Query 011914
Match_columns 475
No_of_seqs 390 out of 2943
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 6.9E-92 1.5E-96 711.6 33.7 410 9-423 2-413 (413)
2 KOG0651 26S proteasome regulat 100.0 5.2E-59 1.1E-63 457.5 9.3 376 1-419 1-387 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 1.3E-42 2.8E-47 348.1 18.3 189 155-360 181-375 (406)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 8E-41 1.7E-45 351.3 18.7 236 153-418 539-789 (802)
5 KOG0730 AAA+-type ATPase [Post 100.0 2E-39 4.3E-44 344.8 18.7 190 154-363 463-658 (693)
6 KOG0736 Peroxisome assembly fa 100.0 3.9E-38 8.4E-43 337.9 19.9 239 155-417 701-951 (953)
7 KOG0738 AAA+-type ATPase [Post 100.0 4.5E-38 9.9E-43 317.2 18.5 241 155-417 240-488 (491)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 3.9E-38 8.4E-43 331.2 17.5 196 153-364 217-418 (802)
9 KOG0734 AAA+-type ATPase conta 100.0 1.4E-35 3E-40 308.0 13.6 182 155-356 333-520 (752)
10 KOG0735 AAA+-type ATPase [Post 100.0 6.6E-34 1.4E-38 303.1 16.0 194 155-368 697-896 (952)
11 KOG0727 26S proteasome regulat 100.0 1.1E-33 2.3E-38 272.4 13.6 189 155-360 185-379 (408)
12 KOG0728 26S proteasome regulat 100.0 8.7E-32 1.9E-36 259.0 16.2 190 154-360 176-371 (404)
13 COG0464 SpoVK ATPases of the A 100.0 1.2E-31 2.5E-36 288.0 19.1 188 155-362 272-467 (494)
14 KOG0739 AAA+-type ATPase [Post 100.0 5.8E-32 1.3E-36 265.4 14.8 242 156-418 163-436 (439)
15 KOG0731 AAA+-type ATPase conta 100.0 2.3E-32 5E-37 298.2 13.3 196 153-364 338-540 (774)
16 KOG0726 26S proteasome regulat 100.0 3.5E-32 7.5E-37 266.2 12.6 193 155-364 215-413 (440)
17 TIGR01243 CDC48 AAA family ATP 100.0 2.1E-31 4.5E-36 298.5 20.4 238 154-417 482-729 (733)
18 KOG0741 AAA+-type ATPase [Post 100.0 3.2E-32 6.9E-37 282.8 11.2 196 154-364 251-462 (744)
19 CHL00195 ycf46 Ycf46; Provisio 100.0 5E-31 1.1E-35 281.4 18.8 180 154-354 254-441 (489)
20 KOG0737 AAA+-type ATPase [Post 100.0 6.1E-31 1.3E-35 265.2 16.5 226 156-401 124-359 (386)
21 KOG0652 26S proteasome regulat 100.0 2.3E-31 5E-36 257.3 12.1 191 153-360 199-395 (424)
22 COG0465 HflB ATP-dependent Zn 100.0 1.2E-30 2.5E-35 280.5 18.3 232 155-403 179-420 (596)
23 KOG0729 26S proteasome regulat 100.0 3E-31 6.4E-36 257.2 12.3 189 154-359 206-400 (435)
24 TIGR03689 pup_AAA proteasome A 100.0 1.3E-30 2.9E-35 278.3 18.0 239 153-421 210-498 (512)
25 COG1223 Predicted ATPase (AAA+ 100.0 2.6E-30 5.7E-35 249.9 14.4 196 145-364 134-338 (368)
26 PTZ00454 26S protease regulato 100.0 1.3E-29 2.8E-34 264.9 15.6 191 153-360 173-369 (398)
27 PRK03992 proteasome-activating 100.0 3.5E-29 7.6E-34 261.5 16.2 191 153-360 159-355 (389)
28 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.9E-29 6.3E-34 290.1 15.2 183 155-360 1626-1860(2281)
29 KOG0740 AAA+-type ATPase [Post 100.0 5.1E-29 1.1E-33 258.6 13.2 233 157-417 184-423 (428)
30 TIGR01241 FtsH_fam ATP-depende 100.0 1.3E-28 2.8E-33 264.7 14.4 186 154-358 83-276 (495)
31 PTZ00361 26 proteosome regulat 100.0 1.7E-28 3.7E-33 258.6 14.7 190 154-360 212-407 (438)
32 KOG0730 AAA+-type ATPase [Post 100.0 5E-28 1.1E-32 258.0 15.9 238 154-420 213-463 (693)
33 CHL00176 ftsH cell division pr 99.9 1.9E-27 4E-32 261.2 15.1 186 155-357 212-403 (638)
34 TIGR01242 26Sp45 26S proteasom 99.9 6.2E-27 1.3E-31 242.4 15.1 190 154-360 151-346 (364)
35 PRK10733 hflB ATP-dependent me 99.9 3E-26 6.6E-31 253.1 16.8 187 155-360 181-375 (644)
36 KOG0732 AAA+-type ATPase conta 99.9 3.4E-25 7.3E-30 247.8 14.1 187 154-360 294-492 (1080)
37 TIGR01243 CDC48 AAA family ATP 99.9 1.5E-23 3.2E-28 235.3 17.8 191 153-363 206-402 (733)
38 PF00004 AAA: ATPase family as 99.9 1.2E-22 2.6E-27 177.7 12.8 130 162-308 1-131 (132)
39 KOG0743 AAA+-type ATPase [Post 99.8 1.3E-19 2.9E-24 187.7 17.6 166 152-338 228-402 (457)
40 KOG0744 AAA+-type ATPase [Post 99.8 5.4E-20 1.2E-24 183.1 8.0 153 156-322 174-341 (423)
41 TIGR02881 spore_V_K stage V sp 99.7 4.5E-16 9.7E-21 154.3 17.3 150 158-334 41-206 (261)
42 CHL00181 cbbX CbbX; Provisiona 99.7 3E-16 6.5E-21 158.0 16.1 151 158-334 58-224 (287)
43 KOG2004 Mitochondrial ATP-depe 99.7 5.4E-16 1.2E-20 167.2 17.8 155 153-323 432-598 (906)
44 TIGR00763 lon ATP-dependent pr 99.7 5.7E-16 1.2E-20 175.1 18.9 164 160-339 348-535 (775)
45 COG0466 Lon ATP-dependent Lon 99.7 6.7E-16 1.5E-20 167.1 17.9 164 160-339 351-538 (782)
46 KOG0742 AAA+-type ATPase [Post 99.7 1.9E-16 4.2E-21 161.7 12.0 172 129-322 354-529 (630)
47 KOG0735 AAA+-type ATPase [Post 99.7 6.9E-16 1.5E-20 166.1 15.9 191 156-363 428-630 (952)
48 TIGR02880 cbbX_cfxQ probable R 99.7 1.6E-15 3.4E-20 152.5 17.3 151 158-334 57-223 (284)
49 KOG0736 Peroxisome assembly fa 99.6 8.9E-15 1.9E-19 158.9 17.2 178 156-353 428-609 (953)
50 TIGR02639 ClpA ATP-dependent C 99.6 7.7E-15 1.7E-19 165.0 12.9 159 158-341 202-387 (731)
51 PF05496 RuvB_N: Holliday junc 99.6 6E-14 1.3E-18 135.5 15.1 154 157-337 48-210 (233)
52 PRK10787 DNA-binding ATP-depen 99.6 1.2E-13 2.6E-18 155.8 19.4 163 160-339 350-536 (784)
53 COG2256 MGS1 ATPase related to 99.6 1.8E-13 3.9E-18 140.5 18.4 126 158-320 47-175 (436)
54 COG0464 SpoVK ATPases of the A 99.5 1.5E-13 3.3E-18 148.0 15.4 185 155-361 14-204 (494)
55 PRK11034 clpA ATP-dependent Cl 99.5 5.9E-14 1.3E-18 157.4 12.4 139 159-322 207-363 (758)
56 TIGR03345 VI_ClpV1 type VI sec 99.5 2.6E-13 5.7E-18 154.5 14.0 158 159-341 208-392 (852)
57 PRK10865 protein disaggregatio 99.5 2.2E-13 4.8E-18 155.4 12.1 139 159-322 199-355 (857)
58 PRK00080 ruvB Holliday junctio 99.5 8.6E-13 1.9E-17 135.0 14.3 158 157-341 49-215 (328)
59 TIGR03346 chaperone_ClpB ATP-d 99.4 1E-12 2.3E-17 150.1 15.8 159 158-341 193-378 (852)
60 CHL00095 clpC Clp protease ATP 99.4 4.7E-13 1E-17 152.4 12.7 159 157-341 198-383 (821)
61 PRK07003 DNA polymerase III su 99.4 1.8E-12 3.8E-17 143.3 15.6 159 146-340 27-212 (830)
62 TIGR00390 hslU ATP-dependent p 99.4 2.1E-12 4.5E-17 135.0 15.1 156 157-318 45-343 (441)
63 PRK14956 DNA polymerase III su 99.4 3E-12 6.6E-17 136.2 16.5 145 157-335 38-209 (484)
64 PRK04195 replication factor C 99.4 1.5E-12 3.1E-17 140.2 14.2 151 157-339 37-193 (482)
65 PRK05201 hslU ATP-dependent pr 99.4 2.9E-12 6.4E-17 134.0 15.7 155 158-318 49-345 (443)
66 PHA02544 44 clamp loader, smal 99.4 3.6E-12 7.9E-17 129.1 15.7 150 157-340 41-201 (316)
67 PRK05342 clpX ATP-dependent pr 99.4 3.9E-12 8.5E-17 134.1 15.6 102 159-260 108-212 (412)
68 PRK12323 DNA polymerase III su 99.4 3.8E-12 8.3E-17 139.0 15.3 156 146-337 27-214 (700)
69 PRK13342 recombination factor 99.4 1.5E-11 3.3E-16 129.8 19.4 147 159-343 36-190 (413)
70 PRK12422 chromosomal replicati 99.4 7.3E-12 1.6E-16 133.4 16.7 164 159-352 141-317 (445)
71 PRK11034 clpA ATP-dependent Cl 99.4 7.8E-12 1.7E-16 140.5 17.5 146 157-322 485-667 (758)
72 TIGR00635 ruvB Holliday juncti 99.4 2.4E-12 5.1E-17 129.8 12.1 157 157-340 28-193 (305)
73 PRK14962 DNA polymerase III su 99.4 1.4E-11 3.1E-16 132.0 18.0 149 157-339 34-209 (472)
74 TIGR02640 gas_vesic_GvpN gas v 99.4 7.9E-12 1.7E-16 124.3 14.3 146 160-321 22-198 (262)
75 PRK00149 dnaA chromosomal repl 99.4 3.1E-12 6.7E-17 136.5 12.0 177 143-350 133-324 (450)
76 TIGR00382 clpX endopeptidase C 99.4 1.2E-11 2.7E-16 130.0 16.1 128 159-287 116-247 (413)
77 TIGR02639 ClpA ATP-dependent C 99.4 2.4E-11 5.2E-16 137.0 19.4 142 157-322 481-663 (731)
78 COG2255 RuvB Holliday junction 99.4 1.4E-11 3.1E-16 121.8 14.9 151 157-337 50-212 (332)
79 PRK14949 DNA polymerase III su 99.4 1.6E-11 3.5E-16 137.9 17.4 155 145-335 26-207 (944)
80 PRK14960 DNA polymerase III su 99.4 1.5E-11 3.2E-16 134.7 16.5 147 157-337 35-208 (702)
81 TIGR00362 DnaA chromosomal rep 99.3 4.7E-12 1E-16 133.2 12.0 177 143-350 121-312 (405)
82 PRK14086 dnaA chromosomal repl 99.3 5.9E-12 1.3E-16 137.4 12.9 161 160-350 315-490 (617)
83 TIGR02928 orc1/cdc6 family rep 99.3 2.4E-11 5.2E-16 125.3 16.0 141 157-322 38-213 (365)
84 PRK07940 DNA polymerase III su 99.3 8.5E-12 1.8E-16 130.9 12.3 150 156-341 33-209 (394)
85 PRK14961 DNA polymerase III su 99.3 3.3E-11 7E-16 125.3 16.0 147 157-337 36-209 (363)
86 PRK07994 DNA polymerase III su 99.3 3.6E-11 7.8E-16 132.5 17.0 137 157-327 36-197 (647)
87 KOG0989 Replication factor C, 99.3 5.9E-12 1.3E-16 125.5 9.5 163 143-343 44-224 (346)
88 PTZ00112 origin recognition co 99.3 6.5E-11 1.4E-15 131.8 18.5 153 159-336 781-966 (1164)
89 PLN03025 replication factor C 99.3 7.1E-12 1.5E-16 127.9 10.3 148 161-343 36-194 (319)
90 PRK14088 dnaA chromosomal repl 99.3 2.1E-11 4.5E-16 129.8 12.8 174 145-350 118-307 (440)
91 PRK00411 cdc6 cell division co 99.3 5.6E-11 1.2E-15 123.9 15.3 155 157-334 53-237 (394)
92 PRK14958 DNA polymerase III su 99.3 4.4E-11 9.6E-16 129.4 14.9 157 145-337 26-209 (509)
93 PRK08691 DNA polymerase III su 99.3 6.1E-11 1.3E-15 130.7 15.8 159 144-338 25-210 (709)
94 PRK06893 DNA replication initi 99.3 3.4E-11 7.3E-16 117.4 11.3 151 160-346 40-201 (229)
95 PRK06645 DNA polymerase III su 99.3 1.2E-10 2.6E-15 125.7 16.5 149 157-339 41-220 (507)
96 PRK14957 DNA polymerase III su 99.3 1.6E-10 3.5E-15 125.6 17.6 147 157-337 36-209 (546)
97 PRK12402 replication factor C 99.2 6E-11 1.3E-15 120.7 12.8 154 161-343 38-220 (337)
98 PRK05563 DNA polymerase III su 99.2 1.5E-10 3.2E-15 126.7 16.8 148 157-338 36-210 (559)
99 PRK14951 DNA polymerase III su 99.2 1.3E-10 2.7E-15 127.9 16.1 160 143-338 24-215 (618)
100 KOG2028 ATPase related to the 99.2 5E-11 1.1E-15 121.1 11.7 123 160-319 163-292 (554)
101 cd00009 AAA The AAA+ (ATPases 99.2 6.9E-11 1.5E-15 103.0 10.8 128 158-308 18-150 (151)
102 PRK14964 DNA polymerase III su 99.2 1.9E-10 4.2E-15 123.4 16.4 161 144-340 22-209 (491)
103 TIGR03345 VI_ClpV1 type VI sec 99.2 1.9E-10 4E-15 131.4 17.3 160 139-322 575-781 (852)
104 PRK14952 DNA polymerase III su 99.2 2.6E-10 5.6E-15 124.9 17.6 148 143-326 21-195 (584)
105 PRK07764 DNA polymerase III su 99.2 8.5E-11 1.8E-15 133.2 14.2 156 146-337 26-210 (824)
106 PRK14969 DNA polymerase III su 99.2 1.3E-10 2.9E-15 126.2 14.8 147 157-337 36-209 (527)
107 COG0542 clpA ATP-binding subun 99.2 1.4E-10 3.1E-15 128.9 14.6 162 138-322 499-706 (786)
108 TIGR01650 PD_CobS cobaltochela 99.2 7.1E-11 1.5E-15 120.5 11.3 143 159-321 64-233 (327)
109 PRK14959 DNA polymerase III su 99.2 2.4E-10 5.2E-15 125.3 16.1 158 144-337 25-209 (624)
110 TIGR00678 holB DNA polymerase 99.2 1.4E-10 2.9E-15 109.3 12.3 145 157-338 12-181 (188)
111 PF07724 AAA_2: AAA domain (Cd 99.2 6.6E-12 1.4E-16 117.4 3.4 127 159-291 3-133 (171)
112 PRK13341 recombination factor 99.2 1.3E-10 2.8E-15 130.3 13.9 146 159-341 52-210 (725)
113 PRK14963 DNA polymerase III su 99.2 3.7E-10 8E-15 122.1 16.8 146 157-336 34-205 (504)
114 TIGR02397 dnaX_nterm DNA polym 99.2 2.7E-10 5.9E-15 117.0 15.1 149 157-339 34-209 (355)
115 PRK14965 DNA polymerase III su 99.2 1.6E-10 3.4E-15 127.0 13.9 157 145-337 26-209 (576)
116 TIGR02902 spore_lonB ATP-depen 99.2 1.5E-10 3.3E-15 126.0 13.4 163 157-335 84-292 (531)
117 PF07728 AAA_5: AAA domain (dy 99.2 5E-11 1.1E-15 106.4 8.0 120 161-301 1-139 (139)
118 CHL00095 clpC Clp protease ATP 99.2 3.7E-10 8.1E-15 128.9 16.8 163 137-322 516-733 (821)
119 PF00308 Bac_DnaA: Bacterial d 99.2 8.6E-11 1.9E-15 114.0 9.5 187 122-349 4-209 (219)
120 KOG0745 Putative ATP-dependent 99.2 1.8E-10 3.8E-15 119.3 11.2 142 161-306 228-381 (564)
121 PRK06305 DNA polymerase III su 99.2 9.7E-10 2.1E-14 117.5 17.3 152 157-343 37-216 (451)
122 PRK14970 DNA polymerase III su 99.2 7.7E-10 1.7E-14 114.8 16.1 153 157-344 37-204 (367)
123 PRK08084 DNA replication initi 99.1 4.1E-10 8.9E-15 110.3 12.8 147 160-344 46-205 (235)
124 smart00382 AAA ATPases associa 99.1 5.7E-10 1.2E-14 95.9 12.2 125 159-307 2-144 (148)
125 PRK14953 DNA polymerase III su 99.1 7.4E-10 1.6E-14 119.3 15.4 147 157-337 36-209 (486)
126 PRK14087 dnaA chromosomal repl 99.1 3.9E-10 8.5E-15 120.4 13.1 194 122-350 111-321 (450)
127 PRK05642 DNA replication initi 99.1 6.6E-10 1.4E-14 108.8 13.7 160 143-341 29-201 (234)
128 PRK05896 DNA polymerase III su 99.1 4.5E-10 9.8E-15 122.6 13.7 147 157-337 36-209 (605)
129 PRK07133 DNA polymerase III su 99.1 6.5E-10 1.4E-14 123.6 15.1 153 157-337 38-208 (725)
130 PRK11331 5-methylcytosine-spec 99.1 2.8E-10 6E-15 120.3 11.1 137 159-310 194-359 (459)
131 KOG1969 DNA replication checkp 99.1 1E-09 2.2E-14 119.7 15.0 156 160-338 327-500 (877)
132 TIGR03346 chaperone_ClpB ATP-d 99.1 2.3E-09 4.9E-14 122.9 18.7 179 136-337 571-803 (852)
133 PRK06647 DNA polymerase III su 99.1 1.6E-09 3.5E-14 118.6 16.6 147 157-337 36-209 (563)
134 PRK09111 DNA polymerase III su 99.1 1.3E-09 2.9E-14 119.9 15.7 153 157-337 44-222 (598)
135 PRK14948 DNA polymerase III su 99.1 1.9E-09 4.1E-14 119.3 16.6 148 157-338 36-212 (620)
136 PRK10865 protein disaggregatio 99.1 2E-09 4.2E-14 123.3 17.0 143 157-322 595-780 (857)
137 COG1219 ClpX ATP-dependent pro 99.1 5.4E-10 1.2E-14 112.1 10.5 141 160-304 98-250 (408)
138 PRK14955 DNA polymerase III su 99.1 1.2E-09 2.5E-14 115.1 13.1 159 157-344 36-223 (397)
139 PRK06620 hypothetical protein; 99.0 2.4E-09 5.3E-14 103.6 13.4 133 160-344 45-185 (214)
140 PRK08727 hypothetical protein; 99.0 2.1E-09 4.5E-14 105.2 12.9 143 160-341 42-197 (233)
141 PRK14954 DNA polymerase III su 99.0 4.1E-09 8.8E-14 116.3 16.2 164 144-337 25-217 (620)
142 PRK00440 rfc replication facto 99.0 3.9E-09 8.4E-14 106.5 14.4 148 161-343 40-197 (319)
143 COG0714 MoxR-like ATPases [Gen 99.0 1.5E-09 3.2E-14 111.3 11.0 145 160-321 44-203 (329)
144 PRK08903 DnaA regulatory inact 99.0 6.8E-09 1.5E-13 100.5 14.9 144 157-344 40-195 (227)
145 TIGR03420 DnaA_homol_Hda DnaA 99.0 6.9E-09 1.5E-13 99.7 14.9 148 157-343 36-196 (226)
146 KOG0741 AAA+-type ATPase [Post 99.0 3E-09 6.4E-14 112.5 12.8 137 154-312 533-674 (744)
147 PRK08451 DNA polymerase III su 99.0 6E-09 1.3E-13 113.0 14.9 147 157-337 34-207 (535)
148 COG1474 CDC6 Cdc6-related prot 99.0 1.5E-08 3.2E-13 105.6 16.9 140 157-322 40-204 (366)
149 COG0470 HolB ATPase involved i 99.0 2.1E-09 4.5E-14 108.5 10.3 129 157-315 22-175 (325)
150 PHA02244 ATPase-like protein 99.0 2.3E-09 5E-14 110.9 10.4 135 160-317 120-269 (383)
151 PRK14950 DNA polymerase III su 99.0 7.8E-09 1.7E-13 114.0 15.2 149 157-339 36-212 (585)
152 PRK05707 DNA polymerase III su 99.0 9.4E-09 2E-13 105.6 14.5 135 156-321 19-178 (328)
153 PRK08116 hypothetical protein; 98.9 5.4E-09 1.2E-13 104.5 11.5 100 158-288 113-221 (268)
154 COG0542 clpA ATP-binding subun 98.9 9E-09 1.9E-13 114.8 13.8 137 161-322 193-347 (786)
155 TIGR02903 spore_lon_C ATP-depe 98.9 1.4E-08 3E-13 112.5 14.1 162 158-339 174-385 (615)
156 PF05673 DUF815: Protein of un 98.9 2.8E-08 6E-13 97.5 14.6 161 144-337 37-225 (249)
157 PRK14971 DNA polymerase III su 98.9 2.4E-08 5.1E-13 110.6 15.5 147 157-337 37-211 (614)
158 COG1220 HslU ATP-dependent pro 98.9 7E-08 1.5E-12 97.8 16.1 91 222-318 250-346 (444)
159 PRK09112 DNA polymerase III su 98.9 1.4E-07 3E-12 97.9 18.8 152 157-336 43-228 (351)
160 PF07726 AAA_3: ATPase family 98.8 3.7E-09 8E-14 94.1 5.0 118 161-301 1-129 (131)
161 COG0593 DnaA ATPase involved i 98.8 5.8E-08 1.3E-12 101.8 14.5 191 121-350 82-288 (408)
162 PRK12377 putative replication 98.8 2.6E-08 5.7E-13 98.5 11.4 99 159-288 101-206 (248)
163 COG2812 DnaX DNA polymerase II 98.8 1.5E-08 3.3E-13 109.0 9.9 167 144-340 25-212 (515)
164 PRK07471 DNA polymerase III su 98.8 2.2E-07 4.7E-12 97.0 17.9 137 157-321 39-213 (365)
165 PRK09087 hypothetical protein; 98.8 4.9E-08 1.1E-12 95.3 11.6 134 160-341 45-188 (226)
166 PRK04132 replication factor C 98.8 4.3E-08 9.4E-13 111.1 12.7 145 162-340 567-723 (846)
167 PRK06835 DNA replication prote 98.8 2E-08 4.2E-13 103.3 8.9 84 143-235 168-259 (329)
168 PRK07952 DNA replication prote 98.8 4.8E-08 1E-12 96.5 11.2 99 159-288 99-205 (244)
169 PRK06964 DNA polymerase III su 98.8 7.8E-08 1.7E-12 99.3 12.9 136 157-320 19-203 (342)
170 PRK05564 DNA polymerase III su 98.8 1E-07 2.3E-12 97.0 13.6 147 157-337 24-179 (313)
171 PRK08181 transposase; Validate 98.7 4E-08 8.7E-13 98.3 9.4 72 159-236 106-181 (269)
172 PRK06921 hypothetical protein; 98.7 9.9E-08 2.2E-12 95.4 12.2 68 158-233 116-188 (266)
173 PRK08058 DNA polymerase III su 98.7 2.1E-07 4.6E-12 95.7 13.3 137 157-330 26-187 (329)
174 PRK08939 primosomal protein Dn 98.7 1.4E-07 3.1E-12 96.1 11.3 69 158-234 155-229 (306)
175 PRK07399 DNA polymerase III su 98.7 9E-07 2E-11 90.5 16.9 152 157-337 24-213 (314)
176 PRK08769 DNA polymerase III su 98.6 3.9E-07 8.4E-12 93.4 14.0 140 156-330 23-190 (319)
177 PRK06526 transposase; Provisio 98.6 2.5E-08 5.5E-13 99.0 5.0 74 157-235 96-172 (254)
178 PRK06871 DNA polymerase III su 98.6 3.6E-07 7.9E-12 93.8 13.1 132 157-320 22-178 (325)
179 PF01695 IstB_IS21: IstB-like 98.6 3E-08 6.5E-13 93.3 4.1 68 157-234 45-120 (178)
180 TIGR03015 pepcterm_ATPase puta 98.6 3.1E-06 6.7E-11 83.5 17.7 155 159-338 43-228 (269)
181 TIGR00602 rad24 checkpoint pro 98.6 6.6E-07 1.4E-11 99.1 14.2 143 157-322 108-288 (637)
182 PRK07993 DNA polymerase III su 98.6 2.7E-07 5.9E-12 95.1 10.5 142 156-331 21-187 (334)
183 PRK13407 bchI magnesium chelat 98.6 8.9E-08 1.9E-12 98.6 6.8 83 223-321 129-216 (334)
184 smart00350 MCM minichromosome 98.6 6.7E-08 1.4E-12 105.0 5.8 139 160-322 237-401 (509)
185 PRK08699 DNA polymerase III su 98.5 3.3E-07 7.3E-12 94.1 10.2 134 157-319 19-183 (325)
186 COG1484 DnaC DNA replication p 98.5 4.3E-07 9.4E-12 90.2 10.6 69 158-234 104-179 (254)
187 TIGR02031 BchD-ChlD magnesium 98.5 1.2E-07 2.6E-12 104.6 7.1 144 160-321 17-174 (589)
188 PF00158 Sigma54_activat: Sigm 98.5 2.8E-07 6E-12 86.1 8.3 121 157-301 20-154 (168)
189 PRK13531 regulatory ATPase Rav 98.5 2.2E-07 4.8E-12 99.3 8.4 139 160-320 40-193 (498)
190 PF13177 DNA_pol3_delta2: DNA 98.5 4E-07 8.7E-12 84.3 9.1 119 157-306 17-158 (162)
191 TIGR02442 Cob-chelat-sub cobal 98.5 1.9E-07 4.1E-12 104.0 7.9 144 160-321 26-214 (633)
192 PRK06090 DNA polymerase III su 98.5 2.4E-06 5.1E-11 87.6 15.1 133 156-319 22-178 (319)
193 PRK09183 transposase/IS protei 98.5 1.2E-07 2.6E-12 94.3 5.3 74 156-234 99-176 (259)
194 PF05621 TniB: Bacterial TniB 98.4 3.4E-06 7.3E-11 85.3 13.5 205 144-377 46-284 (302)
195 PF13401 AAA_22: AAA domain; P 98.4 1.5E-06 3.3E-11 76.0 9.5 75 158-235 3-100 (131)
196 COG2607 Predicted ATPase (AAA+ 98.4 3.9E-06 8.4E-11 81.9 12.7 151 144-328 70-246 (287)
197 smart00763 AAA_PrkA PrkA AAA d 98.4 3.3E-06 7.2E-11 87.5 12.8 35 158-192 77-118 (361)
198 CHL00081 chlI Mg-protoporyphyr 98.4 1.7E-06 3.6E-11 89.7 9.7 84 222-321 144-232 (350)
199 KOG2170 ATPase of the AAA+ sup 98.3 6.7E-07 1.5E-11 89.6 6.1 108 125-236 80-192 (344)
200 TIGR02030 BchI-ChlI magnesium 98.3 7.7E-07 1.7E-11 91.8 6.6 85 221-321 130-219 (337)
201 TIGR02974 phageshock_pspF psp 98.3 1.6E-06 3.5E-11 89.3 8.8 156 159-337 22-213 (329)
202 PLN03210 Resistant to P. syrin 98.3 1.7E-05 3.7E-10 94.1 17.2 135 156-324 204-367 (1153)
203 PF03969 AFG1_ATPase: AFG1-lik 98.3 4.6E-06 9.9E-11 87.0 10.8 31 155-185 58-88 (362)
204 PF00910 RNA_helicase: RNA hel 98.3 2E-06 4.2E-11 74.1 6.8 105 162-287 1-107 (107)
205 PF13173 AAA_14: AAA domain 98.3 3.9E-06 8.5E-11 74.2 8.7 69 160-234 3-73 (128)
206 PF06309 Torsin: Torsin; Inte 98.3 1E-05 2.2E-10 71.9 11.0 88 140-227 34-126 (127)
207 cd01120 RecA-like_NTPases RecA 98.2 6.3E-06 1.4E-10 73.7 9.8 74 162-237 2-100 (165)
208 PRK11608 pspF phage shock prot 98.2 3.7E-06 7.9E-11 86.5 9.4 160 159-341 29-225 (326)
209 TIGR01817 nifA Nif-specific re 98.2 1.2E-05 2.6E-10 87.9 13.6 160 159-342 219-414 (534)
210 KOG1051 Chaperone HSP104 and r 98.2 1.1E-05 2.4E-10 91.6 13.0 112 157-289 589-712 (898)
211 PRK11388 DNA-binding transcrip 98.2 1.4E-05 2.9E-10 89.3 12.7 155 159-337 348-534 (638)
212 KOG0991 Replication factor C, 98.2 3.4E-06 7.5E-11 82.0 6.7 113 160-304 49-167 (333)
213 PF05729 NACHT: NACHT domain 98.2 2.5E-05 5.4E-10 70.4 12.1 145 160-323 1-165 (166)
214 PHA00729 NTP-binding motif con 98.2 3.7E-06 8E-11 82.0 7.0 27 160-186 18-44 (226)
215 PF06068 TIP49: TIP49 C-termin 98.2 3.1E-06 6.7E-11 87.5 6.7 56 158-214 49-106 (398)
216 PRK15429 formate hydrogenlyase 98.1 1.8E-05 3.9E-10 89.1 13.0 159 158-341 398-594 (686)
217 KOG1514 Origin recognition com 98.1 3E-05 6.6E-10 85.2 13.3 139 160-324 423-592 (767)
218 PF12775 AAA_7: P-loop contain 98.1 3.2E-06 6.9E-11 84.9 5.2 143 159-322 33-194 (272)
219 KOG2035 Replication factor C, 98.1 9.2E-05 2E-09 73.8 15.1 150 160-337 35-217 (351)
220 TIGR00368 Mg chelatase-related 98.1 4.9E-06 1.1E-10 90.1 6.8 25 158-182 210-234 (499)
221 COG1224 TIP49 DNA helicase TIP 98.1 6.7E-06 1.5E-10 84.2 7.2 60 155-215 61-122 (450)
222 COG3829 RocR Transcriptional r 98.1 1.5E-05 3.2E-10 85.7 9.9 190 122-343 241-466 (560)
223 PRK05022 anaerobic nitric oxid 98.1 1.6E-05 3.4E-10 86.6 10.4 164 158-344 209-408 (509)
224 PRK15424 propionate catabolism 98.1 1.8E-05 3.9E-10 86.5 10.3 133 158-314 241-405 (538)
225 TIGR02329 propionate_PrpR prop 98.0 2.1E-05 4.6E-10 85.8 10.6 134 158-314 234-390 (526)
226 PF03215 Rad17: Rad17 cell cyc 98.0 7.4E-05 1.6E-09 81.4 14.7 36 156-191 42-77 (519)
227 PRK10820 DNA-binding transcrip 98.0 3.6E-05 7.8E-10 84.0 12.3 159 161-342 229-423 (520)
228 PTZ00111 DNA replication licen 98.0 6.7E-06 1.5E-10 93.5 6.5 140 160-320 493-656 (915)
229 COG1239 ChlI Mg-chelatase subu 98.0 3.6E-05 7.8E-10 80.6 11.2 85 223-323 145-234 (423)
230 KOG0990 Replication factor C, 98.0 6E-06 1.3E-10 83.5 5.0 133 161-324 64-206 (360)
231 TIGR02237 recomb_radB DNA repa 98.0 5.7E-05 1.2E-09 72.0 11.3 83 154-236 7-111 (209)
232 PF12774 AAA_6: Hydrolytic ATP 98.0 5E-05 1.1E-09 74.5 11.0 140 159-317 32-176 (231)
233 PRK05917 DNA polymerase III su 98.0 4.2E-05 9.2E-10 77.3 10.2 121 156-307 16-152 (290)
234 PF00931 NB-ARC: NB-ARC domain 97.9 0.0001 2.2E-09 73.2 12.3 151 157-344 17-198 (287)
235 PRK15115 response regulator Gl 97.9 5.3E-05 1.2E-09 80.4 10.9 155 159-337 157-347 (444)
236 COG1618 Predicted nucleotide k 97.9 0.00012 2.6E-09 67.7 11.1 27 157-183 3-29 (179)
237 TIGR02915 PEP_resp_reg putativ 97.9 7.4E-05 1.6E-09 79.4 11.2 155 159-337 162-352 (445)
238 cd01124 KaiC KaiC is a circadi 97.9 0.00014 3E-09 67.6 11.2 31 162-192 2-35 (187)
239 PRK10923 glnG nitrogen regulat 97.8 6.8E-05 1.5E-09 80.3 9.9 161 159-342 161-357 (469)
240 COG1221 PspF Transcriptional r 97.8 2.7E-05 5.9E-10 81.8 6.5 134 159-314 101-253 (403)
241 COG1485 Predicted ATPase [Gene 97.8 8.2E-05 1.8E-09 76.4 9.6 107 156-293 62-177 (367)
242 PF13207 AAA_17: AAA domain; P 97.8 2.1E-05 4.5E-10 68.1 4.4 32 161-192 1-32 (121)
243 KOG1968 Replication factor C, 97.8 4.3E-05 9.3E-10 87.3 7.7 156 161-344 359-526 (871)
244 KOG2227 Pre-initiation complex 97.8 0.00056 1.2E-08 72.5 14.9 154 145-324 160-341 (529)
245 PRK11361 acetoacetate metaboli 97.8 0.00027 5.8E-09 75.3 12.9 160 159-342 166-362 (457)
246 PF14532 Sigma54_activ_2: Sigm 97.8 3.9E-05 8.4E-10 68.7 5.4 60 159-236 21-83 (138)
247 PF01637 Arch_ATPase: Archaeal 97.8 0.00095 2.1E-08 63.3 15.2 26 158-183 19-44 (234)
248 PRK09862 putative ATP-dependen 97.8 3.7E-05 8E-10 83.4 6.1 26 158-183 209-234 (506)
249 PRK09376 rho transcription ter 97.7 7.5E-05 1.6E-09 78.3 7.9 75 162-236 172-270 (416)
250 PRK11823 DNA repair protein Ra 97.7 0.00011 2.4E-09 78.7 9.3 79 155-237 76-171 (446)
251 PRK09361 radB DNA repair and r 97.7 9E-05 2E-09 71.6 7.8 40 154-193 18-60 (225)
252 PRK08118 topology modulation p 97.7 0.0001 2.2E-09 68.6 7.5 32 161-192 3-34 (167)
253 PRK07132 DNA polymerase III su 97.7 0.00038 8.3E-09 70.9 11.9 130 157-319 16-160 (299)
254 PHA02774 E1; Provisional 97.7 0.00039 8.5E-09 76.0 12.5 110 145-288 422-533 (613)
255 COG2204 AtoC Response regulato 97.7 0.0002 4.4E-09 76.6 10.0 159 158-341 163-359 (464)
256 PRK00131 aroK shikimate kinase 97.7 5.3E-05 1.2E-09 69.3 4.7 34 157-190 2-35 (175)
257 PRK05818 DNA polymerase III su 97.6 0.00027 5.9E-09 70.4 9.9 122 157-306 5-144 (261)
258 TIGR02012 tigrfam_recA protein 97.6 0.00032 6.9E-09 72.1 10.8 84 154-237 50-148 (321)
259 cd01121 Sms Sms (bacterial rad 97.6 0.00046 9.9E-09 72.4 12.1 79 155-237 78-173 (372)
260 PHA02624 large T antigen; Prov 97.6 0.00036 7.8E-09 76.6 11.4 137 155-314 427-567 (647)
261 PRK07276 DNA polymerase III su 97.6 0.00055 1.2E-08 69.4 12.1 132 157-318 22-172 (290)
262 KOG1970 Checkpoint RAD17-RFC c 97.6 0.00044 9.5E-09 74.5 11.8 35 158-192 109-143 (634)
263 PF00493 MCM: MCM2/3/5 family 97.6 4.9E-05 1.1E-09 78.4 4.6 147 157-323 55-223 (331)
264 PF13671 AAA_33: AAA domain; P 97.6 7.7E-05 1.7E-09 66.2 5.2 32 162-195 2-33 (143)
265 PF13191 AAA_16: AAA ATPase do 97.6 0.00018 3.9E-09 66.3 7.2 38 155-192 20-60 (185)
266 PRK07261 topology modulation p 97.6 0.00019 4.2E-09 66.9 7.2 41 161-201 2-42 (171)
267 cd00983 recA RecA is a bacter 97.6 0.0005 1.1E-08 70.7 10.8 84 154-237 50-148 (325)
268 cd01128 rho_factor Transcripti 97.6 0.00025 5.3E-09 70.4 8.2 79 158-236 15-117 (249)
269 PRK13695 putative NTPase; Prov 97.5 0.00031 6.7E-09 65.3 8.3 23 161-183 2-24 (174)
270 TIGR01818 ntrC nitrogen regula 97.5 0.00017 3.7E-09 77.0 7.4 160 158-341 156-352 (463)
271 PRK06067 flagellar accessory p 97.5 0.00031 6.6E-09 68.4 8.6 81 155-235 21-133 (234)
272 PF05707 Zot: Zonular occluden 97.5 0.00014 3E-09 69.1 5.9 64 222-306 79-142 (193)
273 PF03266 NTPase_1: NTPase; In 97.5 4.2E-05 9.1E-10 71.4 2.0 23 161-183 1-23 (168)
274 PRK10365 transcriptional regul 97.5 0.0013 2.7E-08 69.7 13.4 154 159-337 162-352 (441)
275 cd00984 DnaB_C DnaB helicase C 97.5 0.00072 1.6E-08 65.7 10.7 38 155-192 9-50 (242)
276 cd01394 radB RadB. The archaea 97.5 0.00096 2.1E-08 64.0 11.2 40 154-193 14-56 (218)
277 PRK13947 shikimate kinase; Pro 97.5 0.00041 8.8E-09 63.8 7.9 41 161-203 3-43 (171)
278 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.0012 2.5E-08 64.8 11.5 83 154-236 16-140 (237)
279 PRK06762 hypothetical protein; 97.4 0.00019 4.2E-09 65.8 5.5 38 159-196 2-39 (166)
280 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.0008 1.7E-08 65.1 9.8 83 154-236 14-129 (235)
281 cd00227 CPT Chloramphenicol (C 97.4 0.00029 6.2E-09 65.6 6.4 33 160-192 3-35 (175)
282 TIGR01618 phage_P_loop phage n 97.4 0.00016 3.4E-09 70.5 4.7 76 157-236 10-95 (220)
283 cd03283 ABC_MutS-like MutS-lik 97.4 0.0011 2.4E-08 63.4 10.0 23 160-182 26-48 (199)
284 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.0015 3.3E-08 60.6 10.4 111 161-297 4-144 (159)
285 PRK03839 putative kinase; Prov 97.4 0.00016 3.4E-09 67.5 3.9 31 161-191 2-32 (180)
286 PRK04296 thymidine kinase; Pro 97.4 0.0015 3.2E-08 62.0 10.6 71 160-233 3-89 (190)
287 cd01393 recA_like RecA is a b 97.4 0.0014 3E-08 63.0 10.6 40 154-193 14-62 (226)
288 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.0018 3.8E-08 64.5 11.5 81 155-235 32-144 (259)
289 PF06745 KaiC: KaiC; InterPro 97.4 0.00058 1.3E-08 66.0 7.8 81 154-234 14-127 (226)
290 cd02021 GntK Gluconate kinase 97.3 0.00079 1.7E-08 60.6 8.2 28 162-189 2-29 (150)
291 PRK09354 recA recombinase A; P 97.3 0.0015 3.3E-08 67.8 11.0 84 154-237 55-153 (349)
292 PRK08533 flagellar accessory p 97.3 0.0011 2.5E-08 64.8 9.7 38 155-192 20-60 (230)
293 PLN02200 adenylate kinase fami 97.3 0.00025 5.4E-09 69.7 5.0 40 155-196 39-78 (234)
294 COG3604 FhlA Transcriptional r 97.3 0.00016 3.4E-09 77.2 3.5 167 157-345 244-445 (550)
295 KOG1942 DNA helicase, TBP-inte 97.3 0.00023 5.1E-09 71.5 4.5 56 159-215 64-121 (456)
296 cd00464 SK Shikimate kinase (S 97.3 0.00024 5.2E-09 63.8 4.1 30 162-191 2-31 (154)
297 PRK08233 hypothetical protein; 97.3 0.001 2.2E-08 61.4 8.4 32 159-190 3-35 (182)
298 PRK05537 bifunctional sulfate 97.3 0.0012 2.5E-08 73.0 10.0 68 128-196 362-433 (568)
299 PRK00625 shikimate kinase; Pro 97.3 0.00024 5.3E-09 66.6 4.0 31 161-191 2-32 (173)
300 cd01122 GP4d_helicase GP4d_hel 97.3 0.001 2.2E-08 65.9 8.7 38 155-192 26-67 (271)
301 cd01131 PilT Pilus retraction 97.3 0.00059 1.3E-08 65.1 6.7 24 161-184 3-26 (198)
302 TIGR01313 therm_gnt_kin carboh 97.3 0.00075 1.6E-08 61.7 7.2 28 162-189 1-28 (163)
303 TIGR00764 lon_rel lon-related 97.3 0.00027 5.8E-09 78.6 4.9 84 131-215 9-103 (608)
304 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00025 5.5E-09 65.9 3.9 33 162-196 2-34 (183)
305 KOG3347 Predicted nucleotide k 97.2 0.00024 5.2E-09 65.0 3.3 32 160-191 8-39 (176)
306 TIGR00416 sms DNA repair prote 97.2 0.0034 7.4E-08 67.6 12.6 82 155-236 90-184 (454)
307 PRK14531 adenylate kinase; Pro 97.2 0.00034 7.4E-09 65.7 4.4 34 160-195 3-36 (183)
308 PRK14532 adenylate kinase; Pro 97.2 0.0003 6.4E-09 66.0 3.8 34 161-196 2-35 (188)
309 cd03238 ABC_UvrA The excision 97.2 0.0028 6.1E-08 59.6 10.4 29 156-184 18-46 (176)
310 cd02020 CMPK Cytidine monophos 97.2 0.00032 6.8E-09 62.4 3.6 31 161-191 1-31 (147)
311 cd02027 APSK Adenosine 5'-phos 97.2 0.0011 2.3E-08 60.4 7.1 34 162-195 2-38 (149)
312 PRK06696 uridine kinase; Valid 97.2 0.0011 2.3E-08 64.4 7.3 41 156-196 19-62 (223)
313 PRK05800 cobU adenosylcobinami 97.1 0.0023 4.9E-08 59.9 9.1 34 161-194 3-36 (170)
314 cd01428 ADK Adenylate kinase ( 97.1 0.00039 8.4E-09 65.0 3.9 32 162-195 2-33 (194)
315 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0044 9.4E-08 60.0 11.2 23 159-181 29-51 (213)
316 TIGR02688 conserved hypothetic 97.1 0.0018 4E-08 68.6 9.1 63 156-235 206-273 (449)
317 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.0035 7.7E-08 60.5 10.6 80 155-234 12-119 (224)
318 PRK06547 hypothetical protein; 97.1 0.00051 1.1E-08 64.4 4.5 34 157-190 13-46 (172)
319 PTZ00088 adenylate kinase 1; P 97.1 0.0005 1.1E-08 67.4 4.7 38 157-196 4-41 (229)
320 TIGR00767 rho transcription te 97.1 0.0015 3.2E-08 69.0 8.2 77 160-236 169-269 (415)
321 PRK14527 adenylate kinase; Pro 97.1 0.00044 9.6E-09 65.2 4.0 32 157-188 4-35 (191)
322 PRK13949 shikimate kinase; Pro 97.1 0.00046 9.9E-09 64.3 3.9 31 161-191 3-33 (169)
323 PHA02530 pseT polynucleotide k 97.1 0.0015 3.3E-08 65.7 7.8 35 159-195 2-37 (300)
324 COG0563 Adk Adenylate kinase a 97.1 0.00048 1E-08 65.0 3.9 34 161-196 2-35 (178)
325 PRK06217 hypothetical protein; 97.1 0.00052 1.1E-08 64.4 4.0 31 161-191 3-33 (183)
326 KOG1051 Chaperone HSP104 and r 97.1 0.0023 5E-08 73.2 9.8 137 160-321 209-363 (898)
327 TIGR02858 spore_III_AA stage I 97.1 0.001 2.2E-08 66.9 6.3 26 159-184 111-136 (270)
328 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0012 2.5E-08 65.1 6.6 34 162-195 2-38 (249)
329 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00063 1.4E-08 63.2 4.3 29 160-188 4-32 (188)
330 PRK05986 cob(I)alamin adenolsy 97.0 0.0041 8.8E-08 59.4 9.8 112 160-297 23-164 (191)
331 PRK14530 adenylate kinase; Pro 97.0 0.00062 1.3E-08 65.5 4.3 29 161-189 5-33 (215)
332 TIGR02236 recomb_radA DNA repa 97.0 0.0028 6E-08 64.5 9.2 41 154-194 90-139 (310)
333 PRK09519 recA DNA recombinatio 97.0 0.002 4.2E-08 73.2 8.8 84 154-237 55-153 (790)
334 PRK04040 adenylate kinase; Pro 97.0 0.0007 1.5E-08 64.3 4.5 29 159-187 2-32 (188)
335 PRK13948 shikimate kinase; Pro 97.0 0.00074 1.6E-08 63.9 4.7 35 157-191 8-42 (182)
336 PF14516 AAA_35: AAA-like doma 97.0 0.049 1.1E-06 56.2 18.5 97 131-237 11-142 (331)
337 PRK04301 radA DNA repair and r 97.0 0.0048 1E-07 63.1 10.9 83 155-237 98-213 (317)
338 KOG2383 Predicted ATPase [Gene 97.0 0.001 2.2E-08 69.4 5.9 28 156-183 111-138 (467)
339 PRK04328 hypothetical protein; 97.0 0.0026 5.7E-08 62.9 8.7 38 155-192 19-59 (249)
340 cd00544 CobU Adenosylcobinamid 97.0 0.0037 8.1E-08 58.4 9.2 73 162-237 2-88 (169)
341 PRK12608 transcription termina 97.0 0.0019 4.1E-08 67.5 7.9 76 161-236 135-234 (380)
342 PRK13406 bchD magnesium chelat 97.0 0.011 2.4E-07 65.6 14.2 129 160-307 26-166 (584)
343 COG3854 SpoIIIAA ncharacterize 97.0 0.0016 3.4E-08 63.7 6.6 74 159-232 137-228 (308)
344 KOG0478 DNA replication licens 97.0 0.001 2.2E-08 73.3 5.8 134 159-311 462-616 (804)
345 PRK05973 replicative DNA helic 97.0 0.0073 1.6E-07 59.6 11.3 38 155-192 60-100 (237)
346 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.011 2.4E-07 57.1 12.3 38 155-192 16-56 (229)
347 PF01583 APS_kinase: Adenylyls 97.0 0.0036 7.9E-08 57.9 8.4 60 159-218 2-71 (156)
348 TIGR00708 cobA cob(I)alamin ad 96.9 0.0065 1.4E-07 57.1 10.0 111 161-297 7-146 (173)
349 PRK13946 shikimate kinase; Pro 96.9 0.00078 1.7E-08 63.4 3.8 34 158-191 9-42 (184)
350 COG1241 MCM2 Predicted ATPase 96.9 0.0013 2.9E-08 73.4 6.2 143 160-322 320-484 (682)
351 PF06414 Zeta_toxin: Zeta toxi 96.9 0.0033 7.2E-08 59.8 8.1 44 156-199 12-56 (199)
352 PRK03731 aroL shikimate kinase 96.9 0.00098 2.1E-08 61.4 4.3 31 161-191 4-34 (171)
353 COG0703 AroK Shikimate kinase 96.9 0.00079 1.7E-08 63.1 3.6 32 160-191 3-34 (172)
354 COG5271 MDN1 AAA ATPase contai 96.9 0.0057 1.2E-07 72.9 11.0 147 157-323 1541-1705(4600)
355 TIGR02238 recomb_DMC1 meiotic 96.9 0.0062 1.3E-07 62.5 10.4 82 155-237 92-206 (313)
356 COG1102 Cmk Cytidylate kinase 96.9 0.00084 1.8E-08 62.2 3.5 28 161-188 2-29 (179)
357 PRK02496 adk adenylate kinase; 96.9 0.001 2.2E-08 62.2 4.3 29 161-189 3-31 (184)
358 PLN03187 meiotic recombination 96.9 0.0081 1.7E-07 62.4 11.1 82 155-237 122-236 (344)
359 PRK14528 adenylate kinase; Pro 96.9 0.0011 2.3E-08 62.7 4.2 29 161-189 3-31 (186)
360 TIGR01420 pilT_fam pilus retra 96.9 0.0022 4.7E-08 66.5 6.9 69 160-232 123-205 (343)
361 TIGR01351 adk adenylate kinase 96.9 0.00092 2E-08 64.1 3.8 28 162-189 2-29 (210)
362 COG4619 ABC-type uncharacteriz 96.9 0.0043 9.3E-08 58.2 8.0 26 157-182 27-52 (223)
363 PF13245 AAA_19: Part of AAA d 96.9 0.0018 3.9E-08 52.6 4.8 34 160-193 11-51 (76)
364 PRK00279 adk adenylate kinase; 96.8 0.0011 2.3E-08 63.9 4.0 34 161-196 2-35 (215)
365 PF04665 Pox_A32: Poxvirus A32 96.8 0.026 5.7E-07 55.8 13.6 138 156-321 10-170 (241)
366 COG1373 Predicted ATPase (AAA+ 96.8 0.03 6.6E-07 59.3 15.1 73 156-235 35-107 (398)
367 PRK01184 hypothetical protein; 96.8 0.0012 2.6E-08 61.6 4.1 30 160-190 2-31 (184)
368 cd03243 ABC_MutS_homologs The 96.8 0.012 2.5E-07 56.1 10.8 23 159-181 29-51 (202)
369 PRK15455 PrkA family serine pr 96.8 0.0029 6.3E-08 69.4 7.4 35 158-192 102-137 (644)
370 COG1936 Predicted nucleotide k 96.8 0.00092 2E-08 62.6 3.1 30 161-191 2-31 (180)
371 COG1066 Sms Predicted ATP-depe 96.8 0.0084 1.8E-07 63.1 10.3 102 155-260 89-207 (456)
372 PRK05057 aroK shikimate kinase 96.8 0.0014 3.1E-08 61.1 4.3 34 159-192 4-37 (172)
373 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0081 1.8E-07 54.6 9.1 28 157-184 23-50 (157)
374 PRK08154 anaerobic benzoate ca 96.8 0.0025 5.5E-08 65.1 6.4 49 143-191 116-165 (309)
375 PRK09302 circadian clock prote 96.8 0.0082 1.8E-07 65.4 10.7 82 155-236 27-144 (509)
376 cd03216 ABC_Carb_Monos_I This 96.7 0.0075 1.6E-07 55.6 8.9 28 156-183 23-50 (163)
377 PRK05541 adenylylsulfate kinas 96.7 0.0039 8.5E-08 57.8 6.9 37 156-192 4-43 (176)
378 PF00406 ADK: Adenylate kinase 96.7 0.0011 2.5E-08 59.9 3.2 31 164-196 1-31 (151)
379 PF09848 DUF2075: Uncharacteri 96.7 0.003 6.5E-08 65.5 6.7 24 160-183 2-25 (352)
380 cd03115 SRP The signal recogni 96.7 0.0072 1.6E-07 55.8 8.6 33 161-193 2-37 (173)
381 PRK14737 gmk guanylate kinase; 96.7 0.003 6.5E-08 59.9 6.1 26 158-183 3-28 (186)
382 KOG2543 Origin recognition com 96.7 0.033 7.1E-07 58.2 13.9 93 143-235 14-128 (438)
383 PRK04182 cytidylate kinase; Pr 96.7 0.0016 3.5E-08 59.9 4.1 29 161-189 2-30 (180)
384 PF08433 KTI12: Chromatin asso 96.7 0.0043 9.3E-08 62.3 7.3 75 161-236 3-84 (270)
385 PF05272 VirE: Virulence-assoc 96.7 0.007 1.5E-07 58.1 8.4 30 153-182 46-75 (198)
386 PF13086 AAA_11: AAA domain; P 96.7 0.0021 4.6E-08 60.8 4.8 23 161-183 19-41 (236)
387 PRK14974 cell division protein 96.7 0.016 3.4E-07 60.1 11.5 36 157-192 138-176 (336)
388 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0066 1.4E-07 57.2 8.0 77 156-235 22-102 (177)
389 PF13238 AAA_18: AAA domain; P 96.7 0.0015 3.3E-08 56.3 3.4 22 162-183 1-22 (129)
390 PRK14722 flhF flagellar biosyn 96.7 0.0021 4.5E-08 67.4 5.0 26 157-182 135-160 (374)
391 TIGR00455 apsK adenylylsulfate 96.7 0.0089 1.9E-07 55.9 8.8 40 156-195 15-57 (184)
392 PF01078 Mg_chelatase: Magnesi 96.7 0.0014 3E-08 63.3 3.3 25 159-183 22-46 (206)
393 PF13481 AAA_25: AAA domain; P 96.7 0.0053 1.1E-07 57.4 7.2 24 160-183 33-56 (193)
394 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.014 2.9E-07 55.6 10.1 22 160-181 29-50 (200)
395 PLN02674 adenylate kinase 96.6 0.0019 4.1E-08 64.0 4.3 38 157-196 29-66 (244)
396 smart00534 MUTSac ATPase domai 96.6 0.016 3.4E-07 54.6 10.3 19 162-180 2-20 (185)
397 cd00046 DEXDc DEAD-like helica 96.6 0.002 4.3E-08 55.0 3.9 23 161-183 2-24 (144)
398 TIGR01425 SRP54_euk signal rec 96.6 0.016 3.5E-07 61.8 11.3 37 157-193 98-137 (429)
399 TIGR02525 plasmid_TraJ plasmid 96.6 0.0045 9.7E-08 65.0 6.9 68 161-232 151-235 (372)
400 PF00448 SRP54: SRP54-type pro 96.6 0.009 2E-07 57.1 8.5 34 159-192 1-37 (196)
401 PRK03846 adenylylsulfate kinas 96.6 0.0083 1.8E-07 57.0 8.2 38 157-194 22-62 (198)
402 PTZ00035 Rad51 protein; Provis 96.6 0.018 4E-07 59.6 11.4 82 155-237 114-228 (337)
403 COG4650 RtcR Sigma54-dependent 96.6 0.0039 8.4E-08 63.0 6.0 73 160-236 209-296 (531)
404 cd01130 VirB11-like_ATPase Typ 96.6 0.0065 1.4E-07 57.2 7.3 26 158-183 24-49 (186)
405 PRK00889 adenylylsulfate kinas 96.6 0.007 1.5E-07 56.1 7.4 37 158-194 3-42 (175)
406 cd03227 ABC_Class2 ABC-type Cl 96.6 0.011 2.4E-07 54.4 8.7 24 159-182 21-44 (162)
407 TIGR02173 cyt_kin_arch cytidyl 96.6 0.0022 4.8E-08 58.5 4.0 29 161-189 2-30 (171)
408 cd02019 NK Nucleoside/nucleoti 96.6 0.0035 7.6E-08 49.6 4.6 31 162-192 2-33 (69)
409 PF13479 AAA_24: AAA domain 96.6 0.0046 1E-07 59.6 6.3 72 158-234 2-80 (213)
410 PRK12339 2-phosphoglycerate ki 96.6 0.0028 6.1E-08 60.7 4.7 30 158-187 2-31 (197)
411 PRK00771 signal recognition pa 96.5 0.019 4.1E-07 61.6 11.3 38 157-194 93-133 (437)
412 KOG0482 DNA replication licens 96.5 0.0034 7.5E-08 67.2 5.6 142 159-319 375-537 (721)
413 PLN02459 probable adenylate ki 96.5 0.0032 6.9E-08 62.9 5.1 37 158-196 28-64 (261)
414 PRK14526 adenylate kinase; Pro 96.5 0.0023 5.1E-08 61.9 4.0 32 162-195 3-34 (211)
415 COG5245 DYN1 Dynein, heavy cha 96.5 0.0065 1.4E-07 71.8 8.0 168 158-346 1493-1683(3164)
416 PRK10867 signal recognition pa 96.5 0.02 4.4E-07 61.2 11.4 37 157-193 98-138 (433)
417 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0062 1.4E-07 54.8 6.4 30 157-186 20-49 (133)
418 PLN03186 DNA repair protein RA 96.5 0.012 2.5E-07 61.2 9.3 82 155-237 119-233 (342)
419 PF07693 KAP_NTPase: KAP famil 96.5 0.031 6.8E-07 56.5 12.2 33 154-186 15-47 (325)
420 PRK12338 hypothetical protein; 96.5 0.0029 6.2E-08 65.0 4.6 32 157-188 2-33 (319)
421 cd03282 ABC_MSH4_euk MutS4 hom 96.5 0.024 5.2E-07 54.6 10.7 26 157-182 27-52 (204)
422 TIGR02782 TrbB_P P-type conjug 96.5 0.0036 7.7E-08 63.8 5.3 70 159-232 132-214 (299)
423 COG3284 AcoR Transcriptional a 96.5 0.0027 5.8E-08 69.6 4.5 167 160-345 337-529 (606)
424 TIGR00064 ftsY signal recognit 96.5 0.013 2.9E-07 58.8 9.3 37 157-193 70-109 (272)
425 KOG0480 DNA replication licens 96.5 0.004 8.8E-08 68.2 5.8 144 160-322 379-543 (764)
426 PF13521 AAA_28: AAA domain; P 96.5 0.0024 5.3E-08 58.5 3.5 26 162-188 2-27 (163)
427 PF01443 Viral_helicase1: Vira 96.4 0.0011 2.3E-08 63.9 1.1 22 162-183 1-22 (234)
428 PRK05480 uridine/cytidine kina 96.4 0.0048 1E-07 58.9 5.6 37 157-193 4-41 (209)
429 COG3283 TyrR Transcriptional r 96.4 0.0056 1.2E-07 63.3 6.0 103 162-288 230-344 (511)
430 PRK13975 thymidylate kinase; P 96.4 0.0058 1.3E-07 57.4 5.8 28 160-187 3-30 (196)
431 PRK00300 gmk guanylate kinase; 96.4 0.015 3.3E-07 55.0 8.6 28 157-184 3-30 (205)
432 PTZ00202 tuzin; Provisional 96.4 0.019 4.1E-07 61.4 9.8 46 148-193 275-320 (550)
433 COG1116 TauB ABC-type nitrate/ 96.4 0.013 2.8E-07 57.9 8.1 24 159-182 29-52 (248)
434 TIGR02655 circ_KaiC circadian 96.4 0.012 2.5E-07 63.9 8.6 82 155-236 259-367 (484)
435 TIGR02239 recomb_RAD51 DNA rep 96.3 0.019 4.1E-07 59.0 9.6 82 155-237 92-206 (316)
436 TIGR02655 circ_KaiC circadian 96.3 0.017 3.6E-07 62.8 9.5 38 155-192 17-58 (484)
437 cd01125 repA Hexameric Replica 96.3 0.035 7.5E-07 54.3 10.9 21 162-182 4-24 (239)
438 PRK05439 pantothenate kinase; 96.3 0.0066 1.4E-07 62.2 5.8 40 145-184 72-111 (311)
439 PF00437 T2SE: Type II/IV secr 96.3 0.0066 1.4E-07 60.3 5.6 71 158-232 126-207 (270)
440 PRK14529 adenylate kinase; Pro 96.3 0.0035 7.7E-08 61.2 3.6 34 162-197 3-36 (223)
441 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.011 2.4E-07 53.4 6.6 28 156-183 23-50 (144)
442 PRK13900 type IV secretion sys 96.2 0.0075 1.6E-07 62.4 6.1 71 158-232 159-245 (332)
443 PRK13764 ATPase; Provisional 96.2 0.0062 1.4E-07 67.5 5.8 26 159-184 257-282 (602)
444 cd03284 ABC_MutS1 MutS1 homolo 96.2 0.042 9.1E-07 53.2 10.8 22 160-181 31-52 (216)
445 cd03230 ABC_DR_subfamily_A Thi 96.2 0.016 3.6E-07 53.6 7.6 27 157-183 24-50 (173)
446 TIGR02788 VirB11 P-type DNA tr 96.2 0.0081 1.7E-07 61.3 6.0 73 156-232 141-228 (308)
447 PRK04841 transcriptional regul 96.2 0.12 2.7E-06 59.5 16.4 35 157-192 30-64 (903)
448 cd03287 ABC_MSH3_euk MutS3 hom 96.2 0.039 8.4E-07 53.9 10.4 25 157-181 29-53 (222)
449 COG4178 ABC-type uncharacteriz 96.2 0.019 4.2E-07 63.4 9.1 27 156-182 416-442 (604)
450 COG0194 Gmk Guanylate kinase [ 96.2 0.017 3.7E-07 54.8 7.5 26 159-184 4-29 (191)
451 PRK04220 2-phosphoglycerate ki 96.2 0.0059 1.3E-07 62.2 4.7 33 155-187 88-120 (301)
452 cd00071 GMPK Guanosine monopho 96.1 0.022 4.8E-07 51.1 7.8 25 162-186 2-26 (137)
453 TIGR01526 nadR_NMN_Atrans nico 96.1 0.0097 2.1E-07 61.3 6.2 34 159-192 162-195 (325)
454 TIGR00959 ffh signal recogniti 96.1 0.048 1E-06 58.4 11.6 37 157-193 97-137 (428)
455 TIGR00554 panK_bact pantothena 96.1 0.0087 1.9E-07 60.8 5.7 39 146-184 49-87 (290)
456 PRK13833 conjugal transfer pro 96.1 0.0085 1.8E-07 61.8 5.5 70 159-232 144-225 (323)
457 PRK13894 conjugal transfer ATP 96.1 0.0088 1.9E-07 61.5 5.6 71 158-232 147-229 (319)
458 PF08423 Rad51: Rad51; InterP 96.1 0.022 4.7E-07 56.8 8.2 84 154-237 33-148 (256)
459 PF00485 PRK: Phosphoribulokin 96.1 0.0058 1.3E-07 57.8 3.8 24 161-184 1-24 (194)
460 KOG2228 Origin recognition com 96.0 0.017 3.6E-07 59.5 7.2 136 159-322 49-220 (408)
461 TIGR03499 FlhF flagellar biosy 96.0 0.021 4.5E-07 57.6 7.9 38 157-194 192-234 (282)
462 PF01745 IPT: Isopentenyl tran 96.0 0.0081 1.8E-07 58.3 4.6 38 160-197 2-39 (233)
463 cd02022 DPCK Dephospho-coenzym 96.0 0.0065 1.4E-07 56.9 3.9 32 162-196 2-33 (179)
464 TIGR00665 DnaB replicative DNA 96.0 0.052 1.1E-06 57.8 11.3 38 155-192 191-232 (434)
465 PRK10416 signal recognition pa 96.0 0.028 6.1E-07 57.8 8.8 36 157-192 112-150 (318)
466 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.0 0.014 2.9E-07 55.5 6.1 33 161-193 40-79 (205)
467 PRK14733 coaE dephospho-CoA ki 96.0 0.0089 1.9E-07 57.7 4.8 33 157-189 4-36 (204)
468 PRK08099 bifunctional DNA-bind 96.0 0.012 2.5E-07 62.4 6.1 32 158-189 218-249 (399)
469 cd01129 PulE-GspE PulE/GspE Th 96.0 0.013 2.9E-07 58.6 6.2 73 160-232 81-159 (264)
470 cd03239 ABC_SMC_head The struc 96.0 0.032 6.9E-07 52.5 8.4 24 161-184 24-47 (178)
471 cd03246 ABCC_Protease_Secretio 96.0 0.056 1.2E-06 50.1 10.0 27 157-183 26-52 (173)
472 PRK13808 adenylate kinase; Pro 96.0 0.0063 1.4E-07 62.9 3.9 33 162-196 3-35 (333)
473 COG2074 2-phosphoglycerate kin 96.0 0.0083 1.8E-07 59.4 4.5 34 154-187 84-117 (299)
474 cd03223 ABCD_peroxisomal_ALDP 96.0 0.056 1.2E-06 49.9 9.9 28 156-183 24-51 (166)
475 PRK10078 ribose 1,5-bisphospho 96.0 0.0063 1.4E-07 57.2 3.6 29 160-188 3-31 (186)
476 smart00072 GuKc Guanylate kina 96.0 0.017 3.7E-07 54.2 6.5 25 159-183 2-26 (184)
477 TIGR00235 udk uridine kinase. 95.9 0.0072 1.6E-07 57.8 3.9 27 158-184 5-31 (207)
478 PRK09302 circadian clock prote 95.9 0.043 9.3E-07 59.8 10.3 82 155-236 269-377 (509)
479 PRK12723 flagellar biosynthesi 95.9 0.063 1.4E-06 56.8 11.2 27 157-183 172-198 (388)
480 PRK08356 hypothetical protein; 95.9 0.0087 1.9E-07 56.7 4.4 32 160-194 6-37 (195)
481 TIGR01663 PNK-3'Pase polynucle 95.9 0.017 3.7E-07 63.3 7.0 59 157-226 367-425 (526)
482 cd03213 ABCG_EPDR ABCG transpo 95.9 0.084 1.8E-06 50.0 10.9 28 156-183 32-59 (194)
483 PRK14730 coaE dephospho-CoA ki 95.9 0.0088 1.9E-07 57.1 4.1 33 161-195 3-35 (195)
484 COG0606 Predicted ATPase with 95.9 0.0041 9E-08 66.4 2.0 23 160-182 199-221 (490)
485 cd02024 NRK1 Nicotinamide ribo 95.9 0.0071 1.5E-07 57.6 3.4 29 162-190 2-31 (187)
486 TIGR02322 phosphon_PhnN phosph 95.8 0.0076 1.7E-07 55.9 3.6 25 161-185 3-27 (179)
487 TIGR00017 cmk cytidylate kinas 95.8 0.01 2.2E-07 57.7 4.5 29 160-188 3-31 (217)
488 PRK13851 type IV secretion sys 95.8 0.012 2.6E-07 61.1 5.3 72 157-232 160-246 (344)
489 TIGR03600 phage_DnaB phage rep 95.8 0.059 1.3E-06 57.3 10.6 38 155-192 190-231 (421)
490 PLN02199 shikimate kinase 95.8 0.0097 2.1E-07 60.5 4.4 33 159-191 102-134 (303)
491 PF03796 DnaB_C: DnaB-like hel 95.8 0.033 7.2E-07 55.0 8.1 38 155-192 15-56 (259)
492 COG4088 Predicted nucleotide k 95.8 0.018 3.8E-07 55.7 5.8 24 161-184 3-26 (261)
493 TIGR03263 guanyl_kin guanylate 95.8 0.0067 1.4E-07 56.2 2.9 26 160-185 2-27 (180)
494 PRK05748 replicative DNA helic 95.8 0.086 1.9E-06 56.6 11.8 38 155-192 199-240 (448)
495 PF05970 PIF1: PIF1-like helic 95.8 0.011 2.4E-07 61.7 4.8 28 157-184 20-47 (364)
496 KOG2680 DNA helicase TIP49, TB 95.8 0.0069 1.5E-07 61.3 3.1 57 158-215 65-123 (454)
497 PRK00091 miaA tRNA delta(2)-is 95.8 0.011 2.4E-07 60.5 4.6 35 158-192 3-37 (307)
498 TIGR01613 primase_Cterm phage/ 95.8 0.049 1.1E-06 55.3 9.3 68 156-234 73-140 (304)
499 PRK00023 cmk cytidylate kinase 95.7 0.0099 2.1E-07 58.0 4.1 31 159-189 4-34 (225)
500 cd02028 UMPK_like Uridine mono 95.7 0.012 2.5E-07 55.4 4.4 34 162-195 2-38 (179)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=6.9e-92 Score=711.57 Aligned_cols=410 Identities=74% Similarity=1.135 Sum_probs=388.4
Q ss_pred ccccccccccccCCCCCCcCCccccccccccccccccccccccccceEEEeehhhhhhhhhhcccccccccccccccccC
Q 011914 9 GAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITR 88 (475)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 88 (475)
+++++ .++++++++++++.|.++|||..+++.......+.......+++++.++.||+++|+|+++++|++++||+|++
T Consensus 2 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 80 (413)
T PLN00020 2 GAVNR-ASLSLSAVASGASSPPSSAFLGSKVKVSSRRTSSARKSKSSVPVSEEDESKQSEQSSWRGLAQDISGDDYDITR 80 (413)
T ss_pred ccccc-cccccCCCccCCCCCCchhcccccccccccccccccccccccccccccccccccccchhccccccccchhhhhh
Confidence 56677 88999999999999999999999999865555555556666788899999999999999999999999999999
Q ss_pred CCccccccccCccCCCchhhhhcccccchhhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCC
Q 011914 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGK 168 (475)
Q Consensus 89 ~~~~~d~lf~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPP 168 (475)
|+||||+||+|++|+|+|.+|+++|+|. .+.++|+|+.+++||+|+|+|++.+|++|||+.++++++|+++||||||
T Consensus 81 g~g~vd~lf~~~~~~g~~~~i~~~~~~~---~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPP 157 (413)
T PLN00020 81 GKGMVDSLFQGPFGLGTDSDIASSYDYL---QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGK 157 (413)
T ss_pred cCCchhhhhcCCccCCcchhhhhhhHHH---hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCC
Confidence 9999999999999999999999999886 6777889999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHH-HhCCceeEEeccccccccCCCCCcccchh
Q 011914 169 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLFINDLDAGAGRMGGTTQYTVN 247 (475)
Q Consensus 169 GtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~-~~~~p~ILfIDEiDal~~~r~~~~~~~~~ 247 (475)
|||||++|++||+++|++|+.+++++|.++|+||++++||++|+.|++++ ++.+||||||||||+++++++ .++.+++
T Consensus 158 GcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~ 236 (413)
T PLN00020 158 GQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG-TTQYTVN 236 (413)
T ss_pred CCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC-CCCcchH
Confidence 99999999999999999999999999999999999999999999999777 478999999999999999987 5788899
Q ss_pred hHHHHHHHHhhhcCCCcccCCCcc-ccCCCCCceEEEecCCCCCCccccccCCCceEEEecCCHHHHHHHHHhhcCCCCC
Q 011914 248 NQMVNATLMNIADNPTNVQLPGMY-NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 326 (475)
Q Consensus 248 ~~~v~~~Ll~l~d~~~~v~ldg~~-~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~~P~~eeR~~Il~~~l~~~~v 326 (475)
+++++.+||+++|+|++|+++|.| ..+...+|+||+|||+|+.|||+|+|+||||++||+|+.++|.+||+.++++.++
T Consensus 237 ~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l 316 (413)
T PLN00020 237 NQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGV 316 (413)
T ss_pred HHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCC
Confidence 999999999999999999999998 5567789999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcccHHHHHHHHhhhhhhHH
Q 011914 327 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQE 406 (475)
Q Consensus 327 ~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~~~~t~e~ll~~~~~lv~eqe 406 (475)
+..++.++++.|+|++++|+||+++++|++++++|+.++|.|+++++++++++++|+|++|.+|++.|+++++++++||+
T Consensus 317 ~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~eq~ 396 (413)
T PLN00020 317 SREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVREQE 396 (413)
T ss_pred CHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcc
Q 011914 407 NVKRVQLADKYLSEAAL 423 (475)
Q Consensus 407 ~v~~~~l~~~~~~~~~l 423 (475)
+|++++|+++||+++++
T Consensus 397 ~v~~~~l~~~y~~~~~~ 413 (413)
T PLN00020 397 NVKRVQLSDEYLKNAAL 413 (413)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999998653
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-59 Score=457.54 Aligned_cols=376 Identities=26% Similarity=0.340 Sum_probs=323.1
Q ss_pred CccceeecccccccccccccCCCCCC-cCC--cccccccccccccccccccc-ccccceEEEeehhh----hhhhhhhcc
Q 011914 1 MAAVVSTVGAVNNALPLKINGSSRFS-LVP--SSVFLGKSLKKVSSKVSQQR-ILSKSFKVVSEYDE----EKQTSQDRW 72 (475)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~ 72 (475)
|++..+++++.++ .||..|++++++ ..+ ++.|+++..-|+..-..+-. .-.+.++|....++ -|+|+..||
T Consensus 1 ~~~~~~~al~~~r-~~L~~~~~~~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpry 79 (388)
T KOG0651|consen 1 MMAERNKALAEYR-KPLLSHRSISSALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRY 79 (388)
T ss_pred CchHHHHHHHHhh-hhhhhccchhhHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcE
Confidence 5667778888888 899999999888 455 78899988777644332222 22224455543333 389999999
Q ss_pred cccccccccccccccCCCccccccccCccCCCchhhhhcccccchhhhhccccccccCCCCCChhhHHHHHHHHHHhhhc
Q 011914 73 AGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLN 152 (475)
Q Consensus 73 ~~~~~~~~~~~~~i~~~~~~~d~lf~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~ 152 (475)
- +.|+.|.|+++|++|++|++++|+-+.+.+.+.++...|+|.....++++|+++.+.+|+.++|+|.+.+|+.++++.
