49 AQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAE 128 (475)
Q Consensus 49 a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e 128 (475)
++.+-.++...+.+++..|++..+.+| +.|-..-.+-=..+.+=+..||.+|..+++..-.....+.++..-+..+-
T Consensus 18 ~~i~~e~~~~e~ee~~L~e~~kE~~~L---~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 18 NEILQEVESLENEEKCLEEYRKEMEEL---LQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566667778888887665554 22211111112345677788999999999988888888888888888888
Q ss_pred HHHHHHHhhHHHHHHHhhccCCccccchhhhccHHHHh
Q 011913 129 ERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFA 166 (475)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~ 166 (475)
+++...++.- ++-..+|-..-==...++.+||.
T Consensus 95 ~~in~~R~e~-----lgl~~Lp~l~eE~~~~~~~~~~~ 127 (230)
T PF10146_consen 95 DEINELRKEY-----LGLEPLPSLEEEELSKISPDYLQ 127 (230)
T ss_pred HHHHHHHHHH-----cCCCCCCccccccccccCHHHhh
Confidence 8888765442 44444444331112344555554
No 66
>PF11380 DUF3184: Protein of unknown function (DUF3184); InterPro: IPR021520 This eukaryotic family of proteins has no known function. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=27.98 E-value=1.6e+02 Score=32.94 Aligned_cols=25 Identities=16% Similarity=0.418 Sum_probs=20.0
Q ss_pred cC-CCeEEEEecCeeeccccHH--hhcc
Q 011913 288 PA-LNKVLLFDHDVVVQSDLGR--LWNI 312 (475)
Q Consensus 288 P~-ldKVLYLD~DvIV~~DLse--Lw~i 312 (475)
|. -+..||+-+|+.+.+++.. +|+-
T Consensus 99 pgLSE~FIYfNDD~F~~rpV~p~DFF~~ 126 (691)
T PF11380_consen 99 PGLSEHFIYFNDDYFFNRPVDPTDFFNE 126 (691)
T ss_pred CCccceeEEecCCEEEcCcCCHHHhhcc
Confidence 55 5899999999999998765 5543
No 67
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=27.04 E-value=5.4e+02 Score=24.29 Aligned_cols=46 Identities=9% Similarity=-0.021 Sum_probs=29.0
Q ss_pred eeEEEEcCcc-hhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHH
Q 011913 186 HHYAVFSDNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISM 231 (475)
Q Consensus 186 ihIv~~sDn~-la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~ 231 (475)
+-|++.+-|. -.+.-+|.|+....-.+..+.+.||.|+-++.....
T Consensus 3 vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i 49 (241)
T cd06427 3 YTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAA 49 (241)
T ss_pred EEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHH
Confidence 4567766554 346778889877544334577777777766555443
No 68
>PRK15383 type III secretion system protein; Provisional
Probab=26.58 E-value=32 Score=34.28 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=19.8
Q ss_pred CeEEEEecCeeeccccHHhhccC
Q 011913 291 NKVLLFDHDVVVQSDLGRLWNID 313 (475)
Q Consensus 291 dKVLYLD~DvIV~~DLseLw~iD 313 (475)
+-+||||+|||+.+-|--|+.-|
T Consensus 220 ~GCIYLD~DMilT~KLG~ly~PD 242 (335)
T PRK15383 220 GGCIYLDADMLLTDKLGTLYLPD 242 (335)
T ss_pred CceEEeecceeeecccccEEcCC
Confidence 55899999999999999888543
No 69
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=26.46 E-value=32 Score=34.25 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=19.8
Q ss_pred CeEEEEecCeeeccccHHhhccC
Q 011913 291 NKVLLFDHDVVVQSDLGRLWNID 313 (475)
Q Consensus 291 dKVLYLD~DvIV~~DLseLw~iD 313 (475)
+-+||||+|||+.+-|--|+.-|
T Consensus 212 ~GCIYLD~DMilT~KLG~ly~PD 234 (326)
T PRK15382 212 EGCIYLDADMIITDKLGVLYAPD 234 (326)
T ss_pred CceEEeecceeeecccccEEcCC
Confidence 56899999999999999888543
No 70
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=26.41 E-value=3.9e+02 Score=26.38 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=51.5
Q ss_pred EEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHh-hCCCCCceEEEEEecCCcccchhhhhhhhc
Q 011913 188 YAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFL-LNPPGKATIQIQSIDNFNWLSTKYNATLKK 264 (475)
Q Consensus 188 Iv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~-~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~ 264 (475)
|++.+-|.- .+.-+|.|++.++..+..+.+-||.|+-+......+.. ........+.++..+.- ..+
T Consensus 2 IIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n----~G~------ 71 (299)
T cd02510 2 VIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKR----EGL------ 71 (299)
T ss_pred EEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCC----CCH------
