Query 011914
Match_columns 475
No_of_seqs 390 out of 2943
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:53:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 1.3E-49 4.5E-54 397.9 26.1 293 124-416 1-293 (293)
2 4b4t_J 26S protease regulatory 100.0 4.2E-38 1.4E-42 327.0 21.2 207 155-402 178-390 (405)
3 4b4t_L 26S protease subunit RP 100.0 3.4E-37 1.2E-41 323.9 18.0 189 154-359 210-404 (437)
4 4b4t_I 26S protease regulatory 100.0 4E-37 1.4E-41 321.0 17.6 190 154-360 211-406 (437)
5 4b4t_H 26S protease regulatory 100.0 1.3E-36 4.5E-41 319.7 20.9 209 154-403 238-452 (467)
6 4b4t_M 26S protease regulatory 100.0 8.4E-37 2.9E-41 320.7 18.4 189 155-360 211-405 (434)
7 4b4t_K 26S protease regulatory 100.0 8.8E-36 3E-40 312.6 16.8 189 154-360 201-397 (428)
8 3cf2_A TER ATPase, transitiona 100.0 6.6E-36 2.3E-40 333.9 6.8 247 155-420 507-765 (806)
9 3cf2_A TER ATPase, transitiona 100.0 1.1E-31 3.9E-36 299.8 19.4 193 153-365 232-430 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.3E-28 1.1E-32 246.1 21.3 243 155-418 41-319 (322)
11 3eie_A Vacuolar protein sortin 100.0 5.2E-28 1.8E-32 243.9 20.6 244 155-419 47-319 (322)
12 3cf0_A Transitional endoplasmi 100.0 3.4E-28 1.2E-32 243.2 17.6 244 155-417 45-300 (301)
13 2qp9_X Vacuolar protein sortin 99.9 2.9E-27 9.8E-32 242.3 18.7 243 155-418 80-351 (355)
14 2x8a_A Nuclear valosin-contain 99.9 3.3E-27 1.1E-31 233.8 17.6 190 154-363 39-239 (274)
15 2zan_A Vacuolar protein sortin 99.9 2.3E-26 7.9E-31 242.4 17.9 188 156-364 164-359 (444)
16 2ce7_A Cell division protein F 99.9 2.7E-26 9.3E-31 243.9 15.9 184 154-356 44-235 (476)
17 3h4m_A Proteasome-activating n 99.9 1.3E-25 4.4E-30 220.6 17.4 186 155-357 47-238 (285)
18 2qz4_A Paraplegin; AAA+, SPG7, 99.9 8E-26 2.8E-30 218.6 14.3 174 155-344 35-219 (262)
19 1lv7_A FTSH; alpha/beta domain 99.9 5.8E-25 2E-29 213.6 18.7 174 155-344 41-222 (257)
20 3d8b_A Fidgetin-like protein 1 99.9 1.5E-24 5.1E-29 222.1 16.9 230 157-418 115-354 (357)
21 3hu3_A Transitional endoplasmi 99.9 1.8E-24 6E-29 230.9 17.6 188 155-362 234-427 (489)
22 3vfd_A Spastin; ATPase, microt 99.9 1.6E-24 5.6E-29 223.8 16.2 229 157-417 146-384 (389)
23 2dhr_A FTSH; AAA+ protein, hex 99.9 1.3E-24 4.4E-29 232.3 15.4 182 154-354 59-248 (499)
24 1ypw_A Transitional endoplasmi 99.9 1.2E-26 4.1E-31 261.1 -1.3 192 155-364 507-705 (806)
25 3b9p_A CG5977-PA, isoform A; A 99.9 5.6E-24 1.9E-28 210.4 17.4 230 157-417 52-291 (297)
26 1ixz_A ATP-dependent metallopr 99.9 2.1E-23 7.3E-28 202.2 15.1 181 155-354 45-233 (254)
27 2r62_A Cell division protease 99.9 6.6E-25 2.3E-29 214.0 1.2 175 155-344 40-223 (268)
28 1iy2_A ATP-dependent metallopr 99.9 2.6E-22 9E-27 197.6 16.0 174 155-344 69-250 (278)
29 3thg_A Ribulose bisphosphate c 99.9 7E-22 2.4E-26 165.6 11.0 103 308-410 5-107 (107)
30 1ypw_A Transitional endoplasmi 99.8 2.6E-20 9E-25 209.6 20.7 188 153-360 232-425 (806)
31 2c9o_A RUVB-like 1; hexameric 99.8 7.3E-22 2.5E-26 208.5 -2.7 155 155-321 59-239 (456)
32 1d2n_A N-ethylmaleimide-sensit 99.8 1.2E-18 4.3E-23 170.4 13.9 165 154-340 59-228 (272)
33 3syl_A Protein CBBX; photosynt 99.8 1.1E-17 3.7E-22 165.8 18.9 156 155-336 63-234 (309)
34 3m6a_A ATP-dependent protease 99.7 6.3E-17 2.2E-21 174.6 16.6 167 158-340 107-297 (543)
35 1ofh_A ATP-dependent HSL prote 99.7 4.4E-16 1.5E-20 153.3 13.1 157 157-319 48-213 (310)
36 1g41_A Heat shock protein HSLU 99.6 9.1E-17 3.1E-21 169.1 7.4 135 157-317 48-188 (444)
37 3uk6_A RUVB-like 2; hexameric 99.6 9E-15 3.1E-19 148.2 18.8 154 156-337 67-290 (368)
38 1jbk_A CLPB protein; beta barr 99.6 3.9E-16 1.3E-20 141.1 6.7 136 157-317 41-194 (195)
39 3hws_A ATP-dependent CLP prote 99.6 3.1E-16 1.1E-20 160.0 5.6 160 157-319 49-267 (363)
40 3pfi_A Holliday junction ATP-d 99.6 3.6E-14 1.2E-18 142.4 17.2 158 157-341 53-219 (338)
41 4fcw_A Chaperone protein CLPB; 99.6 6.1E-14 2.1E-18 138.6 16.4 182 159-364 47-285 (311)
42 3u61_B DNA polymerase accessor 99.5 6E-14 2.1E-18 140.1 16.1 148 157-338 46-205 (324)
43 3te6_A Regulatory protein SIR3 99.5 2.3E-14 7.7E-19 144.9 13.0 137 157-322 43-212 (318)
44 2p65_A Hypothetical protein PF 99.5 2.5E-14 8.5E-19 129.3 9.9 123 157-304 41-181 (187)
45 3pvs_A Replication-associated 99.5 8.5E-14 2.9E-18 146.8 15.5 144 160-340 51-206 (447)
46 1l8q_A Chromosomal replication 99.5 4.5E-14 1.5E-18 141.4 12.5 162 147-338 26-198 (324)
47 3pxg_A Negative regulator of g 99.5 5.7E-14 1.9E-18 148.8 13.9 143 158-341 200-367 (468)
48 1um8_A ATP-dependent CLP prote 99.5 7.3E-14 2.5E-18 143.0 12.8 104 157-260 70-176 (376)
49 3pxi_A Negative regulator of g 99.5 4.5E-13 1.5E-17 149.6 19.1 155 157-336 518-701 (758)
50 1hqc_A RUVB; extended AAA-ATPa 99.5 1.4E-13 4.8E-18 136.8 13.3 158 157-340 36-202 (324)
51 1r6b_X CLPA protein; AAA+, N-t 99.5 1.9E-13 6.4E-18 152.4 14.7 156 160-336 489-692 (758)
52 1r6b_X CLPA protein; AAA+, N-t 99.5 2.1E-13 7.1E-18 152.0 15.1 140 158-322 206-363 (758)
53 1qvr_A CLPB protein; coiled co 99.5 7.9E-14 2.7E-18 157.7 11.6 157 158-340 190-373 (854)
54 2chg_A Replication factor C sm 99.5 3.1E-12 1.1E-16 118.0 19.0 144 161-338 40-193 (226)
55 2z4s_A Chromosomal replication 99.4 2.1E-13 7.2E-18 143.4 11.5 165 147-342 120-299 (440)
56 3pxi_A Negative regulator of g 99.4 2E-13 6.7E-18 152.5 10.7 142 157-339 199-365 (758)
57 2qby_B CDC6 homolog 3, cell di 99.4 8.7E-13 3E-17 133.7 12.9 147 157-336 43-229 (384)
58 2v1u_A Cell division control p 99.4 1.2E-12 4.1E-17 132.1 13.2 153 157-335 42-232 (387)
59 1sxj_A Activator 1 95 kDa subu 99.4 2E-13 6.9E-18 146.1 7.3 155 158-340 76-243 (516)
60 1njg_A DNA polymerase III subu 99.4 2.6E-12 9E-17 119.6 14.0 148 157-338 43-217 (250)
61 1qvr_A CLPB protein; coiled co 99.4 5.2E-12 1.8E-16 142.9 15.7 183 160-364 589-826 (854)
62 2chq_A Replication factor C sm 99.4 4.3E-12 1.5E-16 125.0 13.0 147 162-343 41-197 (319)
63 1sxj_D Activator 1 41 kDa subu 99.3 2.5E-11 8.6E-16 121.6 15.5 145 161-339 60-225 (353)
64 1a5t_A Delta prime, HOLB; zinc 99.3 2.8E-11 9.5E-16 122.3 15.0 147 157-337 22-193 (334)
65 3bos_A Putative DNA replicatio 99.3 3.7E-11 1.2E-15 113.0 14.7 145 158-340 51-208 (242)
66 2qby_A CDC6 homolog 1, cell di 99.3 3.5E-11 1.2E-15 121.0 14.8 152 157-335 43-228 (386)
67 2r44_A Uncharacterized protein 99.3 1.4E-11 5E-16 123.3 11.7 142 160-323 47-200 (331)
68 1jr3_A DNA polymerase III subu 99.3 6.4E-11 2.2E-15 119.5 16.4 150 157-340 36-212 (373)
69 1iqp_A RFCS; clamp loader, ext 99.3 5.1E-11 1.8E-15 117.7 15.2 144 161-338 48-201 (327)
70 2bjv_A PSP operon transcriptio 99.3 1.1E-11 3.9E-16 120.2 9.5 154 159-336 29-219 (265)
71 1in4_A RUVB, holliday junction 99.3 1.3E-10 4.4E-15 117.4 17.4 158 157-341 49-215 (334)
72 1fnn_A CDC6P, cell division co 99.2 7E-11 2.4E-15 119.5 15.3 152 160-338 45-227 (389)
73 1sxj_B Activator 1 37 kDa subu 99.2 4.6E-11 1.6E-15 117.8 12.3 149 157-340 41-200 (323)
74 1sxj_E Activator 1 40 kDa subu 99.2 1.5E-10 5E-15 116.5 15.9 148 157-337 35-225 (354)
75 1g8p_A Magnesium-chelatase 38 99.2 4E-12 1.4E-16 127.4 3.3 146 160-321 46-232 (350)
76 3n70_A Transport activator; si 99.2 2.8E-11 9.5E-16 107.6 7.6 91 158-288 23-116 (145)
77 1ojl_A Transcriptional regulat 99.2 9.5E-11 3.3E-15 117.2 12.3 156 157-337 23-215 (304)
78 1sxj_C Activator 1 40 kDa subu 99.1 4E-10 1.4E-14 113.6 14.6 144 157-335 45-198 (340)
79 3co5_A Putative two-component 99.1 6.8E-12 2.3E-16 111.5 1.0 90 159-288 27-116 (143)
80 4akg_A Glutathione S-transfera 99.1 5.4E-11 1.9E-15 146.9 8.8 143 159-322 1267-1432(2695)
81 3nbx_X ATPase RAVA; AAA+ ATPas 99.1 4.4E-11 1.5E-15 127.8 6.9 139 160-321 42-196 (500)
82 3f9v_A Minichromosome maintena 99.1 1.5E-11 5.1E-16 134.1 2.5 138 161-323 329-492 (595)
83 2gno_A DNA polymerase III, gam 99.1 5.5E-10 1.9E-14 112.0 12.6 129 159-321 18-152 (305)
84 3ec2_A DNA replication protein 99.0 1.2E-09 4.1E-14 99.8 11.7 85 142-234 21-112 (180)
85 3cmw_A Protein RECA, recombina 98.9 9.3E-10 3.2E-14 131.1 9.2 115 158-289 1081-1219(1706)
86 2w58_A DNAI, primosome compone 98.9 1.6E-08 5.5E-13 93.7 12.8 72 158-235 53-128 (202)
87 2vhj_A Ntpase P4, P4; non- hyd 98.9 2.5E-09 8.4E-14 108.1 6.9 122 155-295 119-242 (331)
88 1w5s_A Origin recognition comp 98.8 2.5E-08 8.4E-13 101.7 12.5 159 158-338 49-249 (412)
89 2kjq_A DNAA-related protein; s 98.8 1.1E-08 3.7E-13 91.8 7.2 59 158-235 35-96 (149)
90 2qgz_A Helicase loader, putati 98.7 7.9E-09 2.7E-13 103.5 5.2 83 146-234 139-226 (308)
91 2r2a_A Uncharacterized protein 98.7 3E-08 1E-12 93.5 7.9 126 158-307 4-150 (199)
92 1tue_A Replication protein E1; 98.6 4.1E-08 1.4E-12 93.2 7.3 127 145-306 46-176 (212)
93 1svm_A Large T antigen; AAA+ f 98.6 1.6E-07 5.6E-12 96.8 9.9 118 155-309 165-284 (377)
94 3k1j_A LON protease, ATP-depen 98.5 9.3E-07 3.2E-11 96.2 13.3 102 221-338 200-327 (604)
95 4akg_A Glutathione S-transfera 98.4 9.1E-07 3.1E-11 109.8 12.6 140 159-317 645-789 (2695)
96 2qen_A Walker-type ATPase; unk 98.4 3E-06 1E-10 83.8 13.4 155 160-338 32-235 (350)
97 3cmu_A Protein RECA, recombina 98.4 9E-07 3.1E-11 107.0 10.6 79 155-237 1423-1520(2050)
98 2fna_A Conserved hypothetical 98.3 7.9E-06 2.7E-10 80.8 15.2 35 160-194 31-65 (357)
99 1u0j_A DNA replication protein 98.3 2.9E-06 9.8E-11 83.5 10.6 42 143-185 89-130 (267)
100 3vkg_A Dynein heavy chain, cyt 98.2 7.2E-07 2.5E-11 111.6 6.2 141 160-321 1305-1469(3245)
101 2cvh_A DNA repair and recombin 98.1 8E-06 2.7E-10 75.7 9.2 40 155-194 16-55 (220)
102 1ny5_A Transcriptional regulat 98.1 1.8E-05 6.2E-10 81.4 11.9 108 160-288 161-282 (387)
103 3dzd_A Transcriptional regulat 98.1 1E-05 3.5E-10 82.8 9.9 154 160-337 153-341 (368)
104 1ye8_A Protein THEP1, hypothet 98.0 1.1E-05 3.6E-10 74.4 8.6 27 161-187 2-28 (178)
105 1n0w_A DNA repair protein RAD5 97.9 2.5E-05 8.5E-10 73.5 8.6 84 154-237 19-134 (243)
106 3f8t_A Predicted ATPase involv 97.8 9.2E-06 3.2E-10 85.8 4.5 126 160-313 240-386 (506)
107 3vkg_A Dynein heavy chain, cyt 97.8 7.7E-05 2.6E-09 93.8 13.1 139 160-317 605-749 (3245)
108 3cmu_A Protein RECA, recombina 97.8 3.2E-05 1.1E-09 93.7 9.5 82 155-236 728-824 (2050)
109 1qhx_A CPT, protein (chloramph 97.8 3E-05 1E-09 69.7 6.4 34 159-192 3-36 (178)
110 2w0m_A SSO2452; RECA, SSPF, un 97.8 7.9E-05 2.7E-09 69.1 9.4 37 155-191 19-58 (235)
111 3hr8_A Protein RECA; alpha and 97.8 6.3E-05 2.2E-09 76.9 9.3 83 154-236 56-153 (356)
112 1jr3_D DNA polymerase III, del 97.8 0.00029 9.8E-09 70.5 13.8 147 157-340 16-176 (343)
113 2zr9_A Protein RECA, recombina 97.7 4.2E-05 1.4E-09 77.9 7.2 83 154-236 56-153 (349)
114 2ehv_A Hypothetical protein PH 97.7 0.0002 6.8E-09 67.4 10.6 26 155-180 26-51 (251)
115 1xp8_A RECA protein, recombina 97.7 0.00017 5.9E-09 73.9 10.9 84 154-237 69-167 (366)
116 2z43_A DNA repair and recombin 97.6 7E-05 2.4E-09 75.0 7.1 83 154-236 102-217 (324)
117 1u94_A RECA protein, recombina 97.6 8.7E-05 3E-09 75.8 7.7 83 154-236 58-155 (356)
118 1v5w_A DMC1, meiotic recombina 97.6 7.1E-05 2.4E-09 75.7 6.8 83 154-236 117-233 (343)
119 3cmw_A Protein RECA, recombina 97.6 0.0001 3.6E-09 88.3 8.4 82 155-236 728-824 (1706)
120 2rhm_A Putative kinase; P-loop 97.6 7.1E-05 2.4E-09 67.9 5.5 34 156-189 2-35 (193)
121 4a74_A DNA repair and recombin 97.6 0.00021 7.2E-09 66.4 8.8 29 155-183 21-49 (231)
122 3trf_A Shikimate kinase, SK; a 97.5 4.7E-05 1.6E-09 68.9 4.2 33 159-191 5-37 (185)
123 2dr3_A UPF0273 protein PH0284; 97.5 0.00054 1.8E-08 64.3 11.5 38 155-192 19-59 (247)
124 1pzn_A RAD51, DNA repair and r 97.5 0.00035 1.2E-08 71.0 10.7 82 155-236 127-245 (349)
125 2p5t_B PEZT; postsegregational 97.5 0.00038 1.3E-08 66.9 10.5 41 155-195 28-68 (253)
126 1gvn_B Zeta; postsegregational 97.5 0.00016 5.4E-09 71.4 7.6 60 137-196 10-70 (287)
127 3kw6_A 26S protease regulatory 97.5 0.00018 6.3E-09 57.0 6.3 70 307-403 2-75 (78)
128 1g5t_A COB(I)alamin adenosyltr 97.5 0.00026 8.9E-09 66.5 8.2 117 161-305 30-175 (196)
129 3io5_A Recombination and repai 97.5 0.00018 6.3E-09 72.5 7.6 82 155-237 25-126 (333)
130 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00032 1.1E-08 67.9 8.5 70 158-230 3-79 (260)
131 3lda_A DNA repair protein RAD5 97.4 0.0004 1.4E-08 72.0 9.7 83 155-237 174-288 (400)
132 2zts_A Putative uncharacterize 97.4 0.00034 1.2E-08 65.7 8.5 38 155-192 26-67 (251)
133 3vaa_A Shikimate kinase, SK; s 97.4 8.9E-05 3E-09 68.5 4.3 35 157-191 23-57 (199)
134 3iij_A Coilin-interacting nucl 97.4 9E-05 3.1E-09 67.0 4.2 34 157-190 9-42 (180)
135 3umf_A Adenylate kinase; rossm 97.4 0.00012 4.1E-09 69.7 5.2 40 154-195 24-63 (217)
136 2orw_A Thymidine kinase; TMTK, 97.4 7.7E-05 2.6E-09 68.9 3.5 31 160-190 4-37 (184)
137 2r6a_A DNAB helicase, replicat 97.4 0.00049 1.7E-08 72.1 10.0 38 155-192 199-240 (454)
138 2b8t_A Thymidine kinase; deoxy 97.4 0.00054 1.8E-08 65.5 9.2 74 160-234 13-101 (223)
139 2cdn_A Adenylate kinase; phosp 97.4 0.00013 4.4E-09 67.2 4.7 35 156-190 17-51 (201)
140 1tev_A UMP-CMP kinase; ploop, 97.3 0.00011 3.9E-09 66.3 4.0 31 159-189 3-33 (196)
141 2q6t_A DNAB replication FORK h 97.3 0.0008 2.7E-08 70.3 11.0 39 154-192 195-237 (444)
142 2c95_A Adenylate kinase 1; tra 97.3 0.00013 4.5E-09 66.3 4.1 33 158-190 8-40 (196)
143 3kb2_A SPBC2 prophage-derived 97.3 0.00016 5.6E-09 64.0 4.6 32 160-191 2-33 (173)
144 2iyv_A Shikimate kinase, SK; t 97.3 0.00012 4E-09 66.3 3.6 31 160-190 3-33 (184)
145 1qf9_A UMP/CMP kinase, protein 97.3 0.00019 6.6E-09 64.7 4.6 33 158-190 5-37 (194)
146 1y63_A LMAJ004144AAA protein; 97.3 0.00014 4.9E-09 66.3 3.8 33 158-190 9-42 (184)
147 1aky_A Adenylate kinase; ATP:A 97.3 0.00016 5.3E-09 67.7 4.1 34 157-190 2-35 (220)
148 1zuh_A Shikimate kinase; alpha 97.3 0.00016 5.5E-09 64.5 3.9 31 160-190 8-38 (168)
149 2i1q_A DNA repair and recombin 97.3 0.00051 1.7E-08 68.3 8.0 83 154-236 93-218 (322)
150 1kag_A SKI, shikimate kinase I 97.2 0.00022 7.4E-09 63.7 4.3 30 159-188 4-33 (173)
151 1ukz_A Uridylate kinase; trans 97.2 0.0002 6.7E-09 65.9 4.2 34 157-190 13-46 (203)
152 2bwj_A Adenylate kinase 5; pho 97.2 0.00018 6.3E-09 65.4 3.8 32 158-189 11-42 (199)
153 1via_A Shikimate kinase; struc 97.2 0.00017 5.7E-09 64.9 3.5 29 161-189 6-34 (175)
154 3lw7_A Adenylate kinase relate 97.2 0.00018 6.3E-09 63.3 3.6 30 160-190 2-31 (179)
155 1ly1_A Polynucleotide kinase; 97.2 0.00017 5.6E-09 64.5 3.3 29 159-187 2-31 (181)
156 3t61_A Gluconokinase; PSI-biol 97.2 0.00022 7.6E-09 65.6 4.2 32 158-189 17-48 (202)
157 3cm0_A Adenylate kinase; ATP-b 97.2 0.00023 7.9E-09 64.3 4.1 30 159-188 4-33 (186)
158 1zd8_A GTP:AMP phosphotransfer 97.2 0.00019 6.5E-09 67.5 3.7 33 157-189 5-37 (227)
159 2vli_A Antibiotic resistance p 97.2 0.00018 6.1E-09 64.7 3.3 31 158-188 4-34 (183)
160 1zp6_A Hypothetical protein AT 97.1 0.00024 8.1E-09 64.5 3.8 38 156-193 6-43 (191)
161 3tlx_A Adenylate kinase 2; str 97.1 0.00026 8.8E-09 67.9 4.3 34 157-190 27-60 (243)
162 1cr0_A DNA primase/helicase; R 97.1 0.0011 3.7E-08 64.9 8.7 37 155-191 31-71 (296)
163 1kht_A Adenylate kinase; phosp 97.1 0.00021 7E-09 64.5 3.2 26 159-184 3-28 (192)
164 1e6c_A Shikimate kinase; phosp 97.1 0.00023 7.8E-09 63.4 3.5 30 160-189 3-32 (173)
165 3be4_A Adenylate kinase; malar 97.1 0.00023 8E-09 66.6 3.5 32 159-190 5-36 (217)
166 1z6t_A APAF-1, apoptotic prote 97.1 0.0028 9.4E-08 67.8 12.1 25 157-181 145-169 (591)
167 1nlf_A Regulatory protein REPA 97.1 0.0024 8.4E-08 61.9 10.7 28 155-182 26-53 (279)
168 1ak2_A Adenylate kinase isoenz 97.1 0.00032 1.1E-08 66.4 4.2 34 157-190 14-47 (233)
169 2krk_A 26S protease regulatory 97.1 0.00034 1.2E-08 56.9 3.8 51 307-360 10-64 (86)
170 2a5y_B CED-4; apoptosis; HET: 97.1 0.0059 2E-07 65.2 14.4 25 157-181 150-174 (549)
171 2ze6_A Isopentenyl transferase 97.1 0.0004 1.4E-08 67.1 4.7 33 160-192 2-34 (253)
172 1g41_A Heat shock protein HSLU 97.1 0.0044 1.5E-07 65.1 12.9 89 223-318 251-346 (444)
173 2pt5_A Shikimate kinase, SK; a 97.0 0.00041 1.4E-08 61.5 4.0 30 161-190 2-31 (168)
174 1knq_A Gluconate kinase; ALFA/ 97.0 0.00059 2E-08 61.1 4.9 31 158-188 7-37 (175)
175 1zak_A Adenylate kinase; ATP:A 97.0 0.00036 1.2E-08 65.3 3.6 31 158-188 4-34 (222)
176 3dl0_A Adenylate kinase; phosp 97.0 0.00036 1.2E-08 64.8 3.6 30 161-190 2-31 (216)
177 4eun_A Thermoresistant glucoki 97.0 0.00054 1.9E-08 63.2 4.8 37 157-195 27-63 (200)
