Query 011913
Match_columns 475
No_of_seqs 300 out of 1465
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 1.8E-48 6.1E-53 387.6 19.6 258 185-468 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 1.6E-43 5.3E-48 357.1 19.3 251 186-461 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 100.0 4.5E-28 1.5E-32 246.9 18.7 226 184-462 3-254 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 3.1E-26 1.1E-30 226.1 18.3 223 187-462 7-255 (263)
5 1o7q_A N-acetyllactosaminide a 89.7 15 0.00053 35.9 16.9 197 185-418 49-262 (289)
6 3ioh_A Histo-blood group ABO s 79.0 52 0.0018 32.3 15.2 203 184-418 58-271 (298)
7 2dl1_A Spartin; SPG20, MIT, st 76.8 5.6 0.00019 33.9 6.5 82 35-133 8-93 (116)
8 3v1a_A Computational design, M 73.4 4.4 0.00015 29.1 4.2 38 42-79 6-43 (48)
9 1fo8_A Alpha-1,3-mannosyl-glyc 66.4 39 0.0013 33.8 11.1 113 186-311 4-121 (343)
10 1yzm_A FYVE-finger-containing 64.3 6.4 0.00022 28.6 3.5 38 42-79 7-44 (51)
11 1z0k_B FYVE-finger-containing 58.7 9.2 0.00031 29.6 3.7 39 42-80 25-63 (69)
12 1z0j_B FYVE-finger-containing 58.2 9.8 0.00034 28.5 3.6 40 41-80 13-52 (59)
13 4ayl_A BOGT-metal-independent 50.7 1.7E+02 0.0059 27.8 15.7 201 186-418 3-216 (246)
14 4e61_A Protein BIM1; EB1-like 43.1 30 0.001 28.9 4.7 60 67-129 22-101 (106)
15 2p6w_A VP54, putative glycosyl 32.5 1E+02 0.0035 28.5 6.9 18 286-303 69-86 (213)
16 3t98_B Nucleoporin NUP58/NUP45 31.4 1.7E+02 0.0058 23.6 7.4 38 65-102 21-59 (93)
17 1xhb_A Polypeptide N-acetylgal 26.9 2.1E+02 0.0071 28.8 9.1 101 185-311 30-137 (472)
18 3ghg_C Fibrinogen gamma chain; 26.8 1.9E+02 0.0064 29.7 8.5 69 66-137 34-106 (411)
19 3dfz_A SIRC, precorrin-2 dehyd 26.4 1.7E+02 0.0059 27.1 7.6 75 57-146 146-221 (223)
20 4hg6_A Cellulose synthase subu 24.4 3.6E+02 0.012 29.6 11.0 45 184-228 140-186 (802)
21 1qg8_A Protein (spore coat pol 23.5 3.9E+02 0.013 23.7 12.0 107 186-311 3-111 (255)
22 3gn4_A Myosin-VI; unconvention 22.8 1.8E+02 0.006 25.6 6.4 70 65-134 74-144 (148)
23 1m1j_C Fibrinogen gamma chain; 21.4 2.7E+02 0.0092 28.4 8.5 46 89-134 79-124 (409)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=1.8e-48 Score=387.63 Aligned_cols=258 Identities=12% Similarity=0.131 Sum_probs=194.6
Q ss_pred ceeEEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhh
Q 011913 185 LHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 262 (475)
Q Consensus 185 ~ihIv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl 262 (475)
.||||+++|+.| +++|+|+|++.|+++ +.++|||++++++.+.++.+..+....+++|+++.+++ +++.
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~~------- 75 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLFS------- 75 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHHh-------
Confidence 489999999986 599999999999985 57999999999999887776665444678899998874 1111
Q ss_pred hccCCCCCCccchhhhHHhhhhccccC-CCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCC
Q 011913 263 KKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF 341 (475)
Q Consensus 263 ~~~~~~~~~~~S~~~y~Rf~iPellP~-ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~ 341 (475)
.. ....++|..+|+||++|+++|+ ++||||||+|+||++||++||++|++|+++|||+||.... +.+....+
T Consensus 76 -~~--~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~--~~~~~~~~-- 148 (276)
T 3tzt_A 76 -FA--KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTD--MANNVNRI-- 148 (276)
T ss_dssp -----------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC-----------------
T ss_pred -cC--ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccch--HHHHHHHh--
Confidence 11 1235789999999999999995 9999999999999999999999999999999999997531 11111111
Q ss_pred CChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEecc-cccccccC
Q 011913 342 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDK-RWHVLGLG 420 (475)
Q Consensus 342 s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~Ld~-~WN~~~lg 420 (475)
.++...+|||||||||||++||+.++++++++|++++... ...+||+++|++|.++++.||+ +||+++ |
T Consensus 149 -------~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~--~~~~DQd~LN~~f~~~~~~Lp~~~wN~~~-~ 218 (276)
T 3tzt_A 149 -------RLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMN--LLLPDQDILNAMYGDRIYPLDDLIYNYDA-R 218 (276)
T ss_dssp --------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHGGGEEEEEHHHHSEET-T
T ss_pred -------cCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccc--ccCCChhHHHHHHhCCEEECCchheeeec-c
Confidence 2334459999999999999999999999999999887643 2357899999999999999999 999996 3
Q ss_pred CCCC--------Cc-hhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCccc
Q 011913 421 YDSG--------VA-RRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFL 468 (475)