T Consensus 80 v-vg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf 158 (388)
T KOG0651|consen 80 V-VGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELF 158 (388)
T ss_pred E-EEcccccchhhhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhc
Confidence 7 999999999999999999999999999988888888789999999999999999999999999999999999999999
Q ss_pred CC-CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 011914 153 LP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231 (475)
Q Consensus 153 ~~-~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEi 231 (475)
++ |+++|+|+|||||||||||++|++||..+|++|+.++++.+.++|.||+.++||+.|+.|+ .+.|||||+|||
T Consensus 159 ~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~----~~~pciifmdei 234 (388)
T KOG0651|consen 159 LRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAR----EVIPCIIFMDEI 234 (388)
T ss_pred cccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHh----hhCceEEeehhh
Confidence 87 9999999999999999999999999999999999999999999999999999999999999 888999999999
Q ss_pred cccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 232 Dal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
|++.+++. +++++++++|+.+||+|++ +|+|+ ....+|++|+|||+|+.|||||+||||+|++|| +|+
T Consensus 235 DAigGRr~--se~Ts~dreiqrTLMeLln-----qmdgf---d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpn 304 (388)
T KOG0651|consen 235 DAIGGRRF--SEGTSSDREIQRTLMELLN-----QMDGF---DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPN 304 (388)
T ss_pred hhhccEEe--ccccchhHHHHHHHHHHHH-----hhccc---hhcccccEEEecCCccccchhhcCCccccceeccCCcc
Confidence 99999984 7999999999999999999 99998 889999999999999999999999999999999 588
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcc
Q 011914 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389 (475)
Q Consensus 310 ~eeR~~Il~~~l~~~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~~~~ 389 (475)
...|..|++ |+++.++|+|++. .+++.+|.+..+-..+ + .... ..+.|..+..
T Consensus 305 e~~r~~I~K-------------------ih~~~i~~~Geid----~eaivK~~d~f~gad~--r-n~~t-Eag~Fa~~~~ 357 (388)
T KOG0651|consen 305 EQARLGILK-------------------IHVQPIDFHGEID----DEAILKLVDGFNGADL--R-NVCT-EAGMFAIPEE 357 (388)
T ss_pred hhhceeeEe-------------------ecccccccccccc----HHHHHHHHhccChHHH--h-hhcc-cccccccchh
Confidence 888888654 4455566666665 5566666666543221 1 1111 2458999999
Q ss_pred cHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q 011914 390 TLDKLLEYGRMLVQEQENVKRVQLADKYLS 419 (475)
Q Consensus 390 t~e~ll~~~~~lv~eqe~v~~~~l~~~~~~ 419 (475)
+-+.+++.+.++++||..+++.+++.+|++
T Consensus 358 ~~~vl~Ed~~k~vrk~~~~kkle~~~~Y~~ 387 (388)
T KOG0651|consen 358 RDEVLHEDFMKLVRKQADAKKLELSLDYKK 387 (388)
T ss_pred hHHHhHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 999999999999999999999999999974
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=348.07 Aligned_cols=189 Identities=24% Similarity=0.345 Sum_probs=176.9
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
|+++|+|+|||||||||||+||+|+|++.++.|+.|.+++|..+|+||..+++|++|+.|+ ..+||||||||||++
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAr----ekaPsIIFiDEIDAI 256 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAR----EKAPSIIFIDEIDAI 256 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHh----hcCCeEEEEechhhh
Confidence 8999999999999999999999999999999999999999999999999999999999888 999999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
..+|.+ ..+..++.|+.++++|+. ||||+ .+..+|-||+||||++.|||||+||||||+.|. +|+.+.
T Consensus 257 g~kR~d--~~t~gDrEVQRTmleLL~-----qlDGF---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~g 326 (406)
T COG1222 257 GAKRFD--SGTSGDREVQRTMLELLN-----QLDGF---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEG 326 (406)
T ss_pred hccccc--CCCCchHHHHHHHHHHHH-----hccCC---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHH
Confidence 998764 334467899999999998 99999 889999999999999999999999999999999 599999
Q ss_pred HHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 313 RIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 313 R~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
|.+||+.|.++ .+++++.+++++++|+|+++. |+|..+-+-|+|+
T Consensus 327 R~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlk---aictEAGm~AiR~ 375 (406)
T COG1222 327 RAEILKIHTRKMNLADDVDLELLARLTEGFSGADLK---AICTEAGMFAIRE 375 (406)
T ss_pred HHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHH---HHHHHHhHHHHHh
Confidence 99999988875 678899999999999999998 8998888888876
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-41 Score=351.33 Aligned_cols=236 Identities=23% Similarity=0.349 Sum_probs=200.4
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..|+..|.|+|||||||||||+||+|+|++.|++|+.|.+++|.++|+||+|+.+|++|.+|+ ..+||||||||+|
T Consensus 539 ~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR----~saPCVIFFDEiD 614 (802)
T KOG0733|consen 539 ALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRAR----ASAPCVIFFDEID 614 (802)
T ss_pred HhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhh----cCCCeEEEecchh
Confidence 348899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
+++++|+.. ...+..+.|+++|. +|||. +...+|.||++||||+.||||++||||||+.+| +|+.
T Consensus 615 aL~p~R~~~-~s~~s~RvvNqLLt---------ElDGl---~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 615 ALVPRRSDE-GSSVSSRVVNQLLT---------ELDGL---EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred hcCcccCCC-CchhHHHHHHHHHH---------Hhccc---ccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 999998743 34455566665553 78888 888999999999999999999999999999999 7999
Q ss_pred HHHHHHHHhhcC--C----CCCChHHHHHHHh--cCCCCchhhHHHHHHHhhHHHHHHHHHHhcch--hhhhhhccCCCC
Q 011914 311 EDRIGVCSGIFR--T----DNVPKEDIVKLVD--TFPGQSIDFFGALRARVYDDEVRKWISEVGIE--RIGKRLVNSKEG 380 (475)
Q Consensus 311 eeR~~Il~~~l~--~----~~v~~~~l~~l~~--~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e--~i~~~lv~~~~~ 380 (475)
++|.+||+.+.+ + .+++++.|+.... +|+|+|+. +|++.+...++++.+.++... .+....
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa---aLvreAsi~AL~~~~~~~~~~~~~~~~~~------ 752 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA---ALVREASILALRESLFEIDSSEDDVTVRS------ 752 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH---HHHHHHHHHHHHHHHhhccccCcccceee------
Confidence 999999999988 2 5677888888766 99999999 999999999999888864221 111110
Q ss_pred CCCcCCCcc---cHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 011914 381 PPTFEQPKM---TLDKLLEYGRMLVQEQENVKRVQLADKYL 418 (475)
Q Consensus 381 ~~~f~~~~~---t~e~ll~~~~~lv~eqe~v~~~~l~~~~~ 418 (475)
.+-.+ .++..++..+..+.+++..+|..|...|-
T Consensus 753 ----~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 753 ----STIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred ----eeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 01122 35666777778899999999999998884
No 5
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-39 Score=344.84 Aligned_cols=190 Identities=24% Similarity=0.419 Sum_probs=170.0
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|+.+|+|||||||||||||++|+++|++.+++|+.|++.+|.++|+|++|+.||++|++|+ ...||||||||||+
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR----~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKAR----QVAPCIIFFDEIDA 538 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHh----hcCCeEEehhhHHh
Confidence 37899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
+.+.|++. ...+.++.+ ++|++ +|||+ +...+|+||++||||+.||+||+||||||+.+| +|+.+
T Consensus 539 i~~~R~g~-~~~v~~RVl-sqLLt--------EmDG~---e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 539 LAGSRGGS-SSGVTDRVL-SQLLT--------EMDGL---EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred HhhccCCC-ccchHHHHH-HHHHH--------Hcccc---cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 99998743 335555555 45554 78898 778999999999999999999999999999999 69999
Q ss_pred HHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHH
Q 011914 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (475)
Q Consensus 312 eR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~ 363 (475)
.|.+||+.++++ +.++++.|++.+++|+|+++. ++|++++..++++-++
T Consensus 606 aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~---~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIV---AVCQEAALLALRESIE 658 (693)
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHH---HHHHHHHHHHHHHhcc
Confidence 999999998886 456777899999999999998 8888888887777555
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-38 Score=337.88 Aligned_cols=239 Identities=20% Similarity=0.334 Sum_probs=199.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
|.++..|||||||||||||++|+|||.++.++|+.|.+++|.++|+|++|+++|++|++|+ ..+||||||||+|++
T Consensus 701 glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR----~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 701 GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERAR----SAAPCVIFFDELDSL 776 (953)
T ss_pred cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhh----ccCCeEEEecccccc
Confidence 6788899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCCC-cccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEec---CCH
Q 011914 235 AGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA---PTR 310 (475)
Q Consensus 235 ~~~r~~~-~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~~---P~~ 310 (475)
++.|+.. ....+.+|.|.+.|. +|||+. +.....|+||+|||||+.|||+|+||||||+.+|+ -+.
T Consensus 777 AP~RG~sGDSGGVMDRVVSQLLA---------ELDgls-~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~ 846 (953)
T KOG0736|consen 777 APNRGRSGDSGGVMDRVVSQLLA---------ELDGLS-DSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDA 846 (953)
T ss_pred CccCCCCCCccccHHHHHHHHHH---------Hhhccc-CCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccH
Confidence 9988742 345566777776665 566662 23778999999999999999999999999999994 477
Q ss_pred HHHHHHHHhhcCC----CCCChHHHHHHHh-cCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcC
Q 011914 311 EDRIGVCSGIFRT----DNVPKEDIVKLVD-TFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE 385 (475)
Q Consensus 311 eeR~~Il~~~l~~----~~v~~~~l~~l~~-~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~ 385 (475)
+.+..||+...++ +++++.++++.+. .|+|+++- ++|+.+...|++|-+..+....+.. .+ ..-.
T Consensus 847 esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlY---sLCSdA~l~AikR~i~~ie~g~~~~-----~e--~~~~ 916 (953)
T KOG0736|consen 847 ESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLY---SLCSDAMLAAIKRTIHDIESGTISE-----EE--QESS 916 (953)
T ss_pred HHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHH---HHHHHHHHHHHHHHHHHhhhccccc-----cc--cCCc
Confidence 8889999977765 5666667777764 78888765 9999999999999988864433322 11 1122
Q ss_pred CCcccHHHHHHHHhh---hhhhHHHHHHHHHHHHH
Q 011914 386 QPKMTLDKLLEYGRM---LVQEQENVKRVQLADKY 417 (475)
Q Consensus 386 ~~~~t~e~ll~~~~~---lv~eqe~v~~~~l~~~~ 417 (475)
...++.+|++++.++ .+.|||...|+.+.++|
T Consensus 917 ~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~f 951 (953)
T KOG0736|consen 917 SVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQF 951 (953)
T ss_pred eEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhh
Confidence 346788999888877 48999999999988877
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-38 Score=317.17 Aligned_cols=241 Identities=22% Similarity=0.292 Sum_probs=203.3
Q ss_pred CCCCC-eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 155 NVKVP-LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 155 ~~~~p-~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
|++.| +|+|++||||||||+||+|||.++|..|+.|+.+.|.++|.|++|+++|-+|+.|+ .+.|++|||||||+
T Consensus 240 GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemAR----fyAPStIFiDEIDs 315 (491)
T KOG0738|consen 240 GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMAR----FYAPSTIFIDEIDS 315 (491)
T ss_pred hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHH----HhCCceeehhhHHH
Confidence 66666 99999999999999999999999999999999999999999999999999999888 99999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCC-CCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~-~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
++.+|++.+. +...++|...|+. ||||+-..... ..|+|+++||.||.||+||+| ||++.|| +|+.
T Consensus 316 lcs~RG~s~E-HEaSRRvKsELLv--------QmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 316 LCSQRGGSSE-HEASRRVKSELLV--------QMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDA 384 (491)
T ss_pred HHhcCCCccc-hhHHHHHHHHHHH--------HhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCH
Confidence 9999986544 4446777777764 88888443333 458899999999999999999 9999999 6999
Q ss_pred HHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCC
Q 011914 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQ 386 (475)
Q Consensus 311 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~ 386 (475)
++|..+++..+.. +.++.++|++.+++|+|++|. .+|+.+.+.++|+.+..+..+.|... ....+....
T Consensus 385 ~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~---nvCreAsm~~mRR~i~g~~~~ei~~l----akE~~~~pv 457 (491)
T KOG0738|consen 385 EARSALIKILLRSVELDDPVNLEDLAERSEGYSGADIT---NVCREASMMAMRRKIAGLTPREIRQL----AKEEPKMPV 457 (491)
T ss_pred HHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHH---HHHHHHHHHHHHHHHhcCCcHHhhhh----hhhcccccc
Confidence 9999999988875 578889999999999999999 99999999999999988765554321 111222333
Q ss_pred CcccHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011914 387 PKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417 (475)
Q Consensus 387 ~~~t~e~ll~~~~~lv~eqe~v~~~~l~~~~ 417 (475)
....++..+...+.+++--...++++|.++|
T Consensus 458 ~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ef 488 (491)
T KOG0738|consen 458 TNEDFEEALRKVRPSVSAADLEKYEKWMDEF 488 (491)
T ss_pred chhhHHHHHHHcCcCCCHHHHHHHHHHHHHh
Confidence 3556788888888888888888888887777
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-38 Score=331.15 Aligned_cols=196 Identities=23% Similarity=0.334 Sum_probs=173.4
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..|+.+|+|+|||||||||||+||++||++++++|+.+++.++.+++.||+|+.||++|++|. ...|||+||||||
T Consensus 217 ~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~----~~aPcivFiDeID 292 (802)
T KOG0733|consen 217 SLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAK----SNAPCIVFIDEID 292 (802)
T ss_pred hcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHh----ccCCeEEEeeccc
Confidence 458999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
++.++|.. .+.++..++|. +|++.+|+..+.. ..+..|+||+|||||+.|||+|+|+||||+.|. +|+.
T Consensus 293 AI~pkRe~-aqreMErRiVa-QLlt~mD~l~~~~-------~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e 363 (802)
T KOG0733|consen 293 AITPKREE-AQREMERRIVA-QLLTSMDELSNEK-------TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSE 363 (802)
T ss_pred ccccchhh-HHHHHHHHHHH-HHHHhhhcccccc-------cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCch
Confidence 99999885 56666666664 5666455322222 125789999999999999999999999999999 6999
Q ss_pred HHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011914 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 364 (475)
Q Consensus 311 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~ 364 (475)
.+|.+||+.+.+. .+++...|++++.+|.|+|+. |||..+..-++.+.+..
T Consensus 364 ~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~---AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 364 TAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLM---ALCREAAFVAIKRILDQ 418 (802)
T ss_pred HHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHH---HHHHHHHHHHHHHHhhc
Confidence 9999999988874 467888999999999999999 99999999999997774
No 9
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=308.01 Aligned_cols=182 Identities=23% Similarity=0.318 Sum_probs=157.5
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
|-+-|+|+||.||||||||+||+|||.+.|++|++.+++++...++|..++.+|.+|..|+ +..||||||||||++
T Consensus 333 GGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk----~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 333 GGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAK----ARAPCIIFIDEIDAV 408 (752)
T ss_pred cCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHH----hcCCeEEEEechhhh
Confidence 5689999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
.++|....+. ..++.+++.| |+|||+ ..+.+|+||++||.|+.||+||.||||||+.+. .||...
T Consensus 409 G~kR~~~~~~-y~kqTlNQLL---------vEmDGF---~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~G 475 (752)
T KOG0734|consen 409 GGKRNPSDQH-YAKQTLNQLL---------VEMDGF---KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRG 475 (752)
T ss_pred cccCCccHHH-HHHHHHHHHH---------HHhcCc---CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCccc
Confidence 9988765443 3344554444 379999 778899999999999999999999999999999 599999
Q ss_pred HHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHH
Q 011914 313 RIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356 (475)
Q Consensus 313 R~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~ 356 (475)
|.+||+.|+.+ ++++++-|+.=+.+|+|++++ ++...+...
T Consensus 476 R~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLa---NlVNqAAlk 520 (752)
T KOG0734|consen 476 RTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLA---NLVNQAALK 520 (752)
T ss_pred HHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHH---HHHHHHHHH
Confidence 99999999886 467777777777777777776 555444433
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-34 Score=303.06 Aligned_cols=194 Identities=22% Similarity=0.339 Sum_probs=176.4
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
.++.+.|||||||||||||+||.++|...++.|+.|.+++|.++|.|.+|+++|.+|.+|+ ..+||||||||+|++
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~----~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQ----SAKPCILFFDEFDSI 772 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhh----ccCCeEEEecccccc
Confidence 4677899999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
+++|+. ..-.+.+|.|++.|. +|||. +...+|.|+++|.||+.|||||+||||+|+.++ +|+..+
T Consensus 773 APkRGh-DsTGVTDRVVNQlLT---------elDG~---Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 773 APKRGH-DSTGVTDRVVNQLLT---------ELDGA---EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CcccCC-CCCCchHHHHHHHHH---------hhccc---cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 999984 344566777776664 68888 778999999999999999999999999999999 799999
Q ss_pred HHHHHHhhcC----CCCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcch
Q 011914 313 RIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 368 (475)
Q Consensus 313 R~~Il~~~l~----~~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e 368 (475)
|++|++.+.. ..+++++.++..+++|+|+|+. +++-.+...++++|+.+.+.+
T Consensus 840 Rl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~l~~~~~~ 896 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEILKREDEE 896 (952)
T ss_pred HHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHhcCcc
Confidence 9999996554 4678899999999999999999 999999999999999986543
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=272.36 Aligned_cols=189 Identities=25% Similarity=0.354 Sum_probs=168.5
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
|+.+|+|+|||||||||||+|++++|+.....|+.+.++++..+|.||..+.+|.+|+.|+ .+.|+||||||+|++
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlak----enapsiifideidai 260 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAK----ENAPSIIFIDEIDAI 260 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHh----ccCCcEEEeehhhhH
Confidence 8999999999999999999999999999999999999999999999999999999999887 999999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
+.+|-+ . .+..++.|...|++++. +|||+ ....+|-||++||+.++|||+|+||||+|+.|. +|++.+
T Consensus 261 atkrfd-a-qtgadrevqril~elln-----qmdgf---dq~~nvkvimatnradtldpallrpgrldrkiefplpdrrq 330 (408)
T KOG0727|consen 261 ATKRFD-A-QTGADREVQRILIELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 330 (408)
T ss_pred hhhhcc-c-cccccHHHHHHHHHHHH-----hccCc---CcccceEEEEecCcccccCHhhcCCccccccccCCCCchhh
Confidence 987653 1 23456788888888888 99999 888999999999999999999999999999999 589888
Q ss_pred HHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 313 RIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 313 R~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
+.-+|..+..+ +.++++++..--+..+|++|. ++|+.+-+.++|+
T Consensus 331 krlvf~titskm~ls~~vdle~~v~rpdkis~adi~---aicqeagm~avr~ 379 (408)
T KOG0727|consen 331 KRLVFSTITSKMNLSDEVDLEDLVARPDKISGADIN---AICQEAGMLAVRE 379 (408)
T ss_pred hhhhHHhhhhcccCCcccCHHHHhcCccccchhhHH---HHHHHHhHHHHHh
Confidence 88888866655 556677777777888899988 8898888888775
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.7e-32 Score=258.96 Aligned_cols=190 Identities=19% Similarity=0.299 Sum_probs=166.8
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|+..|+|+|||||||||||+||+++|+...+.|+.+++++|..+|.|+..+.+|++|-.|+ .+.|+|||.||||+
T Consensus 176 LGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmar----ehapsiifmdeids 251 (404)
T KOG0728|consen 176 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDS 251 (404)
T ss_pred cCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHH----hcCCceEeeecccc
Confidence 38999999999999999999999999999999999999999999999999999999999888 99999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
+...|...+. ..+..|..+.++++. |+||+ +...++-||++||+.+-|||+|+||||.|+.|. .|+.+
T Consensus 252 igs~r~e~~~--ggdsevqrtmlelln-----qldgf---eatknikvimatnridild~allrpgridrkiefp~p~e~ 321 (404)
T KOG0728|consen 252 IGSSRVESGS--GGDSEVQRTMLELLN-----QLDGF---EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 321 (404)
T ss_pred cccccccCCC--CccHHHHHHHHHHHH-----hcccc---ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHH
Confidence 9887654322 235577788888888 99999 889999999999999999999999999999999 48999
Q ss_pred HHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 312 eR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
.|.+|++.+.++ .+++...+++...+.+|+.+. ++|-.+-+-++|+
T Consensus 322 ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk---~vcteagm~alre 371 (404)
T KOG0728|consen 322 ARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVK---GVCTEAGMYALRE 371 (404)
T ss_pred HHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhh---hhhhhhhHHHHHH
Confidence 999999988876 456777777777777777776 6776666666664
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.2e-31 Score=288.01 Aligned_cols=188 Identities=24% Similarity=0.381 Sum_probs=163.7
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
++++|+|+|||||||||||++|+++|++++.+|+.++.+++.++|+|+++++|+++|..|+ +.+||||||||+|++
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~----~~~p~iiFiDEiDs~ 347 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR----KLAPSIIFIDEIDSL 347 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH----cCCCcEEEEEchhhh
Confidence 6789999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
++.|+.... . ...++...|+. +++|. +...+|.||+|||+++.||++++|+||||+.++ .|+.++
T Consensus 348 ~~~r~~~~~-~-~~~r~~~~lL~--------~~d~~---e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 348 ASGRGPSED-G-SGRRVVGQLLT--------ELDGI---EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred hccCCCCCc-h-HHHHHHHHHHH--------HhcCC---CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 998864322 1 22345555554 55566 777889999999999999999999999999999 599999
Q ss_pred HHHHHHhhcCC------CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHH
Q 011914 313 RIGVCSGIFRT------DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 362 (475)
Q Consensus 313 R~~Il~~~l~~------~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i 362 (475)
|.+||+.++.. .+++...+++++++|+|+++. ++++.+...++++..
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~---~i~~ea~~~~~~~~~ 467 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIA---ALVREAALEALREAR 467 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHHhc
Confidence 99999999883 356677888899999999988 778888887777764
No 14
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.8e-32 Score=265.36 Aligned_cols=242 Identities=20% Similarity=0.291 Sum_probs=181.4
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 235 (475)
.++-+||||||||||||++||+++|.+.+..|+.|+.+.|.++|.||++++++++|+.|+ .++|+||||||||+++
T Consensus 163 R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemAR----e~kPSIIFiDEiDslc 238 (439)
T KOG0739|consen 163 RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMAR----ENKPSIIFIDEIDSLC 238 (439)
T ss_pred CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHH----hcCCcEEEeehhhhhc
Confidence 344599999999999999999999999999999999999999999999999999999888 9999999999999999
Q ss_pred cCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHH
Q 011914 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313 (475)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR 313 (475)
++|+++.. +. .+++...|+ |||.|+ -....+|+|+++||-||.||.+++| ||++.|| +|+...|
T Consensus 239 g~r~enEs-ea-sRRIKTEfL--------VQMqGV--G~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR 304 (439)
T KOG0739|consen 239 GSRSENES-EA-SRRIKTEFL--------VQMQGV--GNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHAR 304 (439)
T ss_pred cCCCCCch-HH-HHHHHHHHH--------Hhhhcc--ccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHh
Confidence 98875332 22 344444443 588887 3456889999999999999999999 9999999 6999999
Q ss_pred HHHHHhhcCCC--CCC---hHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHh------cch--hhhhhhccCC-C
Q 011914 314 IGVCSGIFRTD--NVP---KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV------GIE--RIGKRLVNSK-E 379 (475)
Q Consensus 314 ~~Il~~~l~~~--~v~---~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~------~~e--~i~~~lv~~~-~ 379 (475)
..+|+.++... .++ ...+...+++|+|++|. -+.+.+.++-||+..... +.. .....++..- .
T Consensus 305 ~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis---ivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcsp 381 (439)
T KOG0739|consen 305 ARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS---IVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSP 381 (439)
T ss_pred hhhheeccCCCccccchhhHHHHHhhcCCCCcCceE---EEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCC
Confidence 99999998863 333 44777788999999987 444555556566543332 100 0011111110 1
Q ss_pred CCC-------------CcCCCcccHHHHHHHHh---hhhhhHHHHHHHHHHHHHh
Q 011914 380 GPP-------------TFEQPKMTLDKLLEYGR---MLVQEQENVKRVQLADKYL 418 (475)
Q Consensus 380 ~~~-------------~f~~~~~t~e~ll~~~~---~lv~eqe~v~~~~l~~~~~ 418 (475)
+.| ...+|.+|..+++.+.. ..+.|.+..+-.++.++|-
T Consensus 382 gd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 382 GDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred CCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 111 23456778777766544 4578887777777766664
No 15
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-32 Score=298.24 Aligned_cols=196 Identities=21% Similarity=0.290 Sum_probs=160.4
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..|.+.|+|+||+||||||||+||+|+|.|.|+||+.++++++...++|....++|.+|..|+ .+.||||||||||
T Consensus 338 ~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar----~~aP~iifideid 413 (774)
T KOG0731|consen 338 ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR----KNAPSIIFIDEID 413 (774)
T ss_pred HcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh----ccCCeEEEecccc
Confidence 348999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
++...|++..... .++.--++|.+|+ |+|||+ ....+|+||++||+++.||+||+||||||+.++ .|+.
T Consensus 414 a~~~~r~G~~~~~-~~~e~e~tlnQll-----~emDgf---~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~ 484 (774)
T KOG0731|consen 414 AVGRKRGGKGTGG-GQDEREQTLNQLL-----VEMDGF---ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDV 484 (774)
T ss_pred cccccccccccCC-CChHHHHHHHHHH-----HHhcCC---cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCch
Confidence 9998884211111 1122223444433 389999 667999999999999999999999999999999 6999
Q ss_pred HHHHHHHHhhcCCCCC-----ChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011914 311 EDRIGVCSGIFRTDNV-----PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 364 (475)
Q Consensus 311 eeR~~Il~~~l~~~~v-----~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~ 364 (475)
.+|.+|++.|+++.++ ++..++.++.+|+|++|. .+|..+...++|+-...
T Consensus 485 ~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~---n~~neaa~~a~r~~~~~ 540 (774)
T KOG0731|consen 485 KGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA---NLCNEAALLAARKGLRE 540 (774)
T ss_pred hhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH---hhhhHHHHHHHHhccCc
Confidence 9999999999886544 344677778888888887 55666555555543333
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-32 Score=266.24 Aligned_cols=193 Identities=21% Similarity=0.323 Sum_probs=172.7
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
|+++|+|++|||+||||||+||+|+|++....|+++-+++|..+|.|+..+++|++|+.|. .++|+|+||||||++
T Consensus 215 GikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~----e~apSIvFiDEIdAi 290 (440)
T KOG0726|consen 215 GIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE----EHAPSIVFIDEIDAI 290 (440)
T ss_pred CCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHH----hcCCceEEeehhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
..+|-+. .+...+.+..++++|++ |+||+ .....|-||++||+.+.|||+|+||||.|+.|. .|+...
T Consensus 291 GtKRyds--~SggerEiQrtmLELLN-----QldGF---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~T 360 (440)
T KOG0726|consen 291 GTKRYDS--NSGGEREIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360 (440)
T ss_pred ccccccC--CCccHHHHHHHHHHHHH-----hccCc---cccCCeEEEEecccccccCHhhcCCCccccccccCCCchhh
Confidence 8887642 23345788889999998 99999 778999999999999999999999999999999 589999
Q ss_pred HHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011914 313 RIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 364 (475)
Q Consensus 313 R~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~ 364 (475)
+..||..+... ..++++++.---+.++|++|. |+|..+-.-++|+.-..
T Consensus 361 kkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIk---AictEaGllAlRerRm~ 413 (440)
T KOG0726|consen 361 KKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIK---AICTEAGLLALRERRMK 413 (440)
T ss_pred hceeEEEeecccchhccccHHHHhhcccccccccHH---HHHHHHhHHHHHHHHhh
Confidence 99999866654 567888888778899999998 88888887777765444
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2.1e-31 Score=298.51 Aligned_cols=238 Identities=24% Similarity=0.382 Sum_probs=190.0
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.+.++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|+ ...||||||||+|+
T Consensus 482 ~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~----~~~p~iifiDEid~ 557 (733)
T TIGR01243 482 MGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKAR----QAAPAIIFFDEIDA 557 (733)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHH----hcCCEEEEEEChhh
Confidence 36788999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
+++.++......+..+.++ .|+. +|+|. ....+++||+|||+++.||++++||||||+.++ .|+.+
T Consensus 558 l~~~r~~~~~~~~~~~~~~-~lL~--------~ldg~---~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~ 625 (733)
T TIGR01243 558 IAPARGARFDTSVTDRIVN-QLLT--------EMDGI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEE 625 (733)
T ss_pred hhccCCCCCCccHHHHHHH-HHHH--------Hhhcc---cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHH
Confidence 9988764333333344444 4443 45555 456789999999999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCc-CC
Q 011914 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF-EQ 386 (475)
Q Consensus 312 eR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f-~~ 386 (475)
+|.+||+.+.+. .+++.+.+++.+++|+|+++. ++|..+...++++.+.....+.+... .+.+ ..
T Consensus 626 ~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~---~~~~~A~~~a~~~~~~~~~~~~~~~~-------~~~~~~~ 695 (733)
T TIGR01243 626 ARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIE---AVCREAAMAALRESIGSPAKEKLEVG-------EEEFLKD 695 (733)
T ss_pred HHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhhccchhhhcc-------ccccccc
Confidence 999999988775 346678999999999999998 88888888888887765322222110 0001 12
Q ss_pred CcccHHHHHH---HHhhhhhhHHHHHHHHHHHHH
Q 011914 387 PKMTLDKLLE---YGRMLVQEQENVKRVQLADKY 417 (475)
Q Consensus 387 ~~~t~e~ll~---~~~~lv~eqe~v~~~~l~~~~ 417 (475)
..++.+++.+ ..+..+.+++...|.++.+.|
T Consensus 696 ~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~ 729 (733)
T TIGR01243 696 LKVEMRHFLEALKKVKPSVSKEDMLRYERLAKEL 729 (733)
T ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 3566666544 445678888888888887776
No 18
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-32 Score=282.82 Aligned_cols=196 Identities=17% Similarity=0.294 Sum_probs=169.8
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCC-ceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhC----CceeEEe
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG----KMCCLFI 228 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~-~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~----~p~ILfI 228 (475)
.|++..+|||||||||||||++||.|.+.++. ..-.|+++++.++|+|++|.++|.+|..|.+..+.. .--||+|
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIF 330 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIF 330 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEe
Confidence 37888899999999999999999999999976 678899999999999999999999999998777632 2349999
Q ss_pred ccccccccCCCCCcc-cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-
Q 011914 229 NDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 306 (475)
Q Consensus 229 DEiDal~~~r~~~~~-~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~- 306 (475)
||||+++.+|+.... ..+.++.|++.|. .|||+ +...+++||+.|||.+.||+||+|||||+..++
T Consensus 331 DEiDAICKqRGS~~g~TGVhD~VVNQLLs---------KmDGV---eqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 331 DEIDAICKQRGSMAGSTGVHDTVVNQLLS---------KMDGV---EQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred hhhHHHHHhcCCCCCCCCccHHHHHHHHH---------hcccH---HhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 999999998875444 3455677776664 58888 888999999999999999999999999999888
Q ss_pred -cCCHHHHHHHHHhhcCC--------CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011914 307 -APTREDRIGVCSGIFRT--------DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 364 (475)
Q Consensus 307 -~P~~eeR~~Il~~~l~~--------~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~ 364 (475)
+||++.|++|++.+..+ .+++.++++.+++.|+|+.++ ++.+.+..-|+.+.+..
T Consensus 399 sLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle---glVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE---GLVKSAQSFAMNRHVKA 462 (744)
T ss_pred eCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH---HHHHHHHHHHHHhhhcc
Confidence 79999999999866553 678999999999999999998 88887777777776655
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=5e-31 Score=281.40 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=150.2
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|++.|+|+|||||||||||++|+++|++++.+++.++.+.+.++|+|+++++++++|+.|. ..+||||||||||+
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~----~~~P~IL~IDEID~ 329 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAE----ALSPCILWIDEIDK 329 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHH----hcCCcEEEehhhhh
Confidence 47889999999999999999999999999999999999999999999999999999999887 88999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
++..+........ ..++..+|+..++ ....+|+||+|||+++.||++++|+||||+.++ +|+.+
T Consensus 330 ~~~~~~~~~d~~~-~~rvl~~lL~~l~-------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 330 AFSNSESKGDSGT-TNRVLATFITWLS-------------EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hhccccCCCCchH-HHHHHHHHHHHHh-------------cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 9875432222222 2344445555333 446789999999999999999999999999998 69999
Q ss_pred HHHHHHHhhcCCC------CCChHHHHHHHhcCCCCchhhHHHHHHHhh
Q 011914 312 DRIGVCSGIFRTD------NVPKEDIVKLVDTFPGQSIDFFGALRARVY 354 (475)
Q Consensus 312 eR~~Il~~~l~~~------~v~~~~l~~l~~~~~g~~i~f~gal~~~~~ 354 (475)
+|.+||+.++.+. +.+.+.+++.+++|+|++|. +++..+.
T Consensus 396 eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~---~lv~eA~ 441 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIE---QSIIEAM 441 (489)
T ss_pred HHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHH---HHHHHHH
Confidence 9999999888752 45677888888998888887 5554443
No 20
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.1e-31 Score=265.23 Aligned_cols=226 Identities=19% Similarity=0.320 Sum_probs=182.6
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 235 (475)
.++|+|||||||||||||++|+++|++.|.+|+.|+.+.+.++|+|+.+++++.+|.-|. +.+||||||||+|.++
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAs----Kl~P~iIFIDEvds~L 199 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLAS----KLQPSIIFIDEVDSFL 199 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhh----hcCcceeehhhHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999888 9999999999999999
Q ss_pred cCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHH
Q 011914 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313 (475)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR 313 (475)
+.| .. ..+.-.+++...+|.+.| |. .+....+|+|++|||||..||.|++| ||.+.++ +|+.++|
T Consensus 200 ~~R-~s-~dHEa~a~mK~eFM~~WD--------Gl-~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR 266 (386)
T KOG0737|consen 200 GQR-RS-TDHEATAMMKNEFMALWD--------GL-SSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQR 266 (386)
T ss_pred hhc-cc-chHHHHHHHHHHHHHHhc--------cc-cCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhH
Confidence 888 33 334446677777887665 43 33455679999999999999999999 9999988 7999999
Q ss_pred HHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHh-cchhhhhhhccCCCCCC---CcC
Q 011914 314 IGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGPP---TFE 385 (475)
Q Consensus 314 ~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~-~~e~i~~~lv~~~~~~~---~f~ 385 (475)
.+||+.+++.+ +++...++..+++|+|.++- .+|..+....+++++..- +.....+.+...+...+ ...
T Consensus 267 ~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLk---elC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~ 343 (386)
T KOG0737|consen 267 RKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLK---ELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCL 343 (386)
T ss_pred HHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHH---HHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccc
Confidence 99999999874 56777999999999999998 889988888899988872 21112111111111111 122
Q ss_pred CCcccHHHHHHHHhhh
Q 011914 386 QPKMTLDKLLEYGRML 401 (475)
Q Consensus 386 ~~~~t~e~ll~~~~~l 401 (475)
-..++.+++..+.+..
T Consensus 344 ~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 344 LRPLEQEDFPKAINRV 359 (386)
T ss_pred cCcccHHHHHHHHHhh
Confidence 3467778888777644
No 21
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=257.28 Aligned_cols=191 Identities=23% Similarity=0.336 Sum_probs=168.5
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..|+++|+|+|+|||||||||++|+++|.+.+..|+.+.++.|...|.|+..+++|..|.-|+ ..+|+||||||+|
T Consensus 199 ~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAK----EkaP~IIFIDElD 274 (424)
T KOG0652|consen 199 NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAK----EKAPTIIFIDELD 274 (424)
T ss_pred hcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhh----ccCCeEEEEechh
Confidence 348999999999999999999999999999999999999999999999999999999999776 8899999999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
++..+|.+. ....++.|..+.++++. |+||+ ....+|-||++||+.+.|||+|+|.||+|+.|. .|+.
T Consensus 275 AIGtKRfDS--ek~GDREVQRTMLELLN-----QLDGF---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne 344 (424)
T KOG0652|consen 275 AIGTKRFDS--EKAGDREVQRTMLELLN-----QLDGF---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 344 (424)
T ss_pred hhccccccc--cccccHHHHHHHHHHHH-----hhcCC---CCccceEEEeecccccccCHHHhhcccccccccCCCCCh
Confidence 998876642 23346788899999998 99999 788999999999999999999999999999999 4899
Q ss_pred HHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 311 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
+.|..|++.+.++ .+++.++++.-++.|.|+... |+|-.+-+-++|+
T Consensus 345 ~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK---AVcVEAGMiALRr 395 (424)
T KOG0652|consen 345 EARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK---AVCVEAGMIALRR 395 (424)
T ss_pred HHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe---eeehhhhHHHHhc
Confidence 9999999988775 567788888888888887666 6666666666554
No 22
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=280.46 Aligned_cols=232 Identities=22% Similarity=0.309 Sum_probs=180.1
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
|.+.|+|+||+||||||||+||+++|.+.++||+.+|++++...++|-....+|.+|.+|+ +++||||||||||++
T Consensus 179 GakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAk----k~aP~IIFIDEiDAv 254 (596)
T COG0465 179 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK----KNAPCIIFIDEIDAV 254 (596)
T ss_pred ccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhh----ccCCCeEEEehhhhc
Confidence 5699999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
...|+.. ....+...-++|.+++ |+|||+ ..+..|.||++||||+.+|+||+||||||+.+. .|+...
T Consensus 255 Gr~Rg~g--~GggnderEQTLNQlL-----vEmDGF---~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 255 GRQRGAG--LGGGNDEREQTLNQLL-----VEMDGF---GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred ccccCCC--CCCCchHHHHHHHHHH-----hhhccC---CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 8877532 1111222233444433 489998 567899999999999999999999999999999 699999
Q ss_pred HHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHh---cchhhhhhhccCCCCCC-Cc
Q 011914 313 RIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV---GIERIGKRLVNSKEGPP-TF 384 (475)
Q Consensus 313 R~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~---~~e~i~~~lv~~~~~~~-~f 384 (475)
|.+|++.|.+. ..+++..+++.+.+|+|+++. .++..+..-+.|+.-..+ +.+.-..+++...+..+ .+
T Consensus 325 Re~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~---nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vi 401 (596)
T COG0465 325 REQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLA---NLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVI 401 (596)
T ss_pred HHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHh---hhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCccc
Confidence 99999988775 356777899999999999988 666555555555433333 22222233333333222 35
Q ss_pred CCCcccHHHHHHHHhhhhh
Q 011914 385 EQPKMTLDKLLEYGRMLVQ 403 (475)
Q Consensus 385 ~~~~~t~e~ll~~~~~lv~ 403 (475)
.+......+.++++|.++.
T Consensus 402 se~ek~~~AYhEaghalv~ 420 (596)
T COG0465 402 SEAEKKITAYHEAGHALVG 420 (596)
T ss_pred ChhhhcchHHHHHHHHHHH
Confidence 5555566677888887654
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-31 Score=257.16 Aligned_cols=189 Identities=21% Similarity=0.314 Sum_probs=162.4
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|+.+|+|+|||||||||||+.|+++|+..+.-|+.+-+++|..+|+||..+.+|++|+.|+ ..+-|||||||||+
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mar----tkkaciiffdeida 281 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR----TKKACIIFFDEIDA 281 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhc----ccceEEEEeecccc
Confidence 38999999999999999999999999999999999999999999999999999999999887 88999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
+.+.|-+... ..+..|..+.++|+. |+||+ ....++-|+++||+|+.|||+|+||||+|+.+. +|+.+
T Consensus 282 iggarfddg~--ggdnevqrtmleli~-----qldgf---dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 282 IGGARFDDGA--GGDNEVQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred ccCccccCCC--CCcHHHHHHHHHHHH-----hccCC---CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCccc
Confidence 9876532211 123467778888887 99999 888999999999999999999999999999988 79999
Q ss_pred HHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHH
Q 011914 312 DRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359 (475)
Q Consensus 312 eR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~ 359 (475)
.|..||+.+.+.- ++-.+-++.|+..-+|+.+. .+|-.+-+-+++
T Consensus 352 grt~i~kihaksmsverdir~ellarlcpnstgaeir---svcteagmfair 400 (435)
T KOG0729|consen 352 GRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR---SVCTEAGMFAIR 400 (435)
T ss_pred ccceeEEEeccccccccchhHHHHHhhCCCCcchHHH---HHHHHhhHHHHH
Confidence 9999999887753 45566888888887777776 555555555544
No 24
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.3e-30 Score=278.34 Aligned_cols=239 Identities=20% Similarity=0.272 Sum_probs=180.1
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc----------eEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCC
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 222 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~----------~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~ 222 (475)
..|+++|+++|||||||||||++|+++|++++.+ |+.++.+++.++|.|++++.++.+|..|+..+..+.
T Consensus 210 ~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~ 289 (512)
T TIGR03689 210 EYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGR 289 (512)
T ss_pred hccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 3478899999999999999999999999998654 667788889999999999999999999987776778
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCce
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd 302 (475)
||||||||+|+++.+|+.....+...+.+ ..|++ +|||. ....+++||+|||+++.||++|+||||||
T Consensus 290 p~IIfIDEiD~L~~~R~~~~s~d~e~~il-~~LL~--------~LDgl---~~~~~ViVI~ATN~~d~LDpALlRpGRfD 357 (512)
T TIGR03689 290 PVIVFFDEMDSIFRTRGSGVSSDVETTVV-PQLLS--------ELDGV---ESLDNVIVIGASNREDMIDPAILRPGRLD 357 (512)
T ss_pred CceEEEehhhhhhcccCCCccchHHHHHH-HHHHH--------Hhccc---ccCCceEEEeccCChhhCCHhhcCccccc
Confidence 99999999999998776433333333333 44444 45565 44578999999999999999999999999
Q ss_pred EEEe--cCCHHHHHHHHHhhcCCC-CCChHHHHHHHhcCCCCchh-----------------------------------
Q 011914 303 KFYW--APTREDRIGVCSGIFRTD-NVPKEDIVKLVDTFPGQSID----------------------------------- 344 (475)
Q Consensus 303 ~~i~--~P~~eeR~~Il~~~l~~~-~v~~~~l~~l~~~~~g~~i~----------------------------------- 344 (475)
..|+ .|+.++|.+||+.++... .+ .+++. ...++.++++.
T Consensus 358 ~~I~~~~Pd~e~r~~Il~~~l~~~l~l-~~~l~-~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~ 435 (512)
T TIGR03689 358 VKIRIERPDAEAAADIFSKYLTDSLPL-DADLA-EFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFK 435 (512)
T ss_pred eEEEeCCCCHHHHHHHHHHHhhccCCc-hHHHH-HhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeec
Confidence 9988 599999999999998753 33 22222 23455544443
Q ss_pred --hHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcccHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Q 011914 345 --FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 421 (475)
Q Consensus 345 --f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~~~~t~e~ll~~~~~lv~eqe~v~~~~l~~~~~~~~ 421 (475)
++||+.+.+++++-...+.+ .+ .-....++.++|+.+......|++.+.....+++|.+..
T Consensus 436 d~~sGa~i~~iv~~a~~~ai~~--------~~--------~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~~~w~~~~ 498 (512)
T TIGR03689 436 DFVSGAMIANIVDRAKKRAIKD--------HI--------TGGQVGLRIEHLLAAVLDEFRESEDLPNTTNPDDWARIS 498 (512)
T ss_pred ccccHHHHHHHHHHHHHHHHHH--------HH--------hcCCcCcCHHHHHHHHHHhhcccccCCCCCCHHHHhhhh
Confidence 22333333333333322222 00 012357889999999999999999999999999998763
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=249.90 Aligned_cols=196 Identities=23% Similarity=0.305 Sum_probs=158.7
Q ss_pred HHHHhhhcCC---CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhC
Q 011914 145 HITKNFLNLP---NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221 (475)
Q Consensus 145 ~i~k~~l~~~---~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~ 221 (475)
.++-.||..| +-=.|+.+|+|||||||||++|+++|++...+++.|.+.+|...++|+.++.|+++|.+|+ +.
T Consensus 134 rli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~----~~ 209 (368)
T COG1223 134 RLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERAR----KA 209 (368)
T ss_pred HHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHH----hc
Confidence 3444555544 4456899999999999999999999999999999999999999999999999999999999 89
Q ss_pred CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCc
Q 011914 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 301 (475)
Q Consensus 222 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRf 301 (475)
.|||+||||+|+++-.|.-.+...--...|++.|. +|||. ..+.+|..|++||+|+.||+++++ ||
T Consensus 210 aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLT---------elDgi---~eneGVvtIaaTN~p~~LD~aiRs--RF 275 (368)
T COG1223 210 APCIVFIDELDAIALDRRYQELRGDVSEIVNALLT---------ELDGI---KENEGVVTIAATNRPELLDPAIRS--RF 275 (368)
T ss_pred CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHH---------hccCc---ccCCceEEEeecCChhhcCHHHHh--hh
Confidence 99999999999997654321111111345555443 67787 688999999999999999999999 99
Q ss_pred eEEEe--cCCHHHHHHHHHhhcCCCC----CChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011914 302 EKFYW--APTREDRIGVCSGIFRTDN----VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 364 (475)
Q Consensus 302 d~~i~--~P~~eeR~~Il~~~l~~~~----v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~ 364 (475)
+..|. +|+.++|++|++.+.++-+ .+...+++.+.+|+|.+|. .++...++.+.+.+
T Consensus 276 EeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik------ekvlK~aLh~Ai~e 338 (368)
T COG1223 276 EEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK------EKVLKTALHRAIAE 338 (368)
T ss_pred hheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH------HHHHHHHHHHHHHh
Confidence 99888 7999999999999988643 4466899999999999875 44445555554444
No 26
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=264.94 Aligned_cols=191 Identities=22% Similarity=0.312 Sum_probs=158.8
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..|+.+|+++|||||||||||++|+++|++++.+|+.+.++.+..+|.|++++.++++|..|+ ..+|+||||||+|
T Consensus 173 ~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~----~~~P~ILfIDEID 248 (398)
T PTZ00454 173 QIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLAR----ENAPSIIFIDEVD 248 (398)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHH----hcCCeEEEEECHh
Confidence 347889999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
+++.++.+... .....+...+.+++. +++|. ....++.||+|||+++.||++++|+||||+.|+ .|+.
T Consensus 249 ~i~~~r~~~~~--~~d~~~~r~l~~LL~-----~ld~~---~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 249 SIATKRFDAQT--GADREVQRILLELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred hhccccccccC--CccHHHHHHHHHHHH-----Hhhcc---CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCH
Confidence 99877642111 112233344455444 56655 445689999999999999999999999999998 5999
Q ss_pred HHHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 311 EDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 311 eeR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
++|.+||+.++.+. +++.+.++..+++|+|+++. ++|..+...++++
T Consensus 319 ~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~---~l~~eA~~~A~r~ 369 (398)
T PTZ00454 319 RQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIA---AICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHc
Confidence 99999999888753 46677888889999998888 7787777776654
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=3.5e-29 Score=261.53 Aligned_cols=191 Identities=23% Similarity=0.351 Sum_probs=160.4
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..|+.+|+++|||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..|. ...|+||||||+|
T Consensus 159 ~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~IlfiDEiD 234 (389)
T PRK03992 159 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAR----EKAPSIIFIDEID 234 (389)
T ss_pred hcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHH----hcCCeEEEEechh
Confidence 347889999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
+++.++.+... .....+...++.++. +++|. ....++.||+|||+++.||++++||||||+.++ .|+.
T Consensus 235 ~l~~~r~~~~~--~~~~~~~~~l~~lL~-----~ld~~---~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 235 AIAAKRTDSGT--SGDREVQRTLMQLLA-----EMDGF---DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred hhhcccccCCC--CccHHHHHHHHHHHH-----hcccc---CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCH
Confidence 99887653221 112334455555554 56665 445689999999999999999999999999988 6999
Q ss_pred HHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 311 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
++|.+||+.++.. .+++.+.++..+++|+|+++. +++.++...++++
T Consensus 305 ~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~---~l~~eA~~~a~~~ 355 (389)
T PRK03992 305 EGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLK---AICTEAGMFAIRD 355 (389)
T ss_pred HHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHc
Confidence 9999999988875 346777999999999999888 7777777666554
No 28
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=2.9e-29 Score=290.14 Aligned_cols=183 Identities=10% Similarity=0.076 Sum_probs=144.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCC----------CC-----------------------
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN----------AG----------------------- 201 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~----------~G----------------------- 201 (475)
|.++|+||||+||||||||+||+++|.+++++|+.|+++++.+++ +|
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 678999999999999999999999999999999999999988654 12
Q ss_pred --------ChHH--HHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcc
Q 011914 202 --------EPAK--LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271 (475)
Q Consensus 202 --------e~e~--~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~ 271 (475)
+.+. .|+.+|+.|+ +.+||||||||||++..+.. +......|++ +|+|..
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelAR----k~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLn--------eLDg~~ 1765 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAK----AMSPCIIWIPNIHDLNVNES--------NYLSLGLLVN--------SLSRDC 1765 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHH----HCCCeEEEEEchhhcCCCcc--------ceehHHHHHH--------Hhcccc
Confidence 2222 3888999888 89999999999999986521 1122345555 444431
Q ss_pred ccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHHHHHHHhhc-------CCCCCChHHHHHHHhcCCCCc
Q 011914 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIF-------RTDNVPKEDIVKLVDTFPGQS 342 (475)
Q Consensus 272 ~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l-------~~~~v~~~~l~~l~~~~~g~~ 342 (475)
......+|+||||||+|+.|||||+||||||+.|+ .|+..+|.+++..++ ....++.+.++..+.+|+|+|
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 11345789999999999999999999999999999 488888888876432 223356789999999999999
Q ss_pred hhhHHHHHHHhhHHHHHH
Q 011914 343 IDFFGALRARVYDDEVRK 360 (475)
Q Consensus 343 i~f~gal~~~~~~~av~~ 360 (475)
+. +++.++...++++
T Consensus 1846 La---nLvNEAaliAirq 1860 (2281)
T CHL00206 1846 LV---ALTNEALSISITQ 1860 (2281)
T ss_pred HH---HHHHHHHHHHHHc
Confidence 98 7777777766665
No 29
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.1e-29 Score=258.56 Aligned_cols=233 Identities=18% Similarity=0.241 Sum_probs=181.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
.+++++||.||||+|||+|+++||.|.+..|+.++++.|.++|+|+.++.+|.+|.-|+ ..+|+|+||||+|+++.
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr----~~qPsvifidEidslls 259 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVAR----SLQPSVIFIDEIDSLLS 259 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHH----hcCCeEEEechhHHHHh
Confidence 45699999999999999999999999999999999999999999999999999999888 99999999999999999
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHHH
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 314 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~ 314 (475)
+|.+ ..++...++...+|++ ++|. .....++|+||+|||+||.+|.+++| ||.+++| .|+.+.|.
T Consensus 260 ~Rs~-~e~e~srr~ktefLiq---------~~~~-~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~ 326 (428)
T KOG0740|consen 260 KRSD-NEHESSRRLKTEFLLQ---------FDGK-NSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRS 326 (428)
T ss_pred hcCC-cccccchhhhhHHHhh---------hccc-cCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHH
Confidence 8854 4555666777777765 3433 33556799999999999999999999 9999999 59999999
Q ss_pred HHHHhhcCCCC-----CChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcc
Q 011914 315 GVCSGIFRTDN-----VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389 (475)
Q Consensus 315 ~Il~~~l~~~~-----v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~~~~ 389 (475)
.||++++...+ .+.+.+++++++|+|.++. ++|..+...-++.-.... .+ ........+|.+.+
T Consensus 327 ~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~---~l~kea~~~p~r~~~~~~---~~--~~~~~~~~r~i~~~--- 395 (428)
T KOG0740|consen 327 LLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT---ALCKEAAMGPLRELGGTT---DL--EFIDADKIRPITYP--- 395 (428)
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH---HHHHHhhcCchhhcccch---hh--hhcchhccCCCCcc---
Confidence 99999988652 2345888999999999999 888888776555433320 01 11111221222211
Q ss_pred cHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011914 390 TLDKLLEYGRMLVQEQENVKRVQLADKY 417 (475)
Q Consensus 390 t~e~ll~~~~~lv~eqe~v~~~~l~~~~ 417 (475)
..+...+..+..+..+...+|..+...+
T Consensus 396 df~~a~~~i~~~~s~~~l~~~~~~~~~f 423 (428)
T KOG0740|consen 396 DFKNAFKNIKPSVSLEGLEKYEKWDKEF 423 (428)
T ss_pred hHHHHHHhhccccCccccchhHHHhhhh
Confidence 2344556666677777777777766555
No 30
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=1.3e-28 Score=264.69 Aligned_cols=186 Identities=21% Similarity=0.295 Sum_probs=151.0
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.+.+.|+++|||||||||||++|+++|++++.+|+.++++++.+.+.|+.++.++.+|..|+ ...||||||||||+
T Consensus 83 ~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~Il~iDEid~ 158 (495)
T TIGR01241 83 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK----KNAPCIIFIDEIDA 158 (495)
T ss_pred cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHH----hcCCCEEEEechhh
Confidence 36788999999999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred cccCCCCCcc--cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 234 GAGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 234 l~~~r~~~~~--~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
++.++..... .....+.++.+| . +|++. ....+++||+|||+++.||++++||||||+.++ .|+
T Consensus 159 l~~~r~~~~~~~~~~~~~~~~~lL-~--------~~d~~---~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd 226 (495)
T TIGR01241 159 VGRQRGAGLGGGNDEREQTLNQLL-V--------EMDGF---GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226 (495)
T ss_pred hhhccccCcCCccHHHHHHHHHHH-h--------hhccc---cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC
Confidence 9887653211 111223333333 2 55555 445679999999999999999999999999999 599
Q ss_pred HHHHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHH
Q 011914 310 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358 (475)
Q Consensus 310 ~eeR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av 358 (475)
.++|.+||+.++... .++.+.++..+.+|+|+++. +++.++...++
T Consensus 227 ~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~---~l~~eA~~~a~ 276 (495)
T TIGR01241 227 IKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLA---NLLNEAALLAA 276 (495)
T ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHH---HHHHHHHHHHH
Confidence 999999999988764 34566788888888888877 66655544443
No 31
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=1.7e-28 Score=258.65 Aligned_cols=190 Identities=22% Similarity=0.332 Sum_probs=157.7
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|+.+|+++|||||||||||++|+++|++++.+|+.+..+++.++|.|+.++.++.+|..|. .+.|+||||||||+
T Consensus 212 ~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~----~~~P~ILfIDEID~ 287 (438)
T PTZ00361 212 IGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAE----ENAPSIVFIDEIDA 287 (438)
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHH----hCCCcEEeHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999887 88999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
++.++..... ...+.+..++++++. +++|+ ....++.||+|||+++.||++++|+||||+.|+ .|+.+
T Consensus 288 l~~kR~~~~s--gg~~e~qr~ll~LL~-----~Ldg~---~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~ 357 (438)
T PTZ00361 288 IGTKRYDATS--GGEKEIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEK 357 (438)
T ss_pred HhccCCCCCC--cccHHHHHHHHHHHH-----HHhhh---cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHH
Confidence 9887643111 112233344444444 56665 445689999999999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 312 eR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
+|.+||+.++.+ .+++.++++..+++|+|+++. ++|..+...|+++
T Consensus 358 ~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~---~i~~eA~~~Alr~ 407 (438)
T PTZ00361 358 TKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIK---AICTEAGLLALRE 407 (438)
T ss_pred HHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHh
Confidence 999999988765 456777888899999988887 7777766666654
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5e-28 Score=258.02 Aligned_cols=238 Identities=24% Similarity=0.322 Sum_probs=188.6
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCC-ceeEEecccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLFINDLD 232 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~-p~ILfIDEiD 232 (475)
.++++|+++|+|||||||||+++++||++.+..++.++++++.+++.||+++++|+.|++|. +++ |+||||||+|
T Consensus 213 ~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~----k~~~psii~IdEld 288 (693)
T KOG0730|consen 213 IGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEAL----KFQVPSIIFIDELD 288 (693)
T ss_pred cCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHh----ccCCCeeEeHHhHh
Confidence 47899999999999999999999999999999999999999999999999999999999998 888 9999999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
++++++... .. ..+++...|+.+++ |+ ....+++||+|||+++.||++++| ||||+.+. +|+.
T Consensus 289 ~l~p~r~~~-~~--~e~Rv~sqlltL~d--------g~---~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~ 353 (693)
T KOG0730|consen 289 ALCPKREGA-DD--VESRVVSQLLTLLD--------GL---KPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGS 353 (693)
T ss_pred hhCCccccc-ch--HHHHHHHHHHHHHh--------hC---cCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCc
Confidence 999988742 22 45677788888777 33 456899999999999999999999 99999988 6999
Q ss_pred HHHHHHHHhhcCCCC----CChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCC---CCCC
Q 011914 311 EDRIGVCSGIFRTDN----VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKE---GPPT 383 (475)
Q Consensus 311 eeR~~Il~~~l~~~~----v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~---~~~~ 383 (475)
.+|.+|++.+.+..+ .++.+++..+.+|.|+|+. ++|..+...++++-.+.. -..+.+.+. ....
T Consensus 354 ~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~---~l~~ea~~~~~r~~~~~~-----~~A~~~i~psa~Re~~ 425 (693)
T KOG0730|consen 354 DGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA---ALCREASLQATRRTLEIF-----QEALMGIRPSALREIL 425 (693)
T ss_pred hhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH---HHHHHHHHHHhhhhHHHH-----HHHHhcCCchhhhhee
Confidence 999999998887643 4456888889999999998 899999888888822221 111111111 1233
Q ss_pred cCCCcccHHHH--HHHHhhhhhhHHHH-HHHHHHHHHhhh
Q 011914 384 FEQPKMTLDKL--LEYGRMLVQEQENV-KRVQLADKYLSE 420 (475)
Q Consensus 384 f~~~~~t~e~l--l~~~~~lv~eqe~v-~~~~l~~~~~~~ 420 (475)
.+.++++++++ ++..+...+ +.| -..+.+++|.+.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq--~~V~~p~~~pe~F~r~ 463 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQ--QAVEWPLKHPEKFARF 463 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHH--HHHhhhhhchHHHHHh
Confidence 57788888887 344333322 223 235666777665
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=1.9e-27 Score=261.19 Aligned_cols=186 Identities=23% Similarity=0.319 Sum_probs=147.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+.+.|+++|||||||||||++|+++|++++.+|+.++++++...+.|.....++.+|..|. ...||||||||||++
T Consensus 212 g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~----~~~P~ILfIDEID~l 287 (638)
T CHL00176 212 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAK----ENSPCIVFIDEIDAV 287 (638)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHh----cCCCcEEEEecchhh
Confidence 5688999999999999999999999999999999999999988888988899999999987 899999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
..+++...... +.....+|..++. +++|. ....++.||+|||+++.||++|+||||||+.+. .|+.++
T Consensus 288 ~~~r~~~~~~~--~~e~~~~L~~LL~-----~~dg~---~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 288 GRQRGAGIGGG--NDEREQTLNQLLT-----EMDGF---KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred hhcccCCCCCC--cHHHHHHHHHHHh-----hhccc---cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHH
Confidence 87664322111 1222233444443 56665 446789999999999999999999999999988 699999
Q ss_pred HHHHHHhhcCCCCCC----hHHHHHHHhcCCCCchhhHHHHHHHhhHHH
Q 011914 313 RIGVCSGIFRTDNVP----KEDIVKLVDTFPGQSIDFFGALRARVYDDE 357 (475)
Q Consensus 313 R~~Il~~~l~~~~v~----~~~l~~l~~~~~g~~i~f~gal~~~~~~~a 357 (475)
|.+||+.++....+. ...++..+.+|+|+++. .++.++...+
T Consensus 358 R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~---~lvneAal~a 403 (638)
T CHL00176 358 RLDILKVHARNKKLSPDVSLELIARRTPGFSGADLA---NLLNEAAILT 403 (638)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHH---HHHHHHHHHH
Confidence 999999998764333 34555566677777666 5554444333
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=6.2e-27 Score=242.44 Aligned_cols=190 Identities=24% Similarity=0.334 Sum_probs=155.1
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|+.+|+++|||||||||||++|+++|++++.+|+.+.++.+...+.|+....++.+|+.|. ...|+||||||+|.
T Consensus 151 ~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~il~iDEiD~ 226 (364)
T TIGR01242 151 VGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAK----EKAPSIIFIDEIDA 226 (364)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHH----hcCCcEEEhhhhhh
Confidence 46789999999999999999999999999999999999999989999999999999999887 78999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
+..++.+... .....+...+..++. ++++. ....++.||+|||+++.+|++++|+||||+.++ .|+.+
T Consensus 227 l~~~~~~~~~--~~~~~~~~~l~~ll~-----~ld~~---~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~ 296 (364)
T TIGR01242 227 IAAKRTDSGT--SGDREVQRTLMQLLA-----ELDGF---DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFE 296 (364)
T ss_pred hccccccCCC--CccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHH
Confidence 9876543211 112333444555444 45544 345689999999999999999999999999988 69999
Q ss_pred HHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 312 DRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 312 eR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
+|.+||+.++... +++.+.++..+++|+|+++. +++..+...++++
T Consensus 297 ~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~---~l~~~A~~~a~~~ 346 (364)
T TIGR01242 297 GRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLK---AICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh
Confidence 9999999887653 46777999999998888887 6666666665553
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=3e-26 Score=253.09 Aligned_cols=187 Identities=21% Similarity=0.291 Sum_probs=153.5
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+.+.|+++||+||||||||++|+++|++++.+|+.++++++...+.|..+..++.+|..|. ...||||||||+|++
T Consensus 181 ~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~----~~~P~IifIDEiD~l 256 (644)
T PRK10733 181 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK----KAAPCIIFIDEIDAV 256 (644)
T ss_pred CCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHH----hcCCcEEEehhHhhh
Confidence 4577899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCcc--cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 235 AGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 235 ~~~r~~~~~--~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
..+++.... .....+.++..|. +|+|+ ....+++||+|||+++.||++++||||||+.+. +|+.
T Consensus 257 ~~~r~~~~~g~~~~~~~~ln~lL~---------~mdg~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 257 GRQRGAGLGGGHDEREQTLNQMLV---------EMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred hhccCCCCCCCchHHHHHHHHHHH---------hhhcc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 887653211 1112233443332 56666 456789999999999999999999999999999 5999
Q ss_pred HHHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 311 EDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 311 eeR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
++|.+||+.++... +++...++..+.+|+|+++. +++..+...++++
T Consensus 325 ~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~---~l~~eAa~~a~r~ 375 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA---NLVNEAALFAARG 375 (644)
T ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHH---HHHHHHHHHHHHc
Confidence 99999999998763 45566777788888888887 6776666665553
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.4e-25 Score=247.82 Aligned_cols=187 Identities=21% Similarity=0.290 Sum_probs=156.0
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEe
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFI 228 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfI 228 (475)
.++.+|+|+|+|||||||||+.|+++|..+ .+.|++-++....++|+|+.++.++.+|++|+ +.+|+|||+
T Consensus 294 ~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~----k~qPSIIff 369 (1080)
T KOG0732|consen 294 FNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQ----KTQPSIIFF 369 (1080)
T ss_pred cccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHh----ccCceEEec
Confidence 368999999999999999999999999995 35788888899999999999999999999998 999999999
Q ss_pred ccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--
Q 011914 229 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 306 (475)
Q Consensus 229 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-- 306 (475)
||||-+++.|.. -|......+| .+|+. .|||+ ...++|.||+||||++.+||||+||||||+.+|
T Consensus 370 deIdGlapvrSs-kqEqih~SIv-STLLa--------LmdGl---dsRgqVvvigATnRpda~dpaLRRPgrfdref~f~ 436 (1080)
T KOG0732|consen 370 DEIDGLAPVRSS-KQEQIHASIV-STLLA--------LMDGL---DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFP 436 (1080)
T ss_pred cccccccccccc-hHHHhhhhHH-HHHHH--------hccCC---CCCCceEEEcccCCccccchhhcCCcccceeEeee
Confidence 999999998753 3333334444 56666 45577 778999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhcCCC--CCChH---HHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 307 APTREDRIGVCSGIFRTD--NVPKE---DIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 307 ~P~~eeR~~Il~~~l~~~--~v~~~---~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
+|+.++|.+|+..+-.+. .+... .+++.+.+|.|+++. ++|..+...++++
T Consensus 437 lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlk---aLCTeAal~~~~r 492 (1080)
T KOG0732|consen 437 LPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLK---ALCTEAALIALRR 492 (1080)
T ss_pred CCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHH---HHHHHHhhhhhcc
Confidence 699999999999777653 34433 666777788888877 7777776666554
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=1.5e-23 Score=235.33 Aligned_cols=191 Identities=24% Similarity=0.340 Sum_probs=159.6
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..++.+|+++|||||||||||++|+++|++++.+++.++++++.+++.|+.++.++.+|+.|. ...|+||||||||
T Consensus 206 ~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~----~~~p~il~iDEid 281 (733)
T TIGR01243 206 HLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAE----ENAPSIIFIDEID 281 (733)
T ss_pred hcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHH----hcCCcEEEeehhh
Confidence 346789999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
.+++++.. ..... ...+...|+++++ +. .....++||+|||+++.||++++|+|||++.+. +|+.
T Consensus 282 ~l~~~r~~-~~~~~-~~~~~~~Ll~~ld--------~l---~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 282 AIAPKREE-VTGEV-EKRVVAQLLTLMD--------GL---KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK 348 (733)
T ss_pred hhcccccC-CcchH-HHHHHHHHHHHhh--------cc---ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCH
Confidence 99987653 22222 2344556666554 22 334678899999999999999999999999888 6999
Q ss_pred HHHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHH
Q 011914 311 EDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (475)
Q Consensus 311 eeR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~ 363 (475)
++|.+||+.+.... +.+.+.+++.+++|+++++. +++..+...++++.+.
T Consensus 349 ~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~---~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 349 RARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLA---ALAKEAAMAALRRFIR 402 (733)
T ss_pred HHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHHHhh
Confidence 99999999777653 45677888999999998887 7788777777777655
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.89 E-value=1.2e-22 Score=177.72 Aligned_cols=130 Identities=25% Similarity=0.370 Sum_probs=111.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCC-ceeEEeccccccccCCCC
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLFINDLDAGAGRMGG 240 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~-p~ILfIDEiDal~~~r~~ 240 (475)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.++.++.++.+|.++. ... |+||||||+|.+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~vl~iDe~d~l~~~~~- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAK----KSAKPCVLFIDEIDKLFPKSQ- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHH----HTSTSEEEEEETGGGTSHHCS-
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccc----ccccceeeeeccchhcccccc-
Confidence 699999999999999999999999999999999999999999999999999987 666 99999999999988762
Q ss_pred CcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEecC
Q 011914 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308 (475)
Q Consensus 241 ~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~~P 308 (475)
.......+.+...|+..++ .......+++||+|||+++.++++++| +||+..+++|
T Consensus 76 -~~~~~~~~~~~~~L~~~l~----------~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 76 -PSSSSFEQRLLNQLLSLLD----------NPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp -TSSSHHHHHHHHHHHHHHH----------TTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred -cccccccccccceeeeccc----------ccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 2344456667777777666 122334679999999999999999998 8999999865
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.3e-19 Score=187.75 Aligned_cols=166 Identities=18% Similarity=0.197 Sum_probs=124.3
Q ss_pred cCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 011914 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231 (475)
Q Consensus 152 ~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEi 231 (475)
+..|..-.+|.|||||||||||+++.|+|+.++..++.+..++.. .. .. +|.+... ....+||+|+||
T Consensus 228 krvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----~n-~d-Lr~LL~~------t~~kSIivIEDI 295 (457)
T KOG0743|consen 228 KRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----LD-SD-LRHLLLA------TPNKSILLIEDI 295 (457)
T ss_pred HhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----Cc-HH-HHHHHHh------CCCCcEEEEeec
Confidence 345777779999999999999999999999999999988877654 22 22 6666653 456789999999
Q ss_pred cccccCCCCCcccchh-----hHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe
Q 011914 232 DAGAGRMGGTTQYTVN-----NQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 306 (475)
Q Consensus 232 Dal~~~r~~~~~~~~~-----~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~ 306 (475)
|+-+.-++...+...+ .+...+=|++ .+||.|..+.. ..+||+|||.++.|||||+||||||..|+
T Consensus 296 Dcs~~l~~~~~~~~~~~~~~~~~VTlSGLLN--------fiDGlwSscg~-ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 296 DCSFDLRERRKKKKENFEGDLSRVTLSGLLN--------FLDGLWSSCGD-ERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred ccccccccccccccccccCCcceeehHHhhh--------hhccccccCCC-ceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 9886532211111111 1223333444 78899997764 45589999999999999999999999999
Q ss_pred --cCCHHHHHHHHHhhcCCC--CCChHHHHHHHhcC
Q 011914 307 --APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF 338 (475)
Q Consensus 307 --~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~ 338 (475)
.-+.++-+.+++.++.-+ ..-.+++.++.++-
T Consensus 367 mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~ 402 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEET 402 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcC
Confidence 479999999999999863 34456777776664
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.4e-20 Score=183.09 Aligned_cols=153 Identities=19% Similarity=0.349 Sum_probs=124.8
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCC---------ceEEEecCccccCCCCChHHHHHHHHHHHHHHHH-hCCcee
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCC 225 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~---------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~-~~~p~I 225 (475)
+...+.||||||||||||+||+++|.++.+ .++++++..|+++|++|+.+++.++|++..++++ .+...+
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 445678999999999999999999999643 6788999999999999999999999999999998 566778
Q ss_pred EEeccccccccCCCCC---cccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCce
Q 011914 226 LFINDLDAGAGRMGGT---TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302 (475)
Q Consensus 226 LfIDEiDal~~~r~~~---~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd 302 (475)
++|||+++++..|... ++.+-.-|.|++.|.+| |.. ...++|+|++|+|-.+.||-|+.. |-|
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl---------Drl---K~~~NvliL~TSNl~~siD~AfVD--RAD 319 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL---------DRL---KRYPNVLILATSNLTDSIDVAFVD--RAD 319 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH---------HHh---ccCCCEEEEeccchHHHHHHHhhh--Hhh
Confidence 9999999997655311 11111235566555543 333 667999999999999999999999 999
Q ss_pred EEEe--cCCHHHHHHHHHhhcC
Q 011914 303 KFYW--APTREDRIGVCSGIFR 322 (475)
Q Consensus 303 ~~i~--~P~~eeR~~Il~~~l~ 322 (475)
...| .|+.+.|.+|++..+.