178 3fb4_A Adenylate kinase; psych 97.0 0.00038 1.3E-08 64.5 3.8 30 161-190 2-31 (216)
179 3sfz_A APAF-1, apoptotic pepti 97.0 0.0045 1.5E-07 71.1 13.1 26 157-182 145-170 (1249)
180 3bh0_A DNAB-like replicative h 97.0 0.0022 7.5E-08 63.9 9.1 39 154-192 63-104 (315)
181 3sr0_A Adenylate kinase; phosp 96.9 0.00058 2E-08 64.3 4.5 33 161-195 2-34 (206)
182 2pez_A Bifunctional 3'-phospho 96.9 0.00085 2.9E-08 60.5 5.5 37 157-193 3-42 (179)
183 2v54_A DTMP kinase, thymidylat 96.9 0.00067 2.3E-08 62.0 4.3 34 158-191 3-37 (204)
184 2pbr_A DTMP kinase, thymidylat 96.9 0.00091 3.1E-08 60.3 5.1 31 161-191 2-35 (195)
185 3uie_A Adenylyl-sulfate kinase 96.9 0.0023 8E-08 58.8 8.0 38 157-194 23-63 (200)
186 1cke_A CK, MSSA, protein (cyti 96.9 0.00084 2.9E-08 62.5 4.9 30 159-188 5-34 (227)
187 1vma_A Cell division protein F 96.8 0.0067 2.3E-07 60.5 11.6 72 157-232 102-196 (306)
188 2yvu_A Probable adenylyl-sulfa 96.8 0.0036 1.2E-07 56.6 8.8 37 157-193 11-50 (186)
189 1e4v_A Adenylate kinase; trans 96.8 0.00062 2.1E-08 63.4 3.7 30 161-190 2-31 (214)
190 2z0h_A DTMP kinase, thymidylat 96.8 0.0017 5.7E-08 58.9 6.6 32 161-192 2-36 (197)
191 1uf9_A TT1252 protein; P-loop, 96.8 0.0007 2.4E-08 61.7 3.9 33 157-190 6-38 (203)
192 3dm5_A SRP54, signal recogniti 96.8 0.0076 2.6E-07 63.2 12.1 71 158-232 99-192 (443)
193 2bbw_A Adenylate kinase 4, AK4 96.8 0.001 3.5E-08 63.3 4.9 31 158-188 26-56 (246)
194 1q57_A DNA primase/helicase; d 96.8 0.0059 2E-07 64.6 11.2 38 155-192 238-279 (503)
195 2iut_A DNA translocase FTSK; n 96.8 0.011 3.7E-07 63.9 13.2 72 224-318 345-420 (574)
196 3bgw_A DNAB-like replicative h 96.8 0.0041 1.4E-07 65.1 9.7 38 155-192 193-233 (444)
197 1nks_A Adenylate kinase; therm 96.8 0.00065 2.2E-08 61.2 3.1 32 160-191 2-36 (194)
198 2wwf_A Thymidilate kinase, put 96.7 0.00053 1.8E-08 63.1 2.5 31 157-187 8-38 (212)
199 1jjv_A Dephospho-COA kinase; P 96.7 0.001 3.4E-08 61.3 4.3 29 160-189 3-31 (206)
200 2plr_A DTMP kinase, probable t 96.7 0.0011 3.6E-08 60.8 4.4 28 159-186 4-31 (213)
201 2jaq_A Deoxyguanosine kinase; 96.7 0.001 3.6E-08 60.4 4.3 28 161-188 2-29 (205)
202 3r20_A Cytidylate kinase; stru 96.7 0.0011 3.8E-08 63.7 4.6 33 157-189 7-39 (233)
203 1nn5_A Similar to deoxythymidy 96.7 0.00061 2.1E-08 62.7 2.7 29 157-185 7-35 (215)
204 2if2_A Dephospho-COA kinase; a 96.7 0.00084 2.9E-08 61.6 3.5 30 161-191 3-32 (204)
205 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00079 2.7E-08 68.7 3.5 30 160-189 25-54 (359)
206 3ake_A Cytidylate kinase; CMP 96.7 0.0014 4.8E-08 59.9 4.8 30 161-190 4-33 (208)
207 1uj2_A Uridine-cytidine kinase 96.7 0.0016 5.4E-08 62.4 5.3 40 157-196 20-67 (252)
208 3crm_A TRNA delta(2)-isopenten 96.7 0.0013 4.3E-08 66.4 4.8 36 158-193 4-39 (323)
209 2xb4_A Adenylate kinase; ATP-b 96.6 0.0013 4.4E-08 61.9 4.5 29 161-189 2-30 (223)
210 3tau_A Guanylate kinase, GMP k 96.6 0.0015 5.2E-08 60.7 4.9 28 157-184 6-33 (208)
211 1m7g_A Adenylylsulfate kinase; 96.6 0.0032 1.1E-07 58.4 6.9 39 157-195 23-65 (211)
212 2qt1_A Nicotinamide riboside k 96.6 0.001 3.4E-08 61.4 3.4 35 155-189 17-52 (207)
213 2fz4_A DNA repair protein RAD2 96.6 0.0046 1.6E-07 58.9 8.1 33 161-193 110-142 (237)
214 3vlf_B 26S protease regulatory 96.6 0.0024 8.4E-08 51.8 5.2 49 309-360 2-54 (88)
215 1vht_A Dephospho-COA kinase; s 96.6 0.0017 6E-08 60.3 4.9 32 158-190 3-34 (218)
216 4a1f_A DNAB helicase, replicat 96.6 0.0022 7.4E-08 65.1 5.7 38 155-192 42-82 (338)
217 1rz3_A Hypothetical protein rb 96.5 0.0041 1.4E-07 57.4 7.1 50 138-192 6-58 (201)
218 2r8r_A Sensor protein; KDPD, P 96.5 0.009 3.1E-07 57.2 9.5 34 159-192 6-42 (228)
219 3zvl_A Bifunctional polynucleo 96.5 0.0015 5.3E-08 67.6 4.2 37 157-195 256-292 (416)
220 3jvv_A Twitching mobility prot 96.5 0.0025 8.5E-08 65.0 5.7 69 160-232 124-206 (356)
221 2grj_A Dephospho-COA kinase; T 96.5 0.0017 5.7E-08 60.4 3.9 32 159-190 12-43 (192)
222 4gp7_A Metallophosphoesterase; 96.5 0.0021 7.1E-08 58.0 4.4 22 157-178 7-28 (171)
223 2f6r_A COA synthase, bifunctio 96.5 0.0017 5.7E-08 63.7 4.1 33 157-190 73-105 (281)
224 2h92_A Cytidylate kinase; ross 96.5 0.0019 6.4E-08 60.0 4.2 32 159-190 3-34 (219)
225 2axn_A 6-phosphofructo-2-kinas 96.5 0.0031 1.1E-07 67.4 6.4 36 157-192 33-71 (520)
226 1q3t_A Cytidylate kinase; nucl 96.4 0.0025 8.5E-08 60.3 5.0 34 156-189 13-46 (236)
227 4e22_A Cytidylate kinase; P-lo 96.4 0.0026 8.8E-08 61.2 4.8 31 158-188 26-56 (252)
228 2eyu_A Twitching motility prot 96.4 0.0035 1.2E-07 61.0 5.7 27 157-183 23-49 (261)
229 1ltq_A Polynucleotide kinase; 96.3 0.0021 7.3E-08 62.6 3.9 30 159-188 2-32 (301)
230 3a8t_A Adenylate isopentenyltr 96.3 0.0074 2.5E-07 61.1 7.8 36 157-192 38-73 (339)
231 3nwj_A ATSK2; P loop, shikimat 96.3 0.0026 9E-08 61.6 4.3 32 159-190 48-79 (250)
232 3ney_A 55 kDa erythrocyte memb 96.3 0.0035 1.2E-07 58.7 5.0 27 158-184 18-44 (197)
233 3kl4_A SRP54, signal recogniti 96.3 0.016 5.3E-07 60.7 10.3 35 158-192 96-133 (433)
234 2qor_A Guanylate kinase; phosp 96.3 0.0026 9E-08 58.7 3.9 29 156-184 9-37 (204)
235 2j41_A Guanylate kinase; GMP, 96.2 0.0028 9.4E-08 57.9 4.0 27 157-183 4-30 (207)
236 2c9o_A RUVB-like 1; hexameric 96.2 0.016 5.4E-07 60.5 10.0 85 223-335 296-395 (456)
237 3c8u_A Fructokinase; YP_612366 96.1 0.0058 2E-07 56.6 5.7 29 156-184 19-47 (208)
238 3asz_A Uridine kinase; cytidin 96.1 0.0031 1E-07 58.1 3.7 28 157-184 4-31 (211)
239 3foz_A TRNA delta(2)-isopenten 96.1 0.0046 1.6E-07 62.0 5.1 36 157-192 8-43 (316)
240 2ewv_A Twitching motility prot 96.1 0.0048 1.6E-07 63.1 5.0 27 157-183 134-160 (372)
241 2j37_W Signal recognition part 96.0 0.034 1.2E-06 59.2 11.6 36 157-192 99-137 (504)
242 3tqc_A Pantothenate kinase; bi 96.0 0.0092 3.2E-07 59.9 6.6 39 146-184 79-117 (321)
243 1kgd_A CASK, peripheral plasma 96.0 0.0048 1.6E-07 55.9 4.1 26 159-184 5-30 (180)
244 3fdi_A Uncharacterized protein 95.9 0.0056 1.9E-07 57.0 4.6 30 160-189 7-36 (201)
245 1x6v_B Bifunctional 3'-phospho 95.9 0.014 4.7E-07 63.9 8.1 38 158-195 51-91 (630)
246 3gmt_A Adenylate kinase; ssgci 95.9 0.0052 1.8E-07 59.0 4.2 29 160-188 9-37 (230)
247 1xx6_A Thymidine kinase; NESG, 95.9 0.011 3.9E-07 54.8 6.4 33 159-191 8-43 (191)
248 1sq5_A Pantothenate kinase; P- 95.9 0.0077 2.6E-07 59.7 5.5 38 147-184 68-105 (308)
249 3tr0_A Guanylate kinase, GMP k 95.9 0.0055 1.9E-07 55.8 4.1 27 158-184 6-32 (205)
250 2bdt_A BH3686; alpha-beta prot 95.9 0.0062 2.1E-07 55.1 4.4 25 160-184 3-27 (189)
251 3d3q_A TRNA delta(2)-isopenten 95.9 0.0052 1.8E-07 62.3 4.2 33 159-191 7-39 (340)
252 2ius_A DNA translocase FTSK; n 95.8 0.058 2E-06 57.5 12.1 72 224-318 299-374 (512)
253 3e1s_A Exodeoxyribonuclease V, 95.7 0.0095 3.3E-07 64.4 5.9 34 159-192 204-240 (574)
254 1m8p_A Sulfate adenylyltransfe 95.7 0.025 8.5E-07 61.1 9.0 38 157-194 394-435 (573)
255 2xxa_A Signal recognition part 95.7 0.064 2.2E-06 56.0 11.6 37 157-193 98-138 (433)
256 2gks_A Bifunctional SAT/APS ki 95.7 0.017 5.7E-07 62.1 7.4 61 133-194 347-410 (546)
257 3a00_A Guanylate kinase, GMP k 95.6 0.0059 2E-07 55.5 3.3 26 159-184 1-26 (186)
258 1odf_A YGR205W, hypothetical 3 95.6 0.014 4.9E-07 57.5 6.3 29 156-184 28-56 (290)
259 1w4r_A Thymidine kinase; type 95.6 0.04 1.4E-06 51.5 9.0 36 158-193 19-57 (195)
260 1tf7_A KAIC; homohexamer, hexa 95.6 0.053 1.8E-06 57.6 11.2 25 155-179 35-59 (525)
261 3exa_A TRNA delta(2)-isopenten 95.6 0.0068 2.3E-07 60.9 3.7 33 159-191 3-35 (322)
262 2jeo_A Uridine-cytidine kinase 95.6 0.009 3.1E-07 56.8 4.4 31 156-186 22-52 (245)
263 3ice_A Transcription terminati 95.5 0.027 9.3E-07 58.2 8.0 77 159-235 174-274 (422)
264 3hdt_A Putative kinase; struct 95.5 0.011 3.8E-07 56.2 4.8 31 159-189 14-44 (223)
265 4eaq_A DTMP kinase, thymidylat 95.5 0.011 3.7E-07 56.1 4.5 33 157-189 24-58 (229)
266 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.019 6.6E-07 57.6 6.5 67 160-233 172-251 (330)
267 1g8f_A Sulfate adenylyltransfe 95.4 0.012 4E-07 62.8 5.1 54 131-185 368-421 (511)
268 3eph_A TRNA isopentenyltransfe 95.4 0.012 4.2E-07 60.9 5.0 33 159-191 2-34 (409)
269 3e70_C DPA, signal recognition 95.4 0.094 3.2E-06 52.6 11.3 27 157-183 127-153 (328)
270 1gtv_A TMK, thymidylate kinase 95.3 0.0056 1.9E-07 56.2 1.9 24 161-184 2-25 (214)
271 1tf7_A KAIC; homohexamer, hexa 95.3 0.058 2E-06 57.3 10.0 38 155-192 277-317 (525)
272 3aji_B S6C, proteasome (prosom 95.3 0.0046 1.6E-07 49.3 1.1 48 309-359 2-53 (83)
273 1ls1_A Signal recognition part 95.2 0.054 1.8E-06 53.4 8.9 35 158-192 97-134 (295)
274 1j8m_F SRP54, signal recogniti 95.2 0.11 3.9E-06 51.2 11.3 35 159-193 98-135 (297)
275 3thx_B DNA mismatch repair pro 95.2 0.081 2.8E-06 60.2 11.2 24 158-181 672-695 (918)
276 1a7j_A Phosphoribulokinase; tr 95.2 0.0079 2.7E-07 59.3 2.6 39 158-196 4-45 (290)
277 1lvg_A Guanylate kinase, GMP k 95.1 0.011 3.6E-07 54.6 3.3 27 158-184 3-29 (198)
278 1bif_A 6-phosphofructo-2-kinas 95.1 0.027 9.2E-07 59.0 6.6 29 157-185 37-65 (469)
279 2ocp_A DGK, deoxyguanosine kin 95.1 0.016 5.6E-07 54.7 4.4 26 159-184 2-27 (241)
280 1znw_A Guanylate kinase, GMP k 95.1 0.014 4.8E-07 53.9 3.8 29 156-184 17-45 (207)
281 1zu4_A FTSY; GTPase, signal re 95.0 0.097 3.3E-06 52.3 10.2 37 156-192 102-141 (320)
282 1ex7_A Guanylate kinase; subst 95.0 0.021 7.1E-07 52.8 4.9 26 162-187 4-29 (186)
283 2j9r_A Thymidine kinase; TK1, 95.0 0.034 1.1E-06 52.7 6.3 34 159-192 28-64 (214)
284 3b9q_A Chloroplast SRP recepto 94.9 0.037 1.2E-06 54.9 6.7 28 156-183 97-124 (302)
285 1sky_E F1-ATPase, F1-ATP synth 94.9 0.019 6.5E-07 60.6 4.8 24 160-183 152-175 (473)
286 1z6g_A Guanylate kinase; struc 94.9 0.014 4.7E-07 54.8 3.4 28 156-183 20-47 (218)
287 3p32_A Probable GTPase RV1496/ 94.8 0.095 3.2E-06 52.8 9.5 35 157-191 77-114 (355)
288 3aez_A Pantothenate kinase; tr 94.8 0.021 7.2E-07 56.9 4.5 29 156-184 87-115 (312)
289 3b6e_A Interferon-induced heli 94.8 0.052 1.8E-06 49.3 6.8 24 160-183 49-72 (216)
290 1p5z_B DCK, deoxycytidine kina 94.7 0.0081 2.8E-07 57.7 1.2 28 156-183 21-48 (263)
291 2qmh_A HPR kinase/phosphorylas 94.7 0.014 4.7E-07 55.0 2.7 30 159-189 34-63 (205)
292 1htw_A HI0065; nucleotide-bind 94.7 0.025 8.5E-07 50.8 4.3 28 156-183 30-57 (158)
293 2og2_A Putative signal recogni 94.6 0.051 1.7E-06 55.3 6.8 28 156-183 154-181 (359)
294 3lnc_A Guanylate kinase, GMP k 94.5 0.011 3.8E-07 55.4 1.7 27 157-183 25-52 (231)
295 1wb9_A DNA mismatch repair pro 94.5 0.16 5.4E-06 57.1 11.2 24 159-182 607-630 (800)
296 3tmk_A Thymidylate kinase; pho 94.5 0.07 2.4E-06 50.4 7.2 33 158-190 4-36 (216)
297 3lxw_A GTPase IMAP family memb 94.5 0.044 1.5E-06 52.3 5.8 25 158-182 20-44 (247)
298 1c9k_A COBU, adenosylcobinamid 94.5 0.022 7.6E-07 52.5 3.6 32 162-194 2-33 (180)
299 3v9p_A DTMP kinase, thymidylat 94.5 0.056 1.9E-06 51.5 6.4 34 158-191 24-64 (227)
300 3thx_A DNA mismatch repair pro 94.4 0.17 5.7E-06 57.8 11.3 22 160-181 663-684 (934)
301 1vt4_I APAF-1 related killer D 94.4 0.097 3.3E-06 60.5 9.1 24 159-182 150-173 (1221)
302 2v9p_A Replication protein E1; 94.3 0.028 9.4E-07 56.1 4.1 28 156-183 123-150 (305)
303 4i1u_A Dephospho-COA kinase; s 94.3 0.025 8.6E-07 53.4 3.6 32 159-191 9-40 (210)
304 1s96_A Guanylate kinase, GMP k 94.2 0.03 1E-06 52.8 4.0 28 157-184 14-41 (219)
305 4b3f_X DNA-binding protein smu 94.2 0.023 7.8E-07 62.0 3.5 33 161-193 207-242 (646)
306 1np6_A Molybdopterin-guanine d 94.0 0.039 1.3E-06 50.4 4.0 26 158-183 5-30 (174)
307 1xjc_A MOBB protein homolog; s 94.0 0.037 1.3E-06 50.4 3.9 33 159-191 4-39 (169)
308 1p9r_A General secretion pathw 94.0 0.055 1.9E-06 56.2 5.6 25 160-184 168-192 (418)
309 1rj9_A FTSY, signal recognitio 93.9 0.041 1.4E-06 54.6 4.5 26 158-183 101-126 (304)
310 2i3b_A HCR-ntpase, human cance 93.9 0.033 1.1E-06 51.4 3.4 23 161-183 3-25 (189)
311 2oap_1 GSPE-2, type II secreti 93.9 0.035 1.2E-06 59.2 4.1 70 159-232 260-343 (511)
312 4edh_A DTMP kinase, thymidylat 93.9 0.041 1.4E-06 51.7 4.1 34 158-191 5-41 (213)
313 2px0_A Flagellar biosynthesis 93.9 0.085 2.9E-06 52.1 6.6 37 157-193 103-143 (296)
314 3upu_A ATP-dependent DNA helic 93.8 0.033 1.1E-06 58.1 3.7 23 161-183 47-69 (459)
315 2yhs_A FTSY, cell division pro 93.8 0.087 3E-06 56.0 6.8 28 156-183 290-317 (503)
316 2ffh_A Protein (FFH); SRP54, s 93.7 0.2 6.8E-06 52.1 9.4 35 158-192 97-134 (425)
317 3kta_A Chromosome segregation 93.7 0.044 1.5E-06 48.9 3.9 25 160-184 27-51 (182)
318 2dzn_B 26S protease regulatory 93.6 0.0093 3.2E-07 47.6 -0.7 47 311-360 1-51 (82)
319 3vkw_A Replicase large subunit 93.4 0.17 5.7E-06 53.0 8.1 34 157-192 159-192 (446)
320 3ch4_B Pmkase, phosphomevalona 93.4 0.081 2.8E-06 49.6 5.2 38 156-193 8-46 (202)
321 4f4c_A Multidrug resistance pr 93.3 0.29 9.8E-06 57.9 11.0 29 156-184 441-469 (1321)
322 3lv8_A DTMP kinase, thymidylat 93.3 0.055 1.9E-06 51.8 4.0 26 158-183 26-51 (236)
323 3l0o_A Transcription terminati 93.3 0.23 7.7E-06 51.4 8.7 75 161-235 177-275 (427)
324 2p67_A LAO/AO transport system 93.1 0.3 1E-05 48.9 9.2 27 157-183 54-80 (341)
325 1ewq_A DNA mismatch repair pro 93.0 0.19 6.4E-06 56.2 8.2 23 160-182 577-599 (765)
326 3cr8_A Sulfate adenylyltranfer 93.0 0.072 2.5E-06 57.3 4.7 29 156-184 366-394 (552)
327 3ld9_A DTMP kinase, thymidylat 93.0 0.073 2.5E-06 50.5 4.3 33 157-189 19-55 (223)
328 2onk_A Molybdate/tungstate ABC 93.0 0.05 1.7E-06 52.1 3.2 27 156-183 22-48 (240)
329 2cbz_A Multidrug resistance-as 92.8 0.049 1.7E-06 51.9 2.9 27 157-183 29-55 (237)
330 2v3c_C SRP54, signal recogniti 92.8 0.085 2.9E-06 55.0 4.8 36 158-193 98-136 (432)
331 1nrj_B SR-beta, signal recogni 92.8 0.074 2.5E-06 48.6 4.0 26 158-183 11-36 (218)
332 2pcj_A ABC transporter, lipopr 92.8 0.042 1.4E-06 51.9 2.3 27 157-183 28-54 (224)
333 3tif_A Uncharacterized ABC tra 92.7 0.052 1.8E-06 51.6 2.9 27 157-183 29-55 (235)
334 3k53_A Ferrous iron transport 92.7 0.19 6.7E-06 48.1 6.9 23 160-182 4-26 (271)
335 1z2a_A RAS-related protein RAB 92.7 0.069 2.4E-06 46.0 3.4 24 159-182 5-28 (168)
336 2f9l_A RAB11B, member RAS onco 92.6 0.064 2.2E-06 48.5 3.2 23 160-182 6-28 (199)
337 2gk6_A Regulator of nonsense t 92.6 0.063 2.1E-06 58.4 3.7 23 161-183 197-219 (624)
338 1oix_A RAS-related protein RAB 92.6 0.065 2.2E-06 48.4 3.2 24 160-183 30-53 (191)
339 1yrb_A ATP(GTP)binding protein 92.5 0.16 5.5E-06 47.8 6.0 36 157-192 12-49 (262)
340 1b0u_A Histidine permease; ABC 92.5 0.058 2E-06 52.2 2.8 28 157-184 30-57 (262)
341 3b85_A Phosphate starvation-in 92.4 0.052 1.8E-06 50.8 2.4 24 159-182 22-45 (208)
342 3tqf_A HPR(Ser) kinase; transf 92.4 0.079 2.7E-06 48.8 3.5 27 159-186 16-42 (181)
343 4tmk_A Protein (thymidylate ki 92.4 0.089 3E-06 49.4 4.0 25 159-183 3-27 (213)
344 2o8b_B DNA mismatch repair pro 92.4 0.5 1.7E-05 54.4 10.9 22 159-180 789-810 (1022)
345 2dyk_A GTP-binding protein; GT 92.4 0.076 2.6E-06 45.5 3.2 22 161-182 3-24 (161)
346 2f1r_A Molybdopterin-guanine d 92.4 0.057 1.9E-06 49.1 2.5 25 160-184 3-27 (171)
347 2ged_A SR-beta, signal recogni 92.4 0.094 3.2E-06 46.7 3.9 26 157-182 46-71 (193)
348 1mv5_A LMRA, multidrug resista 92.4 0.063 2.2E-06 51.2 2.9 28 156-183 25-52 (243)
349 2zu0_C Probable ATP-dependent 92.3 0.074 2.5E-06 51.6 3.4 26 157-182 44-69 (267)
350 1upt_A ARL1, ADP-ribosylation 92.1 0.11 3.9E-06 44.8 4.1 26 157-182 5-30 (171)
351 1kao_A RAP2A; GTP-binding prot 92.1 0.09 3.1E-06 45.0 3.4 23 160-182 4-26 (167)
352 2ce2_X GTPase HRAS; signaling 92.1 0.086 2.9E-06 45.0 3.2 23 160-182 4-26 (166)
353 2olj_A Amino acid ABC transpor 92.1 0.068 2.3E-06 51.9 2.8 27 157-183 48-74 (263)
354 2d2e_A SUFC protein; ABC-ATPas 92.1 0.07 2.4E-06 51.2 2.9 26 157-182 27-52 (250)
355 2wsm_A Hydrogenase expression/ 92.1 0.11 3.9E-06 47.5 4.2 27 158-184 29-55 (221)
356 2ghi_A Transport protein; mult 92.1 0.07 2.4E-06 51.6 2.9 27 157-183 44-70 (260)
357 1u8z_A RAS-related protein RAL 92.0 0.093 3.2E-06 44.9 3.4 24 159-182 4-27 (168)
358 3bc1_A RAS-related protein RAB 92.0 0.092 3.2E-06 46.3 3.4 26 157-182 9-34 (195)
359 2ixe_A Antigen peptide transpo 92.0 0.072 2.4E-06 51.9 2.9 27 157-183 43-69 (271)
360 3fvq_A Fe(3+) IONS import ATP- 92.0 0.082 2.8E-06 53.9 3.3 27 157-183 28-54 (359)
361 1lw7_A Transcriptional regulat 92.0 0.083 2.9E-06 53.2 3.4 27 159-185 170-196 (365)