Q Consensus 421 y~~~--------~~-~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl 468 (475)
+... .. ....++|+||||+|+.|||...+.++|+++||+|+++..++|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 219 NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 3210 01 234678999999999999999999999999999999888776
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=1.6e-43 Score=357.07 Aligned_cols=251 Identities=18% Similarity=0.219 Sum_probs=198.6
Q ss_pred eeEEEEcCcch--hHHHHHHHH-HhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhh
Q 011913 186 HHYAVFSDNVL--ACAVVVNST-VSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 262 (475)
Q Consensus 186 ihIv~~sDn~l--a~~V~I~Sl-v~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl 262 (475)
||||+++|+.+ +++|+++|+ +.|+. .+++|||++++++.+..+.+..+....+..|+++.++.- .+
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~-----~~---- 69 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPE-----DF---- 69 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGG-----GG----
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHH-----HH----
Confidence 69999999976 599999999 88875 469999999999998877776654445678888887631 11
Q ss_pred hccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCC
Q 011913 263 KKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFS 342 (475)
Q Consensus 263 ~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s 342 (475)
++.. ....++|..+|+||++|++||+++||||||+|+||++||++||++|++|+++|||+||... ....+...++
T Consensus 70 ~~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~--~~~~~~~~~~-- 144 (311)
T 1g9r_A 70 AGFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE--RQEGYKQKIG-- 144 (311)
T ss_dssp TTSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHH--TSTTHHHHTT--
T ss_pred hcCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchh--hhHHHHHhcC--
Confidence 1111 1246789999999999999999999999999999999999999999999999999998641 0112223333
Q ss_pred ChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEecccccccccCCC
Q 011913 343 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYD 422 (475)
Q Consensus 343 ~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~lgy~ 422 (475)
+.+..+||||||||||+++||+.++++++++|++++... ...+||+++|.+|.+++..||.+||++..++.
T Consensus 145 -------~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~lN~~f~~~~~~Lp~~wN~~~~~~~ 215 (311)
T 1g9r_A 145 -------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDV--MQYQDQDILNGLFKGGVCYANSRFNFMPTNYA 215 (311)
T ss_dssp -------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTT--CSSHHHHHHHHHHTTSEEEECGGGSBCHHHHH
T ss_pred -------CCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCc--CccCCcCHHHHHHcCCEEEcChhhccCcchhh
Confidence 234578999999999999999999999999999987654 33578999999999999999999999853211
Q ss_pred ------CCC---c-----hhhccCCeEEEccCCCCCcccCCccccHHHHHHHh
Q 011913 423 ------SGV---A-----RRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFI 461 (475)
Q Consensus 423 ------~~~---~-----~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~ 461 (475)
.+. . ....++++||||+|+.|||...+.+++.++|..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~ 268 (311)
T 1g9r_A 216 FMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268 (311)
T ss_dssp TCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHH
T ss_pred HHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHH
Confidence 000 0 11235789999999999999998888887776665
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.96 E-value=4.5e-28 Score=246.93 Aligned_cols=226 Identities=13% Similarity=0.143 Sum_probs=160.3
Q ss_pred CceeEEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhh
Q 011913 184 DLHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNAT 261 (475)
Q Consensus 184 ~~ihIv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pv 261 (475)
+...|++++|+.| ++.|++.|+..|+++ ..++| +++++++.+..+.+.... . .++.++.... .+..-
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~--~v~~v~~l~~---~~~~~ 71 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----D--EVITVDILDS---GDSAH 71 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----S--EEEECCTTST---TSTTH
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----C--EEEEEeecCC---cchhh
Confidence 4578889999876 588999999999865 35666 678889988777766542 2 3444442211 11000
Q ss_pred hhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCC
Q 011913 262 LKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF 341 (475)
Q Consensus 262 l~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~ 341 (475)
+..+ ....+..+|+||++|++ ++++||||||+|+||.+||++||+++ .+|||+|.+.