Confidence 445444433 46778999998765432346777777766554443322 00011123444433320 011
Q ss_pred cCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeec-cccHHhhc
Q 011913 265 ENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQ-SDLGRLWN 311 (475)
Q Consensus 265 ~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~-~DLseLw~ 311 (475)
+ .+|-..-.. -.-+-|++||+|+++. +-|..|.+
T Consensus 72 ---------~---~a~N~g~~~-A~gd~i~fLD~D~~~~~~wL~~ll~ 106 (299)
T cd02510 72 ---------I---RARIAGARA-ATGDVLVFLDSHCEVNVGWLEPLLA 106 (299)
T ss_pred ---------H---HHHHHHHHH-ccCCEEEEEeCCcccCccHHHHHHH
Confidence 1 011111111 1358999999999995 44555655
No 71
>PRK15384 type III secretion system protein; Provisional
Probab=26.24 E-value=32 Score=34.33 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=19.7
Q ss_pred CeEEEEecCeeeccccHHhhccC
Q 011913 291 NKVLLFDHDVVVQSDLGRLWNID 313 (475)
Q Consensus 291 dKVLYLD~DvIV~~DLseLw~iD 313 (475)
+-+||||+|||+.+-|.-|+.-|
T Consensus 217 ~GCIYLDaDMilT~KLG~ly~PD 239 (336)
T PRK15384 217 SGCIYLDADMIITEKLGGIYIPD 239 (336)
T ss_pred CceEEeeccceeecccccEEcCC
Confidence 45899999999999999888543
No 72
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.26 E-value=95 Score=29.71 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=28.3
Q ss_pred cccccccccCcccccccccCchHHHHHHHHHHHHHHHHHh
Q 011913 15 QTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLN 54 (475)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~y~~ 54 (475)
||||..|-+-.-+.|+|. =.+--+|+|++-+.--|+.
T Consensus 76 qTn~~~a~~lekl~Sq~~---~~lctR~Q~Hl~~cA~aVA 112 (217)
T KOG4515|consen 76 QTNQGAAYTLEKLSSQPF---FRLCTRLQEHLAVCAKAVA 112 (217)
T ss_pred CCCcchHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHH
Confidence 899988887778888873 3456678999988766664
No 73
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=25.03 E-value=3.7e+02 Score=26.53 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=31.8
Q ss_pred hhhHHhhhhccccCCCeEEEEecCeeeccc-cHHhhccCCCCCEEEEecc
Q 011913 276 LNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNIDMKGKVIGAVDT 324 (475)
Q Consensus 276 ~~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~iDL~g~~iaAV~d 324 (475)
...++-++...-..++-|+.+|+|+++..| |..+...=..+.-+|+|..
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~ 131 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQT 131 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeC
Confidence 344455554433457999999999999877 6666653223455777753
No 74
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.02 E-value=74 Score=20.15 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhccc
Q 011913 65 VKELKLRIKEVERAVGAA 82 (475)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~ 82 (475)
+..|+.+|.++|+-|++.
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456888999999888764
No 75
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=24.82 E-value=2.1e+02 Score=32.90 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=63.0
Q ss_pred ceeEEEEcCc-ch----h-HHHHHHHHHhhcCCCCcEEEEEecCCCCHHHH----HHHHhhCC-C-CCceEEEEEecCCc
Q 011913 185 LHHYAVFSDN-VL----A-CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAI----SMWFLLNP-P-GKATIQIQSIDNFN 252 (475)
Q Consensus 185 ~ihIv~~sDn-~l----a-~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~----~~~~~~~~-~-~~~~I~~~~i~~~~ 252 (475)
.+-|++-+=| .. + +.+++.|+..... +.++.|+|+.|+-+.+.. ..|..++. + .+.++.+..-.+
T Consensus 125 ~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~-~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~-- 201 (691)
T PRK05454 125 RTAILMPIYNEDPARVFAGLRAMYESLAATGH-GAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR-- 201 (691)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHHHhcCC-CCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc--
Confidence 4566665443 22 2 5667778876544 357999999997664321 11222221 1 122333321110
Q ss_pred ccchhhhhhhhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccc-cHHhhccCCCCCEEEEecc
Q 011913 253 WLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWNIDMKGKVIGAVDT 324 (475)
Q Consensus 253 ~l~~~~~pvl~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~iDL~g~~iaAV~d 324 (475)
+ ...+--....+.|.+- ..+|-|+.||+|+++.+| |..+-..=..+.-+|+|..