362 1g6h_A High-affinity branched- 92.0 0.062 2.1E-06 51.8 2.3 27 157-183 31-57 (257)
363 1ky3_A GTP-binding protein YPT 91.9 0.095 3.2E-06 45.7 3.4 25 158-182 7-31 (182)
364 2fwr_A DNA repair protein RAD2 91.9 0.26 9E-06 50.8 7.2 33 161-193 110-142 (472)
365 1ji0_A ABC transporter; ATP bi 91.9 0.065 2.2E-06 51.1 2.3 27 157-183 30-56 (240)
366 2ff7_A Alpha-hemolysin translo 91.8 0.065 2.2E-06 51.4 2.3 27 157-183 33-59 (247)
367 2pze_A Cystic fibrosis transme 91.8 0.066 2.2E-06 50.7 2.3 27 157-183 32-58 (229)
368 3sop_A Neuronal-specific septi 91.8 0.092 3.1E-06 51.1 3.4 23 161-183 4-26 (270)
369 2vp4_A Deoxynucleoside kinase; 91.8 0.069 2.4E-06 50.1 2.4 26 157-182 18-43 (230)
370 1ek0_A Protein (GTP-binding pr 91.8 0.098 3.4E-06 45.0 3.2 23 160-182 4-26 (170)
371 2qm8_A GTPase/ATPase; G protei 91.7 0.12 4.2E-06 51.8 4.4 28 156-183 52-79 (337)
372 2nzj_A GTP-binding protein REM 91.7 0.1 3.5E-06 45.3 3.3 24 159-182 4-27 (175)
373 1vpl_A ABC transporter, ATP-bi 91.7 0.08 2.7E-06 51.2 2.8 27 157-183 39-65 (256)
374 2lkc_A Translation initiation 91.7 0.1 3.6E-06 45.5 3.4 26 157-182 6-31 (178)
375 2yyz_A Sugar ABC transporter, 91.7 0.091 3.1E-06 53.5 3.4 27 157-183 27-53 (359)
376 2yz2_A Putative ABC transporte 91.7 0.081 2.8E-06 51.3 2.9 27 157-183 31-57 (266)
377 2it1_A 362AA long hypothetical 91.7 0.092 3.1E-06 53.5 3.4 27 157-183 27-53 (362)
378 1sgw_A Putative ABC transporte 91.6 0.061 2.1E-06 50.6 1.9 26 158-183 34-59 (214)
379 1w36_D RECD, exodeoxyribonucle 91.6 0.096 3.3E-06 56.8 3.7 24 160-183 165-188 (608)
380 1f2t_A RAD50 ABC-ATPase; DNA d 91.6 0.11 3.9E-06 45.7 3.5 25 159-183 23-47 (149)
381 1z0j_A RAB-22, RAS-related pro 91.6 0.1 3.6E-06 44.9 3.2 23 160-182 7-29 (170)
382 3gfo_A Cobalt import ATP-bindi 91.6 0.069 2.4E-06 52.2 2.3 27 157-183 32-58 (275)
383 2wji_A Ferrous iron transport 91.6 0.098 3.4E-06 45.7 3.1 23 160-182 4-26 (165)
384 3clv_A RAB5 protein, putative; 91.6 0.13 4.5E-06 45.5 3.9 25 158-182 6-30 (208)
385 3d31_A Sulfate/molybdate ABC t 91.6 0.081 2.8E-06 53.6 2.8 27 157-183 24-50 (348)
386 1wms_A RAB-9, RAB9, RAS-relate 91.6 0.1 3.6E-06 45.4 3.2 24 159-182 7-30 (177)
387 1g16_A RAS-related protein SEC 91.6 0.11 3.8E-06 44.7 3.4 23 160-182 4-26 (170)
388 4hlc_A DTMP kinase, thymidylat 91.5 0.18 6.2E-06 46.9 5.0 32 160-191 3-36 (205)
389 4g1u_C Hemin import ATP-bindin 91.5 0.073 2.5E-06 51.7 2.3 27 157-183 35-61 (266)
390 3rlf_A Maltose/maltodextrin im 91.5 0.097 3.3E-06 53.7 3.4 27 157-183 27-53 (381)
391 1z08_A RAS-related protein RAB 91.5 0.11 3.7E-06 44.9 3.2 24 159-182 6-29 (170)
392 1v43_A Sugar-binding transport 91.5 0.098 3.3E-06 53.5 3.4 27 157-183 35-61 (372)
393 2zej_A Dardarin, leucine-rich 91.5 0.083 2.8E-06 47.1 2.5 21 161-181 4-24 (184)
394 2hf9_A Probable hydrogenase ni 91.5 0.14 4.8E-06 47.0 4.2 26 158-183 37-62 (226)
395 3a1s_A Iron(II) transport prot 91.4 0.28 9.6E-06 47.0 6.4 23 160-182 6-28 (258)
396 2qi9_C Vitamin B12 import ATP- 91.4 0.076 2.6E-06 51.1 2.3 28 157-184 24-51 (249)
397 3e2i_A Thymidine kinase; Zn-bi 91.4 0.15 5E-06 48.5 4.2 34 158-191 27-63 (219)
398 1r2q_A RAS-related protein RAB 91.4 0.11 3.9E-06 44.6 3.2 24 159-182 6-29 (170)
399 1r8s_A ADP-ribosylation factor 91.4 0.12 4.2E-06 44.4 3.4 22 161-182 2-23 (164)
400 1dek_A Deoxynucleoside monopho 91.4 0.1 3.5E-06 50.1 3.2 28 160-187 2-29 (241)
401 1z47_A CYSA, putative ABC-tran 91.3 0.092 3.1E-06 53.4 2.9 26 158-183 40-65 (355)
402 2wjg_A FEOB, ferrous iron tran 91.3 0.11 3.9E-06 45.8 3.2 23 160-182 8-30 (188)
403 2nq2_C Hypothetical ABC transp 91.3 0.079 2.7E-06 51.0 2.3 27 157-183 29-55 (253)
404 2ihy_A ABC transporter, ATP-bi 91.3 0.08 2.7E-06 51.8 2.3 27 157-183 45-71 (279)
405 1c1y_A RAS-related protein RAP 91.2 0.13 4.4E-06 44.2 3.4 23 160-182 4-26 (167)
406 2erx_A GTP-binding protein DI- 91.2 0.1 3.4E-06 45.0 2.7 23 160-182 4-26 (172)
407 2y8e_A RAB-protein 6, GH09086P 91.1 0.12 4.2E-06 44.9 3.2 23 160-182 15-37 (179)
408 1g29_1 MALK, maltose transport 91.1 0.097 3.3E-06 53.5 2.9 26 158-183 28-53 (372)
409 4dcu_A GTP-binding protein ENG 91.1 0.27 9.3E-06 51.1 6.4 23 160-182 24-46 (456)
410 3q85_A GTP-binding protein REM 91.1 0.12 4.1E-06 44.7 3.1 21 161-181 4-24 (169)
411 2wjy_A Regulator of nonsense t 91.0 0.12 4E-06 58.0 3.7 23 160-182 372-394 (800)
412 3q72_A GTP-binding protein RAD 91.0 0.11 3.9E-06 44.6 2.9 21 161-181 4-24 (166)
413 1pui_A ENGB, probable GTP-bind 91.0 0.07 2.4E-06 48.3 1.6 26 157-182 24-49 (210)
414 1oxx_K GLCV, glucose, ABC tran 91.0 0.082 2.8E-06 53.6 2.2 27 157-183 29-55 (353)
415 1z0f_A RAB14, member RAS oncog 91.0 0.13 4.5E-06 44.7 3.2 24 159-182 15-38 (179)
416 3i8s_A Ferrous iron transport 90.9 0.56 1.9E-05 45.2 8.0 24 159-182 3-26 (274)
417 2hxs_A RAB-26, RAS-related pro 90.9 0.13 4.3E-06 44.9 3.1 24 159-182 6-29 (178)
418 1m7b_A RND3/RHOE small GTP-bin 90.8 0.14 4.8E-06 45.4 3.4 25 158-182 6-30 (184)
419 3b1v_A Ferrous iron uptake tra 90.8 0.43 1.5E-05 46.3 7.0 23 160-182 4-26 (272)
420 2gj8_A MNME, tRNA modification 90.8 0.15 5.2E-06 45.0 3.6 24 159-182 4-27 (172)
421 1svi_A GTP-binding protein YSX 90.8 0.14 4.8E-06 45.5 3.3 25 158-182 22-46 (195)
422 3gd7_A Fusion complex of cysti 90.8 0.13 4.3E-06 53.0 3.3 26 157-182 45-70 (390)
423 2fn4_A P23, RAS-related protei 90.8 0.15 5.1E-06 44.4 3.4 24 159-182 9-32 (181)
424 2orv_A Thymidine kinase; TP4A 90.8 0.85 2.9E-05 43.6 8.9 33 159-191 19-54 (234)
425 2a9k_A RAS-related protein RAL 90.8 0.15 5E-06 44.7 3.4 24 159-182 18-41 (187)
426 3hjn_A DTMP kinase, thymidylat 90.7 0.25 8.6E-06 45.5 5.1 32 162-193 3-37 (197)
427 3iby_A Ferrous iron transport 90.7 0.41 1.4E-05 45.9 6.8 22 161-182 3-24 (256)
428 2bme_A RAB4A, RAS-related prot 90.7 0.14 4.8E-06 45.1 3.2 24 159-182 10-33 (186)
429 3con_A GTPase NRAS; structural 90.7 0.14 4.8E-06 45.4 3.2 23 160-182 22-44 (190)
430 2atv_A RERG, RAS-like estrogen 90.7 0.18 6E-06 45.2 3.9 25 158-182 27-51 (196)
431 2efe_B Small GTP-binding prote 90.6 0.15 5E-06 44.6 3.2 24 159-182 12-35 (181)
432 2oil_A CATX-8, RAS-related pro 90.6 0.14 5E-06 45.5 3.2 25 158-182 24-48 (193)
433 2xau_A PRE-mRNA-splicing facto 90.6 0.31 1.1E-05 54.4 6.6 23 160-182 110-132 (773)
434 4dsu_A GTPase KRAS, isoform 2B 90.6 0.14 4.7E-06 45.1 3.0 24 159-182 4-27 (189)
435 2pjz_A Hypothetical protein ST 90.5 0.12 4.1E-06 50.2 2.8 25 159-183 30-54 (263)
436 2bbs_A Cystic fibrosis transme 90.5 0.12 4.1E-06 50.9 2.8 27 157-183 62-88 (290)
437 3tw8_B RAS-related protein RAB 90.5 0.14 4.7E-06 44.6 2.9 24 159-182 9-32 (181)
438 3bwd_D RAC-like GTP-binding pr 90.4 0.19 6.5E-06 43.9 3.8 24 159-182 8-31 (182)
439 1m2o_B GTP-binding protein SAR 90.4 0.17 5.7E-06 45.5 3.5 24 159-182 23-46 (190)
440 1moz_A ARL1, ADP-ribosylation 90.3 0.14 4.7E-06 45.0 2.8 25 157-181 16-40 (183)
441 2g6b_A RAS-related protein RAB 90.3 0.15 5.1E-06 44.5 3.0 25 158-182 9-33 (180)
442 3t1o_A Gliding protein MGLA; G 90.3 0.16 5.6E-06 44.8 3.2 24 160-183 15-38 (198)
443 1mh1_A RAC1; GTP-binding, GTPa 90.3 0.17 5.8E-06 44.3 3.3 23 160-182 6-28 (186)
444 2cxx_A Probable GTP-binding pr 90.1 0.16 5.3E-06 44.8 3.0 22 161-182 3-24 (190)
445 3dz8_A RAS-related protein RAB 90.1 0.18 6.1E-06 45.0 3.4 25 159-183 23-47 (191)
446 3kkq_A RAS-related protein M-R 90.1 0.19 6.5E-06 44.2 3.5 24 159-182 18-41 (183)
447 2gza_A Type IV secretion syste 90.1 0.14 4.8E-06 51.8 3.0 26 159-184 175-200 (361)
448 2npi_A Protein CLP1; CLP1-PCF1 90.1 0.16 5.5E-06 53.3 3.5 26 158-183 137-162 (460)
449 2gf9_A RAS-related protein RAB 90.1 0.17 5.9E-06 44.9 3.2 24 159-182 22-45 (189)
450 2p5s_A RAS and EF-hand domain 90.0 0.2 7E-06 45.0 3.7 26 157-182 26-51 (199)
451 3tkl_A RAS-related protein RAB 90.0 0.19 6.4E-06 44.7 3.4 25 158-182 15-39 (196)
452 2xzl_A ATP-dependent helicase 90.0 0.16 5.3E-06 57.1 3.5 33 161-193 377-413 (802)
453 1ksh_A ARF-like protein 2; sma 90.0 0.2 6.8E-06 44.2 3.6 26 157-182 16-41 (186)
454 3pqc_A Probable GTP-binding pr 89.9 0.15 5E-06 45.1 2.6 23 160-182 24-46 (195)
455 1vg8_A RAS-related protein RAB 89.9 0.19 6.5E-06 45.1 3.4 25 158-182 7-31 (207)
456 2obl_A ESCN; ATPase, hydrolase 89.9 0.27 9.1E-06 49.7 4.8 30 157-186 69-98 (347)
457 3nh6_A ATP-binding cassette SU 89.9 0.12 4.3E-06 51.3 2.3 28 156-183 77-104 (306)
458 1x3s_A RAS-related protein RAB 89.8 0.18 6.3E-06 44.5 3.2 23 160-182 16-38 (195)
459 2fg5_A RAB-22B, RAS-related pr 89.8 0.18 6.2E-06 45.1 3.2 25 158-182 22-46 (192)
460 3t5g_A GTP-binding protein RHE 89.8 0.19 6.4E-06 44.1 3.2 24 159-182 6-29 (181)
461 3qks_A DNA double-strand break 89.8 0.2 6.8E-06 46.3 3.5 27 159-185 23-49 (203)
462 1z06_A RAS-related protein RAB 89.8 0.2 6.7E-06 44.6 3.4 24 159-182 20-43 (189)
463 2www_A Methylmalonic aciduria 89.8 0.23 7.8E-06 50.0 4.2 25 159-183 74-98 (349)
464 2x77_A ADP-ribosylation factor 89.8 0.18 6.2E-06 44.7 3.1 25 157-181 20-44 (189)
465 3c5c_A RAS-like protein 12; GD 89.7 0.19 6.4E-06 44.9 3.2 23 160-182 22-44 (187)
466 2gf0_A GTP-binding protein DI- 89.7 0.26 8.9E-06 43.8 4.2 25 158-182 7-31 (199)
467 2iwr_A Centaurin gamma 1; ANK 89.7 0.15 5.2E-06 44.6 2.5 24 159-182 7-30 (178)
468 1zj6_A ADP-ribosylation factor 89.7 0.23 8E-06 44.0 3.8 26 157-182 14-39 (187)
469 3t34_A Dynamin-related protein 89.7 1.5 5.3E-05 43.7 10.3 25 157-182 33-57 (360)
470 1zd9_A ADP-ribosylation factor 89.7 0.18 6.1E-06 45.0 3.0 25 158-182 21-45 (188)
471 3tui_C Methionine import ATP-b 89.6 0.18 6.3E-06 51.4 3.4 27 157-183 52-78 (366)
472 2dpy_A FLII, flagellum-specifi 89.5 0.31 1.1E-05 50.8 5.1 31 156-186 154-184 (438)
473 2bov_A RAla, RAS-related prote 89.5 0.22 7.6E-06 44.5 3.5 24 159-182 14-37 (206)
474 2a5j_A RAS-related protein RAB 89.5 0.2 6.9E-06 44.7 3.2 24 159-182 21-44 (191)
475 3cph_A RAS-related protein SEC 89.5 0.24 8.1E-06 44.7 3.8 25 158-182 19-43 (213)
476 3ihw_A Centg3; RAS, centaurin, 89.5 0.2 7E-06 44.7 3.2 23 160-182 21-43 (184)
477 3reg_A RHO-like small GTPase; 89.4 0.21 7.1E-06 44.6 3.2 25 158-182 22-46 (194)
478 1fzq_A ADP-ribosylation factor 89.3 0.24 8.2E-06 44.0 3.6 25 158-182 15-39 (181)
479 3oes_A GTPase rhebl1; small GT 89.3 0.22 7.6E-06 44.9 3.4 25 158-182 23-47 (201)
480 2fh5_B SR-beta, signal recogni 89.2 0.23 8E-06 45.0 3.5 24 159-182 7-30 (214)
481 2bcg_Y Protein YP2, GTP-bindin 89.2 0.21 7.3E-06 45.0 3.2 24 159-182 8-31 (206)
482 1f6b_A SAR1; gtpases, N-termin 89.2 0.23 7.7E-06 45.0 3.4 23 159-181 25-47 (198)
483 1zbd_A Rabphilin-3A; G protein 89.2 0.21 7.1E-06 44.9 3.1 24 159-182 8-31 (203)
484 1gwn_A RHO-related GTP-binding 89.0 0.22 7.6E-06 45.5 3.2 25 158-182 27-51 (205)
485 2qe7_A ATP synthase subunit al 88.9 0.57 1.9E-05 49.7 6.5 64 162-232 165-229 (502)
486 2r9v_A ATP synthase subunit al 88.8 0.51 1.8E-05 50.1 6.2 64 162-232 178-242 (515)
487 4gzl_A RAS-related C3 botulinu 88.7 0.29 9.8E-06 44.4 3.7 26 157-182 28-53 (204)
488 2ew1_A RAS-related protein RAB 88.7 0.24 8.3E-06 45.2 3.2 24 159-182 26-49 (201)
489 2hjg_A GTP-binding protein ENG 88.7 0.54 1.8E-05 48.5 6.2 22 161-182 5-26 (436)
490 3lxx_A GTPase IMAP family memb 88.7 0.24 8E-06 46.4 3.2 25 158-182 28-52 (239)
491 2atx_A Small GTP binding prote 88.6 0.25 8.6E-06 44.0 3.2 23 160-182 19-41 (194)
492 2b6h_A ADP-ribosylation factor 88.6 0.29 9.9E-06 44.0 3.6 26 157-182 27-52 (192)
493 2fu5_C RAS-related protein RAB 88.6 0.14 4.9E-06 45.0 1.5 24 159-182 8-31 (183)
494 2h17_A ADP-ribosylation factor 88.5 0.24 8E-06 43.8 2.9 24 159-182 21-44 (181)
495 4ag6_A VIRB4 ATPase, type IV s 88.4 0.45 1.5E-05 48.1 5.3 34 159-192 35-71 (392)
496 3qkt_A DNA double-strand break 88.4 0.27 9.1E-06 49.1 3.5 25 159-183 23-47 (339)
497 2qag_B Septin-6, protein NEDD5 88.3 0.23 7.9E-06 51.7 3.1 26 157-182 38-65 (427)
498 2q3h_A RAS homolog gene family 88.3 0.31 1E-05 43.7 3.6 25 158-182 19-43 (201)
499 2fv8_A H6, RHO-related GTP-bin 88.3 0.27 9.1E-06 44.6 3.2 24 159-182 25-48 (207)
500 4bas_A ADP-ribosylation factor 88.2 0.26 8.9E-06 43.8 3.0 25 158-182 16-40 (199)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=1.3e-49 Score=397.93 Aligned_cols=293 Identities=90% Similarity=1.437 Sum_probs=252.8
Q ss_pred ccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCCh
Q 011914 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203 (475)
Q Consensus 124 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~ 203 (475)
+|+++.+++|+|++|++++..+++++++..++.++|+++|||||||||||++|++||++++.+|+.++++++.++|+|++
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~ 80 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP 80 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEE
Q 011914 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283 (475)
Q Consensus 204 e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~ 283 (475)
++.++++|..|.+.++...|+||||||||++++++.+..+.+..++.+...|++++++.+.+++++.+......+++||+
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 99999999999877778999999999999999877655666667889999999999999989999886666788999999
Q ss_pred ecCCCCCCccccccCCCceEEEecCCHHHHHHHHHhhcCCCCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHH
Q 011914 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (475)
Q Consensus 284 TTN~~~~Ld~aLlR~GRfd~~i~~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~ 363 (475)
|||+++.||++++|+|||++.+++|+.++|.+|++.++...+++.+.+++++++|++++++|+++++++.+++++++|+.
T Consensus 161 ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~ 240 (293)
T 3t15_A 161 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240 (293)
T ss_dssp ECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HhcchhhhhhhccCCCCCCCcCCCcccHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011914 364 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416 (475)
Q Consensus 364 ~~~~e~i~~~lv~~~~~~~~f~~~~~t~e~ll~~~~~lv~eqe~v~~~~l~~~ 416 (475)
+.|.+++.+.+++.+...|.|.++.+++++|+++++.++.||++++.++|+++
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~~ 293 (293)
T 3t15_A 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293 (293)
T ss_dssp HTCSTTCHHHHTSCSSCSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999988999999999999999999999999999999999863
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-38 Score=326.96 Aligned_cols=207 Identities=17% Similarity=0.262 Sum_probs=171.4
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
|+++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|++++.+|.+|..|+ ..+||||||||||++
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar----~~aP~IIFiDEiDai 253 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSI 253 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH----HTCSEEEEEESSSCC
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH----HhCCceEeeecchhh
Confidence 7899999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
+++|...... .+..+..++..++. +|||+ ....+|+||+|||+|+.|||||+||||||+.|+ +|+.++
T Consensus 254 ~~~R~~~~~~--~~~~~~~~l~~lL~-----~lDg~---~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 254 GSTRVEGSGG--GDSEVQRTMLELLN-----QLDGF---ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp TTSCSCSSSG--GGGHHHHHHHHHHH-----HHHTT---TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred ccCCCCCCCC--CcHHHHHHHHHHHH-----hhhcc---CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHH
Confidence 9887533221 11222223333333 56666 567899999999999999999999999999999 599999
Q ss_pred HHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCc
Q 011914 313 RIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 388 (475)
Q Consensus 313 R~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~~~ 388 (475)
|.+||+.++++ .+++.+.+++.+++|+|++|. ++|..+...++++- ...
T Consensus 324 R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~---~l~~eA~~~Air~~------------------------~~~ 376 (405)
T 4b4t_J 324 RAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVK---GVCTEAGMYALRER------------------------RIH 376 (405)
T ss_dssp HHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHTT------------------------CSB
T ss_pred HHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHcC------------------------CCC
Confidence 99999988876 356778899999999999888 78877777666530 124
Q ss_pred ccHHHHHHHHhhhh
Q 011914 389 MTLDKLLEYGRMLV 402 (475)
Q Consensus 389 ~t~e~ll~~~~~lv 402 (475)
++.+++..+.+...