T Consensus 72 ~~~~----~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~~~-------------- 128 (333)
T 1ll2_A 72 LTLM----KRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPGW-------------- 128 (333)
T ss_dssp HHHH----HCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSEEEECSSS--------------
T ss_pred cccc----cccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----ceeEEecCCC--------------
Confidence 0000 01123589999999995 78999999999999999999999986 4788876421
Q ss_pred CChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccce-----eEecccccc
Q 011913 342 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHT-----MALDKRWHV 416 (475)
Q Consensus 342 s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i-----~~Ld~~WN~ 416 (475)
.+||||||||||++. .+.+++++++.++.. +..+||+++|.+|.+.+ ..||.+||+
T Consensus 129 ------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~~---~~~~DQ~~LN~~f~~~~~~~~~~~Lp~~yN~ 189 (333)
T 1ll2_A 129 ------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQGS---FDGGDQGLLNTFFNSWATTDIRKHLPFIYNL 189 (333)
T ss_dssp ------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTCC---TTSSHHHHHHHHTTTTTTSCGGGBCCGGGSE
T ss_pred ------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcCC---CCCCCHHHHHHHHHhhcccCccccCCcHHhc
Confidence 259999999999863 445667777776532 45689999999998643 799999999
Q ss_pred cccC-CCCCCc-hhhccCCeEEEccCCCCCcccCCcc-----------------ccHHHHHHHhc
Q 011913 417 LGLG-YDSGVA-RRDIEQAAVIHYDGVMKPWLEIGIA-----------------KYKGYWTKFIN 462 (475)
Q Consensus 417 ~~lg-y~~~~~-~~~~~~a~IIHy~G~~KPW~~~~~~-----------------~y~~lW~~Y~~ 462 (475)
+... |..... ....++++||||+|..|||...+.+ .+.+.||.+++
T Consensus 190 ~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~ 254 (333)
T 1ll2_A 190 SSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 254 (333)
T ss_dssp ETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHHHHH
T ss_pred ccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHHHHHHHHH
Confidence 8642 221000 1235789999999999999887432 45788998886
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.94 E-value=3.1e-26 Score=226.10 Aligned_cols=223 Identities=12% Similarity=0.123 Sum_probs=156.7
Q ss_pred eEEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhc
Q 011913 187 HYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 264 (475)
Q Consensus 187 hIv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~ 264 (475)
-+.+++|+.| ++.|++.|+..+++. .++++ +++++++++..+.+.... . +++.++.....++ . -++.
T Consensus 7 yvTl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~~----~--~vi~V~~l~~~~~-~--~~~~ 75 (263)
T 3u2u_A 7 FVTLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETVF----D--EVIMVDVLDSGDS-A--HLTL 75 (263)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHS----S--EEEECCCCCCCCH-H--HHHH
T ss_pred EEEEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHcC----C--eEEEeeecCCcch-h--hhhh
Confidence 3445678775 589999999998864 34443 667889988777765432 2 3444443221110 0 0111
Q ss_pred cCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCCCh
Q 011913 265 ENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDP 344 (475)
Q Consensus 265 ~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s~p 344 (475)
+ .++ .+ ..+|.|++++++. +++||||||+|++|.+||++||+++ .+|||+|.+.
T Consensus 76 ~--~rp-~~-~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~~----------------- 129 (263)
T 3u2u_A 76 M--KRP-EL-GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPGW----------------- 129 (263)
T ss_dssp T--TCT-TG-GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECTTS-----------------
T ss_pred h--cCc-ch-hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEeccCCC-----------------
Confidence 1 122 22 4689999999976 5899999999999999999999987 4788877421
Q ss_pred hhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhcc-----ceeEeccccccccc
Q 011913 345 LIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYK-----HTMALDKRWHVLGL 419 (475)
Q Consensus 345 ~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~-----~i~~Ld~~WN~~~l 419 (475)
..||||||||||++. ++.+++++++.+... ++.+||+++|.+|.+ .++.||.+||++..
T Consensus 130 ---------~~~fNsGv~li~p~~----~~~~~l~~~~~~~~~---~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~ 193 (263)
T 3u2u_A 130 ---------PDCFNSGVFVYQPSV----ETYNQLLHLASEQGS---FDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSI 193 (263)
T ss_dssp ---------TTSEEEEEEEECCCH----HHHHHHHHHHHHHCC---TTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHH
T ss_pred ---------CccccCeEEEEcccH----HHHHHHHHHHHhcCC---CCcccHHHHHHHhccccccCeeEeCCcccccccc
Confidence 248999999999964 567778888876543 456899999999988 78999999999843
Q ss_pred -CCCCCCc-hhhccCCeEEEccCCCCCcccCCc-----------------cccHHHHHHHhc
Q 011913 420 -GYDSGVA-RRDIEQAAVIHYDGVMKPWLEIGI-----------------AKYKGYWTKFIN 462 (475)
Q Consensus 420 -gy~~~~~-~~~~~~a~IIHy~G~~KPW~~~~~-----------------~~y~~lW~~Y~~ 462 (475)
.|..... .+..++++||||+|+.|||...+. ..+-..||..+.
T Consensus 194 ~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~ 255 (263)
T 3u2u_A 194 SIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFT 255 (263)
T ss_dssp HHHSSHHHHHHHGGGCSEEECCSSSCGGGSEEETTTTEEECCSSCGGGSSTHHHHHHHHHHH
T ss_pred hhccccHHHHhhcCCeEEEEECCCCcCCCCCCCCCCCcccccCCCcchhHHHHHHHHHHHHH
Confidence 2321100 123578999999999999998532 246678887653
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=89.75 E-value=15 Score=35.91 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=114.5
Q ss_pred ceeEEEEcCcchh---HHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhh
Q 011913 185 LHHYAVFSDNVLA---CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNAT 261 (475)
Q Consensus 185 ~ihIv~~sDn~la---~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pv 261 (475)
.|-+.+++-..|. .---+.|.=++=-...++++||+||+.+.-. ...-.++.++.+..|.+..