T Consensus 320 i~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 320 IVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred heeecCCccHHHHHHHHHHHHH
Confidence 9888 5999999999987664
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.70 E-value=4.5e-16 Score=154.31 Aligned_cols=150 Identities=18% Similarity=0.143 Sum_probs=108.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---C----CceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g----~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDE 230 (475)
.+..++|+||||||||++|+++|+.+ + .+++.++++.+.+.|+|+++..++++|++|. ++||||||
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~-------~~VL~IDE 113 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL-------GGVLFIDE 113 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc-------CCEEEEec
Confidence 44679999999999999999999874 2 3788889999999999999999999998653 68999999
Q ss_pred ccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-----CCCccccccCCCceEEE
Q 011914 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGRMEKFY 305 (475)
Q Consensus 231 iDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-----~~Ld~aLlR~GRfd~~i 305 (475)
+|.+.... +.. ..+....+|+..++ ....++.+|++++.. ..++|+|++ ||...+
T Consensus 114 ~~~L~~~~----~~~-~~~~~i~~Ll~~~e-------------~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i 173 (261)
T TIGR02881 114 AYSLARGG----EKD-FGKEAIDTLVKGME-------------DNRNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISI 173 (261)
T ss_pred hhhhccCC----ccc-hHHHHHHHHHHHHh-------------ccCCCEEEEecCCcchhHHHHhcChHHHh--ccceEE
Confidence 99986321 111 12334455655443 234555566665332 347889999 998777
Q ss_pred ec--CCHHHHHHHHHhhcCCCC--CChHHHHHH
Q 011914 306 WA--PTREDRIGVCSGIFRTDN--VPKEDIVKL 334 (475)
Q Consensus 306 ~~--P~~eeR~~Il~~~l~~~~--v~~~~l~~l 334 (475)
.+ ++.+++.+|++.++...+ ++.+.+..+
T Consensus 174 ~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l 206 (261)
T TIGR02881 174 DFPDYTVEELMEIAERMVKEREYKLTEEAKWKL 206 (261)
T ss_pred EECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence 75 588999999998887543 555544444
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.70 E-value=3e-16 Score=158.00 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=110.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CC----ceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~----~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDE 230 (475)
++..++|+||||||||++|+++|+.+ |. +++.++.+.+.+.|+|+++..++.+|++|. ++||||||
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~-------ggVLfIDE 130 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM-------GGVLFIDE 130 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc-------CCEEEEEc
Confidence 34569999999999999999999984 22 588999999999999998888888887553 68999999
Q ss_pred ccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccCCCceEEE
Q 011914 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFY 305 (475)
Q Consensus 231 iDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~GRfd~~i 305 (475)
+|.+...+.. .. -...+...|+.+++ ....++.||++++... .++|+|+| ||+..+
T Consensus 131 ~~~l~~~~~~---~~-~~~e~~~~L~~~me-------------~~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i 191 (287)
T CHL00181 131 AYYLYKPDNE---RD-YGSEAIEILLQVME-------------NQRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHV 191 (287)
T ss_pred cchhccCCCc---cc-hHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceE
Confidence 9998654321 11 12445566776554 2345677777775322 34689999 999888
Q ss_pred ec--CCHHHHHHHHHhhcCCC--CCChHHHHHH
Q 011914 306 WA--PTREDRIGVCSGIFRTD--NVPKEDIVKL 334 (475)
Q Consensus 306 ~~--P~~eeR~~Il~~~l~~~--~v~~~~l~~l 334 (475)
.+ ++.+++.+|++.++... .++.+.+..+
T Consensus 192 ~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L 224 (287)
T CHL00181 192 DFPDYTPEELLQIAKIMLEEQQYQLTPEAEKAL 224 (287)
T ss_pred EcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHH
Confidence 84 79999999999998764 3444444333
No 43
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.4e-16 Score=167.18 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=121.5
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCc
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKM 223 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s---------~~~Ge~e~~Ir~~f~~A~~~~~~~~p 223 (475)
+.|.-..++++|+||||+|||++++.||..+|..|+++|-+.+.. .|+|.....|-+...... ...|
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~----t~NP 507 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVK----TENP 507 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhC----CCCc
Confidence 344455689999999999999999999999999999999876643 367765555556666553 4444
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccC--CCCCceEEEecCCCCCCccccccCCCc
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE--ENPRVPIIVTGNDFSTLYAPLIRDGRM 301 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~--~~~~V~VI~TTN~~~~Ld~aLlR~GRf 301 (475)
+++|||||++.....+. -.+.|++++|++.|..+-.+|... ..++|++|||+|..+.||++|+. ||
T Consensus 508 -liLiDEvDKlG~g~qGD---------PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM 575 (906)
T KOG2004|consen 508 -LILIDEVDKLGSGHQGD---------PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM 575 (906)
T ss_pred -eEEeehhhhhCCCCCCC---------hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh
Confidence 88899999997432221 237899999988888888777764 46899999999999999999999 99
Q ss_pred eEEEe-cCCHHHHHHHHHhhcCC
Q 011914 302 EKFYW-APTREDRIGVCSGIFRT 323 (475)
Q Consensus 302 d~~i~-~P~~eeR~~Il~~~l~~ 323 (475)
+.+-. =...++..+|.+.|+-.
T Consensus 576 EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 576 EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred heeeccCccHHHHHHHHHHhhhh
Confidence 76544 26889999999988864
No 44
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=5.7e-16 Score=175.08 Aligned_cols=164 Identities=20% Similarity=0.281 Sum_probs=117.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc---------cCCCCChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~---------s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDE 230 (475)
.++||+||||||||++|++||+.++.+|+.++.+.+. ..|.|.....+.+.|..+. ...| ||||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~----~~~~-villDE 422 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAK----TKNP-LFLLDE 422 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhC----cCCC-EEEEec
Confidence 4799999999999999999999999999999876432 3577777777777887664 4445 899999
Q ss_pred ccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccc--cCCCCCceEEEecCCCCCCccccccCCCceEEEe-c
Q 011914 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN--QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 307 (475)
Q Consensus 231 iDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~--~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~ 307 (475)
||++.+...+ .....|++++++..+-.+-..+. ....+++++|+|||..+.|+++|++ ||+.+.+ .
T Consensus 423 idk~~~~~~~---------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~vi~~~~ 491 (775)
T TIGR00763 423 IDKIGSSFRG---------DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RMEVIELSG 491 (775)
T ss_pred hhhcCCccCC---------CHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--CeeEEecCC
Confidence 9999864221 12356777776322221111111 1234689999999999999999999 9964433 4
Q ss_pred CCHHHHHHHHHhhcC----------C--CCCChHHHHHHHhcCC
Q 011914 308 PTREDRIGVCSGIFR----------T--DNVPKEDIVKLVDTFP 339 (475)
Q Consensus 308 P~~eeR~~Il~~~l~----------~--~~v~~~~l~~l~~~~~ 339 (475)
|+.+++.+|++.++. . ..++.+.+..++..|.
T Consensus 492 ~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 492 YTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 789999999987652 1 1356667777777665
No 45
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.7e-16 Score=167.13 Aligned_cols=164 Identities=20% Similarity=0.320 Sum_probs=130.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s---------~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDE 230 (475)
.+++|+||||+|||+|++.||+.+|..|+.++.+.+.+ .|+|.-...|-+...+|. .. ..+++|||
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~----~~-NPv~LLDE 425 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAG----VK-NPVFLLDE 425 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhC----Cc-CCeEEeec
Confidence 68999999999999999999999999999999876654 377776666667777773 44 44889999
Q ss_pred ccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccC--CCCCceEEEecCCCCCCccccccCCCceEEEe-c
Q 011914 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 307 (475)
Q Consensus 231 iDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~--~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~ 307 (475)
||++.....+.- .+.|++.+|++.|..+..+|... ..++|++|+|+|..++||.||+. ||+.+-. =
T Consensus 426 IDKm~ss~rGDP---------aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEiI~lsg 494 (782)
T COG0466 426 IDKMGSSFRGDP---------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEVIRLSG 494 (782)
T ss_pred hhhccCCCCCCh---------HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceeeeeecC
Confidence 999987644322 37899999999999988888764 45899999999999999999999 9976655 4
Q ss_pred CCHHHHHHHHHhhcCC-----C-------CCChHHHHHHHhcCC
Q 011914 308 PTREDRIGVCSGIFRT-----D-------NVPKEDIVKLVDTFP 339 (475)
Q Consensus 308 P~~eeR~~Il~~~l~~-----~-------~v~~~~l~~l~~~~~ 339 (475)
.+.++..+|-+.|+-. . .++.+.+..+.+.|+
T Consensus 495 Yt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YT 538 (782)
T COG0466 495 YTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYT 538 (782)
T ss_pred CChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHh
Confidence 8999999999977753 2 234556666666653
No 46
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.9e-16 Score=161.69 Aligned_cols=172 Identities=17% Similarity=0.254 Sum_probs=124.2
Q ss_pred cCCCCCChhhHHHHHHHHHHhhhcCC-CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHH
Q 011914 129 LDGLYIAPAFMDKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207 (475)
Q Consensus 129 ~~~~~i~~~~~d~~~~~i~k~~l~~~-~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~I 207 (475)
+++..++|.+-.+ +.+++..--... +..+-+.||||||||||||+.|+.||...|+.+-.+.++++. ..-.+....|
T Consensus 354 l~~ViL~psLe~R-ie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTki 431 (630)
T KOG0742|consen 354 LEGVILHPSLEKR-IEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKI 431 (630)
T ss_pred cCCeecCHHHHHH-HHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHH
Confidence 4455566665433 334433222222 223448899999999999999999999999999999988764 3333445789
Q ss_pred HHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhH-HHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecC
Q 011914 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ-MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN 286 (475)
Q Consensus 208 r~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~-~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN 286 (475)
+++|+.|. +..+.-+|||||+|+++-.|.. +..+...+ .++.+|.. . -.....+.++++||
T Consensus 432 H~lFDWak---kS~rGLllFIDEADAFLceRnk-tymSEaqRsaLNAlLfR---------T-----GdqSrdivLvlAtN 493 (630)
T KOG0742|consen 432 HKLFDWAK---KSRRGLLLFIDEADAFLCERNK-TYMSEAQRSALNALLFR---------T-----GDQSRDIVLVLATN 493 (630)
T ss_pred HHHHHHHh---hcccceEEEehhhHHHHHHhch-hhhcHHHHHHHHHHHHH---------h-----cccccceEEEeccC
Confidence 99999986 3455679999999999877663 34343333 34444432 1 13356777888999
Q ss_pred CCCCCccccccCCCceEEEe--cCCHHHHHHHHHhhcC
Q 011914 287 DFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR 322 (475)
Q Consensus 287 ~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~ 322 (475)
+|..+|.++-. |+|..+. +|..++|..||..||.
T Consensus 494 rpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742|consen 494 RPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred CccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHH
Confidence 99999999999 9999998 6999999999987665
No 47
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.9e-16 Score=166.11 Aligned_cols=191 Identities=18% Similarity=0.197 Sum_probs=148.1
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEi 231 (475)
+-.+..|||+||+|||||.|+++++++. -+++..++|+++...-.....+.++.+|.+|. +++|+||++|++
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~----~~~PSiIvLDdl 503 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEAL----WYAPSIIVLDDL 503 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHH----hhCCcEEEEcch
Confidence 3445679999999999999999999995 35777899998875544455667777787777 999999999999
Q ss_pred ccccc-CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cC
Q 011914 232 DAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 308 (475)
Q Consensus 232 Dal~~-~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P 308 (475)
|.+++ ....+++..+..+++..+|.++.+ .....+..+.+|+|.+..+.|++-|..+++|+..+. .|
T Consensus 504 d~l~~~s~~e~~q~~~~~~rla~flnqvi~----------~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 504 DCLASASSNENGQDGVVSERLAAFLNQVIK----------IYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred hhhhccCcccCCcchHHHHHHHHHHHHHHH----------HHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 99998 334456777777888888877666 223556678999999999999999999999999888 48
Q ss_pred CHHHHHHHHHhhcCCCC--C---ChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHH
Q 011914 309 TREDRIGVCSGIFRTDN--V---PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (475)
Q Consensus 309 ~~eeR~~Il~~~l~~~~--v---~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~ 363 (475)
+..+|.+||+.++.+.. . +++-+...+++|...|+. -+..|+..+++++.+.
T Consensus 574 ~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~---ifVeRai~~a~leris 630 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLV---IFVERAIHEAFLERIS 630 (952)
T ss_pred chhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHH---HHHHHHHHHHHHHHhc
Confidence 99999999998887632 1 223456677888888776 4556666666544433
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.67 E-value=1.6e-15 Score=152.54 Aligned_cols=151 Identities=12% Similarity=0.114 Sum_probs=111.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhC-------CceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg-------~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDE 230 (475)
+..+++|+||||||||++|+++|+.+. -+++.++++++.+.+.|+++..++.+|++|. +++|||||
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~-------~gvL~iDE 129 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM-------GGVLFIDE 129 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc-------CcEEEEec
Confidence 346899999999999999999998852 2688999989988999998888888888653 68999999
Q ss_pred ccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC--CC---CCccccccCCCceEEE
Q 011914 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND--FS---TLYAPLIRDGRMEKFY 305 (475)
Q Consensus 231 iDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~--~~---~Ld~aLlR~GRfd~~i 305 (475)
++.+.+.+.. ..-...+...|+++++ ....++.||++++. .+ .++|+|.+ ||+..+
T Consensus 130 i~~L~~~~~~----~~~~~~~~~~Ll~~le-------------~~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i 190 (284)
T TIGR02880 130 AYYLYRPDNE----RDYGQEAIEILLQVME-------------NQRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHV 190 (284)
T ss_pred hhhhccCCCc----cchHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEE
Confidence 9998654321 1112345566666555 23466778887653 22 24799999 999887
Q ss_pred ec--CCHHHHHHHHHhhcCCC--CCChHHHHHH
Q 011914 306 WA--PTREDRIGVCSGIFRTD--NVPKEDIVKL 334 (475)
Q Consensus 306 ~~--P~~eeR~~Il~~~l~~~--~v~~~~l~~l 334 (475)
.+ ++.+++.+|++.++... .++.+.+..+
T Consensus 191 ~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L 223 (284)
T TIGR02880 191 DFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAF 223 (284)
T ss_pred EeCCcCHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 74 68999999999998764 3555544443
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=8.9e-15 Score=158.89 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=139.2
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 235 (475)
++....+||+|+||||||++++++|.++|++++.+++.++.+...+.++..+...|.+|+ ...|+||||-++|.+.
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~----~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRAR----RCSPAVLFLRNLDVLG 503 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHh----hcCceEEEEeccceee
Confidence 445568999999999999999999999999999999999999999999999999999998 9999999999999987
Q ss_pred cCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEecCCHHHHHH
Q 011914 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 315 (475)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~~P~~eeR~~ 315 (475)
....+ .+..++.+.+..++. .+ .......+++||+||+..+.|++.+++..+|+..+..|+.++|.+
T Consensus 504 id~dg-----ged~rl~~~i~~~ls------~e--~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~ 570 (953)
T KOG0736|consen 504 IDQDG-----GEDARLLKVIRHLLS------NE--DFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLE 570 (953)
T ss_pred ecCCC-----chhHHHHHHHHHHHh------cc--cccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHH
Confidence 54332 223333333333222 11 112456889999999999999999999777777777899999999
Q ss_pred HHHhhcCCCCCChH----HHHHHHhcCCCCchhhHHHHHHHh
Q 011914 316 VCSGIFRTDNVPKE----DIVKLVDTFPGQSIDFFGALRARV 353 (475)
Q Consensus 316 Il~~~l~~~~v~~~----~l~~l~~~~~g~~i~f~gal~~~~ 353 (475)
||+.++....++.+ .++..+.+|+-.++. ++..+.
T Consensus 571 iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~---~l~~~~ 609 (953)
T KOG0736|consen 571 ILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLE---ALVAHS 609 (953)
T ss_pred HHHHHHhccccchHHHHHHHHHhcCCCCHHHHH---HHhcCc
Confidence 99999987666644 555556666655555 555544
No 50
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=7.7e-15 Score=165.03 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=116.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc--cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 225 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~--s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~I 225 (475)
....++|+||||||||++|+++|+.+ +..++.++.+.+. .+|.|+.++.++.+|+++. ...|+|
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~----~~~~~I 277 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIE----KEPNAI 277 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHh----ccCCeE
Confidence 34578999999999999999999997 7788889888876 4789999999999999886 677999
Q ss_pred EEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-----CCCccccccCCC
Q 011914 226 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGR 300 (475)
Q Consensus 226 LfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-----~~Ld~aLlR~GR 300 (475)
|||||+|.+++.... ...+. .+...|...+. ...+.+|++||.. ..+|++|.| |
T Consensus 278 LfiDEih~l~~~g~~-~~~~~---~~~~~L~~~l~---------------~g~i~~IgaTt~~e~~~~~~~d~al~r--R 336 (731)
T TIGR02639 278 LFIDEIHTIVGAGAT-SGGSM---DASNLLKPALS---------------SGKLRCIGSTTYEEYKNHFEKDRALSR--R 336 (731)
T ss_pred EEEecHHHHhccCCC-CCccH---HHHHHHHHHHh---------------CCCeEEEEecCHHHHHHHhhhhHHHHH--h
Confidence 999999999875321 11111 12333433222 4668899988863 467999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhcCC------CCCChHH---HHHHHhcCCCC
Q 011914 301 MEKFYW-APTREDRIGVCSGIFRT------DNVPKED---IVKLVDTFPGQ 341 (475)
Q Consensus 301 fd~~i~-~P~~eeR~~Il~~~l~~------~~v~~~~---l~~l~~~~~g~ 341 (475)
|+.+.. .|+.+++.+|++.+... -.++.+. +..++.+|-+.
T Consensus 337 f~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 337 FQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 986544 69999999999955432 2355554 44556665433
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.56 E-value=6e-14 Score=135.46 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=94.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
.....+|||||||+|||+||+.||++++.+|..++++.+.. . .-+..++.. -....|||||||+.+-.
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-----~-~dl~~il~~------l~~~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-----A-GDLAAILTN------LKEGDILFIDEIHRLNK 115 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-----C-HHHHHHHHT--------TT-EEEECTCCC--H
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-----H-HHHHHHHHh------cCCCcEEEEechhhccH
Confidence 44578999999999999999999999999999998875531 1 222233331 24567999999996632
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCc-c----ccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-Y----NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~-~----~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
.+...|+..+++-...-+=|. . ..-..++--+|+||++...|.++|+. ||-.... ..+
T Consensus 116 -------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~ 180 (233)
T PF05496_consen 116 -------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYS 180 (233)
T ss_dssp -------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----T
T ss_pred -------------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCC
Confidence 344666665553322111111 0 00123456789999999999999999 8877655 689
Q ss_pred HHHHHHHHHhhcCCCC--CChHHHHHHHhc
Q 011914 310 REDRIGVCSGIFRTDN--VPKEDIVKLVDT 337 (475)
Q Consensus 310 ~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 337 (475)
.++..+|++......+ ++.+...+++..
T Consensus 181 ~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~r 210 (233)
T PF05496_consen 181 EEELAKIVKRSARILNIEIDEDAAEEIARR 210 (233)
T ss_dssp HHHHHHHHHHCCHCTT-EE-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHh
Confidence 9999999986665544 445555555555
No 52
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.56 E-value=1.2e-13 Score=155.83 Aligned_cols=163 Identities=20% Similarity=0.296 Sum_probs=119.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s---------~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDE 230 (475)
..++|+||||||||++++.+|+.++.+++.++.+.... .|.|.....+.+.+..+ .....||||||
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~-----~~~~~villDE 424 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV-----GVKNPLFLLDE 424 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc-----CCCCCEEEEEC
Confidence 46999999999999999999999999999998765432 35555555555555544 22345899999
Q ss_pred ccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcccc--CCCCCceEEEecCCCCCCccccccCCCceEEEe-c
Q 011914 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 307 (475)
Q Consensus 231 iDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~--~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~ 307 (475)
+|++.....+ .....|++++++.++..+...|.. ...+++++|+|+|.. .|++||+. ||+.+-+ -
T Consensus 425 idk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~ii~~~~ 492 (784)
T PRK10787 425 IDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RMEVIRLSG 492 (784)
T ss_pred hhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--ceeeeecCC
Confidence 9998754221 123678888886666665554443 356899999999998 59999999 9976555 4
Q ss_pred CCHHHHHHHHHhhcCC------------CCCChHHHHHHHhcCC
Q 011914 308 PTREDRIGVCSGIFRT------------DNVPKEDIVKLVDTFP 339 (475)
Q Consensus 308 P~~eeR~~Il~~~l~~------------~~v~~~~l~~l~~~~~ 339 (475)
++.++..+|++.++.. -.++.+.+..++++|+
T Consensus 493 ~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 493 YTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 7999999999877741 1345566777777664
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.55 E-value=1.8e-13 Score=140.50 Aligned_cols=126 Identities=21% Similarity=0.203 Sum_probs=99.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 237 (475)
....++||||||||||++|++||...+..|..+|+..- ..+.||+++++|+.....++..|||||||+.+-..
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 44679999999999999999999999999999998643 25789999999986666777899999999965322
Q ss_pred CCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEec--CCCCCCccccccCCCceEEEe-cCCHHHHH
Q 011914 238 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRI 314 (475)
Q Consensus 238 r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT--N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~ 314 (475)
| +..|+-.++ ...+++|+|| |..-.|.+||++ |.-.+.. ..+.++..
T Consensus 120 -----Q--------QD~lLp~vE---------------~G~iilIGATTENPsF~ln~ALlS--R~~vf~lk~L~~~di~ 169 (436)
T COG2256 120 -----Q--------QDALLPHVE---------------NGTIILIGATTENPSFELNPALLS--RARVFELKPLSSEDIK 169 (436)
T ss_pred -----h--------hhhhhhhhc---------------CCeEEEEeccCCCCCeeecHHHhh--hhheeeeecCCHHHHH
Confidence 2 245555333 5667788744 777789999999 8766666 56889988
Q ss_pred HHHHhh
Q 011914 315 GVCSGI 320 (475)
Q Consensus 315 ~Il~~~ 320 (475)
++++.-
T Consensus 170 ~~l~ra 175 (436)
T COG2256 170 KLLKRA 175 (436)
T ss_pred HHHHHH
Confidence 888873
No 54
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-13 Score=147.95 Aligned_cols=185 Identities=22% Similarity=0.272 Sum_probs=150.4
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
++.+|++++++||||||||++++++|.+ +..++.++.....+++.|+.+..++.+|..+. ...|+++++||+|.+
T Consensus 14 ~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~ii~~d~~~~~ 88 (494)
T COG0464 14 GIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAE----KLAPSIIFIDEIDAL 88 (494)
T ss_pred CCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHH----HhCCCeEeechhhhc
Confidence 6788999999999999999999999999 77778889999999999999999999999998 888999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
.+++.. ....+..+.+ ..+..+++ +. .... +.+++.||++..++++++++|||++.+. .|+...
T Consensus 89 ~~~~~~-~~~~~~~~v~-~~l~~~~d--------~~---~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (494)
T COG0464 89 APKRSS-DQGEVERRVV-AQLLALMD--------GL---KRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAG 154 (494)
T ss_pred ccCccc-cccchhhHHH-HHHHHhcc--------cc---cCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHH
Confidence 998775 3333444444 45555333 33 2345 8888899999999999999999999999 599999
Q ss_pred HHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHH
Q 011914 313 RIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361 (475)
Q Consensus 313 R~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~ 361 (475)
|.+|+...... .+.+.+.++..+.+|.++++. +++..+...++++.
T Consensus 155 ~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~l~~~~~~~~~~r~ 204 (494)
T COG0464 155 RLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLG---ALAKEAALRELRRA 204 (494)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHH---HHHHHHHHHHHHhh
Confidence 99998865543 345677888888888888777 66666666666654
No 55
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=5.9e-14 Score=157.45 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=104.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc--cCCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~--s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~IL 226 (475)
+..+||+||||||||++|+.+|... +..++.++.+.+. .+|.|+.+..++.+|+.+. ...++||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~----~~~~~IL 282 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE----QDTNSIL 282 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHH----hcCCCEE
Confidence 4557899999999999999999874 4566666666555 4678899999999998776 6789999
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccCCCc
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 301 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~GRf 301 (475)
||||||.+++.+.. ... ...+...|..++. ..++.+|++||..+ .+|++|.| ||
T Consensus 283 fIDEIh~L~g~g~~-~~g---~~d~~nlLkp~L~---------------~g~i~vIgATt~~E~~~~~~~D~AL~r--RF 341 (758)
T PRK11034 283 FIDEIHTIIGAGAA-SGG---QVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--RF 341 (758)
T ss_pred EeccHHHHhccCCC-CCc---HHHHHHHHHHHHh---------------CCCeEEEecCChHHHHHHhhccHHHHh--hC
Confidence 99999999876431 111 1223334444333 46788999998754 57999999 99
Q ss_pred eEEEe-cCCHHHHHHHHHhhcC
Q 011914 302 EKFYW-APTREDRIGVCSGIFR 322 (475)
Q Consensus 302 d~~i~-~P~~eeR~~Il~~~l~ 322 (475)
+.+.. .|+.+++..||+.+..
T Consensus 342 q~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 342 QKIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred cEEEeCCCCHHHHHHHHHHHHH
Confidence 86544 6999999999996543
No 56
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.48 E-value=2.6e-13 Score=154.52 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=112.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCcccc--CCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~s--~~~Ge~e~~Ir~~f~~A~~~~~~~~p~IL 226 (475)
...++|+||||||||++|+.+|+.+ +..++.++.+.+.. .+.|+.+..++.+++++. +...++||
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~---~~~~~~IL 284 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVK---ASPQPIIL 284 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHH---hcCCCeEE
Confidence 3467899999999999999999986 24577777777653 688999999999999875 13578999
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-----CCCccccccCCCc
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGRM 301 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-----~~Ld~aLlR~GRf 301 (475)
|||||+.+.+.++...+.+ +...|...+. ...+.+|+||+.. -.+|++|.| ||
T Consensus 285 fIDEih~l~~~g~~~~~~d-----~~n~Lkp~l~---------------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf 342 (852)
T TIGR03345 285 FIDEAHTLIGAGGQAGQGD-----AANLLKPALA---------------RGELRTIAATTWAEYKKYFEKDPALTR--RF 342 (852)
T ss_pred EEeChHHhccCCCcccccc-----HHHHhhHHhh---------------CCCeEEEEecCHHHHhhhhhccHHHHH--hC
Confidence 9999999987643222211 2223333222 4678899988653 458999999 99
Q ss_pred eEEEe-cCCHHHHHHHHHhhcCC----CC--CChH---HHHHHHhcCCCC
Q 011914 302 EKFYW-APTREDRIGVCSGIFRT----DN--VPKE---DIVKLVDTFPGQ 341 (475)
Q Consensus 302 d~~i~-~P~~eeR~~Il~~~l~~----~~--v~~~---~l~~l~~~~~g~ 341 (475)
..+.. .|+.+++..||+.+... .+ ++.+ .++.++++|...
T Consensus 343 ~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~ 392 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPG 392 (852)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccccc
Confidence 76544 69999999997654432 23 3444 455666665433
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.46 E-value=2.2e-13 Score=155.39 Aligned_cols=139 Identities=20% Similarity=0.230 Sum_probs=106.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc--cCCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~--s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~IL 226 (475)
...++|+||||||||++|+.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|++.. +...++||
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~---~~~~~~IL 275 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNVIL 275 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHH---HcCCCeEE
Confidence 3568899999999999999999997 7788888888765 4688999999999998753 14678999
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccCCCc
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 301 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~GRf 301 (475)
||||++.+.+.... ....+ ....|...+ ....+.+|+||+..+ .+|++|.| ||
T Consensus 276 fIDEih~l~~~~~~--~~~~d---~~~~lkp~l---------------~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf 333 (857)
T PRK10865 276 FIDELHTMVGAGKA--DGAMD---AGNMLKPAL---------------ARGELHCVGATTLDEYRQYIEKDAALER--RF 333 (857)
T ss_pred EEecHHHhccCCCC--ccchh---HHHHhcchh---------------hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hC
Confidence 99999999875432 11111 222232211 246788999887765 58999999 99
Q ss_pred eEEEe-cCCHHHHHHHHHhhcC
Q 011914 302 EKFYW-APTREDRIGVCSGIFR 322 (475)
Q Consensus 302 d~~i~-~P~~eeR~~Il~~~l~ 322 (475)
+.++. .|+.+++..|++.+..
T Consensus 334 ~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 334 QKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred CEEEeCCCCHHHHHHHHHHHhh
Confidence 87655 6999999999987654
No 58
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.45 E-value=8.6e-13 Score=135.05 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=103.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
.++..++||||||||||++|+++|++++..+..++++.+.. ...+..++.. ...++||||||||.+..
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~------l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 116 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHh------cccCCEEEEecHhhcch
Confidence 45678999999999999999999999999888777654321 2223333332 34588999999998743
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCC-CcccCCCccc----cCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNP-TNVQLPGMYN----QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~-~~v~ldg~~~----~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
.. ...|...+++. ..+.++.... ....+++.+|++||++..++++|++ ||...+. .|+
T Consensus 117 ~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~ 181 (328)
T PRK00080 117 VV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYT 181 (328)
T ss_pred HH-------------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCC
Confidence 21 11122222210 0011111000 0122457789999999999999988 8876655 589
Q ss_pred HHHHHHHHHhhcCCC--CCChHHHHHHHhcCCCC
Q 011914 310 REDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQ 341 (475)
Q Consensus 310 ~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~~g~ 341 (475)
.+++.+|++...... .++.+.+..++..+.|.
T Consensus 182 ~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~ 215 (328)
T PRK00080 182 VEELEKIVKRSARILGVEIDEEGALEIARRSRGT 215 (328)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC
Confidence 999999999777654 45555666666655443
No 59
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.44 E-value=1e-12 Score=150.09 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=113.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc--cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 225 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~--s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~I 225 (475)
....++|+||||||||++++.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|+++. +...++|
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~---~~~~~~I 269 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVT---KSEGQII 269 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHH---hcCCCeE
Confidence 34567899999999999999999985 6778888887765 4688999999999999764 1346999
Q ss_pred EEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-----CCCccccccCCC
Q 011914 226 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGR 300 (475)
Q Consensus 226 LfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-----~~Ld~aLlR~GR 300 (475)
||||||+.+.+.... +.. ..+...|..++ ....+.+|++|+.. -.+|+++.| |
T Consensus 270 LfIDEih~l~~~g~~--~~~---~d~~~~Lk~~l---------------~~g~i~~IgaTt~~e~r~~~~~d~al~r--R 327 (852)
T TIGR03346 270 LFIDELHTLVGAGKA--EGA---MDAGNMLKPAL---------------ARGELHCIGATTLDEYRKYIEKDAALER--R 327 (852)
T ss_pred EEeccHHHhhcCCCC--cch---hHHHHHhchhh---------------hcCceEEEEeCcHHHHHHHhhcCHHHHh--c
Confidence 999999999864321 111 11223332211 24678899988766 358999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhcCC----CC--CChH---HHHHHHhcCCCC
Q 011914 301 MEKFYW-APTREDRIGVCSGIFRT----DN--VPKE---DIVKLVDTFPGQ 341 (475)
Q Consensus 301 fd~~i~-~P~~eeR~~Il~~~l~~----~~--v~~~---~l~~l~~~~~g~ 341 (475)
|..++. .|+.+++..|++.+... .+ +..+ ..+.++.+|-..
T Consensus 328 f~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~ 378 (852)
T TIGR03346 328 FQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD 378 (852)
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence 987655 69999999999866432 22 3333 445566666443
No 60
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.44 E-value=4.7e-13 Score=152.43 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=116.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 224 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~--s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ 224 (475)
+.+..++|+||||||||++|+.+|..+ +..++.++.+.+. .+|.|+.+..++.+++++. ...++
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~----~~~~~ 273 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQ----ENNNI 273 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHH----hcCCe
Confidence 445678999999999999999999986 4688899988776 4789999999999999886 67899
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccCC
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDG 299 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~G 299 (475)
||||||++.+++.... .... .+...|...+. ...+.+|++|+... ..|++|.|
T Consensus 274 ILfiDEih~l~~~g~~--~g~~---~~a~lLkp~l~---------------rg~l~~IgaTt~~ey~~~ie~D~aL~r-- 331 (821)
T CHL00095 274 ILVIDEVHTLIGAGAA--EGAI---DAANILKPALA---------------RGELQCIGATTLDEYRKHIEKDPALER-- 331 (821)
T ss_pred EEEEecHHHHhcCCCC--CCcc---cHHHHhHHHHh---------------CCCcEEEEeCCHHHHHHHHhcCHHHHh--
Confidence 9999999999875431 1111 12233333222 46788999887653 57899999
Q ss_pred CceEEEe-cCCHHHHHHHHHhhcC------CCCCChH---HHHHHHhcCCCC
Q 011914 300 RMEKFYW-APTREDRIGVCSGIFR------TDNVPKE---DIVKLVDTFPGQ 341 (475)
Q Consensus 300 Rfd~~i~-~P~~eeR~~Il~~~l~------~~~v~~~---~l~~l~~~~~g~ 341 (475)
||+.+.. .|+.++...|++.... ...++.+ .+..++.+|-+.
T Consensus 332 Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~ 383 (821)
T CHL00095 332 RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIAD 383 (821)
T ss_pred cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Confidence 9987544 6999999999874432 2235555 455667666543
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1.8e-12 Score=143.25 Aligned_cols=159 Identities=12% Similarity=0.152 Sum_probs=106.6
Q ss_pred HHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCC
Q 011914 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAG 201 (475)
Q Consensus 146 i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~G 201 (475)
.+++++.. -+.+..+||+||+|||||++|+++|+.+++. ++.++... .
T Consensus 27 ~L~~aL~~--gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas------~ 98 (830)
T PRK07003 27 ALTHALDG--GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS------N 98 (830)
T ss_pred HHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc------c
Confidence 34444432 2567889999999999999999999998642 33333221 1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceE
Q 011914 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281 (475)
Q Consensus 202 e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~V 281 (475)
.....||++.+.+...-......|+||||+|.+... . .+.|++.++ +...++.+
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~------------A-~NALLKtLE-------------EPP~~v~F 152 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH------------A-FNAMLKTLE-------------EPPPHVKF 152 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH------------H-HHHHHHHHH-------------hcCCCeEE
Confidence 123456666665431111355689999999977321 1 234555444 45678899
Q ss_pred EEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhcCCC
Q 011914 282 IVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTFPG 340 (475)
Q Consensus 282 I~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~~~g 340 (475)
|++||+++.|.+.|++ |+..+-+ .++.++..+.|+.++..+++ +.+.+..++....|
T Consensus 153 ILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G 212 (830)
T PRK07003 153 ILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG 212 (830)
T ss_pred EEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999999999999 9977666 57888999999988876654 45555554444333
No 62
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.43 E-value=2.1e-12 Score=135.02 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=118.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc-cCCCC-ChHHHHHHHHHHHHHHHH---------------
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAG-EPAKLIRQRYREAADIIK--------------- 219 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~-s~~~G-e~e~~Ir~~f~~A~~~~~--------------- 219 (475)
-.|+++||+||||||||++|+++|+.++.+|+.+++..+. .+|+| +.+..++.+|..|...++
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~a 124 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELA 124 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3578999999999999999999999999999999999876 48999 678889998888721000
Q ss_pred --------------------------------------------------------------------------------
Q 011914 220 -------------------------------------------------------------------------------- 219 (475)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (475)
T Consensus 125 e~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (441)
T TIGR00390 125 EERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNL 204 (441)
T ss_pred HHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhh
Confidence
Q ss_pred ----------------------------------------hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhh
Q 011914 220 ----------------------------------------KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 259 (475)
Q Consensus 220 ----------------------------------------~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~ 259 (475)
..+..||||||||+++.+.. ....++....|++.|+.|+
T Consensus 205 ~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkil 283 (441)
T TIGR00390 205 GGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIV 283 (441)
T ss_pred cCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhccccccc
Confidence 12445999999999997653 2334666778889999887
Q ss_pred cCCCcccCCCccccCCCCCceEEEecC----CCCCCccccccCCCceEEEec--CCHHHHHHHHH
Q 011914 260 DNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS 318 (475)
Q Consensus 260 d~~~~v~ldg~~~~~~~~~V~VI~TTN----~~~~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~ 318 (475)
. .+.|... +......++++|+++- .|+.|=|.|.= ||.....+ ++.++-..||.
T Consensus 284 E-Gt~v~~k--~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 284 E-GSTVNTK--YGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQALTTDDFERILT 343 (441)
T ss_pred c-Cceeeec--ceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHhc
Confidence 6 3333332 2345678999999763 45556666654 99998884 79999888873
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3e-12 Score=136.25 Aligned_cols=145 Identities=14% Similarity=0.230 Sum_probs=98.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+|||||||||||++|+.+|+.++.. ++.+++.. ......+|++.+
T Consensus 38 ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e 111 (484)
T PRK14956 38 KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRD 111 (484)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHH
Confidence 457789999999999999999999998752 33333211 011345666655
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+......+...|+||||+|.+... ....|+..++ ++..++.+|++|+.++.|.
T Consensus 112 ~l~~~p~~g~~KV~IIDEah~Ls~~-------------A~NALLKtLE-------------EPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 112 NVKFAPMGGKYKVYIIDEVHMLTDQ-------------SFNALLKTLE-------------EPPAHIVFILATTEFHKIP 165 (484)
T ss_pred HHHhhhhcCCCEEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCceEEEeecCChhhcc
Confidence 5432222456789999999977321 2244455343 5567888999999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHH
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLV 335 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~ 335 (475)
+++++ |+..+.+ .++.++..+.++.++...++ +.+.+..++
T Consensus 166 ~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia 209 (484)
T PRK14956 166 ETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA 209 (484)
T ss_pred HHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999 9877666 56777777888877765544 444444443
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=1.5e-12 Score=140.19 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=106.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH-h-CCceeEEecccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K-GKMCCLFINDLDAG 234 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~-~-~~p~ILfIDEiDal 234 (475)
.+++.+|||||||||||++|+++|++++..++.++++...+ ...++.+...+..... . ..+.||+|||+|.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 34789999999999999999999999999999999875431 2345555444431111 1 25789999999988
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcc-ccccCCCceEEEe-cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYW-APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~-aLlR~GRfd~~i~-~P~~ee 312 (475)
..... +.....|+.+++ ..+.+||+++|++..+.+ .|++ |+..+.+ .|+.++
T Consensus 111 ~~~~d---------~~~~~aL~~~l~---------------~~~~~iIli~n~~~~~~~k~Lrs--r~~~I~f~~~~~~~ 164 (482)
T PRK04195 111 HGNED---------RGGARAILELIK---------------KAKQPIILTANDPYDPSLRELRN--ACLMIEFKRLSTRS 164 (482)
T ss_pred ccccc---------hhHHHHHHHHHH---------------cCCCCEEEeccCccccchhhHhc--cceEEEecCCCHHH
Confidence 65311 111234444443 345679999999998887 6666 6555444 689999
Q ss_pred HHHHHHhhcCCCC--CChHHHHHHHhcCC
Q 011914 313 RIGVCSGIFRTDN--VPKEDIVKLVDTFP 339 (475)
Q Consensus 313 R~~Il~~~l~~~~--v~~~~l~~l~~~~~ 339 (475)
+..+++.++...+ ++.+.+..++....
T Consensus 165 i~~~L~~i~~~egi~i~~eaL~~Ia~~s~ 193 (482)
T PRK04195 165 IVPVLKRICRKEGIECDDEALKEIAERSG 193 (482)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 9999998886654 56667777776643
No 65
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.42 E-value=2.9e-12 Score=133.97 Aligned_cols=155 Identities=21% Similarity=0.255 Sum_probs=118.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc-CCCC-ChHHHHHHHHHHHHHHH-----------------
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAG-EPAKLIRQRYREAADII----------------- 218 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s-~~~G-e~e~~Ir~~f~~A~~~~----------------- 218 (475)
.|.++||+||||||||++|+++|+.++.+|+.++++++.. +|+| +.+..++.+|..|..+.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e 128 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAE 128 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999988774 7999 66888999988882000
Q ss_pred --------------------------------------------------------------------------------
Q 011914 219 -------------------------------------------------------------------------------- 218 (475)
Q Consensus 219 -------------------------------------------------------------------------------- 218 (475)
T Consensus 129 ~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (443)
T PRK05201 129 ERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGP 208 (443)
T ss_pred HHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCC
Confidence
Q ss_pred ------------------------------------H-hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcC
Q 011914 219 ------------------------------------K-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 261 (475)
Q Consensus 219 ------------------------------------~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~ 261 (475)
+ ..+..||||||||+++.+.++ ...++....|++.|+.|+.
T Consensus 209 ~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~E- 286 (443)
T PRK05201 209 KKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVE- 286 (443)
T ss_pred CCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccc-
Confidence 0 124459999999999977443 3346667789999998876
Q ss_pred CCcccCCCccccCCCCCceEEEec----CCCCCCccccccCCCceEEEec--CCHHHHHHHHH
Q 011914 262 PTNVQLPGMYNQEENPRVPIIVTG----NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS 318 (475)
Q Consensus 262 ~~~v~ldg~~~~~~~~~V~VI~TT----N~~~~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~ 318 (475)
.+.|.+. +......++++||+. ..|+.|-|.|.- ||.....+ ++.++-..||.
T Consensus 287 G~~v~~k--~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 287 GSTVSTK--YGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred cceeeec--ceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHhc
Confidence 3333332 233567899999976 346667777765 99998884 79999888874
No 66
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.41 E-value=3.6e-12 Score=129.09 Aligned_cols=150 Identities=17% Similarity=0.267 Sum_probs=101.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGA 235 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~-~~~p~ILfIDEiDal~ 235 (475)
+.|..+||+||||+|||++|+++|++++.+++.++++. . . ...++........... ...+.||+|||+|.+.
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-----~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~ 113 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-----R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG 113 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-----c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc
Confidence 46788888999999999999999999999999998875 1 1 2233332222111111 2468899999999762
Q ss_pred cCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHH
Q 011914 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRI 314 (475)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~ 314 (475)
.. .....|..+++ ....++.+|+|||.++.+++++++ ||..+.+ .|+.+++.
T Consensus 114 ~~------------~~~~~L~~~le-------------~~~~~~~~Ilt~n~~~~l~~~l~s--R~~~i~~~~p~~~~~~ 166 (316)
T PHA02544 114 LA------------DAQRHLRSFME-------------AYSKNCSFIITANNKNGIIEPLRS--RCRVIDFGVPTKEEQI 166 (316)
T ss_pred CH------------HHHHHHHHHHH-------------hcCCCceEEEEcCChhhchHHHHh--hceEEEeCCCCHHHHH
Confidence 11 12234444333 334667899999999999999999 8876666 79999998
Q ss_pred HHHHhhcC-------C--CCCChHHHHHHHhcCCC
Q 011914 315 GVCSGIFR-------T--DNVPKEDIVKLVDTFPG 340 (475)
Q Consensus 315 ~Il~~~l~-------~--~~v~~~~l~~l~~~~~g 340 (475)
+|++.++. . ..++.+.+..++....+
T Consensus 167 ~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 167 EMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 87664322 2 24555566666665443
No 67
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.40 E-value=3.9e-12 Score=134.08 Aligned_cols=102 Identities=18% Similarity=0.274 Sum_probs=76.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc-cCCCCChH-HHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPA-KLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~-s~~~Ge~e-~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
...+||+||||||||++|+++|+.++.+|+.++++.+. .+|+|+.. ..+..++..+...++...++||||||||++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 36799999999999999999999999999999998875 47888754 44555555443333456789999999999987
Q ss_pred CCCCC-cccchhhHHHHHHHHhhhc
Q 011914 237 RMGGT-TQYTVNNQMVNATLMNIAD 260 (475)
Q Consensus 237 ~r~~~-~~~~~~~~~v~~~Ll~l~d 260 (475)
+..+. ...++....+.+.|+++++
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Le 212 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILE 212 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHh
Confidence 63221 1223344567788888886
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=3.8e-12 Score=138.99 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=105.0
Q ss_pred HHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCC-----------------------------ceEEEecCccc
Q 011914 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------------NPIMMSAGELE 196 (475)
Q Consensus 146 i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~-----------------------------~~i~vs~s~l~ 196 (475)
.+++.+.. -+.+..+||+||+|+|||++|+.+|+.++. .++.++...
T Consensus 27 ~L~~al~~--gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas-- 102 (700)
T PRK12323 27 ALTHALEQ--QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS-- 102 (700)
T ss_pred HHHHHHHh--CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc--
Confidence 34444433 256788999999999999999999999875 223333221
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 011914 197 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276 (475)
Q Consensus 197 s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~ 276 (475)
......||++.+.+...-..+...|+||||+|.+... ..+.|++.++ +..
T Consensus 103 ----~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~-------------AaNALLKTLE-------------EPP 152 (700)
T PRK12323 103 ----NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH-------------AFNAMLKTLE-------------EPP 152 (700)
T ss_pred ----cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH-------------HHHHHHHhhc-------------cCC
Confidence 1123456666665432222556789999999977321 2234555444 556
Q ss_pred CCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCC--hHHHHHHHhc
Q 011914 277 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDT 337 (475)
Q Consensus 277 ~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~~~ 337 (475)
.++.+|++||+++.|.+.|++ |+..+-+ .++.++..+.++.++..+++. .+.+..++..
T Consensus 153 ~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred CCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 788999999999999999999 8876666 588888888888777665444 3334443433
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.39 E-value=1.5e-11 Score=129.82 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=101.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r 238 (475)
+..++||||||||||++|+++|+.++..|+.+++... ....++.+++.+..........||||||+|.+...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~- 107 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA- 107 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-
Confidence 4579999999999999999999999999999987632 24556777777654433557889999999976321
Q ss_pred CCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEec--CCCCCCccccccCCCceEEEe-cCCHHHHHH
Q 011914 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIG 315 (475)
Q Consensus 239 ~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT--N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~ 315 (475)
....|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.++...
T Consensus 108 ------------~q~~LL~~le---------------~~~iilI~att~n~~~~l~~aL~S--R~~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 108 ------------QQDALLPHVE---------------DGTITLIGATTENPSFEVNPALLS--RAQVFELKPLSEEDIEQ 158 (413)
T ss_pred ------------HHHHHHHHhh---------------cCcEEEEEeCCCChhhhccHHHhc--cceeeEeCCCCHHHHHH
Confidence 1234444333 2345566544 445689999999 8844444 578999999
Q ss_pred HHHhhcCC----C-CCChHHHHHHHhcCCCCch
Q 011914 316 VCSGIFRT----D-NVPKEDIVKLVDTFPGQSI 343 (475)
Q Consensus 316 Il~~~l~~----~-~v~~~~l~~l~~~~~g~~i 343 (475)
+++..+.. . .++.+.+..++... +.++
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~~s-~Gd~ 190 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALARLA-NGDA 190 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhC-CCCH
Confidence 99877653 1 46666666665544 3344
No 70
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=7.3e-12 Score=133.42 Aligned_cols=164 Identities=16% Similarity=0.154 Sum_probs=106.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 235 (475)
...++||||||+|||+|++++++++ +..+++++...+...+.......-...|+.. .....+|+|||++.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFS 215 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-----cccCCEEEEcchhhhc
Confidence 3679999999999999999999985 6788888876554211100000000122221 3457799999999876
Q ss_pred cCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC----CCCccccccCCCce--EEEe--c
Q 011914 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF----STLYAPLIRDGRME--KFYW--A 307 (475)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~----~~Ld~aLlR~GRfd--~~i~--~ 307 (475)
++.. ++ ..+..++..+.+ .+..||+|||.+ ..+++.|++ ||. ..+. .
T Consensus 216 ~k~~--~q-----eelf~l~N~l~~----------------~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~ 270 (445)
T PRK12422 216 GKGA--TQ-----EEFFHTFNSLHT----------------EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHP 270 (445)
T ss_pred CChh--hH-----HHHHHHHHHHHH----------------CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCC
Confidence 5421 11 223333322221 234677777663 356788888 886 3444 4
Q ss_pred CCHHHHHHHHHhhcCCC--CCChHHHHHHHhcCCCCchhhHHHHHHH
Q 011914 308 PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSIDFFGALRAR 352 (475)
Q Consensus 308 P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~~g~~i~f~gal~~~ 352 (475)
|+.++|.+|++...... .++.+.+.-++..+++..-...|++..-
T Consensus 271 pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l 317 (445)
T PRK12422 271 LTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLL 317 (445)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999999877654 4667777778898887766777666654
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=7.8e-12 Score=140.51 Aligned_cols=146 Identities=17% Similarity=0.237 Sum_probs=97.9
Q ss_pred CCCe-EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc-----CCCCChHHHH----HHHHHHHHHHHHhCCceeE
Q 011914 157 KVPL-ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-----GNAGEPAKLI----RQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 157 ~~p~-glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s-----~~~Ge~e~~I----r~~f~~A~~~~~~~~p~IL 226 (475)
..|. .+||+||||||||++|+++|+.++.+++.+++++... ...|.+...+ ...+.++ ++....+||
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~---v~~~p~sVl 561 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA---VIKHPHAVL 561 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHH---HHhCCCcEE
Confidence 3454 6999999999999999999999999999999876532 1222111100 0112222 125567999
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC------------------
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF------------------ 288 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~------------------ 288 (475)
||||||++.+ .+...|++++++.....-.| ......+++||+|||.-
T Consensus 562 llDEieka~~-------------~v~~~LLq~ld~G~ltd~~g--~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~ 626 (758)
T PRK11034 562 LLDEIEKAHP-------------DVFNLLLQVMDNGTLTDNNG--RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNST 626 (758)
T ss_pred EeccHhhhhH-------------HHHHHHHHHHhcCeeecCCC--ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhH
Confidence 9999998743 36678888777433322122 12345788999999932
Q ss_pred -------CCCccccccCCCceEEEec--CCHHHHHHHHHhhcC
Q 011914 289 -------STLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322 (475)
Q Consensus 289 -------~~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~ 322 (475)
..+.|+|+. |+|.++.+ .+.++..+|+..++.
T Consensus 627 ~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 627 DAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred HHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 235678888 99988774 588888888876554
No 72
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.38 E-value=2.4e-12 Score=129.81 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=100.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
..+..++||||||||||++|+++|++++..+..++.+.+.. ...+...+.. ...+.+|||||++.+..
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~------~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 95 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHh------cccCCEEEEehHhhhCH
Confidence 44667999999999999999999999998877666543321 1112222221 34578999999998754
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCC-cccCCCccc----cCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYN----QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~-~v~ldg~~~----~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
.. ...|..++++-. .+-++..+. ....+.+.+|++||++..+++++++ ||...+. .|+
T Consensus 96 ~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~ 160 (305)
T TIGR00635 96 AV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYT 160 (305)
T ss_pred HH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCC
Confidence 21 122332222100 011111000 0123457788999999999999999 8876655 689
Q ss_pred HHHHHHHHHhhcCC--CCCChHHHHHHHhcCCC
Q 011914 310 REDRIGVCSGIFRT--DNVPKEDIVKLVDTFPG 340 (475)
Q Consensus 310 ~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g 340 (475)
.+++.+|++..... ..++.+.+..+++...|
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G 193 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIARRSRG 193 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC
Confidence 99999999977654 34566666666665433
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.4e-11 Score=131.96 Aligned_cols=149 Identities=13% Similarity=0.169 Sum_probs=100.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC------------------------ceEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~------------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+|||||||||||++|+++|+.++. .++.++++.- .....+|++.+
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~ 107 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRD 107 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHH
Confidence 56788999999999999999999999764 3445544311 11345666665
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-......||||||+|.+... ....|+..++ .....+.+|++|+.+..++
T Consensus 108 ~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE-------------~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 108 AVGYRPMEGKYKVYIIDEVHMLTKE-------------AFNALLKTLE-------------EPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred HHhhChhcCCeEEEEEEChHHhHHH-------------HHHHHHHHHH-------------hCCCcEEEEEEeCChHhhh
Confidence 5431111345679999999977321 1234555443 3345677777777788999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCC--CCChHHHHHHHhcCC
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFP 339 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~~ 339 (475)
++|++ |+..+-+ .|+.++...+++..+... .++.+.+..++....
T Consensus 162 ~~L~S--R~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 162 PTIIS--RCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHhc--CcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 99999 8865444 588899999988877654 466666766766543
No 74
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.37 E-value=7.9e-12 Score=124.29 Aligned_cols=146 Identities=16% Similarity=0.248 Sum_probs=92.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCc------cccCCCCChHHHHHHHHHHH--------------HHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGNAGEPAKLIRQRYREA--------------ADIIK 219 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~------l~s~~~Ge~e~~Ir~~f~~A--------------~~~~~ 219 (475)
..+||+||||||||++|+++|+.+|.+++.+++.. +...+.|.....+..-|... ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 45899999999999999999999999999987753 22233322212111111100 00000
Q ss_pred -hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcccc----CCCCCceEEEecCCC-----C
Q 011914 220 -KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ----EENPRVPIIVTGNDF-----S 289 (475)
Q Consensus 220 -~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~----~~~~~V~VI~TTN~~-----~ 289 (475)
...+.+|+|||++.+-+ .+...|+.++++ ..+.+++.-.. ...++..||+|+|.. .
T Consensus 102 A~~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKP-------------ETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHcCCEEEEcchhhCCH-------------HHHHHHHHHhcC-CeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 23456999999997532 244667776663 33444432000 022466799999976 3
Q ss_pred CCccccccCCCceEEEe-cCCHHHHHHHHHhhc
Q 011914 290 TLYAPLIRDGRMEKFYW-APTREDRIGVCSGIF 321 (475)
Q Consensus 290 ~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l 321 (475)
.++++|++ ||-.... .|+.++-.+|++.++
T Consensus 168 ~l~~aL~~--R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hcEEEECCCCCHHHHHHHHHHhh
Confidence 57889999 8854433 799999999998876
No 75
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.36 E-value=3.1e-12 Score=136.52 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=110.8
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCChHHHHHHHHHHHHHH
Q 011914 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI 217 (475)
Q Consensus 143 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~ 217 (475)
....++.+...++ .....++||||||||||+|++++++++ +..++++++.++.+.+...........|...
T Consensus 133 a~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~--- 208 (450)
T PRK00149 133 AHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEK--- 208 (450)
T ss_pred HHHHHHHHHhCcC-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHH---
Confidence 3444555444443 233569999999999999999999996 5678888887665322211100001112211
Q ss_pred HHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-CC---Ccc
Q 011914 218 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-ST---LYA 293 (475)
Q Consensus 218 ~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-~~---Ld~ 293 (475)
-..+.+|+|||++.+.++.. ++ +.+..++..+.+ .+..+|+|+|.+ .. +++
T Consensus 209 --~~~~dlLiiDDi~~l~~~~~--~~-----~~l~~~~n~l~~----------------~~~~iiits~~~p~~l~~l~~ 263 (450)
T PRK00149 209 --YRSVDVLLIDDIQFLAGKER--TQ-----EEFFHTFNALHE----------------AGKQIVLTSDRPPKELPGLEE 263 (450)
T ss_pred --HhcCCEEEEehhhhhcCCHH--HH-----HHHHHHHHHHHH----------------CCCcEEEECCCCHHHHHHHHH
Confidence 23578999999998865421 11 223333333222 123456666553 33 678
Q ss_pred ccccCCCceE--EEe--cCCHHHHHHHHHhhcCC--CCCChHHHHHHHhcCCCCchhhHHHHH
Q 011914 294 PLIRDGRMEK--FYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSIDFFGALR 350 (475)
Q Consensus 294 aLlR~GRfd~--~i~--~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g~~i~f~gal~ 350 (475)
.|.+ ||.. .+. .|+.++|.+|++..+.. ..++.+.+..+++.+.+..-...|++.
T Consensus 264 ~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 264 RLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred HHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 8888 8864 333 69999999999988864 457788888888888777666665554
No 76
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.36 E-value=1.2e-11 Score=130.04 Aligned_cols=128 Identities=17% Similarity=0.226 Sum_probs=86.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~-s~~~Ge~-e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
+..+||+||||||||++|+++|+.++.+|..++++.+. .+|+|+. +..+..+++.+...++...++||||||+|++..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 35799999999999999999999999999999988765 4688875 445555555443233456788999999999987
Q ss_pred CCCCC-cccchhhHHHHHHHHhhhcCCCcccCCCc-cccCCCCCceEEEecCC
Q 011914 237 RMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGM-YNQEENPRVPIIVTGND 287 (475)
Q Consensus 237 ~r~~~-~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~-~~~~~~~~V~VI~TTN~ 287 (475)
++.+. ...++....|.+.|+++++ .+.+.++.. -......+.++|.|+|-
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred hhccccccccccchhHHHHHHHHhh-ccceecccCCCccccCCCeEEEEcCCc
Confidence 54321 1223334467788888885 333322110 01122355667777775
No 77
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.36 E-value=2.4e-11 Score=136.99 Aligned_cols=142 Identities=15% Similarity=0.218 Sum_probs=98.6
Q ss_pred CCCe-EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc------------CCCCChH-HHHHHHHHHHHHHHHhCC
Q 011914 157 KVPL-ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES------------GNAGEPA-KLIRQRYREAADIIKKGK 222 (475)
Q Consensus 157 ~~p~-glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s------------~~~Ge~e-~~Ir~~f~~A~~~~~~~~ 222 (475)
..|. .+||+||||||||++|+++|+.++.+++.+++++... +|+|..+ ..+.+. . +...
T Consensus 481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~---~----~~~p 553 (731)
T TIGR02639 481 NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEA---V----RKHP 553 (731)
T ss_pred CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHH---H----HhCC
Confidence 3455 4899999999999999999999999999999877532 2333221 122222 2 2566
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-------------
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS------------- 289 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~------------- 289 (475)
.+||+|||+|++.+ .+...|++++++-... ++........+++||+|||...
T Consensus 554 ~~VvllDEieka~~-------------~~~~~Ll~~ld~g~~~--d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~ 618 (731)
T TIGR02639 554 HCVLLLDEIEKAHP-------------DIYNILLQVMDYATLT--DNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSE 618 (731)
T ss_pred CeEEEEechhhcCH-------------HHHHHHHHhhccCeee--cCCCcccCCCCCEEEECCCcchhhhhhccCCcchh
Confidence 78999999997643 3557788888743322 2111123456888999998742
Q ss_pred ------------CCccccccCCCceEEEec--CCHHHHHHHHHhhcC
Q 011914 290 ------------TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322 (475)
Q Consensus 290 ------------~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~ 322 (475)
.+.|+|+. |+|.++.+ .+.++..+|++..+.
T Consensus 619 ~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 619 NVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred hhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 24667777 99987773 699999999887664
No 78
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.35 E-value=1.4e-11 Score=121.80 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=103.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
..+-++|||||||.|||+||..||+++|.++-..+++.+.. .| -+-.++. .-....|||||||+.+.+
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--~g----DlaaiLt------~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--PG----DLAAILT------NLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--hh----hHHHHHh------cCCcCCeEEEehhhhcCh
Confidence 45678999999999999999999999999999888887652 12 1222222 134567999999998754
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCC---Cc-----cccCCCCCceEEEecCCCCCCccccccCCCceEEEe--
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLP---GM-----YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 306 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ld---g~-----~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-- 306 (475)
. +...|.-.+++ .++| |. ...-..+.-.+|++|-+...|..+|+. ||.....
T Consensus 118 ~-------------vEE~LYpaMED---f~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rle 179 (332)
T COG2255 118 A-------------VEEVLYPAMED---FRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLE 179 (332)
T ss_pred h-------------HHHHhhhhhhh---eeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeee
Confidence 3 22334332221 2222 11 001224556689999999999999999 7776655
Q ss_pred cCCHHHHHHHHHhhcCC--CCCChHHHHHHHhc
Q 011914 307 APTREDRIGVCSGIFRT--DNVPKEDIVKLVDT 337 (475)
Q Consensus 307 ~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~ 337 (475)
+.+.++..+|++..... ..++.+...+++.+
T Consensus 180 fY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 180 FYTVEELEEIVKRSAKILGIEIDEEAALEIARR 212 (332)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh
Confidence 78999999999865543 45566655555555
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.6e-11 Score=137.85 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=101.3
Q ss_pred HHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCce------------------------EEEecCccccCCC
Q 011914 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINP------------------------IMMSAGELESGNA 200 (475)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~------------------------i~vs~s~l~s~~~ 200 (475)
..+++.+.. -+.|..+|||||||||||++|+++|+.++..- +.+++..
T Consensus 26 ~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas------ 97 (944)
T PRK14949 26 HALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS------ 97 (944)
T ss_pred HHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecccc------
Confidence 334555443 25678899999999999999999999987531 1111110
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 011914 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 280 (475)
Q Consensus 201 Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~ 280 (475)
-.....||++...+...-..+...|+||||+|.+.. .....|+..++ +...++.
T Consensus 98 ~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-------------eAqNALLKtLE-------------EPP~~vr 151 (944)
T PRK14949 98 RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-------------SSFNALLKTLE-------------EPPEHVK 151 (944)
T ss_pred ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-------------HHHHHHHHHHh-------------ccCCCeE
Confidence 011344666655443222245677999999998732 22345555454 5567778
Q ss_pred EEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCC--hHHHHHHH
Q 011914 281 IIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLV 335 (475)
Q Consensus 281 VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~ 335 (475)
+|++|+.+..|.+.|++ |+..+-+ .++.++..+.++.++...++. .+.+..++
T Consensus 152 FILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA 207 (944)
T PRK14949 152 FLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA 207 (944)
T ss_pred EEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88888889999999998 8866555 468888888888877655444 33444443
No 80
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.5e-11 Score=134.70 Aligned_cols=147 Identities=13% Similarity=0.187 Sum_probs=101.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC------------------------ceEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~------------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.+..+||+||||+|||++|+++|+.+++ .++.++++.- .....||.+..
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~ 108 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLD 108 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHH
Confidence 56789999999999999999999999865 3344443311 12345666665
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-..++..|+||||+|.+... ....|+.+++ +....+.+|++|+++..++
T Consensus 109 ~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NALLKtLE-------------EPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 109 NVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNALLKTLE-------------EPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred HHhhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHHh-------------cCCCCcEEEEEECChHhhh
Confidence 5432222456789999999976321 2244555554 4456778888999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhc
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 337 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 337 (475)
+.+++ |+..+-+ .++.++..+.++.++...+ ++.+.+..++..
T Consensus 163 ~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 163 ITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99888 8866655 5788999988888887654 444555555544
No 81
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.35 E-value=4.7e-12 Score=133.24 Aligned_cols=177 Identities=19% Similarity=0.199 Sum_probs=107.9
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCChHHHHHHHHHHHHHH
Q 011914 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI 217 (475)
Q Consensus 143 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~ 217 (475)
....++.+...++ .....++||||||+|||+|++++++++ +..++++++.++...+...........|...
T Consensus 121 a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~--- 196 (405)
T TIGR00362 121 AHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEK--- 196 (405)
T ss_pred HHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 3444555544443 334679999999999999999999986 6788888877654322110000000112111
Q ss_pred HHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC-CCC---Ccc
Q 011914 218 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FST---LYA 293 (475)
Q Consensus 218 ~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~-~~~---Ld~ 293 (475)
-..+.+|+|||++.+.++.. .+ ..+..++..+.+ .+..+|+|+|. |.. +++
T Consensus 197 --~~~~dlLiiDDi~~l~~~~~--~~-----~~l~~~~n~~~~----------------~~~~iiits~~~p~~l~~l~~ 251 (405)
T TIGR00362 197 --YRSVDLLLIDDIQFLAGKER--TQ-----EEFFHTFNALHE----------------NGKQIVLTSDRPPKELPGLEE 251 (405)
T ss_pred --HHhCCEEEEehhhhhcCCHH--HH-----HHHHHHHHHHHH----------------CCCCEEEecCCCHHHHhhhhh
Confidence 12367999999998865421 11 123333322221 22345666654 443 567
Q ss_pred ccccCCCceE--EEe--cCCHHHHHHHHHhhcCC--CCCChHHHHHHHhcCCCCchhhHHHHH
Q 011914 294 PLIRDGRMEK--FYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSIDFFGALR 350 (475)
Q Consensus 294 aLlR~GRfd~--~i~--~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g~~i~f~gal~ 350 (475)
.+++ ||.. .+. .|+.++|.+|++..+.. ..++.+.+..++..+.+..-+..|++.
T Consensus 252 ~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 252 RLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred hhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7888 8864 333 69999999999988865 456677888888887766555555443
No 82
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=5.9e-12 Score=137.36 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=106.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
..|+|||++|+|||+|+.+||+++ +..++++++.++.+.+...........|.+. -..+.+|+||||+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-----y~~~DLLlIDDIq~l 389 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-----YREMDILLVDDIQFL 389 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-----hhcCCEEEEehhccc
Confidence 349999999999999999999986 5678888887766433211111111123321 245789999999988
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC----CCCccccccCCCceEEE--e--
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF----STLYAPLIRDGRMEKFY--W-- 306 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~----~~Ld~aLlR~GRfd~~i--~-- 306 (475)
.++.. ++ ..+..++..+.+ .+..||+|+|.+ ..+++.|++ ||..-+ .
T Consensus 390 ~gke~--tq-----eeLF~l~N~l~e----------------~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~ 444 (617)
T PRK14086 390 EDKES--TQ-----EEFFHTFNTLHN----------------ANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQ 444 (617)
T ss_pred cCCHH--HH-----HHHHHHHHHHHh----------------cCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcC
Confidence 75421 11 233333333222 234577788775 357888999 776644 3
Q ss_pred cCCHHHHHHHHHhhcCCC--CCChHHHHHHHhcCCCCchhhHHHHH
Q 011914 307 APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSIDFFGALR 350 (475)
Q Consensus 307 ~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~~g~~i~f~gal~ 350 (475)
.|+.+.|.+||+.++... .++.+.+.-|+..+....-.+.|++.
T Consensus 445 ~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 445 PPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 499999999999888754 45666777888888776556665554
No 83
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.33 E-value=2.4e-11 Score=125.30 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=88.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC---------CceEEEecCccccC----------C---------CCC-hHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG----------N---------AGE-PAKLI 207 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg---------~~~i~vs~s~l~s~----------~---------~Ge-~e~~I 207 (475)
..|..++|+||||||||++++++++++. +.++++++....+. . .|. ..+.+
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 4566799999999999999999998753 56778887543211 0 010 11222
Q ss_pred HHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC
Q 011914 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287 (475)
Q Consensus 208 r~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~ 287 (475)
+.+++.. .+...+.||+|||+|.+.+.. + .+...|..+.+ +......++.+|+++|+
T Consensus 118 ~~l~~~l---~~~~~~~vlvIDE~d~L~~~~----~------~~L~~l~~~~~----------~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 118 RRLYKEL---NERGDSLIIVLDEIDYLVGDD----D------DLLYQLSRARS----------NGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHHH---HhcCCeEEEEECchhhhccCC----c------HHHHhHhcccc----------ccCCCCCeEEEEEEECC
Confidence 2333321 124668899999999997321 1 12223333211 01123467889999998
Q ss_pred CC---CCccccccCCCce-EEEe--cCCHHHHHHHHHhhcC
Q 011914 288 FS---TLYAPLIRDGRME-KFYW--APTREDRIGVCSGIFR 322 (475)
Q Consensus 288 ~~---~Ld~aLlR~GRfd-~~i~--~P~~eeR~~Il~~~l~ 322 (475)
++ .+++.+.+ ||. ..+. .++.++..+|++..+.
T Consensus 175 ~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 175 LKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred cchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 86 47777777 664 3333 5799999999997765
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=8.5e-12 Score=130.89 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=96.8
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCc-----------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~-----------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
.+.|.++||+||||+|||++|+++|+.+... +..+.... .. -....||++++
T Consensus 33 ~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~---~~--i~i~~iR~l~~ 107 (394)
T PRK07940 33 SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG---LS--IGVDEVRELVT 107 (394)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc---cc--CCHHHHHHHHH
Confidence 4478999999999999999999999986543 11221110 11 12345788887
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-......|+||||+|.+... . ...|+..++ ++..++.+|++|++++.|.
T Consensus 108 ~~~~~p~~~~~kViiIDead~m~~~------------a-anaLLk~LE-------------ep~~~~~fIL~a~~~~~ll 161 (394)
T PRK07940 108 IAARRPSTGRWRIVVIEDADRLTER------------A-ANALLKAVE-------------EPPPRTVWLLCAPSPEDVL 161 (394)
T ss_pred HHHhCcccCCcEEEEEechhhcCHH------------H-HHHHHHHhh-------------cCCCCCeEEEEECChHHCh
Confidence 7642111355679999999987322 1 244555454 4456667777777799999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCChHH---HHHHHhcCCCC
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKED---IVKLVDTFPGQ 341 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~---l~~l~~~~~g~ 341 (475)
|.+++ |+..+.+ .|+.++..+++... .+++.+. ++.++.+.++.