T Consensus 377 vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 377 VTQEDFELAVGKVM 390 (405)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh
Confidence 67788877766543
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-37 Score=323.94 Aligned_cols=189 Identities=25% Similarity=0.366 Sum_probs=159.9
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|+++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|++++.++.+|..|+ ..+||||||||+|+
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~----~~~P~IifiDEiDa 285 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK----EHEPCIIFMDEVDA 285 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH----HSCSEEEEEECCCS
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHH----hcCCceeeeecccc
Confidence 37899999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
++++|...... ..+.+..++..++. +|||+ ....+|+||+|||+|+.|||||+||||||+.|+ +|+.+
T Consensus 286 i~~~R~~~~~~--~~~~~~~~l~~lL~-----~lDg~---~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~ 355 (437)
T 4b4t_L 286 IGGRRFSEGTS--ADREIQRTLMELLT-----QMDGF---DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355 (437)
T ss_dssp SSCCCSSSCCS--STTHHHHHHHHHHH-----HHHSS---SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHH
T ss_pred cccccccCCCC--cchHHHHHHHHHHH-----Hhhcc---cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHH
Confidence 99887532221 12222233333333 56666 556889999999999999999999999999999 69999
Q ss_pred HHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHH
Q 011914 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359 (475)
Q Consensus 312 eR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~ 359 (475)
+|.+||+.++.+ .+++.+.+++.+++|+|++|. ++|..+...+++
T Consensus 356 ~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~---~l~~eA~~~air 404 (437)
T 4b4t_L 356 GRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIR---NCATEAGFFAIR 404 (437)
T ss_dssp HHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHH
Confidence 999999988875 457788999999999998887 777776666654
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-37 Score=320.99 Aligned_cols=190 Identities=22% Similarity=0.332 Sum_probs=160.4
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|+++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|+++++++.+|..|+ ..+||||||||+|+
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar----~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAG----ENAPSIVFIDEIDA 286 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHH----HTCSEEEEEEEESS
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHH----hcCCcEEEEehhhh
Confidence 37899999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
++++|....... ...+..++..++. ++||. ....+|+||+|||+++.||+||+||||||+.|+ +|+.+
T Consensus 287 i~~~R~~~~~~~--~~~~~~~l~~LL~-----~lDg~---~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~ 356 (437)
T 4b4t_I 287 IGTKRYDSNSGG--EREIQRTMLELLN-----QLDGF---DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356 (437)
T ss_dssp SSCCCSCSSCSS--CCHHHHHHHHHHH-----HHHHC---CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHH
T ss_pred hcccCCCCCCCc--cHHHHHHHHHHHH-----HhhCc---CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHH
Confidence 999875432211 1122223333333 55555 566889999999999999999999999999999 69999
Q ss_pred HHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 312 eR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
+|.+||+.++.+ .+++.+.+++.+++|+|++|. ++|..+...++++
T Consensus 357 ~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~---~l~~eA~~~Air~ 406 (437)
T 4b4t_I 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQ---AMCTEAGLLALRE 406 (437)
T ss_dssp HHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHc
Confidence 999999998875 456788999999999999888 7777777666553
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=319.71 Aligned_cols=209 Identities=20% Similarity=0.288 Sum_probs=173.0
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|+++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|++++++|.+|..|+ ..+||||||||+|+
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar----~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMAR----TKKACIIFFDEIDA 313 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHH----HTCSEEEEEECCTT
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHH----hcCCceEeeccccc
Confidence 37899999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
++.+|...... ....+..++..++. +|+|. ....+|+||+|||+++.||+||+||||||+.|+ +|+.+
T Consensus 314 i~~~R~~~~~~--~~~~~~~~l~~lL~-----~lDg~---~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~ 383 (467)
T 4b4t_H 314 VGGARFDDGAG--GDNEVQRTMLELIT-----QLDGF---DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLE 383 (467)
T ss_dssp TSBCCSSSSCG--GGGHHHHHHHHHHH-----HHHSS---CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHH
T ss_pred ccccccCcCCC--ccHHHHHHHHHHHH-----Hhhcc---CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHH
Confidence 99887643221 12223333333333 56665 567889999999999999999999999999999 69999
Q ss_pred HHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCC
Q 011914 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 387 (475)
Q Consensus 312 eR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~~ 387 (475)
+|.+||+.+++. .+++.+.+++.+++|+|++|. ++|..+...++++- ..
T Consensus 384 ~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~---~l~~eAa~~Air~~------------------------~~ 436 (467)
T 4b4t_H 384 GRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELR---SVCTEAGMFAIRAR------------------------RK 436 (467)
T ss_dssp HHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHHT------------------------CS
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHcC------------------------CC
Confidence 999999988875 457788999999999999988 78877777666541 12
Q ss_pred cccHHHHHHHHhhhhh
Q 011914 388 KMTLDKLLEYGRMLVQ 403 (475)
Q Consensus 388 ~~t~e~ll~~~~~lv~ 403 (475)
.++.+++.++....+.
T Consensus 437 ~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 437 VATEKDFLKAVDKVIS 452 (467)
T ss_dssp SBCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhc
Confidence 3567788777666544
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-37 Score=320.67 Aligned_cols=189 Identities=22% Similarity=0.361 Sum_probs=162.4
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
|+++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|+++++++.+|..|+ ..+||||||||+|++
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~----~~aP~IifiDEiDal 286 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAK----EKAPTIIFIDELDAI 286 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHH----HHCSEEEEEECTHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHH----hcCCeEEeecchhhh
Confidence 7899999999999999999999999999999999999999999999999999999999998 889999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
+++|..... ...+.+..++..++. +|+|+ ....+|+||+|||+|+.||+||+||||||+.|+ +|+.++
T Consensus 287 ~~~R~~~~~--~~~~~~~~~~~~lL~-----~ldg~---~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~ 356 (434)
T 4b4t_M 287 GTKRFDSEK--SGDREVQRTMLELLN-----QLDGF---SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDS 356 (434)
T ss_dssp HCCCSSGGG--GTTHHHHHHHHHHHH-----HHTTS---CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHH
T ss_pred hhccCCCCC--CCchHHHHHHHHHHH-----Hhhcc---CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHH
Confidence 988764222 222333344444444 67776 556789999999999999999999999999999 699999
Q ss_pred HHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 313 RIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 313 R~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
|.+||+.++++ .+++.+.+++.+++|+|++|. ++|..+...++++
T Consensus 357 R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~---~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 357 RAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLK---AVTVEAGMIALRN 405 (434)
T ss_dssp HHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHc
Confidence 99999988764 467888999999999999988 7887777766654
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-36 Score=312.61 Aligned_cols=189 Identities=21% Similarity=0.290 Sum_probs=159.6
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|+++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|++++.|+.+|..|+ ..+||||||||+|+
T Consensus 201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~----~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAR----ENAPSIIFIDEVDS 276 (428)
T ss_dssp HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHH----HTCSEEEEEECTHH
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHH----HcCCCeeechhhhh
Confidence 37899999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred cccCCCCCccc-chhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe---cCC
Q 011914 234 GAGRMGGTTQY-TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW---APT 309 (475)
Q Consensus 234 l~~~r~~~~~~-~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~---~P~ 309 (475)
++++|...... +...+++...|++ +|||+ ....+|+||+|||+++.|||||+||||||+.|+ +|+
T Consensus 277 i~~~R~~~~~~~~~~~~r~l~~lL~--------~ldg~---~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd 345 (428)
T 4b4t_K 277 IATKRFDAQTGSDREVQRILIELLT--------QMDGF---DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345 (428)
T ss_dssp HHCSCSSSCSCCCCHHHHHHHHHHH--------HHHHS---CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCC
T ss_pred hhccccCCCCCCChHHHHHHHHHHH--------HhhCC---CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCC
Confidence 99887532221 1122333334444 55565 456789999999999999999999999999987 379
Q ss_pred HHHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 310 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 310 ~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
.++|..||+.++.+ .+++.+.++..+++|+|++|. ++|..+...++++
T Consensus 346 ~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~---~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 346 RRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIA---AIMQEAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHC
Confidence 99999999988875 356778899999999999888 7887777666653
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.6e-36 Score=333.91 Aligned_cols=247 Identities=19% Similarity=0.304 Sum_probs=148.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+.++|+|+|||||||||||++|+++|++++.+|+.++.+++.++|+|+++++|+++|+.|+ ..+||||||||||++
T Consensus 507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar----~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR----QAAPCVLFFDELDSI 582 (806)
T ss_dssp CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHH----TTCSEEEECSCGGGC
T ss_pred CCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHH----HcCCceeechhhhHH
Confidence 6789999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccCCCCCc--ccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 235 AGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 235 ~~~r~~~~--~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
+++|+... ......+.+++ |+. +|||+ ....+|+||+|||+|+.||+|++||||||+.++ +|+.
T Consensus 583 ~~~R~~~~~~~~~~~~rv~~~-lL~--------~mdg~---~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~ 650 (806)
T 3cf2_A 583 AKARGGNIGDGGGAADRVINQ-ILT--------EMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650 (806)
T ss_dssp C--------------CHHHHH-HHH--------HHHSS---CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----
T ss_pred hhccCCCCCCCchHHHHHHHH-HHH--------HHhCC---CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCH
Confidence 99876322 22233455554 444 45565 556789999999999999999999999999999 6999
Q ss_pred HHHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhcc-CCCCCCCcC
Q 011914 311 EDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVN-SKEGPPTFE 385 (475)
Q Consensus 311 eeR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~-~~~~~~~f~ 385 (475)
++|.+||+.++++. +++.+.+++.+++|+|++|. ++|..+...++++.++...........-. .........
T Consensus 651 ~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~---~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (806)
T 3cf2_A 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDP 727 (806)
T ss_dssp CHHHHTTTTTSSCC--CCC----------------CHH---HHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccc
Confidence 99999999998863 56677899999999999999 99999999999988765311110000000 000000111
Q ss_pred CCcccHHH---HHHHHhhhhhhHHHHHHHHHHHHHhhh
Q 011914 386 QPKMTLDK---LLEYGRMLVQEQENVKRVQLADKYLSE 420 (475)
Q Consensus 386 ~~~~t~e~---ll~~~~~lv~eqe~v~~~~l~~~~~~~ 420 (475)
.+.++.++ .++..+..+.+++...|++|.+++.+.
T Consensus 728 ~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 728 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp CCC----CCTTTC---------------CCCC------
T ss_pred cCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 22344433 455666677887777887777776443
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=1.1e-31 Score=299.84 Aligned_cols=193 Identities=23% Similarity=0.326 Sum_probs=168.2
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..|+++|+|||||||||||||+||++||+++|.+|+.++++++.++|.|++++.++.+|..|+ .++||||||||||
T Consensus 232 ~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~----~~~PsIIfIDEiD 307 (806)
T 3cf2_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPAIIFIDELD 307 (806)
T ss_dssp SCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHT----TSCSEEEEEESGG
T ss_pred hcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHH----HcCCeEEEEehhc
Confidence 457899999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
+++++|++ .......+ +...|+.+++ |. ....+|+||+|||+++.||++|+|+||||+.|+ +|+.
T Consensus 308 al~~~r~~-~~~~~~~r-iv~~LL~~md--------g~---~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~ 374 (806)
T 3cf2_A 308 AIAPKREK-THGEVERR-IVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp GTCCTTTT-CCCTTHHH-HHHHHHTHHH--------HC---CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCH
T ss_pred ccccccCC-CCChHHHH-HHHHHHHHHh--------cc---cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCH
Confidence 99998764 33334444 4445555333 33 335689999999999999999999999999999 6999
Q ss_pred HHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHh
Q 011914 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV 365 (475)
Q Consensus 311 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~ 365 (475)
++|.+||+.+++. .+++.+.++..+.+|+|+++. +++.++...++++....+
T Consensus 375 ~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~---~Lv~eA~~~A~~r~~~~i 430 (806)
T 3cf2_A 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA---ALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp HHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHhccccc
Confidence 9999999998875 567888999999999999998 899999999998877654
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=246.12 Aligned_cols=243 Identities=18% Similarity=0.258 Sum_probs=178.9
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh-CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el-g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
+..+|+++|||||||||||++|+++|+++ +.+|+.++++++.++|.|++++.++.+|..|+ ..+|+||||||+|.
T Consensus 41 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~----~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 41 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR----ENKPSIIFIDEIDS 116 (322)
T ss_dssp TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHH----HTSSEEEEEETTTG
T ss_pred CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHH----hcCCcEEEeecHHH
Confidence 35677999999999999999999999999 89999999999999999999999999999887 88999999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
+.+++... ......+.++. |+..++ |. .....+++||+|||+++.||++++| ||+..++ +|+.+
T Consensus 117 l~~~~~~~-~~~~~~~~~~~-ll~~ld--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 117 LCGSRSEN-ESEAARRIKTE-FLVQMQ--------GV--GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPH 182 (322)
T ss_dssp GGCCSSSC-CTTHHHHHHHH-HHHHHH--------CS--SSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHH
T ss_pred hccccccc-cchHHHHHHHH-HHHHHh--------cc--cccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHH
Confidence 99876532 33333344444 444333 22 1235789999999999999999999 9999888 69999
Q ss_pred HHHHHHHhhcCCCC--CChH---HHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhh-----------hhc
Q 011914 312 DRIGVCSGIFRTDN--VPKE---DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGK-----------RLV 375 (475)
Q Consensus 312 eR~~Il~~~l~~~~--v~~~---~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~-----------~lv 375 (475)
+|.+||+.++...+ ++.. .+++.+.+|+|+++. +++.++...++++.+.......... ...
T Consensus 183 ~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~---~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIS---IIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLL 259 (322)
T ss_dssp HHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHH---HHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccc
Confidence 99999999987643 3444 555566778888887 8888888888888765421110000 000
Q ss_pred cC-------------CC-CCCCcCCCcccHHHHHHHHhh---hhhhHHHHHHHHHHHHHh
Q 011914 376 NS-------------KE-GPPTFEQPKMTLDKLLEYGRM---LVQEQENVKRVQLADKYL 418 (475)
Q Consensus 376 ~~-------------~~-~~~~f~~~~~t~e~ll~~~~~---lv~eqe~v~~~~l~~~~~ 418 (475)
.. .. .......+.++.+++.++.+. .+.+++...|.++.++|-
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~ 319 (322)
T 1xwi_A 260 TPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319 (322)
T ss_dssp EECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTC
T ss_pred ccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence 00 00 000112346888887766654 577777778888877763
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=5.2e-28 Score=243.92 Aligned_cols=244 Identities=20% Similarity=0.289 Sum_probs=179.2
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+..+++++|||||||||||++|+++|++++.+|+.++++++.++|.|+.++.++.+|..|+ ..+|+||||||||.+
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l 122 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR----ENKPSIIFIDQVDAL 122 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHH----HTSSEEEEEECGGGG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHH----hcCCeEEEechhhhh
Confidence 4567899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
.+++.. .+.....+.+ ..|+..++ +. .....+++||+|||+++.||++++| ||+..++ +|+.++
T Consensus 123 ~~~~~~-~~~~~~~~~~-~~ll~~l~--------~~--~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~ 188 (322)
T 3eie_A 123 TGTRGE-GESEASRRIK-TELLVQMN--------GV--GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 188 (322)
T ss_dssp SCC-------CCTHHHH-HHHHHHHG--------GG--GTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHH
T ss_pred hccCCC-CcchHHHHHH-HHHHHHhc--------cc--cccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHH
Confidence 887643 2223333344 44444333 22 2345789999999999999999999 9999888 699999
Q ss_pred HHHHHHhhcCCCC--CChH---HHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhh------hcc-C---
Q 011914 313 RIGVCSGIFRTDN--VPKE---DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR------LVN-S--- 377 (475)
Q Consensus 313 R~~Il~~~l~~~~--v~~~---~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~------lv~-~--- 377 (475)
|.+||+.++.... ++.. .++..+.+|+|+++. +++..+...++++.........+... +.. .
T Consensus 189 r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~---~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (322)
T 3eie_A 189 RTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA---VVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGD 265 (322)
T ss_dssp HHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH---HHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSC
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Confidence 9999999988654 3444 455556677777777 88888888888888776432222100 000 0
Q ss_pred ---------CCCCCCcCCCcccHHHHHHHHh---hhhhhHHHHHHHHHHHHHhh
Q 011914 378 ---------KEGPPTFEQPKMTLDKLLEYGR---MLVQEQENVKRVQLADKYLS 419 (475)
Q Consensus 378 ---------~~~~~~f~~~~~t~e~ll~~~~---~lv~eqe~v~~~~l~~~~~~ 419 (475)
.-.......+.++.+++.++.+ ..+.+.+...|.++.++|-+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 266 DGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp TTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred cccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 0001112335688888766655 45777778888888888743
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=3.4e-28 Score=243.23 Aligned_cols=244 Identities=20% Similarity=0.293 Sum_probs=178.5
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
++.++.++|||||||||||++|+++|++++.+++.++++++.+++.|+.++.++.+|..|. ...|+||||||+|.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l 120 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR----QAAPCVLFFDELDSI 120 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHH----HTCSEEEEECSTTHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHH----hcCCeEEEEEChHHH
Confidence 5678899999999999999999999999999999999999988899999999999999987 788999999999999
Q ss_pred ccCCCCCcc--cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 235 AGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 235 ~~~r~~~~~--~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
...++.... .....+.+ ..|+..++ +. ....+++||+|||+++.||++++|+|||+..++ .|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~-~~lL~~l~--------~~---~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 188 (301)
T 3cf0_A 121 AKARGGNIGDGGGAADRVI-NQILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188 (301)
T ss_dssp HHHHTTTTCCSSCSCCHHH-HHHHHHHH--------SS---CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCH
T ss_pred hhccCCCcCCcchHHHHHH-HHHHHHhh--------cc---cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCH
Confidence 875432111 11222333 44554333 22 235689999999999999999999999999888 5999
Q ss_pred HHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccC-CCCCCCcC
Q 011914 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS-KEGPPTFE 385 (475)
Q Consensus 311 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~-~~~~~~f~ 385 (475)
++|.+||+.++.. .+++.+.++..+.+|+|+++. +++.+++..++++.+............... ......-.
T Consensus 189 ~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~---~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (301)
T 3cf0_A 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDP 265 (301)
T ss_dssp HHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHH---HHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccc
Confidence 9999999998875 356677888889999999887 888888888887766542110000000000 00000011
Q ss_pred CCcccHHHHHHHHhhh---hhhHHHHHHHHHHHHH
Q 011914 386 QPKMTLDKLLEYGRML---VQEQENVKRVQLADKY 417 (475)
Q Consensus 386 ~~~~t~e~ll~~~~~l---v~eqe~v~~~~l~~~~ 417 (475)
.+.++.+++.++.+.. +.+.+...|+.|.++|
T Consensus 266 ~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 266 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 2467777777766653 6666666777776665
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=2.9e-27 Score=242.31 Aligned_cols=243 Identities=21% Similarity=0.300 Sum_probs=171.7
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+..+++++|||||||||||++|+++|++++.+|+.++++++.+.+.|+.++.++.+|..|+ ...|+||||||+|.+
T Consensus 80 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR----ENKPSIIFIDQVDAL 155 (355)
T ss_dssp SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHH----HTSSEEEEEECGGGG
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHH----HcCCeEEEEechHhh
Confidence 4567899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
.+.+... +.....+.+ ..|+..++ +. .....+++||+|||+++.||++++| ||+..++ +|+.++
T Consensus 156 ~~~r~~~-~~~~~~~~~-~~ll~~l~--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 156 TGTRGEG-ESEASRRIK-TELLVQMN--------GV--GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 221 (355)
T ss_dssp TC-------CTHHHHHH-HHHHHHHH--------HC--C---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred cccCCCC-cchHHHHHH-HHHHHHhh--------cc--cccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHH
Confidence 8876532 223333334 44444343 11 1235679999999999999999999 9999888 699999
Q ss_pred HHHHHHhhcCCCC--CChH---HHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhh------h-------
Q 011914 313 RIGVCSGIFRTDN--VPKE---DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR------L------- 374 (475)
Q Consensus 313 R~~Il~~~l~~~~--v~~~---~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~------l------- 374 (475)
|.+||+.++...+ ++.. .|+..+.+|+|+++. +++.++...++++.........+... .
T Consensus 222 r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~---~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 2qp9_X 222 RTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIA---VVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGD 298 (355)
T ss_dssp HHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHH---HHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTS
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccc
Confidence 9999999987654 3333 566667777777777 78888888888776543211110000 0
Q ss_pred ---cc-CC-C-CCCCcCCCcccHHHHHHHHhh---hhhhHHHHHHHHHHHHHh
Q 011914 375 ---VN-SK-E-GPPTFEQPKMTLDKLLEYGRM---LVQEQENVKRVQLADKYL 418 (475)
Q Consensus 375 ---v~-~~-~-~~~~f~~~~~t~e~ll~~~~~---lv~eqe~v~~~~l~~~~~ 418 (475)
+. .. . .......+.++.+++..+.+. .+.+.+...|.++.++|-
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~ 351 (355)
T 2qp9_X 299 DGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 351 (355)
T ss_dssp SSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC
T ss_pred cchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 00 00 0 000112345787887666655 577777888888888874
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=233.85 Aligned_cols=190 Identities=24% Similarity=0.378 Sum_probs=150.4
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.+...|+|++|+||||||||+|+++||.+++..++.+++.++.+.+.|+.++.++.+|+.+. ...|+++|+||+|.
T Consensus 39 ~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~----~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 39 LGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK----NSAPCVIFFDEVDA 114 (274)
T ss_dssp TTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH----HTCSEEEEEETCTT
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH----hcCCCeEeeehhhh
Confidence 36788899999999999999999999999999999999999999999999999999999887 78899999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
++..+... ......+.++ .++. +|+|. .....++++++||+|+.||++++||||||+.++ +|+.+
T Consensus 115 ~~~~r~~~-~~~~~~~~~~-~~l~--------~Lsgg---~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~ 181 (274)
T 2x8a_A 115 LCPRRSDR-ETGASVRVVN-QLLT--------EMDGL---EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181 (274)
T ss_dssp TCC----------CTTHHH-HHHH--------HHHTC---CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHH
T ss_pred hhcccCCC-cchHHHHHHH-HHHH--------hhhcc---cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHH
Confidence 88765421 1111123333 3333 34444 445678899999999999999999999999999 69999
Q ss_pred HHHHHHHhhcCC-------CCCChHHHHHH--HhcCCCCchhhHHHHHHHhhHHHHHHHHH
Q 011914 312 DRIGVCSGIFRT-------DNVPKEDIVKL--VDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (475)
Q Consensus 312 eR~~Il~~~l~~-------~~v~~~~l~~l--~~~~~g~~i~f~gal~~~~~~~av~~~i~ 363 (475)
+|.+||+.+++. .+++.+.++.. +++|+|+++. ++|.+++..++++.+.
T Consensus 182 ~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~---~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLS---ALVREASICALRQEMA 239 (274)
T ss_dssp HHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHH---HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHH---HHHHHHHHHHHHHHHh
Confidence 999999988753 34566677665 4589999988 8888888887776543
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=2.3e-26 Score=242.43 Aligned_cols=188 Identities=20% Similarity=0.271 Sum_probs=145.2
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh-CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el-g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
..+|+++|||||||||||++|+++|+++ +.+|+.++++++.+.|.|+.++.++.+|..++ ...|+||||||||.+
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l 239 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR----ENKPSIIFIDEIDSL 239 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHH----HSCSEEEEESCTTTT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHH----HcCCeEEEEechHhh
Confidence 4577999999999999999999999999 89999999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
++.+... ...... .+...|+. .+++. .....+++||+|||+++.||++|+| ||+..++ +|+.++
T Consensus 240 ~~~~~~~-~~~~~~-~~~~~lL~--------~l~~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 240 CGSRSEN-ESEAAR-RIKTEFLV--------QMQGV--GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 305 (444)
T ss_dssp CCCSSCC-CCGGGH-HHHHHHHT--------TTTCS--SCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHH
T ss_pred ccCCCCc-cccHHH-HHHHHHHH--------HHhCc--ccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHH
Confidence 8876532 223333 34444544 34443 1235789999999999999999999 9998888 699999
Q ss_pred HHHHHHhhcCCCC--CC---hHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011914 313 RIGVCSGIFRTDN--VP---KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 364 (475)
Q Consensus 313 R~~Il~~~l~~~~--v~---~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~ 364 (475)
|.+||+.++...+ ++ .+.++..+.+|+|+++. +++.++...++++.+..
T Consensus 306 r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~---~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 306 RAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS---IIVRDALMQPVRKVQSA 359 (444)
T ss_dssp HHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHH---HHHHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHhh
Confidence 9999999987643 33 34666677888888888 88888888888887654
No 16
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.94 E-value=2.7e-26 Score=243.89 Aligned_cols=184 Identities=21% Similarity=0.268 Sum_probs=142.6
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.+.+.|+++||+||||||||++|++||++++.+|+.++++++...+.|..+..++.+|..|. ...||||||||+|.
T Consensus 44 ~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~----~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 44 IGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAK----AHAPCIVFIDEIDA 119 (476)
T ss_dssp TTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHH----HTCSEEEEEETGGG
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHH----hcCCCEEEEechhh
Confidence 36788999999999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred cccCCCCCc--ccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 234 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 234 l~~~r~~~~--~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
+..++.... ......+.++..|.. ++|+ ....+++||+|||+++.||++++|+|||++.+. .|+
T Consensus 120 l~~~r~~~~~g~~~~~~~~l~~LL~~---------ld~~---~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd 187 (476)
T 2ce7_A 120 VGRHRGAGLGGGHDEREQTLNQLLVE---------MDGF---DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187 (476)
T ss_dssp TCCC---------CHHHHHHHHHHHH---------HHHS---CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred hhhhcccccCcCcHHHHHHHHHHHHH---------Hhcc---CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCC
Confidence 988764211 111122334433332 2232 224678999999999999999999999999888 599
Q ss_pred HHHHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHH
Q 011914 310 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356 (475)
Q Consensus 310 ~eeR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~ 356 (475)
.++|.+|++.+++.. +++.+.++..+.+|+|+++. +++.++...