T Consensus 49 tIGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~~p-----~v~l~~~r~~~V~~i~~~~--------- 114 (289)
T 1o7q_A 49 TVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMP-----LIELGPLRSFKVFKIKPEK--------- 114 (289)
T ss_dssp CEEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCC-----CCCCCTTEEEEEEECCCCS---------
T ss_pred eEEEEEEEecccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhhCC-----ccccCCCCeEEEEEecccc---------
Confidence 4555555555442 4456667766654445789999999753110 1112245667777765421
Q ss_pred hhccCCCCCCccchhhhHH------hhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhh
Q 011913 262 LKKENSHDPRYTSALNHLR------FYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRM 335 (475)
Q Consensus 262 l~~~~~~~~~~~S~~~y~R------f~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~ 335 (475)
.|...++.| +-.-+++.++|-+.++|+|+++++++..= .| |..+|...--.- .+-
T Consensus 115 ----------~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y-----~~~ 175 (289)
T 1o7q_A 115 ----------RWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWY-----KAD 175 (289)
T ss_dssp ----------SHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTT-----TSC
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHh-----CCC
Confidence 133333333 33456677899999999999999997541 23 556666543221 110
Q ss_pred hhccCC-CChhhhhc--cCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHH---cCCCCCCCCCCchhhhhhh--ccce
Q 011913 336 DLFINF-SDPLIAKK--FDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---GYKRPLWKAGSLPLGWVTF--YKHT 407 (475)
Q Consensus 336 ~~~Ln~-s~p~i~~~--f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~---~~~~~l~~~~dq~~lN~~f--~~~i 407 (475)
+...-+ .+|.-... ++.+..|+.+|++==-..+.-+ +++.+++-+.. ++=...|. |-.-+|-.| +..+
T Consensus 176 ~~~fpYERrp~S~AyIp~~eGdfYY~Ga~fGGt~~~vl~--l~~~c~~~i~~D~~n~I~A~wH--DESHLNKYf~~~KPt 251 (289)
T 1o7q_A 176 PNDFTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLN--ITQECFKGILKDKKNDIEAQWH--DESHLNKYFLLNKPT 251 (289)
T ss_dssp GGGSCCCCCTTSTTCCCTTCCSCCEEEEEEEECHHHHHH--HHHHHHHHHHHHHHTTCCCTTT--HHHHHHHHHHHSCCS
T ss_pred CCCCCCCCCcCceeeecCCCCCEEEEceeeCCcHHHHHH--HHHHHHHHHHHHHhCCeEEEec--chhhhhHHHhhcCCC
Confidence 111111 12211111 4568899999998776666543 67777776644 33334674 455678764 3457
Q ss_pred eEecccccccc
Q 011913 408 MALDKRWHVLG 418 (475)
Q Consensus 408 ~~Ld~~WN~~~ 418 (475)
+.|++.|++..
T Consensus 252 KvLSPEY~wd~ 262 (289)
T 1o7q_A 252 KILSPEYCWDY 262 (289)
T ss_dssp EEECGGGSBCG
T ss_pred EEECHHHCCCc
Confidence 89999998774
No 6
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=78.97 E-value=52 Score=32.35 Aligned_cols=203 Identities=11% Similarity=0.099 Sum_probs=109.8
Q ss_pred CceeEEEEcCcchh--HHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCC-cccchhhhh
Q 011913 184 DLHHYAVFSDNVLA--CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNF-NWLSTKYNA 260 (475)
Q Consensus 184 ~~ihIv~~sDn~la--~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~-~~l~~~~~p 260 (475)
-.|-+++++-..|. +---+.|.=++=-...++++||+||..+.- -.....++.++.++.+... .|-+.+
T Consensus 58 ~tIGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~v-----P~v~l~~~r~~~V~~v~~~~~Wqd~s--- 129 (298)
T 3ioh_A 58 TTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAAV-----PRVTLGTGRQLSVLEVRAYKRWQDVS--- 129 (298)
T ss_dssp CEEEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGGS-----CCCCCCTTEEEEEEECCCCSSHHHHH---
T ss_pred CcEEEEEEEeCcHHHHHHHHHHhHHHhccCCceEEEEEEeCChhhC-----CccccCCCCeEEEEEeccccCCcccc---
Confidence 34555555555442 555677777776555678999999974311 0112234667777766532 221100
Q ss_pred hhhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccC
Q 011913 261 TLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFIN 340 (475)
Q Consensus 261 vl~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln 340 (475)
+ .-+.++..+-.-.++-++|-++.+|+|+++++++..= .| |..+|...--. |+.-+..+.