T Consensus 162 pTIrS--Rc~~i~f~~~~~~~i~~~L~~~---~~~~~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 162 PTIRS--RCRHVALRTPSVEAVAEVLVRR---DGVDPETARRAARASQGHIGR 209 (394)
T ss_pred HHHHh--hCeEEECCCCCHHHHHHHHHHh---cCCCHHHHHHHHHHcCCCHHH
Confidence 99999 8865555 68888888777532 2455553 34444454333
No 85
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=3.3e-11 Score=125.32 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=95.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+||+||||+|||++|+++|+++... ++.++++. ......++++.+
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~ 109 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILD 109 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHH
Confidence 567889999999999999999999997632 22222110 012344566555
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-......|+||||+|.+.. .....|+..++ +...++.+|++|++++.+.
T Consensus 110 ~~~~~p~~~~~kviIIDEa~~l~~-------------~a~naLLk~lE-------------e~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 110 NIYYSPSKSRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPQHIKFILATTDVEKIP 163 (363)
T ss_pred HHhcCcccCCceEEEEEChhhcCH-------------HHHHHHHHHHh-------------cCCCCeEEEEEcCChHhhh
Confidence 432110123456999999997632 11233554343 3455677888888889999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhc
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 337 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 337 (475)
+++++ |+..+-+ .|+.++..++++..+...+ ++.+.+..++..
T Consensus 164 ~tI~S--Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~ 209 (363)
T PRK14961 164 KTILS--RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYH 209 (363)
T ss_pred HHHHh--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99988 7754433 5799999999998887655 555555555544
No 86
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=3.6e-11 Score=132.55 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=95.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.+..+||+||+|+|||++|+++|+.++.. ++.+++.. . .....+|++.+
T Consensus 36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas----~--~~VddiR~li~ 109 (647)
T PRK07994 36 RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRELLD 109 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc----c--CCHHHHHHHHH
Confidence 567889999999999999999999998662 23333221 0 12344666655
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-..+...|+||||+|.+.. .....|+..++ +...++.+|++|++++.|.
T Consensus 110 ~~~~~p~~g~~KV~IIDEah~Ls~-------------~a~NALLKtLE-------------EPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 110 NVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred HHHhhhhcCCCEEEEEechHhCCH-------------HHHHHHHHHHH-------------cCCCCeEEEEecCCccccc
Confidence 543111245677999999997632 12245555454 5567788888899999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCC
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP 327 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~ 327 (475)
+.|++ |+..+.+ .++.++..+.++.++...++.
T Consensus 164 ~TI~S--RC~~~~f~~Ls~~ei~~~L~~il~~e~i~ 197 (647)
T PRK07994 164 VTILS--RCLQFHLKALDVEQIRQQLEHILQAEQIP 197 (647)
T ss_pred hHHHh--hheEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999 8755555 578899988888887655544
No 87
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.31 E-value=5.9e-12 Score=125.50 Aligned_cols=163 Identities=18% Similarity=0.278 Sum_probs=102.3
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc------eEEEecCccccCCCCChHHHHH---HHHHH
Q 011914 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGEPAKLIR---QRYRE 213 (475)
Q Consensus 143 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~------~i~vs~s~l~s~~~Ge~e~~Ir---~~f~~ 213 (475)
++..+++-+.. +.-..+|||||||||||+.|+++|.++..+ +...+++.-. |-. .+| +-|.+
T Consensus 44 vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gis--vvr~Kik~fak 114 (346)
T KOG0989|consen 44 VVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GIS--VVREKIKNFAK 114 (346)
T ss_pred HHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----ccc--chhhhhcCHHH
Confidence 45555554443 334579999999999999999999997651 2222222222 211 122 12333
Q ss_pred HHHHHH--hCC---c-eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC
Q 011914 214 AADIIK--KGK---M-CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287 (475)
Q Consensus 214 A~~~~~--~~~---p-~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~ 287 (475)
-....+ ... | .|++|||+|.+... ...+|.+.++ .....+.+|..||.
T Consensus 115 l~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE-------------~~s~~trFiLIcny 168 (346)
T KOG0989|consen 115 LTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTME-------------DFSRTTRFILICNY 168 (346)
T ss_pred HhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHh-------------ccccceEEEEEcCC
Confidence 221221 122 2 59999999987542 2256666554 34677889999999
Q ss_pred CCCCccccccCCCceEEEec-CCHHHHHHHHHhhcCCCCCChH--HHHHHHhcCCCCch
Q 011914 288 FSTLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVPKE--DIVKLVDTFPGQSI 343 (475)
Q Consensus 288 ~~~Ld~aLlR~GRfd~~i~~-P~~eeR~~Il~~~l~~~~v~~~--~l~~l~~~~~g~~i 343 (475)
.+.|+.++.+ |+.++.+- ...+.....|+.+..+++++.+ .+..++.. ++.++
T Consensus 169 lsrii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~-S~GdL 224 (346)
T KOG0989|consen 169 LSRIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKI-SDGDL 224 (346)
T ss_pred hhhCChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCcH
Confidence 9999999999 99998883 4555667777778777666544 44444433 44444
No 88
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.31 E-value=6.5e-11 Score=131.79 Aligned_cols=153 Identities=14% Similarity=0.182 Sum_probs=96.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccccCC----------------CC-ChHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGN----------------AG-EPAKLIRQRY 211 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~s~~----------------~G-e~e~~Ir~~f 211 (475)
...|+|+|+||||||.+++.+.+++ .+.+++|+|..+...+ .| .....+..+|
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF 860 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLF 860 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHH
Confidence 3556799999999999999998775 2567888885433211 01 1223444444
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC---C
Q 011914 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND---F 288 (475)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~---~ 288 (475)
.... -......||+|||||.+..+. + ..|++|.+ |......++.||+++|. +
T Consensus 861 ~~L~--k~~r~v~IIILDEID~L~kK~----Q---------DVLYnLFR----------~~~~s~SKLiLIGISNdlDLp 915 (1164)
T PTZ00112 861 NQNK--KDNRNVSILIIDEIDYLITKT----Q---------KVLFTLFD----------WPTKINSKLVLIAISNTMDLP 915 (1164)
T ss_pred hhhh--cccccceEEEeehHhhhCccH----H---------HHHHHHHH----------HhhccCCeEEEEEecCchhcc
Confidence 4321 013346799999999987541 1 33555554 33344567899999986 5
Q ss_pred CCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCC--CCCChHHHHHHHh
Q 011914 289 STLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT--DNVPKEDIVKLVD 336 (475)
Q Consensus 289 ~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~ 336 (475)
..|++.+.++.++.++.+ .++.+++.+||+..+.. .-++.+.+..+++
T Consensus 916 erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIAr 966 (1164)
T PTZ00112 916 ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCAR 966 (1164)
T ss_pred hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 567788887333333444 57999999999977764 2345544443333
No 89
>PLN03025 replication factor C subunit; Provisional
Probab=99.31 E-value=7.1e-12 Score=127.90 Aligned_cols=148 Identities=14% Similarity=0.203 Sum_probs=95.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh-C----CceEEEecCccccCCCCChHHHHHHHHHHHHHH---HHhCCceeEEecccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM-G----INPIMMSAGELESGNAGEPAKLIRQRYREAADI---IKKGKMCCLFINDLD 232 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el-g----~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~---~~~~~p~ILfIDEiD 232 (475)
.+|||||||||||++|+++|+++ + ..++.+++++.. | ...++......... .....+.||+|||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~----~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR----G--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc----c--HHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 58999999999999999999997 2 235556555332 1 12344333221100 002356899999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 311 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~e 311 (475)
.+... ....|...++ .......+|++||..+.+.++|++ |+..+-+ .|+.+
T Consensus 110 ~lt~~-------------aq~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~S--Rc~~i~f~~l~~~ 161 (319)
T PLN03025 110 SMTSG-------------AQQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQS--RCAIVRFSRLSDQ 161 (319)
T ss_pred hcCHH-------------HHHHHHHHHh-------------cccCCceEEEEeCCccccchhHHH--hhhcccCCCCCHH
Confidence 87432 1234444343 223445688899999999999998 7754333 58899
Q ss_pred HHHHHHHhhcCCCC--CChHHHHHHHhcCCCCch
Q 011914 312 DRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSI 343 (475)
Q Consensus 312 eR~~Il~~~l~~~~--v~~~~l~~l~~~~~g~~i 343 (475)
+....++.++...+ ++.+.+..++.... .++
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~-gDl 194 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTAD-GDM 194 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Confidence 99999998887654 55667777776643 344
No 90
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=2.1e-11 Score=129.85 Aligned_cols=174 Identities=17% Similarity=0.259 Sum_probs=106.2
Q ss_pred HHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCCh-HHHHHHHHHHHHHHH
Q 011914 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEP-AKLIRQRYREAADII 218 (475)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~-e~~Ir~~f~~A~~~~ 218 (475)
..++.+...++. +..++||||||+|||+|++++++++ +..++++++.++...+...- ...+ .-|....
T Consensus 118 ~~~~~~~~~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~-~~f~~~~--- 191 (440)
T PRK14088 118 HAALEVAKNPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL-NEFREKY--- 191 (440)
T ss_pred HHHHHHHhCcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccH-HHHHHHH---
Confidence 334444433442 4459999999999999999999985 45778888766543221000 0001 1122111
Q ss_pred HhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEec-CCCCC---Cccc
Q 011914 219 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG-NDFST---LYAP 294 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT-N~~~~---Ld~a 294 (475)
...+.+|+|||++.+.++.. .+ ..+..++..+.+ .+..+|+|| +.|.. +.+.
T Consensus 192 -~~~~dvLlIDDi~~l~~~~~--~q-----~elf~~~n~l~~----------------~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 192 -RKKVDVLLIDDVQFLIGKTG--VQ-----TELFHTFNELHD----------------SGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred -HhcCCEEEEechhhhcCcHH--HH-----HHHHHHHHHHHH----------------cCCeEEEECCCCHHHHHHHHHH
Confidence 23688999999998865421 11 223333333222 223466666 45554 4566
Q ss_pred cccCCCceE--EEe--cCCHHHHHHHHHhhcCC--CCCChHHHHHHHhcCCCCchhhHHHHH
Q 011914 295 LIRDGRMEK--FYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSIDFFGALR 350 (475)
Q Consensus 295 LlR~GRfd~--~i~--~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g~~i~f~gal~ 350 (475)
+.+ ||.. .+. .|+.+.|.+|++..... ..++.+.+..+++.+.+..-...|++.
T Consensus 248 L~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 248 LVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred Hhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 777 7753 222 59999999999988764 456777888888888776666665554
No 91
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.28 E-value=5.6e-11 Score=123.94 Aligned_cols=155 Identities=14% Similarity=0.216 Sum_probs=93.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccC----------CCC----ChHHHHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESG----------NAG----EPAKLIRQRYREAADI 217 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~----------~~G----e~e~~Ir~~f~~A~~~ 217 (475)
..|..++||||||||||++++.+++++ ++.++++++....+. ..+ .......++++...+.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 345668999999999999999999986 577888887643210 111 0000112233333333
Q ss_pred HH-hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC---CCcc
Q 011914 218 IK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYA 293 (475)
Q Consensus 218 ~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~---~Ld~ 293 (475)
++ ...+.||+|||+|.+..+.. . .+...|+.+.. .....++.+|+++|..+ .+++
T Consensus 133 l~~~~~~~viviDE~d~l~~~~~---~------~~l~~l~~~~~------------~~~~~~v~vI~i~~~~~~~~~l~~ 191 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKEG---N------DVLYSLLRAHE------------EYPGARIGVIGISSDLTFLYILDP 191 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccCC---c------hHHHHHHHhhh------------ccCCCeEEEEEEECCcchhhhcCH
Confidence 33 45678999999999872211 1 12233333222 11234788999998764 4667
Q ss_pred ccccCCCce-EEEe--cCCHHHHHHHHHhhcCC----CCCChHHHHHH
Q 011914 294 PLIRDGRME-KFYW--APTREDRIGVCSGIFRT----DNVPKEDIVKL 334 (475)
Q Consensus 294 aLlR~GRfd-~~i~--~P~~eeR~~Il~~~l~~----~~v~~~~l~~l 334 (475)
.+.+ ||. ..+. .++.++..+|++..+.. ..++.+.+..+
T Consensus 192 ~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 237 (394)
T PRK00411 192 RVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLI 237 (394)
T ss_pred HHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHH
Confidence 6666 443 2333 46999999999877643 23555544433
No 92
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=4.4e-11 Score=129.37 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=101.8
Q ss_pred HHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCC
Q 011914 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNA 200 (475)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~ 200 (475)
..+++.+.. .+.|..+||+||||||||++|+++|+.++.. ++.++++.
T Consensus 26 ~~L~~~~~~--~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas------ 97 (509)
T PRK14958 26 RALSNALDQ--QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS------ 97 (509)
T ss_pred HHHHHHHHh--CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc------
Confidence 344444433 2567889999999999999999999998652 44444331
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 011914 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 280 (475)
Q Consensus 201 Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~ 280 (475)
......+|++.+.+...-..++..|+||||+|.+... ....|+..++ +..+++.
T Consensus 98 ~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~naLLk~LE-------------epp~~~~ 151 (509)
T PRK14958 98 RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------SFNALLKTLE-------------EPPSHVK 151 (509)
T ss_pred cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------HHHHHHHHHh-------------ccCCCeE
Confidence 1123446666554421111355679999999977432 1234555444 4456778
Q ss_pred EEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhc
Q 011914 281 IIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 337 (475)
Q Consensus 281 VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 337 (475)
+|++|++++.+.+.+++ |+..+-+ .++.++....++.++...++ +.+.+..++..
T Consensus 152 fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~ 209 (509)
T PRK14958 152 FILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA 209 (509)
T ss_pred EEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888899999999988 7755544 46777777777777766554 44445555444
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=6.1e-11 Score=130.75 Aligned_cols=159 Identities=14% Similarity=0.164 Sum_probs=104.8
Q ss_pred HHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCC
Q 011914 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGN 199 (475)
Q Consensus 144 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~ 199 (475)
+..+++.+.. -+.|..+||+||+|||||++|+++|+.++.. ++.++...
T Consensus 25 v~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs----- 97 (709)
T PRK08691 25 VKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS----- 97 (709)
T ss_pred HHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccc-----
Confidence 3344444443 2567899999999999999999999997542 12222111
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 011914 200 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279 (475)
Q Consensus 200 ~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V 279 (475)
......||+++..+...-......||||||+|.+.. .....|+..++ +....+
T Consensus 98 -~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-------------~A~NALLKtLE-------------EPp~~v 150 (709)
T PRK08691 98 -NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-------------SAFNAMLKTLE-------------EPPEHV 150 (709)
T ss_pred -cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-------------HHHHHHHHHHH-------------hCCCCc
Confidence 122356777776553111235568999999986521 11234555444 445677
Q ss_pred eEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhcC
Q 011914 280 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTF 338 (475)
Q Consensus 280 ~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~~ 338 (475)
.+|++||++..+.+.+++ |+-.+-+ .++.++....++.++...++ +.+.+..++...
T Consensus 151 ~fILaTtd~~kL~~TIrS--RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A 210 (709)
T PRK08691 151 KFILATTDPHKVPVTVLS--RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210 (709)
T ss_pred EEEEEeCCccccchHHHH--HHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 889999999999999887 8855544 58889999999988887654 444555555443
No 94
>PRK06893 DNA replication initiation factor; Validated
Probab=99.25 E-value=3.4e-11 Score=117.44 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=90.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
..++||||||||||+|++++|+++ +....+++..... .....+++. ..+..+|+|||++.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLEN------LEQQDLVCLDDLQAVIG 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhh------cccCCEEEEeChhhhcC
Confidence 368999999999999999999985 3444555543211 011112221 23467999999998865
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecC-CCCCCc---cccccCCCceEEEe--cCCH
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFSTLY---APLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN-~~~~Ld---~aLlR~GRfd~~i~--~P~~ 310 (475)
... . ...+...+..+. + ....+||.|+| .|..++ +.|.++.++...+. .|+.
T Consensus 106 ~~~--~-----~~~l~~l~n~~~--------------~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 106 NEE--W-----ELAIFDLFNRIK--------------E-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred ChH--H-----HHHHHHHHHHHH--------------H-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 421 0 112222222211 1 12233445554 465554 78888444445555 6999
Q ss_pred HHHHHHHHhhcCC--CCCChHHHHHHHhcCCCCchhhH
Q 011914 311 EDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSIDFF 346 (475)
Q Consensus 311 eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g~~i~f~ 346 (475)
++|.+|++..... -.++.+.+.-++..+++.--...
T Consensus 164 e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 164 EQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHH
Confidence 9999999977654 45677777778887665544433
No 95
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.2e-10 Score=125.74 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=101.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc----------------------------eEEEecCccccCCCCChHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------------------PIMMSAGELESGNAGEPAKLIR 208 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~----------------------------~i~vs~s~l~s~~~Ge~e~~Ir 208 (475)
+.|..+||+||||||||++|+++|+.++.. ++.+++.. ......++
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir 114 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIR 114 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHH
Confidence 568899999999999999999999998652 22222211 11245677
Q ss_pred HHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC
Q 011914 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (475)
Q Consensus 209 ~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~ 288 (475)
.+.+.+...--.....|+||||+|.+.. .....|+..++ +....+.+|++|+.+
T Consensus 115 ~iie~a~~~P~~~~~KVvIIDEa~~Ls~-------------~a~naLLk~LE-------------epp~~~vfI~aTte~ 168 (507)
T PRK06645 115 RIIESAEYKPLQGKHKIFIIDEVHMLSK-------------GAFNALLKTLE-------------EPPPHIIFIFATTEV 168 (507)
T ss_pred HHHHHHHhccccCCcEEEEEEChhhcCH-------------HHHHHHHHHHh-------------hcCCCEEEEEEeCCh
Confidence 7777664221134567999999987632 11234444333 455677788888888
Q ss_pred CCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhcCC
Q 011914 289 STLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTFP 339 (475)
Q Consensus 289 ~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~~~ 339 (475)
+.+++++++ |+..+-. .++.++...+++.++...++ +.+.+..++....
T Consensus 169 ~kI~~tI~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 169 QKIPATIIS--RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHhhHHHHh--cceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 999999988 7755444 58999999999988876554 5555555555433
No 96
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.6e-10 Score=125.57 Aligned_cols=147 Identities=14% Similarity=0.193 Sum_probs=97.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC------------------------ceEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~------------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+||+||||+|||++|+++|+.+.. .++.+++.. ..| ...++.+.+
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas----~~g--vd~ir~ii~ 109 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS----RTG--VEETKEILD 109 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc----ccC--HHHHHHHHH
Confidence 56788999999999999999999998764 233333211 111 234566665
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-..+...|+||||+|.+.. .....|+..++ +....+.+|++|+++..+.
T Consensus 110 ~~~~~p~~g~~kViIIDEa~~ls~-------------~a~naLLK~LE-------------epp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 110 NIQYMPSQGRYKVYLIDEVHMLSK-------------QSFNALLKTLE-------------EPPEYVKFILATTDYHKIP 163 (546)
T ss_pred HHHhhhhcCCcEEEEEechhhccH-------------HHHHHHHHHHh-------------cCCCCceEEEEECChhhhh
Confidence 554222245677999999987632 12245555454 4456677787777888898
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhc
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 337 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 337 (475)
+.+++ |+..+-+ .++.++....++.++...++ +.+.+..++..
T Consensus 164 ~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~ 209 (546)
T PRK14957 164 VTILS--RCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYH 209 (546)
T ss_pred hhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888 8855555 57888888888887776544 44444554444
No 97
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.24 E-value=6e-11 Score=120.71 Aligned_cols=154 Identities=15% Similarity=0.216 Sum_probs=94.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC-----CceEEEecCccccCC-------------CCC-------hHHHHHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGN-------------AGE-------PAKLIRQRYREAA 215 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg-----~~~i~vs~s~l~s~~-------------~Ge-------~e~~Ir~~f~~A~ 215 (475)
+++||||||||||++|+++++++. .+++.+++.++.... .+. ....++.+.+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 589999999999999999999974 346777776543211 010 0122222222221
Q ss_pred HHHH-hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccc
Q 011914 216 DIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294 (475)
Q Consensus 216 ~~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~a 294 (475)
.... ...+.+|+|||+|.+... ....|..+++ .......+|+||+.+..+.++
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED-------------AQQALRRIME-------------QYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHH-------------hccCCCeEEEEeCChhhCchh
Confidence 1100 134569999999976321 1123444343 122334567777777778888
Q ss_pred cccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhcCCCCch
Q 011914 295 LIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSI 343 (475)
Q Consensus 295 LlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~g~~i 343 (475)
|.+ |+..+.. .|+.++..++++.++...+ ++.+.+..++... +.++
T Consensus 172 L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-~gdl 220 (337)
T PRK12402 172 IRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-GGDL 220 (337)
T ss_pred hcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCH
Confidence 887 6644433 6899999999998877654 5566777777765 3344
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=1.5e-10 Score=126.71 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=101.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC------------------------ceEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~------------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.++.+|||||+|||||++|+.+|+.+.. +++.+++.. +.....||++..
T Consensus 36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~ 109 (559)
T PRK05563 36 KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRD 109 (559)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHH
Confidence 56788999999999999999999999652 344444321 223456777777
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-......|+||||+|.+... ....|+..++ +....+.+|++|+.++.|+
T Consensus 110 ~v~~~p~~~~~kViIIDE~~~Lt~~-------------a~naLLKtLE-------------epp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 110 KVKYAPSEAKYKVYIIDEVHMLSTG-------------AFNALLKTLE-------------EPPAHVIFILATTEPHKIP 163 (559)
T ss_pred HHhhCcccCCeEEEEEECcccCCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEeCChhhCc
Confidence 6542112455679999999977321 1234555444 4456677777788899999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhcC
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTF 338 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~~ 338 (475)
+.+++ |+..+-+ .|+.++....++.++...++ +.+.+..++...
T Consensus 164 ~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 164 ATILS--RCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred HHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 99988 7776555 58899998888888876554 444555555443
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.3e-10 Score=127.93 Aligned_cols=160 Identities=14% Similarity=0.194 Sum_probs=103.1
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc-----------------------------eEEEecC
Q 011914 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAG 193 (475)
Q Consensus 143 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~-----------------------------~i~vs~s 193 (475)
++..+++.+.. -+.|..+|||||+|+|||++|+++|+.+++. ++.+++.
T Consensus 24 vv~~L~~~l~~--~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa 101 (618)
T PRK14951 24 VVQALTNALTQ--QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA 101 (618)
T ss_pred HHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcc
Confidence 33445555443 2567889999999999999999999997641 2222221
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcccc
Q 011914 194 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273 (475)
Q Consensus 194 ~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~ 273 (475)
. ......+|++.+.+...-..+...|+||||+|.+... . .+.|+..++
T Consensus 102 s------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~------------a-~NaLLKtLE------------- 149 (618)
T PRK14951 102 S------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT------------A-FNAMLKTLE------------- 149 (618)
T ss_pred c------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH------------H-HHHHHHhcc-------------
Confidence 1 0113456666655431111344579999999976432 1 234444333
Q ss_pred CCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCC--hHHHHHHHhcC
Q 011914 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDTF 338 (475)
Q Consensus 274 ~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~~~~ 338 (475)
+....+.+|++|++++.+.+.+++ |+..+-+ .++.++..+.++.++...++. .+.+..++...
T Consensus 150 EPP~~~~fIL~Ttd~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 150 EPPEYLKFVLATTDPQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred cCCCCeEEEEEECCchhhhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 455677788888889999989988 8865555 578888888888887765554 44455555543
No 100
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.24 E-value=5e-11 Score=121.12 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=89.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCc---eEEEecCccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGA 235 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~---~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~-~~~p~ILfIDEiDal~ 235 (475)
..++||||||||||+||+.|++....+ |+.+++..- ..+-+|.+|+.+..... ..+..|||||||+.+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 468999999999999999999997665 777776633 24678999999875544 5667899999999653
Q ss_pred cCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEec--CCCCCCccccccCCCceEEEe-cCCHHH
Q 011914 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTRED 312 (475)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT--N~~~~Ld~aLlR~GRfd~~i~-~P~~ee 312 (475)
.. | ..+|+-. .+...|.+|++| |..-.|..+|++ |+-.++. ..+.++
T Consensus 236 ks-----Q--------QD~fLP~---------------VE~G~I~lIGATTENPSFqln~aLlS--RC~VfvLekL~~n~ 285 (554)
T KOG2028|consen 236 KS-----Q--------QDTFLPH---------------VENGDITLIGATTENPSFQLNAALLS--RCRVFVLEKLPVNA 285 (554)
T ss_pred hh-----h--------hhcccce---------------eccCceEEEecccCCCccchhHHHHh--ccceeEeccCCHHH
Confidence 21 1 1334321 235667788744 666689999999 8877776 456777
Q ss_pred HHHHHHh
Q 011914 313 RIGVCSG 319 (475)
Q Consensus 313 R~~Il~~ 319 (475)
-..||..
T Consensus 286 v~~iL~r 292 (554)
T KOG2028|consen 286 VVTILMR 292 (554)
T ss_pred HHHHHHH
Confidence 7777764
No 101
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.23 E-value=6.9e-11 Score=103.00 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=78.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
....++|+||||||||++++.+++.+ +.+++.+++................ .+...........+.+|+|||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-hHhHHHHhhccCCCeEEEEeChhhh
Confidence 45689999999999999999999998 8889988887655322211111000 0011111222567899999999976
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC--CCccccccCCCceEEEecC
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYWAP 308 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~--~Ld~aLlR~GRfd~~i~~P 308 (475)
... ....++.++. .+.. +. ....++.+|++||... .+++.+.+ ||+..+.+|
T Consensus 97 ~~~-------------~~~~~~~~i~-----~~~~-~~-~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 97 SRG-------------AQNALLRVLE-----TLND-LR-IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hHH-------------HHHHHHHHHH-----hcCc-ee-ccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 211 1122222222 0000 00 1246789999999887 67778887 888766643
No 102
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.9e-10 Score=123.42 Aligned_cols=161 Identities=17% Similarity=0.259 Sum_probs=107.9
Q ss_pred HHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhC------------------------CceEEEecCccccCC
Q 011914 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG------------------------INPIMMSAGELESGN 199 (475)
Q Consensus 144 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg------------------------~~~i~vs~s~l~s~~ 199 (475)
+..+++.+... +.|..+||+||||+|||++|+.+|+.++ ..++.+++++-
T Consensus 22 v~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~---- 95 (491)
T PRK14964 22 VRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN---- 95 (491)
T ss_pred HHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC----
Confidence 33444444332 5688999999999999999999999753 23455555421
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 011914 200 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279 (475)
Q Consensus 200 ~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V 279 (475)
.....+|.+.+.+...--.....|+||||+|.+.. .....|+..++ ++.+.+
T Consensus 96 --~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------~A~NaLLK~LE-------------ePp~~v 147 (491)
T PRK14964 96 --TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------SAFNALLKTLE-------------EPAPHV 147 (491)
T ss_pred --CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------HHHHHHHHHHh-------------CCCCCe
Confidence 12455777766653211145677999999987632 12234555444 556778
Q ss_pred eEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhcCCC
Q 011914 280 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 340 (475)
Q Consensus 280 ~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~g 340 (475)
.+|++|+.++.+.+.+++ |+..+-+ .++.++..+.++.++...+ ++.+.+..++....|
T Consensus 148 ~fIlatte~~Kl~~tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 148 KFILATTEVKKIPVTIIS--RCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred EEEEEeCChHHHHHHHHH--hheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888888999999998 8866555 5788888888888887654 455566655555433
No 103
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.23 E-value=1.9e-10 Score=131.40 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeE-EEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcccc------------CCCCC
Q 011914 139 MDKVVVHITKNFLNLPNVKVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES------------GNAGE 202 (475)
Q Consensus 139 ~d~~~~~i~k~~l~~~~~~~p~g-lLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s------------~~~Ge 202 (475)
++.+..++.+....+.....|.+ +||+||||+|||++|+++|+.+ ...++.++++++.. +|+|.
T Consensus 575 v~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~ 654 (852)
T TIGR03345 575 LEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGY 654 (852)
T ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccc
Confidence 33444444333333333346765 8999999999999999999997 45778888765421 24443
Q ss_pred hH-HHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceE
Q 011914 203 PA-KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281 (475)
Q Consensus 203 ~e-~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~V 281 (475)
.+ ..+. +.. ++..++||+|||||+..+ .+...|++++++....--.| ......+.+|
T Consensus 655 ~~~g~L~---~~v----~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~G--r~vd~~n~ii 712 (852)
T TIGR03345 655 GEGGVLT---EAV----RRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEG--REIDFKNTVI 712 (852)
T ss_pred cccchHH---HHH----HhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCC--cEEeccccEE
Confidence 22 1222 222 267789999999986532 35567788777432221111 1233478999
Q ss_pred EEecCCCC-----------------------------CCccccccCCCceEEEe-cCCHHHHHHHHHhhcC
Q 011914 282 IVTGNDFS-----------------------------TLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFR 322 (475)
Q Consensus 282 I~TTN~~~-----------------------------~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~ 322 (475)
|+|||... .+.|+|+. |++.+.+ ..+.++..+|+...+.
T Consensus 713 I~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 713 LLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMTVIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--ceeEEEeCCCCHHHHHHHHHHHHH
Confidence 99998521 14567777 8885444 4699999999876553
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.6e-10 Score=124.95 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=98.0
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc--------------------------eEEEecCccc
Q 011914 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELE 196 (475)
Q Consensus 143 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~--------------------------~i~vs~s~l~ 196 (475)
++..+++++.. -+.|..+||+||+|||||++|+++|+.++.. ++.++++..
T Consensus 21 i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~- 97 (584)
T PRK14952 21 VTEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH- 97 (584)
T ss_pred HHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc-
Confidence 33445555543 2578889999999999999999999997631 222322211
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 011914 197 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276 (475)
Q Consensus 197 s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~ 276 (475)
.....+|++-+.+...-......|+||||+|.+... ....|+..++ +..
T Consensus 98 -----~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A~NALLK~LE-------------Epp 146 (584)
T PRK14952 98 -----GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------------GFNALLKIVE-------------EPP 146 (584)
T ss_pred -----cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------HHHHHHHHHh-------------cCC
Confidence 123455665554431111455679999999977321 2344555444 556
Q ss_pred CCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC
Q 011914 277 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV 326 (475)
Q Consensus 277 ~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v 326 (475)
.++.+|++|+.++.|.++|++ |+..+-+ .++.++..+.++.++...++
T Consensus 147 ~~~~fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 147 EHLIFIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred CCeEEEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 678888888888999999998 7655554 57788888888888776554
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=8.5e-11 Score=133.19 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=101.2
Q ss_pred HHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc--------------------------eEEEecCccccCC
Q 011914 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELESGN 199 (475)
Q Consensus 146 i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~--------------------------~i~vs~s~l~s~~ 199 (475)
.+++++.. -+.++.+|||||+|||||++|+.+|+.+.+. ++.++....
T Consensus 26 ~L~~~i~~--~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~---- 99 (824)
T PRK07764 26 PLSTALDS--GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH---- 99 (824)
T ss_pred HHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc----
Confidence 34444432 2567889999999999999999999998641 222322111
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 011914 200 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279 (475)
Q Consensus 200 ~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V 279 (475)
.....||++-+.+...-......|+||||+|.+.. ...+.|+++++ +....+
T Consensus 100 --~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~a~NaLLK~LE-------------EpP~~~ 151 (824)
T PRK07764 100 --GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------QGFNALLKIVE-------------EPPEHL 151 (824)
T ss_pred --CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------HHHHHHHHHHh-------------CCCCCe
Confidence 01344555433332111146678999999998742 12345666555 556777
Q ss_pred eEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhc
Q 011914 280 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 337 (475)
Q Consensus 280 ~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 337 (475)
.+|++|+.++.|.+.|++ |+..+-+ .++.++..++|+.++..+++ +.+.+..++..
T Consensus 152 ~fIl~tt~~~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~ 210 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA 210 (824)
T ss_pred EEEEEeCChhhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888888888889999988 7765555 57888888888888876555 33444444333
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.3e-10 Score=126.25 Aligned_cols=147 Identities=13% Similarity=0.186 Sum_probs=97.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.+..+||+||||+|||++|+++|+.++.. ++.++++. ......+|++..
T Consensus 36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~ 109 (527)
T PRK14969 36 RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLD 109 (527)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHH
Confidence 567889999999999999999999998652 22222210 112345677766
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-......|+||||+|.+... . ...|+..++ +....+.+|++|++++.+.
T Consensus 110 ~~~~~p~~~~~kVvIIDEad~ls~~------------a-~naLLK~LE-------------epp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 110 NAQYAPTRGRFKVYIIDEVHMLSKS------------A-FNAMLKTLE-------------EPPEHVKFILATTDPQKIP 163 (527)
T ss_pred HHhhCcccCCceEEEEcCcccCCHH------------H-HHHHHHHHh-------------CCCCCEEEEEEeCChhhCc
Confidence 5531111345679999999976321 1 234555444 4456778888888889998
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhc
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 337 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 337 (475)
+.+++ |+..+-+ .|+.++..+.++.++..+++ +.+.+..++..
T Consensus 164 ~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~ 209 (527)
T PRK14969 164 VTVLS--RCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARA 209 (527)
T ss_pred hhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888 7755544 57888888888888766555 44444444443
No 107
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.4e-10 Score=128.94 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCe-EEEEEcCCCccHHHHHHHHHHHhC---CceEEEecCcccc------------CCCC
Q 011914 138 FMDKVVVHITKNFLNLPNVKVPL-ILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELES------------GNAG 201 (475)
Q Consensus 138 ~~d~~~~~i~k~~l~~~~~~~p~-glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~s~l~s------------~~~G 201 (475)
-++.+...+.+....+...+.|. .+||.||.|+|||.||+++|..+. ..++.+++|+... +|+|
T Consensus 499 AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVG 578 (786)
T COG0542 499 AVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVG 578 (786)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCce
Confidence 33344444445555555556665 578899999999999999999987 7899999977642 2454
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceE
Q 011914 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281 (475)
Q Consensus 202 e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~V 281 (475)
-.+. ..+-+|. ++...|||+||||++..+ .|...|++++|+-...-=.| ....-.+.+|
T Consensus 579 yeeG---G~LTEaV---Rr~PySViLlDEIEKAHp-------------dV~nilLQVlDdGrLTD~~G--r~VdFrNtiI 637 (786)
T COG0542 579 YEEG---GQLTEAV---RRKPYSVILLDEIEKAHP-------------DVFNLLLQVLDDGRLTDGQG--RTVDFRNTII 637 (786)
T ss_pred eccc---cchhHhh---hcCCCeEEEechhhhcCH-------------HHHHHHHHHhcCCeeecCCC--CEEecceeEE
Confidence 3221 1122221 266689999999997654 46788999888544433222 2344578999
Q ss_pred EEecCCC----------------------------CCCccccccCCCceEEEe--cCCHHHHHHHHHhhcC
Q 011914 282 IVTGNDF----------------------------STLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR 322 (475)
Q Consensus 282 I~TTN~~----------------------------~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~ 322 (475)
|+|||-- ....|+|+. |+|.+|. ..+.+...+|+..++.
T Consensus 638 ImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 638 IMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred EEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 9999832 123667777 9997766 3588888888876665
No 108
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.21 E-value=7.1e-11 Score=120.46 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=98.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccC--CCCChHHHH----------HHHHHHHHHHHHhCCceeE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAKLI----------RQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~--~~Ge~e~~I----------r~~f~~A~~~~~~~~p~IL 226 (475)
.+.|||.||||||||++++.+|+.++.+++.+++....+. +.|...-.+ ...+-.| ...+++|
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g~il 138 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHNVAL 138 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCCeEE
Confidence 3569999999999999999999999999999988665544 455432111 1122333 2457899
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcccc-CCCCCceEEEecCCCC------------CCcc
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGNDFS------------TLYA 293 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~-~~~~~V~VI~TTN~~~------------~Ld~ 293 (475)
++||+|..-+ .+...|..+++....+.+++.... ...+...||+|+|... .+++
T Consensus 139 llDEin~a~p-------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 139 CFDEYDAGRP-------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred EechhhccCH-------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 9999997633 233556666664444555432111 2335677899999854 4688
Q ss_pred ccccCCCceEEEe--cCCHHHHHHHHHhhc
Q 011914 294 PLIRDGRMEKFYW--APTREDRIGVCSGIF 321 (475)
Q Consensus 294 aLlR~GRfd~~i~--~P~~eeR~~Il~~~l 321 (475)
+++. ||-..+. .|+.++-.+|+....
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 8888 8877655 699999999987654
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.4e-10 Score=125.28 Aligned_cols=158 Identities=9% Similarity=0.114 Sum_probs=100.7
Q ss_pred HHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCC
Q 011914 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGN 199 (475)
Q Consensus 144 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~ 199 (475)
+..+++++... +.+..+||+||||||||++|+++|+.+... ++.+++..-
T Consensus 25 ~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~---- 98 (624)
T PRK14959 25 KAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASN---- 98 (624)
T ss_pred HHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccc----
Confidence 34444544432 457799999999999999999999998652 333332110
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 011914 200 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279 (475)
Q Consensus 200 ~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V 279 (475)
.....+|.+-+.+...-......||||||+|.+... ....|+..++ +...++
T Consensus 99 --~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~-------------a~naLLk~LE-------------EP~~~~ 150 (624)
T PRK14959 99 --RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE-------------AFNALLKTLE-------------EPPARV 150 (624)
T ss_pred --cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH-------------HHHHHHHHhh-------------ccCCCE
Confidence 112334443332221111455679999999977321 1244555444 445678
Q ss_pred eEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhc
Q 011914 280 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 337 (475)
Q Consensus 280 ~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 337 (475)
.+|++||.+..+.+.|++ |+..+-+ .++.++...+++.++...+ ++.+.+..++..
T Consensus 151 ifILaTt~~~kll~TI~S--Rcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 151 TFVLATTEPHKFPVTIVS--RCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred EEEEecCChhhhhHHHHh--hhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888889999999988888 7765444 4788888888888777654 555555555543
No 110
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.21 E-value=1.4e-10 Score=109.26 Aligned_cols=145 Identities=11% Similarity=0.082 Sum_probs=95.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+|||||||+|||++|+.+++.+... +..+.... .. -....++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHH
Confidence 567889999999999999999999996431 22222110 01 12345666666
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-......||+|||+|.+... ....|+..++ +..+...+|++||.+..|.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLE-------------EPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChHhCh
Confidence 5542211456779999999877432 1234555444 4455677888888889999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCChHHHHHHHhcC
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKEDIVKLVDTF 338 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~ 338 (475)
+++++ |+..+-. .|+.++..+++... +++.+.+..++...
T Consensus 141 ~~i~s--r~~~~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~~~~ 181 (188)
T TIGR00678 141 PTIRS--RCQVLPFPPLSEEALLQWLIRQ----GISEEAAELLLALA 181 (188)
T ss_pred HHHHh--hcEEeeCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHc
Confidence 99998 7754333 58999988888776 46766666555543
No 111
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.21 E-value=6.6e-12 Score=117.37 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=84.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCC----ceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~----~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
-..+||.||+|||||.+|+++|+.+.. +++.++++++... ++.+..+..++..+..........||||||||++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 356899999999999999999999996 9999999988651 0111222233332211111222339999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCC
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~L 291 (475)
.++. ....++....|...|++++++-+..--.| ......++++|+|||--...
T Consensus 81 ~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d~~g--~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 81 HPSN--SGGADVSGEGVQNSLLQLLEGGTLTDSYG--RTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp SHTT--TTCSHHHHHHHHHHHHHHHHHSEEEETTC--CEEEGTTEEEEEEESSSTHH
T ss_pred cccc--cccchhhHHHHHHHHHHHhcccceecccc--eEEEeCCceEEEecccccch
Confidence 8862 23456667788899999887332221111 22446889999999976543
No 112
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.20 E-value=1.3e-10 Score=130.26 Aligned_cols=146 Identities=20% Similarity=0.242 Sum_probs=98.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccccC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~-~~~p~ILfIDEiDal~~~ 237 (475)
...++||||||||||++|+++|+.++.+|+.+++... + .+.++..+..+..... .....+|||||+|.+...
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~ 124 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA 124 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH
Confidence 3468999999999999999999999999888876521 1 2345566665543332 345779999999976321
Q ss_pred CCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEec--CCCCCCccccccCCCceEEEe-cCCHHHHH
Q 011914 238 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRI 314 (475)
Q Consensus 238 r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT--N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~ 314 (475)
....|+..++ ...+.+|++| |....+++++++ |+..+.+ .++.+++.
T Consensus 125 -------------qQdaLL~~lE---------------~g~IiLI~aTTenp~~~l~~aL~S--R~~v~~l~pLs~edi~ 174 (725)
T PRK13341 125 -------------QQDALLPWVE---------------NGTITLIGATTENPYFEVNKALVS--RSRLFRLKSLSDEDLH 174 (725)
T ss_pred -------------HHHHHHHHhc---------------CceEEEEEecCCChHhhhhhHhhc--cccceecCCCCHHHHH
Confidence 1234444332 2445666644 444678999998 6544333 57899999
Q ss_pred HHHHhhcC-------C--CCCChHHHHHHHhcCCCC
Q 011914 315 GVCSGIFR-------T--DNVPKEDIVKLVDTFPGQ 341 (475)
Q Consensus 315 ~Il~~~l~-------~--~~v~~~~l~~l~~~~~g~ 341 (475)
.|++.++. . ..++.+.+..++...+|.
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 99998775 2 346677777777765443
No 113
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=3.7e-10 Score=122.10 Aligned_cols=146 Identities=12% Similarity=0.184 Sum_probs=96.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC-----------------------ceEEEecCccccCCCCChHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------NPIMMSAGELESGNAGEPAKLIRQRYRE 213 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~-----------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~ 213 (475)
+.|..+|||||||||||++|+++|+.+.. .++.+++.. ......+|++...
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~ 107 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREK 107 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHH
Confidence 56778899999999999999999999753 133344321 1123456665444
Q ss_pred HHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcc
Q 011914 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (475)
Q Consensus 214 A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~ 293 (475)
+...--...+.||||||+|.+.. .....|+..++ +...++.+|++||.+..+.+
T Consensus 108 ~~~~p~~~~~kVVIIDEad~ls~-------------~a~naLLk~LE-------------ep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAHMMSK-------------SAFNALLKTLE-------------EPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred HhhccccCCCeEEEEECccccCH-------------HHHHHHHHHHH-------------hCCCCEEEEEEcCChhhCCh
Confidence 43111135677999999985521 11233444333 44566778888899999999
Q ss_pred ccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHh
Q 011914 294 PLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVD 336 (475)
Q Consensus 294 aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~ 336 (475)
.+++ |+..+-+ .|+.++....++.++...++ +.+.+..++.
T Consensus 162 ~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~ 205 (504)
T PRK14963 162 TILS--RTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVAR 205 (504)
T ss_pred HHhc--ceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9988 7765544 58999999999888876555 4444444443
No 114
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.20 E-value=2.7e-10 Score=116.96 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=99.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC------------------------ceEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~------------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+|||||||+|||++|+++++.+.. .++.+++.. ......++++++
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~ 107 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILD 107 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHH
Confidence 56788999999999999999999999643 233333321 122345677777
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-......||+|||+|.+... .. ..|+..++ ....++.+|++||+++.+.
T Consensus 108 ~~~~~p~~~~~~vviidea~~l~~~------------~~-~~Ll~~le-------------~~~~~~~lIl~~~~~~~l~ 161 (355)
T TIGR02397 108 NVKYAPSSGKYKVYIIDEVHMLSKS------------AF-NALLKTLE-------------EPPEHVVFILATTEPHKIP 161 (355)
T ss_pred HHhcCcccCCceEEEEeChhhcCHH------------HH-HHHHHHHh-------------CCccceeEEEEeCCHHHHH
Confidence 6541111344569999999876321 12 33444333 3345677888889999888
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhcCC
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFP 339 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~ 339 (475)
+++++ |+..+-+ .|+.++..++++.++...+ ++.+.+..+++...
T Consensus 162 ~~l~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 162 ATILS--RCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAAD 209 (355)
T ss_pred HHHHh--heeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99988 7765444 5889999999998887654 55566666665543
No 115
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1.6e-10 Score=126.97 Aligned_cols=157 Identities=11% Similarity=0.183 Sum_probs=103.0
Q ss_pred HHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCC
Q 011914 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNA 200 (475)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~ 200 (475)
..+++.+.. -+.|..+|||||+|+|||++|+++|+.+... ++.+++..
T Consensus 26 ~~L~~~i~~--~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s------ 97 (576)
T PRK14965 26 RTLQNAIDT--GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS------ 97 (576)
T ss_pred HHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC------
Confidence 334444433 2678889999999999999999999997542 33333221
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 011914 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 280 (475)
Q Consensus 201 Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~ 280 (475)
......||++...+...--.....|+||||+|.+... ....|+..++ +..+++.
T Consensus 98 ~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~naLLk~LE-------------epp~~~~ 151 (576)
T PRK14965 98 NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AFNALLKTLE-------------EPPPHVK 151 (576)
T ss_pred ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HHHHHHHHHH-------------cCCCCeE
Confidence 1123456776665531111344569999999866321 2245555444 5567788
Q ss_pred EEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhc
Q 011914 281 IIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 337 (475)
Q Consensus 281 VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 337 (475)
+|++||.++.|.+.|++ |+..+-+ .++.++....+..++...+ ++.+.+..++..
T Consensus 152 fIl~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~ 209 (576)
T PRK14965 152 FIFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARK 209 (576)
T ss_pred EEEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 88888999999999998 7765555 5778888888887777655 445555555444
No 116
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.19 E-value=1.5e-10 Score=125.95 Aligned_cols=163 Identities=17% Similarity=0.189 Sum_probs=93.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc-------cCCCCChHHHH---HHHHHHH--
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE-------SGNAGEPAKLI---RQRYREA-- 214 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~-------s~~~Ge~e~~I---r~~f~~A-- 214 (475)
..|..+||+||||||||++|+++.+.+ +.+|+.+++.... ....|....-+ ...|..+
T Consensus 84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~ 163 (531)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGI 163 (531)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCc
Confidence 345789999999999999999998752 3578888876321 11111100000 0000000
Q ss_pred ----HHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCc-cc---------------cC
Q 011914 215 ----ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-YN---------------QE 274 (475)
Q Consensus 215 ----~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~-~~---------------~~ 274 (475)
...+......+|||||++.+... ....|+..+++. .+.+.+. |. ..
T Consensus 164 ~~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (531)
T TIGR02902 164 PQPKPGAVTRAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDR-KVFLDSAYYNSENPNIPSHIHDIFQNG 229 (531)
T ss_pred ccccCchhhccCCcEEEEechhhCCHH-------------HHHHHHHHHHhC-eeeeccccccccCcccccchhhhcccC
Confidence 00111344679999999987432 223444444321 1111110 00 00
Q ss_pred CCCC-ceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHH
Q 011914 275 ENPR-VPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLV 335 (475)
Q Consensus 275 ~~~~-V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~ 335 (475)
...+ .+|++|||+++.|++++++ |+..+.+ .++.+++.+|++.++++.+ ++.+.+..+.
T Consensus 230 ~~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~ 292 (531)
T TIGR02902 230 LPADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIV 292 (531)
T ss_pred cccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 1122 3445577899999999999 8876666 4678999999999887654 4445555443
No 117
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.19 E-value=5e-11 Score=106.39 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=73.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHH--------HHHH-hCCceeEEeccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA--------DIIK-KGKMCCLFINDL 231 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~--------~~~~-~~~p~ILfIDEi 231 (475)
.|+|+||||||||++|+.+|+.++.+++.++++.... .+.+ -..+.... .+.+ ...+++++|||+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~-----~~dl-~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTT-----EEDL-IGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTST-----HHHH-HCEEET-TTTTCEEE-CCCTTHHEEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccc-----cccc-eeeeeecccccccccccccccccceeEEEECCc
Confidence 4899999999999999999999999999888764321 1111 00000000 0000 126889999999
Q ss_pred cccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCC------CceEEEecCCCC----CCccccccCCCc
Q 011914 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP------RVPIIVTGNDFS----TLYAPLIRDGRM 301 (475)
Q Consensus 232 Dal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~------~V~VI~TTN~~~----~Ld~aLlR~GRf 301 (475)
+..-+ .+...|+.++++-......+........ +..||+|+|... .++++|+| ||
T Consensus 75 n~a~~-------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 75 NRAPP-------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp GG--H-------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ccCCH-------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 96532 4556666666643333222221111111 488999999998 89999999 87
No 118
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.18 E-value=3.7e-10 Score=128.87 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHhhhcCCCCCCCe-EEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcccc------------CCC
Q 011914 137 AFMDKVVVHITKNFLNLPNVKVPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES------------GNA 200 (475)
Q Consensus 137 ~~~d~~~~~i~k~~l~~~~~~~p~-glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s------------~~~ 200 (475)
..+..+...+.+....+.....|. .+||+||+|||||++|+++|+.+ +.+++.++.+++.. +|+
T Consensus 516 ~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyv 595 (821)
T CHL00095 516 EAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYV 595 (821)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCccc
Confidence 334444444444444444445565 48999999999999999999997 46788888776532 133
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCce
Q 011914 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 280 (475)
Q Consensus 201 Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~ 280 (475)
|-.+. ..+....+ ....+||+|||+|++.+ .+...|++++++....--.|. .....+.+
T Consensus 596 g~~~~--~~l~~~~~----~~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g~--~v~~~~~i 654 (821)
T CHL00095 596 GYNEG--GQLTEAVR----KKPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKGR--TIDFKNTL 654 (821)
T ss_pred CcCcc--chHHHHHH----hCCCeEEEECChhhCCH-------------HHHHHHHHHhccCceecCCCc--EEecCceE
Confidence 32211 12222222 55568999999997633 355778887774333322221 23357889
Q ss_pred EEEecCCCCC-------------------------------------CccccccCCCceEEEe--cCCHHHHHHHHHhhc
Q 011914 281 IIVTGNDFST-------------------------------------LYAPLIRDGRMEKFYW--APTREDRIGVCSGIF 321 (475)
Q Consensus 281 VI~TTN~~~~-------------------------------------Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l 321 (475)
||+|||.... +.|+|+. |+|.++. ..+.++..+|+...+
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 9999985321 2345666 8977666 368888888887655
Q ss_pred C
Q 011914 322 R 322 (475)
Q Consensus 322 ~ 322 (475)
.
T Consensus 733 ~ 733 (821)
T CHL00095 733 K 733 (821)
T ss_pred H
Confidence 4
No 119
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.17 E-value=8.6e-11 Score=113.99 Aligned_cols=187 Identities=22% Similarity=0.280 Sum_probs=103.9
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccc
Q 011914 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELE 196 (475)
Q Consensus 122 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~ 196 (475)
+|+|+|.+.+ + . .+...+.+++....++. .-..++||||+|+|||+|..++++++ +..++++++.++.
T Consensus 4 ~~tFdnfv~g----~-~-N~~a~~~~~~ia~~~~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~ 76 (219)
T PF00308_consen 4 KYTFDNFVVG----E-S-NELAYAAAKAIAENPGE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI 76 (219)
T ss_dssp T-SCCCS--T----T-T-THHHHHHHHHHHHSTTT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH
T ss_pred CCccccCCcC----C-c-HHHHHHHHHHHHhcCCC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH
Confidence 4667776433 1 1 13344455555444443 22348999999999999999999883 5678888876654
Q ss_pred cCCCCChHHHHH----HHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccc
Q 011914 197 SGNAGEPAKLIR----QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272 (475)
Q Consensus 197 s~~~Ge~e~~Ir----~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~ 272 (475)
..+. ..++ .-|... -....+|+|||++.+.++. .....|..+.+ ..
T Consensus 77 ~~~~----~~~~~~~~~~~~~~-----~~~~DlL~iDDi~~l~~~~-----------~~q~~lf~l~n----------~~ 126 (219)
T PF00308_consen 77 REFA----DALRDGEIEEFKDR-----LRSADLLIIDDIQFLAGKQ-----------RTQEELFHLFN----------RL 126 (219)
T ss_dssp HHHH----HHHHTTSHHHHHHH-----HCTSSEEEEETGGGGTTHH-----------HHHHHHHHHHH----------HH
T ss_pred HHHH----HHHHcccchhhhhh-----hhcCCEEEEecchhhcCch-----------HHHHHHHHHHH----------HH
Confidence 2110 0010 011111 3456799999999886531 11233333333 00
Q ss_pred cCCCCCceEEEecC-CCCC---CccccccCCCceE--EEe--cCCHHHHHHHHHhhcCCC--CCChHHHHHHHhcCCCCc
Q 011914 273 QEENPRVPIIVTGN-DFST---LYAPLIRDGRMEK--FYW--APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQS 342 (475)
Q Consensus 273 ~~~~~~V~VI~TTN-~~~~---Ld~aLlR~GRfd~--~i~--~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~~g~~ 342 (475)
...+..+|+|++ .|.. +++.|.+ ||.. .+. .|+.+.|.+|++.+.... .++.+.+.-++..++..-
T Consensus 127 --~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 127 --IESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDV 202 (219)
T ss_dssp --HHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSH
T ss_pred --HhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCH
Confidence 013345677664 3443 5667877 7755 233 599999999999877653 466667777777766554
Q ss_pred hhhHHHH
Q 011914 343 IDFFGAL 349 (475)
Q Consensus 343 i~f~gal 349 (475)
-+..|++
T Consensus 203 r~L~~~l 209 (219)
T PF00308_consen 203 RELEGAL 209 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 120
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.8e-10 Score=119.35 Aligned_cols=142 Identities=20% Similarity=0.295 Sum_probs=107.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc-CCCCCh-HHHHHHHHHHHHHHHHhCCceeEEeccccccccCC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s-~~~Ge~-e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r 238 (475)
.+||.||.|+|||+||+.+|+-++++|...+|.+|.. +|+||. +..|.+++..|.--.++.+-.|+||||+|++...-
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 5888999999999999999999999999999999865 799986 66788888888666667788899999999998543
Q ss_pred C-CCcccchhhHHHHHHHHhhhcCCCcccCCCccc---------cCCCCCceEEEecCCCCCCccccccCCCceEEEe
Q 011914 239 G-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN---------QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 306 (475)
Q Consensus 239 ~-~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~---------~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~ 306 (475)
. -....++...-|.+.|+.|++ -+.|.++..-. .....++++|+.. -+..||.-+-| |.+....
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasG-AF~~Ldk~I~r--R~~d~sl 381 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASG-AFVGLDKIISR--RLDDKSL 381 (564)
T ss_pred ccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccceEEEecc-cccchHHHHHH--hhcchhc
Confidence 2 233457778899999999886 56666653311 0112344444433 44568888888 8877665
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=9.7e-10 Score=117.49 Aligned_cols=152 Identities=13% Similarity=0.181 Sum_probs=98.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc-------------------------eEEEecCccccCCCCChHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAGEPAKLIRQRY 211 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~-------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f 211 (475)
+.|..+|||||||+|||++|+++|+.+... ++.+++.. ..| -..++++-
T Consensus 37 ~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~----~~g--id~ir~i~ 110 (451)
T PRK06305 37 RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGAS----HRG--IEDIRQIN 110 (451)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccc----cCC--HHHHHHHH
Confidence 567889999999999999999999996432 22232211 111 23444433
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCC
Q 011914 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (475)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~L 291 (475)
+............||||||+|.+... ....|+..++ +....+.+|++||.+..|
T Consensus 111 ~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk~lE-------------ep~~~~~~Il~t~~~~kl 164 (451)
T PRK06305 111 ETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLKTLE-------------EPPQHVKFFLATTEIHKI 164 (451)
T ss_pred HHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHHHhh-------------cCCCCceEEEEeCChHhc
Confidence 32221111466789999999876321 2245555444 445677788888888999
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhcCCCCch
Q 011914 292 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSI 343 (475)
Q Consensus 292 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~g~~i 343 (475)
.++|++ |+..+-+ .++.++..+.+..++...+ ++.+.+..++... +.++
T Consensus 165 ~~tI~s--Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s-~gdl 216 (451)
T PRK06305 165 PGTILS--RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAA-QGSL 216 (451)
T ss_pred chHHHH--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCH
Confidence 999998 8866555 5788888888888776554 5555555555443 3344
No 122
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=7.7e-10 Score=114.83 Aligned_cols=153 Identities=13% Similarity=0.173 Sum_probs=98.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc----------e--EEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCce
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN----------P--IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 224 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~----------~--i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ 224 (475)
+.|..+|||||||+|||++|+++++.+... + +.++.. .......++.+++.+...--...+.
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~k 110 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYK 110 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc------cCCCHHHHHHHHHHHhhccccCCcE
Confidence 567899999999999999999999997542 1 111111 1122356777777653111134567
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEE
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~ 304 (475)
||+|||+|.+... . ...|+..++ +......+|++|+....+.+++.+ |+..+
T Consensus 111 iviIDE~~~l~~~------------~-~~~ll~~le-------------~~~~~~~~Il~~~~~~kl~~~l~s--r~~~v 162 (367)
T PRK14970 111 IYIIDEVHMLSSA------------A-FNAFLKTLE-------------EPPAHAIFILATTEKHKIIPTILS--RCQIF 162 (367)
T ss_pred EEEEeChhhcCHH------------H-HHHHHHHHh-------------CCCCceEEEEEeCCcccCCHHHHh--cceeE
Confidence 9999999866321 1 234444333 233455677778788899999988 66443
Q ss_pred Ee-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhcCCCCchh
Q 011914 305 YW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 305 i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~g~~i~ 344 (475)
-+ .|+.++...++...+...+ ++.+.+..++... +.++.
T Consensus 163 ~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~-~gdlr 204 (367)
T PRK14970 163 DFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKA-DGALR 204 (367)
T ss_pred ecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC-CCCHH
Confidence 23 5788888888887777655 5666666666653 34544
No 123
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.14 E-value=4.1e-10 Score=110.28 Aligned_cols=147 Identities=13% Similarity=0.146 Sum_probs=89.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhC---CceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
..++||||||||||+|++++++++. ..+.+++....... ...+.+.+. . ..+|+|||++.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~-----~~~~~~~~~-------~--~dlliiDdi~~~~~ 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF-----VPEVLEGME-------Q--LSLVCIDNIECIAG 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh-----hHHHHHHhh-------h--CCEEEEeChhhhcC
Confidence 4799999999999999999999854 44555555432210 011111111 1 35899999998754
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecC-CCCC---CccccccCCCce--EEEe--cC
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFST---LYAPLIRDGRME--KFYW--AP 308 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN-~~~~---Ld~aLlR~GRfd--~~i~--~P 308 (475)
+.. ....+...+..+.+ ..+..+|+||+ .|.. +.+.|++ |+. ..+. .|
T Consensus 112 ~~~-------~~~~lf~l~n~~~e---------------~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~ 167 (235)
T PRK08084 112 DEL-------WEMAIFDLYNRILE---------------SGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPL 167 (235)
T ss_pred CHH-------HHHHHHHHHHHHHH---------------cCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCC
Confidence 311 11233333333222 23345666665 4444 5788999 884 3333 58
Q ss_pred CHHHHHHHHHhhcCC--CCCChHHHHHHHhcCCCCchh
Q 011914 309 TREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 309 ~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g~~i~ 344 (475)
+.++|.++++..... -.++.+.+.-++..+.+.--.
T Consensus 168 ~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~ 205 (235)
T PRK08084 168 SDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRT 205 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHH
Confidence 999999999875544 456677777777776655444
No 124
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.14 E-value=5.7e-10 Score=95.94 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=78.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCc---eEEEecCccccC--------------CCCChHHHHHHHHHHHHHHHHhC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG--------------NAGEPAKLIRQRYREAADIIKKG 221 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~---~i~vs~s~l~s~--------------~~Ge~e~~Ir~~f~~A~~~~~~~ 221 (475)
+..++|+||||||||++++.+|..+... ++.+++...... ........++..+..+. ..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR----KL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH----hc
Confidence 4679999999999999999999998775 777777654321 22334555666666664 66
Q ss_pred CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC-CCCCccccccCCC
Q 011914 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FSTLYAPLIRDGR 300 (475)
Q Consensus 222 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~-~~~Ld~aLlR~GR 300 (475)
.+.+|||||++.+......... ........+. ......+..+|+|+|. ....+..+.+ |
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~---~~~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~~~~~~--~ 137 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALL---LLLEELRLLL---------------LLKSEKNLTVILTTNDEKDLGPALLRR--R 137 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHH---HhhhhhHHHH---------------HHHhcCCCEEEEEeCCCccCchhhhhh--c
Confidence 6899999999988654210000 0000000000 0123567789999997 3344444555 7
Q ss_pred ceEEEec
Q 011914 301 MEKFYWA 307 (475)
Q Consensus 301 fd~~i~~ 307 (475)
++..+.+
T Consensus 138 ~~~~~~~ 144 (148)
T smart00382 138 FDRRIVL 144 (148)
T ss_pred cceEEEe
Confidence 7777663
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=7.4e-10 Score=119.32 Aligned_cols=147 Identities=17% Similarity=0.248 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.+..+|||||||+|||++|+.+|+.++.. ++.++++. ......+|.+.+
T Consensus 36 ~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~ 109 (486)
T PRK14953 36 RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRD 109 (486)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHH
Confidence 567889999999999999999999997631 12222110 011334555555
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-....+.|++|||+|.+... ....|+..++ +....+.+|++|+.++.++
T Consensus 110 ~~~~~P~~~~~KVvIIDEad~Lt~~-------------a~naLLk~LE-------------epp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 110 AVSYTPIKGKYKVYIIDEAHMLTKE-------------AFNALLKTLE-------------EPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred HHHhCcccCCeeEEEEEChhhcCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEECCHHHHH
Confidence 4431111456679999999966321 1234444343 3445566777777888899
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCC--hHHHHHHHhc
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDT 337 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~~~ 337 (475)
+++++ |+..+.+ .|+.++....++.++...++. .+.+..++..
T Consensus 164 ~tI~S--Rc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~ 209 (486)
T PRK14953 164 PTILS--RCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQA 209 (486)
T ss_pred HHHHH--hceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99888 7765444 578999999999888765544 3555555544
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.13 E-value=3.9e-10 Score=120.44 Aligned_cols=194 Identities=13% Similarity=0.146 Sum_probs=115.9
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccc
Q 011914 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELE 196 (475)
Q Consensus 122 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~ 196 (475)
.|+|++...+ +. .+.....++.+...++. ....++|||++|+|||+|++++++++ +..++++++.++.
T Consensus 111 ~~tFdnFv~g----~~--n~~A~~aa~~~a~~~~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIG----SS--NEQAFIAVQTVSKNPGI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCC----Cc--HHHHHHHHHHHHhCcCc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4566665433 21 12233444554444442 23569999999999999999999964 4677888887665
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCC
Q 011914 197 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276 (475)
Q Consensus 197 s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~ 276 (475)
..+...-.... ..+.+.++ +-....+|+|||++.+.++.. ++ ..+..++..+.+
T Consensus 184 ~~~~~~l~~~~-~~~~~~~~--~~~~~dvLiIDDiq~l~~k~~--~~-----e~lf~l~N~~~~---------------- 237 (450)
T PRK14087 184 RKAVDILQKTH-KEIEQFKN--EICQNDVLIIDDVQFLSYKEK--TN-----EIFFTIFNNFIE---------------- 237 (450)
T ss_pred HHHHHHHHHhh-hHHHHHHH--HhccCCEEEEeccccccCCHH--HH-----HHHHHHHHHHHH----------------
Confidence 33221110000 11111110 124577999999998765421 11 123333322221
Q ss_pred CCceEEEecCCCC----CCccccccCCCceEEEe----cCCHHHHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchh
Q 011914 277 PRVPIIVTGNDFS----TLYAPLIRDGRMEKFYW----APTREDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 277 ~~V~VI~TTN~~~----~Ld~aLlR~GRfd~~i~----~P~~eeR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~ 344 (475)
.+..||+|+|.+- .+++.|.+ ||..-+. .|+.++|.+|++..+... .++.+.+.-++..+.|..-.
T Consensus 238 ~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~ 315 (450)
T PRK14087 238 NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRK 315 (450)
T ss_pred cCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHH
Confidence 2336788887642 35677888 8865333 599999999999888653 46777888888887776656
Q ss_pred hHHHHH
Q 011914 345 FFGALR 350 (475)
Q Consensus 345 f~gal~ 350 (475)
..|++.
T Consensus 316 L~gaL~ 321 (450)
T PRK14087 316 IKGSVS 321 (450)
T ss_pred HHHHHH
Confidence 555443
No 127
>PRK05642 DNA replication initiation factor; Validated
Probab=99.13 E-value=6.6e-10 Score=108.79 Aligned_cols=160 Identities=11% Similarity=0.131 Sum_probs=94.6
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH
Q 011914 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219 (475)
Q Consensus 143 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~ 219 (475)
....++++....+......++||||+|+|||+|++++++++ +..+++++..++... ...+.+..
T Consensus 29 a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~----- 95 (234)
T PRK05642 29 ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNL----- 95 (234)
T ss_pred HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhh-----
Confidence 44455544332211234678999999999999999999863 677888887766531 01111111
Q ss_pred hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC-CCC---Ccccc
Q 011914 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FST---LYAPL 295 (475)
Q Consensus 220 ~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~-~~~---Ld~aL 295 (475)
....+|+|||++.+.++.. .+ ..+..++..+. ..+..+|+|++. |.. +.+.|
T Consensus 96 -~~~d~LiiDDi~~~~~~~~--~~-----~~Lf~l~n~~~----------------~~g~~ilits~~~p~~l~~~~~~L 151 (234)
T PRK05642 96 -EQYELVCLDDLDVIAGKAD--WE-----EALFHLFNRLR----------------DSGRRLLLAASKSPRELPIKLPDL 151 (234)
T ss_pred -hhCCEEEEechhhhcCChH--HH-----HHHHHHHHHHH----------------hcCCEEEEeCCCCHHHcCccCccH
Confidence 1235899999998755421 01 12333222211 223345665543 433 36788
Q ss_pred ccCCCceE--EE--ecCCHHHHHHHHHhhcCC--CCCChHHHHHHHhcCCCC
Q 011914 296 IRDGRMEK--FY--WAPTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQ 341 (475)
Q Consensus 296 lR~GRfd~--~i--~~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g~ 341 (475)
++ ||.. .+ ..|+.++|.+|++..... -.++.+.+.-++..+.+.
T Consensus 152 ~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 152 KS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred HH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 88 8743 23 258999999999954443 356666777777765544
No 128
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=4.5e-10 Score=122.65 Aligned_cols=147 Identities=15% Similarity=0.211 Sum_probs=98.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC------------------------ceEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~------------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+||+||||+|||++|+++|+.+.+ .++.+++.. . -....+|.+.+
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas----~--igVd~IReIi~ 109 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS----N--NGVDEIRNIID 109 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc----c--cCHHHHHHHHH
Confidence 56789999999999999999999999743 222232221 0 12344666666
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...--.....|++|||+|.+... ....|+..++ ++...+.+|++|+.+..|.
T Consensus 110 ~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKtLE-------------EPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 110 NINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKTLE-------------EPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred HHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHHHH-------------hCCCcEEEEEECCChHhhh
Confidence 5531111344569999999976321 2245655444 4456777888888899999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhc
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 337 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 337 (475)
+.+++ |+..+-+ .|+.++....++..+...+ ++.+.+..++..
T Consensus 164 ~TI~S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~l 209 (605)
T PRK05896 164 LTIIS--RCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADL 209 (605)
T ss_pred HHHHh--hhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99998 7765544 5788898888888776544 566655555544
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=6.5e-10 Score=123.59 Aligned_cols=153 Identities=12% Similarity=0.209 Sum_probs=99.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEE---EecCcc----------c--cCCCCChHHHHHHHHHHHHHHHHhC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM---MSAGEL----------E--SGNAGEPAKLIRQRYREAADIIKKG 221 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~---vs~s~l----------~--s~~~Ge~e~~Ir~~f~~A~~~~~~~ 221 (475)
+.+..+|||||+|+|||++|+++|+.+.+.--. -.|+.+ . ..........||++.+.+...--.+
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g 117 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS 117 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC
Confidence 567889999999999999999999997542100 000000 0 0000012455777776654222245
Q ss_pred CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCc
Q 011914 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 301 (475)
Q Consensus 222 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRf 301 (475)
...|++|||+|.+... ....|+..++ ++...+.+|++|+.++.|.+.+++ |+
T Consensus 118 ~~KV~IIDEa~~LT~~-------------A~NALLKtLE-------------EPP~~tifILaTte~~KLl~TI~S--Rc 169 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS-------------AFNALLKTLE-------------EPPKHVIFILATTEVHKIPLTILS--RV 169 (725)
T ss_pred CCEEEEEEChhhCCHH-------------HHHHHHHHhh-------------cCCCceEEEEEcCChhhhhHHHHh--hc
Confidence 6779999999976321 2345555444 455677788888899999999998 88
Q ss_pred eEEEe-cCCHHHHHHHHHhhcCCCCCC--hHHHHHHHhc
Q 011914 302 EKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDT 337 (475)
Q Consensus 302 d~~i~-~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~~~ 337 (475)
..+-+ .|+.++..+.++..+...++. .+.+..++..
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~l 208 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKL 208 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 65544 578899988888877765544 3344444443
No 130
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.12 E-value=2.8e-10 Score=120.33 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCc-------eEEEec----CccccCCCCC--hHHHHHHHHHHHHHHHH--hCCc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-------PIMMSA----GELESGNAGE--PAKLIRQRYREAADIIK--KGKM 223 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~-------~i~vs~----s~l~s~~~Ge--~e~~Ir~~f~~A~~~~~--~~~p 223 (475)
.+.++|+||||||||++|+.+|..++.. ++.++. ..+..++.-. .-.....+|.++...++ ...|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4579999999999999999999987531 122221 1222222111 00111123322222222 2468
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCC-----cccC-----CCccccCCCCCceEEEecCCCC----
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-----NVQL-----PGMYNQEENPRVPIIVTGNDFS---- 289 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~-----~v~l-----dg~~~~~~~~~V~VI~TTN~~~---- 289 (475)
++||||||+..-.. .+...++.+++.-. .+.+ ++... .-..++.||+|.|..+
T Consensus 274 ~vliIDEINRani~------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f-~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRANLS------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERF-YVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccCHH------------Hhhhhhhhhccccccccccceeeeccccccccc-cCCCCeEEEEecCccccchh
Confidence 99999999865321 22233333333110 0111 00000 2347899999999988
Q ss_pred CCccccccCCCceEEEecCCH
Q 011914 290 TLYAPLIRDGRMEKFYWAPTR 310 (475)
Q Consensus 290 ~Ld~aLlR~GRfd~~i~~P~~ 310 (475)
.+|.||+| ||..+-..|+.
T Consensus 341 ~lD~AlrR--RF~fi~i~p~~ 359 (459)
T PRK11331 341 VVDYALRR--RFSFIDIEPGF 359 (459)
T ss_pred hccHHHHh--hhheEEecCCC
Confidence 79999999 88554444643
No 131
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.11 E-value=1e-09 Score=119.69 Aligned_cols=156 Identities=21% Similarity=0.354 Sum_probs=95.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH----hCCceeEEeccccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLFINDLDAGA 235 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~----~~~p~ILfIDEiDal~ 235 (475)
+++||+||||-|||+||+.||++.|..++.|++++-. +...++.....|..+-. ..+|.||+|||||-..