T Consensus 188 ~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~---~lv~~Aal~ 235 (476)
T 2ce7_A 188 MLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLE---NLVNEAALL 235 (476)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHH---HHHHHHHHH
Confidence 999999999888763 34455666666666666665 555444433
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.3e-25 Score=220.62 Aligned_cols=186 Identities=23% Similarity=0.334 Sum_probs=146.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+...+.++|||||||||||++|+++|++++.+++.++++++...+.|+.+..++.+|..+. ...|+||||||+|.+
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~l 122 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAK----EKAPSIIFIDEIDAI 122 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHH----HTCSEEEEEETTHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHH----HcCCeEEEEECHHHh
Confidence 5678899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
.+++.+... .........|..+++ .+++. ....++.||+|||+++.++++++|++||+..+. .|+.++
T Consensus 123 ~~~~~~~~~--~~~~~~~~~l~~ll~-----~~~~~---~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 123 AAKRTDALT--GGDREVQRTLMQLLA-----EMDGF---DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp HBCCSSSCC--GGGGHHHHHHHHHHH-----HHHTT---CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred cccCccccC--CccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 887653211 112223333333333 23322 334689999999999999999999999999888 599999
Q ss_pred HHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHH
Q 011914 313 RIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 357 (475)
Q Consensus 313 R~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~a 357 (475)
|.+||+.++... ..+.+.++..+.+|++.++. .++..+...+
T Consensus 193 r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~---~l~~~a~~~a 238 (285)
T 3h4m_A 193 RLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELK---AICTEAGMNA 238 (285)
T ss_dssp HHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHH---HHHHHHHHHH
Confidence 999999888753 44566777777777766665 5554444333
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.93 E-value=8e-26 Score=218.58 Aligned_cols=174 Identities=24% Similarity=0.366 Sum_probs=126.5
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+...|.++|||||||||||++|+++|++++.+++.++++.+.+.+.|..+..++.+|..+. ...|+||||||+|.+
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR----ARAPCIVYIDEIDAV 110 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH----HTCSEEEEEECC---
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHH----hcCCeEEEEeCcchh
Confidence 5678899999999999999999999999999999999999999999999999999999887 788999999999999
Q ss_pred ccCCCCCcc---cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 235 AGRMGGTTQ---YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 235 ~~~r~~~~~---~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
..++..... .......+...| +.++ +. ....+++||+|||.++.+|++++|+|||+..++ .|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~ll-~~~~--------~~---~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 111 GKKRSTTMSGFSNTEEEQTLNQLL-VEMD--------GM---GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp ----------------CHHHHHHH-HHHH--------TC---CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCC
T ss_pred hccccccccCccchhHHHHHHHHH-HHhh--------Cc---CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcC
Confidence 876542110 011122333333 3222 22 234688999999999999999999999999888 699
Q ss_pred HHHHHHHHHhhcCCCCCCh------HHHHHHHhcCCCCchh
Q 011914 310 REDRIGVCSGIFRTDNVPK------EDIVKLVDTFPGQSID 344 (475)
Q Consensus 310 ~eeR~~Il~~~l~~~~v~~------~~l~~l~~~~~g~~i~ 344 (475)
.++|.+||+.++...++.. +.++..+.+|++.++.
T Consensus 179 ~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 179 LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHH
Confidence 9999999999887644432 2344444555554443
No 19
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.93 E-value=5.8e-25 Score=213.58 Aligned_cols=174 Identities=21% Similarity=0.309 Sum_probs=133.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+.+.|++++|+||||||||++|+++|++++.+++.++++.+.+.+.|+.++.++.+|+.|. ...|++|||||+|.+
T Consensus 41 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~il~iDeid~l 116 (257)
T 1lv7_A 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK----KAAPCIIFIDEIDAV 116 (257)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHH----TTCSEEEEETTHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHH----HcCCeeehhhhhhhh
Confidence 4577899999999999999999999999999999999999999999999999999999887 788999999999999
Q ss_pred ccCCCCCcccc--hhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 235 AGRMGGTTQYT--VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 235 ~~~r~~~~~~~--~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
...+....... ...+.+...|.. +++. ....+++||+|||+++.+|++++|+|||++.+. .|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ll~~---------l~~~---~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~ 184 (257)
T 1lv7_A 117 GRQRGAGLGGGHDEREQTLNQMLVE---------MDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184 (257)
T ss_dssp TCCCSTTSCCTTCHHHHHHHHHHHH---------HHTC---CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCH
T ss_pred ccCCCCCcCCCchHHHHHHHHHHHH---------hhCc---ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCH
Confidence 87654221111 112334433333 2222 335678999999999999999999999999888 6999
Q ss_pred HHHHHHHHhhcCCCCCC----hHHHHHHHhcCCCCchh
Q 011914 311 EDRIGVCSGIFRTDNVP----KEDIVKLVDTFPGQSID 344 (475)
Q Consensus 311 eeR~~Il~~~l~~~~v~----~~~l~~l~~~~~g~~i~ 344 (475)
++|.+|++.++....+. ...++..+.+|++.++.
T Consensus 185 ~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 185 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHH
Confidence 99999999988764443 33344434444444443
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=222.08 Aligned_cols=230 Identities=17% Similarity=0.231 Sum_probs=159.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
..++++|||||||||||++|+++|++++.+|+.++++++.+.+.|+.++.++.+|..+. ...|+||||||||.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR----CQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHH----HTCSEEEEEETHHHHTB
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHH----hcCCeEEEEeCchhhhc
Confidence 56899999999999999999999999999999999999999999999999999999887 78899999999999988
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHHH
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 314 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~ 314 (475)
.+... .... ...+...|+..++ |. ......++.||+|||+++.|+++++| ||+..++ +|+.++|.
T Consensus 191 ~~~~~-~~~~-~~~~~~~lL~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~ 257 (357)
T 3d8b_A 191 QRGDG-EHES-SRRIKTEFLVQLD--------GA-TTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARK 257 (357)
T ss_dssp C-------CH-HHHHHHHHHHHHH--------C-----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred cCCCC-cchH-HHHHHHHHHHHHh--------cc-cccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHH
Confidence 75432 2222 2333344444333 11 11235689999999999999999999 9998777 69999999
Q ss_pred HHHHhhcCCC--CCChHHHH---HHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcc
Q 011914 315 GVCSGIFRTD--NVPKEDIV---KLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389 (475)
Q Consensus 315 ~Il~~~l~~~--~v~~~~l~---~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~~~~ 389 (475)
+|++.++... .++.+.+. +.+.+|+++++. .++..+...++++ +..... +.+.. -....+
T Consensus 258 ~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~---~l~~~a~~~~ir~----l~~~~~--~~~~~------~~~~~i 322 (357)
T 3d8b_A 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMT---QLCREASLGPIRS----LQTADI--ATITP------DQVRPI 322 (357)
T ss_dssp HHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHH---HHHHHHHTHHHHH----CCC------------------CCCB
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHH----hhhhhh--ccccc------cccCCc
Confidence 9999888654 35555444 445566666665 6666655555543 210000 00000 112346
Q ss_pred cHHHHHHHHh---hhhhhHHHHHHHHHHHHHh
Q 011914 390 TLDKLLEYGR---MLVQEQENVKRVQLADKYL 418 (475)
Q Consensus 390 t~e~ll~~~~---~lv~eqe~v~~~~l~~~~~ 418 (475)
+.+++.++.. ..+...+...++.|.+.|-
T Consensus 323 ~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g 354 (357)
T 3d8b_A 323 AYIDFENAFRTVRPSVSPKDLELYENWNKTFG 354 (357)
T ss_dssp CHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 6666655544 3455556666777777763
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.92 E-value=1.8e-24 Score=230.88 Aligned_cols=188 Identities=23% Similarity=0.313 Sum_probs=154.6
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+...|.++|||||||||||++|++||++++.+|+.++++.+.+.+.|+.+..++.+|..|. ...|++|||||||.+
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~----~~~p~iLfLDEId~l 309 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPAIIFIDELDAI 309 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHH----HTCSEEEEEESHHHH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHH----hcCCcEEEecchhhh
Confidence 5678899999999999999999999999999999999999999999999999999999987 889999999999999
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 312 (475)
.+++.. .... ....+...|+.+++ +. ....++.||+|||+++.|+++++|+|||+..++ .|+.++
T Consensus 310 ~~~~~~-~~~~-~~~~~~~~LL~~ld--------~~---~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 310 APKREK-THGE-VERRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp CBCTTS-CCCH-HHHHHHHHHHHHHH--------HS---CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred cccccc-ccch-HHHHHHHHHHHHhh--------cc---ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 987653 2222 23445555666554 11 335679999999999999999999999999888 699999
Q ss_pred HHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHH
Q 011914 313 RIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 362 (475)
Q Consensus 313 R~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i 362 (475)
|.+||+.++... .++.+.++..+.+|+++++. +++.++...++++..
T Consensus 377 R~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~---~L~~~A~~~a~r~~~ 427 (489)
T 3hu3_A 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA---ALCSEAALQAIRKKM 427 (489)
T ss_dssp HHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHH---HHHHHHHHHHHHhcc
Confidence 999999888753 34556777777888877776 777777666666543
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=223.76 Aligned_cols=229 Identities=20% Similarity=0.277 Sum_probs=147.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
.++.++|||||||||||++|++||++++.+|+.++++.+.+.+.|+.+..++.+|..+. ...|+||||||||.++.
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR----ELQPSIIFIDQVDSLLC 221 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHH----HSSSEEEEEETGGGGC-
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHH----hcCCeEEEEECchhhcc
Confidence 45689999999999999999999999999999999999999999999999999999887 88999999999999987
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHHH
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 314 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~ 314 (475)
.+... ......+.. ..|+..++ |. ......+++||+|||+++.|+++++| ||+..++ .|+.++|.
T Consensus 222 ~~~~~-~~~~~~~~~-~~ll~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~ 288 (389)
T 3vfd_A 222 ERREG-EHDASRRLK-TEFLIEFD--------GV-QSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288 (389)
T ss_dssp --------CTHHHHH-HHHHHHHH--------HH-C-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred cCCCc-cchHHHHHH-HHHHHHhh--------cc-cccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHH
Confidence 65432 222233333 33443232 21 11235679999999999999999999 9987777 69999999
Q ss_pred HHHHhhcCCC--CCChHHHHHH---HhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcc
Q 011914 315 GVCSGIFRTD--NVPKEDIVKL---VDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389 (475)
Q Consensus 315 ~Il~~~l~~~--~v~~~~l~~l---~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~~~~ 389 (475)
+||+.++... .++.+.+..+ +.+|++.++. .++..+...++++ +....+ +.+. .-....+
T Consensus 289 ~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~---~L~~~a~~~~~re----l~~~~~-~~~~-------~~~~~~i 353 (389)
T 3vfd_A 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT---ALAKDAALGPIRE----LKPEQV-KNMS-------ASEMRNI 353 (389)
T ss_dssp HHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH---HHHHHHTTHHHHT----SCCC----CCS-------SSCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh----hhhhhh-hccc-------hhhcCCc
Confidence 9999988764 3555555444 4555555554 5555555554443 211111 1110 1122356
Q ss_pred cHHHHHHHHhh---hhhhHHHHHHHHHHHHH
Q 011914 390 TLDKLLEYGRM---LVQEQENVKRVQLADKY 417 (475)
Q Consensus 390 t~e~ll~~~~~---lv~eqe~v~~~~l~~~~ 417 (475)
+.+++..+... .+..+....++++.+.|
T Consensus 354 ~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~ 384 (389)
T 3vfd_A 354 RLSDFTESLKKIKRSVSPQTLEAYIRWNKDF 384 (389)
T ss_dssp CHHHHHHHHHHCCCSSCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 77777666554 33444444555555555
No 23
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.91 E-value=1.3e-24 Score=232.26 Aligned_cols=182 Identities=20% Similarity=0.282 Sum_probs=140.0
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.+.+.|+++||+||||||||+||++||++++.+++.++++.+...+.|...+.++.+|+.+. ...|+|+||||||.
T Consensus 59 lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~----~~~p~il~IDEId~ 134 (499)
T 2dhr_A 59 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK----RHAPCIVFIDEIDA 134 (499)
T ss_dssp TSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS----SSSSCEEEEECGGG
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHH----hcCCCEEEEehHHH
Confidence 35678999999999999999999999999999999999999999999999899999999775 67899999999999
Q ss_pred cccCCCCCc--ccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 234 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 234 l~~~r~~~~--~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
+...+.... ......+.++..| . +|+|. .....+++|++||+++.||++++|+|||++.+. .|+
T Consensus 135 l~~~r~~~~~~~~~e~~~~l~~LL-~--------~Ldg~---~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd 202 (499)
T 2dhr_A 135 VGRKRGSGVGGGNDEREQTLNQLL-V--------EMDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202 (499)
T ss_dssp TCCCSSSSTTTSSHHHHHHHHHHH-H--------HGGGC---CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCC
T ss_pred HHHhhccCcCCCcHHHHHHHHHHH-H--------Hhccc---ccCccEEEEEecCChhhcCcccccccccceEEecCCCC
Confidence 987654211 1111123333333 2 45554 445678899999999999999999999999988 599
Q ss_pred HHHHHHHHHhhcCCCCC----ChHHHHHHHhcCCCCchhhHHHHHHHhh
Q 011914 310 REDRIGVCSGIFRTDNV----PKEDIVKLVDTFPGQSIDFFGALRARVY 354 (475)
Q Consensus 310 ~eeR~~Il~~~l~~~~v----~~~~l~~l~~~~~g~~i~f~gal~~~~~ 354 (475)
.++|.+||+.+++...+ +...++..+.+|+|+++. +++.++.
T Consensus 203 ~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~---~lv~~Aa 248 (499)
T 2dhr_A 203 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE---NLLNEAA 248 (499)
T ss_dssp HHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHH---HHHHHHH
Confidence 99999999988875433 344555555555555555 4444443
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=1.2e-26 Score=261.08 Aligned_cols=192 Identities=21% Similarity=0.345 Sum_probs=155.2
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
++.++.++|||||||||||++|+++|++++.+++.++++++.++|+|+.++.++.+|+.|+ ...||||||||||++
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l 582 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR----QAAPCVLFFDELDSI 582 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHH----HHCSBCCCCSSHHHH
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHH----hcCCeEEEEEChhhh
Confidence 4567889999999999999999999999999999999999999999999999999999998 778999999999999
Q ss_pred ccCCCCCccc-chhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 235 AGRMGGTTQY-TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 235 ~~~r~~~~~~-~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
+..+.+.... ......+...|++ .|++. ....+++||+|||+++.||++++|||||++.++ .|+.+
T Consensus 583 ~~~r~~~~~~~~~~~~~v~~~LL~--------~ld~~---~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~ 651 (806)
T 1ypw_A 583 AKARGGNIGDGGGAADRVINQILT--------EMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651 (806)
T ss_dssp CCTTTTCCSHHHHHHHHHHHHHHT--------TCC---------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCS
T ss_pred hhhccCCCCCcchhHHHHHHHHHH--------HHhcc---cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHH
Confidence 8877542221 1223344445554 55555 456789999999999999999999999998888 59999
Q ss_pred HHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011914 312 DRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 364 (475)
Q Consensus 312 eR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~ 364 (475)
+|.+||+.++... +++.+.+++.+.+|+|+++. +++..+...++++.++.
T Consensus 652 ~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~---~l~~~a~~~a~~~~~~~ 705 (806)
T 1ypw_A 652 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRESIES 705 (806)
T ss_dssp HHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHH---HHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHH---HHHHHHHHHHHHHHHHH
Confidence 9999999998753 45566788888999999988 88888888887765543
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=5.6e-24 Score=210.43 Aligned_cols=230 Identities=19% Similarity=0.268 Sum_probs=154.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
.++.++||+||||||||++|+++|++++.+|+.++++.+.+.+.|+.++.++.+|..+. ...|+||||||+|.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR----HMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHH----HTCSEEEEEETGGGTSB
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHH----HcCCcEEEeccHHHhcc
Confidence 45789999999999999999999999999999999999999999999999999999887 78999999999999987
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHHH
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 314 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~ 314 (475)
.+... ......+... .|+..++ .+.. .....++.||+|||+++.++++++| ||+..++ +|+.++|.
T Consensus 128 ~~~~~-~~~~~~~~~~-~ll~~l~-----~~~~---~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~ 195 (297)
T 3b9p_A 128 ERSSS-EHEASRRLKT-EFLVEFD-----GLPG---NPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE 195 (297)
T ss_dssp CC------CCSHHHHH-HHHHHHH-----HCC---------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHH
T ss_pred ccccC-cchHHHHHHH-HHHHHHh-----cccc---cCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHH
Confidence 75421 2222233333 3433333 1111 1223678999999999999999999 9988877 69999999
Q ss_pred HHHHhhcCCC--CCChHHHH---HHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcc
Q 011914 315 GVCSGIFRTD--NVPKEDIV---KLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389 (475)
Q Consensus 315 ~Il~~~l~~~--~v~~~~l~---~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~~~~ 389 (475)
.|++.++... .++.+.+. ..+.+|+++++. +++..+...++++.... . .+.+. .-....+
T Consensus 196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~---~l~~~a~~~a~r~~~~~----~-~~~~~-------~~~~~~i 260 (297)
T 3b9p_A 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLT---ALAKDAALEPIRELNVE----Q-VKCLD-------ISAMRAI 260 (297)
T ss_dssp HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHH---HHHHHHTTHHHHTCC--------------------CCCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhh----h-ccccc-------ccccCCc
Confidence 9999888653 34555444 445566655555 56666555555432111 0 00000 0112357
Q ss_pred cHHHHHHHHhhh---hhhHHHHHHHHHHHHH
Q 011914 390 TLDKLLEYGRML---VQEQENVKRVQLADKY 417 (475)
Q Consensus 390 t~e~ll~~~~~l---v~eqe~v~~~~l~~~~ 417 (475)
+.+++..+.... +..++...+++|.+.|
T Consensus 261 ~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~ 291 (297)
T 3b9p_A 261 TEQDFHSSLKRIRRSVAPQSLNSYEKWSQDY 291 (297)
T ss_dssp CHHHHHHHTTSCCCSSCHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 788887775543 3344455555555555
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.90 E-value=2.1e-23 Score=202.18 Aligned_cols=181 Identities=21% Similarity=0.298 Sum_probs=133.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+...|+|++|+||||||||++++++++.++..++.+++..+...+.++..+.++.+|+.+. ...|+++||||+|.+
T Consensus 45 ~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~~Deid~l 120 (254)
T 1ixz_A 45 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK----RHAPCIVFIDEIDAV 120 (254)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHT----TSSSEEEEEETHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHH----hcCCeEEEehhhhhh
Confidence 5677889999999999999999999999999999999988887888888888999999875 678999999999998
Q ss_pred ccCCCCCc--ccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 235 AGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 235 ~~~r~~~~--~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
...+.... ......+.+.. ++. +++|. .....++++++||+|+.||++++|++||++.+. .|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~-ll~--------~l~g~---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~ 188 (254)
T 1ixz_A 121 GRKRGSGVGGGNDEREQTLNQ-LLV--------EMDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 188 (254)
T ss_dssp HC---------CHHHHHHHHH-HHH--------HHHTC---CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCH
T ss_pred hcccCccccccchHHHHHHHH-HHH--------HHhCC---CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCH
Confidence 76543210 11111233333 333 33333 334567888899999999999999999999988 5999
Q ss_pred HHHHHHHHhhcCCCC----CChHHHHHHHhcCCCCchhhHHHHHHHhh
Q 011914 311 EDRIGVCSGIFRTDN----VPKEDIVKLVDTFPGQSIDFFGALRARVY 354 (475)
Q Consensus 311 eeR~~Il~~~l~~~~----v~~~~l~~l~~~~~g~~i~f~gal~~~~~ 354 (475)
++|.+||+.+..... ++...++..+.+|+|+++. +++.++.
T Consensus 189 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~---~~~~~a~ 233 (254)
T 1ixz_A 189 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE---NLLNEAA 233 (254)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHH
Confidence 999999998876533 3344555555555555554 4444443
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.89 E-value=6.6e-25 Score=213.97 Aligned_cols=175 Identities=20% Similarity=0.291 Sum_probs=129.5
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+.+.|+++|||||||||||++|+++|++++.+++.++++.+.+.+.|..+..++.+|..+. ...|+||||||+|.+
T Consensus 40 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~iDEid~l 115 (268)
T 2r62_A 40 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAK----KQAPSIIFIDEIDAI 115 (268)
T ss_dssp SCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHH----HSCSCEEEESCGGGT
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHH----hcCCeEEEEeChhhh
Confidence 4577889999999999999999999999999999999999998898888888888999887 778999999999999
Q ss_pred ccCCCCCcc---cchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 235 AGRMGGTTQ---YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 235 ~~~r~~~~~---~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
...+..... .....+.+ ..|+. .+++. .....+++||+|||.++.||++++|+|||+..++ .|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~-~~ll~--------~l~~~--~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~ 184 (268)
T 2r62_A 116 GKSRAAGGVVSGNDEREQTL-NQLLA--------EMDGF--GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184 (268)
T ss_dssp TC----------CCCSCSST-TTTTT--------TTTCS--SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCC
T ss_pred cccccccccCCCchhHHHHH-HHHHH--------HhhCc--ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcC
Confidence 876421110 00001111 12222 33332 1234568999999999999999999999998877 699
Q ss_pred HHHHHHHHHhhcCCCC----CChHHHHHHHhcCCCCchh
Q 011914 310 REDRIGVCSGIFRTDN----VPKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 310 ~eeR~~Il~~~l~~~~----v~~~~l~~l~~~~~g~~i~ 344 (475)
.++|.+||+.++.... ++.+.++..+.+|+|.++.
T Consensus 185 ~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~ 223 (268)
T 2r62_A 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLA 223 (268)
T ss_dssp TTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHH
Confidence 9999999998887533 3344555555555554443
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.88 E-value=2.6e-22 Score=197.60 Aligned_cols=174 Identities=21% Similarity=0.308 Sum_probs=129.7
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+...|++++|+||||||||+|+++|++.++..++.+++..+...+.++..+.++.+|+.+. ...|+++||||+|.+
T Consensus 69 ~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~iDeid~l 144 (278)
T 1iy2_A 69 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK----RHAPCIVFIDEIDAV 144 (278)
T ss_dssp TCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHH----TSCSEEEEEETHHHH
T ss_pred CCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHH----hcCCcEEehhhhHhh
Confidence 5677889999999999999999999999999999999988877788888888899999876 678999999999998
Q ss_pred ccCCCCCc--ccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 235 AGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 235 ~~~r~~~~--~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
...+.... ......+.+.. ++. +++|. .....++++++||+|+.||++++|++||++.+. .|+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-ll~--------~lsgg---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~ 212 (278)
T 1iy2_A 145 GRKRGSGVGGGNDEREQTLNQ-LLV--------EMDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 212 (278)
T ss_dssp HCC--------CHHHHHHHHH-HHH--------HHTTC---CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCH
T ss_pred hcccccccCCcchHHHHHHHH-HHH--------HHhCC---CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCH
Confidence 76543210 01111223333 322 34444 334567888899999999999999999999888 5999
Q ss_pred HHHHHHHHhhcCCCCC----ChHHHHHHHhcCCCCchh
Q 011914 311 EDRIGVCSGIFRTDNV----PKEDIVKLVDTFPGQSID 344 (475)
Q Consensus 311 eeR~~Il~~~l~~~~v----~~~~l~~l~~~~~g~~i~ 344 (475)
++|.+||+.++....+ +...++..+.+|+++++.
T Consensus 213 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 213 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 9999999988765433 344444444554444444
No 29
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=99.86 E-value=7e-22 Score=165.59 Aligned_cols=103 Identities=86% Similarity=1.362 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHhhcCCCCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCC
Q 011914 308 PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 387 (475)
Q Consensus 308 P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~~f~~~ 387 (475)
-++++|..|++.++..++++.+++.+|++.|++|.|+|||||++++|+++|++|+..+|.++++++++|+++++|+|++|
T Consensus 5 ~treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~vG~e~ig~~Lvns~e~~P~F~~P 84 (107)
T 3thg_A 5 FTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQP 84 (107)
T ss_dssp CCHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred ccHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHhCHHHHhHHHHcCCCCCCCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhhhhhhHHHHHH
Q 011914 388 KMTLDKLLEYGRMLVQEQENVKR 410 (475)
Q Consensus 388 ~~t~e~ll~~~~~lv~eqe~v~~ 410 (475)
++|+++|+++|+++++||++|++
T Consensus 85 ~~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 85 KMTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCCHHHHHHHHHHHHTTC-----
T ss_pred cCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999974
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.84 E-value=2.6e-20 Score=209.56 Aligned_cols=188 Identities=23% Similarity=0.308 Sum_probs=151.4
Q ss_pred CCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..+++++.++||+||||||||++|++||++++.+++.+++.++.+.+.|+.++.++.+|..+. ...|++|||||+|
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid 307 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPAIIFIDELD 307 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHH----HHCSEEEEEESGG
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHH----hcCCcEEEeccHH
Confidence 346788999999999999999999999999999999999999999999999999999999987 7789999999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 310 (475)
.++..+.. .... ..+.+...|+.+++ |. ....++.+|+|||+++.+|++++|+|||+..+. .|+.