T Consensus 130 -m----------~Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~vG~E---~L-g~lva~lHp~~-----y~~~~~~Fp 189 (298)
T 3ioh_A 130 -M----------RRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGVE---IL-TPLFGTLHPGF-----YGSSREAFT 189 (298)
T ss_dssp -H----------HHHHHHHHHHHHTHHHHCSEEEEEESSEEECSCBCGG---GC-SSEEEEBCTTT-----TTSCGGGSC
T ss_pred -H----------HHHHHHHHHHHHHHhhcCCEEEEecCCCeeccCccHH---Hh-HhhHhhcChhh-----hcCCcccCc
Confidence 0 0011222333345677899999999999999986531 12 34555542211 111111111
Q ss_pred C-CChhhhhc--cCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHH---cCCCCCCCCCCchhhhhhhc--cceeEecc
Q 011913 341 F-SDPLIAKK--FDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---GYKRPLWKAGSLPLGWVTFY--KHTMALDK 412 (475)
Q Consensus 341 ~-s~p~i~~~--f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~---~~~~~l~~~~dq~~lN~~f~--~~i~~Ld~ 412 (475)
+ .+|.-... ++.+..|+.+|++==-..+.. ++++.|++-+.. ++=...|. |-.-||-.|- ..++.|++
T Consensus 190 YERrp~S~AyIp~~eGdfYY~ga~fGGt~~~vl--~Lt~~C~~~i~~D~~n~IeA~Wh--DESHLNKYfl~hKPtKvLSP 265 (298)
T 3ioh_A 190 YERRPQSQAYIPKDEGDFYYGGAFFGGSVQEVQ--RLTRACHQAMMVDQANGIEAVWH--DESHLNKYLLRHKPTKVLSP 265 (298)
T ss_dssp CCCCTTSTTCCCTTCCSCCBCTTEEEEEHHHHH--HHHHHHHHHHHHHHHTTCCCTTT--HHHHHHHHHHHSCCSEEECG
T ss_pred ccCCccccccccCCCCCeEEeeeecCCcHHHHH--HHHHHHHHHHHHHHhCCceEecc--chhhhhhhhhhcCCCceeCH
Confidence 1 12211111 345777888887755454443 356666665543 33345674 4456787664 45799999
Q ss_pred cccccc
Q 011913 413 RWHVLG 418 (475)
Q Consensus 413 ~WN~~~ 418 (475)
.|++-.
T Consensus 266 EY~Wd~ 271 (298)
T 3ioh_A 266 EYLWDQ 271 (298)
T ss_dssp GGSBCH
T ss_pred HHcCCc
Confidence 988753
No 7
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.84 E-value=5.6 Score=33.85 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhCCC---CCChHHHHHHHHH-HHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhccc
Q 011913 35 SDEKIKEMKDQVIRAQAYLNFAPP---GSNSHLVKELKLR-IKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVY 110 (475)
Q Consensus 35 ~~~~~~~~~d~~~~a~~y~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (475)
--+.++.+|+.=--|-.|++-|=. .++-+.+.+|.++ |+|+++.|+-.....+-....-+.
T Consensus 8 e~~~l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~--------------- 72 (116)
T 2dl1_A 8 EPAEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWES--------------- 72 (116)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHH---------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH---------------
Confidence 345677888888888888754332 6888899999887 999999998555432222222121
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 011913 111 PDCSAMATKLRAMTYNAEERVRL 133 (475)
Q Consensus 111 ~~~~~~~~kl~~~~~~~e~~~~~ 133 (475)
...|..||+..+.++.+++..
T Consensus 73 --Ar~lq~KM~~nL~~v~~RL~~ 93 (116)
T 2dl1_A 73 --ARQMQQKMKETLQNVRTRLEI 93 (116)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 123445666667777777663
No 8
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=73.45 E-value=4.4 Score=29.13 Aligned_cols=38 Identities=11% Similarity=0.249 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHh
Q 011913 42 MKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAV 79 (475)
Q Consensus 42 ~~d~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (475)
|..|+++.+.|+.-|+..+.-.=+.-|.++++|+++-+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 78999999999988999999988999999999987644
No 9
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=66.36 E-value=39 Score=33.77 Aligned_cols=113 Identities=12% Similarity=0.155 Sum_probs=62.5
Q ss_pred eeEEEEcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhcc
Q 011913 186 HHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKE 265 (475)
Q Consensus 186 ihIv~~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~ 265 (475)
++|++.+=|.-.+.-++.|+.++....+..-+.|..|+...+..+.... +. ..|..+-..+..... +.