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 8999999999999999999999999999999998643 23445544444433332 3789999999999432
Q ss_pred cCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcccc---------CCCCCceEEEecCCCCCCccccccCCC-ceEEE
Q 011914 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ---------EENPRVPIIVTGNDFSTLYAPLIRDGR-MEKFY 305 (475)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~---------~~~~~V~VI~TTN~~~~Ld~aLlR~GR-fd~~i 305 (475)
+....+++.++. .+..+.-|.-.. ...-..||||.+|+ |+.+-+|+-| |-..+
T Consensus 401 -------------~~~Vdvilslv~-a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 401 -------------RAAVDVILSLVK-ATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPFAEII 463 (877)
T ss_pred -------------HHHHHHHHHHHH-hhcchhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccceEEE
Confidence 122334444433 111122222000 01134689999998 4555555554 44445
Q ss_pred e-cC-CHHHHHHHHHhhcCCC--CCChHHHHHHHhcC
Q 011914 306 W-AP-TREDRIGVCSGIFRTD--NVPKEDIVKLVDTF 338 (475)
Q Consensus 306 ~-~P-~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~ 338 (475)
+ .| ...-..+-|+.+...+ .++...|..|++.+
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~ 500 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELT 500 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHh
Confidence 4 34 4443345555555544 34555666666653
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.11 E-value=2.3e-09 Score=122.89 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=108.2
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCCC-eEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccC------------C
Q 011914 136 PAFMDKVVVHITKNFLNLPNVKVP-LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------N 199 (475)
Q Consensus 136 ~~~~d~~~~~i~k~~l~~~~~~~p-~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~------------~ 199 (475)
+..++.+...+.+....+.....| ..+||+||+|||||++|+++|+.+ +.+++.++++++... |
T Consensus 571 ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~ 650 (852)
T TIGR03346 571 DEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGY 650 (852)
T ss_pred hHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCc
Confidence 344445544444433332222334 568999999999999999999986 457888888765321 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 011914 200 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279 (475)
Q Consensus 200 ~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V 279 (475)
+|-.+. ..+.... +....+||||||||++.+ .+...|++++++.... ++.-......+.
T Consensus 651 ~g~~~~--g~l~~~v----~~~p~~vlllDeieka~~-------------~v~~~Ll~~l~~g~l~--d~~g~~vd~rn~ 709 (852)
T TIGR03346 651 VGYEEG--GQLTEAV----RRKPYSVVLFDEVEKAHP-------------DVFNVLLQVLDDGRLT--DGQGRTVDFRNT 709 (852)
T ss_pred cCcccc--cHHHHHH----HcCCCcEEEEeccccCCH-------------HHHHHHHHHHhcCcee--cCCCeEEecCCc
Confidence 221110 1122222 255567999999997632 3556777777643322 211111234678
Q ss_pred eEEEecCCCCC-------------------------CccccccCCCceEEEe--cCCHHHHHHHHHhhcCC---------
Q 011914 280 PIIVTGNDFST-------------------------LYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT--------- 323 (475)
Q Consensus 280 ~VI~TTN~~~~-------------------------Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~--------- 323 (475)
+||+|||.... +.|+|+. |+|.++. .++.++..+|+...+..
T Consensus 710 iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~ 787 (852)
T TIGR03346 710 VIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERK 787 (852)
T ss_pred EEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999997321 3456666 9988776 47889988888755531
Q ss_pred --CCCChHHHHHHHhc
Q 011914 324 --DNVPKEDIVKLVDT 337 (475)
Q Consensus 324 --~~v~~~~l~~l~~~ 337 (475)
..++.+.+..+++.
T Consensus 788 ~~l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 788 ITLELSDAALDFLAEA 803 (852)
T ss_pred CeecCCHHHHHHHHHh
Confidence 23455566666654
No 133
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=1.6e-09 Score=118.55 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+|||||||+|||++|+++|+.+... ++.+++.. ......||++.+
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e 109 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKE 109 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHH
Confidence 567889999999999999999999997642 22222110 012345555554
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-......|+||||+|.+.. .....|+..++ ++...+.+|++|+.+..|.
T Consensus 110 ~~~~~p~~~~~KVvIIDEa~~Ls~-------------~a~naLLK~LE-------------epp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 110 EIMFPPASSRYRVYIIDEVHMLSN-------------SAFNALLKTIE-------------EPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred HHHhchhcCCCEEEEEEChhhcCH-------------HHHHHHHHhhc-------------cCCCCEEEEEecCChHHhH
Confidence 442111145667999999997632 12234555343 4556777888888889999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhc
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 337 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 337 (475)
++|++ |+..+-+ .|+.++..++++..+...++ +.+.+..++..
T Consensus 164 ~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~ 209 (563)
T PRK06647 164 ATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK 209 (563)
T ss_pred HHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99998 8776555 57888888888877765443 45555555544
No 134
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=1.3e-09 Score=119.87 Aligned_cols=153 Identities=13% Similarity=0.163 Sum_probs=97.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe-------cC--------------ccccCCC--CChHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS-------AG--------------ELESGNA--GEPAKLIRQRYRE 213 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs-------~s--------------~l~s~~~--Ge~e~~Ir~~f~~ 213 (475)
+.|..+|||||+|+|||++|+++|+.+.+.....+ |+ ++..-.. .-....||++.+.
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~ 123 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIES 123 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH
Confidence 56889999999999999999999999865321111 00 0000000 0113457777665
Q ss_pred HHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcc
Q 011914 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (475)
Q Consensus 214 A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~ 293 (475)
+...--.....|+||||+|.+... ....|+..++ +....+.+|++|+.++.+.+
T Consensus 124 ~~~~P~~a~~KVvIIDEad~Ls~~-------------a~naLLKtLE-------------ePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 124 VRYRPVSARYKVYIIDEVHMLSTA-------------AFNALLKTLE-------------EPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred HHhchhcCCcEEEEEEChHhCCHH-------------HHHHHHHHHH-------------hCCCCeEEEEEeCChhhhhH
Confidence 542222455679999999876321 1234555343 45566778888888888988
Q ss_pred ccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhc
Q 011914 294 PLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 337 (475)
Q Consensus 294 aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 337 (475)
.+++ |+..+-+ .|+.++....++.++.+.+ ++.+.+..++..
T Consensus 178 tI~S--Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~ 222 (598)
T PRK09111 178 TVLS--RCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA 222 (598)
T ss_pred HHHh--heeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8988 7765544 5888998888888877654 444444444433
No 135
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=1.9e-09 Score=119.25 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=97.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc--------------------------eEEEecCccccCCCCChHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELESGNAGEPAKLIRQR 210 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~--------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~ 210 (475)
+.+..+|||||||+|||++|+++|+.++.. ++.++.. .+.....||++
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IRei 109 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIREL 109 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHH
Confidence 456789999999999999999999998652 2222211 12334677777
Q ss_pred HHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCC
Q 011914 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290 (475)
Q Consensus 211 f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~ 290 (475)
...+...--.....|+||||+|.+-. .....|+..++ +....+.+|++|++++.
T Consensus 110 i~~a~~~p~~~~~KViIIDEad~Lt~-------------~a~naLLK~LE-------------ePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 110 IERAQFAPVQARWKVYVIDECHMLST-------------AAFNALLKTLE-------------EPPPRVVFVLATTDPQR 163 (620)
T ss_pred HHHHhhChhcCCceEEEEECccccCH-------------HHHHHHHHHHh-------------cCCcCeEEEEEeCChhh
Confidence 77654111134567999999997632 12244555444 45566778888888999
Q ss_pred CccccccCCCceEEEe-cCCHHHHHHHHHhhcCCC--CCChHHHHHHHhcC
Q 011914 291 LYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF 338 (475)
Q Consensus 291 Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~ 338 (475)
+.+.|++ |+..+-+ .++.++....+..+.... .++.+.+..++...
T Consensus 164 llpTIrS--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 164 VLPTIIS--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred hhHHHHh--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 9999988 8876655 567777777777666554 34555555554443
No 136
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.09 E-value=2e-09 Score=123.32 Aligned_cols=143 Identities=14% Similarity=0.191 Sum_probs=90.6
Q ss_pred CCCe-EEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccC------------CCCChHHHHHHHHHHHHHHHHh
Q 011914 157 KVPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKK 220 (475)
Q Consensus 157 ~~p~-glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~------------~~Ge~e~~Ir~~f~~A~~~~~~ 220 (475)
..|. .+||+||||||||++|++||+.+ +.+++.++++++... |+|..+. ..+..+ ++.
T Consensus 595 ~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~---g~l~~~---v~~ 668 (857)
T PRK10865 595 NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG---GYLTEA---VRR 668 (857)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh---HHHHHH---HHh
Confidence 3454 58999999999999999999986 457888887765321 1221110 112222 124
Q ss_pred CCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC------------
Q 011914 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF------------ 288 (475)
Q Consensus 221 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~------------ 288 (475)
...+||||||++++.+ .+...|++++++.... ++.-......+.+||+|||..
T Consensus 669 ~p~~vLllDEieka~~-------------~v~~~Ll~ile~g~l~--d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~ 733 (857)
T PRK10865 669 RPYSVILLDEVEKAHP-------------DVFNILLQVLDDGRLT--DGQGRTVDFRNTVVIMTSNLGSDLIQERFGELD 733 (857)
T ss_pred CCCCeEEEeehhhCCH-------------HHHHHHHHHHhhCcee--cCCceEEeecccEEEEeCCcchHHHHHhccccc
Confidence 4458999999986532 3456777777632222 111112234677899999973
Q ss_pred -------------CCCccccccCCCceEEEe--cCCHHHHHHHHHhhcC
Q 011914 289 -------------STLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR 322 (475)
Q Consensus 289 -------------~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~ 322 (475)
..+.|+|+. |+|.++. .++.++..+|++.++.
T Consensus 734 ~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 734 YAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred hHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 124567887 9977666 4688888888776554
No 137
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.4e-10 Score=112.09 Aligned_cols=141 Identities=19% Similarity=0.288 Sum_probs=96.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc-cCCCCChHHHHH-HHHHHHHHHHHhCCceeEEeccccccccC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPAKLIR-QRYREAADIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~-s~~~Ge~e~~Ir-~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 237 (475)
..|||.||.|||||+||+.+|+.+++||-.-++.+|. .+|+||.-.+|- ++...|.--.++.+..||+|||||+++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 3589999999999999999999999999999998874 589999866543 44444432233566779999999999876
Q ss_pred CCC-CcccchhhHHHHHHHHhhhcCCCcccCCCc---------cccCCCCCceEEEecCCCCCCccccccCCCceEE
Q 011914 238 MGG-TTQYTVNNQMVNATLMNIADNPTNVQLPGM---------YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304 (475)
Q Consensus 238 r~~-~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~---------~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~ 304 (475)
.++ .--.++....|.+.|+.|+. -+.++++-. +......++++|+.. -+.-|+.-+.+ |....
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiE-GTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgG-AF~GlekiI~~--R~~~~ 250 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIE-GTVASVPPQGGRKHPQQEFIQVDTSNILFICGG-AFAGLEKIIKK--RLGKK 250 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHc-CceeccCCCCCCCCCccceEEEcccceeEEecc-ccccHHHHHHH--hccCC
Confidence 432 22345667889999999887 444444411 011223455555543 34556666666 55443
No 138
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=1.2e-09 Score=115.06 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=92.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEE----------EecCcc------c-------cCCCC---ChHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAGEL------E-------SGNAG---EPAKLIRQR 210 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~----------vs~s~l------~-------s~~~G---e~e~~Ir~~ 210 (475)
+.|..+|||||||+|||++|+++|+.+...-.. -.++.. . ..+-| .....|+++
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l 115 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLL 115 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHH
Confidence 678899999999999999999999998652100 011100 0 00011 113445554
Q ss_pred HHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCC
Q 011914 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290 (475)
Q Consensus 211 f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~ 290 (475)
.+.+...--.....|+||||+|.+... . ...|+..++ +..+...+|++|+++..
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~~l~~~------------~-~~~LLk~LE-------------ep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVHMLSIA------------A-FNAFLKTLE-------------EPPPHAIFIFATTELHK 169 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChhhCCHH------------H-HHHHHHHHh-------------cCCCCeEEEEEeCChHH
Confidence 443320001344569999999876321 1 123444333 44456667777777888
Q ss_pred CccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhcCCCCchh
Q 011914 291 LYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 291 Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~g~~i~ 344 (475)
+.++|.+ |+..+-+ .++.++..+.++..+...+ ++.+.+..++.. ++.++.
T Consensus 170 l~~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~-s~g~lr 223 (397)
T PRK14955 170 IPATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRK-AQGSMR 223 (397)
T ss_pred hHHHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHH
Confidence 8888888 6653333 4678888888887776544 555555555443 333443
No 139
>PRK06620 hypothetical protein; Validated
Probab=99.05 E-value=2.4e-09 Score=103.56 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=82.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~ 239 (475)
..++||||||||||+|++++++..+..++ +.... ....+ ....+|+||||+.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~-----------~~~~~---------~~~d~lliDdi~~~----- 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF-----------NEEIL---------EKYNAFIIEDIENW----- 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-----------chhHH---------hcCCEEEEeccccc-----
Confidence 67999999999999999999998875332 21100 00111 12468999999932
Q ss_pred CCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCC--CccccccCCCceE----EEecCCHHHH
Q 011914 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST--LYAPLIRDGRMEK----FYWAPTREDR 313 (475)
Q Consensus 240 ~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~--Ld~aLlR~GRfd~----~i~~P~~eeR 313 (475)
+ ...+..++..+.+ ..+.+||.++..|.. + ++|++ |+.. .+..|+.+.+
T Consensus 98 ---~----~~~lf~l~N~~~e---------------~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~ 152 (214)
T PRK06620 98 ---Q----EPALLHIFNIINE---------------KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELI 152 (214)
T ss_pred ---h----HHHHHHHHHHHHh---------------cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHH
Confidence 1 1233333322222 233344444433433 5 77888 8873 3336999999
Q ss_pred HHHHHhhcCC--CCCChHHHHHHHhcCCCCchh
Q 011914 314 IGVCSGIFRT--DNVPKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 314 ~~Il~~~l~~--~~v~~~~l~~l~~~~~g~~i~ 344 (475)
.++++..+.. -.++.+.+.-++..+++..-.
T Consensus 153 ~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 153 KILIFKHFSISSVTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Confidence 9999877764 356777777777776555444
No 140
>PRK08727 hypothetical protein; Validated
Probab=99.04 E-value=2.1e-09 Score=105.18 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=91.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
..++||||+|||||+|+.++++++ |...++++..++. ..+.+.++. -....+|+|||++.+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEA------LEGRSLVALDGLESIAG 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHH------HhcCCEEEEeCcccccC
Confidence 459999999999999999998773 5566666654432 122233321 23456999999998765
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC-CCCC---ccccccCCCceE--EEe--cC
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FSTL---YAPLIRDGRMEK--FYW--AP 308 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~-~~~L---d~aLlR~GRfd~--~i~--~P 308 (475)
... . ...+..++.. ....+..||+|+|. |..+ ++.|++ ||.. .+. .|
T Consensus 108 ~~~--~-----~~~lf~l~n~----------------~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~ 162 (233)
T PRK08727 108 QRE--D-----EVALFDFHNR----------------ARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVL 162 (233)
T ss_pred ChH--H-----HHHHHHHHHH----------------HHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCC
Confidence 422 1 1122222211 11234568887764 4444 688988 7633 333 58
Q ss_pred CHHHHHHHHHhhcC--CCCCChHHHHHHHhcCCCC
Q 011914 309 TREDRIGVCSGIFR--TDNVPKEDIVKLVDTFPGQ 341 (475)
Q Consensus 309 ~~eeR~~Il~~~l~--~~~v~~~~l~~l~~~~~g~ 341 (475)
+.++|.+|++.+.. .-.++.+.+..+++.+.+.
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTHGERE 197 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCC
Confidence 99999999997654 3456777888888876544
No 141
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=4.1e-09 Score=116.34 Aligned_cols=164 Identities=15% Similarity=0.194 Sum_probs=98.9
Q ss_pred HHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEE----------EecCcc-----------c--cCCC
Q 011914 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAGEL-----------E--SGNA 200 (475)
Q Consensus 144 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~----------vs~s~l-----------~--s~~~ 200 (475)
+..+++.+.. -+.|..+||+||||||||++|+++|+.+.+.-.. -.|+.. . ..+.
T Consensus 25 ~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d 102 (620)
T PRK14954 25 THTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFD 102 (620)
T ss_pred HHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEec
Confidence 3344454432 3678899999999999999999999998662100 011100 0 0011
Q ss_pred CC---hHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCC
Q 011914 201 GE---PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277 (475)
Q Consensus 201 Ge---~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~ 277 (475)
|. ....|+.+.+.....--.....|+||||+|.+... ....|+..++ +...
T Consensus 103 ~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a~naLLK~LE-------------ePp~ 156 (620)
T PRK14954 103 AASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------AFNAFLKTLE-------------EPPP 156 (620)
T ss_pred ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------HHHHHHHHHh-------------CCCC
Confidence 11 13455555444321011345679999999876321 1244555444 4445
Q ss_pred CceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhc
Q 011914 278 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 337 (475)
Q Consensus 278 ~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 337 (475)
.+.+|++|+.+..|.+.|++ |+..+-+ .++.++....+..++...+ ++.+.+..++..
T Consensus 157 ~tv~IL~t~~~~kLl~TI~S--Rc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 157 HAIFIFATTELHKIPATIAS--RCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred CeEEEEEeCChhhhhHHHHh--hceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56677777778899999988 7755554 5788888878887776544 566655555544
No 142
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.03 E-value=3.9e-09 Score=106.48 Aligned_cols=148 Identities=15% Similarity=0.170 Sum_probs=93.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC-----CceEEEecCccccCCCCChHHHHHHHHHHHHHHHH--hCCceeEEeccccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLFINDLDA 233 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg-----~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~--~~~p~ILfIDEiDa 233 (475)
.++||||||||||++++++++++. .+++.++.+... ....++..+........ ...+.+|+|||+|.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 479999999999999999999963 344555443211 11223333222211110 13467999999997
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 312 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~ee 312 (475)
+... ....|..+++ .......+|+++|.+..+.+++.+ |+..+.+ .|+.++
T Consensus 114 l~~~-------------~~~~L~~~le-------------~~~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~l~~~e 165 (319)
T PRK00440 114 LTSD-------------AQQALRRTME-------------MYSQNTRFILSCNYSSKIIDPIQS--RCAVFRFSPLKKEA 165 (319)
T ss_pred CCHH-------------HHHHHHHHHh-------------cCCCCCeEEEEeCCccccchhHHH--HhheeeeCCCCHHH
Confidence 7321 1133444444 223456678888888888888888 6665444 578899
Q ss_pred HHHHHHhhcCCCC--CChHHHHHHHhcCCCCch
Q 011914 313 RIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSI 343 (475)
Q Consensus 313 R~~Il~~~l~~~~--v~~~~l~~l~~~~~g~~i 343 (475)
...+++.++...+ ++.+.+..++... +.++
T Consensus 166 i~~~l~~~~~~~~~~i~~~al~~l~~~~-~gd~ 197 (319)
T PRK00440 166 VAERLRYIAENEGIEITDDALEAIYYVS-EGDM 197 (319)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCH
Confidence 9999988887654 5666777776653 3344
No 143
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.02 E-value=1.5e-09 Score=111.31 Aligned_cols=145 Identities=16% Similarity=0.196 Sum_probs=90.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc--CCCCChHHHHH----HHHHHHH-HHHHhCCceeEEecccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES--GNAGEPAKLIR----QRYREAA-DIIKKGKMCCLFINDLD 232 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s--~~~Ge~e~~Ir----~~f~~A~-~~~~~~~p~ILfIDEiD 232 (475)
..+||.||||||||++|+.+|..++.+|+.+.+..-.. ...|...-..+ ..|+.-. -+..... +|+|+|||+
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEIn 122 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEIN 122 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc-eEEEEeccc
Confidence 45999999999999999999999999999999864321 22232211100 0000000 0000111 599999998
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecC-----CCCCCccccccCCCceEEEe-
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYW- 306 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN-----~~~~Ld~aLlR~GRfd~~i~- 306 (475)
...+ .+...|+..++ ...+.+++..-..-....+||+|+| ....|++|+++ ||-..++
T Consensus 123 ra~p-------------~~q~aLl~~l~-e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 123 RAPP-------------EVQNALLEALE-ERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred cCCH-------------HHHHHHHHHHh-CcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 6543 34466777665 4566666652012235666777889 67789999999 9976666
Q ss_pred -cC-CHHHHHHHHHhhc
Q 011914 307 -AP-TREDRIGVCSGIF 321 (475)
Q Consensus 307 -~P-~~eeR~~Il~~~l 321 (475)
.| ..++...++...-
T Consensus 187 ~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 187 DYPDSEEEERIILARVG 203 (329)
T ss_pred CCCCchHHHHHHHHhCc
Confidence 57 5555555554443
No 144
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.01 E-value=6.8e-09 Score=100.48 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=88.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
..+..++|+||||||||+||++++++. +..++++++..+.. .+. . .....+|+|||+|.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------------~~~--~----~~~~~~liiDdi~~ 101 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------------AFD--F----DPEAELYAVDDVER 101 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------------HHh--h----cccCCEEEEeChhh
Confidence 445789999999999999999999985 66778888765431 111 1 23467999999997
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC---CCccccccCCCce--EEEe--
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGRME--KFYW-- 306 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~---~Ld~aLlR~GRfd--~~i~-- 306 (475)
+... .+ ..|..+++ . . .......+|+|++.+. .+.+.|.+ ||. ..+.
T Consensus 102 l~~~----~~---------~~L~~~~~-----~-----~-~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~ 155 (227)
T PRK08903 102 LDDA----QQ---------IALFNLFN-----R-----V-RAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELK 155 (227)
T ss_pred cCch----HH---------HHHHHHHH-----H-----H-HHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEec
Confidence 6321 11 22222222 0 0 0122333555554322 34566666 653 3444
Q ss_pred cCCHHHHHHHHHhhcCC--CCCChHHHHHHHhcCCCCchh
Q 011914 307 APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 307 ~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g~~i~ 344 (475)
.|+.+++..++..+... -.++.+.+..++..++|....
T Consensus 156 pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~ 195 (227)
T PRK08903 156 PLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPS 195 (227)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 47777888888876654 456677788888865555443
No 145
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.01 E-value=6.9e-09 Score=99.73 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=91.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
..+..++|+||||||||++|+++++++ +.+++++++..+... ...++.. ...+.+|+|||+|.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~------~~~~~lLvIDdi~~ 101 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA--------DPEVLEG------LEQADLVCLDDVEA 101 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh--------HHHHHhh------cccCCEEEEeChhh
Confidence 456789999999999999999999886 467888888766521 1122221 12346999999997
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC-CCCCc---cccccCCCce--EEEe-
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FSTLY---APLIRDGRME--KFYW- 306 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~-~~~Ld---~aLlR~GRfd--~~i~- 306 (475)
+..... .+ ..+...+..+.+ .+..+|+|+|. +..++ +.|.+ |+. ..+.
T Consensus 102 l~~~~~--~~-----~~L~~~l~~~~~----------------~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l 156 (226)
T TIGR03420 102 IAGQPE--WQ-----EALFHLYNRVRE----------------AGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQL 156 (226)
T ss_pred hcCChH--HH-----HHHHHHHHHHHH----------------cCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEec
Confidence 743211 01 122222222111 12356666663 33332 66777 553 5555
Q ss_pred -cCCHHHHHHHHHhhcCC--CCCChHHHHHHHhcCCCCch
Q 011914 307 -APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSI 343 (475)
Q Consensus 307 -~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g~~i 343 (475)
.|+.+++..+++.+... ..++.+.+..++..++|...
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r 196 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMG 196 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHH
Confidence 46889999999877653 35677788888886555433
No 146
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3e-09 Score=112.52 Aligned_cols=137 Identities=13% Similarity=0.145 Sum_probs=97.7
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCCh--H--HHHHHHHHHHHHHHHhCCceeEEec
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP--A--KLIRQRYREAADIIKKGKMCCLFIN 229 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~--e--~~Ir~~f~~A~~~~~~~~p~ILfID 229 (475)
+...+-..+||+||||+|||.||..+|...+.||+.+-.++-. +|-+ + ..|+.+|+.|. +..-+||++|
T Consensus 533 s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAY----kS~lsiivvD 605 (744)
T KOG0741|consen 533 SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAY----KSPLSIIVVD 605 (744)
T ss_pred cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhh----cCcceEEEEc
Confidence 3434457899999999999999999999999999987655322 3433 3 46889999998 8889999999
Q ss_pred cccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcc-ccccCCCceEEEecC
Q 011914 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAP 308 (475)
Q Consensus 230 EiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~-aLlR~GRfd~~i~~P 308 (475)
+|+.+..--.=+-. -...+.++|+-+++ ..+ ....+.+|++||.+...|.. .++. .|+..|.+|
T Consensus 606 diErLiD~vpIGPR---fSN~vlQaL~VllK-----~~p-----pkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vp 670 (744)
T KOG0741|consen 606 DIERLLDYVPIGPR---FSNLVLQALLVLLK-----KQP-----PKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVP 670 (744)
T ss_pred chhhhhcccccCch---hhHHHHHHHHHHhc-----cCC-----CCCceEEEEecccHHHHHHHcCHHH--hhhheeecC
Confidence 99988642100000 11366677777776 212 23567888889988776655 4666 788888887
Q ss_pred CHHH
Q 011914 309 TRED 312 (475)
Q Consensus 309 ~~ee 312 (475)
+...
T Consensus 671 nl~~ 674 (744)
T KOG0741|consen 671 NLTT 674 (744)
T ss_pred ccCc
Confidence 5443
No 147
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=6e-09 Score=112.97 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=95.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC------------------------ceEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~------------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+|||||||+|||++|+++|+.+.. .++.+++..- ..-..||.+..
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie 107 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIE 107 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHH
Confidence 57888999999999999999999999732 1222222110 01345555554
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-......|++|||+|.+.. .....|+..++ +....+.+|++|+++..|.
T Consensus 108 ~~~~~P~~~~~KVvIIDEad~Lt~-------------~A~NALLK~LE-------------Epp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 108 QTKYKPSMARFKIFIIDEVHMLTK-------------EAFNALLKTLE-------------EPPSYVKFILATTDPLKLP 161 (535)
T ss_pred HHhhCcccCCeEEEEEECcccCCH-------------HHHHHHHHHHh-------------hcCCceEEEEEECChhhCc
Confidence 332000023456999999987632 12234555444 4456677888888899999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhc
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 337 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 337 (475)
+++++ |+..+.+ .++.++..+.++.++...++ +.+.+..++..
T Consensus 162 ~tI~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~ 207 (535)
T PRK08451 162 ATILS--RTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARS 207 (535)
T ss_pred hHHHh--hceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999 8765555 57888888888888776554 44555555554
No 148
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.5e-08 Score=105.61 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=93.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc-----eEEEecCccccC---------------CCCChHHHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESG---------------NAGEPAKLIRQRYREAAD 216 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~-----~i~vs~s~l~s~---------------~~Ge~e~~Ir~~f~~A~~ 216 (475)
..|..+++|||||||||.+++.+++++.-. +++|+|-...+. ..|.+.. ++|+.-.+
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~---~~~~~l~~ 116 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSL---EILKRLYD 116 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchH---HHHHHHHH
Confidence 445569999999999999999999996443 788998554321 1122111 22333222
Q ss_pred HHH-hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC---CCc
Q 011914 217 IIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLY 292 (475)
Q Consensus 217 ~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~---~Ld 292 (475)
.+. .....||++||+|.+..+.+ ..|++|+. +......++.+|+.+|..+ .+|
T Consensus 117 ~~~~~~~~~IvvLDEid~L~~~~~-------------~~LY~L~r----------~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 117 NLSKKGKTVIVILDEVDALVDKDG-------------EVLYSLLR----------APGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHhcCCeEEEEEcchhhhccccc-------------hHHHHHHh----------hccccceeEEEEEEeccHHHHHHhh
Confidence 332 56788999999999987632 34555555 2223357788999998874 688
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcC
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFR 322 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~ 322 (475)
+-+.+........+ ..+.++...|++....
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 88877433344333 3599999999985544
No 149
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.98 E-value=2.1e-09 Score=108.48 Aligned_cols=129 Identities=16% Similarity=0.240 Sum_probs=86.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC------------------------CceEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG------------------------INPIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg------------------------~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+||+||||+|||++|.++|+++. -.++.++++.....- -....++++-+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 4566899999999999999999999977 467777777554211 11223333322
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
........+...|++|||+|.+... .. +.|+..+. ++..+.++|++||+++.|-
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~------------A~-nallk~lE-------------ep~~~~~~il~~n~~~~il 153 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED------------AA-NALLKTLE-------------EPPKNTRFILITNDPSKIL 153 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH------------HH-HHHHHHhc-------------cCCCCeEEEEEcCChhhcc
Confidence 2210000255789999999987542 12 33444333 6678899999999999999
Q ss_pred cccccCCCceEEEecC-CHHHHHH
Q 011914 293 APLIRDGRMEKFYWAP-TREDRIG 315 (475)
Q Consensus 293 ~aLlR~GRfd~~i~~P-~~eeR~~ 315 (475)
+.+++ |+..+.+.| +...+..
T Consensus 154 ~tI~S--Rc~~i~f~~~~~~~~i~ 175 (325)
T COG0470 154 PTIRS--RCQRIRFKPPSRLEAIA 175 (325)
T ss_pred chhhh--cceeeecCCchHHHHHH
Confidence 99999 887777644 4444333
No 150
>PHA02244 ATPase-like protein
Probab=98.97 E-value=2.3e-09 Score=110.88 Aligned_cols=135 Identities=17% Similarity=0.190 Sum_probs=80.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCC---ChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~G---e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
..+||+||||||||++|+++|+.++.+|+.++...-.....| .........|-+| ...+.+|+|||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a~p 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDASIP 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcCCH
Confidence 458999999999999999999999999999874211111111 1111111122223 34578999999997643
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-----------CCCccccccCCCceEEE
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----------STLYAPLIRDGRMEKFY 305 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-----------~~Ld~aLlR~GRfd~~i 305 (475)
. +...|..++++- .+.+.|.. ....++..+|+|+|.+ ..|+++++. ||-.+.
T Consensus 195 ~-------------vq~~L~~lLd~r-~l~l~g~~-i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~I~ 257 (383)
T PHA02244 195 E-------------ALIIINSAIANK-FFDFADER-VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAPIE 257 (383)
T ss_pred H-------------HHHHHHHHhccC-eEEecCcE-EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEEee
Confidence 2 223344444321 22222221 1224678899999973 578999999 996544
Q ss_pred e-cCCHHHHHHHH
Q 011914 306 W-APTREDRIGVC 317 (475)
Q Consensus 306 ~-~P~~eeR~~Il 317 (475)
+ .|+ +....|.
T Consensus 258 ~dyp~-~~E~~i~ 269 (383)
T PHA02244 258 FDYDE-KIEHLIS 269 (383)
T ss_pred CCCCc-HHHHHHh
Confidence 4 576 3333443
No 151
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=7.8e-09 Score=113.98 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=93.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCce-------------------------EEEecCccccCCCCChHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINP-------------------------IMMSAGELESGNAGEPAKLIRQRY 211 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~-------------------------i~vs~s~l~s~~~Ge~e~~Ir~~f 211 (475)
+.+..+|||||||+|||++|+++|+.++... +.++.+. .-....+|++.
T Consensus 36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii 109 (585)
T PRK14950 36 RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREII 109 (585)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHH
Confidence 4677899999999999999999999975421 1122110 11234455554
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCC
Q 011914 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (475)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~L 291 (475)
+.+...-......||||||+|.+... .. ..|+..++ +....+.+|++++..+.+
T Consensus 110 ~~~~~~p~~~~~kVvIIDEa~~L~~~------------a~-naLLk~LE-------------epp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 110 ERVQFRPALARYKVYIIDEVHMLSTA------------AF-NALLKTLE-------------EPPPHAIFILATTEVHKV 163 (585)
T ss_pred HHHhhCcccCCeEEEEEeChHhCCHH------------HH-HHHHHHHh-------------cCCCCeEEEEEeCChhhh
Confidence 43321111345679999999876321 12 34454343 334566777778888888
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhcCC
Q 011914 292 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFP 339 (475)
Q Consensus 292 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~ 339 (475)
.+.|++ |+..+.+ .++.++...++..++...+ ++.+.+..++....
T Consensus 164 l~tI~S--R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 164 PATILS--RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred hHHHHh--ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 888887 7765544 4788888888887766544 45555555554433
No 152
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=9.4e-09 Score=105.64 Aligned_cols=135 Identities=14% Similarity=0.149 Sum_probs=93.1
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHH
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 211 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f 211 (475)
-+.|..+||+||+|+|||++|+++|+.+... ++.+....- ++ .-....||++-
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHH
Confidence 3678999999999999999999999996441 222221100 00 01245677766
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCC
Q 011914 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (475)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~L 291 (475)
+.+..........|++|||+|.+-.. . ...|++.++ ++..++.+|++|++++.|
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~~------------a-aNaLLK~LE-------------EPp~~~~fiL~t~~~~~l 149 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRN------------A-ANALLKSLE-------------EPSGDTVLLLISHQPSRL 149 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCHH------------H-HHHHHHHHh-------------CCCCCeEEEEEECChhhC
Confidence 55532222456779999999976331 2 244555444 566788899999999999
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhc
Q 011914 292 YAPLIRDGRMEKFYW-APTREDRIGVCSGIF 321 (475)
Q Consensus 292 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l 321 (475)
.|.+++ |+..+.+ .|+.++..+.+....
T Consensus 150 l~TI~S--Rc~~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 150 LPTIKS--RCQQQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred cHHHHh--hceeeeCCCcCHHHHHHHHHHhc
Confidence 999999 9888666 588888888777554
No 153
>PRK08116 hypothetical protein; Validated
Probab=98.94 E-value=5.4e-09 Score=104.54 Aligned_cols=100 Identities=25% Similarity=0.401 Sum_probs=62.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHH-----HHHHHH-hCCceeEEe
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-----AADIIK-KGKMCCLFI 228 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~-----A~~~~~-~~~p~ILfI 228 (475)
.+.+++|||+||||||+||.+||+++ +.+++.++.+++.. .++..|.. ..++++ .....+|+|
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~--------~i~~~~~~~~~~~~~~~~~~l~~~dlLvi 184 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN--------RIKSTYKSSGKEDENEIIRSLVNADLLIL 184 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--------HHHHHHhccccccHHHHHHHhcCCCEEEE
Confidence 35689999999999999999999985 77888888776653 22222210 011122 234569999
Q ss_pred ccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC
Q 011914 229 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (475)
Q Consensus 229 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~ 288 (475)
||+...... . .....|.++++ .....+.++|+|||.+
T Consensus 185 DDlg~e~~t-----~------~~~~~l~~iin------------~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 185 DDLGAERDT-----E------WAREKVYNIID------------SRYRKGLPTIVTTNLS 221 (268)
T ss_pred ecccCCCCC-----H------HHHHHHHHHHH------------HHHHCCCCEEEECCCC
Confidence 999643111 1 12234555554 0123556899999975
No 154
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=9e-09 Score=114.81 Aligned_cols=137 Identities=20% Similarity=0.241 Sum_probs=99.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCcccc--CCCCChHHHHHHHHHHHHHHHHhCCceeEEe
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIKKGKMCCLFI 228 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~s--~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfI 228 (475)
.-+|.|+||+|||.+++.+|... +..++.++.+.+.. +|.|+.|..++.+.++.. ...+.||||
T Consensus 193 NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~----~~~~vILFI 268 (786)
T COG0542 193 NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVE----KSKNVILFI 268 (786)
T ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHh----cCCCeEEEE
Confidence 34677999999999999999983 56778888887754 689999999999999876 666999999
Q ss_pred ccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecC-----CCCCCccccccCCCceE
Q 011914 229 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEK 303 (475)
Q Consensus 229 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN-----~~~~Ld~aLlR~GRfd~ 303 (475)
|||+.+.+.-..... .++-. ..|.-.+. ...+-+|++|. ..=.-|+||-| ||..
T Consensus 269 DEiHtiVGAG~~~G~-a~DAa---NiLKPaLA---------------RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ~ 327 (786)
T COG0542 269 DEIHTIVGAGATEGG-AMDAA---NLLKPALA---------------RGELRCIGATTLDEYRKYIEKDAALER--RFQK 327 (786)
T ss_pred echhhhcCCCccccc-ccchh---hhhHHHHh---------------cCCeEEEEeccHHHHHHHhhhchHHHh--cCce
Confidence 999999875321111 12211 11211111 34456777552 23356999999 9999
Q ss_pred EEe-cCCHHHHHHHHHhhcC
Q 011914 304 FYW-APTREDRIGVCSGIFR 322 (475)
Q Consensus 304 ~i~-~P~~eeR~~Il~~~l~ 322 (475)
++. .|+.++-..||+.+-.
T Consensus 328 V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 328 VLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred eeCCCCCHHHHHHHHHHHHH
Confidence 888 7999999999985443
No 155
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.90 E-value=1.4e-08 Score=112.52 Aligned_cols=162 Identities=16% Similarity=0.248 Sum_probs=93.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCcccc-------CCCCChHHHHHHHHHHHHHH---
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES-------GNAGEPAKLIRQRYREAADI--- 217 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~s-------~~~Ge~e~~Ir~~f~~A~~~--- 217 (475)
.|..++|+||||||||++|+++++.. +.+|+.+++..+.. .+.|.... ..+..+...
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~---~~~~~a~~~l~~ 250 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHD---PIYQGARRDLAE 250 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccH---HHHHHHHHHHHH
Confidence 35679999999999999999998765 35688888765521 11221100 111112111
Q ss_pred ----------HHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccC-CCccc--------------
Q 011914 218 ----------IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL-PGMYN-------------- 272 (475)
Q Consensus 218 ----------~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~l-dg~~~-------------- 272 (475)
+......+|||||++.+-.. ....|+.++++.. +.+ .+.|.
T Consensus 251 ~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~-v~~~~~~~~~~~~~~~~~ik~~~ 316 (615)
T TIGR02903 251 TGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------------LQNKLLKVLEDKR-VEFSSSYYDPDDPNVPKYIKKLF 316 (615)
T ss_pred cCCCchhcCchhhcCCCeEEEeccccCCHH-------------HHHHHHHHHhhCe-EEeecceeccCCcccchhhhhhc
Confidence 11234569999999866321 2233444443211 111 11110
Q ss_pred -cCCCCCceEEE-ecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhcCC
Q 011914 273 -QEENPRVPIIV-TGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFP 339 (475)
Q Consensus 273 -~~~~~~V~VI~-TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~ 339 (475)
.....++.+|+ ||+.++.++++|++ ||..+.+ .++.+++.+|++.++...+ ++. ++.++...|+
T Consensus 317 ~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls~-eal~~L~~ys 385 (615)
T TIGR02903 317 EEGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLAA-GVEELIARYT 385 (615)
T ss_pred ccCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHCC
Confidence 01122344444 66788999999988 9987666 4688999999998877644 444 3444444443
No 156
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.90 E-value=2.8e-08 Score=97.50 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=102.5
Q ss_pred HHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHh
Q 011914 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 220 (475)
Q Consensus 144 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~ 220 (475)
..+++|......-.+...+||||+.|||||++++++.++ -|+.++.|....|.+ +-.+++..+ ..
T Consensus 37 ~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l~---~~ 104 (249)
T PF05673_consen 37 EALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLLR---DR 104 (249)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHHh---cC
Confidence 344444433222356789999999999999999999997 478888888776642 333444321 14
Q ss_pred CCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccC--
Q 011914 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD-- 298 (475)
Q Consensus 221 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~-- 298 (475)
..+-|||+||+. |...+ +. -..|..+++ |- ......+|.|.+|+|+...+++.+...
T Consensus 105 ~~kFIlf~DDLs--Fe~~d--~~--------yk~LKs~Le--------Gg-le~~P~NvliyATSNRRHLv~E~~~d~~~ 163 (249)
T PF05673_consen 105 PYKFILFCDDLS--FEEGD--TE--------YKALKSVLE--------GG-LEARPDNVLIYATSNRRHLVPESFSDRED 163 (249)
T ss_pred CCCEEEEecCCC--CCCCc--HH--------HHHHHHHhc--------Cc-cccCCCcEEEEEecchhhccchhhhhccC
Confidence 557799999874 32211 11 134444444 32 235578999999999987776543321
Q ss_pred -------------------CCceEEEe--cCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhc
Q 011914 299 -------------------GRMEKFYW--APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 337 (475)
Q Consensus 299 -------------------GRfd~~i~--~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 337 (475)
-||-..+. .|+.++=++|+++++...++ +.+.+..-+-.
T Consensus 164 ~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~ 225 (249)
T PF05673_consen 164 IQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQ 225 (249)
T ss_pred CCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 16666655 58888899999988875444 33444444433
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=2.4e-08 Score=110.55 Aligned_cols=147 Identities=12% Similarity=0.153 Sum_probs=95.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC-------------------------ceEEEecCccccCCCCChHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI-------------------------NPIMMSAGELESGNAGEPAKLIRQRY 211 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~-------------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f 211 (475)
+.|..+|||||+|+|||++|+++|+.+.+ +++.+++.. ......|+.+.
T Consensus 37 ~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li 110 (614)
T PRK14971 37 KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLI 110 (614)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHH
Confidence 57888999999999999999999998753 223332221 11134566666
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCC
Q 011914 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (475)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~L 291 (475)
..+...--.....|++|||+|.+.. .....|+..++ +......+|++|+....|
T Consensus 111 ~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~naLLK~LE-------------epp~~tifIL~tt~~~kI 164 (614)
T PRK14971 111 EQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAFNAFLKTLE-------------EPPSYAIFILATTEKHKI 164 (614)
T ss_pred HHHhhCcccCCcEEEEEECcccCCH-------------HHHHHHHHHHh-------------CCCCCeEEEEEeCCchhc
Confidence 5543111134456999999987632 12245555454 444556677777777889
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCC--hHHHHHHHhc
Q 011914 292 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDT 337 (475)
Q Consensus 292 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~~~ 337 (475)
-++|++ |+..+-+ .++.++....++.++...++. .+.+..++..
T Consensus 165 l~tI~S--Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~ 211 (614)
T PRK14971 165 LPTILS--RCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQK 211 (614)
T ss_pred hHHHHh--hhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999998 7766544 578888888888877766554 3445544444
No 158
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=7e-08 Score=97.77 Aligned_cols=91 Identities=22% Similarity=0.253 Sum_probs=64.6
Q ss_pred CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEec----CCCCCCcccccc
Q 011914 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG----NDFSTLYAPLIR 297 (475)
Q Consensus 222 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT----N~~~~Ld~aLlR 297 (475)
+..||||||||+++.+.+. ...++....|..-|+-|... +.|+.- |-....+++++|+++ ..|+.|=|.|.-
T Consensus 250 ~~GIvFIDEIDKIa~~~~~-g~~dvSREGVQRDlLPlvEG-stV~TK--yG~VkTdHILFIasGAFh~sKPSDLiPELQG 325 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVEG-STVSTK--YGPVKTDHILFIASGAFHVAKPSDLIPELQG 325 (444)
T ss_pred hcCeEEEehhhHHHhcCCC-CCCCcchhhhcccccccccC-ceeecc--ccccccceEEEEecCceecCChhhcChhhcC
Confidence 3469999999999987542 22267777888888876652 222221 333667899999977 577888888865
Q ss_pred CCCceEEEec--CCHHHHHHHHH
Q 011914 298 DGRMEKFYWA--PTREDRIGVCS 318 (475)
Q Consensus 298 ~GRfd~~i~~--P~~eeR~~Il~ 318 (475)
||...+.+ .+.++-..||.
T Consensus 326 --RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 --RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred --CCceEEEcccCCHHHHHHHHc
Confidence 99998884 78888777764
No 159
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1.4e-07 Score=97.89 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=92.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------eEEE--ec--------------Ccc--c-cCC---CC-----Ch
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMM--SA--------------GEL--E-SGN---AG-----EP 203 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------~i~v--s~--------------s~l--~-s~~---~G-----e~ 203 (475)
+.|..+||+||+|+|||++|+.+|+.+... .... .+ +.+ . ... .| -+
T Consensus 43 rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~ 122 (351)
T PRK09112 43 KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAIT 122 (351)
T ss_pred CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCC
Confidence 678899999999999999999999997541 0000 00 000 0 000 00 01
Q ss_pred HHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEE
Q 011914 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283 (475)
Q Consensus 204 e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~ 283 (475)
...||.+-+........+...|++|||+|.+-.. .. ..|+..++ +...+..+|+
T Consensus 123 vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~------------aa-naLLk~LE-------------Epp~~~~fiL 176 (351)
T PRK09112 123 VDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN------------AA-NAILKTLE-------------EPPARALFIL 176 (351)
T ss_pred HHHHHHHHHHhhhccccCCceEEEEEchhhcCHH------------HH-HHHHHHHh-------------cCCCCceEEE
Confidence 2344444332221112456779999999977321 12 33555444 4456677777
Q ss_pred ecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCChHHHHHHHh
Q 011914 284 TGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKEDIVKLVD 336 (475)
Q Consensus 284 TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~ 336 (475)
.|+.++.+.+.+++ |+..+-. .|+.++..+++.......+++.+.+..+..
T Consensus 177 it~~~~~llptIrS--Rc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~ 228 (351)
T PRK09112 177 ISHSSGRLLPTIRS--RCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQ 228 (351)
T ss_pred EECChhhccHHHHh--hccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHH
Confidence 78889999999988 8854433 589999999998754333355555544443
No 160
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.83 E-value=3.7e-09 Score=94.08 Aligned_cols=118 Identities=15% Similarity=0.195 Sum_probs=61.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecC-ccc-cCCCCChHHHHHHHHHHHHHHHH-hCC---ceeEEecccccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-ELE-SGNAGEPAKLIRQRYREAADIIK-KGK---MCCLFINDLDAG 234 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s-~l~-s~~~Ge~e~~Ir~~f~~A~~~~~-~~~---p~ILfIDEiDal 234 (475)
++||+|+||+|||++|+++|+.+|..|.+|.+. ++. +...|. .+|+......+ ... ..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~------~v~~~~~~~f~~~~GPif~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGF------PVYDQETGEFEFRPGPIFTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEE------EEEETTTTEEEEEE-TT-SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceee------eeeccCCCeeEeecChhhhceeeecccccC
Confidence 489999999999999999999999999988764 222 000010 01111000000 011 249999999865
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccCCCc
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 301 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~GRf 301 (475)
-++ +.+.|++.+. +..|.++|... .-.....||+|-|..+ .|+++++. ||
T Consensus 75 ppk-------------tQsAlLeam~-Er~Vt~~g~~~-~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 PPK-------------TQSALLEAME-ERQVTIDGQTY-PLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -HH-------------HHHHHHHHHH-HSEEEETTEEE-E--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CHH-------------HHHHHHHHHH-cCeEEeCCEEE-ECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 443 4466666655 56777777611 1234567788889876 68888887 66
No 161
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.82 E-value=5.8e-08 Score=101.81 Aligned_cols=191 Identities=20% Similarity=0.282 Sum_probs=116.4
Q ss_pred hccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhC-----CceEEEecCcc
Q 011914 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGEL 195 (475)
Q Consensus 121 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg-----~~~i~vs~s~l 195 (475)
..|+|+|.+.+ +. .+.....++..-..+|. .-.-++||||.|.|||+|++|++++.. ..+++++...+
T Consensus 82 ~~ytFdnFv~g----~~--N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f 154 (408)
T COG0593 82 PKYTFDNFVVG----PS--NRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF 154 (408)
T ss_pred CCCchhheeeC----Cc--hHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH
Confidence 34566665443 21 13334445554444542 334599999999999999999999952 34555655444
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccC
Q 011914 196 ESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274 (475)
Q Consensus 196 ~s~~~Ge~e~~Ir~~f~~A~~~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~ 274 (475)
.+ ..+..+.+...+..+ ...-.+|+||||+.+.++.. + ......++..+.+
T Consensus 155 ~~-------~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~--~-----qeefFh~FN~l~~-------------- 206 (408)
T COG0593 155 TN-------DFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKER--T-----QEEFFHTFNALLE-------------- 206 (408)
T ss_pred HH-------HHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChh--H-----HHHHHHHHHHHHh--------------
Confidence 32 122222221111222 33556999999999887632 1 2355566655443
Q ss_pred CCCCceEEEecC-CCCC---CccccccCCCceEEEe----cCCHHHHHHHHHhhcCCC--CCChHHHHHHHhcCCCCchh
Q 011914 275 ENPRVPIIVTGN-DFST---LYAPLIRDGRMEKFYW----APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 275 ~~~~V~VI~TTN-~~~~---Ld~aLlR~GRfd~~i~----~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~~g~~i~ 344 (475)
..+ -||+|+. .|.. +.+.|.+ ||+.-+. .|+.+.|.+|++...... .++.+.+.-++..+...--+
T Consensus 207 -~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvRe 282 (408)
T COG0593 207 -NGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRE 282 (408)
T ss_pred -cCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHH
Confidence 122 5666664 3444 4577888 8877544 599999999999876654 55666777777777666666
Q ss_pred hHHHHH
Q 011914 345 FFGALR 350 (475)
Q Consensus 345 f~gal~ 350 (475)
..|++.
T Consensus 283 LegaL~ 288 (408)
T COG0593 283 LEGALN 288 (408)
T ss_pred HHHHHH
Confidence 666664
No 162
>PRK12377 putative replication protein; Provisional
Probab=98.82 E-value=2.6e-08 Score=98.50 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=64.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHH---HHHHH-hCCceeEEeccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA---ADIIK-KGKMCCLFINDL 231 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A---~~~~~-~~~p~ILfIDEi 231 (475)
..+++|+||||||||+||.+||+++ |..++.++..++.. .++..|... .+.++ -....+|+|||+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~--------~l~~~~~~~~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS--------RLHESYDNGQSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH--------HHHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence 4689999999999999999999996 67777777766652 233333211 11222 456789999999
Q ss_pred cccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC
Q 011914 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (475)
Q Consensus 232 Dal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~ 288 (475)
+...... -....|.++++ .....+.|+|+|||..
T Consensus 173 g~~~~s~-----------~~~~~l~~ii~------------~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 173 GIQRETK-----------NEQVVLNQIID------------RRTASMRSVGMLTNLN 206 (248)
T ss_pred CCCCCCH-----------HHHHHHHHHHH------------HHHhcCCCEEEEcCCC
Confidence 8653221 11234555544 1234568899999975
No 163
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.81 E-value=1.5e-08 Score=108.97 Aligned_cols=167 Identities=13% Similarity=0.198 Sum_probs=108.6
Q ss_pred HHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCce--EEEecCcc------ccC-CC---------CChHH
Q 011914 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINP--IMMSAGEL------ESG-NA---------GEPAK 205 (475)
Q Consensus 144 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~--i~vs~s~l------~s~-~~---------Ge~e~ 205 (475)
...+++-+.. -+.+.+.||.||-|||||++||.+|+.+++.- ..--|+++ ..+ ++ .....
T Consensus 25 ~~~L~nal~~--~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVd 102 (515)
T COG2812 25 VKTLSNALEN--GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVD 102 (515)
T ss_pred HHHHHHHHHh--CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChH
Confidence 3344444332 36678999999999999999999999986531 11111111 100 00 01234
Q ss_pred HHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEec
Q 011914 206 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG 285 (475)
Q Consensus 206 ~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT 285 (475)
.||++-+++.-.--..++.|.+|||++-+... .. ..|+.-+ +++..+|.+|.+|
T Consensus 103 diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~------------af-NALLKTL-------------EEPP~hV~FIlAT 156 (515)
T COG2812 103 DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ------------AF-NALLKTL-------------EEPPSHVKFILAT 156 (515)
T ss_pred HHHHHHHHhccCCccccceEEEEecHHhhhHH------------HH-HHHhccc-------------ccCccCeEEEEec
Confidence 56666665531111455679999999966321 23 3343322 3678889999999
Q ss_pred CCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCCh--HHHHHHHhcCCC
Q 011914 286 NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPK--EDIVKLVDTFPG 340 (475)
Q Consensus 286 N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~--~~l~~l~~~~~g 340 (475)
-.++.+++-+++ |+.++-+ .-+.++....+..++..+++.. +.+..++....|
T Consensus 157 Te~~Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 157 TEPQKIPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred CCcCcCchhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 999999999999 8888777 4667788888888888776654 456666665555
No 164
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.2e-07 Score=96.98 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=88.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc----------------------------------eEEEecC--ccccCCC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------------------------PIMMSAG--ELESGNA 200 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~----------------------------------~i~vs~s--~l~s~~~ 200 (475)
+.|..+||+||+|+||+++|.++|+.+-.. ++.+... +-..+..
T Consensus 39 rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 39 RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccc
Confidence 678899999999999999999999986321 1111110 0000000
Q ss_pred C-ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCc
Q 011914 201 G-EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279 (475)
Q Consensus 201 G-e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V 279 (475)
. -....||++-+.+........+.|++|||+|.+-. .....|+..++ +...++
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-------------~aanaLLK~LE-------------epp~~~ 172 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-------------NAANALLKVLE-------------EPPARS 172 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------------HHHHHHHHHHh-------------cCCCCe
Confidence 0 01233555444332112256788999999996622 12234555444 445677
Q ss_pred eEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhc
Q 011914 280 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIF 321 (475)
Q Consensus 280 ~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l 321 (475)
.+|++|++++.+.+.+++ |+..+-+ .|+.++..+++....
T Consensus 173 ~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhc
Confidence 888899999999999888 8877666 578999998887754
No 165
>PRK09087 hypothetical protein; Validated
Probab=98.78 E-value=4.9e-08 Score=95.27 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=82.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~ 239 (475)
.-++||||+|+|||+|++++|+..+..+ ++...+. ...+... ...+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~-----------~~~~~~~-------~~~~l~iDDi~~~~~--- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIG-----------SDAANAA-------AEGPVLIEDIDAGGF--- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcc-----------hHHHHhh-------hcCeEEEECCCCCCC---
Confidence 3489999999999999999999876553 3332221 0111111 124789999996521
Q ss_pred CCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC-CC--C-CccccccCCCceE--EEe--cCCHH
Q 011914 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FS--T-LYAPLIRDGRMEK--FYW--APTRE 311 (475)
Q Consensus 240 ~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~-~~--~-Ld~aLlR~GRfd~--~i~--~P~~e 311 (475)
++ ..+..++..+. ..+..+|+|++. |. . ..+.|++ |+.. .+. .|+.+
T Consensus 102 --~~-----~~lf~l~n~~~----------------~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e 156 (226)
T PRK09087 102 --DE-----TGLFHLINSVR----------------QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDA 156 (226)
T ss_pred --CH-----HHHHHHHHHHH----------------hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHH
Confidence 12 12333332211 223456666653 32 2 3677888 8753 333 59999
Q ss_pred HHHHHHHhhcCCC--CCChHHHHHHHhcCCCC
Q 011914 312 DRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQ 341 (475)
Q Consensus 312 eR~~Il~~~l~~~--~v~~~~l~~l~~~~~g~ 341 (475)
+|.+|++..+... .++.+.+.-++..+.+.
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~ 188 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMERS 188 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Confidence 9999999888754 46666777777775533
No 166
>PRK04132 replication factor C small subunit; Provisional
Probab=98.78 E-value=4.3e-08 Score=111.08 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=104.0
Q ss_pred EEEEc--CCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHh--CCceeEEecccc
Q 011914 162 LGIWG--GKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--GKMCCLFINDLD 232 (475)
Q Consensus 162 lLL~G--PPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~--~~p~ILfIDEiD 232 (475)
-+..| |++.|||++|+++|+++ +.+++.+++++..+ ...||++...+...... ....|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45568 99999999999999997 56899999986431 34666666554311111 134799999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 311 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~e 311 (475)
.+.. .....|+.+++ ++..++.+|++||++..+.++|++ |+..+-+ .|+.+
T Consensus 641 ~Lt~-------------~AQnALLk~lE-------------ep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~ 692 (846)
T PRK04132 641 ALTQ-------------DAQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDE 692 (846)
T ss_pred cCCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHH
Confidence 8742 12355666555 556788999999999999999999 8866665 57888
Q ss_pred HHHHHHHhhcCCCCC--ChHHHHHHHhcCCC
Q 011914 312 DRIGVCSGIFRTDNV--PKEDIVKLVDTFPG 340 (475)
Q Consensus 312 eR~~Il~~~l~~~~v--~~~~l~~l~~~~~g 340 (475)
+....++.+...+++ +.+.+..++....|
T Consensus 693 ~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 693 DIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 888888888776554 55666666655333
No 167
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.77 E-value=2e-08 Score=103.30 Aligned_cols=84 Identities=24% Similarity=0.339 Sum_probs=53.0
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHH-HHH---HH
Q 011914 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQR-YRE---AA 215 (475)
Q Consensus 143 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~-f~~---A~ 215 (475)
+...+++|..... ....+++||||||||||+|+.+||+++ |..+++++..++... ++.. |.. ..
T Consensus 168 ~~~~~~~f~~~f~-~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~--------l~~~~~~~~~~~~ 238 (329)
T PRK06835 168 ILEKCKNFIENFD-KNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI--------LREIRFNNDKELE 238 (329)
T ss_pred HHHHHHHHHHHHh-ccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH--------HHHHHhccchhHH
Confidence 3444444544222 123789999999999999999999995 778888888776532 1111 110 00
Q ss_pred HHHH-hCCceeEEeccccccc
Q 011914 216 DIIK-KGKMCCLFINDLDAGA 235 (475)
Q Consensus 216 ~~~~-~~~p~ILfIDEiDal~ 235 (475)
..++ -....+|+|||+....
T Consensus 239 ~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 239 EVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred HHHHHhccCCEEEEeccCCCC
Confidence 0011 2456799999998653
No 168
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.77 E-value=4.8e-08 Score=96.47 Aligned_cols=99 Identities=12% Similarity=0.274 Sum_probs=63.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHH----HHHHH-hCCceeEEecc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA----ADIIK-KGKMCCLFIND 230 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A----~~~~~-~~~p~ILfIDE 230 (475)
..+++|+|+||||||+|+.+||+++ |..++.++.+++.. .++..|..+ .++++ -....+|+|||
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~--------~l~~~~~~~~~~~~~~l~~l~~~dlLvIDD 170 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS--------AMKDTFSNSETSEEQLLNDLSNVDLLVIDE 170 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH--------HHHHHHhhccccHHHHHHHhccCCEEEEeC
Confidence 3589999999999999999999997 77888888776652 222222210 01112 23578999999
Q ss_pred ccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC
Q 011914 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (475)
Q Consensus 231 iDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~ 288 (475)
++..... . -....|..+++ .....+.++|+|||..
T Consensus 171 ig~~~~s-----~------~~~~~l~~Ii~------------~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 171 IGVQTES-----R------YEKVIINQIVD------------RRSSSKRPTGMLTNSN 205 (244)
T ss_pred CCCCCCC-----H------HHHHHHHHHHH------------HHHhCCCCEEEeCCCC
Confidence 9875321 1 11234444444 1223567999999975
No 169
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=7.8e-08 Score=99.30 Aligned_cols=136 Identities=14% Similarity=0.174 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCce-------------------------EEEecCccccC-------------
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINP-------------------------IMMSAGELESG------------- 198 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~-------------------------i~vs~s~l~s~------------- 198 (475)
+.|.++||+||+|+||+++|+.+|+.+...- +.+........
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 8899999999999999999999999964421 11211100000
Q ss_pred -CCC---------ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCC
Q 011914 199 -NAG---------EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268 (475)
Q Consensus 199 -~~G---------e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ld 268 (475)
-.| -....||.+.+........+...|++||++|.+-.. . ...|+..++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~------------A-aNaLLKtLE-------- 157 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA------------A-ANALLKTLE-------- 157 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH------------H-HHHHHHHhc--------
Confidence 000 012345555544321111455669999999977321 2 244555454
Q ss_pred CccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhh
Q 011914 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGI 320 (475)
Q Consensus 269 g~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~ 320 (475)
++.+++.+|.+|++++.|.|.+++ |+..+.+ .|+.++..+.+...
T Consensus 158 -----EPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 158 -----EPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred -----CCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHHc
Confidence 678889999999999999999999 9876655 68888888887653
No 170
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=1e-07 Score=97.00 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=94.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC--------ceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEe
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI--------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFI 228 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~--------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfI 228 (475)
+.|..+||+||+|+|||++|+++|+.+-. .++.+... .++.. ....||.+-+.+...-......|++|
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI 99 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIII 99 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCC--CHHHHHHHHHHHhcCcccCCceEEEE
Confidence 67889999999999999999999998632 22223221 11111 12346665554321111456679999
Q ss_pred ccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-c
Q 011914 229 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 307 (475)
Q Consensus 229 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~ 307 (475)
|++|.+.. .....|+..++ ++.+++.+|.+|+.++.+.+.+++ |+..+.+ .
T Consensus 100 ~~ad~m~~-------------~a~naLLK~LE-------------epp~~t~~il~~~~~~~ll~TI~S--Rc~~~~~~~ 151 (313)
T PRK05564 100 YNSEKMTE-------------QAQNAFLKTIE-------------EPPKGVFIILLCENLEQILDTIKS--RCQIYKLNR 151 (313)
T ss_pred echhhcCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEeCChHhCcHHHHh--hceeeeCCC
Confidence 99986622 12245555444 556777888888889999999999 8765544 4
Q ss_pred CCHHHHHHHHHhhcCCCCCChHHHHHHHhc
Q 011914 308 PTREDRIGVCSGIFRTDNVPKEDIVKLVDT 337 (475)
Q Consensus 308 P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~ 337 (475)
|+.++....+...+. .++.+.+..++..
T Consensus 152 ~~~~~~~~~l~~~~~--~~~~~~~~~l~~~ 179 (313)
T PRK05564 152 LSKEEIEKFISYKYN--DIKEEEKKSAIAF 179 (313)
T ss_pred cCHHHHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 788887777765543 4566665555543
No 171
>PRK08181 transposase; Validated
Probab=98.73 E-value=4e-08 Score=98.33 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=47.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccCCCCC-hHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~~~Ge-~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
..+++|+||||||||+||.+++++ .|..+++++..++...+... ......+.++ +-.++.+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~------~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIA------KLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHH------HHhcCCEEEEeccccc
Confidence 467999999999999999999986 37777778776665321000 0000111111 1345789999999876
Q ss_pred cc
Q 011914 235 AG 236 (475)
Q Consensus 235 ~~ 236 (475)
..
T Consensus 180 ~~ 181 (269)
T PRK08181 180 TK 181 (269)
T ss_pred cC
Confidence 43
No 172
>PRK06921 hypothetical protein; Provisional
Probab=98.73 E-value=9.9e-08 Score=95.36 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEecccc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLD 232 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~-~~~p~ILfIDEiD 232 (475)
...+++||||||+|||+|+.+||+++ |..+++++..++.. .++..|....+.++ -....+|+|||++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~--------~l~~~~~~~~~~~~~~~~~dlLiIDDl~ 187 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG--------DLKDDFDLLEAKLNRMKKVEVLFIDDLF 187 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH--------HHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 35789999999999999999999985 66777777655442 23333332222222 3457799999995
Q ss_pred c
Q 011914 233 A 233 (475)
Q Consensus 233 a 233 (475)
.
T Consensus 188 ~ 188 (266)
T PRK06921 188 K 188 (266)
T ss_pred c
Confidence 4
No 173
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=2.1e-07 Score=95.71 Aligned_cols=137 Identities=12% Similarity=0.100 Sum_probs=88.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+|||||+|+|||++|+++|+.+-.. +..+... .... ....||++-+
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~ 100 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKE 100 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---cccC--CHHHHHHHHH
Confidence 678999999999999999999999995321 2222111 0000 1234555444
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.....--.....|++|||+|.+-. .....|+..++ ++.+++.+|++|+.+..|.
T Consensus 101 ~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~LE-------------EPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 101 EFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKFLE-------------EPSGGTTAILLTENKHQIL 154 (329)
T ss_pred HHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHHhc-------------CCCCCceEEEEeCChHhCc
Confidence 331000134567999999986632 12245666444 5667788888998999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCChHH
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKED 330 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~ 330 (475)
+.+++ |+..+.+ .|+.++..++++. .+++.+.
T Consensus 155 ~TIrS--Rc~~i~~~~~~~~~~~~~L~~----~gi~~~~ 187 (329)
T PRK08058 155 PTILS--RCQVVEFRPLPPESLIQRLQE----EGISESL 187 (329)
T ss_pred HHHHh--hceeeeCCCCCHHHHHHHHHH----cCCChHH
Confidence 99999 8877666 5788877666653 3455543
No 174
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.66 E-value=1.4e-07 Score=96.11 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=48.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHH--HHHHH-hCCceeEEeccc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA--ADIIK-KGKMCCLFINDL 231 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A--~~~~~-~~~p~ILfIDEi 231 (475)
..++++||||+|||||+|+.++|+++ |..+..+..+++.. .++..|..- .+.++ -....+|+|||+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~--------~lk~~~~~~~~~~~l~~l~~~dlLiIDDi 226 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR--------ELKNSISDGSVKEKIDAVKEAPVLMLDDI 226 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH--------HHHHHHhcCcHHHHHHHhcCCCEEEEecC
Confidence 45899999999999999999999996 77777777776542 222222110 11121 345779999999
Q ss_pred ccc
Q 011914 232 DAG 234 (475)
Q Consensus 232 Dal 234 (475)
.+.
T Consensus 227 G~e 229 (306)
T PRK08939 227 GAE 229 (306)
T ss_pred CCc
Confidence 764
No 175
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=9e-07 Score=90.55 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------eEEEecCccccC---------CCC--------
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------PIMMSAGELESG---------NAG-------- 201 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------~i~vs~s~l~s~---------~~G-------- 201 (475)
+.|..+||+||+|+||+++|.++|+.+-.. ++.+.+.....+ ..|
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQ 103 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccccc
Confidence 668899999999999999999999995321 122222100000 000
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceE
Q 011914 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281 (475)
Q Consensus 202 e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~V 281 (475)
-....+|++-+.+...--.....|++||++|.+-. .....|+.+++ ++. +..+
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~-------------~aaNaLLK~LE-------------EPp-~~~f 156 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE-------------AAANALLKTLE-------------EPG-NGTL 156 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-------------HHHHHHHHHHh-------------CCC-CCeE
Confidence 00123455544332111145677999999987632 12245666555 334 5567
Q ss_pred EEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCCh--HHHHHHHhc
Q 011914 282 IVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPK--EDIVKLVDT 337 (475)
Q Consensus 282 I~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~--~~l~~l~~~ 337 (475)
|++|++++.|.|.+++ |+..+-+ .|+.++..++++........+. ..+..++.+
T Consensus 157 ILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~G 213 (314)
T PRK07399 157 ILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQG 213 (314)
T ss_pred EEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCC
Confidence 8888899999999999 8877666 5889999999887654443333 455555555
No 176
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=3.9e-07 Score=93.35 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=91.5
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCc---------------------eEEEecCccccCCCCC------hHHHHH
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------------PIMMSAGELESGNAGE------PAKLIR 208 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~---------------------~i~vs~s~l~s~~~Ge------~e~~Ir 208 (475)
-+.|..+||+||+|+||+++|.++|+.+-.. ++.+.. .-...|. ....||
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~---~p~~~~~k~~~~I~idqIR 99 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF---IPNRTGDKLRTEIVIEQVR 99 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec---CCCcccccccccccHHHHH
Confidence 3678999999999999999999999885321 122210 0000111 133455
Q ss_pred HHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC
Q 011914 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (475)
Q Consensus 209 ~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~ 288 (475)
++-+.+...-..+...|++||++|.+-. ...+.|++.++ ++..++.+|.+|+.+
T Consensus 100 ~l~~~~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------------EPp~~~~fiL~~~~~ 153 (319)
T PRK08769 100 EISQKLALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLE-------------EPSPGRYLWLISAQP 153 (319)
T ss_pred HHHHHHhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhh-------------CCCCCCeEEEEECCh
Confidence 5544332111134557999999998732 12245555554 667788899999999
Q ss_pred CCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCChHH
Q 011914 289 STLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKED 330 (475)
Q Consensus 289 ~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~ 330 (475)
+.|.|.+++ |+..+-+ .|+.++..+.+.. .+++..+
T Consensus 154 ~~lLpTIrS--RCq~i~~~~~~~~~~~~~L~~----~~~~~~~ 190 (319)
T PRK08769 154 ARLPATIRS--RCQRLEFKLPPAHEALAWLLA----QGVSERA 190 (319)
T ss_pred hhCchHHHh--hheEeeCCCcCHHHHHHHHHH----cCCChHH
Confidence 999999999 9987776 5888877776653 2455553
No 177
>PRK06526 transposase; Provisional
Probab=98.64 E-value=2.5e-08 Score=98.98 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=45.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
..+.+++|+||||||||+||.+|+.++ |..++.++..++....... .....+. ..+.+-..+.+|+|||++.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~---~~~~~~~--~~l~~l~~~dlLIIDD~g~ 170 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAA---HHAGRLQ--AELVKLGRYPLLIVDEVGY 170 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHH---HhcCcHH--HHHHHhccCCEEEEccccc
Confidence 456789999999999999999999884 5565555555443211000 0000000 1111134578999999987
Q ss_pred cc
Q 011914 234 GA 235 (475)
Q Consensus 234 l~ 235 (475)
+.
T Consensus 171 ~~ 172 (254)
T PRK06526 171 IP 172 (254)
T ss_pred CC
Confidence 64
No 178
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=3.6e-07 Score=93.77 Aligned_cols=132 Identities=9% Similarity=0.114 Sum_probs=91.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|.++||+||+|+||+++|+++|+.+-.. ++.+... .++.. ....||++-+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCC--CHHHHHHHHH
Confidence 678999999999999999999999996331 1112110 01111 2455666655
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+......+...|++||++|.+-. .....|++.++ ++.+++.+|.+|+.++.|.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE-------------EPp~~~~fiL~t~~~~~ll 151 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE-------------EPRPNTYFLLQADLSAALL 151 (325)
T ss_pred HHhhccccCCceEEEEechhhhCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEECChHhCc
Confidence 443222246667999999997632 12245656554 6788889999999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhh
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGI 320 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~ 320 (475)
|.+++ |+..+.+ .|+.++..+.+...
T Consensus 152 pTI~S--RC~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 152 PTIYS--RCQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred hHHHh--hceEEeCCCCCHHHHHHHHHHH
Confidence 99999 8877776 57788877777654
No 179
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.60 E-value=3e-08 Score=93.32 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=44.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccCC-----CCChHHHHHHHHHHHHHHHHhCCceeEEe
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGN-----AGEPAKLIRQRYREAADIIKKGKMCCLFI 228 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~~-----~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfI 228 (475)
+...+++|+||||||||+||.+++++ .|..+..++.++|.... .+..++ .++. -....+|+|
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~----~~~~------l~~~dlLil 114 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEE----LLKR------LKRVDLLIL 114 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCH----HHHH------HHTSSCEEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhh----hcCc------cccccEecc
Confidence 45679999999999999999999988 47888888887665321 111111 1211 234679999
Q ss_pred cccccc
Q 011914 229 NDLDAG 234 (475)
Q Consensus 229 DEiDal 234 (475)
||+...