T Consensus 308 ~l~~~~~~-~~~~-~~~~~~~~Ll~ll~--------g~---~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 374 (806)
T 1ypw_A 308 AIAPKREK-THGE-VERRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp GTSCTTSC-CCSH-HHHHHHHHHHHHHH--------SS---CTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCH
T ss_pred Hhhhcccc-ccch-HHHHHHHHHHHHhh--------hh---cccccEEEecccCCchhcCHHHhcccccccccccCCCCH
Confidence 99987653 2222 23445556666554 32 334678999999999999999999999999887 6999
Q ss_pred HHHHHHHHhhcCCC----CCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 311 EDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 311 eeR~~Il~~~l~~~----~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
++|.+||+.+.... ..+...++..+.+|+++++. +++..+...++++
T Consensus 375 ~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~---~l~~ea~~~a~r~ 425 (806)
T 1ypw_A 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA---ALCSEAALQAIRK 425 (806)
T ss_dssp HHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHH---HHHHHHHHHHHhh
Confidence 99999999887653 34455677777777777665 5665555555443
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.81 E-value=7.3e-22 Score=208.50 Aligned_cols=155 Identities=8% Similarity=0.053 Sum_probs=109.8
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhC--CceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg--~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
+..+|+++|||||||||||++|+++|++++ .+|+.++++++.+++.|++++ +++.|+.|.. .+...||||||||+|
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEid 136 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEVT 136 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEechh
Confidence 456779999999999999999999999999 999999999999999999988 8999998710 117889999999999
Q ss_pred ccccCCCCCcccchh---h---------------HHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccc
Q 011914 233 AGAGRMGGTTQYTVN---N---------------QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294 (475)
Q Consensus 233 al~~~r~~~~~~~~~---~---------------~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~a 294 (475)
++++++......... . +.....+..+.. .+. .....++|++|||+++.+|++
T Consensus 137 ~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~-------~~~---~~~~~v~i~attn~~~~ld~a 206 (456)
T 2c9o_A 137 ELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK-------ERV---EAGDVIYIEANSGAVKRQGRC 206 (456)
T ss_dssp EEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH-------TTC---CTTEEEEEETTTCCEEEEEEE
T ss_pred hcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh-------ccC---CCCCEEEEEcCCCCcccCChh
Confidence 999876532110000 0 001111111111 011 223445556799999999999
Q ss_pred cccCCCceE----EEecCC--HHHHHHHHHhhc
Q 011914 295 LIRDGRMEK----FYWAPT--REDRIGVCSGIF 321 (475)
Q Consensus 295 LlR~GRfd~----~i~~P~--~eeR~~Il~~~l 321 (475)
++|+||||+ .+..|+ .++|.+|++.+.
T Consensus 207 ~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~ 239 (456)
T 2c9o_A 207 DTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT 239 (456)
T ss_dssp TTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE
T ss_pred hcCCcccCcceeEecCCCchhHHHHHHHHHHHH
Confidence 999999999 333563 467888876554
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=1.2e-18 Score=170.41 Aligned_cols=165 Identities=11% Similarity=0.153 Sum_probs=117.8
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChH----HHHHHHHHHHHHHHHhCCceeEEec
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKMCCLFIN 229 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e----~~Ir~~f~~A~~~~~~~~p~ILfID 229 (475)
.+...+.++|||||||||||++|+++|++++.+|+.++++. .+.|..+ ..++.+|..+. ...++|||||
T Consensus 59 ~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iD 131 (272)
T 1d2n_A 59 SDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAY----KSQLSCVVVD 131 (272)
T ss_dssp CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHHH----TSSEEEEEEC
T ss_pred cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHHH----hcCCcEEEEE
Confidence 34567889999999999999999999999999999998774 3344433 56777787765 6889999999
Q ss_pred cccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcc-ccccCCCceEEEecC
Q 011914 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAP 308 (475)
Q Consensus 230 EiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~-aLlR~GRfd~~i~~P 308 (475)
|+|.+++.+..... ....+...|..+++ + ......++.||+|||.++.+++ .+++ ||+..+.+|
T Consensus 132 Eid~l~~~~~~~~~---~~~~~l~~L~~~~~--------~--~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p 196 (272)
T 1d2n_A 132 DIERLLDYVPIGPR---FSNLVLQALLVLLK--------K--APPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVP 196 (272)
T ss_dssp CHHHHTTCBTTTTB---CCHHHHHHHHHHTT--------C--CCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECC
T ss_pred ChhhhhccCCCChh---HHHHHHHHHHHHhc--------C--ccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCC
Confidence 99999776432111 12344455555444 1 1123567889999999998988 5666 999999988
Q ss_pred CHHHHHHHHHhhcCCCCCChHHHHHHHhcCCC
Q 011914 309 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340 (475)
Q Consensus 309 ~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~~g 340 (475)
...+|.+|...+.....++.+.+..++....|
T Consensus 197 ~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 197 NIATGEQLLEALELLGNFKDKERTTIAQQVKG 228 (272)
T ss_dssp CEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHhcCCCCHHHHHHHHHHhcC
Confidence 77776666655444445666666666655443
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=1.1e-17 Score=165.75 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=119.6
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhC-------CceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEE
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg-------~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILf 227 (475)
..+++..+||+||||||||++|+++|+.++ .+++.++++.+.+.+.|.....++.+|..+ .++|||
T Consensus 63 ~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~ 135 (309)
T 3syl_A 63 HETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLF 135 (309)
T ss_dssp SSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEE
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEE
Confidence 345667899999999999999999999973 389999999999999999999888888865 378999
Q ss_pred eccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccCCCce
Q 011914 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRME 302 (475)
Q Consensus 228 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~GRfd 302 (475)
|||+|.++..+.+ ......+...|+.+++ ....++.||+|||... .++|+|++ ||+
T Consensus 136 iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~ 196 (309)
T 3syl_A 136 IDEAYYLYRPDNE----RDYGQEAIEILLQVME-------------NNRDDLVVILAGYADRMENFFQSNPGFRS--RIA 196 (309)
T ss_dssp EETGGGSCCCC-------CCTHHHHHHHHHHHH-------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH--HEE
T ss_pred EEChhhhccCCCc----ccccHHHHHHHHHHHh-------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH--hCC
Confidence 9999999865432 1112345556666555 3356788999998654 35799999 998
Q ss_pred EEEe--cCCHHHHHHHHHhhcCCC--CCChHHHHHHHh
Q 011914 303 KFYW--APTREDRIGVCSGIFRTD--NVPKEDIVKLVD 336 (475)
Q Consensus 303 ~~i~--~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~ 336 (475)
..+. .|+.+++.+|++.++... .++.+.+..+..
T Consensus 197 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~ 234 (309)
T 3syl_A 197 HHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA 234 (309)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 7777 589999999999888754 355555555544
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.72 E-value=6.3e-17 Score=174.61 Aligned_cols=167 Identities=19% Similarity=0.288 Sum_probs=111.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCceeEEe
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFI 228 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s---------~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfI 228 (475)
++.++||+||||||||++|++||+.++.++..++++.+.. .++|.....+.+.|..+. ...| ||||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~----~~~~-vl~l 181 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAG----KLNP-VFLL 181 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTC----SSSE-EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhh----ccCC-EEEE
Confidence 4578999999999999999999999999999998876533 456666666777777653 3445 9999
Q ss_pred ccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcccc--CCCCCceEEEecCCCCCCccccccCCCceEEEe
Q 011914 229 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 306 (475)
Q Consensus 229 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~--~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~ 306 (475)
||||++...+.+. ....|+++++......+...+.. ....++.||+|||+++.|+++|++ ||+.+.+
T Consensus 182 DEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~vi~~ 250 (543)
T 3m6a_A 182 DEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEIINI 250 (543)
T ss_dssp EESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEEEEC
T ss_pred hhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcceeee
Confidence 9999997654321 23456676664333322222111 123688999999999999999999 9975433
Q ss_pred -cCCHHHHHHHHHhhcCC------------CCCChHHHHHHHhcCCC
Q 011914 307 -APTREDRIGVCSGIFRT------------DNVPKEDIVKLVDTFPG 340 (475)
Q Consensus 307 -~P~~eeR~~Il~~~l~~------------~~v~~~~l~~l~~~~~g 340 (475)
.|+.+++.+|++.++.. ..++.+.+..++..|++
T Consensus 251 ~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~ 297 (543)
T 3m6a_A 251 AGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR 297 (543)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence 59999999999987621 23467788888887764
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.66 E-value=4.4e-16 Score=153.29 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=110.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc-CCCCCh-HHHHHHHHHHHHHHHH-hCCceeEEeccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGEP-AKLIRQRYREAADIIK-KGKMCCLFINDLDA 233 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s-~~~Ge~-e~~Ir~~f~~A~~~~~-~~~p~ILfIDEiDa 233 (475)
..|.++||+||||||||++|+++|+.++.+++.++++.+.. .+.|.. ...++.++..+...++ ...++||||||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 35778999999999999999999999999999999988765 565532 4556666664311111 23488999999999
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEe----cCCCCCCccccccCCCceEEEe--c
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYW--A 307 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~T----TN~~~~Ld~aLlR~GRfd~~i~--~ 307 (475)
+...... ...+.....+...|+.++++.......+ .....++.+|+| ++.+..++++|++ ||+..+. .
T Consensus 128 l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~ 201 (310)
T 1ofh_A 128 ICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHG---MVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA 201 (310)
T ss_dssp GSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTE---EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred cCccccc-cccchhHHHHHHHHHHHhcCCeEecccc---cccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence 9876432 2223334455667777666211111111 123457888888 5678899999998 9997666 4
Q ss_pred CCHHHHHHHHHh
Q 011914 308 PTREDRIGVCSG 319 (475)
Q Consensus 308 P~~eeR~~Il~~ 319 (475)
|+.+++.+|++.
T Consensus 202 ~~~~~~~~il~~ 213 (310)
T 1ofh_A 202 LSAADFERILTE 213 (310)
T ss_dssp CCHHHHHHHHHS
T ss_pred cCHHHHHHHHHh
Confidence 899999999984
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.65 E-value=9.1e-17 Score=169.06 Aligned_cols=135 Identities=12% Similarity=0.070 Sum_probs=60.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcccc-CCCCC-hHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s-~~~Ge-~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
.+|+++||+||||||||++|+++|+.++.+|+.++++.+.+ +|+|+ .+..++.+|..|..+ +++||+|.+
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~--------~~~De~d~~ 119 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL--------VRQQEIAKN 119 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH--------HHHHHHHSC
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc--------chhhhhhhh
Confidence 35789999999999999999999999999999999999888 69995 799999999988733 348999877
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEe-cCCCCCCccccccCCCceEEEe--cCCHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT-GNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~T-TN~~~~Ld~aLlR~GRfd~~i~--~P~~e 311 (475)
.... ..... +++...|+. +|||. .....+ +++ ||+++.||++|+|+||||+.|+ +|+..
T Consensus 120 ~~~~----~~~~e-~rvl~~LL~--------~~dg~---~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 120 RARA----EDVAE-ERILDALLP--------PAKNQ---WGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hccc----hhhHH-HHHHHHHHH--------Hhhcc---cccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 5432 12222 344455554 56666 222333 555 9999999999999999999999 58777
Q ss_pred -HHHHHH
Q 011914 312 -DRIGVC 317 (475)
Q Consensus 312 -eR~~Il 317 (475)
.|.+|+
T Consensus 182 ~~~~ei~ 188 (444)
T 1g41_A 182 SMGVEIM 188 (444)
T ss_dssp -------
T ss_pred cchhhhh
Confidence 677775
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.63 E-value=9e-15 Score=148.18 Aligned_cols=154 Identities=14% Similarity=0.070 Sum_probs=102.9
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCC--ceEEEecCccccCCCC--------------------------------
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAG-------------------------------- 201 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~--~~i~vs~s~l~s~~~G-------------------------------- 201 (475)
..++.++||+||||||||++|+++|++++. +++.+++..+.+.+.+
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~ 146 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDV 146 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhh
Confidence 344689999999999999999999999875 7888887664443333
Q ss_pred -----------------ChHHHHHHHHHHHHHHHH-hC----CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhh
Q 011914 202 -----------------EPAKLIRQRYREAADIIK-KG----KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 259 (475)
Q Consensus 202 -----------------e~e~~Ir~~f~~A~~~~~-~~----~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~ 259 (475)
+....++..+..+..... .+ .|+||||||+|.+.. .....|+.++
T Consensus 147 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-------------~~~~~L~~~l 213 (368)
T 3uk6_A 147 INSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-------------ESFSFLNRAL 213 (368)
T ss_dssp HTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------------HHHHHHHHHT
T ss_pred hhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------------HHHHHHHHHh
Confidence 333455666665543222 22 378999999997742 2334555544
Q ss_pred cCCCcccCCCccccCCCCCceEEEec-----------CCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCC--CC
Q 011914 260 DNPTNVQLPGMYNQEENPRVPIIVTG-----------NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT--DN 325 (475)
Q Consensus 260 d~~~~v~ldg~~~~~~~~~V~VI~TT-----------N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~--~~ 325 (475)
+ .....+++++|. |.+..++++|++ ||..+.+ .|+.+++.+|++..+.. ..
T Consensus 214 e-------------~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 214 E-------------SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp T-------------CTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred h-------------CcCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4 222334333333 357889999999 8887544 58999999999988764 34
Q ss_pred CChHHHHHHHhc
Q 011914 326 VPKEDIVKLVDT 337 (475)
Q Consensus 326 v~~~~l~~l~~~ 337 (475)
++.+.+..++..
T Consensus 279 ~~~~~l~~l~~~ 290 (368)
T 3uk6_A 279 MSEDAYTVLTRI 290 (368)
T ss_dssp BCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 556666555554
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=3.9e-16 Score=141.15 Aligned_cols=136 Identities=20% Similarity=0.209 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 224 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~--s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ 224 (475)
..+..++|+||||||||++|+++++++ +.+++.+++..+. ..+.|.....++.++.... +...++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 117 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNV 117 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHH---HSTTTE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHh---hcCCCe
Confidence 346789999999999999999999996 7888888887665 2344455556666666442 256789
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccCC
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDG 299 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~G 299 (475)
||||||+|.+...+..... ..+...|..+++ ..++.+|+|||.+. .+++++++
T Consensus 118 vl~iDe~~~l~~~~~~~~~-----~~~~~~l~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~-- 175 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGA-----MDAGNMLKPALA---------------RGELHCVGATTLDEYRQYIEKDAALER-- 175 (195)
T ss_dssp EEEEETGGGGTT------C-----CCCHHHHHHHHH---------------TTSCCEEEEECHHHHHHHTTTCHHHHT--
T ss_pred EEEEeCHHHHhccCcccch-----HHHHHHHHHhhc---------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--
Confidence 9999999999765321111 112233434333 35678999998876 78999999
Q ss_pred CceEEEe-cCCHHHHHHHH
Q 011914 300 RMEKFYW-APTREDRIGVC 317 (475)
Q Consensus 300 Rfd~~i~-~P~~eeR~~Il 317 (475)
||+.+.. .|+.++|.+|+
T Consensus 176 r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TEEEEECCCCCHHHHHTTC
T ss_pred HhceeecCCCCHHHHHHHh
Confidence 9985433 69999998876
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.60 E-value=3.1e-16 Score=160.00 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=109.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccC-CCCCh-HHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~-~~Ge~-e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
.++.++||+||||||||++|++||+.++.+|+.++++.+... |.|.. ...++.+|..+...++...++||||||+|++
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l 128 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence 356889999999999999999999999999999999887643 66665 5566777776522222456899999999999
Q ss_pred ccCCCCC-cccchhhHHHHHHHHhhhcCCCcccCC---Cc------cccCCCCCceEEEecCCC----------CC----
Q 011914 235 AGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLP---GM------YNQEENPRVPIIVTGNDF----------ST---- 290 (475)
Q Consensus 235 ~~~r~~~-~~~~~~~~~v~~~Ll~l~d~~~~v~ld---g~------~~~~~~~~V~VI~TTN~~----------~~---- 290 (475)
...+.+. .......+.+...|+.+++ ...+.+. |. ...-...++++|+|+|.. ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~ 207 (363)
T 3hws_A 129 SRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGI 207 (363)
T ss_dssp CCCSSCC---CHHHHHHHHHHHHHHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC--
T ss_pred cccccccccccccchHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccC
Confidence 8765432 1222334457778888777 2222221 10 001234566677776642 11
Q ss_pred -------------------------------CccccccCCCceEEEe--cCCHHHHHHHHHh
Q 011914 291 -------------------------------LYAPLIRDGRMEKFYW--APTREDRIGVCSG 319 (475)
Q Consensus 291 -------------------------------Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~ 319 (475)
+.|+|+. ||+.++. .|+.+++.+|+..
T Consensus 208 gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 208 GFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ----------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 6788888 9999986 4899999999876
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.57 E-value=3.6e-14 Score=142.40 Aligned_cols=158 Identities=13% Similarity=0.078 Sum_probs=110.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
..+..+||+||||||||++|+++|+.++.+|+.++++.+. ....+...+.. ...+++|||||||.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~------~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN------LSEGDILFIDEIHRLSP 120 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT------CCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh------ccCCCEEEEechhhcCH
Confidence 4566799999999999999999999999999999987653 12333333331 46789999999998742
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCc-----cccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-----YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~-----~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
.+...|+..+++.....+.+. ......+++.+|+|||+...++++|++ ||+..+. .|+
T Consensus 121 -------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~ 185 (338)
T 3pfi_A 121 -------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYK 185 (338)
T ss_dssp -------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred -------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcC
Confidence 223444444442211111100 000112368899999999999999999 9987777 589
Q ss_pred HHHHHHHHHhhcCCCC--CChHHHHHHHhcCCCC
Q 011914 310 REDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQ 341 (475)
Q Consensus 310 ~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~g~ 341 (475)
.+++..|++.++...+ ++.+.+..++..++|.
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~ 219 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRST 219 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC
Confidence 9999999998876543 5667777777754443
No 41
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.55 E-value=6.1e-14 Score=138.60 Aligned_cols=182 Identities=13% Similarity=0.113 Sum_probs=115.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCC------------CCChHHHHHHHHHHHHHHHHhCCc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------------AGEPAKLIRQRYREAADIIKKGKM 223 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~------------~Ge~e~~Ir~~f~~A~~~~~~~~p 223 (475)
+..+||+||||||||++|+++|+.+ +.+++.++++.+.... .|.... ..+..+ ++...+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~~---~~~~~~ 120 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLTEA---VRRRPY 120 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHHHH---HHHCSS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHHHH---HHhCCC
Confidence 3579999999999999999999997 4568889887654321 111100 112222 124556
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC----------------
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND---------------- 287 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~---------------- 287 (475)
+||||||+|.+.. .+...|+.++++.....-.+. .....+++||+|||.
T Consensus 121 ~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~--~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~ 185 (311)
T 4fcw_A 121 SVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGR--TVDFRNTVIIMTSNLGSPLILEGLQKGWPYE 185 (311)
T ss_dssp EEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSC--EEECTTEEEEEEESTTHHHHHTTTTSCCCSS
T ss_pred eEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCC--EEECCCcEEEEecccCHHHHHhhhcccccHH
Confidence 8999999997732 234556665552221111110 122357779999999
Q ss_pred ----------CCCCccccccCCCceEEEe--cCCHHHHHHHHHhhcCC-----------CCCChHHHHHHHh-cC--CCC
Q 011914 288 ----------FSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT-----------DNVPKEDIVKLVD-TF--PGQ 341 (475)
Q Consensus 288 ----------~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~-----------~~v~~~~l~~l~~-~~--~g~ 341 (475)
...++++|++ ||+..+. .|+.+++..|++.++.. ..++.+.+..++. .| +|.
T Consensus 186 ~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn 263 (311)
T 4fcw_A 186 RIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFG 263 (311)
T ss_dssp THHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTB
T ss_pred HHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCC
Confidence 5578889998 9987777 48999999999977653 2356667777776 44 333
Q ss_pred chhhHHHHHHHhhHHHHHHHHHH
Q 011914 342 SIDFFGALRARVYDDEVRKWISE 364 (475)
Q Consensus 342 ~i~f~gal~~~~~~~av~~~i~~ 364 (475)
.-+ .-.++.+++..++.+.+..
T Consensus 264 ~R~-L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 264 ARP-LRRVIQRELETPLAQKILA 285 (311)
T ss_dssp TTT-HHHHHHHHTHHHHHHHHHH
T ss_pred chh-HHHHHHHHHHHHHHHHHHh
Confidence 222 2255566666555555544
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.55 E-value=6e-14 Score=140.13 Aligned_cols=148 Identities=18% Similarity=0.320 Sum_probs=102.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGA 235 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~-~~~p~ILfIDEiDal~ 235 (475)
+.|..+|++||||||||++|+++|++++.+++.++++... ...++..+........ ...+.||||||+|.+.
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 5677899999999999999999999999999999987532 4455555544321111 2368999999999885
Q ss_pred cCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHH
Q 011914 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRI 314 (475)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~ 314 (475)
+. .....|+.+++ ....++.+|+|||++..++++|++ ||..+-+ .|+.++|.
T Consensus 119 ~~------------~~~~~L~~~le-------------~~~~~~~iI~~~n~~~~l~~~l~s--R~~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 119 LA------------ESQRHLRSFME-------------AYSSNCSIIITANNIDGIIKPLQS--RCRVITFGQPTDEDKI 171 (324)
T ss_dssp GH------------HHHHHHHHHHH-------------HHGGGCEEEEEESSGGGSCTTHHH--HSEEEECCCCCHHHHH
T ss_pred cH------------HHHHHHHHHHH-------------hCCCCcEEEEEeCCccccCHHHHh--hCcEEEeCCCCHHHHH
Confidence 21 12244555444 223567899999999999999999 8865433 58999987
Q ss_pred HHHHhhc-------CCC--CCCh-HHHHHHHhcC
Q 011914 315 GVCSGIF-------RTD--NVPK-EDIVKLVDTF 338 (475)
Q Consensus 315 ~Il~~~l-------~~~--~v~~-~~l~~l~~~~ 338 (475)
+|++.++ ... .++. +.+..++...
T Consensus 172 ~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 205 (324)
T 3u61_B 172 EMMKQMIRRLTEICKHEGIAIADMKVVAALVKKN 205 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhC
Confidence 7765433 222 3444 5566666553
No 43
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.3e-14 Score=144.94 Aligned_cols=137 Identities=11% Similarity=0.036 Sum_probs=96.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccccC----------------CCCChHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------------NAGEPAKLIRQR 210 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~s~----------------~~Ge~e~~Ir~~ 210 (475)
..|..++||||||||||++++.+++++ .+.++++++..+.+. ..++....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 567899999999999999999999998 456888888664332 124456667777
Q ss_pred HHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCC
Q 011914 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290 (475)
Q Consensus 211 f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~ 290 (475)
|.... -....++||||||+|.+. . + ..|..+++ |......++.||+++|..+.
T Consensus 123 f~~~~--~~~~~~~ii~lDE~d~l~-~-----q---------~~L~~l~~----------~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 123 ITNVP--KAKKRKTLILIQNPENLL-S-----E---------KILQYFEK----------WISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHSC--GGGSCEEEEEEECCSSSC-C-----T---------HHHHHHHH----------HHHCSSCCEEEEEECCSSCC
T ss_pred HHHhh--hccCCceEEEEecHHHhh-c-----c---------hHHHHHHh----------cccccCCcEEEEEEecCccc
Confidence 77531 015678999999999987 1 2 23333333 33345678999999999865
Q ss_pred ----CccccccCCCceE-EEe--cCCHHHHHHHHHhhcC
Q 011914 291 ----LYAPLIRDGRMEK-FYW--APTREDRIGVCSGIFR 322 (475)
Q Consensus 291 ----Ld~aLlR~GRfd~-~i~--~P~~eeR~~Il~~~l~ 322 (475)
|++++++ ||.. .|. .++.++..+|++..+.