T Consensus 4 ~pViI~~yNRp~l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~---~~-~~I~~~~~~d~~~~~--~~------ 71 (343)
T 1fo8_A 4 IPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIAS---YG-SAVTHIRQPDLSNIA--VQ------ 71 (343)
T ss_dssp CCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHT---TG-GGSEEEECSCCCCCC--CC------
T ss_pred ccEEEEECCcHHHHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHH---cC-CceEEEEcCCccccc--cc------
Confidence 4666655554348889999999873323344555556655443332221 11 123222111111000 00
Q ss_pred CCCCC---CccchhhhHHhhhhcccc--CCCeEEEEecCeeeccccHHhhc
Q 011913 266 NSHDP---RYTSALNHLRFYLPDVFP--ALNKVLLFDHDVVVQSDLGRLWN 311 (475)
Q Consensus 266 ~~~~~---~~~S~~~y~Rf~iPellP--~ldKVLYLD~DvIV~~DLseLw~ 311 (475)
..+. .|..++.+++--+-.+|. ..++||+||+|+++-.|.=+.++
T Consensus 72 -~~N~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 72 -PDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp -TTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred -hhhcCcccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 0111 133455667777777777 58999999999999999766554
No 10
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=64.26 E-value=6.4 Score=28.64 Aligned_cols=38 Identities=11% Similarity=0.258 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHh
Q 011913 42 MKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAV 79 (475)
Q Consensus 42 ~~d~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (475)
|..|+++.+.|..-|+..+...=+.=|..+++|+++-+
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 78999999999988999999988888999999987654
No 11
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=58.71 E-value=9.2 Score=29.55 Aligned_cols=39 Identities=10% Similarity=0.252 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHhc
Q 011913 42 MKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVG 80 (475)
Q Consensus 42 ~~d~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (475)
|.+|+++.+.|..-|+..+...=+.=|..+++|+++-+-
T Consensus 25 L~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 789999999999889999999889999999999887543
No 12
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=58.16 E-value=9.8 Score=28.48 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHhc
Q 011913 41 EMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVG 80 (475)
Q Consensus 41 ~~~d~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (475)
-|..|+++.++|..-|+..+...=+.=|..+++|++.-+-
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~ 52 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLA 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 4789999999999889999999888889999999877554
No 13
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=50.67 E-value=1.7e+02 Score=27.84 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=100.7
Q ss_pred eeEEEEcCcchh--HHHHHHHHHhhcCCCCc--EEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhh
Q 011913 186 HHYAVFSDNVLA--CAVVVNSTVSFAKEPEK--IVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNAT 261 (475)
Q Consensus 186 ihIv~~sDn~la--~~V~I~Slv~ns~~p~~--i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pv 261 (475)
|-+++++-..|. +---+.|.=++=-...+ +++||+||....-. ..+.. .+.++.-+.-.|-+.+
T Consensus 3 IGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~~~V~yYVFTD~~~~vp------~~~~~--~v~~~~~~~~~Wqd~s---- 70 (246)
T 4ayl_A 3 IGILYICTGKYDIFWKDFYLSAERYFMQDQSFIIEYYVFTDSPKLYD------EENNK--HIHRIKQKNLGWPDNT---- 70 (246)
T ss_dssp EEEEEECCGGGGGGHHHHHHHHHHHBSCSTTSEEEEEEEESCSCCTT------TTTCT--TEEEEECCCCCTTHHH----
T ss_pred EEEEEEEeCcHHHHHHHHHHhHHHhccCCCccceEEEEEeCChhhCC------cCCCc--eEEEEeCCcCCCcccc----
Confidence 344455444442 55567777777665678 99999999754211 01112 2333322222342211
Q ss_pred hhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCC-CCCEEEEeccCCcchhhHhhhhhccC
Q 011913 262 LKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDM-KGKVIGAVDTCKESEASFRRMDLFIN 340 (475)
Q Consensus 262 l~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL-~g~~iaAV~d~~~~~~~~~r~~~~Ln 340 (475)
+ .-+.++... ...+..++|-+..+|+|+++++++..=-=+.. +|..+|...--.- +.-+..+.
T Consensus 71 m----------~Rm~~i~~~-~~~~~~evDyLf~~dvd~~F~~~vG~E~L~p~~~~~lva~lHp~~y-----~~~~~~fp 134 (246)
T 4ayl_A 71 L----------KRFHIFLRI-KEQLERETDYLFFFNANLLFTSPIGKEILPPSDSNGLLGTMHPGFY-----NKPNSEFT 134 (246)
T ss_dssp H----------THHHHHHTT-HHHHHHHCSEEEEECTTEEECSCBCGGGSCCTTSCCEEEEBCGGGC-------------
T ss_pred h----------HHHHHHHHH-HHHHHhhCCEEEEEeCCceeeccCCHHHcccCCCCCEEEEechhhh-----CCCcccCc
Confidence 1 011223333 55556569999999999999999864110122 2445555432111 10000000
Q ss_pred C-CChhhhhc--cCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHH---cCCCCCCCCCCchhhhhhhc-cc-eeEecc
Q 011913 341 F-SDPLIAKK--FDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---GYKRPLWKAGSLPLGWVTFY-KH-TMALDK 412 (475)
Q Consensus 341 ~-s~p~i~~~--f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~---~~~~~l~~~~dq~~lN~~f~-~~-i~~Ld~ 412 (475)
+ .+|.-... ++.+..|+.+|++==-..+.. ++++.+++-+.. ++=...|. |-.-||-.|- ++ .+.|++
T Consensus 135 YERrp~S~AyIp~~eGdfYY~ga~fGG~~~~vl--~Lt~~c~~~i~~D~~n~I~A~wh--DESHLNKYfl~~KP~~vLSP 210 (246)
T 4ayl_A 135 YERRDASTAYIPEGEGRYYYAGGLSGGCTKAYL--KLCTTICSWVDRDATNHIIPIWH--DESLINKYFLDNPPAITLSP 210 (246)
T ss_dssp ----------------CCCBCSSEEEEEHHHHH--HHHHHHHHHHHHHHTTCSSCSCC--HHHHHHHHHHHSCCSEEECG
T ss_pred ccCCccccccccCCCCCeEEeeeecCCcHHHHH--HHHHHHHHHHHHHHhCCceEecc--chhHhHHHHHhCCCCeeeCH
Confidence 0 11211111 345677888887755555544 367777776654 33335674 4456787654 33 456999
Q ss_pred cccccc
Q 011913 413 RWHVLG 418 (475)
Q Consensus 413 ~WN~~~ 418 (475)
.|++-.