T Consensus 115 DDlG~~ 120 (178)
T PF01695_consen 115 DDLGYE 120 (178)
T ss_dssp ETCTSS
T ss_pred ccccee
Confidence 999643
No 180
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.58 E-value=3.1e-06 Score=83.46 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=80.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCC-ceEE--EecCcc---------cc----CCCCCh-HHHHHHHHHHHHHHHHhC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGI-NPIM--MSAGEL---------ES----GNAGEP-AKLIRQRYREAADIIKKG 221 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~-~~i~--vs~s~l---------~s----~~~Ge~-e~~Ir~~f~~A~~~~~~~ 221 (475)
+..++|+||+|+|||++++.+++++.. .+.. +....+ .. ...+.. ...++.+..........+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 456899999999999999999999752 2221 111110 00 111111 122333333222233467
Q ss_pred CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC--CCCc----ccc
Q 011914 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF--STLY----APL 295 (475)
Q Consensus 222 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~--~~Ld----~aL 295 (475)
.+.+|+|||++.+... ....|..+.+ +.......+.|++++... +.+. ..+
T Consensus 123 ~~~vliiDe~~~l~~~-------------~~~~l~~l~~----------~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l 179 (269)
T TIGR03015 123 KRALLVVDEAQNLTPE-------------LLEELRMLSN----------FQTDNAKLLQIFLVGQPEFRETLQSPQLQQL 179 (269)
T ss_pred CCeEEEEECcccCCHH-------------HHHHHHHHhC----------cccCCCCeEEEEEcCCHHHHHHHcCchhHHH
Confidence 8899999999976321 1122222222 111122344555554321 1111 234
Q ss_pred ccCCCceEEEec--CCHHHHHHHHHhhcCC------CCCChHHHHHHHhcC
Q 011914 296 IRDGRMEKFYWA--PTREDRIGVCSGIFRT------DNVPKEDIVKLVDTF 338 (475)
Q Consensus 296 lR~GRfd~~i~~--P~~eeR~~Il~~~l~~------~~v~~~~l~~l~~~~ 338 (475)
.+ |+...+.+ .+.++..+++...+.. ..++.+.+..+.+..
T Consensus 180 ~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s 228 (269)
T TIGR03015 180 RQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFS 228 (269)
T ss_pred Hh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHc
Confidence 45 66555553 5888888888866642 246666666555543
No 181
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=6.6e-07 Score=99.09 Aligned_cols=143 Identities=16% Similarity=0.126 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE-ecCc-------------cccC--CCCChHHHHHHHHHHHHHHH--
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM-SAGE-------------LESG--NAGEPAKLIRQRYREAADII-- 218 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v-s~s~-------------l~s~--~~Ge~e~~Ir~~f~~A~~~~-- 218 (475)
.+...++|+||||||||++++++|++++..++.. +... +... .+......++.++..|....
T Consensus 108 ~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~ 187 (637)
T TIGR00602 108 APKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQM 187 (637)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcc
Confidence 3446799999999999999999999988765441 1110 0000 01112233444444443111
Q ss_pred ----HhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-C----
Q 011914 219 ----KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-S---- 289 (475)
Q Consensus 219 ----~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-~---- 289 (475)
......||||||++.++.+.. +.+...|.-+. ....++|+|++++.. .
T Consensus 188 ~g~~~~~~~~IILIDEiPn~~~r~~---------~~lq~lLr~~~--------------~e~~~~pLI~I~TE~~~~~~~ 244 (637)
T TIGR00602 188 LGDDLMTDKKIILVEDLPNQFYRDT---------RALHEILRWKY--------------VSIGRCPLVFIITESLEGDNN 244 (637)
T ss_pred cccccCCceeEEEeecchhhchhhH---------HHHHHHHHHHh--------------hcCCCceEEEEecCCcccccc
Confidence 024567999999998765411 12222222011 124567777755521 1
Q ss_pred ----------CCccccccCCCceEEEe-cCCHHHHHHHHHhhcC
Q 011914 290 ----------TLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFR 322 (475)
Q Consensus 290 ----------~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~ 322 (475)
.|.++++..-|...+-+ ..+.....+.|+.++.
T Consensus 245 ~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 245 QRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred ccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHH
Confidence 13367775335544444 3477776666665554
No 182
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=2.7e-07 Score=95.12 Aligned_cols=142 Identities=11% Similarity=0.071 Sum_probs=93.8
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCC------------------------ceEEEecCccccCCCCChHHHHHHHH
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRY 211 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~------------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f 211 (475)
-+.|..+||+||+|+||+++|.++|+.+-. .++.+.... ... .-....||++-
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKS--SLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccc--cCCHHHHHHHH
Confidence 377899999999999999999999999632 112221110 000 01234566655
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCC
Q 011914 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (475)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~L 291 (475)
+.+......+...|++||++|++-.. ....|++.++ ++..++.+|.+|+.++.|
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~l 151 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALLTDA-------------AANALLKTLE-------------EPPENTWFFLACREPARL 151 (334)
T ss_pred HHHhhccccCCceEEEEcchHhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhhC
Confidence 54432222566779999999976321 2245656554 677888999999999999
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCChHHH
Q 011914 292 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKEDI 331 (475)
Q Consensus 292 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~l 331 (475)
.|.+++ |+..+.. .|+.++..+.+... .+++.+..
T Consensus 152 LpTIrS--RCq~~~~~~~~~~~~~~~L~~~---~~~~~~~a 187 (334)
T PRK07993 152 LATLRS--RCRLHYLAPPPEQYALTWLSRE---VTMSQDAL 187 (334)
T ss_pred hHHHHh--ccccccCCCCCHHHHHHHHHHc---cCCCHHHH
Confidence 999999 8887655 57777777766432 23555543
No 183
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.57 E-value=8.9e-08 Score=98.61 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=54.3
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCC-cccCCCccccCCCCCceEEEecCCCC-CCccccccCCC
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIRDGR 300 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~-~v~ldg~~~~~~~~~V~VI~TTN~~~-~Ld~aLlR~GR 300 (475)
..+|||||++.+-. .+...|++.+++.. .++.+|.. .....++.+|+|+|..+ .++++++. |
T Consensus 129 ~GiL~lDEInrl~~-------------~~q~~Lle~mee~~v~v~r~G~~-~~~p~rfiviAt~NP~e~~l~~aLld--R 192 (334)
T PRK13407 129 RGYLYIDEVNLLED-------------HIVDLLLDVAQSGENVVEREGLS-IRHPARFVLVGSGNPEEGELRPQLLD--R 192 (334)
T ss_pred CCeEEecChHhCCH-------------HHHHHHHHHHHcCCeEEEECCeE-EecCCCEEEEecCCcccCCCCHHHHh--h
Confidence 35899999997632 23355665554221 23445541 12335677788888644 58889999 9
Q ss_pred ceEEEec--C-CHHHHHHHHHhhc
Q 011914 301 MEKFYWA--P-TREDRIGVCSGIF 321 (475)
Q Consensus 301 fd~~i~~--P-~~eeR~~Il~~~l 321 (475)
|...+.+ | +.++|.+|++...
T Consensus 193 F~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 193 FGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred cceEEEcCCCCcHHHHHHHHHHhh
Confidence 9988884 4 5589999998654
No 184
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.56 E-value=6.7e-08 Score=104.97 Aligned_cols=139 Identities=14% Similarity=0.200 Sum_probs=84.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEE----ecCccccCCCCChHHHHHHHHHHHH----HHHHhCCceeEEeccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNAGEPAKLIRQRYREAA----DIIKKGKMCCLFINDL 231 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~v----s~s~l~s~~~Ge~e~~Ir~~f~~A~----~~~~~~~p~ILfIDEi 231 (475)
..+||+|+||||||++|+++++......+.. ++..+.. ..++..+.... ..+......+++|||+
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-------~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi 309 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-------AVTRDPETREFTLEGGALVLADNGVCCIDEF 309 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-------cceEccCcceEEecCccEEecCCCEEEEech
Confidence 4699999999999999999999875432221 1111211 11111000000 0011234569999999
Q ss_pred cccccCCCCCcccchhhHHHHHHHHhhhcCCCcccC--CCccccCCCCCceEEEecCCCC-------------CCccccc
Q 011914 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL--PGMYNQEENPRVPIIVTGNDFS-------------TLYAPLI 296 (475)
Q Consensus 232 Dal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~l--dg~~~~~~~~~V~VI~TTN~~~-------------~Ld~aLl 296 (475)
|.+-.. ....|++.++. ..+.+ .|. ...-..+..||+|+|... .|+++++
T Consensus 310 ~~l~~~-------------~q~~L~e~me~-~~i~i~k~G~-~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lL 374 (509)
T smart00350 310 DKMDDS-------------DRTAIHEAMEQ-QTISIAKAGI-TTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPIL 374 (509)
T ss_pred hhCCHH-------------HHHHHHHHHhc-CEEEEEeCCE-EEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHh
Confidence 986432 22344444431 22222 232 112235778999999652 6999999
Q ss_pred cCCCceEEEe---cCCHHHHHHHHHhhcC
Q 011914 297 RDGRMEKFYW---APTREDRIGVCSGIFR 322 (475)
Q Consensus 297 R~GRfd~~i~---~P~~eeR~~Il~~~l~ 322 (475)
+ |||.++. .|+.+...+|.++++.
T Consensus 375 s--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 375 S--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred C--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9 9999887 4999999999987653
No 185
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=3.3e-07 Score=94.13 Aligned_cols=134 Identities=15% Similarity=0.200 Sum_probs=87.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC-------------------------ceEEEecCccccCCCC-----ChHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI-------------------------NPIMMSAGELESGNAG-----EPAKL 206 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~-------------------------~~i~vs~s~l~s~~~G-----e~e~~ 206 (475)
+.|..+||+||+|+|||++|+.+|+.+.. .|+.+++..-. ...| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 78899999999999999999999999632 23334332100 0011 12456
Q ss_pred HHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecC
Q 011914 207 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN 286 (475)
Q Consensus 207 Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN 286 (475)
||++.+.+...-......|++||+++.+-.. ....|+.+++ +...++.+|++|+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LE-------------ep~~~~~~Ilvth 151 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLE-------------EPPPQVVFLLVSH 151 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHH-------------hCcCCCEEEEEeC
Confidence 7776665542122455679999999976332 1234455444 2234567888999
Q ss_pred CCCCCccccccCCCceEEEe-cCCHHHHHHHHHh
Q 011914 287 DFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSG 319 (475)
Q Consensus 287 ~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~ 319 (475)
+++.+.+.+.+ |+..+.+ .|+.++..+.+..
T Consensus 152 ~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 152 AADKVLPTIKS--RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ChHhChHHHHH--HhhhhcCCCCCHHHHHHHHHh
Confidence 99999999988 8866666 5778877766653
No 186
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.54 E-value=4.3e-07 Score=90.21 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHH---HHHHHH-hCCceeEEecc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AADIIK-KGKMCCLFIND 230 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~---A~~~~~-~~~p~ILfIDE 230 (475)
.+.+++|+||||+|||+||-||++++ |..++.+..+++. ..|+..|.. ...+.+ -....+|+|||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~--------~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL--------SKLKAAFDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH--------HHHHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence 67899999999999999999999995 7888888888776 344444442 112333 45577999999
Q ss_pred cccc
Q 011914 231 LDAG 234 (475)
Q Consensus 231 iDal 234 (475)
+...
T Consensus 176 lG~~ 179 (254)
T COG1484 176 IGYE 179 (254)
T ss_pred ccCc
Confidence 9865
No 187
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.53 E-value=1.2e-07 Score=104.62 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=90.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCC--ceEEEecCccccCCCCChHHHHHHHHHHHH-----HHHHhCCceeEEecccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREAA-----DIIKKGKMCCLFINDLD 232 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~--~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----~~~~~~~p~ILfIDEiD 232 (475)
.+|||.|+||||||++|+++++.++. +|+.+..+......+|.. .+...+.... ..+......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 47999999999999999999998764 577777543333344431 1111111000 01112334599999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCC-cccCCCccccCCCCCceEEEecCCCC---CCccccccCCCceEEEe--
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYW-- 306 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~-~v~ldg~~~~~~~~~V~VI~TTN~~~---~Ld~aLlR~GRfd~~i~-- 306 (475)
.+-. .+...|++.+++.. .++-+|.. .....+..||+|+|..+ .|+++|+. ||...+.
T Consensus 95 rl~~-------------~~q~~Ll~al~~g~v~i~r~G~~-~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDD-------------GLSNRLLQALDEGVVIVEREGIS-VVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCH-------------HHHHHHHHHHHcCCeEEEECCCc-eeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 7643 23355666554211 12222331 12234677888888765 78999999 9998766
Q ss_pred -cCCHHHHHHHHHhhc
Q 011914 307 -APTREDRIGVCSGIF 321 (475)
Q Consensus 307 -~P~~eeR~~Il~~~l 321 (475)
+|..++|.+|++.++
T Consensus 159 ~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 159 DVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 588999999998765
No 188
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.53 E-value=2.8e-07 Score=86.06 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=72.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHH-----------HHHHHhCC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGK 222 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A-----------~~~~~~~~ 222 (475)
..|..|||+|++||||+++|++|-+.. +.+|+.++|+.+.. +..-.++|... ..+++...
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~ 93 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE------ELLESELFGHEKGAFTGARSDKKGLLEQAN 93 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTT
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc------chhhhhhhccccccccccccccCCceeecc
Confidence 345679999999999999999999875 46999999987631 22233455321 12334556
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCc
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 301 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRf 301 (475)
...||||||+.+... +...|++++++.+...+++. .....++.||+|||.. |. .+...|+|
T Consensus 94 ~GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~st~~~--l~-~~v~~g~f 154 (168)
T PF00158_consen 94 GGTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSD--KPVPVDVRIIASTSKD--LE-ELVEQGRF 154 (168)
T ss_dssp TSEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSS--SEEE--EEEEEEESS---HH-HHHHTTSS
T ss_pred ceEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccc--ccccccceEEeecCcC--HH-HHHHcCCC
Confidence 779999999987542 33555555553222222221 1224588899999863 22 24444566
No 189
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.52 E-value=2.2e-07 Score=99.33 Aligned_cols=139 Identities=13% Similarity=0.155 Sum_probs=74.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCC--ceEEEecC-ccccCCCCCh-HHHH--HHHHHHHHHHHHhC---CceeEEecc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESGNAGEP-AKLI--RQRYREAADIIKKG---KMCCLFIND 230 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~--~~i~vs~s-~l~s~~~Ge~-e~~I--r~~f~~A~~~~~~~---~p~ILfIDE 230 (475)
..+||+||||||||++|++++..++. +|..+.+. ..-....|.. -... ...|.... .+ ...+||+||
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~----~G~L~~A~lLfLDE 115 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLT----SGYLPEAEIVFLDE 115 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhc----CCccccccEEeecc
Confidence 45999999999999999999998753 33332221 0111222321 0111 11222110 11 234999999
Q ss_pred ccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCC---CccccccCCCceEEEec
Q 011914 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYWA 307 (475)
Q Consensus 231 iDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~---Ld~aLlR~GRfd~~i~~ 307 (475)
|..+.+ .+...|++.+. +..+..+|. ....+..++++|||.... ..+++.. ||-..+.+
T Consensus 116 I~rasp-------------~~QsaLLeam~-Er~~t~g~~--~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~v 177 (498)
T PRK13531 116 IWKAGP-------------AILNTLLTAIN-ERRFRNGAH--EEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWL 177 (498)
T ss_pred cccCCH-------------HHHHHHHHHHH-hCeEecCCe--EEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEEC
Confidence 974322 34466666664 344444443 122334445567774221 1237777 88656664
Q ss_pred --CC-HHHHHHHHHhh
Q 011914 308 --PT-REDRIGVCSGI 320 (475)
Q Consensus 308 --P~-~eeR~~Il~~~ 320 (475)
|+ .++-.+|+...
T Consensus 178 p~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 178 DKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCchHHHHHHHHcc
Confidence 44 45557777653
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.52 E-value=4e-07 Score=84.30 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=76.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC-----------------------ceEEEecCccccCCCCChHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------NPIMMSAGELESGNAGEPAKLIRQRYRE 213 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~-----------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~ 213 (475)
+.|..+||+||+|+||+++|.++|+.+-. .++.++...... .-....+|.+...
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHHHH
Confidence 67899999999999999999999999421 233333322100 0123555655554
Q ss_pred HHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcc
Q 011914 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (475)
Q Consensus 214 A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~ 293 (475)
...........|++|||+|.+.. .....|+..++ ++..++.+|++|+.++.|.+
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE-------------epp~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE-------------EPPENTYFILITNNPSKILP 147 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH-------------STTTTEEEEEEES-GGGS-H
T ss_pred HHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc-------------CCCCCEEEEEEECChHHChH
Confidence 32111145677999999997643 23355666555 66788899999999999999
Q ss_pred ccccCCCceEEEe
Q 011914 294 PLIRDGRMEKFYW 306 (475)
Q Consensus 294 aLlR~GRfd~~i~ 306 (475)
.+++ |+-.+-.
T Consensus 148 TI~S--Rc~~i~~ 158 (162)
T PF13177_consen 148 TIRS--RCQVIRF 158 (162)
T ss_dssp HHHT--TSEEEEE
T ss_pred HHHh--hceEEec
Confidence 9999 8765543
No 191
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.51 E-value=1.9e-07 Score=103.97 Aligned_cols=144 Identities=19% Similarity=0.206 Sum_probs=87.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh-----------------------------------CCceEEEecCccccCCCCChH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM-----------------------------------GINPIMMSAGELESGNAGEPA 204 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el-----------------------------------g~~~i~vs~s~l~s~~~Ge~e 204 (475)
.+|||+|+||||||++|+++++.+ ..+|+.+..+......+|...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 469999999999999999999987 235555554433333334210
Q ss_pred HHHHHHHHHH-----HHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCC-cccCCCccccCCCCC
Q 011914 205 KLIRQRYREA-----ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPR 278 (475)
Q Consensus 205 ~~Ir~~f~~A-----~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~-~v~ldg~~~~~~~~~ 278 (475)
+...+... ..++......|||||||+.+-. .+...|++.+++.. .++-+|.. .....+
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------------~~q~~Ll~~le~g~~~v~r~g~~-~~~~~~ 169 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------------HLVDVLLDAAAMGVNRVEREGLS-VSHPAR 169 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------------HHHHHHHHHHhcCCEEEEECCce-eeecCC
Confidence 11111100 0011122345999999997643 23355666555322 33334431 122367
Q ss_pred ceEEEecCCC-CCCccccccCCCceEEEec---CCHHHHHHHHHhhc
Q 011914 279 VPIIVTGNDF-STLYAPLIRDGRMEKFYWA---PTREDRIGVCSGIF 321 (475)
Q Consensus 279 V~VI~TTN~~-~~Ld~aLlR~GRfd~~i~~---P~~eeR~~Il~~~l 321 (475)
+.+|+|+|.. ..+.++|+. ||+..+.+ .+.+++.+|++..+
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 8889998854 468889999 99987774 36688888887544
No 192
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=2.4e-06 Score=87.62 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=90.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCC-----------------------ceEEEecCccccCCCCChHHHHHHHHH
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~-----------------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
-+.|..+||+||.|+||+.+|+.+|+.+-. .++.+.... .++.. ....||++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHH
Confidence 367899999999999999999999998532 222232211 00111 2345565544
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+......+...|++||++|.+-. .....|++.++ ++..++.+|.+|+.++.|-
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNE-------------SASNALLKTLE-------------EPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEECChhhCh
Confidence 332111245567999999997732 12245555454 6778889999999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHh
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSG 319 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~ 319 (475)
|.+++ |+..+.. .|+.++..+.+..
T Consensus 153 pTI~S--RCq~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 153 PTIVS--RCQQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHHh--cceeEeCCCCCHHHHHHHHHH
Confidence 99999 9987666 5888888877754
No 193
>PRK09183 transposase/IS protein; Provisional
Probab=98.50 E-value=1.2e-07 Score=94.33 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=47.0
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccCCCC-ChHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAG-EPAKLIRQRYREAADIIKKGKMCCLFINDL 231 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~~~G-e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEi 231 (475)
+.....++|+||||||||+|+.+++.+ .|..+..++..++...+.. .....+...+... ...+.+|+|||+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdl 173 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEI 173 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-----hcCCCEEEEccc
Confidence 344567999999999999999999876 4667777766555421100 0000122223221 356789999999
Q ss_pred ccc
Q 011914 232 DAG 234 (475)
Q Consensus 232 Dal 234 (475)
+..
T Consensus 174 g~~ 176 (259)
T PRK09183 174 GYL 176 (259)
T ss_pred ccC
Confidence 865
No 194
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.42 E-value=3.4e-06 Score=85.26 Aligned_cols=205 Identities=14% Similarity=0.154 Sum_probs=118.7
Q ss_pred HHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhC---------CceEEEecCccccC------------CCCC
Q 011914 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG------------NAGE 202 (475)
Q Consensus 144 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg---------~~~i~vs~s~l~s~------------~~Ge 202 (475)
...+..++..|....+.++||+|++|.|||++++..+.... ++++.|....--+. ....
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 34445556667666677899999999999999999998732 36666655321100 0000
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEE
Q 011914 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282 (475)
Q Consensus 203 ~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI 282 (475)
+...+......+..+++..++.+|+|||++.++.... ...+.+.+.|..|.+ .-+++||
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~LK~L~N---------------eL~ipiV 184 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNALKFLGN---------------ELQIPIV 184 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHHHHHhh---------------ccCCCeE
Confidence 1112233444455667789999999999998754311 012344444444332 4567777
Q ss_pred EecCC----CCCCccccccCCCceEEEe---cCCHHHHHHHHHhh---cC---CCCCChHHHHHHHhcCCCCchhhHHHH
Q 011914 283 VTGND----FSTLYAPLIRDGRMEKFYW---APTREDRIGVCSGI---FR---TDNVPKEDIVKLVDTFPGQSIDFFGAL 349 (475)
Q Consensus 283 ~TTN~----~~~Ld~aLlR~GRfd~~i~---~P~~eeR~~Il~~~---l~---~~~v~~~~l~~l~~~~~g~~i~f~gal 349 (475)
+.+.. .=.-|+-+-+ ||+.+.. -++.+- ..++..+ +. ..++...+++...-..++..++-...+
T Consensus 185 ~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef-~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 185 GVGTREAYRALRTDPQLAS--RFEPFELPRWELDEEF-RRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred EeccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 75522 2234666777 8887766 244443 3344432 22 245666677777666677777644455
Q ss_pred HHHhhHHHHHHHHHHhcchhhhhhhccC
Q 011914 350 RARVYDDEVRKWISEVGIERIGKRLVNS 377 (475)
Q Consensus 350 ~~~~~~~av~~~i~~~~~e~i~~~lv~~ 377 (475)
...++..|++. |.|.|....++.
T Consensus 262 l~~aA~~AI~s-----G~E~It~~~l~~ 284 (302)
T PF05621_consen 262 LNAAAIAAIRS-----GEERITREILDK 284 (302)
T ss_pred HHHHHHHHHhc-----CCceecHHHHhh
Confidence 55555554442 555555544433
No 195
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.41 E-value=1.5e-06 Score=75.98 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=45.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh--------CCceEEEecCcccc--------------CCCC-ChHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM--------GINPIMMSAGELES--------------GNAG-EPAKLIRQRYREA 214 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el--------g~~~i~vs~s~l~s--------------~~~G-e~e~~Ir~~f~~A 214 (475)
....++++||||+|||++++.+++++ ..+++.++++...+ .... .+... +++..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDE---LRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHH---HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHH---HHHHH
Confidence 34679999999999999999999997 67777777643321 0111 11222 22222
Q ss_pred HHHHHhCCceeEEeccccccc
Q 011914 215 ADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 215 ~~~~~~~~p~ILfIDEiDal~ 235 (475)
.+.++.....+|+|||+|.+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHH
T ss_pred HHHHHhcCCeEEEEeChHhcC
Confidence 223335556799999999875
No 196
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.40 E-value=3.9e-06 Score=81.95 Aligned_cols=151 Identities=13% Similarity=0.200 Sum_probs=93.6
Q ss_pred HHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH-
Q 011914 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK- 219 (475)
Q Consensus 144 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~- 219 (475)
..+++|-...-.-.+-..+||||..|||||+|++|+.++. |..+++|+..++.. +-.+++ .++
T Consensus 70 ~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~----~Lr~ 136 (287)
T COG2607 70 EALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVE----LLRA 136 (287)
T ss_pred HHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHH----HHhc
Confidence 3344444332223456889999999999999999999885 66788888776641 222333 222
Q ss_pred hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccC-
Q 011914 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD- 298 (475)
Q Consensus 220 ~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~- 298 (475)
....-|||+||+- ++... .--..|...+ +|- .+....+|+|-+|+||...|+..+...
T Consensus 137 ~~~kFIlFcDDLS-----Fe~gd-------~~yK~LKs~L--------eG~-ve~rP~NVl~YATSNRRHLl~e~~~dn~ 195 (287)
T COG2607 137 RPEKFILFCDDLS-----FEEGD-------DAYKALKSAL--------EGG-VEGRPANVLFYATSNRRHLLPEDMKDNE 195 (287)
T ss_pred CCceEEEEecCCC-----CCCCc-------hHHHHHHHHh--------cCC-cccCCCeEEEEEecCCcccccHhhhhCC
Confidence 5667799999884 22110 1112333322 232 124568899999999988877544321
Q ss_pred -------------------CCceEEEe--cCCHHHHHHHHHhhcCCCCCCh
Q 011914 299 -------------------GRMEKFYW--APTREDRIGVCSGIFRTDNVPK 328 (475)
Q Consensus 299 -------------------GRfd~~i~--~P~~eeR~~Il~~~l~~~~v~~ 328 (475)
-||...+- .++.++-..|++++.+..+++.
T Consensus 196 ~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 196 GSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 15554443 3677777788877777655554
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.39 E-value=3.3e-06 Score=87.46 Aligned_cols=35 Identities=23% Similarity=0.124 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCC-------ceEEEec
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSA 192 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~-------~~i~vs~ 192 (475)
..++++|+||||+|||++|++|++.++. +++.+..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 4588999999999999999999999987 7888877
No 198
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.35 E-value=1.7e-06 Score=89.66 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=53.5
Q ss_pred CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCC-CcccCCCccccCCCCCceEEEecCCCC-CCccccccCC
Q 011914 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP-TNVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIRDG 299 (475)
Q Consensus 222 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~-~~v~ldg~~~~~~~~~V~VI~TTN~~~-~Ld~aLlR~G 299 (475)
...+|||||++.+-++ +...|++.++.. ..++-+|.. .....++++|+|.|..+ .++++|+.
T Consensus 144 ~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~Lld-- 207 (350)
T CHL00081 144 NRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD-- 207 (350)
T ss_pred CCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHH--
Confidence 3569999999976432 234455555411 112223431 12234666777777654 68999999
Q ss_pred CceEEEe--cCC-HHHHHHHHHhhc
Q 011914 300 RMEKFYW--APT-REDRIGVCSGIF 321 (475)
Q Consensus 300 Rfd~~i~--~P~-~eeR~~Il~~~l 321 (475)
||...+. .|. .+.+.+|++...
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhhh
Confidence 9988877 465 699999998754
No 199
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.34 E-value=6.7e-07 Score=89.59 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=70.9
Q ss_pred cccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCC
Q 011914 125 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGN 199 (475)
Q Consensus 125 ~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~ 199 (475)
+++.+.|.|+ +.+.+++.+|.++..++.+.|+.+-|||++||||.+.++.||+.+ ..+++..--+++--..
T Consensus 80 L~~~lfGQHl----a~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 80 LARALFGQHL----AKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HHHHhhchHH----HHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 4555556444 346678889999999999999999999999999999999999994 2233322222221111
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 200 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 200 ~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
...-+..-.++-++.++.+..++.+|.+|||+|++-+
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 1111222223333344444588899999999998743
No 200
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.33 E-value=7.7e-07 Score=91.84 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=55.2
Q ss_pred CCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCC-CcccCCCccccCCCCCceEEEecCCCC-CCccccccC
Q 011914 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP-TNVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIRD 298 (475)
Q Consensus 221 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~-~~v~ldg~~~~~~~~~V~VI~TTN~~~-~Ld~aLlR~ 298 (475)
....+|||||++.+-. .+...|++.+++. ..++-+|... ....++.+|+|+|..+ .++++|+.
T Consensus 130 A~~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~g~~~v~r~G~~~-~~~~r~iviat~np~eg~l~~~Lld- 194 (337)
T TIGR02030 130 ANRGILYIDEVNLLED-------------HLVDVLLDVAASGWNVVEREGISI-RHPARFVLVGSGNPEEGELRPQLLD- 194 (337)
T ss_pred ccCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEEECCEEE-EcCCCEEEEeccccccCCCCHHHHh-
Confidence 4457999999997632 2335566655432 1233355421 2335677777888554 68999999
Q ss_pred CCceEEEec--CC-HHHHHHHHHhhc
Q 011914 299 GRMEKFYWA--PT-REDRIGVCSGIF 321 (475)
Q Consensus 299 GRfd~~i~~--P~-~eeR~~Il~~~l 321 (475)
||...+.+ |. .++|.+|++...
T Consensus 195 -Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 195 -RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred -hcceEEECCCCCCHHHHHHHHHhhh
Confidence 99887773 54 589999998744
No 201
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.33 E-value=1.6e-06 Score=89.25 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=89.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 224 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p~ 224 (475)
...|||+|++||||+++|++|.... +.+|+.++|+.+... ..-..+|.... ..+......
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~------~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG 95 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN------LLDSELFGHEAGAFTGAQKRHQGRFERADGG 95 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH------HHHHHHhccccccccCcccccCCchhhCCCC
Confidence 4559999999999999999998765 369999999865321 11112332110 012234577
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-------CCCcccccc
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIR 297 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-------~~Ld~aLlR 297 (475)
.|||||||.+-.. +...|+.++++.....+.+. .....++.||+|||.. ..+.+.|..
T Consensus 96 tL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~ 160 (329)
T TIGR02974 96 TLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCATNADLPALAAEGRFRADLLD 160 (329)
T ss_pred EEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCC--ceeccceEEEEechhhHHHHhhcCchHHHHHH
Confidence 9999999987432 33445555543221222221 1223567899988753 233444554
Q ss_pred CCCceE-EEecCCHHHHHH----HHHhhcCC----------CCCChHHHHHHHhc
Q 011914 298 DGRMEK-FYWAPTREDRIG----VCSGIFRT----------DNVPKEDIVKLVDT 337 (475)
Q Consensus 298 ~GRfd~-~i~~P~~eeR~~----Il~~~l~~----------~~v~~~~l~~l~~~ 337 (475)
|+.. .|.+|...+|.+ ++..++.. ..++.+.+..|...
T Consensus 161 --rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 161 --RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred --HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 5543 444787777643 33333321 24566666666553
No 202
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.28 E-value=1.7e-05 Score=94.14 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=74.7
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCce---EEEecCcc---ccCCC----CC-------hHHHHHHHHH------
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP---IMMSAGEL---ESGNA----GE-------PAKLIRQRYR------ 212 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~---i~vs~s~l---~s~~~----Ge-------~e~~Ir~~f~------ 212 (475)
...++.+.||||+|+|||+||+++++.+...| +.+....+ ...+. .. ..+.+.++..
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~ 283 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI 283 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc
Confidence 45568899999999999999999999865433 11111000 00000 00 0111111111
Q ss_pred ----HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC
Q 011914 213 ----EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (475)
Q Consensus 213 ----~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~ 288 (475)
..++.+ ..++.+|+|||++.. .+...|....+ |. ..+..||+||.+.
T Consensus 284 ~~~~~~~~~L-~~krvLLVLDdv~~~---------------~~l~~L~~~~~----------~~---~~GsrIIiTTrd~ 334 (1153)
T PLN03210 284 YHLGAMEERL-KHRKVLIFIDDLDDQ---------------DVLDALAGQTQ----------WF---GSGSRIIVITKDK 334 (1153)
T ss_pred CCHHHHHHHH-hCCeEEEEEeCCCCH---------------HHHHHHHhhCc----------cC---CCCcEEEEEeCcH
Confidence 111111 567889999998631 12233332221 11 3455688899875
Q ss_pred CCCccccccCCCceEEEe--cCCHHHHHHHHHhhcCCC
Q 011914 289 STLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTD 324 (475)
Q Consensus 289 ~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~~ 324 (475)
+.+ +....++.+. .|+.++..++|..+....
T Consensus 335 ~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~ 367 (1153)
T PLN03210 335 HFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFKK 367 (1153)
T ss_pred HHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcCC
Confidence 433 3224566666 589999999998775443
No 203
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.27 E-value=4.6e-06 Score=86.98 Aligned_cols=31 Identities=29% Similarity=0.555 Sum_probs=27.8
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCC
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~ 185 (475)
....|+|+.||||+|+|||+|.-+.++.+..
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 4568999999999999999999999998754
No 204
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.27 E-value=2e-06 Score=74.09 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=54.5
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCC
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 241 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~ 241 (475)
|.||||||+|||++|+.+|+.+.-.+-.-....+.....+ . +.|.-- .++ .|+++||+.......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~---~---~~w~gY-----~~q-~vvi~DD~~~~~~~~--- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPG---D---KFWDGY-----QGQ-PVVIIDDFGQDNDGY--- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCc---c---chhhcc-----CCC-cEEEEeecCcccccc---
Confidence 5799999999999999999886533211111111111111 1 122211 344 478899998653221
Q ss_pred cccchhhHHHHHHHHhhhc-CCCcccCCCcccc-CCCCCceEEEecCC
Q 011914 242 TQYTVNNQMVNATLMNIAD-NPTNVQLPGMYNQ-EENPRVPIIVTGND 287 (475)
Q Consensus 242 ~~~~~~~~~v~~~Ll~l~d-~~~~v~ldg~~~~-~~~~~V~VI~TTN~ 287 (475)
.. .....++++++ +|-.+.|.+.-.+ ..-....||+|||.
T Consensus 66 -----~~-~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 66 -----NY-SDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred -----ch-HHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 01 12344555554 4444444443111 12244678889984
No 205
>PF13173 AAA_14: AAA domain
Probab=98.26 E-value=3.9e-06 Score=74.21 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=45.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhC--CceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg--~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+.++|+||.|||||++++.+++++. -++++++............. +.+.|.+.. ...+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELI----KPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhh----ccCCcEEEEehhhhh
Confidence 5789999999999999999999876 67777777654321000000 111222111 236789999999876
No 206
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.25 E-value=1e-05 Score=71.93 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCChHHHHHHHHHHH
Q 011914 140 DKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREA 214 (475)
Q Consensus 140 d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A 214 (475)
-+.++..++.++..+..+.|+.+-|+||||||||++++.||+.+ +.+++..-.+..--.....-...-.++-+..
T Consensus 34 ~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 34 VEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 35567777888888888899999999999999999999999993 4555554444332222222223333333333
Q ss_pred HHHHHhCCceeEE
Q 011914 215 ADIIKKGKMCCLF 227 (475)
Q Consensus 215 ~~~~~~~~p~ILf 227 (475)
.+.+.....++.+
T Consensus 114 ~~~v~~C~rslFI 126 (127)
T PF06309_consen 114 RGNVSRCPRSLFI 126 (127)
T ss_pred HHHHHhCCcCeee
Confidence 4444444444443
No 207
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.25 E-value=6.3e-06 Score=73.68 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=46.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcccc----------------------CCCCChHHHHHHHHHHHHH
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----------------------GNAGEPAKLIRQRYREAAD 216 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s----------------------~~~Ge~e~~Ir~~f~~A~~ 216 (475)
++|+||||+|||+++..++... +.+++.++...... .+.... ........+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDP--AAARLLSKAER 79 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCC--cHHHHHHHHHH
Confidence 6899999999999999998886 45666665532221 011111 01111122223
Q ss_pred HHHhCCceeEEeccccccccC
Q 011914 217 IIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 217 ~~~~~~p~ILfIDEiDal~~~ 237 (475)
.+....|.+|+|||+..+...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRA 100 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHH
Confidence 344788999999999988653
No 208
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.25 E-value=3.7e-06 Score=86.45 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=91.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 224 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p~ 224 (475)
+..|||+|++||||+++|++|.... +.+|+.++|..+.. +..-..+|.... ..+......
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~------~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gG 102 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE------NLLDSELFGHEAGAFTGAQKRHPGRFERADGG 102 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH------HHHHHHHccccccccCCcccccCCchhccCCC
Confidence 4569999999999999999998775 35899999987631 111112222110 011234467
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-------CCCcccccc
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIR 297 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-------~~Ld~aLlR 297 (475)
.|||||+|.+... +...|++++++.......+. .....++.||+||+.. ..+.+.|..
T Consensus 103 tL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~ 167 (326)
T PRK11608 103 TLFLDELATAPML-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167 (326)
T ss_pred eEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhHHHHHHcCCchHHHHH
Confidence 8999999987432 23445555542111111211 1112467889888763 344555665
Q ss_pred CCCce-EEEecCCHHHHHH----HHHhhcCC----------CCCChHHHHHHHhc-CCCC
Q 011914 298 DGRME-KFYWAPTREDRIG----VCSGIFRT----------DNVPKEDIVKLVDT-FPGQ 341 (475)
Q Consensus 298 ~GRfd-~~i~~P~~eeR~~----Il~~~l~~----------~~v~~~~l~~l~~~-~~g~ 341 (475)
||. ..|.+|...+|.+ |+.+++.. ..++.+.+..|... |+|.
T Consensus 168 --~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGN 225 (326)
T PRK11608 168 --RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGN 225 (326)
T ss_pred --hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcH
Confidence 663 4566888777743 33333321 23566666666543 4433
No 209
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.24 E-value=1.2e-05 Score=87.92 Aligned_cols=160 Identities=13% Similarity=0.178 Sum_probs=88.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 224 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p~ 224 (475)
...|||+|++|||||++|++|.... +.+|+.++|..+.. +..-..+|.... ..++.....
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~G 292 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE------TLLESELFGHEKGAFTGAIAQRKGRFELADGG 292 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH------HHHHHHHcCCCCCccCCCCcCCCCcccccCCC
Confidence 4569999999999999999999885 46999999987631 111112222110 011133467
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCc---
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM--- 301 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRf--- 301 (475)
+|||||||.+-.. +...|+.++++.......+. .....++.||+||+..- .. +...|+|
T Consensus 293 tL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~l--~~-~~~~~~f~~~ 354 (534)
T TIGR01817 293 TLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRDL--EE-AVAKGEFRAD 354 (534)
T ss_pred eEEEechhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCCH--HH-HHHcCCCCHH
Confidence 8999999987432 33455555542111111211 11123578899887531 11 2233344
Q ss_pred -----eE-EEecCCHHHH----HHHHHhhcCC--------CCCChHHHHHHHhc-CCCCc
Q 011914 302 -----EK-FYWAPTREDR----IGVCSGIFRT--------DNVPKEDIVKLVDT-FPGQS 342 (475)
Q Consensus 302 -----d~-~i~~P~~eeR----~~Il~~~l~~--------~~v~~~~l~~l~~~-~~g~~ 342 (475)
.. .|.+|...+| ..|+.+++.. ..++.+.+..|... |+|..
T Consensus 355 L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNv 414 (534)
T TIGR01817 355 LYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNV 414 (534)
T ss_pred HHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChH
Confidence 32 4557766655 3444444331 24666677666654 44443
No 210
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.1e-05 Score=91.62 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=76.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCc------cc---cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE------LE---SGNAGEPAKLIRQRYREAADIIKKGKMC 224 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~------l~---s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ 224 (475)
+++.-++|.||.|+|||-||+++|..+ .-.++.++.++ +. .+|+|.++.- ++.+..+ +...+
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~Lteavr----rrP~s 662 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEAVK----RRPYS 662 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHHHh----cCCce
Confidence 356779999999999999999999995 34788888874 22 2467766542 2333222 77789
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 289 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~ 289 (475)
||+|||||+..+ .+...|++++|.-...--.|. .....+++||+|+|.-.
T Consensus 663 VVLfdeIEkAh~-------------~v~n~llq~lD~GrltDs~Gr--~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 663 VVLFEEIEKAHP-------------DVLNILLQLLDRGRLTDSHGR--EVDFKNAIFIMTSNVGS 712 (898)
T ss_pred EEEEechhhcCH-------------HHHHHHHHHHhcCccccCCCc--EeeccceEEEEecccch
Confidence 999999997543 244556666663332222222 34568999999998743
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.18 E-value=1.4e-05 Score=89.28 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=87.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC---CceEEEecCccccCCCCChHHHHHHHHHHH---H-----HHHHhCCceeEE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA---A-----DIIKKGKMCCLF 227 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A---~-----~~~~~~~p~ILf 227 (475)
...|||+|++||||+++|++|.+... .+|+.++|..+-. +..-.++|..+ . ..++......||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~------~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD------EALAEEFLGSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh------HHHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence 34499999999999999999988753 6999999986631 11112233211 0 011134467899
Q ss_pred eccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCc------
Q 011914 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM------ 301 (475)
Q Consensus 228 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRf------ 301 (475)
||||+.+-.. +...|+.++++.....+++. ....-++.||+|||..- ..+...|+|
T Consensus 422 ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 422 LEKVEYLSPE-------------LQSALLQVLKTGVITRLDSR--RLIPVDVRVIATTTADL---AMLVEQNRFSRQLYY 483 (638)
T ss_pred EcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEeccCCH---HHHHhcCCChHHHhh
Confidence 9999977432 33455555543222222221 01112577899888642 223333455
Q ss_pred ---eEEEecCCHHHHH----HHHHhhcCC--------CCCChHHHHHHHhc
Q 011914 302 ---EKFYWAPTREDRI----GVCSGIFRT--------DNVPKEDIVKLVDT 337 (475)
Q Consensus 302 ---d~~i~~P~~eeR~----~Il~~~l~~--------~~v~~~~l~~l~~~ 337 (475)
...+.+|...+|. .+++.++.. ..++.+.+..|...
T Consensus 484 ~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 484 ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 3344578877774 233333321 24566666666553
No 212
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.17 E-value=3.4e-06 Score=82.01 Aligned_cols=113 Identities=14% Similarity=0.169 Sum_probs=67.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh-CC----ceEEEecCccccCCCCC-hHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM-GI----NPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el-g~----~~i~vs~s~l~s~~~Ge-~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
..++|.||||||||+-+.++|+++ |- -++.++++.-. |- ..++--+.|.+-+-.+..+.-.||++||+|+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR----GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADS 124 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER----GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADS 124 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc----ccHHHHHHHHHHHHhhccCCCCceeEEEeeccch
Confidence 458899999999999999999994 42 34556655332 21 1122223444332111135566999999997
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEE
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~ 304 (475)
+... .| +.|..-++ -......++.++|....|-+++.+ |+-..
T Consensus 125 MT~g----AQ---------QAlRRtME-------------iyS~ttRFalaCN~s~KIiEPIQS--RCAiL 167 (333)
T KOG0991|consen 125 MTAG----AQ---------QALRRTME-------------IYSNTTRFALACNQSEKIIEPIQS--RCAIL 167 (333)
T ss_pred hhhH----HH---------HHHHHHHH-------------HHcccchhhhhhcchhhhhhhHHh--hhHhh
Confidence 6431 22 22222111 112334577888988888888877 65443
No 213
>PF05729 NACHT: NACHT domain
Probab=98.17 E-value=2.5e-05 Score=70.36 Aligned_cols=145 Identities=21% Similarity=0.223 Sum_probs=75.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCC---------ceEEEecCccccCC-CCChHHHHHHHHHH--------HHHHHHhC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGN-AGEPAKLIRQRYRE--------AADIIKKG 221 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~---------~~i~vs~s~l~s~~-~Ge~e~~Ir~~f~~--------A~~~~~~~ 221 (475)
+.++|+|+||+|||++++.++..+.. .++.++........ .......|...+.. ....++..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35899999999999999999988421 22333433332211 00111122211111 11233367
Q ss_pred CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCc
Q 011914 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 301 (475)
Q Consensus 222 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRf 301 (475)
...+|+||.+|.+...... .........|..++. ....+++.+|+|++.. ..+. +.+...-
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~------------~~~~~~~~liit~r~~-~~~~-~~~~~~~ 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP------------QALPPGVKLIITSRPR-AFPD-LRRRLKQ 141 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh------------hccCCCCeEEEEEcCC-hHHH-HHHhcCC
Confidence 7889999999988764221 112233344444433 0124566777777543 2211 2221111
Q ss_pred eEEEec--CCHHHHHHHHHhhcCC
Q 011914 302 EKFYWA--PTREDRIGVCSGIFRT 323 (475)
Q Consensus 302 d~~i~~--P~~eeR~~Il~~~l~~ 323 (475)
...+.+ -+.+++.++++.+++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhhc
Confidence 123333 4888888988888753
No 214
>PHA00729 NTP-binding motif containing protein
Probab=98.17 E-value=3.7e-06 Score=82.00 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=24.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGIN 186 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~ 186 (475)
..++|+|+||||||++|.+|+++++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 579999999999999999999998643
No 215
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.17 E-value=3.1e-06 Score=87.49 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhC--CceEEEecCccccCCCCChHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA 214 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg--~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A 214 (475)
..+++||.||||||||.||-++|+++| .||..++++++.+..+..+| .+.+.|++|
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~Rra 106 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRA 106 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCS
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHh
Confidence 458999999999999999999999998 79999999999988777665 455677755
No 216
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.15 E-value=1.8e-05 Score=89.06 Aligned_cols=159 Identities=17% Similarity=0.252 Sum_probs=88.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccC-----CCCC--------hHHHHHHHHHHHHHHHHhC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGE--------PAKLIRQRYREAADIIKKG 221 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~-----~~Ge--------~e~~Ir~~f~~A~~~~~~~ 221 (475)
....|||+|++|||||++|++|.... +.+|+.++|..+... ..|. .... ...|. ..
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le-------~a 469 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQR-IGRFE-------LA 469 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccch-hhHHH-------hc
Confidence 34569999999999999999998874 469999999765321 1121 0000 01222 34
Q ss_pred CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC--C-----Cccc
Q 011914 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--T-----LYAP 294 (475)
Q Consensus 222 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~--~-----Ld~a 294 (475)
...+||||||+.+-.. +...|+.++++.....+.+. .....++.||+||+..- . +.+.
T Consensus 470 ~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l~~~~~~~~f~~~ 534 (686)
T PRK15429 470 DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAATNRDLKKMVADREFRSD 534 (686)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeCCCCHHHHHHcCcccHH
Confidence 4679999999987432 23445554442211112211 12235678999987642 1 1112
Q ss_pred cccCCCceE-EEecCCHHHHHH----HHHhhcCC---------CCCChHHHHHHHh-cCCCC
Q 011914 295 LIRDGRMEK-FYWAPTREDRIG----VCSGIFRT---------DNVPKEDIVKLVD-TFPGQ 341 (475)
Q Consensus 295 LlR~GRfd~-~i~~P~~eeR~~----Il~~~l~~---------~~v~~~~l~~l~~-~~~g~ 341 (475)
|.. |+.. .|.+|...+|.+ +++.++.. ..++.+.+..|.. .|+|.
T Consensus 535 L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGN 594 (686)
T PRK15429 535 LYY--RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGN 594 (686)
T ss_pred HHh--ccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCc
Confidence 222 3322 345787777753 33333321 1356677776654 44444
No 217
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.12 E-value=3e-05 Score=85.17 Aligned_cols=139 Identities=19% Similarity=0.223 Sum_probs=91.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccccC----------CCCChH------HHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------NAGEPA------KLIRQRYRE 213 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~s~----------~~Ge~e------~~Ir~~f~~ 213 (475)
..+.+.|-||||||.++..+-+++ .+.++.|++-.|.+. +.|+.. ..+...|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 368899999999999999998864 357778888666531 222211 111122220
Q ss_pred HHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcc
Q 011914 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (475)
Q Consensus 214 A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~ 293 (475)
.. .+..++||+|||+|.+..+. | ..|.++.+ |-..+..++.||+.+|--+....
T Consensus 503 ~k---~~~~~~VvLiDElD~Lvtr~----Q---------dVlYn~fd----------Wpt~~~sKLvvi~IaNTmdlPEr 556 (767)
T KOG1514|consen 503 PK---PKRSTTVVLIDELDILVTRS----Q---------DVLYNIFD----------WPTLKNSKLVVIAIANTMDLPER 556 (767)
T ss_pred CC---CCCCCEEEEeccHHHHhccc----H---------HHHHHHhc----------CCcCCCCceEEEEecccccCHHH
Confidence 00 15668999999999998863 2 56788888 88888899999998887653222
Q ss_pred ----ccccCCCceEEEe-cCCHHHHHHHHHhhcCCC
Q 011914 294 ----PLIRDGRMEKFYW-APTREDRIGVCSGIFRTD 324 (475)
Q Consensus 294 ----aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~ 324 (475)
-+-++--|.+.-+ ..+.++..+|+...+...
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 2222112333333 469999999998887763
No 218
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.10 E-value=3.2e-06 Score=84.85 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=82.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCc---eEEEecCccccCCCCChHHHHHHHHHHHHHHH-------HhCCceeEEe
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGNAGEPAKLIRQRYREAADII-------KKGKMCCLFI 228 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~---~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~-------~~~~p~ILfI 228 (475)
-+.+||+||+|||||++++..-.++.-. ...+..+.. -+...+..+.+...+.. ..++.+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 3569999999999999999877765432 222333321 12333333322110000 0345679999
Q ss_pred ccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccC-----CCCCceEEEecCCCC---CCccccccCCC
Q 011914 229 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE-----ENPRVPIIVTGNDFS---TLYAPLIRDGR 300 (475)
Q Consensus 229 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~-----~~~~V~VI~TTN~~~---~Ld~aLlR~GR 300 (475)
||+.--....-+ + +....+|.++++ ..|.|+.. ...++-+|+|.|... .|++.|+| .
T Consensus 107 DDlN~p~~d~yg-t------q~~iElLRQ~i~------~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 107 DDLNMPQPDKYG-T------QPPIELLRQLID------YGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp ETTT-S---TTS---------HHHHHHHHHHH------CSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred cccCCCCCCCCC-C------cCHHHHHHHHHH------hcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 999865443321 2 345567777665 44555432 235788888887532 47788888 7
Q ss_pred ceEEEe-cCCHHHHHHHHHhhcC
Q 011914 301 MEKFYW-APTREDRIGVCSGIFR 322 (475)
Q Consensus 301 fd~~i~-~P~~eeR~~Il~~~l~ 322 (475)
|..... .|+.+....|+..++.
T Consensus 172 f~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 172 FNILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEEEE----TCCHHHHHHHHHHH
T ss_pred eEEEEecCCChHHHHHHHHHHHh
Confidence 765555 6999999988876654
No 219
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.10 E-value=9.2e-05 Score=73.83 Aligned_cols=150 Identities=19% Similarity=0.314 Sum_probs=93.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh-C--CceEEEe------c-------CccccC--------CCCChHH-HHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM-G--INPIMMS------A-------GELESG--------NAGEPAK-LIRQRYREA 214 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el-g--~~~i~vs------~-------s~l~s~--------~~Ge~e~-~Ir~~f~~A 214 (475)
.++++|||.|+||-+.+.++-+++ | +.=+.+. + +.+.|. -+|...+ .|.++.++.
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 579999999999999999999984 2 1101100 0 011111 2333333 344455443
Q ss_pred HHHHH-----hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC
Q 011914 215 ADIIK-----KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 289 (475)
Q Consensus 215 ~~~~~-----~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~ 289 (475)
.+... +..-.|++|.|+|.+... .| ..|..-++ ....++-+|+.+|..+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~d----AQ---------~aLRRTME-------------kYs~~~RlIl~cns~S 168 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRD----AQ---------HALRRTME-------------KYSSNCRLILVCNSTS 168 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHH----HH---------HHHHHHHH-------------HHhcCceEEEEecCcc
Confidence 31111 233469999999988543 22 33333121 4457788999999999
Q ss_pred CCccccccCCCce-EEEecCCHHHHHHHHHhhcCCCCCC--hHHHHHHHhc
Q 011914 290 TLYAPLIRDGRME-KFYWAPTREDRIGVCSGIFRTDNVP--KEDIVKLVDT 337 (475)
Q Consensus 290 ~Ld~aLlR~GRfd-~~i~~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~~~ 337 (475)
.+-+|+++ |+= ..+-.|+.++...++...+.++++. .+-+..+++.
T Consensus 169 riIepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k 217 (351)
T KOG2035|consen 169 RIIEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK 217 (351)
T ss_pred cchhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 99999988 652 2233699999999999999886554 4455556655
No 220
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.09 E-value=4.9e-06 Score=90.14 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
....++|.||||||||++++.++..
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~l 234 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGI 234 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcc
Confidence 3467999999999999999999875
No 221
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.09 E-value=6.7e-06 Score=84.19 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=50.2
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhC--CceEEEecCccccCCCCChHHHHHHHHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 215 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg--~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~ 215 (475)
|...-+++||.||||||||.||-+||+++| .||..++++++.+..+..++.+ .+.|++|.
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L-~qa~RraI 122 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEAL-TQALRRAI 122 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHH-HHHHHHhh
Confidence 344568999999999999999999999997 6999999999998777776654 56677663
No 222
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.08 E-value=1.5e-05 Score=85.71 Aligned_cols=190 Identities=18% Similarity=0.317 Sum_probs=108.0
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccc--
Q 011914 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-- 196 (475)
Q Consensus 122 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~-- 196 (475)
.|+|+++++. +|.+. .+...+|.+ .+.+..|||.|..||||..+|++|-+.. +-+|+.++|+-+-
T Consensus 241 ~y~f~~Iig~---S~~m~--~~~~~akr~-----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 241 KYTFDDIIGE---SPAML--RVLELAKRI-----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred ccchhhhccC---CHHHH--HHHHHHHhh-----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 3566777665 44433 234455554 4566789999999999999999998885 4599999996542
Q ss_pred ---cCCCCChHHHHHHHHHHHHH-----HHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCC
Q 011914 197 ---SGNAGEPAKLIRQRYREAAD-----IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268 (475)
Q Consensus 197 ---s~~~Ge~e~~Ir~~f~~A~~-----~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ld 268 (475)
|..+|-. +..|.-|.. +++.....-||+|||..+-- .+..-|+..+.+-+...+.
T Consensus 311 LlESELFGye----~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl-------------~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 311 LLESELFGYE----KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL-------------PLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred HHHHHHhCcC----CccccccccCCCCcceeeccCCeEEehhhccCCH-------------HHHHHHHHHHhhceEEecC
Confidence 2111211 011222210 01122245799999986522 3334556655544444555
Q ss_pred CccccCCCCCceEEEecCCCCCCccccccCCCceE--EEe-------cCCHHHHH----HHHHhhcCC---------CCC
Q 011914 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYW-------APTREDRI----GVCSGIFRT---------DNV 326 (475)
Q Consensus 269 g~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~--~i~-------~P~~eeR~----~Il~~~l~~---------~~v 326 (475)
|. +...-+|-||+|||+. + ..++..|+|-. +|. +|...+|. .+...++.+ ..+
T Consensus 374 ~t--~~~~vDVRIIAATN~n--L-~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 374 GT--KPIPVDVRIIAATNRN--L-EKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred CC--CceeeEEEEEeccCcC--H-HHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 44 2334678999999984 2 23455666633 332 36666653 222233321 346
Q ss_pred ChHHHHHHHh-cCCCCch
Q 011914 327 PKEDIVKLVD-TFPGQSI 343 (475)
Q Consensus 327 ~~~~l~~l~~-~~~g~~i 343 (475)
+.+.+..|.. .|||..-
T Consensus 449 s~~a~~~L~~y~WPGNVR 466 (560)
T COG3829 449 SPDALALLLRYDWPGNVR 466 (560)
T ss_pred CHHHHHHHHhCCCCchHH
Confidence 6776666544 4555543
No 223
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.08 E-value=1.6e-05 Score=86.56 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=91.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 223 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p 223 (475)
.+..|||+|++||||+++|++|.... +.+|+.++|..+... ..-..+|.... ..++....
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~------~~e~~lfG~~~g~~~ga~~~~~g~~~~a~g 282 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES------LAESELFGHVKGAFTGAISNRSGKFELADG 282 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH------HHHHHhcCccccccCCCcccCCcchhhcCC
Confidence 35569999999999999999999884 469999999876421 01112222110 01123446
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-------CCccccc
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------TLYAPLI 296 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-------~Ld~aLl 296 (475)
..|||||||.+-.. +...|+.++++.....+.+. .....++.||+|||..- .+.+.|.
T Consensus 283 GtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~ 347 (509)
T PRK05022 283 GTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATNRDLREEVRAGRFRADLY 347 (509)
T ss_pred CEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCC--cceecceEEEEecCCCHHHHHHcCCccHHHH
Confidence 78999999987532 22445555542222122221 12235678999997742 1222332
Q ss_pred cCCCceE-EEecCCHHHHHH-H---HHhhcC---------CCCCChHHHHHHHh-cCCCCchh
Q 011914 297 RDGRMEK-FYWAPTREDRIG-V---CSGIFR---------TDNVPKEDIVKLVD-TFPGQSID 344 (475)
Q Consensus 297 R~GRfd~-~i~~P~~eeR~~-I---l~~~l~---------~~~v~~~~l~~l~~-~~~g~~i~ 344 (475)
. |+.. .|.+|...+|.+ | +++++. ...++.+.+..|.. .|+|..-+
T Consensus 348 ~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrE 408 (509)
T PRK05022 348 H--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRE 408 (509)
T ss_pred h--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHH
Confidence 2 3333 345787777642 2 333322 13466677777665 44444333
No 224
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.06 E-value=1.8e-05 Score=86.46 Aligned_cols=133 Identities=14% Similarity=0.220 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH-----------hCCceEEEecCccccCCCCChHHHHHHHHHH-------HH----
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK-----------MGINPIMMSAGELESGNAGEPAKLIRQRYRE-------AA---- 215 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e-----------lg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~-------A~---- 215 (475)
....|||+|++||||+++|++|-+. .+-+|+.++|+.+... ..-..+|.. +.
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~------lleseLFG~~~gaftga~~~~~ 314 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES------LLEAELFGYEEGAFTGSRRGGR 314 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChh------hHHHHhcCCccccccCcccccc
Confidence 3456999999999999999999887 3569999999876421 111122221 10
Q ss_pred -HHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccc
Q 011914 216 -DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294 (475)
Q Consensus 216 -~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~a 294 (475)
.+++......||||||+.+-.. +...|+.++++-+...+.+. ....-++.||+|||..- . .
T Consensus 315 ~Gl~e~A~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~L--~-~ 376 (538)
T PRK15424 315 AGLFEIAHGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCDL--E-E 376 (538)
T ss_pred CCchhccCCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCCH--H-H
Confidence 0122334668999999977432 33445555543222222222 11234568999887641 1 2
Q ss_pred cccCCCceE---------EEecCCHHHHH
Q 011914 295 LIRDGRMEK---------FYWAPTREDRI 314 (475)
Q Consensus 295 LlR~GRfd~---------~i~~P~~eeR~ 314 (475)
+...|+|.. .+.+|...+|.
T Consensus 377 ~v~~g~Fr~dL~yrL~~~~I~lPPLReR~ 405 (538)
T PRK15424 377 DVRQGRFRRDLFYRLSILRLQLPPLRERV 405 (538)
T ss_pred HHhcccchHHHHHHhcCCeecCCChhhch
Confidence 233344432 33368777764
No 225
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.05 E-value=2.1e-05 Score=85.85 Aligned_cols=134 Identities=14% Similarity=0.212 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHH-------HH-----HHHHhCC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-------AA-----DIIKKGK 222 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~-------A~-----~~~~~~~ 222 (475)
....|||+|++||||+++|++|.+.. +.+|+.++|+.+... ..-..+|.. |. .+++...
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~------lleseLFG~~~gaftga~~~~~~Gl~e~A~ 307 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES------LLEAELFGYEEGAFTGARRGGRTGLIEAAH 307 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh------HHHHHhcCCcccccccccccccccchhhcC
Confidence 34669999999999999999998774 469999999876321 111122221 10 0112334
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC--CCcc-----cc
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYA-----PL 295 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~--~Ld~-----aL 295 (475)
...||||||+.+-.. +...|+.++.+.+...+.+. ....-++.||+|||..- .+.. .|
T Consensus 308 gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~~--~~~~~dvRiIaat~~~l~~~v~~g~fr~dL 372 (526)
T TIGR02329 308 RGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGGT--EPVPVDVRVVAATHCALTTAVQQGRFRRDL 372 (526)
T ss_pred CceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCCC--ceeeecceEEeccCCCHHHHhhhcchhHHH
Confidence 668999999987432 33445555543222222221 11224567899887642 1111 22
Q ss_pred ccCCCce-EEEecCCHHHHH
Q 011914 296 IRDGRME-KFYWAPTREDRI 314 (475)
Q Consensus 296 lR~GRfd-~~i~~P~~eeR~ 314 (475)
.. |+. ..+.+|...+|.
T Consensus 373 ~~--rL~~~~I~lPPLReR~ 390 (526)
T TIGR02329 373 FY--RLSILRIALPPLRERP 390 (526)
T ss_pred HH--hcCCcEEeCCCchhch
Confidence 22 332 344578777764
No 226
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.04 E-value=7.4e-05 Score=81.42 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=31.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
....+++||+||||||||++++++|+++|..+.+..
T Consensus 42 ~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 42 SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 344578999999999999999999999999887754
No 227
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.04 E-value=3.6e-05 Score=84.04 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=87.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCceeE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMCCL 226 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p~IL 226 (475)
-|||+|++||||+++|++|-... +.+|+.++|..+... ..-..+|..+. .+++......|
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~------~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL 302 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD------VVESELFGHAPGAYPNALEGKKGFFEQANGGSV 302 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH------HHHHHhcCCCCCCcCCcccCCCChhhhcCCCEE
Confidence 49999999999999999986664 358999999876421 11112222110 01123346789
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-------CCccccccCC
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------TLYAPLIRDG 299 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-------~Ld~aLlR~G 299 (475)
||||||.+... +...|++++.+.+.-...+. .....++.||+||+..- .+.+.|..
T Consensus 303 ~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~-- 365 (520)
T PRK10820 303 LLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQKNLVELVQKGEFREDLYY-- 365 (520)
T ss_pred EEeChhhCCHH-------------HHHHHHHHHhcCCcccCCCC--cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--
Confidence 99999987432 22444454442211111111 11234677899886641 23333444
Q ss_pred CceE-EEecCCHHHHH-HH---HHhhcC---------CCCCChHHHHHHHhc-CCCCc
Q 011914 300 RMEK-FYWAPTREDRI-GV---CSGIFR---------TDNVPKEDIVKLVDT-FPGQS 342 (475)
Q Consensus 300 Rfd~-~i~~P~~eeR~-~I---l~~~l~---------~~~v~~~~l~~l~~~-~~g~~ 342 (475)
|+.. .+.+|...+|. .| ++.++. ...++.+.+..|... |+|..
T Consensus 366 rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNv 423 (520)
T PRK10820 366 RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNV 423 (520)
T ss_pred hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHH
Confidence 5443 34478777765 23 223322 124667777777655 44443
No 228
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.03 E-value=6.7e-06 Score=93.50 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=76.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHH-HH----HHH-HHHHHHHhCCceeEEeccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-RQ----RYR-EAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~I-r~----~f~-~A~~~~~~~~p~ILfIDEiDa 233 (475)
..|||+|.||||||.+|+++++...... ++++.... .+|-+.... +. -|. ++ ..+......+++|||+|+
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~-ytsG~~~s--~vgLTa~~~~~d~~tG~~~le~-GaLvlAdgGtL~IDEidk 568 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSI-YTSGKSSS--SVGLTASIKFNESDNGRAMIQP-GAVVLANGGVCCIDELDK 568 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccc-cCCCCCCc--cccccchhhhcccccCcccccC-CcEEEcCCCeEEecchhh
Confidence 4799999999999999999998643221 11111000 011111100 00 000 00 011123346999999998
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCccc--CCCccccCCCCCceEEEecCCC-------------CCCccccccC
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ--LPGMYNQEENPRVPIIVTGNDF-------------STLYAPLIRD 298 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~--ldg~~~~~~~~~V~VI~TTN~~-------------~~Ld~aLlR~ 298 (475)
+-.. ....|++.+.. ..+. -.|. ...-..+..||+|+|.. -.|+++|++
T Consensus 569 ms~~-------------~Q~aLlEaMEq-qtIsI~KaGi-~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS- 632 (915)
T PTZ00111 569 CHNE-------------SRLSLYEVMEQ-QTVTIAKAGI-VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT- 632 (915)
T ss_pred CCHH-------------HHHHHHHHHhC-CEEEEecCCc-ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh-
Confidence 7432 22445554432 1221 1132 11234678899999874 247899999
Q ss_pred CCceEEEe---cCCHHHHHHHHHhh
Q 011914 299 GRMEKFYW---APTREDRIGVCSGI 320 (475)
Q Consensus 299 GRfd~~i~---~P~~eeR~~Il~~~ 320 (475)
|||.++. .|+.+.=..|-+++
T Consensus 633 -RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 633 -RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred -hhcEEEEecCCCChHHHHHHHHHH
Confidence 9999988 37766555554433
No 229
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.02 E-value=3.6e-05 Score=80.59 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=61.5
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCC-CcccCCCccccCCCCCceEEEecCCC-CCCccccccCCC
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP-TNVQLPGMYNQEENPRVPIIVTGNDF-STLYAPLIRDGR 300 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~-~~v~ldg~~~~~~~~~V~VI~TTN~~-~~Ld~aLlR~GR 300 (475)
..||+|||+..+.. .+...|++.+..- +.|+.+|... ....++++|+|.|.. ..|-|.|+. |
T Consensus 145 RGIlYvDEvnlL~d-------------~lvd~LLd~aaeG~n~vereGisi-~hpa~fvligTmNPEeGeLrpqLlD--R 208 (423)
T COG1239 145 RGILYVDEVNLLDD-------------HLVDALLDVAAEGVNDVEREGISI-RHPARFLLIGTMNPEEGELRPQLLD--R 208 (423)
T ss_pred CCEEEEeccccccH-------------HHHHHHHHHHHhCCceeeeCceee-ccCccEEEEeecCccccccchhhHh--h
Confidence 45999999986632 2335566655533 6778888622 455778889999976 368888998 8
Q ss_pred ceEEEe---cCCHHHHHHHHHhhcCC
Q 011914 301 MEKFYW---APTREDRIGVCSGIFRT 323 (475)
Q Consensus 301 fd~~i~---~P~~eeR~~Il~~~l~~ 323 (475)
|...+. ..+.++|.+|.+.-+.-
T Consensus 209 fg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 209 FGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred hcceeeccCCCCHHHHHHHHHHHHHh
Confidence 888877 46899999999866654
No 230
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.01 E-value=6e-06 Score=83.49 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=81.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCc------eEEEecCccccCCCCChHHHHHHHHHHHHH--HHH-hCCceeEEeccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGEPAKLIRQRYREAAD--IIK-KGKMCCLFINDL 231 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~------~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~--~~~-~~~p~ILfIDEi 231 (475)
++|+|||||||||+...+.|..+-.+ +..++++.-. -.+- .+.-...|.-++. +.. ...+..+++||+
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r--gid~-vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR--GIDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc--CCcc-hHHHHHHHHhhccceeccccCceeEEEecch
Confidence 89999999999999999999996442 1122222111 1111 1221233443320 110 136889999999
Q ss_pred cccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEecC-CH
Q 011914 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-TR 310 (475)
Q Consensus 232 Dal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~~P-~~ 310 (475)
|++... .| ..|..... ....+.-++..+|.+..+-|+++. ||.++-+.| +.
T Consensus 141 DaMT~~----AQ---------nALRRvie-------------k~t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~pl~~ 192 (360)
T KOG0990|consen 141 DAMTRD----AQ---------NALRRVIE-------------KYTANTRFATISNPPQKIHPAQQS--RCTRFRFAPLTM 192 (360)
T ss_pred hHhhHH----HH---------HHHHHHHH-------------HhccceEEEEeccChhhcCchhhc--ccccCCCCCCCh
Confidence 987543 22 22222222 335666777889999999999998 888877743 44
Q ss_pred HHHHHHHHhhcCCC
Q 011914 311 EDRIGVCSGIFRTD 324 (475)
Q Consensus 311 eeR~~Il~~~l~~~ 324 (475)
+.-..++.++...+
T Consensus 193 ~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 193 AQQTERQSHIRESE 206 (360)
T ss_pred hhhhhHHHHHHhcc
Confidence 55555566666554
No 231
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.00 E-value=5.7e-05 Score=71.99 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=52.7
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccC--------CCCC-----------hHHHHHHHH
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG--------NAGE-----------PAKLIRQRY 211 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~--------~~Ge-----------~e~~Ir~~f 211 (475)
.|+.....++|+||||+|||++|..++.+ .|...++++..++... +.+. ....+...+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 36666788999999999999999988865 3567788877541100 0000 000011123
Q ss_pred HHHHHHHHhCCceeEEecccccccc
Q 011914 212 REAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
....+++....+++|+||-+.+++.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhH
Confidence 3333344466899999999999864
No 232
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.99 E-value=5e-05 Score=74.54 Aligned_cols=140 Identities=15% Similarity=0.109 Sum_probs=82.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r 238 (475)
..+-.++||+|||||..++.+|+.+|..++..++++.. ....+.++|.=+ ....+-+.|||++.+-..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~-----~~~GaW~cfdefnrl~~~- 99 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGL-----AQSGAWLCFDEFNRLSEE- 99 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH-
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHH-----hhcCchhhhhhhhhhhHH-
Confidence 35677899999999999999999999999999998755 256677777655 234788999999976332
Q ss_pred CCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecC----CCCCCccccccCCCceEEEe-cCCHHHH
Q 011914 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 313 (475)
Q Consensus 239 ~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN----~~~~Ld~aLlR~GRfd~~i~-~P~~eeR 313 (475)
--++-.+.+......+..+...+.+.|.-. .-.++.-+.+|.| ....||+.|+. -|--+-. .||.+..
T Consensus 100 ----vLS~i~~~i~~i~~al~~~~~~~~~~g~~i-~l~~~~~iFiT~np~y~gr~~LP~nLk~--lFRpvam~~PD~~~I 172 (231)
T PF12774_consen 100 ----VLSVISQQIQSIQDALRAKQKSFTLEGQEI-KLNPNCGIFITMNPGYAGRSELPENLKA--LFRPVAMMVPDLSLI 172 (231)
T ss_dssp ----HHHHHHHHHHHHHHHHHCTSSEEEETTCEE-E--TT-EEEEEE-B-CCCC--S-HHHCT--TEEEEE--S--HHHH
T ss_pred ----HHHHHHHHHHHHHHhhcccccccccCCCEE-EEccceeEEEeeccccCCcccCCHhHHH--HhheeEEeCCCHHHH
Confidence 112222333333333334445555555421 1123445566666 34578888877 4434433 6998876
Q ss_pred HHHH
Q 011914 314 IGVC 317 (475)
Q Consensus 314 ~~Il 317 (475)
.+++
T Consensus 173 ~ei~ 176 (231)
T PF12774_consen 173 AEIL 176 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 233
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=4.2e-05 Score=77.34 Aligned_cols=121 Identities=12% Similarity=-0.005 Sum_probs=79.6
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCc----------------eEEEecCccccCCCCChHHHHHHHHHHHHHHHH
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~----------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~ 219 (475)
-+.|..+||+||+|+||+.+|.++|..+-+. ++.+.+.. .+.. -....+|++-++....-.