T Consensus 202 --n------------~~~KaGNl~~~~~~~~----~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt 256 (691)
T PRK05454 202 --N------------VGRKAGNIADFCRRWG----GAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQT 256 (691)
T ss_pred --C------------CCccHHHHHHHHHhcC----CCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeC
Confidence 0 1112223333343322 468999999999999998 4555543112345678764
No 76
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=24.59 E-value=5e+02 Score=27.63 Aligned_cols=47 Identities=9% Similarity=-0.126 Sum_probs=32.8
Q ss_pred CceeEEEEcCcch-hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHH
Q 011913 184 DLHHYAVFSDNVL-ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAIS 230 (475)
Q Consensus 184 ~~ihIv~~sDn~l-a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~ 230 (475)
..+-|++.+-|.- .+.-+|.|+...+-.+.++.+.|+.|+.+++..+
T Consensus 49 P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~ 96 (439)
T TIGR03111 49 PDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQ 96 (439)
T ss_pred CCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHH
Confidence 3578888776653 4677889988766544567888888877665543
No 77
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=24.35 E-value=5.8e+02 Score=27.14 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=54.6
Q ss_pred CceeEEEEcCcc-hhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhh-CCCCCceEEEEEecCCcccchhhhhh
Q 011913 184 DLHHYAVFSDNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLL-NPPGKATIQIQSIDNFNWLSTKYNAT 261 (475)
Q Consensus 184 ~~ihIv~~sDn~-la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~-~~~~~~~I~~~~i~~~~~l~~~~~pv 261 (475)
..+-|++.+-|. -.+.-+|.|+++..- | ++.+.|+.|+-+++..+..... ...+ .++++..+.
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sll~q~y-p-~~eIivVdDgs~D~t~~~~~~~~~~~~--~v~vv~~~~----------- 139 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAALAQTY-T-NIEVIAINDGSSDDTAQVLDALLAEDP--RLRVIHLAH----------- 139 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHcCCC-C-CeEEEEEECCCCccHHHHHHHHHHhCC--CEEEEEeCC-----------
Confidence 357777765553 446678889876543 3 5888999887655433322221 1112 345544332
Q ss_pred hhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccc-cHHhh
Q 011913 262 LKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLW 310 (475)
Q Consensus 262 l~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw 310 (475)
+...-...++. +. ....|-++.+|+|.++..| |..+-
T Consensus 140 -------n~Gka~AlN~g---l~--~a~~d~iv~lDAD~~~~~d~L~~lv 177 (444)
T PRK14583 140 -------NQGKAIALRMG---AA--AARSEYLVCIDGDALLDKNAVPYLV 177 (444)
T ss_pred -------CCCHHHHHHHH---HH--hCCCCEEEEECCCCCcCHHHHHHHH
Confidence 00001111221 11 1357999999999999877 34443
No 78
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=23.91 E-value=1.8e+02 Score=25.59 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhccccCCCcccHHH----HHHHHHHHHHHHHhhccc
Q 011913 67 ELKLRIKEVERAVGAATKDSDLSRRA----FRRMNQMEATLDKASHVY 110 (475)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 110 (475)
+|+.+|++++|.|..- +||+.+ ...+++++..+..+....
T Consensus 1 klK~riRdieRLL~r~----~Lp~~vR~~~Er~L~~L~~~l~~~~~~~ 44 (114)
T PF10153_consen 1 KLKKRIRDIERLLKRK----DLPADVRVEKERELEALKRELEEAERKE 44 (114)
T ss_pred CHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999754 677755 455666666666654433
No 79
>PRK14156 heat shock protein GrpE; Provisional
Probab=22.70 E-value=88 Score=29.66 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHH-HHhhCC----------CCCChHHHHHHHHHHHHHHHHhcc
Q 011913 36 DEKIKEMKDQVIRAQA-YLNFAP----------PGSNSHLVKELKLRIKEVERAVGA 81 (475)
Q Consensus 36 ~~~~~~~~d~~~~a~~-y~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 81 (475)
..-+..++|++..+.| +-++=| ..+.+.|+++|---+..++|++..