T Consensus 211 EY~wd~ 216 (246)
T 4ayl_A 211 AYLYPE 216 (246)
T ss_dssp GGGEET
T ss_pred HHcCCc
Confidence 998763
No 14
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=43.12 E-value=30 Score=28.87 Aligned_cols=60 Identities=13% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhccc--------------------CChHHHHHHHHHHHHH
Q 011913 67 ELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVY--------------------PDCSAMATKLRAMTYN 126 (475)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~kl~~~~~~ 126 (475)
+|.+++.++...+....... .+--.|++..|.++-.+.+.. -+-..+.+|+.++|++
T Consensus 22 ~L~~ei~eLk~~ve~lEkER---DFYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYa 98 (106)
T 4e61_A 22 SLNEEIEQYKGTVSTLEIER---EFYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYA 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhc
Confidence 45555555544444332211 134788888888888776531 1234678999999999
Q ss_pred HHH
Q 011913 127 AEE 129 (475)
Q Consensus 127 ~e~ 129 (475)
|||
T Consensus 99 Tee 101 (106)
T 4e61_A 99 TAE 101 (106)
T ss_dssp HHH
T ss_pred ccc
Confidence 997
No 15
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=32.54 E-value=1e+02 Score=28.53 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=16.8
Q ss_pred cccCCCeEEEEecCeeec
Q 011913 286 VFPALNKVLLFDHDVVVQ 303 (475)
Q Consensus 286 llP~ldKVLYLD~DvIV~ 303 (475)
-+|+.+-+-|||+|++|.
T Consensus 69 khPeAEWfWWLDsDAlIM 86 (213)
T 2p6w_A 69 KFPSTEWFLWLDSDVYVN 86 (213)
T ss_dssp HCTTCSEEEEECTTEEEC
T ss_pred HCCCceEEEEecCCceee
Confidence 389999999999999998
No 16
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=31.42 E-value=1.7e+02 Score=23.64 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhccccCCCcc-cHHHHHHHHHHHHH
Q 011913 65 VKELKLRIKEVERAVGAATKDSDL-SRRAFRRMNQMEAT 102 (475)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 102 (475)
+...+++|.|+|+.|.-.+..+.+ |.++-.-|+.+-++
T Consensus 21 L~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~ 59 (93)
T 3t98_B 21 LQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQT 59 (93)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence 345678899999988765544444 44556666666543
No 17
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=26.95 E-value=2.1e+02 Score=28.77 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=55.0
Q ss_pred ceeEEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHH----HHHHHHhhCCCCCceEEEEEecCCcccchhh
Q 011913 185 LHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLP----AISMWFLLNPPGKATIQIQSIDNFNWLSTKY 258 (475)
Q Consensus 185 ~ihIv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~----~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~ 258 (475)
.+-|++.+=|.- .+.-+|.|++..+..+..+.+.||.|+-+.. .++.+.. ..+ ..+.++..+.-
T Consensus 30 ~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~--~~~-~~v~vi~~~~n------- 99 (472)
T 1xhb_A 30 TTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK--KLK-VPVHVIRMEQR------- 99 (472)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH--SSS-SCEEEEECSSC-------
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHH--HCC-CcEEEEECCCC-------
Confidence 477777666543 4777899999877532235777777765542 2333322 111 23555544320
Q ss_pred hhhhhccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccc-cHHhhc
Q 011913 259 NATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWN 311 (475)
Q Consensus 259 ~pvl~~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~ 311 (475)
.. ...+|-.--+.- .-+-|++||+|+++..+ |..|.+
T Consensus 100 -----------~G----~~~a~N~g~~~A-~gd~i~flD~D~~~~p~~L~~ll~ 137 (472)
T 1xhb_A 100 -----------SG----LIRARLKGAAVS-RGQVITFLDAHCECTAGWLEPLLA 137 (472)
T ss_dssp -----------CC----HHHHHHHHHHHC-CSSEEEEEESSEEECTTCHHHHHH
T ss_pred -----------CC----hHHHHHHHHHhc-cCCeEEEECCCeEeCccHHHHHHH
Confidence 00 111222211111 25889999999999755 555554
No 18
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.85 E-value=1.9e+02 Score=29.69 Aligned_cols=69 Identities=7% Similarity=0.125 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChHHH-H---HHHHHHHHHHHHHHHHHHhh
Q 011913 66 KELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAM-A---TKLRAMTYNAEERVRLQKNQ 137 (475)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~kl~~~~~~~e~~~~~~~~~ 137 (475)
+..+..|+|+|..|.+++. ...++.+.|+.|.....+++....|-.++ . +||..-+..+|..+..+..+
T Consensus 34 ~~V~~~l~~L~~~l~~isn---~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~ 106 (411)
T 3ghg_C 34 TKVDKDLQSLEDILHQVEN---KTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSS 106 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455667777777776542 34577888999998888888777774333 2 22333333344444443333
No 19
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=26.41 E-value=1.7e+02 Score=27.15 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=49.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHH-HHH
Q 011913 57 PPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVR-LQK 135 (475)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~-~~~ 135 (475)
-.+....|++.||++|.++ ||++..+.++.|..+=.+.|....|-..=-.-++.+ .++... ..+
T Consensus 146 T~G~sP~la~~iR~~ie~~------------lp~~~~~~~~~~~~~R~~vk~~~~~~~~Rr~~~~~~---~~~~~~~~~~ 210 (223)
T 3dfz_A 146 TDGASPLLTKRIKEDLSSN------------YDESYTQYTQFLYECRVLIHRLNVSKSRKHELLTEI---IDDQYRLSLV 210 (223)
T ss_dssp CTTSCHHHHHHHHHHHHHH------------SCTHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHT---CSHHHHHCHH
T ss_pred CCCCCcHHHHHHHHHHHHH------------ccHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---hcchhhcChH
Confidence 3356789999999888765 567777777777777777777777754332223332 333333 667
Q ss_pred hhHHHHHHHhh
Q 011913 136 NQATYLVQLAS 146 (475)
Q Consensus 136 ~~~~~~~~la~ 146 (475)
+|..|+..|..