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~ 92 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPY 92 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCcc
Confidence 3778999999999999999999999986331 11121100 0000 123455555544421111
Q ss_pred hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCC
Q 011914 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299 (475)
Q Consensus 220 ~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~G 299 (475)
.+...|++||++|.+... ....|+++++ ++.+++.+|..|+.++.|.|.+++
T Consensus 93 e~~~kv~ii~~ad~mt~~-------------AaNaLLK~LE-------------EPp~~~~fiL~~~~~~~ll~TI~S-- 144 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLD-------------AISAFLKVLE-------------DPPQHGVIILTSAKPQRLPPTIRS-- 144 (290)
T ss_pred CCCceEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCeEEEEEeCChhhCcHHHHh--
Confidence 355579999999977432 2245666554 677888999999999999999998
Q ss_pred CceEEEec
Q 011914 300 RMEKFYWA 307 (475)
Q Consensus 300 Rfd~~i~~ 307 (475)
|+..+.+.
T Consensus 145 Rcq~~~~~ 152 (290)
T PRK05917 145 RSLSIHIP 152 (290)
T ss_pred cceEEEcc
Confidence 88776653
No 234
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.93 E-value=0.0001 Score=73.23 Aligned_cols=151 Identities=19% Similarity=0.155 Sum_probs=76.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH--hCCce---EEEecCcccc--------------C-----CCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK--MGINP---IMMSAGELES--------------G-----NAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e--lg~~~---i~vs~s~l~s--------------~-----~~Ge~e~~Ir~~f~ 212 (475)
.....+.|+|++|+|||+||..+++. ..-.| +.++.+.-.+ . ...+.+... ..+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~l~ 95 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQ-DQLR 95 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHH-HHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccch
Confidence 56789999999999999999999988 33322 2233221110 0 011112222 2222
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
+. + ..++++|+||+++... .+ ..+...+. ....+.-||+||.......
T Consensus 96 ~~---L-~~~~~LlVlDdv~~~~--------------~~-~~l~~~~~-------------~~~~~~kilvTTR~~~v~~ 143 (287)
T PF00931_consen 96 EL---L-KDKRCLLVLDDVWDEE--------------DL-EELREPLP-------------SFSSGSKILVTTRDRSVAG 143 (287)
T ss_dssp HH---H-CCTSEEEEEEEE-SHH--------------HH--------H-------------CHHSS-EEEEEESCGGGGT
T ss_pred hh---h-ccccceeeeeeecccc--------------cc-cccccccc-------------ccccccccccccccccccc
Confidence 22 2 5669999999987432 01 11111000 1123567889997754221
Q ss_pred cccccCCCceEEEec--CCHHHHHHHHHhhcCCCC-----CChHHHHHHHhcCCCCchh
Q 011914 293 APLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN-----VPKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 293 ~aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~~~~-----v~~~~l~~l~~~~~g~~i~ 344 (475)
. +- .-...+.+ .+.++..++|+....... ...+...++++.+.|-.+.
T Consensus 144 ~-~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 198 (287)
T PF00931_consen 144 S-LG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLA 198 (287)
T ss_dssp T-HH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHH
T ss_pred c-cc---cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 11 11344553 688899999997765422 1123444566665555553
No 235
>PRK15115 response regulator GlrR; Provisional
Probab=97.93 E-value=5.3e-05 Score=80.44 Aligned_cols=155 Identities=15% Similarity=0.224 Sum_probs=88.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 224 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p~ 224 (475)
...++|+|++|||||++|+++.+.. +.+|+.+++..+... ..-..+|..+. ...+.....
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ------LLESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH------HHHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 3458999999999999999998884 468999999876321 11112332111 011234456
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCc---
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM--- 301 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRf--- 301 (475)
.|||||+|.+... +...|+..+++.....+.+. .....++.||+||+.. ++. +...|+|
T Consensus 231 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~--~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~ 292 (444)
T PRK15115 231 TLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSN--RDIDIDVRIISATHRD--LPK-AMARGEFRED 292 (444)
T ss_pred EEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCC--ceeeeeEEEEEeCCCC--HHH-HHHcCCccHH
Confidence 8999999987542 22445554442222122211 1123467899998853 333 3344566
Q ss_pred ------eEEEecCCHHHHHH----HHHhhcCC---------CCCChHHHHHHHhc
Q 011914 302 ------EKFYWAPTREDRIG----VCSGIFRT---------DNVPKEDIVKLVDT 337 (475)
Q Consensus 302 ------d~~i~~P~~eeR~~----Il~~~l~~---------~~v~~~~l~~l~~~ 337 (475)
...+.+|...+|.+ |++.++.. ..++.+.+..|...
T Consensus 293 l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (444)
T PRK15115 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 (444)
T ss_pred HHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 23344688888742 33333321 13667777776654
No 236
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.90 E-value=0.00012 Score=67.70 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+.+.-++++|+||+|||+++.-|+..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 456779999999999999999999885
No 237
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.89 E-value=7.4e-05 Score=79.36 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=86.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHH-HHHHHHHH-----------HHHHhCCc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLI-RQRYREAA-----------DIIKKGKM 223 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~I-r~~f~~A~-----------~~~~~~~p 223 (475)
...++|+|++||||+++|+++.... +.+|+.++|..+.. ..+ ..+|.... ..+.....
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-------NLLESELFGYEKGAFTGAVKQTLGKIEYAHG 234 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-------HHHHHHhcCCCCCCcCCCccCCCCceeECCC
Confidence 3558899999999999999998875 35899999987631 222 12232110 01113446
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-------CCCccccc
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLI 296 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-------~~Ld~aLl 296 (475)
.+|||||++.+... +...|+.++.+-....+++. .....++.||+||+.. ..+.+.|.
T Consensus 235 gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 299 (445)
T TIGR02915 235 GTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGR--EEIPVDVRIVCATNQDLKRMIAEGTFREDLF 299 (445)
T ss_pred CEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEecCCCHHHHHHcCCccHHHH
Confidence 78999999987432 23445554442111111211 1122467889988764 22333332
Q ss_pred cCCCceE-EEecCCHHHHHH----HHHhhcC-------C--CCCChHHHHHHHhc
Q 011914 297 RDGRMEK-FYWAPTREDRIG----VCSGIFR-------T--DNVPKEDIVKLVDT 337 (475)
Q Consensus 297 R~GRfd~-~i~~P~~eeR~~----Il~~~l~-------~--~~v~~~~l~~l~~~ 337 (475)
. |+.. .+.+|...+|.+ |++.++. . ..++.+.+..|...
T Consensus 300 ~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (445)
T TIGR02915 300 Y--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH 352 (445)
T ss_pred H--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC
Confidence 2 3332 344788777754 3333332 1 24666677776554
No 238
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.86 E-value=0.00014 Score=67.59 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=25.2
Q ss_pred EEEEcCCCccHHHHHHHHHHH---hCCceEEEec
Q 011914 162 LGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~ 192 (475)
++++||||||||+++..++.+ .|.++++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 789999999999999988775 3666766665
No 239
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.84 E-value=6.8e-05 Score=80.25 Aligned_cols=161 Identities=14% Similarity=0.208 Sum_probs=91.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 224 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p~ 224 (475)
...++|+|++|||||++|+++.... +.+|+.++|+.+.. +..-..+|.... ..+......
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~------~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK------DLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH------HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 4569999999999999999999885 45899999987631 111122332110 001133456
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-------CCCcccccc
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIR 297 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-------~~Ld~aLlR 297 (475)
.|||||+|.+... +...|+.++++.....+++. .....++.||+||+.. ..+.+.|..
T Consensus 235 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 299 (469)
T PRK10923 235 TLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGY--APVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 (469)
T ss_pred EEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCC--CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH
Confidence 8999999987442 22445555553222222222 1123467899988763 234445555
Q ss_pred CCCce-EEEecCCHHHHHH----HHHhhcCC---------CCCChHHHHHHHh-cCCCCc
Q 011914 298 DGRME-KFYWAPTREDRIG----VCSGIFRT---------DNVPKEDIVKLVD-TFPGQS 342 (475)
Q Consensus 298 ~GRfd-~~i~~P~~eeR~~----Il~~~l~~---------~~v~~~~l~~l~~-~~~g~~ 342 (475)
|+. ..|.+|...+|.+ |+.+++.. ..++.+.+..|.. .|+|..
T Consensus 300 --~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 357 (469)
T PRK10923 300 --RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNV 357 (469)
T ss_pred --HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChH
Confidence 553 4455776666543 44444431 1356666666654 444443
No 240
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.84 E-value=2.7e-05 Score=81.75 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH----hCCceEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 223 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e----lg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p 223 (475)
-..+||+|++||||+++|++|... .+.+|+.++|+.+..... ..++|..++ .+++....
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~------~~eLFG~~kGaftGa~~~k~Glfe~A~G 174 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQ------EAELFGHEKGAFTGAQGGKAGLFEQANG 174 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHH------HHHHhccccceeecccCCcCchheecCC
Confidence 366999999999999999998754 356999999976643211 111332211 11123446
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC--CCCcc--ccccCC
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF--STLYA--PLIRDG 299 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~--~~Ld~--aLlR~G 299 (475)
..||+|||..+-.. ++..|+.++++-+...+.+. .....+|.+|++||.. +.+-. .|.|+
T Consensus 175 GtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rvG~~--~~~~~dVRli~AT~~~l~~~~~~g~dl~~r- 238 (403)
T COG1221 175 GTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRVGGS--QPRPVDVRLICATTEDLEEAVLAGADLTRR- 238 (403)
T ss_pred CEEehhhhhhCCHh-------------HHHHHHHHHHcCceEecCCC--CCcCCCceeeeccccCHHHHHHhhcchhhh-
Confidence 69999999876432 33556666665555555552 3456789999988652 22222 23221
Q ss_pred CceEEEecCCHHHHH
Q 011914 300 RMEKFYWAPTREDRI 314 (475)
Q Consensus 300 Rfd~~i~~P~~eeR~ 314 (475)
|+...|.+|...+|.
T Consensus 239 l~~~~I~LPpLrER~ 253 (403)
T COG1221 239 LNILTITLPPLRERK 253 (403)
T ss_pred hcCceecCCChhhch
Confidence 445556688887774
No 241
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.83 E-value=8.2e-05 Score=76.39 Aligned_cols=107 Identities=17% Similarity=0.256 Sum_probs=61.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCce-EEEecCccc-------cCCCCChHHHHHHHHHHHHHHHHhCCceeEE
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP-IMMSAGELE-------SGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~-i~vs~s~l~-------s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILf 227 (475)
..+|+|+.||||-|+|||+|.-..+..+...- ..+....+. ....|++ .- +...|.++ ...-.||.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dp---l~~iA~~~--~~~~~vLC 135 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DP---LPPIADEL--AAETRVLC 135 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-Cc---cHHHHHHH--HhcCCEEE
Confidence 35789999999999999999999999865422 111111110 0011221 00 01112211 23345999
Q ss_pred eccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-CCCcc
Q 011914 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-STLYA 293 (475)
Q Consensus 228 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-~~Ld~ 293 (475)
|||+.. .++.+.|+...|++-+= ..+|.+++|+|.+ +.|++
T Consensus 136 fDEF~V----------tDI~DAMiL~rL~~~Lf---------------~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 136 FDEFEV----------TDIADAMILGRLLEALF---------------ARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred eeeeee----------cChHHHHHHHHHHHHHH---------------HCCcEEEEeCCCChHHhcc
Confidence 999973 23345666666665332 3688899999863 44443
No 242
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.81 E-value=2.1e-05 Score=68.05 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=28.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
.|+|.||||+|||++|+.+|+.+|++++.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 37899999999999999999999988776654
No 243
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.79 E-value=4.3e-05 Score=87.29 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=101.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCCh-------HHHHHHHHHHH-HHHHHhCCceeEEecccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP-------AKLIRQRYREA-ADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~-------e~~Ir~~f~~A-~~~~~~~~p~ILfIDEiD 232 (475)
.++++||||+|||+.+.++|.++|..++..+++...+++.... ...|..-|..- ........--||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 4799999999999999999999999999999987776543221 11222222000 000001222399999999
Q ss_pred ccccC-CCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcc-ccccCCCceEEEecCCH
Q 011914 233 AGAGR-MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAPTR 310 (475)
Q Consensus 233 al~~~-r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~-aLlR~GRfd~~i~~P~~ 310 (475)
.++.. |+ ....+..++. ...+|||+|+|+.+.... ++.|. .++..+--|+.
T Consensus 439 ~~~~~dRg-----------~v~~l~~l~~---------------ks~~Piv~~cndr~~p~sr~~~~~-~~~l~f~kP~~ 491 (871)
T KOG1968|consen 439 GMFGEDRG-----------GVSKLSSLCK---------------KSSRPLVCTCNDRNLPKSRALSRA-CSDLRFSKPSS 491 (871)
T ss_pred cccchhhh-----------hHHHHHHHHH---------------hccCCeEEEecCCCCccccchhhh-cceeeecCCcH
Confidence 88762 22 1233333333 467899999999887666 34432 26666667999
Q ss_pred HHHHHHHHhhcCCC--CCChHHHHHHHhcCCCCchh
Q 011914 311 EDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 311 eeR~~Il~~~l~~~--~v~~~~l~~l~~~~~g~~i~ 344 (475)
+.+..-+..++..+ .++.+.+.+++... ++|+.
T Consensus 492 ~~i~~ri~si~~se~~ki~~~~l~~~s~~~-~~DiR 526 (871)
T KOG1968|consen 492 ELIRSRIMSICKSEGIKISDDVLEEISKLS-GGDIR 526 (871)
T ss_pred HHHHhhhhhhhcccceecCcHHHHHHHHhc-ccCHH
Confidence 99888777776653 46677777777764 44553
No 244
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.00056 Score=72.54 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=94.7
Q ss_pred HHHHhhhcCC-CCCCCeEEEEEcCCCccHHHHHHHHHHHhC-----CceEEEecCcccc--------------CCCCC-h
Q 011914 145 HITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELES--------------GNAGE-P 203 (475)
Q Consensus 145 ~i~k~~l~~~-~~~~p~glLL~GPPGtGKT~LAkaIA~elg-----~~~i~vs~s~l~s--------------~~~Ge-~ 203 (475)
.++++|.... ..+.+..+.+.|-||||||.+..-+..... ...+++++.+|.. ...+. +
T Consensus 160 ~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~ 239 (529)
T KOG2227|consen 160 DIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGT 239 (529)
T ss_pred HHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCch
Confidence 3445554322 245678899999999999999887766642 2446677765421 01111 1
Q ss_pred HHHHHHHHHHHHHHHHhC-CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEE
Q 011914 204 AKLIRQRYREAADIIKKG-KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282 (475)
Q Consensus 204 e~~Ir~~f~~A~~~~~~~-~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI 282 (475)
+......|.+ ..+.. .|-||++||+|.+..+.. ..|..+.. |-.-...++++|
T Consensus 240 ~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr~~-------------~vLy~lFe----------wp~lp~sr~iLi 293 (529)
T KOG2227|consen 240 GMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITRSQ-------------TVLYTLFE----------WPKLPNSRIILI 293 (529)
T ss_pred hHHHHHHHHH---HHhcccceEEEEechhhHHhhccc-------------ceeeeehh----------cccCCcceeeee
Confidence 1222222221 11223 478999999999985532 23444443 666778999999
Q ss_pred EecCCCCCCccccccC----CCceEEEe--cCCHHHHHHHHHhhcCCC
Q 011914 283 VTGNDFSTLYAPLIRD----GRMEKFYW--APTREDRIGVCSGIFRTD 324 (475)
Q Consensus 283 ~TTN~~~~Ld~aLlR~----GRfd~~i~--~P~~eeR~~Il~~~l~~~ 324 (475)
+.+|..+.-|..|-|- +---..+. ..+.++..+|++..+...
T Consensus 294 GiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 294 GIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred eehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 9999988766655431 11112233 359999999999888764
No 245
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.77 E-value=0.00027 Score=75.25 Aligned_cols=160 Identities=15% Similarity=0.233 Sum_probs=87.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 224 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p~ 224 (475)
...++++|++||||+++|+++.... +.+|+.+++..+... ..-..+|.... ..+......
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES------LLESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH------HHHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 3569999999999999999998774 468999999876311 11112222110 011133456
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceE-
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 303 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~- 303 (475)
+|||||+|.+... +...|+.++++-.....++. .....++.||+|||..- ..+.+.|+|..
T Consensus 240 tl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~l---~~~~~~g~~~~~ 301 (457)
T PRK11361 240 TLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGH--QTIKVDIRIIAATNRDL---QAMVKEGTFRED 301 (457)
T ss_pred EEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 8999999987432 23445555542221122221 11234678999998631 12334444433
Q ss_pred --------EEecCCHHHHHH----HHHhhcCC---------CCCChHHHHHHHh-cCCCCc
Q 011914 304 --------FYWAPTREDRIG----VCSGIFRT---------DNVPKEDIVKLVD-TFPGQS 342 (475)
Q Consensus 304 --------~i~~P~~eeR~~----Il~~~l~~---------~~v~~~~l~~l~~-~~~g~~ 342 (475)
.+.+|...+|.+ ++..++.. ..++.+.+..|.. .|+|..
T Consensus 302 l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 362 (457)
T PRK11361 302 LFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNI 362 (457)
T ss_pred HHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcH
Confidence 233677766643 23333221 2456666666654 344443
No 246
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.76 E-value=3.9e-05 Score=68.74 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=42.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCC---ceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~---~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 235 (475)
..-|+|+|+|||||+++|++|....+. +|+.+++..+. .++++ ...+..|||+|+|.+-
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~-------~a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLE-------QAKGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHH-------HCTTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHH-------HcCCCEEEECChHHCC
Confidence 345899999999999999999998653 45545544322 23344 4468899999999874
Q ss_pred c
Q 011914 236 G 236 (475)
Q Consensus 236 ~ 236 (475)
.
T Consensus 83 ~ 83 (138)
T PF14532_consen 83 P 83 (138)
T ss_dssp H
T ss_pred H
Confidence 4
No 247
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.76 E-value=0.00095 Score=63.28 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
....++|+||.|+|||+|++.+.+.+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 35779999999999999999999987
No 248
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.75 E-value=3.7e-05 Score=83.36 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
....++|.||||+|||++++.++..+
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccC
Confidence 34679999999999999999999764
No 249
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.74 E-value=7.5e-05 Score=78.30 Aligned_cols=75 Identities=11% Similarity=0.137 Sum_probs=51.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCC-----c-eEEEecCc---------------cccCCCCChHHHHH---HHHHHHHHH
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGI-----N-PIMMSAGE---------------LESGNAGEPAKLIR---QRYREAADI 217 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~-----~-~i~vs~s~---------------l~s~~~Ge~e~~Ir---~~f~~A~~~ 217 (475)
.||+||||+|||+|++.|++.... . ++.+.... +.+.+-..++..++ .+...|...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999998643 2 22232221 23444444555555 445556555
Q ss_pred HHhCCceeEEecccccccc
Q 011914 218 IKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 218 ~~~~~p~ILfIDEiDal~~ 236 (475)
...++..+||||||..+..
T Consensus 252 ~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 252 VEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHcCCCEEEEEEChHHHHH
Confidence 5578899999999998754
No 250
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.73 E-value=0.00011 Score=78.75 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=52.4
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCC------CCC--------hHHHHHHHHHHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGE--------PAKLIRQRYREAADI 217 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~------~Ge--------~e~~Ir~~f~~A~~~ 217 (475)
|+.+...++|+|+||+|||+++..+|... +.++++++..+-.... .|. .+..+..++ +.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~----~~ 151 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAIL----AT 151 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHH----HH
Confidence 56667789999999999999999998875 6677888764322110 000 001112222 23
Q ss_pred HHhCCceeEEeccccccccC
Q 011914 218 IKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 218 ~~~~~p~ILfIDEiDal~~~ 237 (475)
++...|.+|+||++..+...
T Consensus 152 i~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 152 IEEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred HHhhCCCEEEEechhhhccc
Confidence 34678999999999988653
No 251
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.73 E-value=9e-05 Score=71.58 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=33.1
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecC
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 193 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s 193 (475)
.|+.....++|+||||+|||++|..+|.+ .+.+.++++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 36667788999999999999999999875 36777888765
No 252
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=0.0001 Score=68.65 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=29.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
-|++.||||+|||++|+.|++.++++++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48899999999999999999999999887764
No 253
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00038 Score=70.89 Aligned_cols=130 Identities=9% Similarity=0.103 Sum_probs=82.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC-------------ceEEEecCccccCCCCChHHHHHHHHHHHHHHH-HhCC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI-------------NPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGK 222 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~-------------~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~-~~~~ 222 (475)
+.+...||+|+.|+||+.+++.+++.+-+ +++.++.. .... ....|+.+.+...-.. ..+.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCC
Confidence 56788999999999999999999999621 12222200 0001 1234444444331000 0246
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCce
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd 302 (475)
..|++||++|.+.. .....|+..++ ++.+.+.+|.+|+.++.|-+.+++ |+.
T Consensus 91 ~KvvII~~~e~m~~-------------~a~NaLLK~LE-------------EPp~~t~~il~~~~~~kll~TI~S--Rc~ 142 (299)
T PRK07132 91 KKILIIKNIEKTSN-------------SLLNALLKTIE-------------EPPKDTYFLLTTKNINKVLPTIVS--RCQ 142 (299)
T ss_pred ceEEEEecccccCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChHhChHHHHh--CeE
Confidence 78999999976521 12245655444 667778888888888999999988 776
Q ss_pred EEEe-cCCHHHHHHHHHh
Q 011914 303 KFYW-APTREDRIGVCSG 319 (475)
Q Consensus 303 ~~i~-~P~~eeR~~Il~~ 319 (475)
.+-+ .|+.++..+.+..
T Consensus 143 ~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EEECCCCCHHHHHHHHHH
Confidence 6555 4667777665543
No 254
>PHA02774 E1; Provisional
Probab=97.68 E-value=0.00039 Score=75.99 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=62.9
Q ss_pred HHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceE-EEecCccccCCCCChHHHHHHHHHHHHHHHHhCCc
Q 011914 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223 (475)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i-~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p 223 (475)
..+|+++ .+++.-..++||||||||||++|.+|++.++-..+ .++...-. | +..+ ..-
T Consensus 422 ~~lk~~l--~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~F--w-----------Lqpl------~d~ 480 (613)
T PHA02774 422 TALKDFL--KGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF--W-----------LQPL------ADA 480 (613)
T ss_pred HHHHHHH--hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcccc--c-----------cchh------ccC
Confidence 3345554 24433468999999999999999999999864333 35432111 1 1111 122
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccc-cCCCCCceEEEecCCC
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN-QEENPRVPIIVTGNDF 288 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~-~~~~~~V~VI~TTN~~ 288 (475)
.|++|||+-.-+ -.-+-..|.++++. ..|.+|-... .......|+|+|||--
T Consensus 481 ki~vlDD~t~~~------------w~y~d~~Lrn~LdG-~~v~lD~Khk~~~q~k~pPlIITSN~d 533 (613)
T PHA02774 481 KIALLDDATHPC------------WDYIDTYLRNALDG-NPVSIDCKHKAPVQIKCPPLLITSNID 533 (613)
T ss_pred CEEEEecCcchH------------HHHHHHHHHHHcCC-CcceeeecccCcccccCCCEEEecCCC
Confidence 489999982110 01233356666662 2444443211 1234668999999943
No 255
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.67 E-value=0.0002 Score=76.57 Aligned_cols=159 Identities=15% Similarity=0.223 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhC---CceEEEecCccccCCCCChHHHHHH-HHHHHH-----------HHHHhCC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQ-RYREAA-----------DIIKKGK 222 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~s~l~s~~~Ge~e~~Ir~-~f~~A~-----------~~~~~~~ 222 (475)
....|||+|++||||-.+|++|-+... -+|+.++|+.+- +.++.. +|...+ ..++...
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip-------~~l~ESELFGhekGAFTGA~~~r~G~fE~A~ 235 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP-------ENLLESELFGHEKGAFTGAITRRIGRFEQAN 235 (464)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC-------HHHHHHHhhcccccCcCCcccccCcceeEcC
Confidence 345699999999999999999988854 599999997653 222221 332111 0111344
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCce
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd 302 (475)
...||||||..+-- .++.-|+..+.+-+.-.+.|. ..-.-+|-||+|||+. |.. ....|||-
T Consensus 236 GGTLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~--~~i~vdvRiIaaT~~d--L~~-~v~~G~FR 297 (464)
T COG2204 236 GGTLFLDEIGEMPL-------------ELQVKLLRVLQEREFERVGGN--KPIKVDVRIIAATNRD--LEE-EVAAGRFR 297 (464)
T ss_pred CceEEeeccccCCH-------------HHHHHHHHHHHcCeeEecCCC--cccceeeEEEeecCcC--HHH-HHHcCCcH
Confidence 67999999986632 222334444443333333332 2234578899999873 322 33446663
Q ss_pred EE---------EecCCHHHHH----HHHHhhcCC---------CCCChHHHHHHHh-cCCCC
Q 011914 303 KF---------YWAPTREDRI----GVCSGIFRT---------DNVPKEDIVKLVD-TFPGQ 341 (475)
Q Consensus 303 ~~---------i~~P~~eeR~----~Il~~~l~~---------~~v~~~~l~~l~~-~~~g~ 341 (475)
.- +.+|...+|. -++++++.. ..++.+.+..|.. .|||.
T Consensus 298 eDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGN 359 (464)
T COG2204 298 EDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGN 359 (464)
T ss_pred HHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChH
Confidence 32 1246666653 233344331 3566667766654 34443
No 256
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.65 E-value=5.3e-05 Score=69.27 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
.+|..|+|+|+||||||++|+.+|+.+|..++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3567899999999999999999999999888743
No 257
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00027 Score=70.37 Aligned_cols=122 Identities=7% Similarity=-0.079 Sum_probs=75.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec--------------CccccCCC-C--ChHHHHHHHHHHHHHHH-
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA--------------GELESGNA-G--EPAKLIRQRYREAADII- 218 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~--------------s~l~s~~~-G--e~e~~Ir~~f~~A~~~~- 218 (475)
.+|..+||+||+|+||..+|.++|+.+-..--.-.+ +++.--+. + -....+|++-+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 568899999999999999999999885221000001 11110000 0 11233444433321000
Q ss_pred HhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccC
Q 011914 219 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~ 298 (475)
+.+...|++|+++|.+-. .....|+..++ ++..++.+|.+|+.++.|.|.+++
T Consensus 85 e~~~~KV~II~~ae~m~~-------------~AaNaLLK~LE-------------EPp~~t~fiLit~~~~~lLpTI~S- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK-------------QSANSLLKLIE-------------EPPKNTYGIFTTRNENNILNTILS- 137 (261)
T ss_pred hcCCCEEEEeccHhhhCH-------------HHHHHHHHhhc-------------CCCCCeEEEEEECChHhCchHhhh-
Confidence 123467999999997632 22345556554 778889999999999999999999
Q ss_pred CCceEEEe
Q 011914 299 GRMEKFYW 306 (475)
Q Consensus 299 GRfd~~i~ 306 (475)
|+..+..
T Consensus 138 -RCq~~~~ 144 (261)
T PRK05818 138 -RCVQYVV 144 (261)
T ss_pred -heeeeec
Confidence 8866544
No 258
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.65 E-value=0.00032 Score=72.06 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=53.6
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccC----CCCChH--------HHHHHHHHHHHHHH
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEPA--------KLIRQRYREAADII 218 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~----~~Ge~e--------~~Ir~~f~~A~~~~ 218 (475)
.|++.-..++|+||||+|||+||..++.+ .|-..++++..+..+. ..|... ....+.+..+..++
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 46777788999999999999998876655 3556666665332110 001000 01122333344455
Q ss_pred HhCCceeEEeccccccccC
Q 011914 219 KKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~~ 237 (475)
+...+.+|+||-+-++.++
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 5788999999999998864
No 259
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.65 E-value=0.00046 Score=72.39 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=51.1
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccC------CCCC--------hHHHHHHHHHHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE--------PAKLIRQRYREAADI 217 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~------~~Ge--------~e~~Ir~~f~~A~~~ 217 (475)
|+.+...++|+|+||+|||+++..+|... +-++++++..+-... ..|. .+..+..+++ .
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~----~ 153 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILA----S 153 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHH----H
Confidence 56666789999999999999999998764 346777775432110 0000 0111222222 3
Q ss_pred HHhCCceeEEeccccccccC
Q 011914 218 IKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 218 ~~~~~p~ILfIDEiDal~~~ 237 (475)
++..+|.+|+||+|..+...
T Consensus 154 i~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 154 IEELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred HHhcCCcEEEEcchHHhhcc
Confidence 33678999999999988643
No 260
>PHA02624 large T antigen; Provisional
Probab=97.63 E-value=0.00036 Score=76.59 Aligned_cols=137 Identities=16% Similarity=0.093 Sum_probs=77.2
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
|++..+.++||||||||||++|.+|++.+|=..+.|+++.-.+ -|.-.- ...-.+.+|||+-.-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks------------~FwL~p----l~D~~~~l~dD~t~~ 490 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL------------NFELGC----AIDQFMVVFEDVKGQ 490 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh------------HHHhhh----hhhceEEEeeecccc
Confidence 5566679999999999999999999999954556676543211 121100 122347888988533
Q ss_pred ccCCCCCcccchhhHHHH--HHHHhhhcCCCcccCCCcc-ccCCCCCceEEEecCCCCCCccccccCCCceEEEec-CCH
Q 011914 235 AGRMGGTTQYTVNNQMVN--ATLMNIADNPTNVQLPGMY-NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTR 310 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~--~~Ll~l~d~~~~v~ldg~~-~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~~-P~~ 310 (475)
.-....-. ..+-+. .-|.+.+|..-.|.+|-.- +.....-.|.|+|||. ..||..+.- ||-+.+.+ |..
T Consensus 491 ~~~~~~Lp----~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~k~ 563 (647)
T PHA02624 491 PADNKDLP----SGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKPKP 563 (647)
T ss_pred ccccccCC----cccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccccH
Confidence 22110000 001111 2344544422234444221 1122344688999997 457887777 88888773 554
Q ss_pred HHHH
Q 011914 311 EDRI 314 (475)
Q Consensus 311 eeR~ 314 (475)
--+.
T Consensus 564 ~l~~ 567 (647)
T PHA02624 564 YLKK 567 (647)
T ss_pred HHHH
Confidence 4443
No 261
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.00055 Score=69.41 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=81.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceE-E-Eec--------------CccccC-CCCC--hHHHHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI-M-MSA--------------GELESG-NAGE--PAKLIRQRYREAADI 217 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i-~-vs~--------------s~l~s~-~~Ge--~e~~Ir~~f~~A~~~ 217 (475)
+.|..+||+|| +||+.+|+.+|+.+-..-- . ..+ +++.-- -.|. ....||++-+.....
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 67899999996 6899999999988532100 0 000 111000 0011 134566555544211
Q ss_pred HHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcccccc
Q 011914 218 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 297 (475)
Q Consensus 218 ~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR 297 (475)
-..+...|++||++|.+... ....|++.++ ++..++.+|.+|+.++.|-|.+++
T Consensus 100 p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLE-------------EPp~~t~~iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN-------------AANSLLKVIE-------------EPQSEIYIFLLTNDENKVLPTIKS 153 (290)
T ss_pred cccCCcEEEEeehhhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhhCchHHHH
Confidence 11345579999999977432 2245555444 667788899999999999999999
Q ss_pred CCCceEEEecCCHHHHHHHHH
Q 011914 298 DGRMEKFYWAPTREDRIGVCS 318 (475)
Q Consensus 298 ~GRfd~~i~~P~~eeR~~Il~ 318 (475)
|+..+.+.|+.++..+++.
T Consensus 154 --Rcq~i~f~~~~~~~~~~L~ 172 (290)
T PRK07276 154 --RTQIFHFPKNEAYLIQLLE 172 (290)
T ss_pred --cceeeeCCCcHHHHHHHHH
Confidence 9877666565555555553
No 262
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.63 E-value=0.00044 Score=74.51 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
..+++||+||+|||||+.++.+|+++|..++..+.
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~N 143 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSN 143 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceeeeecC
Confidence 34789999999999999999999999999888763
No 263
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.63 E-value=4.9e-05 Score=78.38 Aligned_cols=147 Identities=19% Similarity=0.248 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHH-----HHHHHHHHHHHhCCceeEEeccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR-----QRYREAADIIKKGKMCCLFINDL 231 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir-----~~f~~A~~~~~~~~p~ILfIDEi 231 (475)
+....+||.|.||||||.|.+.+++-.... +++++..... .|-+....+ +..-+|-.+. .....|++|||+
T Consensus 55 r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~--~gLta~~~~d~~~~~~~leaGalv-lad~GiccIDe~ 130 (331)
T PF00493_consen 55 RGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSA--AGLTASVSRDPVTGEWVLEAGALV-LADGGICCIDEF 130 (331)
T ss_dssp --S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTC--CCCCEEECCCGGTSSECEEE-HHH-HCTTSEEEECTT
T ss_pred ccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCccc--CCccceeccccccceeEEeCCchh-cccCceeeeccc
Confidence 344689999999999999999887654333 3333321100 010000000 0000111111 334579999999
Q ss_pred cccccCCCCCcccchhhHHHHHHHHhhhcCCC-cccCCCccccCCCCCceEEEecCCCC-------------CCcccccc
Q 011914 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIR 297 (475)
Q Consensus 232 Dal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~-~v~ldg~~~~~~~~~V~VI~TTN~~~-------------~Ld~aLlR 297 (475)
|++-.. ....|.+.++..+ .+.-.|. ...-..+.-|++++|... .++++|++
T Consensus 131 dk~~~~-------------~~~~l~eaMEqq~isi~kagi-~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS 196 (331)
T PF00493_consen 131 DKMKED-------------DRDALHEAMEQQTISIAKAGI-VTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS 196 (331)
T ss_dssp TT--CH-------------HHHHHHHHHHCSCEEECTSSS-EEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC
T ss_pred ccccch-------------HHHHHHHHHHcCeeccchhhh-cccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh
Confidence 986432 1133444444211 1111121 111245677999998665 58899999
Q ss_pred CCCceEEEe---cCCHHHHHHHHHhhcCC
Q 011914 298 DGRMEKFYW---APTREDRIGVCSGIFRT 323 (475)
Q Consensus 298 ~GRfd~~i~---~P~~eeR~~Il~~~l~~ 323 (475)
|||.++. .|+.+.-..|.++++..
T Consensus 197 --RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 197 --RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp --C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred --hcCEEEEeccccccccccccceEEEec
Confidence 9999988 37776666666666654
No 264
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.62 E-value=7.7e-05 Score=66.19 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=26.2
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCcc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l 195 (475)
+++.||||+|||++|+.+++.++. ..++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHH
Confidence 789999999999999999999984 44554433
No 265
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.58 E-value=0.00018 Score=66.29 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=23.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc---eEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~---~i~vs~ 192 (475)
....+..++|+|++|+|||++++.+...+... ++.+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~ 60 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINC 60 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEE
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 34567899999999999999999888775332 555444
No 266
>PRK07261 topology modulation protein; Provisional
Probab=97.57 E-value=0.00019 Score=66.90 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=31.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 201 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~G 201 (475)
-|+|.|+||+|||++|+.++..++.+++.++.-.....+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~ 42 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQE 42 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccccc
Confidence 37899999999999999999999998877665433333433
No 267
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.57 E-value=0.0005 Score=70.74 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccC----CCCCh-HH-------HHHHHHHHHHHHH
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP-AK-------LIRQRYREAADII 218 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~----~~Ge~-e~-------~Ir~~f~~A~~~~ 218 (475)
.|++.-..+.++||||+|||+||-.++.+ .|-..++++...-.+. ..|.. .+ ...+.+..+..++
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 46777788999999999999999987755 4667777766321110 00100 00 0112333344455
Q ss_pred HhCCceeEEeccccccccC
Q 011914 219 KKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~~ 237 (475)
+...+.+|+||-+-++.++
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 5788999999999999864
No 268
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.56 E-value=0.00025 Score=70.44 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=49.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCc------eEEEecCc----------c-----ccCCCCChHHHHH---HHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGE----------L-----ESGNAGEPAKLIR---QRYRE 213 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~------~i~vs~s~----------l-----~s~~~Ge~e~~Ir---~~f~~ 213 (475)
..--++|.||+|+|||++++.+++.+... ++.+.... + .+.+-..+...++ .+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999987542 22322210 1 1222222233232 44445
Q ss_pred HHHHHHhCCceeEEecccccccc
Q 011914 214 AADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 214 A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
|......++..+|||||+..+..
T Consensus 95 a~~~~~~G~~vll~iDei~r~a~ 117 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLAR 117 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhhh
Confidence 54444467899999999998754
No 269
>PRK13695 putative NTPase; Provisional
Probab=97.55 E-value=0.00031 Score=65.27 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el 183 (475)
.++|.|+||+|||++++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988774
No 270
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.54 E-value=0.00017 Score=76.97 Aligned_cols=160 Identities=14% Similarity=0.218 Sum_probs=87.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHH-HHHHH-------HH----HHHHhCC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYRE-------AA----DIIKKGK 222 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir-~~f~~-------A~----~~~~~~~ 222 (475)
....+++.|.+||||+++|+++.... +.+|+.++|..+.. ..+. .+|.. +. ..+....
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~ 228 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-------DLIESELFGHEKGAFTGANTRRQGRFEQAD 228 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-------HHHHHHhcCCCCCCCCCcccCCCCcEEECC
Confidence 34568999999999999999998874 46899999887632 1111 12221 00 0111344
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-------CCcccc
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------TLYAPL 295 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-------~Ld~aL 295 (475)
...|||||||.+-.. +...|++++++......+|. .....++.||+||+..- .+.+.|
T Consensus 229 ~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~f~~~L 293 (463)
T TIGR01818 229 GGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGR--TPIKVDVRIVAATHQNLEALVRQGKFREDL 293 (463)
T ss_pred CCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceeeeeeEEEEeCCCCHHHHHHcCCcHHHH
Confidence 678999999977432 22445554442111112211 11223677888887542 222333
Q ss_pred ccCCCceE-EEecCCHHHHH----HHHHhhcCC---------CCCChHHHHHHHhc-CCCC
Q 011914 296 IRDGRMEK-FYWAPTREDRI----GVCSGIFRT---------DNVPKEDIVKLVDT-FPGQ 341 (475)
Q Consensus 296 lR~GRfd~-~i~~P~~eeR~----~Il~~~l~~---------~~v~~~~l~~l~~~-~~g~ 341 (475)
.. |+.. .|.+|...+|. .++..++.. ..++.+.+..|... |+|.
T Consensus 294 ~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 352 (463)
T TIGR01818 294 FH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGN 352 (463)
T ss_pred HH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCh
Confidence 33 3332 45577655553 344433321 24666666666543 3433
No 271
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.54 E-value=0.00031 Score=68.43 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=54.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccCC------CC-----------------------C
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGN------AG-----------------------E 202 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~~------~G-----------------------e 202 (475)
|++....++++|+||+|||+++..++.+ .|-..++++..+-...+ .| .
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 6777889999999999999999998765 36666666652211000 00 0
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 011914 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 203 ~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 235 (475)
.......++....+.++...|.+|+||++-.+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 011224455555556667789999999999764
No 272
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.53 E-value=0.00014 Score=69.08 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=37.6
Q ss_pred CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCc
Q 011914 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 301 (475)
Q Consensus 222 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRf 301 (475)
..++|+|||+...++.+..... .....+ ..|.. -...+.-||++|.++..||+.+++ +.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~--~~~~~~-~~l~~----------------hRh~g~diiliTQ~~~~id~~ir~--lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGK--KVPEII-EFLAQ----------------HRHYGWDIILITQSPSQIDKFIRD--LV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T------HHH-HGGGG----------------CCCTT-EEEEEES-GGGB-HHHHC--CE
T ss_pred CCcEEEEECChhhcCCCccccc--cchHHH-HHHHH----------------hCcCCcEEEEEeCCHHHHhHHHHH--HH
Confidence 6889999999999987653111 111222 22221 234567899999999999999877 77
Q ss_pred eEEEe
Q 011914 302 EKFYW 306 (475)
Q Consensus 302 d~~i~ 306 (475)
+..+.
T Consensus 138 e~~~~ 142 (193)
T PF05707_consen 138 EYHYH 142 (193)
T ss_dssp EEEEE
T ss_pred heEEE
Confidence 77775
No 273
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.51 E-value=4.2e-05 Score=71.43 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el 183 (475)
.++|+|+||+||||+++.+++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37999999999999999999887
No 274
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.51 E-value=0.0013 Score=69.68 Aligned_cols=154 Identities=13% Similarity=0.186 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHH-HHHHHHH-----------HHHHhCCc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYREAA-----------DIIKKGKM 223 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir-~~f~~A~-----------~~~~~~~p 223 (475)
...++++|.+||||+++|+++.... +.+|+.++|+.+. +..+. .+|.... ..+....+
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-------~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-------ESLLESELFGHEKGAFTGADKRREGRFVEADG 234 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC-------HHHHHHHhcCCCCCCcCCCCcCCCCceeECCC
Confidence 4668999999999999999998764 4689999998653 12221 2232110 01113457
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCce-
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME- 302 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd- 302 (475)
.+|||||||.+... +...|+..+++.....+.+. .....++.+|+||+..- ......|+|.
T Consensus 235 gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~~---~~~~~~~~~~~ 296 (441)
T PRK10365 235 GTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDL---AAEVNAGRFRQ 296 (441)
T ss_pred CEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchH
Confidence 78999999987542 22344444442111111111 11123567888876632 2334455663
Q ss_pred --------EEEecCCHHHHHH----HHHhhcCC---------CCCChHHHHHHHhc
Q 011914 303 --------KFYWAPTREDRIG----VCSGIFRT---------DNVPKEDIVKLVDT 337 (475)
Q Consensus 303 --------~~i~~P~~eeR~~----Il~~~l~~---------~~v~~~~l~~l~~~ 337 (475)
..+.+|...+|.+ +++.++.. ..++.+.+..|...
T Consensus 297 ~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred HHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 2344677766643 33333321 23566666666553
No 275
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.51 E-value=0.00072 Score=65.71 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=31.1
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~ 192 (475)
|+.+...++|.|+||+|||+++..++... |.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 66666789999999999999998877663 778877774
No 276
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.49 E-value=0.00096 Score=64.01 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecC
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s 193 (475)
.|+.....++|+|+||+|||++|..+|.+. |-++++++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 367777889999999999999999998774 5577777653
No 277
>PRK13947 shikimate kinase; Provisional
Probab=97.47 E-value=0.00041 Score=63.82 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=31.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCCh
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~ 203 (475)
.|+|.|+||||||++++.+|+.+|++|+..+ .+.....|.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~~ 43 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGMT 43 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCCc
Confidence 4899999999999999999999999986544 3333334443
No 278
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.46 E-value=0.0012 Score=64.76 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=53.3
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCcccc---------C-----------------------
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES---------G----------------------- 198 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s---------~----------------------- 198 (475)
.|+.+...+|++||||+|||++|..++.+ .|-+.++++..+-.. +
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~ 95 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIG 95 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccccc
Confidence 36777788999999999999999876554 366666665432110 0
Q ss_pred -------CCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 199 -------NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 199 -------~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
|+-.....+..++...++.++..++.+|+||-+..+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~ 140 (237)
T TIGR03877 96 EAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYI 140 (237)
T ss_pred cccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhc
Confidence 00011123444555555555567788999999988743
No 279
>PRK06762 hypothetical protein; Provisional
Probab=97.44 E-value=0.00019 Score=65.79 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
|..++|.|+||+|||++|+.+++.++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 67899999999999999999999997666666664443
No 280
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.43 E-value=0.0008 Score=65.12 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=52.3
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCccccC-----------C-CC-----------
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG-----------N-AG----------- 201 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s~-----------~-~G----------- 201 (475)
.|++....+.|+||||||||++|..++... +...++++...-... + ..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence 367777889999999999999999987552 256667765431110 0 00
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CceeEEecccccccc
Q 011914 202 EPAKLIRQRYREAADIIKKG-KMCCLFINDLDAGAG 236 (475)
Q Consensus 202 e~e~~Ir~~f~~A~~~~~~~-~p~ILfIDEiDal~~ 236 (475)
.+...+...+....+.++.. .+.+|+||-+.+++.
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 00111223334344444456 899999999998764
No 281
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.42 E-value=0.00029 Score=65.60 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=28.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
+.|+|.|+||+|||++|+.+++.++..++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 579999999999999999999998876665443
No 282
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.42 E-value=0.00016 Score=70.52 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=42.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCc-cccC---------CCCChHHHHHHHHHHHHHHHHhCCceeE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESG---------NAGEPAKLIRQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~-l~s~---------~~Ge~e~~Ir~~f~~A~~~~~~~~p~IL 226 (475)
+.|..+||||+||+|||++|+.++.. ..++..+.+. ...+ ....+...+.+.+.... .....+..|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~--~~~~~ydtV 85 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQN--IQAVKYDNI 85 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHH--hccccCCEE
Confidence 34677999999999999999998732 2222222211 0010 01112222333333221 013557899
Q ss_pred Eecccccccc
Q 011914 227 FINDLDAGAG 236 (475)
Q Consensus 227 fIDEiDal~~ 236 (475)
+||.++.+..
T Consensus 86 VIDsI~~l~~ 95 (220)
T TIGR01618 86 VIDNISALQN 95 (220)
T ss_pred EEecHHHHHH
Confidence 9999998754
No 283
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.38 E-value=0.0011 Score=63.39 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..++|.||.|+|||++.+.|+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999999854
No 284
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.37 E-value=0.0015 Score=60.58 Aligned_cols=111 Identities=14% Similarity=0.233 Sum_probs=67.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHH---hCCceEE---EecCc-------------cc-----c--CCC-CCh---HHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAK---MGINPIM---MSAGE-------------LE-----S--GNA-GEP---AKLIRQR 210 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~e---lg~~~i~---vs~s~-------------l~-----s--~~~-Ge~---e~~Ir~~ 210 (475)
.+.+|+++|.|||++|-.+|-. .|..+.. +.... +. . .+. .+. ....++.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 4778999999999999988776 3555444 33210 00 0 000 111 2345667
Q ss_pred HHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCC
Q 011914 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290 (475)
Q Consensus 211 f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~ 290 (475)
|+.|++.++.....+|+||||-......- .....+.. +++ ....+.=||+|++.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gl------i~~~~v~~----ll~-------------~rp~~~evIlTGr~--- 137 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGL------LDVEEVVD----LLK-------------AKPEDLELVLTGRN--- 137 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCC------CCHHHHHH----HHH-------------cCCCCCEEEEECCC---
Confidence 88888888888899999999987654311 11123333 333 33456679999977
Q ss_pred Ccccccc
Q 011914 291 LYAPLIR 297 (475)
Q Consensus 291 Ld~aLlR 297 (475)
.++.|+.
T Consensus 138 ~p~~l~e 144 (159)
T cd00561 138 APKELIE 144 (159)
T ss_pred CCHHHHH
Confidence 3455554
No 285
>PRK03839 putative kinase; Provisional
Probab=97.37 E-value=0.00016 Score=67.48 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=27.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3789999999999999999999999886543
No 286
>PRK04296 thymidine kinase; Provisional
Probab=97.37 E-value=0.0015 Score=62.01 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=42.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec--Cc------cccCCCCCh-----HHHHHHHHHHHHHHHHhCCc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA--GE------LESGNAGEP-----AKLIRQRYREAADIIKKGKM 223 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~--s~------l~s~~~Ge~-----e~~Ir~~f~~A~~~~~~~~p 223 (475)
...+++||||+|||+++..++..+ |..++.+.. .. +.+ ..|.. ......+++.+.+ ....+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~-~lg~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVS-RIGLSREAIPVSSDTDIFELIEE--EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEec-CCCCcccceEeCChHHHHHHHHh--hCCCC
Confidence 468899999999999988877764 556555533 11 111 11211 0122334444332 24678
Q ss_pred eeEEeccccc
Q 011914 224 CCLFINDLDA 233 (475)
Q Consensus 224 ~ILfIDEiDa 233 (475)
.+|+|||+.-
T Consensus 80 dvviIDEaq~ 89 (190)
T PRK04296 80 DCVLIDEAQF 89 (190)
T ss_pred CEEEEEcccc
Confidence 8999999953
No 287
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.36 E-value=0.0014 Score=63.01 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---C------CceEEEecC
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---G------INPIMMSAG 193 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g------~~~i~vs~s 193 (475)
.|++.-..+.|+||||+|||++|..+|... + ..+++++..
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 467777889999999999999999988763 2 556666654
No 288
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.36 E-value=0.0018 Score=64.54 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=52.6
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCcccc----------CCCCC-----------------h-
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES----------GNAGE-----------------P- 203 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s----------~~~Ge-----------------~- 203 (475)
|+.+...++++||||||||++|..++.+ .|-+.++++..+-.. ...|. .
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~ 111 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTE 111 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchh
Confidence 6677788999999999999999987664 356666666432110 00010 0
Q ss_pred -HHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 011914 204 -AKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 204 -e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 235 (475)
...+..++......+++..+.+|+||-+-++.
T Consensus 112 ~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 144 (259)
T TIGR03878 112 LRENVPNLLATLAYAIKEYKVKNTVIDSITGLY 144 (259)
T ss_pred hhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhc
Confidence 02234455555555667789999999997664
No 289
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.36 E-value=0.00058 Score=65.97 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=50.1
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHH---h-CCceEEEecCccccC------CCCC-----------------h---
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---M-GINPIMMSAGELESG------NAGE-----------------P--- 203 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~e---l-g~~~i~vs~s~l~s~------~~Ge-----------------~--- 203 (475)
.|++....+|+.||||+|||+++..++.+ . |-+.++++..+-... -.|- +
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 46777889999999999999999877654 2 778777775221100 0000 0
Q ss_pred ---HHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 204 ---AKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 204 ---e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
...+..++..-.+.++..++.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0112233333333444677899999999988
No 290
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.35 E-value=0.00079 Score=60.59 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=25.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
++|+|+||+|||++|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876553
No 291
>PRK09354 recA recombinase A; Provisional
Probab=97.33 E-value=0.0015 Score=67.79 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=54.0
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 218 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~----~~Ge~--------e~~Ir~~f~~A~~~~ 218 (475)
.|++.-..++|+||||||||+||-.++.+ .|-..++++...-.+. -.|.. .....+.+..+..++
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 46777788999999999999999877654 4666677665431110 00000 001222334444455
Q ss_pred HhCCceeEEeccccccccC
Q 011914 219 KKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~~ 237 (475)
+...+.+|+||-+-++.++
T Consensus 135 ~s~~~~lIVIDSvaaL~~~ 153 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVPK 153 (349)
T ss_pred hcCCCCEEEEeChhhhcch
Confidence 6788999999999998863
No 292
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.33 E-value=0.0011 Score=64.77 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~ 192 (475)
+++....++|.||||||||++|..++.. -|...++++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4555678999999999999998655443 2566666664
No 293
>PLN02200 adenylate kinase family protein
Probab=97.33 E-value=0.00025 Score=69.66 Aligned_cols=40 Identities=40% Similarity=0.705 Sum_probs=33.4
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
+.+.|..++|.||||+|||++|+.+|+++|+. .++.+++.
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 45677899999999999999999999999864 56666554
No 294
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.31 E-value=0.00016 Score=77.23 Aligned_cols=167 Identities=18% Similarity=0.278 Sum_probs=94.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccc-----cCCCCChHHHHHHHHHHHH----HHHHhCCce
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-----SGNAGEPAKLIRQRYREAA----DIIKKGKMC 224 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~-----s~~~Ge~e~~Ir~~f~~A~----~~~~~~~p~ 224 (475)
+....|||.|..||||-.+|++|-... .-+|+.++|+.+- |..+|- .+..|.-|. ...+-....
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGH----eKGAFTGA~~~r~GrFElAdGG 319 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGH----EKGAFTGAINTRRGRFELADGG 319 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcc----cccccccchhccCcceeecCCC
Confidence 445789999999999999999998875 4599999996542 222222 112222221 000122356
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceE-
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 303 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~- 303 (475)
-||+|||..+--. +..-|+..+.+-+.-.+.|. ..-.-.|-||++||+ .|.. ..+.|+|-.
T Consensus 320 TLFLDEIGelPL~-------------lQaKLLRvLQegEieRvG~~--r~ikVDVRiIAATNR--DL~~-~V~~G~FRaD 381 (550)
T COG3604 320 TLFLDEIGELPLA-------------LQAKLLRVLQEGEIERVGGD--RTIKVDVRVIAATNR--DLEE-MVRDGEFRAD 381 (550)
T ss_pred eEechhhccCCHH-------------HHHHHHHHHhhcceeecCCC--ceeEEEEEEEeccch--hHHH-HHHcCcchhh
Confidence 8999999866332 22344444443333333332 122346889999998 3333 345677733
Q ss_pred -EEe-------cCCHHHHH---HHHHhh-cC---------CCCCChHHHHHHHh-cCCCCchhh
Q 011914 304 -FYW-------APTREDRI---GVCSGI-FR---------TDNVPKEDIVKLVD-TFPGQSIDF 345 (475)
Q Consensus 304 -~i~-------~P~~eeR~---~Il~~~-l~---------~~~v~~~~l~~l~~-~~~g~~i~f 345 (475)
.|. +|...+|. -+|-.+ ++ ...++.+.+..+.+ .|+|..-+.
T Consensus 382 LYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVREL 445 (550)
T COG3604 382 LYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVREL 445 (550)
T ss_pred hhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHH
Confidence 222 36555552 222222 22 23567777877776 566665443
No 295
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.31 E-value=0.00023 Score=71.48 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC--CceEEEecCccccCCCCChHHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 215 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg--~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~ 215 (475)
.+.+||.||||||||.||-+|+.++| .+|.-+.++++.+.-+..++-+ -+-|++|.
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-menfRRaI 121 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-MENFRRAI 121 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-HHHHHHHh
Confidence 47899999999999999999999986 5888899999888766666544 35566664
No 296
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.30 E-value=0.00024 Score=63.82 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
|+|+|+||+|||++|+.+|+.+|++++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999877544
No 297
>PRK08233 hypothetical protein; Provisional
Probab=97.29 E-value=0.001 Score=61.45 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC-CceEEE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG-INPIMM 190 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg-~~~i~v 190 (475)
+..|.|.|+||+|||++|+.|+..++ ..++.+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 46789999999999999999999986 344444
No 298
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.27 E-value=0.0012 Score=73.01 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=50.4
Q ss_pred ccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCC----ceEEEecCccc
Q 011914 128 TLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELE 196 (475)
Q Consensus 128 ~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~----~~i~vs~s~l~ 196 (475)
+..+..+|+.|+-.-+..++..+.... .+.+..|+|+|+||+|||++|++++..++. +++.++...+.
T Consensus 362 l~~G~~pP~~f~rpeV~~iL~~~~~~r-~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 362 LREGLEIPEWFSFPEVVAELRRTYPPR-HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred HHCCCCCChhhcHHHHHHHHHHHhccc-cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 444667788888777777776664432 466778999999999999999999999875 45556655443
No 299
>PRK00625 shikimate kinase; Provisional
Probab=97.27 E-value=0.00024 Score=66.62 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=28.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4889999999999999999999999988765
No 300
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.27 E-value=0.001 Score=65.93 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=30.2
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~ 192 (475)
|+.+-..++|.||||+|||+++..++... |.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 55666789999999999999998877663 667777765
No 301
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.27 E-value=0.00059 Score=65.08 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.++|.||+|+|||+++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999988864
No 302
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.27 E-value=0.00075 Score=61.68 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.5
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
++|.||||+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4688999999999999999999876553
No 303
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.26 E-value=0.00027 Score=78.61 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=51.3
Q ss_pred CCCCChhhHHHHHHHH-HHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc----eEEEecCcc------ccCC
Q 011914 131 GLYIAPAFMDKVVVHI-TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----PIMMSAGEL------ESGN 199 (475)
Q Consensus 131 ~~~i~~~~~d~~~~~i-~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~----~i~vs~s~l------~s~~ 199 (475)
+..+|+.+.++++.|. ++..+.. .+..+.+++|+||||||||++|+++++.++.. ++++.-+.+ ..-+
T Consensus 9 ~~~~~~~~~~~viG~~~a~~~l~~-a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~ 87 (608)
T TIGR00764 9 EIPVPERLIDQVIGQEEAVEIIKK-AAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVP 87 (608)
T ss_pred ccCcchhhHhhccCHHHHHHHHHH-HHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHH
Confidence 4456666666653221 1111110 01123488899999999999999999998654 223333322 2234
Q ss_pred CCChHHHHHHHHHHHH
Q 011914 200 AGEPAKLIRQRYREAA 215 (475)
Q Consensus 200 ~Ge~e~~Ir~~f~~A~ 215 (475)
.|..++.++..|..|+
T Consensus 88 ~~~g~~~~~~~~~~~~ 103 (608)
T TIGR00764 88 AGEGREIVEDYKKKAF 103 (608)
T ss_pred HhhchHHHHHHHHHhh
Confidence 5667788888888776
No 304
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.25 E-value=0.00025 Score=65.92 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=27.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
|+|.||||+|||++|+.+|+++|+ ..++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 789999999999999999999986 456655443
No 305
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00024 Score=64.98 Aligned_cols=32 Identities=31% Similarity=0.319 Sum_probs=29.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
..||++|-||||||++|+.||..+|+.++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 35899999999999999999999999988765
No 306
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.22 E-value=0.0034 Score=67.56 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=50.7
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccC------CCCChHHHHH----HHHHHHHHHHHhC
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGEPAKLIR----QRYREAADIIKKG 221 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~------~~Ge~e~~Ir----~~f~~A~~~~~~~ 221 (475)
|+.+...++|+|+||+|||+++..++... +-++++++..+-... -.|-....+. .-+....+.++..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 66667889999999999999999987764 346777776432210 0010000000 0011222233467
Q ss_pred CceeEEecccccccc
Q 011914 222 KMCCLFINDLDAGAG 236 (475)
Q Consensus 222 ~p~ILfIDEiDal~~ 236 (475)
+|.+|+||.|-.+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998754
No 307
>PRK14531 adenylate kinase; Provisional
Probab=97.22 E-value=0.00034 Score=65.69 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=28.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l 195 (475)
..|+|.||||+|||++++.+|+.+|+..+ +.+++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~ 36 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDL 36 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccH
Confidence 35899999999999999999999987654 44443
No 308
>PRK14532 adenylate kinase; Provisional
Probab=97.20 E-value=0.0003 Score=65.98 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
.|+|.||||+|||++|+.+|+..|+.+ ++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHH
Confidence 378999999999999999999998655 5554443
No 309
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.20 E-value=0.0028 Score=59.62 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
+++...+.|.||.|+|||+|.+++....|
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G 46 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASG 46 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCC
Confidence 34556799999999999999999975433
No 310
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.19 E-value=0.00032 Score=62.35 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=27.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
.|.|.|+||+|||++|+.+|+.+|++++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 3789999999999999999999999987665
No 311
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.17 E-value=0.0011 Score=60.41 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=28.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 195 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l 195 (475)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 666666665433
No 312
>PRK06696 uridine kinase; Validated
Probab=97.16 E-value=0.0011 Score=64.38 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=34.1
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 196 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~ 196 (475)
...|..|+|.|++|+|||++|+.|+..+ |.+++.++...+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3568999999999999999999999998 6777776655443
No 313
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.14 E-value=0.0023 Score=59.89 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~ 194 (475)
.+++.||||+|||++|..++.+.+.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777776554
No 314
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.14 E-value=0.00039 Score=65.02 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=26.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCcc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l 195 (475)
|+|.||||+|||++|+.||+.+|+.+ ++.+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHH
Confidence 78999999999999999999988765 444443
No 315
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.13 E-value=0.0044 Score=59.97 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~ 181 (475)
++.++|+||.|+|||++.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 58899999999999999999983
No 316
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.13 E-value=0.0018 Score=68.60 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEecc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 230 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~-~~~p~ILfIDE 230 (475)
+.....+++.||+|||||+++.+++.+. | -.++. ..++..+-. ..+. -....+|+|||
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~-----------a~Lf~~L~~---~~lg~v~~~DlLI~DE 268 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITV-----------AKLFYNIST---RQIGLVGRWDVVAFDE 268 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcH-----------HHHHHHHHH---HHHhhhccCCEEEEEc
Confidence 3455779999999999999999988772 3 11111 222222221 1222 56688999999
Q ss_pred ccccc
Q 011914 231 LDAGA 235 (475)
Q Consensus 231 iDal~ 235 (475)
+..+.
T Consensus 269 vgylp 273 (449)
T TIGR02688 269 VATLK 273 (449)
T ss_pred CCCCc
Confidence 98753
No 317
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.13 E-value=0.0035 Score=60.48 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=50.2
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccC---------C-----CC--------Ch---HHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG---------N-----AG--------EP---AKL 206 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~---------~-----~G--------e~---e~~ 206 (475)
|+++...++|.|+||+|||.+|..++.+ .|-+.++++..+-... | .+ .+ ...
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 5666788999999999999999888765 3666666665321100 0 00 00 011
Q ss_pred HHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 207 IRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 207 Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+..+....+.+++...+..++||-+..+
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l 119 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLL 119 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHH
Confidence 2333334444555677889999988876
No 318
>PRK06547 hypothetical protein; Provisional
Probab=97.13 E-value=0.00051 Score=64.37 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
..|..|++.|++|+|||++|+.+++.++..++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 5678899999999999999999999998776644
No 319
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.12 E-value=0.0005 Score=67.38 Aligned_cols=38 Identities=26% Similarity=0.458 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
..|.-|+|.||||+|||++|+.+|+.+|+++ ++.+++.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~--is~gdll 41 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKH--INMGNIL 41 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcE--EECChHH
Confidence 3455589999999999999999999998765 4444443
No 320
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.11 E-value=0.0015 Score=68.98 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=47.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCc------eEEEecC--------------ccccCCCCChHHH-H---HHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG--------------ELESGNAGEPAKL-I---RQRYREAA 215 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~------~i~vs~s--------------~l~s~~~Ge~e~~-I---r~~f~~A~ 215 (475)
.-++|.||||+|||++++.|++....+ ++.+... .+.....+++... + ..+...|.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 348999999999999999999985433 2222211 1111123333222 2 23444455
Q ss_pred HHHHhCCceeEEecccccccc
Q 011914 216 DIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 216 ~~~~~~~p~ILfIDEiDal~~ 236 (475)
.....++..||||||+..+..
T Consensus 249 ~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHcCCCeEEEEEChhHHHH
Confidence 444578889999999998754
No 321
>PRK14527 adenylate kinase; Provisional
Probab=97.10 E-value=0.00044 Score=65.24 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
+.|..+++.||||+|||++|+.+|++++...+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 45788999999999999999999999987543
No 322
>PRK13949 shikimate kinase; Provisional
Probab=97.10 E-value=0.00046 Score=64.33 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=28.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
.|+|.||||+|||++++.+|+.++++++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999887655
No 323
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.08 E-value=0.0015 Score=65.70 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh-CCceEEEecCcc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGEL 195 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el-g~~~i~vs~s~l 195 (475)
+..++|.|+||+|||++|+.+++.+ +. ..++...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~--~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKA--VNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCC--EEEeccHH
Confidence 4678999999999999999999998 54 44554443
No 324
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00048 Score=64.99 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=26.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
-|+|.||||+||||+|+.|++.++ +.+++.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHh
Confidence 378889999999999999999954 4566655443
No 325
>PRK06217 hypothetical protein; Validated
Probab=97.07 E-value=0.00052 Score=64.40 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
.|+|.|+||+|||++|+.+++.+|++++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876544
No 326
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0023 Score=73.23 Aligned_cols=137 Identities=18% Similarity=0.129 Sum_probs=92.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc--cCCCCChHHHHHHHHHHHHHHHHhCCceeEE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~--s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILf 227 (475)
+.=+|.|.||+|||.+++-+++.. +..++.++.+.+. .++.|+.+..++.+.+++.. .....|||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~---~~~gvILf 285 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES---GGGGVILF 285 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhc---CCCcEEEE
Confidence 455788999999999999999983 3466677776544 35678888888888887641 44677999
Q ss_pred eccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEec-CC----CCCCccccccCCCce
Q 011914 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG-ND----FSTLYAPLIRDGRME 302 (475)
Q Consensus 228 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT-N~----~~~Ld~aLlR~GRfd 302 (475)
|||++-+.+.... . . .-.....|.-++. ...+-+|+|| |. -..=||+|-| ||+
T Consensus 286 igelh~lvg~g~~--~-~--~~d~~nlLkp~L~---------------rg~l~~IGatT~e~Y~k~iekdPalEr--rw~ 343 (898)
T KOG1051|consen 286 LGELHWLVGSGSN--Y-G--AIDAANLLKPLLA---------------RGGLWCIGATTLETYRKCIEKDPALER--RWQ 343 (898)
T ss_pred ecceeeeecCCCc--c-h--HHHHHHhhHHHHh---------------cCCeEEEecccHHHHHHHHhhCcchhh--Ccc
Confidence 9999998775332 1 1 1112222222222 2337788855 33 2345899999 999
Q ss_pred EEEe-cCCHHHHHHHHHhhc
Q 011914 303 KFYW-APTREDRIGVCSGIF 321 (475)
Q Consensus 303 ~~i~-~P~~eeR~~Il~~~l 321 (475)
.... .|+.++-..||+...
T Consensus 344 l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 344 LVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred eeEeccCcccchhhhhhhhh
Confidence 9988 798887766766433
No 327
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.07 E-value=0.001 Score=66.88 Aligned_cols=26 Identities=15% Similarity=-0.086 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
...++|.||||+|||++.++++..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 36899999999999999999999864
No 328
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.06 E-value=0.0012 Score=65.06 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=27.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 195 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l 195 (475)
|+|.|+||+|||++|+.+++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 466666665444
No 329
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.05 E-value=0.00063 Score=63.18 Aligned_cols=29 Identities=41% Similarity=0.690 Sum_probs=25.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
..++|.||||+|||++|+.+++++|...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 36888999999999999999999986543
No 330
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.04 E-value=0.0041 Score=59.36 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=69.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH---hCCceEEEec---C----cc--cc--------------CCCC----ChHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA---G----EL--ES--------------GNAG----EPAKLIRQ 209 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~---s----~l--~s--------------~~~G----e~e~~Ir~ 209 (475)
..+.+||++|.|||++|-.+|-. .|..+..+.. . +. .. .|.. +.....++
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 45889999999999999988776 3444333321 0 00 00 0111 12356677
Q ss_pred HHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC
Q 011914 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 289 (475)
Q Consensus 210 ~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~ 289 (475)
.|+.|++.+......+|+||||-...... -+....|..+| + .....+=||+|.+.+
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~g------li~~eevi~~L----~-------------~rp~~~evVlTGR~~- 158 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYG------YLDVEEVLEAL----N-------------ARPGMQHVVITGRGA- 158 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCC------CccHHHHHHHH----H-------------cCCCCCEEEEECCCC-
Confidence 89999988888899999999997665431 11122333333 2 334566799999763
Q ss_pred CCcccccc
Q 011914 290 TLYAPLIR 297 (475)
Q Consensus 290 ~Ld~aLlR 297 (475)
++.|+-
T Consensus 159 --p~~Lie 164 (191)
T PRK05986 159 --PRELIE 164 (191)
T ss_pred --CHHHHH
Confidence 455554
No 331
>PRK14530 adenylate kinase; Provisional
Probab=97.03 E-value=0.00062 Score=65.53 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
.|+|.||||+|||++|+.||+.+|++++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 47889999999999999999999876553
No 332
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.03 E-value=0.0028 Score=64.49 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=32.2
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGE 194 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~ 194 (475)
.|+.....++|+||||+|||++|-.+|... +-..++++..+
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 367777889999999999999999888763 22677777644
No 333
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.03 E-value=0.002 Score=73.22 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=52.8
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 218 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~----~~Ge~--------e~~Ir~~f~~A~~~~ 218 (475)
.|+..-..++|+||||||||+||..++.. .|-..++++..+-... -.|.. .......+..+..++
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 36777788999999999999999655443 4556666665432210 00000 000112333444455
Q ss_pred HhCCceeEEeccccccccC
Q 011914 219 KKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~~ 237 (475)
+...+.+|+||-+.+++.+
T Consensus 135 ~~~~~~LVVIDSI~aL~~r 153 (790)
T PRK09519 135 RSGALDIVVIDSVAALVPR 153 (790)
T ss_pred hcCCCeEEEEcchhhhcch
Confidence 5778999999999999863
No 334
>PRK04040 adenylate kinase; Provisional
Probab=97.03 E-value=0.0007 Score=64.28 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh--CCce
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM--GINP 187 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el--g~~~ 187 (475)
|+.++++|+||||||++++.+++++ +..+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 6789999999999999999999999 5544
No 335
>PRK13948 shikimate kinase; Provisional
Probab=97.03 E-value=0.00074 Score=63.91 Aligned_cols=35 Identities=17% Similarity=0.005 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
++|..|+|.|++|+|||++++.+|+.+|.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 56788999999999999999999999999998555
No 336
>PF14516 AAA_35: AAA-like domain
Probab=97.02 E-value=0.049 Score=56.20 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=59.8
Q ss_pred CCCCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHH
Q 011914 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLI 207 (475)
Q Consensus 131 ~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~I 207 (475)
.+||...-.|+.+...++ ++..-+.|+||..+|||++...+.+.+ |...+.++...+.+......++.+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~--------~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIV--------QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CcccCchHHHHHHHHHHh--------cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 456655534444443332 234678999999999999998887664 778888887765443222222211
Q ss_pred H-------------------------------HHHHHHHHHHH-hCCceeEEeccccccccC
Q 011914 208 R-------------------------------QRYREAADIIK-KGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 208 r-------------------------------~~f~~A~~~~~-~~~p~ILfIDEiDal~~~ 237 (475)
+ ..|++. +++ ..+|-||+|||+|.++..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~--ll~~~~~~lVL~iDEiD~l~~~ 142 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEY--LLKQIDKPLVLFIDEIDRLFEY 142 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHH--HHhcCCCCEEEEEechhhhccC
Confidence 1 111111 122 467999999999999763
No 337
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.02 E-value=0.0048 Score=63.15 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=51.1
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCccccC--------CCCC-hHH-----------
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGE-PAK----------- 205 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s~--------~~Ge-~e~----------- 205 (475)
|+.....++|+||||+|||.+|..+|... +-..++++..+-+.. -.|. .++
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 57777889999999999999999988663 236677776431110 0010 011
Q ss_pred ---HHHHHHHHHHHHHHh-CCceeEEeccccccccC
Q 011914 206 ---LIRQRYREAADIIKK-GKMCCLFINDLDAGAGR 237 (475)
Q Consensus 206 ---~Ir~~f~~A~~~~~~-~~p~ILfIDEiDal~~~ 237 (475)
....+......++.. ..+.+|+||-|-+++..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRA 213 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhh
Confidence 111222333334444 67889999999987643
No 338
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.02 E-value=0.001 Score=69.43 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
..+|+||.|||..|||||+|.-..+..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3569999999999999999999988653
No 339
>PRK04328 hypothetical protein; Provisional
Probab=97.02 E-value=0.0026 Score=62.91 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=28.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~ 192 (475)
|+++...+|++||||+|||.+|..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 5666788999999999999998876554 3445555543
No 340
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.02 E-value=0.0037 Score=58.44 Aligned_cols=73 Identities=22% Similarity=0.195 Sum_probs=46.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHH-------------HHHHHHHHHh-CCceeEE
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR-------------YREAADIIKK-GKMCCLF 227 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~-------------f~~A~~~~~~-~~p~ILf 227 (475)
+|+.|++|+|||++|..++...+.+.+++....-.+ .+..+.|... .....+.++. ..+.+|+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d---~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VL 78 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFD---DEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVL 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCC---HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEE
Confidence 689999999999999999998887888876553321 1222222221 0011112222 2577899
Q ss_pred eccccccccC
Q 011914 228 INDLDAGAGR 237 (475)
Q Consensus 228 IDEiDal~~~ 237 (475)
||-+..+...