T Consensus 176 ~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 4455566 7753 344 4799999999986654
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.52 E-value=2.5e-14 Score=129.31 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=86.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 224 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~--s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ 224 (475)
..+..++|+||||||||++|+++++++ +.+++.+++..+. ..+.|.....++.++..+. +...|.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 117 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQ---DAEGQV 117 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHH---HTTTSE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHH---hcCCce
Confidence 345789999999999999999999997 7788888776654 2234444556666666543 234789
Q ss_pred eEEeccccccccCCC-CCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccC
Q 011914 225 CLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRD 298 (475)
Q Consensus 225 ILfIDEiDal~~~r~-~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~ 298 (475)
||||||+|.+.+.+. ...+ ..+...|..+++ ..++.+|++||.+. .++++++|
T Consensus 118 vl~iDe~~~l~~~~~~~~~~-----~~~~~~l~~~~~---------------~~~~~ii~~~~~~~~~~~~~~~~~l~~- 176 (187)
T 2p65_A 118 VMFIDEIHTVVGAGAVAEGA-----LDAGNILKPMLA---------------RGELRCIGATTVSEYRQFIEKDKALER- 176 (187)
T ss_dssp EEEETTGGGGSSSSSSCTTS-----CCTHHHHHHHHH---------------TTCSCEEEEECHHHHHHHTTTCHHHHH-
T ss_pred EEEEeCHHHhcccccccccc-----hHHHHHHHHHHh---------------cCCeeEEEecCHHHHHHHHhccHHHHH-
Confidence 999999999975533 1111 122334444333 35678999999875 68999999
Q ss_pred CCceEE
Q 011914 299 GRMEKF 304 (475)
Q Consensus 299 GRfd~~ 304 (475)
||+.+
T Consensus 177 -R~~~i 181 (187)
T 2p65_A 177 -RFQQI 181 (187)
T ss_dssp -HEEEE
T ss_pred -hcCcc
Confidence 99963
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.52 E-value=8.5e-14 Score=146.83 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=105.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~ 239 (475)
..+|||||||||||++|++|++.++.+|+.+++... ..+.++.++..+........+.||||||||.+....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~- 122 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ- 122 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-
Confidence 689999999999999999999999999999986532 356788888888755556789999999999874431
Q ss_pred CCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEec--CCCCCCccccccCCCceEEEe-cCCHHHHHHH
Q 011914 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGV 316 (475)
Q Consensus 240 ~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT--N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~I 316 (475)
+ ..|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.+++..|
T Consensus 123 ---q---------~~LL~~le---------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 123 ---Q---------DAFLPHIE---------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp --------------CCHHHHH---------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHH
T ss_pred ---H---------HHHHHHHh---------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHH
Confidence 1 22444333 2446677755 555689999999 8876555 5899999999
Q ss_pred HHhhcCC---------CCCChHHHHHHHhcCCC
Q 011914 317 CSGIFRT---------DNVPKEDIVKLVDTFPG 340 (475)
Q Consensus 317 l~~~l~~---------~~v~~~~l~~l~~~~~g 340 (475)
++.++.. ..++.+.+..++....|
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G 206 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG 206 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC
Confidence 9988764 23566666666666443
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.52 E-value=4.5e-14 Score=141.41 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=102.2
Q ss_pred HHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCc
Q 011914 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223 (475)
Q Consensus 147 ~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p 223 (475)
++.+...++ ..+..++||||||||||++|+++++++ +.+++++++..+...+.+.........|... ...+
T Consensus 26 ~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 99 (324)
T 1l8q_A 26 VKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNM-----YKSV 99 (324)
T ss_dssp HHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHH-----HHTC
T ss_pred HHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHH-----hcCC
Confidence 444444443 356789999999999999999999998 8999999987664222111111111122221 2348
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC---CCccccccCCC
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGR 300 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~---~Ld~aLlR~GR 300 (475)
+||||||++.+..++. .+ +.+...+..+.+ ....+||+++|.+. .++++|++ |
T Consensus 100 ~vL~iDEi~~l~~~~~--~~-----~~l~~~l~~~~~---------------~~~~iii~~~~~~~~l~~l~~~L~s--R 155 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKER--TQ-----IEFFHIFNTLYL---------------LEKQIILASDRHPQKLDGVSDRLVS--R 155 (324)
T ss_dssp SEEEEECGGGGTTCHH--HH-----HHHHHHHHHHHH---------------TTCEEEEEESSCGGGCTTSCHHHHH--H
T ss_pred CEEEEcCcccccCChH--HH-----HHHHHHHHHHHH---------------CCCeEEEEecCChHHHHHhhhHhhh--c
Confidence 8999999998764311 11 122222222221 12344555556655 68999999 8
Q ss_pred ce--EEEec-CCHHHHHHHHHhhcCC--CCCChHHHHHHHhcC
Q 011914 301 ME--KFYWA-PTREDRIGVCSGIFRT--DNVPKEDIVKLVDTF 338 (475)
Q Consensus 301 fd--~~i~~-P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~ 338 (475)
|. ..+.+ |+.++|.+|++.++.. ..++.+.+..++...
T Consensus 156 ~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 156 FEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp HHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred ccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 85 45553 4899999999988763 456777777777776
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.52 E-value=5.7e-14 Score=148.77 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=97.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILf 227 (475)
.+.++||+||||||||++|+++|+.+ +.+++.++++ ..+.|+.+..++.+|..+. ...|+|||
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~----~~~~~iLf 272 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIR----QAGNIILF 272 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHH----TCCCCEEE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHH----hcCCeEEE
Confidence 34678999999999999999999996 7888888887 6778888888889999886 77899999
Q ss_pred eccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccCCCce
Q 011914 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRME 302 (475)
Q Consensus 228 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~GRfd 302 (475)
|| +. . .....|+..+. ...+.+|+|||... .++++|+| ||.
T Consensus 273 iD------~~-----~------~a~~~L~~~L~---------------~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~ 318 (468)
T 3pxg_A 273 ID------AA-----I------DASNILKPSLA---------------RGELQCIGATTLDEYRKYIEKDAALER--RFQ 318 (468)
T ss_dssp EC------C-------------------CCCTT---------------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE
T ss_pred Ee------Cc-----h------hHHHHHHHhhc---------------CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc
Confidence 99 11 1 11123333221 45788999999887 69999999 998
Q ss_pred EEEe-cCCHHHHHHHHHhhcCC----C--CCChH---HHHHHHhcCCCC
Q 011914 303 KFYW-APTREDRIGVCSGIFRT----D--NVPKE---DIVKLVDTFPGQ 341 (475)
Q Consensus 303 ~~i~-~P~~eeR~~Il~~~l~~----~--~v~~~---~l~~l~~~~~g~ 341 (475)
.+.. .|+.+++.+|++.++.. . .++.+ .+..++.+|...
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Confidence 6444 69999999999977754 2 34444 444555665544
No 48
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.51 E-value=7.3e-14 Score=142.96 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=65.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~-s~~~Ge~-e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
..+..+||+||||||||++|+++|+.++.+|+.+++..+. .++.|+. +..+...+..+...+....++||||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 3457899999999999999999999999999999998775 4566654 4455556554322222456899999999999
Q ss_pred ccCCCCCc-ccchhhHHHHHHHHhhhc
Q 011914 235 AGRMGGTT-QYTVNNQMVNATLMNIAD 260 (475)
Q Consensus 235 ~~~r~~~~-~~~~~~~~v~~~Ll~l~d 260 (475)
...+.+.. ..+.....+...|+.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp --------------CHHHHHHHHHHHH
T ss_pred hhhcCCCceecccchHHHHHHHHHHhh
Confidence 77643211 112222346677777776
No 49
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.49 E-value=4.5e-13 Score=149.57 Aligned_cols=155 Identities=12% Similarity=0.148 Sum_probs=106.5
Q ss_pred CCCe-EEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 157 KVPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 157 ~~p~-glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..|. .+||+||||||||++|+++|+.+ +.+|+.++++++...+... ... ++...+ ...++||||||||
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~-~~~---l~~~~~----~~~~~vl~lDEi~ 589 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS-GGQ---LTEKVR----RKPYSVVLLDAIE 589 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHH----HCSSSEEEEECGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc-cch---hhHHHH----hCCCeEEEEeCcc
Confidence 3454 69999999999999999999997 6799999999988776655 111 222222 5668899999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCC------------CccccccCCC
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST------------LYAPLIRDGR 300 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~------------Ld~aLlR~GR 300 (475)
.+.. .+...|++++++.......|. .....++.||+|||.+.. +.|+|++ |
T Consensus 590 ~~~~-------------~~~~~Ll~~le~g~~~~~~g~--~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--R 652 (758)
T 3pxi_A 590 KAHP-------------DVFNILLQVLEDGRLTDSKGR--TVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--R 652 (758)
T ss_dssp GSCH-------------HHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--T
T ss_pred ccCH-------------HHHHHHHHHhccCeEEcCCCC--EeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--h
Confidence 7632 345667776663222222221 233467899999997654 7888888 9
Q ss_pred ceEEEe--cCCHHHHHHHHHhhcCC-----------CCCChHHHHHHHh
Q 011914 301 MEKFYW--APTREDRIGVCSGIFRT-----------DNVPKEDIVKLVD 336 (475)
Q Consensus 301 fd~~i~--~P~~eeR~~Il~~~l~~-----------~~v~~~~l~~l~~ 336 (475)
|+..+. .|+.+++.+|++.++.. ..++.+.+..++.
T Consensus 653 l~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 653 IDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAE 701 (758)
T ss_dssp SSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHG
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHH
Confidence 988777 47999999998866542 1355566666654
No 50
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.49 E-value=1.4e-13 Score=136.79 Aligned_cols=158 Identities=17% Similarity=0.148 Sum_probs=106.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
..+..+||+||||||||++|++++++++.+++.++++.+.. ...+...|..+ ...+++|||||+|.+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~ 104 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-----LEEGDILFIDEIHRLSR 104 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-----CCTTCEEEETTTTSCCH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-----ccCCCEEEEECCccccc
Confidence 34578999999999999999999999999999998876532 23333333321 25688999999997743
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCCcccCCCc-cc----cCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-YN----QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~-~~----~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
. ....|+.++++.....+.+. .. .....++.+|+|||++..++++|++ ||+..+. .|+
T Consensus 105 ~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~ 169 (324)
T 1hqc_A 105 Q-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYT 169 (324)
T ss_dssp H-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCC
T ss_pred c-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCC
Confidence 2 12333333331110011110 00 0012467899999999999999998 9976655 589
Q ss_pred HHHHHHHHHhhcCCC--CCChHHHHHHHhcCCC
Q 011914 310 REDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 340 (475)
Q Consensus 310 ~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~~g 340 (475)
.+++.++++.++... .++.+.+..++....|
T Consensus 170 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 202 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRITEEAALEIGRRSRG 202 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Confidence 999999999887643 4666677777766533
No 51
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.48 E-value=1.9e-13 Score=152.41 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=105.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccC-----CCCChHHHH-----HHHHHHHHHHHHhCCceeEEec
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-----NAGEPAKLI-----RQRYREAADIIKKGKMCCLFIN 229 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~-----~~Ge~e~~I-----r~~f~~A~~~~~~~~p~ILfID 229 (475)
..+||+||||||||++|+++|+.++.+++.++++++... ..|.+...+ ..+.... +...++|||||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~----~~~~~~vl~lD 564 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV----IKHPHAVLLLD 564 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHH----HHCSSEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHH----HhCCCcEEEEe
Confidence 469999999999999999999999999999999876432 233211111 1122222 25668999999
Q ss_pred cccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC--------------------
Q 011914 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------------- 289 (475)
Q Consensus 230 EiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-------------------- 289 (475)
|||++.+ .+...|++++++.....-.|. .....++.||+|||...
T Consensus 565 Ei~~~~~-------------~~~~~Ll~~le~~~~~~~~g~--~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~ 629 (758)
T 1r6b_X 565 EIEKAHP-------------DVFNILLQVMDNGTLTDNNGR--KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 629 (758)
T ss_dssp TGGGSCH-------------HHHHHHHHHHHHSEEEETTTE--EEECTTEEEEEEECSSCC-----------------CH
T ss_pred CccccCH-------------HHHHHHHHHhcCcEEEcCCCC--EEecCCeEEEEecCcchhhhhhcccCccccchHHHHH
Confidence 9997632 355667776663221111111 11236788999999854
Q ss_pred -----CCccccccCCCceEEEe--cCCHHHHHHHHHhhcCC-----------CCCChHHHHHHHh
Q 011914 290 -----TLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT-----------DNVPKEDIVKLVD 336 (475)
Q Consensus 290 -----~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~-----------~~v~~~~l~~l~~ 336 (475)
.++|+|++ ||+..+. .|+.+++..|++.++.. ..++.+.+..++.
T Consensus 630 ~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 692 (758)
T 1r6b_X 630 EEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAE 692 (758)
T ss_dssp HHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHH
T ss_pred HHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHH
Confidence 67888998 9988877 47999999999977752 1355566666654
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.48 E-value=2.1e-13 Score=152.01 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=104.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc--cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 225 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~--s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~I 225 (475)
.+..+||+||||||||++|+++|+.+ +..++.++.+.+. .++.|+.+..++.+|..+. ...++|
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~----~~~~~i 281 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE----QDTNSI 281 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS----SSSCEE
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHH----hcCCeE
Confidence 56789999999999999999999986 6677888877766 4688999999999998775 667899
Q ss_pred EEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-----CCCccccccCCC
Q 011914 226 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGR 300 (475)
Q Consensus 226 LfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-----~~Ld~aLlR~GR 300 (475)
|||||+|.+.+..... . ....+...|..++. ..++.+|++||.+ ..+|++|.| |
T Consensus 282 L~IDEi~~l~~~~~~~-~---~~~~~~~~L~~~l~---------------~~~~~~I~at~~~~~~~~~~~d~aL~~--R 340 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAAS-G---GQVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_dssp EEETTTTTTTTSCCSS-S---CHHHHHHHHSSCSS---------------SCCCEEEEEECHHHHHCCCCCTTSSGG--G
T ss_pred EEEechHHHhhcCCCC-c---chHHHHHHHHHHHh---------------CCCeEEEEEeCchHHhhhhhcCHHHHh--C
Confidence 9999999998764321 1 11223333433222 3567889988864 357899999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhcC
Q 011914 301 MEKFYW-APTREDRIGVCSGIFR 322 (475)
Q Consensus 301 fd~~i~-~P~~eeR~~Il~~~l~ 322 (475)
|+.+.. .|+.++|.+||+.+..
T Consensus 341 f~~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 341 FQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCHHHHHHHHHHHHH
Confidence 985443 6999999999987654
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.48 E-value=7.9e-14 Score=157.74 Aligned_cols=157 Identities=18% Similarity=0.188 Sum_probs=100.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccc--cCCCCChHHHHHHHHHHHHHHHHh-CCce
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKMC 224 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~--s~~~Ge~e~~Ir~~f~~A~~~~~~-~~p~ 224 (475)
.+.+++|+||||||||++|+++|+.+ +.+++.++++.+. .++.|+.+..++.+|..+. . ..|+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~~ 265 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVV----QSQGEV 265 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHH----TTCSSE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHH----hcCCCe
Confidence 34568999999999999999999997 8899999998886 5688899999999998775 4 3789
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC----CCccccccCCC
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS----TLYAPLIRDGR 300 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~----~Ld~aLlR~GR 300 (475)
||||||+|.+.+.... .. ...+...|..++. ..++.+|++||.+. .++++|+| |
T Consensus 266 iL~IDEi~~l~~~~~~--~g---~~~~~~~L~~~l~---------------~~~i~~I~at~~~~~~~~~~d~aL~r--R 323 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKA--EG---AVDAGNMLKPALA---------------RGELRLIGATTLDEYREIEKDPALER--R 323 (854)
T ss_dssp EEEECCC------------------------HHHHH---------------TTCCCEEEEECHHHHHHHTTCTTTCS--C
T ss_pred EEEEecHHHHhccCCc--cc---hHHHHHHHHHHHh---------------CCCeEEEEecCchHHhhhccCHHHHh--C
Confidence 9999999999865331 11 1122233444333 35677999998764 58999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhcC------CCCCChH---HHHHHHhcCCC
Q 011914 301 MEKFYW-APTREDRIGVCSGIFR------TDNVPKE---DIVKLVDTFPG 340 (475)
Q Consensus 301 fd~~i~-~P~~eeR~~Il~~~l~------~~~v~~~---~l~~l~~~~~g 340 (475)
|+.+.. .|+.+++.+||+.++. ...++.+ .+..++.+|..
T Consensus 324 f~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 324 FQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYIT 373 (854)
T ss_dssp CCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCC
T ss_pred CceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcc
Confidence 997444 6999999999986654 2234444 44455655543
No 54
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.46 E-value=3.1e-12 Score=118.04 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=97.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCChHHHHHHHHHHHHHH--HHhCCceeEEeccccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLFINDLDA 233 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~--~~~~~p~ILfIDEiDa 233 (475)
.++|+||||||||++++++++++ ...++.++++.... ...++..+...... .....+.||+|||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 49999999999999999999985 45677777654321 22233333222100 0025789999999998
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 312 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~ee 312 (475)
+... ....|..+++ ....++.+|+|||.+..+++++.+ ||..+.. .|+.++
T Consensus 114 l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~~~~~~~~~~~l~~--r~~~i~~~~~~~~~ 165 (226)
T 2chg_A 114 LTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEA 165 (226)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHH
T ss_pred cCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcCHHHHH--hCceeecCCCCHHH
Confidence 7432 1234444444 224567899999999999999999 8873333 479999
Q ss_pred HHHHHHhhcCC--CCCChHHHHHHHhcC
Q 011914 313 RIGVCSGIFRT--DNVPKEDIVKLVDTF 338 (475)
Q Consensus 313 R~~Il~~~l~~--~~v~~~~l~~l~~~~ 338 (475)
+.+++..++.. ..++.+.+..++...
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 193 (226)
T 2chg_A 166 MKKRLLEICEKEGVKITEDGLEALIYIS 193 (226)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 99999987753 345666666666543
No 55
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.45 E-value=2.1e-13 Score=143.37 Aligned_cols=165 Identities=16% Similarity=0.235 Sum_probs=102.1
Q ss_pred HHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhC
Q 011914 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221 (475)
Q Consensus 147 ~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~ 221 (475)
++.+...++. +..++||||||||||+||++|++++ +.+++++++..+...+.+.........|.... ..
T Consensus 120 ~~~~a~~~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 193 (440)
T 2z4s_A 120 ALEVAKHPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY----RK 193 (440)
T ss_dssp HHHHHHSTTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHH----TT
T ss_pred HHHHHhCCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHh----cC
Confidence 3444444442 6789999999999999999999998 88899998876542111000000001122111 23
Q ss_pred CceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC-CCC---Ccccccc
Q 011914 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FST---LYAPLIR 297 (475)
Q Consensus 222 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~-~~~---Ld~aLlR 297 (475)
.+.||||||++.+.++.. .+ ..+..++..+.+ .+..||+||++ +.. ++++|++
T Consensus 194 ~~~vL~IDEi~~l~~~~~--~q-----~~l~~~l~~l~~----------------~~~~iIitt~~~~~~l~~l~~~L~s 250 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTG--VQ-----TELFHTFNELHD----------------SGKQIVICSDREPQKLSEFQDRLVS 250 (440)
T ss_dssp TCSEEEEECGGGGSSCHH--HH-----HHHHHHHHHHHT----------------TTCEEEEEESSCGGGCSSCCHHHHH
T ss_pred CCCEEEEeCcccccCChH--HH-----HHHHHHHHHHHH----------------CCCeEEEEECCCHHHHHHHHHHHHh
Confidence 799999999998865311 11 122233322221 23345556654 444 7889999
Q ss_pred CCCce--EEEe--cCCHHHHHHHHHhhcCC--CCCChHHHHHHHhcCCCCc
Q 011914 298 DGRME--KFYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQS 342 (475)
Q Consensus 298 ~GRfd--~~i~--~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g~~ 342 (475)
||. ..+. .|+.++|.+|++..+.. ..++.+.+..++....|..
T Consensus 251 --R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~ 299 (440)
T 2z4s_A 251 --RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNL 299 (440)
T ss_dssp --HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCH
T ss_pred --hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCH
Confidence 885 4444 69999999999987763 3466667777776665543
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.44 E-value=2e-13 Score=152.46 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=96.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh----------CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el----------g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~IL 226 (475)
+.+..+||+||||||||++|+++|+.+ +..++.+++ ..+|.|+.+..++.+|..+. ...|+||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~----~~~~~iL 271 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIR----QAGNIIL 271 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHH----TCCCCEE
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHH----hcCCEEE
Confidence 345679999999999999999999997 788888777 46678888899999999887 7889999
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccCCCc
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 301 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~GRf 301 (475)
||| +. . .....|+..+. ...+.+|+|||... .+|++|+| ||
T Consensus 272 fiD------~~-----~------~~~~~L~~~l~---------------~~~v~~I~at~~~~~~~~~~~d~al~r--Rf 317 (758)
T 3pxi_A 272 FID------AA-----I------DASNILKPSLA---------------RGELQCIGATTLDEYRKYIEKDAALER--RF 317 (758)
T ss_dssp EEC------C-------------------CCCTT---------------SSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred EEc------Cc-----h------hHHHHHHHHHh---------------cCCEEEEeCCChHHHHHHhhccHHHHh--hC
Confidence 999 11 0 11123333221 45788999999988 79999999 99
Q ss_pred eEEEe-cCCHHHHHHHHHhhcCC----C--CCChH---HHHHHHhcCC
Q 011914 302 EKFYW-APTREDRIGVCSGIFRT----D--NVPKE---DIVKLVDTFP 339 (475)
Q Consensus 302 d~~i~-~P~~eeR~~Il~~~l~~----~--~v~~~---~l~~l~~~~~ 339 (475)
..+.. .|+.+++.+||+.+... . .++.+ .+..++.+|-
T Consensus 318 ~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i 365 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence 65333 69999999999977654 2 34444 3444555553
No 57
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=8.7e-13 Score=133.74 Aligned_cols=147 Identities=14% Similarity=0.210 Sum_probs=97.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh-----------CCceEEEecCccc-c-----------------CCCCCh-HHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM-----------GINPIMMSAGELE-S-----------------GNAGEP-AKL 206 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el-----------g~~~i~vs~s~l~-s-----------------~~~Ge~-e~~ 206 (475)
..|..++|+||||||||++|+++++++ +..++.+++.... + ...|.. ...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 456799999999999999999999997 8999999876432 1 011111 122
Q ss_pred HHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHH-HHhhhcCCCcccCCCccccCCCCCceEEEec
Q 011914 207 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT-LMNIADNPTNVQLPGMYNQEENPRVPIIVTG 285 (475)
Q Consensus 207 Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~-Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT 285 (475)
+..++. .++...+ ||||||+|.+..... + .. +..+.+ +. .++.||+||
T Consensus 123 ~~~l~~----~l~~~~~-vlilDEi~~l~~~~~---~---------~~~l~~l~~----------~~----~~~~iI~~t 171 (384)
T 2qby_B 123 IDKIKN----GTRNIRA-IIYLDEVDTLVKRRG---G---------DIVLYQLLR----------SD----ANISVIMIS 171 (384)
T ss_dssp HHHHHH----HHSSSCE-EEEEETTHHHHHSTT---S---------HHHHHHHHT----------SS----SCEEEEEEC
T ss_pred HHHHHH----HhccCCC-EEEEECHHHhccCCC---C---------ceeHHHHhc----------CC----cceEEEEEE
Confidence 222222 2223334 999999998865421 1 12 333333 11 678999999
Q ss_pred CCC---CCCccccccCCCceEEEe--cCCHHHHHHHHHhhcC----CCCCChHHHHHHHh
Q 011914 286 NDF---STLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR----TDNVPKEDIVKLVD 336 (475)
Q Consensus 286 N~~---~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~----~~~v~~~~l~~l~~ 336 (475)
|.. ..+++++++ ||...+. .|+.+++.+|++.++. ...++.+.+..+++
T Consensus 172 ~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~ 229 (384)
T 2qby_B 172 NDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAA 229 (384)
T ss_dssp SSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHH
T ss_pred CCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHH
Confidence 987 678999988 7765555 4799999999998664 24456554444433
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=1.2e-12 Score=132.06 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCccccC----------------CCCChH-HHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPA-KLIRQR 210 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s~----------------~~Ge~e-~~Ir~~ 210 (475)
..+..++|+||||||||++++++++++ +..++.+++....+. ..|.+. ..+..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 456789999999999999999999998 888999987653311 112212 222223
Q ss_pred HHHHHHHHH-hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCC-CCCceEEEecCCC
Q 011914 211 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDF 288 (475)
Q Consensus 211 f~~A~~~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~-~~~V~VI~TTN~~ 288 (475)
+. .++ ...|+||||||+|.+...+. .+.+...+++... ... ..++.+|+|||.+
T Consensus 122 ~~----~l~~~~~~~vlilDEi~~l~~~~~--------~~~~l~~l~~~~~------------~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 122 VK----RLSRLRGIYIIVLDEIDFLPKRPG--------GQDLLYRITRINQ------------ELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HH----HHTTSCSEEEEEEETTTHHHHSTT--------HHHHHHHHHHGGG------------CC-----CEEEEECSCS
T ss_pred HH----HHhccCCeEEEEEccHhhhcccCC--------CChHHHhHhhchh------------hcCCCceEEEEEEECCC
Confidence 32 222 45589999999998864420 1122222333221 011 4678899999988
Q ss_pred ---CCCccccccCCCceE-EEe--cCCHHHHHHHHHhhcCC----CCCChHHHHHHH
Q 011914 289 ---STLYAPLIRDGRMEK-FYW--APTREDRIGVCSGIFRT----DNVPKEDIVKLV 335 (475)
Q Consensus 289 ---~~Ld~aLlR~GRfd~-~i~--~P~~eeR~~Il~~~l~~----~~v~~~~l~~l~ 335 (475)
..+++.+.+ ||.. .+. .|+.+++.+|++..+.. ..++.+.+..++
T Consensus 178 ~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~ 232 (387)
T 2v1u_A 178 GFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCA 232 (387)
T ss_dssp TTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHH
T ss_pred chHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 788999998 8864 344 47999999999977642 345554444433
No 59
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=2e-13 Score=146.12 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChH-------HHHHHHHHHHHHHH-HhCCceeEEec
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA-------KLIRQRYREAADII-KKGKMCCLFIN 229 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e-------~~Ir~~f~~A~~~~-~~~~p~ILfID 229 (475)
.++++||+||||||||++|+++|++++.+++.++++.+.+....+.. ..++..|..+.+.. ....++|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 56899999999999999999999999999999999876532110000 00111222221000 13678999999
Q ss_pred cccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC--CCccccccCCCceEEEe-
Q 011914 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYW- 306 (475)
Q Consensus 230 EiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~--~Ld~aLlR~GRfd~~i~- 306 (475)
|+|.+..... .....|.++++ ..+++||+++|... .++ ++.| |+..+.+
T Consensus 156 Eid~l~~~~~----------~~l~~L~~~l~---------------~~~~~iIli~~~~~~~~l~-~l~~--r~~~i~f~ 207 (516)
T 1sxj_A 156 EVDGMSGGDR----------GGVGQLAQFCR---------------KTSTPLILICNERNLPKMR-PFDR--VCLDIQFR 207 (516)
T ss_dssp SGGGCCTTST----------THHHHHHHHHH---------------HCSSCEEEEESCTTSSTTG-GGTT--TSEEEECC
T ss_pred CCCccchhhH----------HHHHHHHHHHH---------------hcCCCEEEEEcCCCCccch-hhHh--ceEEEEeC
Confidence 9999875421 11234555444 23456777666543 343 4555 4443322
Q ss_pred cCCHHHHHHHHHhhcCC--CCCChHHHHHHHhcCCC
Q 011914 307 APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPG 340 (475)
Q Consensus 307 ~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g 340 (475)
.|+.+++.+++..++.. ..++.+.+..++....|
T Consensus 208 ~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 208 RPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 69999999999877654 34666777777766433
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.40 E-value=2.6e-12 Score=119.59 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=95.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCce------------------------EEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINP------------------------IMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~------------------------i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..++|+||||+|||+++++++++++... +.+.... ......++.+++
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 116 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLD 116 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHH
Confidence 3456899999999999999999999875421 2222111 112334444444
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
..........+.+|+|||+|.+.. .....|+.+++ ....++.+|++||++..++
T Consensus 117 ~~~~~~~~~~~~vlviDe~~~l~~-------------~~~~~l~~~l~-------------~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 117 NVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp SCCCSCSSSSSEEEEEETGGGSCH-------------HHHHHHHHHHH-------------SCCTTEEEEEEESCGGGSC
T ss_pred HhhhchhcCCceEEEEECcccccH-------------HHHHHHHHHHh-------------cCCCceEEEEEeCChHhCC
Confidence 321000134689999999997632 12234455444 2346788999999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCC--CCChHHHHHHHhcC
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF 338 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~ 338 (475)
+++++ |+..+.. .|+.++..++++.++... .++.+.+..++...