T Consensus 211 ~~~~~~~~l~~ 221 (223)
T 3dfz_A 211 KQREFLQQIEK 221 (223)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 88889887754
No 20
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=24.37 E-value=3.6e+02 Score=29.61 Aligned_cols=45 Identities=11% Similarity=-0.079 Sum_probs=31.1
Q ss_pred CceeEEEEcCcch-h-HHHHHHHHHhhcCCCCcEEEEEecCCCCHHH
Q 011913 184 DLHHYAVFSDNVL-A-CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPA 228 (475)
Q Consensus 184 ~~ihIv~~sDn~l-a-~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~ 228 (475)
..+-|++.+=|.- . +.-+|.|+....-.++++.+.|+.|+.++..
T Consensus 140 P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T 186 (802)
T 4hg6_A 140 PTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQR 186 (802)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHH
T ss_pred CcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccc
Confidence 3577788765543 3 4778999987654445689999999865543
No 21
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=23.53 E-value=3.9e+02 Score=23.66 Aligned_cols=107 Identities=12% Similarity=-0.001 Sum_probs=57.9
Q ss_pred eeEEEEcCcc-hhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhc
Q 011913 186 HHYAVFSDNV-LACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK 264 (475)
Q Consensus 186 ihIv~~sDn~-la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~ 264 (475)
+-|++.+=|. -.+.-+|.|++..+.. .+.+.|+.|+-+....+....... ...|.++..+.-.. . +.
T Consensus 3 vSViIp~yn~~~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~~~~--~~~i~~i~~~~~~~----~-~~--- 70 (255)
T 1qg8_A 3 VSVIMTSYNKSDYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRPFLN--DNRVRFYQSDISGV----K-ER--- 70 (255)
T ss_dssp EEEEEEESSCTTTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGGGGG--STTEEEEECCCCSH----H-HH---
T ss_pred EEEEEEcCCCHHHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHHHhh--cCCEEEEecccccc----c-cc---
Confidence 5677766554 3477789999876643 588888888877765544333322 23455554431000 0 00
Q ss_pred cCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccc-cHHhhc
Q 011913 265 ENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWN 311 (475)
Q Consensus 265 ~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~D-LseLw~ 311 (475)
++... ....|-..-+.- .-+-|++||+|.++..| |..+.+
T Consensus 71 -----~~n~G-~~~a~N~gi~~a-~g~~i~~lD~Dd~~~~~~l~~~~~ 111 (255)
T 1qg8_A 71 -----TEKTR-YAALINQAIEMA-EGEYITYATDDNIYMPDRLLKMVR 111 (255)
T ss_dssp -----HSSCH-HHHHHHHHHHHC-CCSEEEEEETTEEECTTHHHHHHH
T ss_pred -----ccccC-HHHHHHHHHHHc-CCCEEEEeCCCCccChHHHHHHHH
Confidence 00011 112222221222 45889999999999765 444543
No 22
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=22.81 E-value=1.8e+02 Score=25.63 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhccccCCCc-ccHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Q 011913 65 VKELKLRIKEVERAVGAATKDSD-LSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQ 134 (475)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~ 134 (475)
++-|+.++.+++.+++....|.+ ....+...-.+.+.++.+.|.-..+-..+...-.+++..+|+.+.+.
T Consensus 74 v~~L~~~~~~~~~i~~~Lk~~k~k~~~~v~~~~~~i~~~i~kIK~~~i~~~~Id~~y~~lv~~~~~~l~~l 144 (148)
T 3gn4_A 74 VGTLKKRLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAKIKSTMMTREQIQKEYDALVKSSAVLLSAL 144 (148)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577778888888888875442 33455666777788888888777777777778888888887777643
No 23
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.36 E-value=2.7e+02 Score=28.43 Aligned_cols=46 Identities=4% Similarity=0.043 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Q 011913 89 SRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQ 134 (475)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~ 134 (475)
...+.++.++|..-+.+-......-.+-+..|+.++...+.++...
T Consensus 79 ~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 79 IEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 3455677777777666654433333444555666665555555543
Done!