T Consensus 79 IDclt~~~~n 88 (169)
T cd00544 79 IDCLTLWVTN 88 (169)
T ss_pred EEcHhHHHHH
Confidence 9998877554
No 341
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.01 E-value=0.0019 Score=67.55 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=46.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC-----ceEEEec---------------CccccCCCCCh-HHHHH---HHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSA---------------GELESGNAGEP-AKLIR---QRYREAAD 216 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~-----~~i~vs~---------------s~l~s~~~Ge~-e~~Ir---~~f~~A~~ 216 (475)
-.||.||||||||+|++.+++.+.. .++.+-. ..+......++ ...++ .+...|..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999998633 2233211 11111111122 22222 33445555
Q ss_pred HHHhCCceeEEecccccccc
Q 011914 217 IIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 217 ~~~~~~p~ILfIDEiDal~~ 236 (475)
..+.++..+|++||+..++.
T Consensus 215 f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 215 LVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHcCCCEEEEEeCcHHHHH
Confidence 55588899999999997754
No 342
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.00 E-value=0.011 Score=65.57 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=74.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCC--ceEEEecCccccCCCCChHHHHHHHHHHHH-----HHHHhCCceeEEecccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREAA-----DIIKKGKMCCLFINDLD 232 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~--~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----~~~~~~~p~ILfIDEiD 232 (475)
.|++|-|++|||||+++++++.-+.. +|..+..+.-....+|.- -|......-. .++......|||+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 58999999999999999999998754 777665544333344431 1111111100 00112224699999998
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccC--CCccccCCCCCceEEEecCCC---CCCccccccCCCceEEEec
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL--PGMYNQEENPRVPIIVTGNDF---STLYAPLIRDGRMEKFYWA 307 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~l--dg~~~~~~~~~V~VI~TTN~~---~~Ld~aLlR~GRfd~~i~~ 307 (475)
.+-. .+...|++-++ ...|.+ +|... ....+..+|+|-|.. ..|+++++. ||+..+.+
T Consensus 104 ~~~~-------------~~~~aLleame-~G~vtIeR~G~s~-~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 104 RLEP-------------GTAARLAAALD-TGEVRLERDGLAL-RLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cCCH-------------HHHHHHHHHHh-CCcEEEEECCcEE-ecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 5532 33455555444 223333 44411 222445566653322 448999999 99999994
No 343
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0016 Score=63.75 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=45.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh--------CCceEEEec-CccccCCCCChHHHHHHHHH------HH---HHHHHh
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM--------GINPIMMSA-GELESGNAGEPAKLIRQRYR------EA---ADIIKK 220 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el--------g~~~i~vs~-s~l~s~~~Ge~e~~Ir~~f~------~A---~~~~~~ 220 (475)
-...||.||||||||++.+-||.-+ +..+..++- +++.....|-+.--+-...+ ++ ..+++.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 3568899999999999999888874 233444443 33443333433221111111 11 123458
Q ss_pred CCceeEEecccc
Q 011914 221 GKMCCLFINDLD 232 (475)
Q Consensus 221 ~~p~ILfIDEiD 232 (475)
+.|.|+++|||.
T Consensus 217 m~PEViIvDEIG 228 (308)
T COG3854 217 MSPEVIIVDEIG 228 (308)
T ss_pred cCCcEEEEeccc
Confidence 999999999996
No 344
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=96.99 E-value=0.001 Score=73.29 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=69.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHH-----HHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL-----IRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~-----Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
--.|||+|-||||||-+.+.+++-+..-. +.|+- .+.-+|.+.-. -+++.-+.-.+. .....|-.|||+|+
T Consensus 462 ~INILL~GDPGtsKSqlLqyv~~l~pRg~-yTSGk--GsSavGLTayVtrd~dtkqlVLesGALV-LSD~GiCCIDEFDK 537 (804)
T KOG0478|consen 462 DINILLVGDPGTSKSQLLQYCHRLLPRGV-YTSGK--GSSAVGLTAYVTKDPDTRQLVLESGALV-LSDNGICCIDEFDK 537 (804)
T ss_pred cceEEEecCCCcCHHHHHHHHHHhCCcce-eecCC--ccchhcceeeEEecCccceeeeecCcEE-EcCCceEEchhhhh
Confidence 35799999999999999999998754332 22221 01111211100 001111110000 22344667999998
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-------------CCccccccCCC
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 300 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-------------~Ld~aLlR~GR 300 (475)
+-.. ++ .+-.+.+.+.-+.+.+ -|. ...-+.+.-||++.|... .|+|.|++ |
T Consensus 538 M~dS----tr-SvLhEvMEQQTvSIAK-------AGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--R 602 (804)
T KOG0478|consen 538 MSDS----TR-SVLHEVMEQQTLSIAK-------AGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--R 602 (804)
T ss_pred hhHH----HH-HHHHHHHHHhhhhHhh-------cce-eeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--h
Confidence 7322 11 1111111111112221 122 113346677899998432 47999999 9
Q ss_pred ceEEEec---CCHH
Q 011914 301 MEKFYWA---PTRE 311 (475)
Q Consensus 301 fd~~i~~---P~~e 311 (475)
||.+|.+ |+..
T Consensus 603 FDLIylllD~~DE~ 616 (804)
T KOG0478|consen 603 FDLIFLLLDKPDER 616 (804)
T ss_pred hcEEEEEecCcchh
Confidence 9999883 5544
No 345
>PRK05973 replicative DNA helicase; Provisional
Probab=96.97 E-value=0.0073 Score=59.57 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=30.1
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
|+.+-..++|.|+||+|||+++-.++.+. |.+.++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 66666789999999999999988776653 666666664
No 346
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.96 E-value=0.011 Score=57.09 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=28.9
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~ 192 (475)
|+.....++|+||||+|||+++..++.+ .|...++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6777788999999999999999877653 2445555554
No 347
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.95 E-value=0.0036 Score=57.88 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=41.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCC---CCh----HHHHHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNA---GEP----AKLIRQRYREAADII 218 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~---Ge~----e~~Ir~~f~~A~~~~ 218 (475)
|..|.|.|.||+|||+||+++.+.+ |.+.+.+++..+...+. |-+ ..+++.+-..|+-+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~ 71 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLA 71 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999885 78899998877665432 222 345555555555333
No 348
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.93 E-value=0.0065 Score=57.14 Aligned_cols=111 Identities=15% Similarity=0.237 Sum_probs=68.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHH---hCCceEEEe---c----Cccc-------------c--CCCC----ChHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMS---A----GELE-------------S--GNAG----EPAKLIRQRY 211 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs---~----s~l~-------------s--~~~G----e~e~~Ir~~f 211 (475)
-+.+|+++|.|||++|-.+|-. .|.+++.+. . ++.. . .|.. +..+..++.|
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 3678899999999999988776 355554331 1 2210 0 0111 1235577788
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCC
Q 011914 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (475)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~L 291 (475)
+.|++.+......+|+|||+-...... -.....|..+| + ...+.+=||+|...+
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~~g------li~~~~v~~lL----~-------------~rp~~~evVlTGR~~--- 140 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALKYG------YLDVEEVVEAL----Q-------------ERPGHQHVIITGRGC--- 140 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHHCC------CcCHHHHHHHH----H-------------hCCCCCEEEEECCCC---
Confidence 888888888899999999998665431 11112333333 2 334566799999764
Q ss_pred cccccc
Q 011914 292 YAPLIR 297 (475)
Q Consensus 292 d~aLlR 297 (475)
++.|+.
T Consensus 141 p~~l~e 146 (173)
T TIGR00708 141 PQDLLE 146 (173)
T ss_pred CHHHHH
Confidence 555554
No 349
>PRK13946 shikimate kinase; Provisional
Probab=96.93 E-value=0.00078 Score=63.38 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
.++.|+|.|+||+|||++++.+|+.+|++|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3467999999999999999999999999987655
No 350
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0013 Score=73.37 Aligned_cols=143 Identities=18% Similarity=0.233 Sum_probs=79.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHH-----HHHHHHHHhCCceeEEecccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY-----REAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f-----~~A~~~~~~~~p~ILfIDEiDal 234 (475)
..+||.|-||||||.|.+.+++-+...++. ++. .+.-+|-++..++.-. -+|- .+--..+.|..|||+|++
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgk--gss~~GLTAav~rd~~tge~~LeaG-ALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGK--GSSAAGLTAAVVRDKVTGEWVLEAG-ALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEE-ccc--cccccCceeEEEEccCCCeEEEeCC-EEEEecCCEEEEEeccCC
Confidence 579999999999999999999986554332 221 1122333333333222 0111 001344679999999976
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCc-cccCCCCCceEEEecCCCC-------------CCccccccCCC
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-YNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 300 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~-~~~~~~~~V~VI~TTN~~~-------------~Ld~aLlR~GR 300 (475)
-.. .+ ..+.+-+. ...+++... +...-..+.-|++|+|... .|+++|++ |
T Consensus 396 ~~~----dr---------~aihEaME-QQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--R 459 (682)
T COG1241 396 NEE----DR---------VAIHEAME-QQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--R 459 (682)
T ss_pred ChH----HH---------HHHHHHHH-hcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--h
Confidence 322 11 11111111 111122111 1222346667888888654 47899999 9
Q ss_pred ceEEEec---CCHHHHHHHHHhhcC
Q 011914 301 MEKFYWA---PTREDRIGVCSGIFR 322 (475)
Q Consensus 301 fd~~i~~---P~~eeR~~Il~~~l~ 322 (475)
||..+.+ |+.+.=..|..+++.
T Consensus 460 FDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 460 FDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred CCeeEEecCCCCccchHHHHHHHHH
Confidence 9999883 766644445444443
No 351
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.92 E-value=0.0033 Score=59.80 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=34.2
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh-CCceEEEecCccccCC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGN 199 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el-g~~~i~vs~s~l~s~~ 199 (475)
...|..+++.|+||+|||+++..+..++ +-.++.++..++....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 3779999999999999999999999998 7788899988776443
No 352
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.91 E-value=0.00098 Score=61.41 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=27.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
.++|.|+||+|||++++.+|+.+|++++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 4788999999999999999999999887543
No 353
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.90 E-value=0.00079 Score=63.10 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=28.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
..|.|.|++|+|||++.+++|+.++.+|+.++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 45788899999999999999999999998665
No 354
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.90 E-value=0.0057 Score=72.94 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=89.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc-------cCCCCChHHH---HHHHHHHHHHHHHhCCceeE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-------SGNAGEPAKL---IRQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~-------s~~~Ge~e~~---Ir~~f~~A~~~~~~~~p~IL 226 (475)
..-+.+||-|.||+|||+|..++|+++|-.+++++.++-. +..+++.... ...-|-.|. ....-+
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~am-----r~G~WV 1615 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAM-----RDGGWV 1615 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHh-----hcCCEE
Confidence 3446799999999999999999999999999999886532 1223331111 112233332 334467
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcccc-CCCCCceEEEecCCC------CCCccccccCC
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGNDF------STLYAPLIRDG 299 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~-~~~~~V~VI~TTN~~------~~Ld~aLlR~G 299 (475)
++||+.-. + |.|..-|...+|.-....+|..-.. .-.++..|.+|-|.. ..||..++.
T Consensus 1616 lLDEiNLa-------S------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n-- 1680 (4600)
T COG5271 1616 LLDEINLA-------S------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN-- 1680 (4600)
T ss_pred Eeehhhhh-------H------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--
Confidence 89998632 1 2444445555553333333322000 112455566665543 468999999
Q ss_pred CceEEEe-cCCHHHHHHHHHhhcCC
Q 011914 300 RMEKFYW-APTREDRIGVCSGIFRT 323 (475)
Q Consensus 300 Rfd~~i~-~P~~eeR~~Il~~~l~~ 323 (475)
||..++. ..+.++...|...++..
T Consensus 1681 RFsvV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1681 RFSVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred hhheEEecccccchHHHHHHhhCCc
Confidence 9988776 56667777777766653
No 355
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.90 E-value=0.0062 Score=62.47 Aligned_cols=82 Identities=10% Similarity=0.000 Sum_probs=50.2
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH---------hCCceEEEecCccccC--------CCC----------------
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---------MGINPIMMSAGELESG--------NAG---------------- 201 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e---------lg~~~i~vs~s~l~s~--------~~G---------------- 201 (475)
|+..-....|+||||+|||.+|..+|-. .+-..++++...-++. -.|
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 5777788999999999999999887742 2346677765431100 000
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 011914 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 202 e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 237 (475)
..+.. .+++......+....+.+|+||-|-+++..
T Consensus 172 ~~e~~-~~~l~~l~~~i~~~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 172 TSEHQ-MELLDYLAAKFSEEPFRLLIVDSIMALFRV 206 (313)
T ss_pred CHHHH-HHHHHHHHHHhhccCCCEEEEEcchHhhhh
Confidence 11111 122233222334567899999999988753
No 356
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.00084 Score=62.23 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=25.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
.|-+.||||||||++|+.||+.+|++++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCcee
Confidence 3678999999999999999999999875
No 357
>PRK02496 adk adenylate kinase; Provisional
Probab=96.88 E-value=0.001 Score=62.18 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=25.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
-++|.||||+|||++|+.|++.+|+..+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48889999999999999999999876543
No 358
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.87 E-value=0.0081 Score=62.43 Aligned_cols=82 Identities=11% Similarity=-0.002 Sum_probs=49.6
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCcccc-----------CC-------------CC
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES-----------GN-------------AG 201 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s-----------~~-------------~G 201 (475)
|+..-....|+||||||||.+|..+|-.. +-..++++...-+. ++ .-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 56666789999999999999999886432 24566666533110 00 00
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 011914 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 202 e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 237 (475)
..+.. ..++......+....+.+|+||-|-+++..
T Consensus 202 ~~e~~-~~~l~~l~~~i~~~~~~LvVIDSital~r~ 236 (344)
T PLN03187 202 TYEHQ-YNLLLGLAAKMAEEPFRLLIVDSVIALFRV 236 (344)
T ss_pred CHHHH-HHHHHHHHHHHHhcCCCEEEEeCcHHhhhc
Confidence 11111 122222223344567999999999988653
No 359
>PRK14528 adenylate kinase; Provisional
Probab=96.87 E-value=0.0011 Score=62.73 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=25.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
.+++.||||+|||++|+.+++..|++.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 48899999999999999999999876543
No 360
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.87 E-value=0.0022 Score=66.52 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=41.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCC----ceEEEec-Cccc---------cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSA-GELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCC 225 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~----~~i~vs~-s~l~---------s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~I 225 (475)
..+++.||+|+|||++.+++...+.. .++.+.. .++. ...+|.........++.+. ...|.+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~l----r~~pd~ 198 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAAL----REDPDV 198 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhh----ccCCCE
Confidence 56899999999999999999987642 2333221 1111 1112221112223333333 789999
Q ss_pred EEecccc
Q 011914 226 LFINDLD 232 (475)
Q Consensus 226 LfIDEiD 232 (475)
|++||+-
T Consensus 199 i~vgEir 205 (343)
T TIGR01420 199 ILIGEMR 205 (343)
T ss_pred EEEeCCC
Confidence 9999993
No 361
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.86 E-value=0.00092 Score=64.10 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
|+|.||||+|||++|+.+|+.+|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7889999999999999999999876543
No 362
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.86 E-value=0.0043 Score=58.20 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.+.-.++|.||+|||||++.+++|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 33456999999999999999999987
No 363
>PF13245 AAA_19: Part of AAA domain
Probab=96.85 E-value=0.0018 Score=52.60 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=23.7
Q ss_pred eEEEEEcCCCccHH-HHHHHHHHHh------CCceEEEecC
Q 011914 160 LILGIWGGKGQGKS-FQCELVFAKM------GINPIMMSAG 193 (475)
Q Consensus 160 ~glLL~GPPGtGKT-~LAkaIA~el------g~~~i~vs~s 193 (475)
..+++.|||||||| ++++.++... +..++.++..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 45677999999999 5566666665 4556666544
No 364
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.83 E-value=0.0011 Score=63.86 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=27.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
-|+++||||+|||++|+.||+.+|+.. ++.+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~--is~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPH--ISTGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EECCccH
Confidence 388999999999999999999998655 4444443
No 365
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.81 E-value=0.026 Score=55.80 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=75.5
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCc--eEEEecCccccCCC---------C-----ChHHHHHHHHHHHHHHHH
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNA---------G-----EPAKLIRQRYREAADIIK 219 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~--~i~vs~s~l~s~~~---------G-----e~e~~Ir~~f~~A~~~~~ 219 (475)
.+.|--+++.|++|+|||+++..+...+.-. .+.+-.+.....+. . +.+..+...-....+..+
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 4556678888999999999999888876432 22222222111110 0 001111111111111111
Q ss_pred ------hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcc
Q 011914 220 ------KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (475)
Q Consensus 220 ------~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~ 293 (475)
...+++|+|||+.. . . ...+.+...+.+ ...-++-+|.++...-.||+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~-----~--~k~~~l~~~~~~----------------gRH~~is~i~l~Q~~~~lp~ 143 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K-----K--LKSKILRQFFNN----------------GRHYNISIIFLSQSYFHLPP 143 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c-----h--hhhHHHHHHHhc----------------ccccceEEEEEeeecccCCH
Confidence 13478999999742 1 0 011223333322 33567889999999999999
Q ss_pred ccccCCCceEEEec-CCHHHHHHHHHhhc
Q 011914 294 PLIRDGRMEKFYWA-PTREDRIGVCSGIF 321 (475)
Q Consensus 294 aLlR~GRfd~~i~~-P~~eeR~~Il~~~l 321 (475)
.++. -.+.++.+ -+..+...|++.+.
T Consensus 144 ~iR~--n~~y~i~~~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 144 NIRS--NIDYFIIFNNSKRDLENIYRNMN 170 (241)
T ss_pred HHhh--cceEEEEecCcHHHHHHHHHhcc
Confidence 9866 67776654 45555566665554
No 366
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.81 E-value=0.03 Score=59.30 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=45.8
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 235 (475)
..++ .++|+||-+||||++.+.+.+...-.++.++.-++..... .+.+.+..-.++. ......||||||..+-
T Consensus 35 ~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~-----~l~d~~~~~~~~~-~~~~~yifLDEIq~v~ 107 (398)
T COG1373 35 LRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRI-----ELLDLLRAYIELK-EREKSYIFLDEIQNVP 107 (398)
T ss_pred cCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchh-----hHHHHHHHHHHhh-ccCCceEEEecccCch
Confidence 3344 8999999999999999888888655466666655442211 1122222221111 2255799999998653
No 367
>PRK01184 hypothetical protein; Provisional
Probab=96.81 E-value=0.0012 Score=61.60 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=25.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
..|+|+||||+|||++++ ++++.|++++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 468999999999999998 788898876543
No 368
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.79 E-value=0.012 Score=56.14 Aligned_cols=23 Identities=26% Similarity=0.031 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~ 181 (475)
...++|.||.|+|||++.+.|+.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 36799999999999999999993
No 369
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.79 E-value=0.0029 Score=69.41 Aligned_cols=35 Identities=29% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCC-ceEEEec
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSA 192 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~-~~i~vs~ 192 (475)
...+++|.||||+|||+||++||+.+.. +++.+.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3468999999999999999999999754 4444444
No 370
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.00092 Score=62.55 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=26.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
.++++|.||||||++|+.++ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9998876554
No 371
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0084 Score=63.06 Aligned_cols=102 Identities=20% Similarity=0.115 Sum_probs=67.5
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhC--CceEEEecCccccCC------CC--------ChHHHHHHHHHHHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGN------AG--------EPAKLIRQRYREAADII 218 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg--~~~i~vs~s~l~s~~------~G--------e~e~~Ir~~f~~A~~~~ 218 (475)
|+-+-..+||-|.||.|||+|.-.++..+. -++++|++.+-...+ .| -.+.++..++....
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~--- 165 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE--- 165 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHH---
Confidence 333445688999999999999888887753 278899875432111 01 12334444555443
Q ss_pred HhCCceeEEeccccccccCCCCCcccchh-hHHHHHHHHhhhc
Q 011914 219 KKGKMCCLFINDLDAGAGRMGGTTQYTVN-NQMVNATLMNIAD 260 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~~r~~~~~~~~~-~~~v~~~Ll~l~d 260 (475)
..+|.+++||-|..+....-.....++. -|.+...|+++.+
T Consensus 166 -~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK 207 (456)
T COG1066 166 -QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK 207 (456)
T ss_pred -hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH
Confidence 8999999999999987754333334443 4677778888776
No 372
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.78 E-value=0.0014 Score=61.10 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
+..|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3468999999999999999999999988876553
No 373
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0081 Score=54.62 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.+...++|.||.|+|||++.++|+..+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446799999999999999999998753
No 374
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.76 E-value=0.0025 Score=65.08 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHhhhc-CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 143 VVHITKNFLN-LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 143 ~~~i~k~~l~-~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
+..+++.++. ...+.++..|+|.|+||||||++++.+|+.+|++|+.++
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 4555555443 233566788999999999999999999999999998543
No 375
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.76 E-value=0.0082 Score=65.37 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=53.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH-h---CCceEEEecCccccC---------C-----------------CC--C
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK-M---GINPIMMSAGELESG---------N-----------------AG--E 202 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e-l---g~~~i~vs~s~l~s~---------~-----------------~G--e 202 (475)
|+.+...+||+|+||+|||+++..++.+ + |-+.++++..+-... | .. +
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 5667788999999999999999877654 1 556666655221100 0 00 0
Q ss_pred ----hHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 203 ----PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 203 ----~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
....+..++.+..+.++..+|..|+||-+..+..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 0112344555555566678899999999988654
No 376
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.75 E-value=0.0075 Score=55.56 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+++.-.+.|.||.|+|||+|.+.|+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455679999999999999999999874
No 377
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.74 E-value=0.0039 Score=57.82 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=29.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhC---CceEEEec
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSA 192 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~ 192 (475)
.+.|..|+|.|+||+|||++|+.+++.+. ...+.++.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 35678899999999999999999999975 23444544
No 378
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.73 E-value=0.0011 Score=59.92 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=25.4
Q ss_pred EEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 164 L~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
|.||||+|||++|+.||++.|+ ..++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999976 556655543
No 379
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.72 E-value=0.003 Score=65.54 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=22.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el 183 (475)
..+++.|.||||||.||-.+++++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 358999999999999999999997
No 380
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.72 E-value=0.0072 Score=55.79 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCceEEEecC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s 193 (475)
.+++.||||+|||+++..++..+ |..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999988774 6666666654
No 381
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.72 E-value=0.003 Score=59.88 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.|+.++|.||+|+|||+|++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 57889999999999999999998875
No 382
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.71 E-value=0.033 Score=58.21 Aligned_cols=93 Identities=16% Similarity=0.286 Sum_probs=60.4
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc---------------CCCCChHHH-
Q 011914 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------------GNAGEPAKL- 206 (475)
Q Consensus 143 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s---------------~~~Ge~e~~- 206 (475)
.+...+.++....-..|.++.|||..|||||++.+.+.++++.+.+.+++-+... ...|..-+.
T Consensus 14 qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~ 93 (438)
T KOG2543|consen 14 QIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGD 93 (438)
T ss_pred HHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhH
Confidence 4445566665444467899999999999999999999999999888888744321 122221111
Q ss_pred ---H---HHHHHHHHHHHHhCCceeEEeccccccc
Q 011914 207 ---I---RQRYREAADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 207 ---I---r~~f~~A~~~~~~~~p~ILfIDEiDal~ 235 (475)
+ ..+|.+-..+-+..+...|++|.+|.+.
T Consensus 94 ~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr 128 (438)
T KOG2543|consen 94 AENFSDFIYLLVQWPAATNRDQKVFLILDNADALR 128 (438)
T ss_pred HHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh
Confidence 1 1223321112224467899999999885
No 383
>PRK04182 cytidylate kinase; Provisional
Probab=96.70 E-value=0.0016 Score=59.85 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=26.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
.|+|.|+||+|||++++.+|+.+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58899999999999999999999988764
No 384
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.70 E-value=0.0043 Score=62.35 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=43.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccc---cCC-CCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE---SGN-AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~---s~~-~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
-|+|+|.||+|||++|+.|+.. .+..++.++...+. +.| -...++.+|..+..+.+.. -.+..||++|+.-.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~-ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA-LSKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH-HTT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh-hccCeEEEEeCCch
Confidence 3789999999999999999987 45677777754433 112 2334788887766554332 24457999998876
Q ss_pred ccc
Q 011914 234 GAG 236 (475)
Q Consensus 234 l~~ 236 (475)
+-+
T Consensus 82 iKg 84 (270)
T PF08433_consen 82 IKG 84 (270)
T ss_dssp SHH
T ss_pred HHH
Confidence 533
No 385
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.69 E-value=0.007 Score=58.09 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.||.+....++|.|+-|+|||+.++.|+.+
T Consensus 46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCCCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 568888889999999999999999999766
No 386
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.68 E-value=0.0021 Score=60.82 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el 183 (475)
..+++||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68999999999998766666554
No 387
>PRK14974 cell division protein FtsY; Provisional
Probab=96.68 E-value=0.016 Score=60.10 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
..|..++|.||||+|||+++..+|..+ |..+..+.+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 357899999999999999888887764 555555544
No 388
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.67 E-value=0.0066 Score=57.17 Aligned_cols=77 Identities=18% Similarity=0.097 Sum_probs=42.7
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCc--eEEEecCcc--ccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGEL--ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~--~i~vs~s~l--~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEi 231 (475)
+++...+.|.||.|+|||+|.+.++...... -+.++...+ ......-+ .--++...-|+.+ ...|.++++||-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LS-gGq~qrv~laral--~~~p~lllLDEP 98 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLS-GGELQRVAIAAAL--LRNATFYLFDEP 98 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCC-HHHHHHHHHHHHH--hcCCCEEEEECC
Confidence 3445679999999999999999999874210 011111100 00111011 1112333333322 578999999998
Q ss_pred cccc
Q 011914 232 DAGA 235 (475)
Q Consensus 232 Dal~ 235 (475)
-+.+
T Consensus 99 ts~L 102 (177)
T cd03222 99 SAYL 102 (177)
T ss_pred cccC
Confidence 6543
No 389
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.67 E-value=0.0015 Score=56.25 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el 183 (475)
|+|.|+||+|||++|+.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 390
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0021 Score=67.43 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.....++|.||+|+|||+++..+|..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999876
No 391
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.66 E-value=0.0089 Score=55.90 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 195 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l 195 (475)
..++..++|.|+||+|||++++.++..+ |...+.++...+
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 3667889999999999999999999986 445566665444
No 392
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.66 E-value=0.0014 Score=63.26 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
..++||+||||||||++|+.+..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3689999999999999999999774
No 393
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.66 E-value=0.0053 Score=57.37 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el 183 (475)
...+|+||||+|||+++..++..+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 458899999999999999888763
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.66 E-value=0.014 Score=55.64 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~ 181 (475)
+.++|.||.|+|||++.+.|+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999983
No 395
>PLN02674 adenylate kinase
Probab=96.65 E-value=0.0019 Score=63.99 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
+++..|+|.||||+|||++|+.+|+..|+. .++.+++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gdll 66 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDML 66 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHH
Confidence 334568889999999999999999999864 45555443
No 396
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.63 E-value=0.016 Score=54.58 Aligned_cols=19 Identities=32% Similarity=0.050 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHH
Q 011914 162 LGIWGGKGQGKSFQCELVF 180 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA 180 (475)
++|+||.|.|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999998
No 397
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.63 E-value=0.002 Score=54.99 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el 183 (475)
+++++||+|+|||+++..++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 58999999999999888777775
No 398
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.62 E-value=0.016 Score=61.84 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s 193 (475)
.+|..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 457899999999999999999888775 6677767663
No 399
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.60 E-value=0.0045 Score=64.99 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=41.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC-----CceEEEecC-ccc-----------cCCCCChHHHHHHHHHHHHHHHHhCCc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG-ELE-----------SGNAGEPAKLIRQRYREAADIIKKGKM 223 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg-----~~~i~vs~s-~l~-----------s~~~Ge~e~~Ir~~f~~A~~~~~~~~p 223 (475)
.+|++||+|+|||++.+++...+. ..++.+..+ ++. ...+|.... .|..+...+-+..|
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~----~~~~~l~~aLR~~P 226 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVD----SFANGIRLALRRAP 226 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCcc----CHHHHHHHhhccCC
Confidence 478999999999999999988762 334444322 211 111121111 23333333337899
Q ss_pred eeEEecccc
Q 011914 224 CCLFINDLD 232 (475)
Q Consensus 224 ~ILfIDEiD 232 (475)
.+|++.|+-
T Consensus 227 D~I~vGEiR 235 (372)
T TIGR02525 227 KIIGVGEIR 235 (372)
T ss_pred CEEeeCCCC
Confidence 999999994
No 400
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.60 E-value=0.009 Score=57.15 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
|+.++|.||+|+|||+.+--+|..+ +..+..++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence 7889999999999999877777663 444444444
No 401
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.60 E-value=0.0083 Score=57.01 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 194 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~ 194 (475)
..|..+.|.|++|+|||++++.++..+ |...+.++...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~ 62 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN 62 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe
Confidence 567889999999999999999999986 44556666543
No 402
>PTZ00035 Rad51 protein; Provisional
Probab=96.59 E-value=0.018 Score=59.61 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=49.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCccccC---------C---------------CC
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG---------N---------------AG 201 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s~---------~---------------~G 201 (475)
|+.....+.|+||||+|||+++..+|... +-..++++....+.. + .-
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 66777889999999999999999887542 234455554331110 0 00
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 011914 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 202 e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 237 (475)
..+..+ .+...+..++....+.+|+||-|-+++..
T Consensus 194 ~~e~~~-~~l~~~~~~l~~~~~~lvVIDSital~r~ 228 (337)
T PTZ00035 194 NHEHQM-QLLSQAAAKMAEERFALLIVDSATALFRV 228 (337)
T ss_pred CHHHHH-HHHHHHHHHhhccCccEEEEECcHHhhhh
Confidence 011111 12222223334577899999999988653
No 403
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.59 E-value=0.0039 Score=62.95 Aligned_cols=73 Identities=16% Similarity=0.320 Sum_probs=50.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH------hCCceEEEecCccccCCCCChHH-----HHHHHHHHHH----HHHHhCCce
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK------MGINPIMMSAGELESGNAGEPAK-----LIRQRYREAA----DIIKKGKMC 224 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e------lg~~~i~vs~s~l~s~~~Ge~e~-----~Ir~~f~~A~----~~~~~~~p~ 224 (475)
.-+||.||.|.||++||+-|+.- +.-.|+.|+|..|. |.+.. .++..|.-|+ .+++.....
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlr----gd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLR----GDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeec----CchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 44899999999999999999765 45689999999886 43321 1222232221 234456677
Q ss_pred eEEecccccccc
Q 011914 225 CLFINDLDAGAG 236 (475)
Q Consensus 225 ILfIDEiDal~~ 236 (475)
.||+|||..+..
T Consensus 285 mlfldeigelga 296 (531)
T COG4650 285 MLFLDEIGELGA 296 (531)
T ss_pred eEehHhhhhcCc
Confidence 999999987643
No 404
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.59 E-value=0.0065 Score=57.23 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
....++|.||+|+|||++.++++...
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34679999999999999999999885
No 405
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.58 E-value=0.007 Score=56.06 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 194 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~ 194 (475)
.+..+.|.|+||+|||++++.++..+ |..+..++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 45689999999999999999999987 44455565543
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.58 E-value=0.011 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+...++.||.|+|||.+.++++-.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998654
No 407
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.58 E-value=0.0022 Score=58.53 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
.|.|+|++|+|||++|+.+++.+|.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 58899999999999999999999988654
No 408
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.57 E-value=0.0035 Score=49.56 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=24.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHh-CCceEEEec
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM-GINPIMMSA 192 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el-g~~~i~vs~ 192 (475)
+.+.|+||+|||++++++++.+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999996 344444443
No 409
>PF13479 AAA_24: AAA domain
Probab=96.57 E-value=0.0046 Score=59.64 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=40.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc-cCC-CC-----ChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGN-AG-----EPAKLIRQRYREAADIIKKGKMCCLFIND 230 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~-s~~-~G-----e~e~~Ir~~f~~A~~~~~~~~p~ILfIDE 230 (475)
.+..++|||+||+|||++|..+ -+.-|+.+..+... ..+ -+ .+-..+.+.+....+ .......|+||.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~--~~~~y~tiVIDs 76 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEE--DEADYDTIVIDS 76 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHh--ccCCCCEEEEEC
Confidence 4678999999999999999888 11222333333110 011 01 122333333332210 145677999998
Q ss_pred cccc
Q 011914 231 LDAG 234 (475)
Q Consensus 231 iDal 234 (475)
++.+
T Consensus 77 is~~ 80 (213)
T PF13479_consen 77 ISWL 80 (213)
T ss_pred HHHH
Confidence 8876
No 410
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.56 E-value=0.0028 Score=60.73 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCce
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINP 187 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~ 187 (475)
.|..+++.|+||+|||++|+.+|.++|+.+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 367899999999999999999999998754
No 411
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.54 E-value=0.019 Score=61.58 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 194 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~ 194 (475)
..|..++|+|++|+|||++|..+|..+ |..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 468899999999999999999998775 56666666543
No 412
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.54 E-value=0.0034 Score=67.19 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=81.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH-----hCCceeEEeccccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----KGKMCCLFINDLDA 233 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~-----~~~p~ILfIDEiDa 233 (475)
-..|+|.|-||+.||-|.+.|.+-.....+..-.+ |.-+|-++..++.-..--. .++ -....|-.|||+|+
T Consensus 375 dINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAAVmkDpvTgEM-~LEGGALVLAD~GICCIDEfDK 450 (721)
T KOG0482|consen 375 DINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAAVMKDPVTGEM-VLEGGALVLADGGICCIDEFDK 450 (721)
T ss_pred ceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchhhhcCCCCCee-EeccceEEEccCceEeehhhhh
Confidence 35699999999999999999998765544433222 3345555544443211100 000 12244778999998
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-------------CCccccccCCC
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 300 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-------------~Ld~aLlR~GR 300 (475)
+..... ..-+++. .+.-..|.+ -|. +..-+.+.-|++++|... .||+||++ |
T Consensus 451 M~e~DR-tAIHEVM----EQQTISIaK-------AGI-~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLS--R 515 (721)
T KOG0482|consen 451 MDESDR-TAIHEVM----EQQTISIAK-------AGI-NTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--R 515 (721)
T ss_pred hhhhhh-HHHHHHH----Hhhhhhhhh-------hcc-ccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHH--h
Confidence 865311 1111221 111112221 121 223356777888887542 48999999 9
Q ss_pred ceEEEe---cCCHHHHHHHHHh
Q 011914 301 MEKFYW---APTREDRIGVCSG 319 (475)
Q Consensus 301 fd~~i~---~P~~eeR~~Il~~ 319 (475)
||.... .|+++.=+.+-++
T Consensus 516 FDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 516 FDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred hhhhhhhccCCcccchHHHHHH
Confidence 998766 4888776666553
No 413
>PLN02459 probable adenylate kinase
Probab=96.53 E-value=0.0032 Score=62.91 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
.|..++|.||||+|||++|+.+|+.+|+. .++.+++.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~--~is~gdll 64 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVP--HIATGDLV 64 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCc--EEeCcHHH
Confidence 34457778999999999999999999864 45555443
No 414
>PRK14526 adenylate kinase; Provisional
Probab=96.53 E-value=0.0023 Score=61.90 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCcc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l 195 (475)
++|+||||+|||++++.+|..+++.. ++.+++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH--ISTGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce--eecChH
Confidence 78899999999999999999988654 555554
No 415
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.52 E-value=0.0065 Score=71.85 Aligned_cols=168 Identities=12% Similarity=0.117 Sum_probs=93.6
Q ss_pred CCeEEEEEcCCCccHHHH-HHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHH-----HHHH-hC----CceeE
Q 011914 158 VPLILGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA-----DIIK-KG----KMCCL 226 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~L-AkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----~~~~-~~----~p~IL 226 (475)
.-++++++||||+|||+| +-++-+++-..++.++.+... .++..++.+=+... .+.. .. +--||
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhheEE
Confidence 457899999999999996 678888888888888776543 12323332222110 0000 01 12399
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcccc-----CCCCCceEEEecCCCCCCc-----cccc
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-----EENPRVPIIVTGNDFSTLY-----APLI 296 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~-----~~~~~V~VI~TTN~~~~Ld-----~aLl 296 (475)
|.|||. +-..+.-..+ .|.-+|..++ +-.|+|.. ....++.|.+++|.+...- ..++
T Consensus 1568 FcDeIn-Lp~~~~y~~~------~vI~FlR~l~------e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~ 1634 (3164)
T COG5245 1568 FCDEIN-LPYGFEYYPP------TVIVFLRPLV------ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFI 1634 (3164)
T ss_pred EeeccC-CccccccCCC------ceEEeeHHHH------HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHh
Confidence 999999 3222221111 1111222222 23456654 2346788888998775432 3344
Q ss_pred cCCCceEEEe--cCCHHHHHHHHHhhcCCCCCChHHHHHHHhcCCCCchhhH
Q 011914 297 RDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFF 346 (475)
Q Consensus 297 R~GRfd~~i~--~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~~g~~i~f~ 346 (475)
| -..+++ .|.......|...++...-+-.++...++..+..+...++
T Consensus 1635 r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly 1683 (3164)
T COG5245 1635 R---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELY 1683 (3164)
T ss_pred c---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4 233444 6999999999887776643444444444444444444444
No 416
>PRK10867 signal recognition particle protein; Provisional
Probab=96.52 E-value=0.02 Score=61.22 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEecC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 193 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~s 193 (475)
.+|..+++.||+|+|||+++.-+|..+ |..+..+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 458899999999999999777776653 6667777764
No 417
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.51 E-value=0.0062 Score=54.85 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~ 186 (475)
++...++|.|+.|+|||++++.+++.+|..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 445689999999999999999999999865
No 418
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.51 E-value=0.012 Score=61.21 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=49.9
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCcccc---------CCC---------------C
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES---------GNA---------------G 201 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s---------~~~---------------G 201 (475)
|+..-..+.++|+||+|||.+|..+|-.. +-..++++...-++ .+- -
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 56666789999999999999999877442 12566666543110 000 0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 011914 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 202 e~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 237 (475)
..+. +..++..+...+....+.+|+||-|-+++..
T Consensus 199 ~~e~-~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 199 NTDH-QSELLLEAASMMAETRFALMIVDSATALYRT 233 (342)
T ss_pred CHHH-HHHHHHHHHHHhhccCCCEEEEeCcHHHHHH
Confidence 0111 1122233323344678999999999988653
No 419
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.50 E-value=0.031 Score=56.53 Aligned_cols=33 Identities=24% Similarity=0.548 Sum_probs=28.0
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~ 186 (475)
+....|..|.|+|+=|+|||++.+.+-+++.-.
T Consensus 15 ~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 15 PDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 334788999999999999999999998886544
No 420
>PRK12338 hypothetical protein; Provisional
Probab=96.50 E-value=0.0029 Score=64.97 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
..|..+++.|+||+|||++|+++|..+|+..+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 35789999999999999999999999998653
No 421
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.50 E-value=0.024 Score=54.56 Aligned_cols=26 Identities=19% Similarity=-0.031 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+....++|.||.|+|||++.+.++.-
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33477999999999999999998743
No 422
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.50 E-value=0.0036 Score=63.80 Aligned_cols=70 Identities=13% Similarity=0.253 Sum_probs=43.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC-----CceEEEec-CccccC-------CCCChHHHHHHHHHHHHHHHHhCCcee
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSA-GELESG-------NAGEPAKLIRQRYREAADIIKKGKMCC 225 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg-----~~~i~vs~-s~l~s~-------~~Ge~e~~Ir~~f~~A~~~~~~~~p~I 225 (475)
...+++.||+|+|||+++++++..+. ..++.+.. .++.-. ..++....+.++.+.+. +..|..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aL----R~~pD~ 207 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATL----RLRPDR 207 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHh----cCCCCE
Confidence 36799999999999999999998862 23333322 111100 01111113344555454 789999
Q ss_pred EEecccc
Q 011914 226 LFINDLD 232 (475)
Q Consensus 226 LfIDEiD 232 (475)
|++.|+-
T Consensus 208 iivGEiR 214 (299)
T TIGR02782 208 IIVGEVR 214 (299)
T ss_pred EEEeccC
Confidence 9999994
No 423
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.49 E-value=0.0027 Score=69.64 Aligned_cols=167 Identities=16% Similarity=0.248 Sum_probs=98.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhC--CceEEEecCccc-----cCCCCChHHHHHHHHHHHH-HHHHhCCceeEEeccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELE-----SGNAGEPAKLIRQRYREAA-DIIKKGKMCCLFINDL 231 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg--~~~i~vs~s~l~-----s~~~Ge~e~~Ir~~f~~A~-~~~~~~~p~ILfIDEi 231 (475)
.-+|+.|.|||||-.++++|-.... -+|+-|++..+- +.++|-.+......+.+-. ...+......||+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 3499999999999999999977754 488889886543 2222221111111111100 0011233458999999
Q ss_pred cccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-----
Q 011914 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW----- 306 (475)
Q Consensus 232 Dal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~----- 306 (475)
..+.- .+...|+..+.+-+-+.++|. ...=.|-||+||++.= ..|.+.|||-+-+|
T Consensus 417 gd~p~-------------~~Qs~LLrVl~e~~v~p~g~~---~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 417 GDMPL-------------ALQSRLLRVLQEGVVTPLGGT---RIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNA 477 (606)
T ss_pred hhchH-------------HHHHHHHHHHhhCceeccCCc---ceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcC
Confidence 86532 234567777765666666665 2445678999998742 35788888865332
Q ss_pred ----cCCHHHH---HHHHHhhcCC-----CCCChHHHHHH-HhcCCCCchhh
Q 011914 307 ----APTREDR---IGVCSGIFRT-----DNVPKEDIVKL-VDTFPGQSIDF 345 (475)
Q Consensus 307 ----~P~~eeR---~~Il~~~l~~-----~~v~~~~l~~l-~~~~~g~~i~f 345 (475)
+|...+| ..++..++.. ..++.+.+..| +-.+||..-++
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel 529 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIREL 529 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHH
Confidence 4755555 4555555543 34556666654 45677765553
No 424
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.48 E-value=0.013 Score=58.80 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s 193 (475)
..|+.++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 457889999999999999988888764 5556556554
No 425
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.48 E-value=0.004 Score=68.22 Aligned_cols=144 Identities=22% Similarity=0.287 Sum_probs=77.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHH--HHH---HHHHHHHhCCceeEEecccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ--RYR---EAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~--~f~---~A~~~~~~~~p~ILfIDEiDal 234 (475)
..++|.|-||+|||-+.+++++-+...+ ++++. .+.-.|-+...+++ .++ +|-.++ -....|-.|||+|++
T Consensus 379 inv~iVGDPgt~KSQfLk~v~~fsPR~v-YtsGk--aSSaAGLTaaVvkD~esgdf~iEAGALm-LADnGICCIDEFDKM 454 (764)
T KOG0480|consen 379 INVCIVGDPGTGKSQFLKAVCAFSPRSV-YTSGK--ASSAAGLTAAVVKDEESGDFTIEAGALM-LADNGICCIDEFDKM 454 (764)
T ss_pred ceEEEeCCCCccHHHHHHHHhccCCcce-EecCc--ccccccceEEEEecCCCCceeeecCcEE-EccCceEEechhccc
Confidence 5699999999999999999998865543 33331 11112222111110 001 111111 223446779999987
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-------------CCccccccCCCc
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGRM 301 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-------------~Ld~aLlR~GRf 301 (475)
--+ .+-.....|-.+++ .|.+ -|+ ...-..+.-||+|+|... .+.++|++ ||
T Consensus 455 d~~----dqvAihEAMEQQtI-SIaK-------AGv-~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RF 519 (764)
T KOG0480|consen 455 DVK----DQVAIHEAMEQQTI-SIAK-------AGV-VATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RF 519 (764)
T ss_pred ChH----hHHHHHHHHHhhee-hhee-------cce-EEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hh
Confidence 432 12111111111111 1111 122 112235566888888652 47899999 99
Q ss_pred eEEEec---CCHHHHHHHHHhhcC
Q 011914 302 EKFYWA---PTREDRIGVCSGIFR 322 (475)
Q Consensus 302 d~~i~~---P~~eeR~~Il~~~l~ 322 (475)
|.+|.+ |++..=..|-++++.
T Consensus 520 DL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 520 DLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred cEEEEEecCCchHHHHHHHHHHHH
Confidence 999883 777776666665554
No 426
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.46 E-value=0.0024 Score=58.45 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
|.|+|+||||||+|++.+++. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999999 77765
No 427
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.45 E-value=0.0011 Score=63.88 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el 183 (475)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999985
No 428
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.45 E-value=0.0048 Score=58.92 Aligned_cols=37 Identities=30% Similarity=0.638 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC-CceEEEecC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG-INPIMMSAG 193 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg-~~~i~vs~s 193 (475)
..|..|.|.|++|+|||+|+++|++.++ ..+..++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 5678999999999999999999999984 234444443
No 429
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.40 E-value=0.0056 Score=63.30 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=63.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCceeEEec
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 229 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s---------~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfID 229 (475)
+||.|..||||-++|++.-... ..+|+-++|..+-. --+|..++ ...|+.| ...-+|+|
T Consensus 230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk--~GffE~A-------ngGTVlLD 300 (511)
T COG3283 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGK--KGFFEQA-------NGGTVLLD 300 (511)
T ss_pred eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCc--cchhhhc-------cCCeEEee
Confidence 8999999999999999876653 56999999965532 11221111 2455544 25568999
Q ss_pred cccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC
Q 011914 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (475)
Q Consensus 230 EiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~ 288 (475)
||..+.++ +..-|+..+.+-+.-.+.+. .+..-+|-||+||..+
T Consensus 301 eIgEmSp~-------------lQaKLLRFL~DGtFRRVGee--~Ev~vdVRVIcatq~n 344 (511)
T COG3283 301 EIGEMSPR-------------LQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQVN 344 (511)
T ss_pred hhhhcCHH-------------HHHHHHHHhcCCceeecCCc--ceEEEEEEEEeccccc
Confidence 99866543 33445555553222222211 1234578999999653
No 430
>PRK13975 thymidylate kinase; Provisional
Probab=96.40 E-value=0.0058 Score=57.40 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=25.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCce
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINP 187 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~ 187 (475)
+.|.|.|++|+|||++++.+++.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 5688999999999999999999998643
No 431
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.38 E-value=0.015 Score=54.96 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
++...++|.||+|+|||+|++.++....
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3457899999999999999999999875
No 432
>PTZ00202 tuzin; Provisional
Probab=96.37 E-value=0.019 Score=61.43 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=34.7
Q ss_pred HhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecC
Q 011914 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (475)
Q Consensus 148 k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s 193 (475)
+..+.......|..+.|.||+|||||++++.+...++...+.++..
T Consensus 275 r~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 275 RQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred HHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 3333333445678999999999999999999999998766665553
No 433
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.013 Score=57.94 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
--.+-|.||+|||||||.+.||.-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999987
No 434
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.36 E-value=0.012 Score=63.93 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=51.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccC------CCCC-hHH-----------------HH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE-PAK-----------------LI 207 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~------~~Ge-~e~-----------------~I 207 (475)
|+.+...+|+.||||+|||+++-.++.+. |-+.++++..+-... -.|- .+. .+
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56667789999999999999999888763 556777765332110 0010 000 00
Q ss_pred HHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 208 RQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 208 r~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
........+.++...|.+|+||-+-.+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 12222223334477899999999987743
No 435
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.35 E-value=0.019 Score=59.00 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=49.7
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh------C---CceEEEecCccccCC--------CC-C--------------
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM------G---INPIMMSAGELESGN--------AG-E-------------- 202 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el------g---~~~i~vs~s~l~s~~--------~G-e-------------- 202 (475)
|+.+-..+.++||||+|||++|..+|... | -..++++.....+.. .+ .
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 66777889999999999999999887632 1 245666654421110 00 0
Q ss_pred -hHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 011914 203 -PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 203 -~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 237 (475)
.+.. ..+.......+....+.+|+||-|-+++..
T Consensus 172 ~~~~~-~~~l~~~~~~~~~~~~~LvVIDSI~al~r~ 206 (316)
T TIGR02239 172 NTDHQ-LQLLQQAAAMMSESRFALLIVDSATALYRT 206 (316)
T ss_pred ChHHH-HHHHHHHHHhhccCCccEEEEECcHHHhhh
Confidence 1111 112222222333567899999999988643
No 436
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.33 E-value=0.017 Score=62.77 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=30.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH----hCCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e----lg~~~i~vs~ 192 (475)
|+.+...+||.||||||||++|..++.+ .|-+.++++.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 6777789999999999999999987443 2567666664
No 437
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.32 E-value=0.035 Score=54.27 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHHH
Q 011914 162 LGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~e 182 (475)
-+|+||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999988865
No 438
>PRK05439 pantothenate kinase; Provisional
Probab=96.28 E-value=0.0066 Score=62.21 Aligned_cols=40 Identities=35% Similarity=0.484 Sum_probs=32.6
Q ss_pred HHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
...+.|+.....+.|..|+|.|+||+|||++|+.++..++
T Consensus 72 ~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 72 AALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445566655667899999999999999999999998764
No 439
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.27 E-value=0.0066 Score=60.31 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCc---eEEEec-CccccCCCC-------ChHHHHHHHHHHHHHHHHhCCceeE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSA-GELESGNAG-------EPAKLIRQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~---~i~vs~-s~l~s~~~G-------e~e~~Ir~~f~~A~~~~~~~~p~IL 226 (475)
....+++.||+|+|||++.+++..++.-. ++.+.. .++.-.... .......+++..+. +..|.+|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~L----R~~pD~i 201 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSAL----RQDPDVI 201 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHT----TS--SEE
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHh----cCCCCcc
Confidence 34779999999999999999999986433 333322 222111100 11122334444444 7889999
Q ss_pred Eecccc
Q 011914 227 FINDLD 232 (475)
Q Consensus 227 fIDEiD 232 (475)
+|.|+-
T Consensus 202 iigEiR 207 (270)
T PF00437_consen 202 IIGEIR 207 (270)
T ss_dssp EESCE-
T ss_pred cccccC
Confidence 999995
No 440
>PRK14529 adenylate kinase; Provisional
Probab=96.27 E-value=0.0035 Score=61.24 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=28.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 197 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s 197 (475)
|+|.||||+|||++|+.|++.+++.. ++.+.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~--is~gdllr 36 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAH--IESGAIFR 36 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC--cccchhhh
Confidence 78899999999999999999998765 45555543
No 441
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.26 E-value=0.011 Score=53.40 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+++...+.|.||.|+|||+|+++++...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3445679999999999999999999874
No 442
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.25 E-value=0.0075 Score=62.36 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=45.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCC--ceEEEe-cCcccc-C------------CCCChHHHHHHHHHHHHHHHHhC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELES-G------------NAGEPAKLIRQRYREAADIIKKG 221 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~--~~i~vs-~s~l~s-~------------~~Ge~e~~Ir~~f~~A~~~~~~~ 221 (475)
..+.+++.|++|+|||++.+++.....- .++.+- ..++.- . ..|...-.+.++.+.+. +.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~L----R~ 234 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACL----RL 234 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHh----cc
Confidence 4467999999999999999999998642 222221 112210 0 01111223345555555 88
Q ss_pred CceeEEecccc
Q 011914 222 KMCCLFINDLD 232 (475)
Q Consensus 222 ~p~ILfIDEiD 232 (475)
.|..|++.|+-
T Consensus 235 ~PD~IivGEiR 245 (332)
T PRK13900 235 RPDRIIVGELR 245 (332)
T ss_pred CCCeEEEEecC
Confidence 99999999995
No 443
>PRK13764 ATPase; Provisional
Probab=96.25 E-value=0.0062 Score=67.50 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
..++|++||||+|||+++++++..+.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46799999999999999999998864
No 444
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.22 E-value=0.042 Score=53.25 Aligned_cols=22 Identities=36% Similarity=0.152 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~ 181 (475)
..++|.||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999974
No 445
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.016 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.+...+.|.||.|+|||+|.+.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344579999999999999999999863
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.21 E-value=0.0081 Score=61.34 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=44.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCC--ceEEEe-cCccccCC------------CCChHHHHHHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELESGN------------AGEPAKLIRQRYREAADIIKK 220 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~--~~i~vs-~s~l~s~~------------~Ge~e~~Ir~~f~~A~~~~~~ 220 (475)
++....+++.||+|+|||+++++++..+.- ..+.+. ..++.-.. .+...-.+.+++..+. +
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~L----r 216 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCL----R 216 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHh----c
Confidence 344578999999999999999999988532 222221 11111000 0111122334455444 7
Q ss_pred CCceeEEecccc
Q 011914 221 GKMCCLFINDLD 232 (475)
Q Consensus 221 ~~p~ILfIDEiD 232 (475)
..|.+|++||+-
T Consensus 217 ~~pd~ii~gE~r 228 (308)
T TIGR02788 217 MRPDRIILGELR 228 (308)
T ss_pred CCCCeEEEeccC
Confidence 889999999996
No 447
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.20 E-value=0.12 Score=59.54 Aligned_cols=35 Identities=17% Similarity=-0.058 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
...+.++|+||+|.|||+++...+...+ .+.-++.
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 3456799999999999999999887766 4444443
No 448
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.20 E-value=0.039 Score=53.90 Aligned_cols=25 Identities=24% Similarity=-0.051 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~ 181 (475)
.....++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999999988
No 449
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.19 E-value=0.019 Score=63.39 Aligned_cols=27 Identities=26% Similarity=0.155 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+++-..+||.||+|||||+|.|+||.-
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344456999999999999999999987
No 450
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.017 Score=54.79 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.+.++|.||+|+|||++++++.+..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~ 29 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDK 29 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46788999999999999999998863
No 451
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.17 E-value=0.0059 Score=62.17 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=29.6
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCce
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINP 187 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~ 187 (475)
+.+.|..+++.|++|||||++|..+|+.+|.+.
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 346789999999999999999999999998873
No 452
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.14 E-value=0.022 Score=51.12 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~ 186 (475)
++|.||+|+|||++++.+++.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999986543
No 453
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.14 E-value=0.0097 Score=61.32 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
...+.|.|+||+|||+|++.++...+.+++.-.+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~ 195 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYA 195 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehh
Confidence 3578999999999999999999999988765444
No 454
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.14 E-value=0.048 Score=58.38 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH----hCCceEEEecC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAG 193 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e----lg~~~i~vs~s 193 (475)
..|..+++.|++|+|||++|.-+|.. .|..+..+++.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 35889999999999999998777765 35667777664
No 455
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.13 E-value=0.0087 Score=60.79 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=30.9
Q ss_pred HHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 146 i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
..+.|+.....+.|..+.|.||+|+||||+|+.+...+.
T Consensus 49 ~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 49 VLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344555555567899999999999999999998877753
No 456
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.10 E-value=0.0085 Score=61.75 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=43.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEe-cCccccCC------CCChHHHHHHHHHHHHHHHHhCCceeE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMS-AGELESGN------AGEPAKLIRQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs-~s~l~s~~------~Ge~e~~Ir~~f~~A~~~~~~~~p~IL 226 (475)
...+++.|++|+|||++.++++... +..++.+- ..++.-.. .....-....+.+.+. +..|..|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aL----R~~PD~I 219 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTM----RLRPDRI 219 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHh----CCCCCEE
Confidence 3579999999999999999999885 22333332 22222100 0011112334444444 8999999
Q ss_pred Eecccc
Q 011914 227 FINDLD 232 (475)
Q Consensus 227 fIDEiD 232 (475)
++.|+-
T Consensus 220 ivGEiR 225 (323)
T PRK13833 220 IVGEVR 225 (323)
T ss_pred EEeecC
Confidence 999984
No 457
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.08 E-value=0.0088 Score=61.52 Aligned_cols=71 Identities=11% Similarity=0.213 Sum_probs=44.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEe-cCccccC------CCCChHHHHHHHHHHHHHHHHhCCcee
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMS-AGELESG------NAGEPAKLIRQRYREAADIIKKGKMCC 225 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs-~s~l~s~------~~Ge~e~~Ir~~f~~A~~~~~~~~p~I 225 (475)
....+++.|++|+|||+++++++.+. ...++.+. ..++.-. +....+-.+.++++.+. +..|..
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aL----R~~PD~ 222 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTL----RMRPDR 222 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHh----cCCCCE
Confidence 34679999999999999999999873 12233222 1222100 00011122445555555 899999
Q ss_pred EEecccc
Q 011914 226 LFINDLD 232 (475)
Q Consensus 226 LfIDEiD 232 (475)
|++.|+-
T Consensus 223 IivGEiR 229 (319)
T PRK13894 223 ILVGEVR 229 (319)
T ss_pred EEEeccC
Confidence 9999994
No 458
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.08 E-value=0.022 Score=56.77 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=50.4
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCcccc---------CCCCChHHH---------
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES---------GNAGEPAKL--------- 206 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s---------~~~Ge~e~~--------- 206 (475)
.|+......=|+||||+|||.+|-.+|-.. +...++++...-++ .+.-+.++.
T Consensus 33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~ 112 (256)
T PF08423_consen 33 GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRV 112 (256)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-
T ss_pred CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeec
Confidence 356666777799999999999999888663 33467776532111 111111111
Q ss_pred -----HHHHHHHHHHHHHhCCceeEEeccccccccC
Q 011914 207 -----IRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 207 -----Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 237 (475)
+..+.......+...+..+|+||-|-+++..
T Consensus 113 ~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~ 148 (256)
T PF08423_consen 113 FDLEELLELLEQLPKLLSESKIKLIVIDSIAALFRS 148 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHH
T ss_pred CCHHHHHHHHHHHHhhccccceEEEEecchHHHHHH
Confidence 1122222223333667889999999998753
No 459
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.05 E-value=0.0058 Score=57.82 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.|.|.||+|+|||++|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999986
No 460
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.04 E-value=0.017 Score=59.46 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=78.0
Q ss_pred CeEEEEEcCCCccHHHHHHH-HH--HHhCCceEEEecCccccC---------------------CCCChHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCEL-VF--AKMGINPIMMSAGELESG---------------------NAGEPAKLIRQRYREA 214 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAka-IA--~elg~~~i~vs~s~l~s~---------------------~~Ge~e~~Ir~~f~~A 214 (475)
...+++.||.|+|||.+... ++ ++.|-+|+.+........ -.|....++..+.
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL--- 125 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLL--- 125 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHH---
Confidence 45699999999999997553 33 367778877664322110 1111111111111
Q ss_pred HHHHH-----hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC
Q 011914 215 ADIIK-----KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 289 (475)
Q Consensus 215 ~~~~~-----~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~ 289 (475)
..++ ...+.|.++||+|-.++-- .| ..|.++.| ........+.||+.|.+.+
T Consensus 126 -~~L~~~~~~t~~~ViFIldEfDlf~~h~---rQ---------tllYnlfD----------isqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 126 -EALKKGDETTSGKVIFILDEFDLFAPHS---RQ---------TLLYNLFD----------ISQSARAPICIIGVTTRLD 182 (408)
T ss_pred -HHHhcCCCCCCceEEEEeehhhccccch---hh---------HHHHHHHH----------HHhhcCCCeEEEEeecccc
Confidence 1122 1223455668999876531 12 34667666 2223456677888776655
Q ss_pred C---CccccccCCCceEE-Ee-c--CCHHHHHHHHHhhcC
Q 011914 290 T---LYAPLIRDGRMEKF-YW-A--PTREDRIGVCSGIFR 322 (475)
Q Consensus 290 ~---Ld~aLlR~GRfd~~-i~-~--P~~eeR~~Il~~~l~ 322 (475)
. |...+.+ ||... |+ . -..++-..|++..+.
T Consensus 183 ~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 183 ILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 4 4456777 89876 55 2 257888888887773
No 461
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.03 E-value=0.021 Score=57.63 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh----C-CceEEEecCc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM----G-INPIMMSAGE 194 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el----g-~~~i~vs~s~ 194 (475)
..+..++|.||+|+|||+++..+|..+ | ..+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 356789999999999999999888764 4 5666666543
No 462
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.02 E-value=0.0081 Score=58.28 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=29.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 197 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s 197 (475)
+.++|+||+|||||.+|-++|++.|.+++..+.-.+..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 45899999999999999999999999999988765543
No 463
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.02 E-value=0.0065 Score=56.87 Aligned_cols=32 Identities=38% Similarity=0.634 Sum_probs=26.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
|+|+|+||+|||++++.+++ +|++++ ++..+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~~ 33 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKIA 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHHH
Confidence 78999999999999999999 787654 444443
No 464
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.01 E-value=0.052 Score=57.82 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=28.9
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH----hCCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e----lg~~~i~vs~ 192 (475)
|..+..-++|.|+||+|||+++..+|.. .|.+++.++.
T Consensus 191 G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~Sl 232 (434)
T TIGR00665 191 GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSL 232 (434)
T ss_pred CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 5666667899999999999998877665 3666666554
No 465
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.00 E-value=0.028 Score=57.79 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
..|..++|.||+|+|||+++..+|..+ |..+..+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 457889999999999999999998875 445555544
No 466
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.00 E-value=0.014 Score=55.55 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=23.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh-------CCceEEEecC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM-------GINPIMMSAG 193 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el-------g~~~i~vs~s 193 (475)
++|+.|++|+|||++.++++..+ ...++.++..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 79999999999999999887773 3455556653
No 467
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=95.99 E-value=0.0089 Score=57.66 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
..|..|.|+|++|||||++++.+++++|.+++.
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vid 36 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVC 36 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 356789999999999999999999999988654
No 468
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.99 E-value=0.012 Score=62.44 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
..+.|.|.|++|||||+|++++|+..|...+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 34679999999999999999999998876543
No 469
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.98 E-value=0.013 Score=58.58 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=41.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhC---CceEEEec-CccccCCCCCh--HHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSA-GELESGNAGEP--AKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~-s~l~s~~~Ge~--e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..++|.||+|+|||++.+++...+. ..++.+.. .++.-...-.. .......|..+...+-+..|.+|+|+|+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 3589999999999999999987763 23444422 12211100000 00001123333333337889999999995
No 470
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.98 E-value=0.032 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg 184 (475)
...|+||.|+|||.+..||+-.++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 677999999999999999987754
No 471
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.97 E-value=0.056 Score=50.06 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||+|.+.|+...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344679999999999999999999874
No 472
>PRK13808 adenylate kinase; Provisional
Probab=95.97 E-value=0.0063 Score=62.88 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=27.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
|+|+||||+|||++|+.|+..+|+. +++.++++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~--~is~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV--QLSTGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--eecccHHH
Confidence 7889999999999999999999874 45555443
No 473
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.97 E-value=0.0083 Score=59.42 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCce
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINP 187 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~ 187 (475)
...+.|.++||=|+||+|||++|.-+|..+|+.-
T Consensus 84 r~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~ 117 (299)
T COG2074 84 RKMKRPLIILIGGASGVGKSTIAGELARRLGIRS 117 (299)
T ss_pred hccCCCeEEEecCCCCCChhHHHHHHHHHcCCce
Confidence 3567899999999999999999999999999864
No 474
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.96 E-value=0.056 Score=49.88 Aligned_cols=28 Identities=29% Similarity=0.135 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+.+...+.|.||.|+|||+|++.++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455679999999999999999999884
No 475
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.96 E-value=0.0063 Score=57.17 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=24.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
..++|.||+|+|||++++.++...+..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35889999999999999999998876543
No 476
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.96 E-value=0.017 Score=54.18 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
++.++|.||+|+||+++++.+..+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3578999999999999999999985
No 477
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.94 E-value=0.0072 Score=57.79 Aligned_cols=27 Identities=33% Similarity=0.722 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.+..+.|.||+|+|||+++++|+..++
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346788999999999999999999875
No 478
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.93 E-value=0.043 Score=59.82 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=51.2
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccCC------CC-----------------Ch-HHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGN------AG-----------------EP-AKLI 207 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~~------~G-----------------e~-e~~I 207 (475)
|+.....++|+|+||+|||+++..++.+ .|-+.++++..+-.... .| .+ ...+
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 5666678999999999999999988765 36677777653211000 00 00 0011
Q ss_pred HHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 208 RQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 208 r~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
...+....+.++..++.+|+||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22233333344577899999999988754
No 479
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.063 Score=56.75 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
..|..++|+||+|+|||+.+.-+|..+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999888764
No 480
>PRK08356 hypothetical protein; Provisional
Probab=95.92 E-value=0.0087 Score=56.71 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~ 194 (475)
..++|.||||+|||++|+.+. +.|+. .++.++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence 468899999999999999995 46665 556554
No 481
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.90 E-value=0.017 Score=63.25 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=40.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~IL 226 (475)
..|..++|+|+||+|||++|+.++...|.. .++...+ |. .......|.+.++.+.+.||
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~--~vn~D~l-----g~----~~~~~~~a~~~L~~G~sVVI 425 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYK--HVNADTL-----GS----TQNCLTACERALDQGKRCAI 425 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCe--EECcHHH-----HH----HHHHHHHHHHHHhCCCcEEE
Confidence 567899999999999999999999987754 4444433 11 22334455555656666443
No 482
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.88 E-value=0.084 Score=49.95 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+.+...+.|.||+|+|||+|.+.|+...
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455679999999999999999999876
No 483
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.86 E-value=0.0088 Score=57.07 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=27.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l 195 (475)
.|.|+|++|+|||++++.+++.+|.+++ ++..+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~ 35 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIY 35 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHH
Confidence 5899999999999999999998888775 44444
No 484
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0041 Score=66.39 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+++||+|||||||||+|+.+..-
T Consensus 199 HnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 199 HNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcEEEecCCCCchHHhhhhhccc
Confidence 67999999999999999987665
No 485
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.85 E-value=0.0071 Score=57.56 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=24.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHh-CCceEEE
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM-GINPIMM 190 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el-g~~~i~v 190 (475)
|.+.|+||+|||++|+.+++.+ ++.++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~ 31 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQ 31 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEcc
Confidence 6889999999999999999998 4444433
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.85 E-value=0.0076 Score=55.88 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGI 185 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~ 185 (475)
.++|.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998754
No 487
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.82 E-value=0.01 Score=57.67 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=26.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
..+.|.||+|+|||++++.||+++++.++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46889999999999999999999998765
No 488
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.82 E-value=0.012 Score=61.13 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=44.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC--ceEEEec-CccccC--------C----CCChHHHHHHHHHHHHHHHHhC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSA-GELESG--------N----AGEPAKLIRQRYREAADIIKKG 221 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~--~~i~vs~-s~l~s~--------~----~Ge~e~~Ir~~f~~A~~~~~~~ 221 (475)
+..+.+|+.||+|+|||+++++++..+.. .++.+.. .++.-. + .|...-....+++.+. +.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~L----R~ 235 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASL----RM 235 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHh----cC
Confidence 34467999999999999999999998543 2222211 111100 0 0111122334555554 78
Q ss_pred CceeEEecccc
Q 011914 222 KMCCLFINDLD 232 (475)
Q Consensus 222 ~p~ILfIDEiD 232 (475)
.|..|++.|+-
T Consensus 236 ~pD~IivGEiR 246 (344)
T PRK13851 236 RPDRILLGEMR 246 (344)
T ss_pred CCCeEEEEeeC
Confidence 89999999984
No 489
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.82 E-value=0.059 Score=57.28 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=29.7
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH----hCCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e----lg~~~i~vs~ 192 (475)
|..+.-.++|.|+||+|||++|-.+|.. .|.+++.++.
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl 231 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL 231 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 6666677999999999999999988844 3666666663
No 490
>PLN02199 shikimate kinase
Probab=95.81 E-value=0.0097 Score=60.49 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
...|+|.|++|+|||++++.+|+.+|++|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 357899999999999999999999999987654
No 491
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.80 E-value=0.033 Score=55.02 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=29.6
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~ 192 (475)
|..+..-++|.|.||.|||+++..+|..+ +.++++++.
T Consensus 15 G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~Sl 56 (259)
T PF03796_consen 15 GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSL 56 (259)
T ss_dssp SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcC
Confidence 55666678999999999999999888863 577888776
No 492
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.018 Score=55.74 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg 184 (475)
-|+|.|+||+|||++|+-+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999964
No 493
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.78 E-value=0.0067 Score=56.18 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGI 185 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~ 185 (475)
+.++|.||+|+|||++++.+++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46899999999999999999997654
No 494
>PRK05748 replicative DNA helicase; Provisional
Probab=95.78 E-value=0.086 Score=56.58 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=29.1
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH----hCCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e----lg~~~i~vs~ 192 (475)
|..+...++|-|+||+|||+++-.++.. .|.+++.++.
T Consensus 199 G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSl 240 (448)
T PRK05748 199 GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSL 240 (448)
T ss_pred CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeC
Confidence 5666677999999999999999888755 3666655553
No 495
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.77 E-value=0.011 Score=61.75 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
..|..+.+.||.|||||++.++|.+.+.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 4567899999999999999999988863
No 496
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.77 E-value=0.0069 Score=61.34 Aligned_cols=57 Identities=19% Similarity=0.168 Sum_probs=46.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCC--ceEEEecCccccCCCCChHHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREAA 215 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~--~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~ 215 (475)
..+.+|+.|+||+|||.+|-.+++.+|- +|..++++++.+--...++ .+.+.|+++.
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTE-AltQAfRksi 123 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTE-ALTQAFRKSI 123 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHH-HHHHHHHHhh
Confidence 4588999999999999999999999984 8999999998875555554 4567787764
No 497
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.76 E-value=0.011 Score=60.51 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
.++.++|.||+|+|||++|..+|++++..++..+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 35689999999999999999999999877665544
No 498
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.76 E-value=0.049 Score=55.35 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=43.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
.+..+.++|+|+.|+|||++.+.|..-+|-....+..+...... ++ ..|..|. -..-.+++.||++..
T Consensus 73 ~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~------~~f~~a~----l~gk~l~~~~E~~~~ 140 (304)
T TIGR01613 73 YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QE------HRFGLAR----LEGKRAVIGDEVQKG 140 (304)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cC------CCchhhh----hcCCEEEEecCCCCC
Confidence 55668899999999999999999998888655332222222111 11 0233332 334557888998743
No 499
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.75 E-value=0.0099 Score=58.02 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
+..|.|.||+|+|||++++.||+++|++++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4678999999999999999999999987753
No 500
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.75 E-value=0.012 Score=55.38 Aligned_cols=34 Identities=29% Similarity=0.583 Sum_probs=27.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 195 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l 195 (475)
|+|.|+||+|||++|+.++..+ |.+...++...+
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 7899999999999999999997 345555655443
Done!