T Consensus 40 ~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~ 96 (177)
T PRK14156 40 NERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAV 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhC
Confidence 5667788888888887 333221 123344455555555555555543
No 80
>PF14075 UBN_AB: Ubinuclein conserved middle domain
Probab=22.40 E-value=1.8e+02 Score=28.38 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=54.8
Q ss_pred cccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHhhccCCccccchhhhccHHH
Q 011913 87 DLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQK--NQATYLVQLASRTTPKGLHCLSMQLTAEY 164 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~--~~~~~~~~la~~~~Pk~~hcl~~rl~~e~ 164 (475)
.||..+...|..+.++.+.. +..-=++-+...+..+|..+|.+++..- ..++++.||++ -+|=+..-|.-|+..-+
T Consensus 4 ~Lp~~l~~~I~~l~~~a~~~-~~~gK~kff~~~vn~lLL~ie~~~~~~~~~~R~~vy~hL~~-~lPc~K~tL~kr~KkL~ 81 (214)
T PF14075_consen 4 GLPADLEERINDLKEAAKSS-DGEGKKKFFTSEVNPLLLDIELQCRELNPSVRSAVYSHLES-FLPCNKDTLLKRAKKLR 81 (214)
T ss_pred CCCHHHHHHHHHHHHHHHhc-CcCcccccCCHHHHHHHHHHHHHHHHcCchhhHHHHHHHHH-HCCCCHHHHHHHHHHHH
Confidence 57777777777776654422 3333344467888999999999998764 78999999999 56877777766665543
Q ss_pred H
Q 011913 165 F 165 (475)
Q Consensus 165 ~ 165 (475)
+
T Consensus 82 ~ 82 (214)
T PF14075_consen 82 L 82 (214)
T ss_pred H
Confidence 3
No 81
>PRK12302 bssR biofilm formation regulatory protein BssR; Reviewed
Probab=21.38 E-value=5.6e+02 Score=22.41 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHHHHHHHHhh----cccCChHHH----HHHHHHHHHH
Q 011913 88 LSRRAFRRMNQMEATLDKAS----HVYPDCSAM----ATKLRAMTYN 126 (475)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~kl~~~~~~ 126 (475)
+.++-...++.-+..++.|- +-+.||.++ +.||..-+..
T Consensus 64 ~d~eE~~aL~~A~~aLa~AaVCLMsGhHDCPtfiaVna~KLencLtt 110 (127)
T PRK12302 64 LDQEEWSALRHAEEALATAAVCLMSGHHDCPTFIAVNADKLENCLTT 110 (127)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeecHHHHHHHHHH
Confidence 44444455666677777765 557899998 5566554443
No 82
>PHA01346 hypothetical protein
Probab=20.78 E-value=3.4e+02 Score=19.81 Aligned_cols=43 Identities=33% Similarity=0.463 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHH
Q 011913 61 NSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDK 105 (475)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (475)
|.-++.||+.-|-|+.|.--.+.+|.|.+++ +.-.+++.++.+
T Consensus 5 ntllmqelrllicelkrlrlsavsdpdfsqe--kihaeldsllrk 47 (53)
T PHA01346 5 NTLLMQELRLLICELKRLRLSAVSDPDFSQE--KIHAELDSLLRK 47 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCccHH--HHHHHHHHHHHH
Confidence 5668999999999999976667777766542 233344555544
No 83
>PLN02867 Probable galacturonosyltransferase
Probab=20.73 E-value=3e+02 Score=30.66 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHHHHHhccccCCC--cccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHh
Q 011913 61 NSHLVKELKLRIKEVERAVGAATKDS--DLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKN 136 (475)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~ 136 (475)
..++++|+.+-+.|... .+..... +.|+++++.+.+|...-..++....-.++|..++...+.+.-.|..+...
T Consensus 91 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~ 166 (535)
T PLN02867 91 SLKLREELTRALVEAKE--QDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWH 166 (535)
T ss_pred hhHHHHHHHHHHHHhhh--ccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999988432 2222333 68999999999999988888888888888988888888877777665443
No 84
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=20.69 E-value=4e+02 Score=27.51 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhccccCCCcccHHH----HHHHHHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHH
Q 011913 64 LVKELKLRIKEVERAVGAATKDSDLSRRA----FRRMNQMEATLDKASHVYPD-CSAMATKLRAMTYNAEERVR 132 (475)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~kl~~~~~~~e~~~~ 132 (475)
=+-||.+|+.|+|.+++ +-.|+.-|-++ .-.|...+.+-.|+.-...+ -..+..+|..|+-.+++=+.
T Consensus 192 kVA~LE~Rlt~lE~vvg-~~~d~~~~lsa~~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaE 264 (371)
T KOG3958|consen 192 KVAELEKRLTELETVVG-CDQDAQNPLSAGLQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAE 264 (371)
T ss_pred HHHHHHHHHHHHHHHHc-CCccccCchhhccCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999998 44444333222 23455566655555433332 34567788888887777664
No 85
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.08 E-value=3.6e+02 Score=25.50 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhccccCCCcccHHH
Q 011913 67 ELKLRIKEVERAVGAATKDSDLSRRA 92 (475)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (475)
-|+.+|+++||+|-. .+||+++
T Consensus 28 ~iK~qiRd~eRlLkk----~~LP~~V 49 (199)
T KOG4484|consen 28 SIKNQIRDLERLLKK----KDLPPEV 49 (199)
T ss_pred HHHHHHHHHHHHHhh----ccCCHHH
Confidence 478899999999975 6788876
Done!