T Consensus 171 ~~l~~--r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 217 (250)
T 1njg_A 171 VTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 217 (250)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHH--HhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence 99988 7643333 479999999999887643 45555666665554
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.36 E-value=5.2e-12 Score=142.89 Aligned_cols=183 Identities=14% Similarity=0.122 Sum_probs=113.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccC-----CCCChHHHH-----HHHHHHHHHHHHhCCceeE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI-----RQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~-----~~Ge~e~~I-----r~~f~~A~~~~~~~~p~IL 226 (475)
..+||+||||||||++|+++++.+ +.+|+.++++++... ..|.+...+ ..+.... +...++||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~----~~~~~~vl 664 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV----RRRPYSVI 664 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHH----HHCSSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHH----HhCCCeEE
Confidence 589999999999999999999998 789999999876532 222111111 1122222 25567899
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC-------------------
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND------------------- 287 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~------------------- 287 (475)
||||+|.+.. .+...|+.++++.....-.| ......+++||+|||.
T Consensus 665 ~lDEi~~l~~-------------~~~~~Ll~~l~~~~~~~~~g--~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~ 729 (854)
T 1qvr_A 665 LFDEIEKAHP-------------DVFNILLQILDDGRLTDSHG--RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIR 729 (854)
T ss_dssp EESSGGGSCH-------------HHHHHHHHHHTTTEECCSSS--CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHH
T ss_pred EEecccccCH-------------HHHHHHHHHhccCceECCCC--CEeccCCeEEEEecCcChHHHhhhcccccchHHHH
Confidence 9999997522 45567777777433221111 1122357889999997
Q ss_pred -------CCCCccccccCCCceEEEe--cCCHHHHHHHHHhhcCC-----------CCCChHHHHHHHh-cC--CCCchh
Q 011914 288 -------FSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT-----------DNVPKEDIVKLVD-TF--PGQSID 344 (475)
Q Consensus 288 -------~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~-----------~~v~~~~l~~l~~-~~--~g~~i~ 344 (475)
...+.|+|+. ||+..+. .|+.+++..|++.++.. ..++.+.+..++. .| +|..-.
T Consensus 730 ~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~ 807 (854)
T 1qvr_A 730 DEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARP 807 (854)
T ss_dssp HHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTST
T ss_pred HHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHH
Confidence 2346777887 9987766 47999999998877651 2356666766665 34 233222
Q ss_pred hHHHHHHHhhHHHHHHHHHH
Q 011914 345 FFGALRARVYDDEVRKWISE 364 (475)
Q Consensus 345 f~gal~~~~~~~av~~~i~~ 364 (475)
.- .++.+.+...+.+.+..
T Consensus 808 L~-~~i~~~~~~~~~~~i~~ 826 (854)
T 1qvr_A 808 LR-RVIQRELETPLAQKILA 826 (854)
T ss_dssp HH-HHHHHHTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHh
Confidence 21 44455555544444433
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.35 E-value=4.3e-12 Score=125.01 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=100.2
Q ss_pred EEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCChHHHHHHHHHHHHHHH--HhCCceeEEecccccc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADII--KKGKMCCLFINDLDAG 234 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~--~~~~p~ILfIDEiDal 234 (475)
+|||||||||||++|+++++++ +.+++.++++.... ... ++..+....... ....+.||+|||+|.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--IDV----VRHKIKEFARTAPIGGAPFKIIFLDEADAL 114 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TTT----SSHHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--hHH----HHHHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence 9999999999999999999996 34678888775432 111 122222111000 0255899999999987
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHH
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDR 313 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR 313 (475)
... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.. .|+.+++
T Consensus 115 ~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~i~~~~~~~~~~ 166 (319)
T 2chq_A 115 TAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEAM 166 (319)
T ss_dssp CHH-------------HHHTTGGGTS-------------SSSSSEEEEEEESCGGGSCHHHHT--TCEEEECCCCCHHHH
T ss_pred CHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcchHHHh--hCeEEEecCCCHHHH
Confidence 431 1233444333 345678899999999999999999 8874444 5899999
Q ss_pred HHHHHhhcCCCC--CChHHHHHHHhcCCCCch
Q 011914 314 IGVCSGIFRTDN--VPKEDIVKLVDTFPGQSI 343 (475)
Q Consensus 314 ~~Il~~~l~~~~--v~~~~l~~l~~~~~g~~i 343 (475)
.+++..++...+ ++.+.+..++... +.++
T Consensus 167 ~~~l~~~~~~~~~~i~~~~l~~l~~~~-~G~~ 197 (319)
T 2chq_A 167 KKRLLEICEKEGVKITEDGLEALIYIS-GGDF 197 (319)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHTT-TTCH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCH
Confidence 999998887654 4666777777554 3344
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=2.5e-11 Score=121.56 Aligned_cols=145 Identities=14% Similarity=0.197 Sum_probs=97.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC------CceEEEecCccccCCCCChHHHHHHHHHHHHHH------------HHhCC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAADI------------IKKGK 222 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg------~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~------------~~~~~ 222 (475)
.+||+||||||||++|+++++.++ ..++.++++... + ...+++.+...... .....
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER----G--ISIVREKVKNFARLTVSKPSKHDLENYPCPP 133 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC----C--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc----c--hHHHHHHHHHHhhhcccccchhhcccCCCCC
Confidence 399999999999999999999854 457777776532 1 23333333222110 00234
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCce
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd 302 (475)
+.||||||+|.+... ....|+.+++ ....++.+|++||.+..+++++++ |+.
T Consensus 134 ~~vliiDE~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--R~~ 185 (353)
T 1sxj_D 134 YKIIILDEADSMTAD-------------AQSALRRTME-------------TYSGVTRFCLICNYVTRIIDPLAS--QCS 185 (353)
T ss_dssp CEEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--HSE
T ss_pred ceEEEEECCCccCHH-------------HHHHHHHHHH-------------hcCCCceEEEEeCchhhCcchhhc--cCc
Confidence 679999999987432 1234555444 223456788899999999999999 887
Q ss_pred EEEe-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhcCC
Q 011914 303 KFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFP 339 (475)
Q Consensus 303 ~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~ 339 (475)
.+.+ .|+.++...+++.++...+ ++.+.+..++....
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISA 225 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTS
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 5444 5899999999998876544 66666666665533
No 64
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.29 E-value=2.8e-11 Score=122.33 Aligned_cols=147 Identities=11% Similarity=0.078 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+|||||||+|||++|+++|+.+... ++.+.+..- + ..-....+|.+.+
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~--~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C--CCCCHHHHHHHHH
Confidence 567899999999999999999999997532 333333200 0 0122455677766
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+...-....+.|++|||+|.+... ....|+..++ ++..++.+|++||+++.+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lE-------------ep~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLE-------------EPPAETWFFLATREPERLL 152 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHT-------------SCCTTEEEEEEESCGGGSC
T ss_pred HHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEeCChHhCc
Confidence 5431111345789999999987321 1234555444 4556788999999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCChHHHHHHHhc
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKEDIVKLVDT 337 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~ 337 (475)
+++++ |+..+.+ .|+.++..++++... .++.+.+..++..
T Consensus 153 ~ti~S--Rc~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~ 193 (334)
T 1a5t_A 153 ATLRS--RCRLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRL 193 (334)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred HHHhh--cceeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 99999 8865444 589999999998776 4566655555443
No 65
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.29 E-value=3.7e-11 Score=113.01 Aligned_cols=145 Identities=15% Similarity=0.205 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhC---CceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
.+..++|+||||||||++|+++++++. ..++.+++.++..... ..+. ....+.+|||||+|.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~------~~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST--------ALLE------GLEQFDLICIDDVDAV 116 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG--------GGGT------TGGGSSEEEEETGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--------HHHH------hccCCCEEEEeccccc
Confidence 467899999999999999999999864 7788888877654321 1111 0245889999999987
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCC-CC---CCccccccCCCce--EEEe--
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FS---TLYAPLIRDGRME--KFYW-- 306 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~-~~---~Ld~aLlR~GRfd--~~i~-- 306 (475)
.... .....|..+++ . . .....+.+|+|||. +. .+++.+.+ ||. ..+.
T Consensus 117 ~~~~-----------~~~~~l~~~l~-----~-----~-~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~ 172 (242)
T 3bos_A 117 AGHP-----------LWEEAIFDLYN-----R-----V-AEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQ 172 (242)
T ss_dssp TTCH-----------HHHHHHHHHHH-----H-----H-HHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECC
T ss_pred cCCH-----------HHHHHHHHHHH-----H-----H-HHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeC
Confidence 5431 01122333222 0 0 00122336666654 33 45678888 774 5555
Q ss_pred cCCHHHHHHHHHhhcCC--CCCChHHHHHHHhcCCC
Q 011914 307 APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPG 340 (475)
Q Consensus 307 ~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g 340 (475)
.|+.+++.++++.++.. ..++.+.+..++..+.|
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 173 PMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp CCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 58999999999988764 34677777777776544
No 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=3.5e-11 Score=121.01 Aligned_cols=152 Identities=15% Similarity=0.241 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh------CCceEEEecCcccc----------------CCCCChH-HHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELES----------------GNAGEPA-KLIRQRYRE 213 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el------g~~~i~vs~s~l~s----------------~~~Ge~e-~~Ir~~f~~ 213 (475)
..+..++|+||||||||++++++++.+ +..++.+++..... ...|.+. ..+..++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~- 121 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVK- 121 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHH-
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH-
Confidence 456789999999999999999999998 88899988643211 0112222 22223332
Q ss_pred HHHHHHh-CCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC---C
Q 011914 214 AADIIKK-GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF---S 289 (475)
Q Consensus 214 A~~~~~~-~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~---~ 289 (475)
.++. ..|+||+|||++.+..... + .+...|+...++ ....++.+|++||++ .
T Consensus 122 ---~l~~~~~~~vlilDE~~~l~~~~~---~------~~l~~l~~~~~~------------~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 122 ---AVRDYGSQVVIVLDEIDAFVKKYN---D------DILYKLSRINSE------------VNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp ---HHHTCCSCEEEEEETHHHHHHSSC---S------THHHHHHHHHHS------------CCC--EEEEEEESCGGGGG
T ss_pred ---HHhccCCeEEEEEcChhhhhccCc---C------HHHHHHhhchhh------------cCCCeEEEEEEECCCChHh
Confidence 2333 4499999999999875421 1 122334443320 134678899999987 4
Q ss_pred CCccccccCCCce-EEEe--cCCHHHHHHHHHhhcC----CCCCChHHHHHHH
Q 011914 290 TLYAPLIRDGRME-KFYW--APTREDRIGVCSGIFR----TDNVPKEDIVKLV 335 (475)
Q Consensus 290 ~Ld~aLlR~GRfd-~~i~--~P~~eeR~~Il~~~l~----~~~v~~~~l~~l~ 335 (475)
.+++.+.+ ||. ..+. .++.+++.+|++..+. ...++.+.+..+.
T Consensus 178 ~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~ 228 (386)
T 2qby_A 178 LLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCA 228 (386)
T ss_dssp GCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHH
T ss_pred hhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 67888888 663 2444 5799999999987654 2345555444433
No 67
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.27 E-value=1.4e-11 Score=123.31 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=88.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHH-HHHHHHHHHH-hCC---ceeEEecccccc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ-RYREAADIIK-KGK---MCCLFINDLDAG 234 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~-~f~~A~~~~~-~~~---p~ILfIDEiDal 234 (475)
.++|||||||||||++|+++|+.++.+++.+++..-. .....+.. .+........ ... .+||||||+|.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~-----~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~ 121 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDL-----LPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRS 121 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-----CHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCC-----ChhhcCCceeecCCCCceEeccCcccccEEEEEccccC
Confidence 4799999999999999999999999999988864111 00110000 0000000000 112 379999999975
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----CCccccccCCCceEEEe--c
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW--A 307 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----~Ld~aLlR~GRfd~~i~--~ 307 (475)
.+ .+...|++.+++ ..+.++|... ....++.||+|+|..+ .++++|++ ||+..+. .
T Consensus 122 ~~-------------~~~~~Ll~~l~~-~~~~~~g~~~-~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~ 184 (331)
T 2r44_A 122 PA-------------KVQSALLECMQE-KQVTIGDTTY-PLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTY 184 (331)
T ss_dssp CH-------------HHHHHHHHHHHH-SEEEETTEEE-ECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCC
T ss_pred CH-------------HHHHHHHHHHhc-CceeeCCEEE-ECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCC
Confidence 32 123444444441 1223333211 2234667778888543 38999999 9987666 6
Q ss_pred CCHHHHHHHHHhhcCC
Q 011914 308 PTREDRIGVCSGIFRT 323 (475)
Q Consensus 308 P~~eeR~~Il~~~l~~ 323 (475)
|+.+++.+|++.....
T Consensus 185 p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 185 LDKESELEVMRRVSNM 200 (331)
T ss_dssp CCHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHhcccc
Confidence 9999999999987754
No 68
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.27 E-value=6.4e-11 Score=119.47 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=98.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc------------------------eEEEecCccccCCCCChHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~------------------------~i~vs~s~l~s~~~Ge~e~~Ir~~f~ 212 (475)
+.|..+||+||||||||++|+++++.++.. ++.++...- . + ...++.++.
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~--~~~~~~l~~ 109 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR--T--K--VEDTRDLLD 109 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS--C--C--SSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccccc--C--C--HHHHHHHHH
Confidence 456789999999999999999999997642 333333210 0 1 123445555
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCc
Q 011914 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (475)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld 292 (475)
.+........+.||+|||+|.+... ....|+.+++ ....++.+|++||++..+.
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCHH-------------HHHHHHHHHH-------------SCCSSEEEEEEESCGGGSC
T ss_pred HHhhccccCCeEEEEEECcchhcHH-------------HHHHHHHHHh-------------cCCCceEEEEEeCChHhCc
Confidence 4321001345789999999976321 2234555444 3456788999999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCC--CCChHHHHHHHhcCCC
Q 011914 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 340 (475)
Q Consensus 293 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~~g 340 (475)
+.+++ |+..+-. .|+.++..++++.++... .++.+.+..++....|
T Consensus 164 ~~l~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 164 VTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 (373)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS
T ss_pred HHHHh--heeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 99988 7744333 589999999999887654 3455556556555433
No 69
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=5.1e-11 Score=117.65 Aligned_cols=144 Identities=19% Similarity=0.206 Sum_probs=96.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC-----CceEEEecCccccCCCCChHHHHHHHHHHHHHH--HHhCCceeEEeccccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLFINDLDA 233 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg-----~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~--~~~~~p~ILfIDEiDa 233 (475)
.+|||||||||||++|+++++.+. ..++.++++.... ...++..+...... .....+.||+|||+|.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 499999999999999999999963 3467777654321 12222222221100 0025688999999997
Q ss_pred cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHH
Q 011914 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 312 (475)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~ee 312 (475)
+... ....|+.+++ ....++.+|+|||.+..+++++.+ |+..+.. .|+.++
T Consensus 122 l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~l~~~~ 173 (327)
T 1iqp_A 122 LTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED 173 (327)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--TEEEEECCCCCHHH
T ss_pred CCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCCccccCHHHHh--hCcEEEecCCCHHH
Confidence 7431 1234555444 234567899999999999999998 8874433 578999
Q ss_pred HHHHHHhhcCCCC--CChHHHHHHHhcC
Q 011914 313 RIGVCSGIFRTDN--VPKEDIVKLVDTF 338 (475)
Q Consensus 313 R~~Il~~~l~~~~--v~~~~l~~l~~~~ 338 (475)
..++++.++...+ ++.+.+..++...
T Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 201 (327)
T 1iqp_A 174 IAKRLRYIAENEGLELTEEGLQAILYIA 201 (327)
T ss_dssp HHHHHHHHHHTTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHC
Confidence 9999998876554 5666666666544
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.26 E-value=1.1e-11 Score=120.24 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=91.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC---CceEEEecCccccCCCCChHHHH-HHHHH-------HHH----HHHHhCCc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLI-RQRYR-------EAA----DIIKKGKM 223 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~s~l~s~~~Ge~e~~I-r~~f~-------~A~----~~~~~~~p 223 (475)
+..+||+||||||||++|+++++.+. .+|+.++++.+.. ..+ ..+|. .+. ..+....+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-------~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~ 101 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-------NLLDSELFGHEAGAFTGAQKRHPGRFERADG 101 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-------HHHHHHHHCCC---------CCCCHHHHTTT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-------hHHHHHhcCCcccccccccccccchhhhcCC
Confidence 46799999999999999999999875 6899999887631 111 11221 110 01113346
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-------CCCccccc
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLI 296 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-------~~Ld~aLl 296 (475)
.+|||||+|.+... +...|+.++++.....+++. .....++.||+|||.. ..+.++|.
T Consensus 102 ~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~ 166 (265)
T 2bjv_A 102 GTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVNEGTFRADLL 166 (265)
T ss_dssp SEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC----CEECCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred cEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCc--ccccCCeEEEEecCcCHHHHHHcCCccHHHH
Confidence 89999999987432 22344454442111111111 1123567899999984 24678888
Q ss_pred cCCCceE-EEecCCHHHHH----HHHHhhcCC----------CCCChHHHHHHHh
Q 011914 297 RDGRMEK-FYWAPTREDRI----GVCSGIFRT----------DNVPKEDIVKLVD 336 (475)
Q Consensus 297 R~GRfd~-~i~~P~~eeR~----~Il~~~l~~----------~~v~~~~l~~l~~ 336 (475)
+ ||.. .+.+|...+|. .++++++.. ..++.+.+..+..
T Consensus 167 ~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~ 219 (265)
T 2bjv_A 167 D--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLN 219 (265)
T ss_dssp H--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHH
T ss_pred H--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHh
Confidence 8 8864 45577765553 344433321 1456666666654
No 71
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.25 E-value=1.3e-10 Score=117.41 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=101.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 236 (475)
.++..++|+||||+|||+|++++|++++.++...++..+.. ...+..++.. ...+.|+||||++.+.+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~------~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS------LERGDVLFIDEIHRLNK 116 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH------CCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH------ccCCCEEEEcchhhcCH
Confidence 35577999999999999999999999999887777654431 2333333321 24578999999997753
Q ss_pred CCCCCcccchhhHHHHHHHHhhhcCCC-cccC-CCc---cccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011914 237 RMGGTTQYTVNNQMVNATLMNIADNPT-NVQL-PGM---YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (475)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~l~d~~~-~v~l-dg~---~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~--~P~ 309 (475)
. +...|+..+.+.. .+-+ .+. ........+.+|.+||++..|++++++ ||...+. .|+
T Consensus 117 ~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~ 181 (334)
T 1in4_A 117 A-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT 181 (334)
T ss_dssp H-------------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred H-------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCC
Confidence 1 1122222222110 0000 000 000122456788899999999999999 9976555 689
Q ss_pred HHHHHHHHHhhcCC--CCCChHHHHHHHhcCCCC
Q 011914 310 REDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQ 341 (475)
Q Consensus 310 ~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~~g~ 341 (475)
.+++.+|++..... ..++.+.+..+++...|.
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~ 215 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT 215 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC
Confidence 99999999977643 345666777777765443
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=7e-11 Score=119.50 Aligned_cols=152 Identities=11% Similarity=0.103 Sum_probs=98.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh----CCceEEEecCccccC----------------CCCChHHHHHHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG----------------NAGEPAKLIRQRYREAADIIK 219 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~s~l~s~----------------~~Ge~e~~Ir~~f~~A~~~~~ 219 (475)
..++|+||||||||++++++++.+ +..++.+++....+. ..+..... +++.....+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~l~~~l~ 121 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDE---FLALLVEHLR 121 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHH---HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHH---HHHHHHHHHh
Confidence 389999999999999999999998 678888887543310 01111111 2222222222
Q ss_pred -hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC---CCCcccc
Q 011914 220 -KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF---STLYAPL 295 (475)
Q Consensus 220 -~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~---~~Ld~aL 295 (475)
...|.||||||+|.+- ......|..++. .+. .....++.||++||.+ ..+++.+
T Consensus 122 ~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~-----~~~----~~~~~~~~iI~~~~~~~~~~~l~~~~ 179 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQ-----EAD----KLGAFRIALVIVGHNDAVLNNLDPST 179 (389)
T ss_dssp HTTCCEEEEEETGGGSC-------------HHHHHHHHHHTT-----CHH----HHSSCCEEEEEEESSTHHHHTSCHHH
T ss_pred hcCCeEEEEEECccccc-------------hHHHHHHHHHHH-----hCC----CCCcCCEEEEEEECCchHHHHhCHHh
Confidence 4669999999999871 123344544443 000 0011578899999988 6788888
Q ss_pred ccCCCceE-EEe--cCCHHHHHHHHHhhcCC----CCCChHHHHHHHhcC
Q 011914 296 IRDGRMEK-FYW--APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTF 338 (475)
Q Consensus 296 lR~GRfd~-~i~--~P~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~ 338 (475)
.+ ||.. .+. .++.++..++++..+.. ..++.+.+..++...
T Consensus 180 ~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 180 RG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp HH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred hh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 88 7764 444 46889999999876643 457777666665554
No 73
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=4.6e-11 Score=117.81 Aligned_cols=149 Identities=15% Similarity=0.210 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH---hCCceeEEe
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK---KGKMCCLFI 228 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~---~~~p~ILfI 228 (475)
+.|. ++||||||+|||++|+++++++ +..++.++++... + ...++.++........ ...+.||+|
T Consensus 41 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~----~--~~~i~~~~~~~~~~~~~~~~~~~~viii 113 (323)
T 1sxj_B 41 NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR----G--IDVVRNQIKHFAQKKLHLPPGKHKIVIL 113 (323)
T ss_dssp CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCCCCCTTCCEEEEE
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc----C--hHHHHHHHHHHHhccccCCCCCceEEEE
Confidence 3445 9999999999999999999996 3457777765432 1 3445555543320000 234889999
Q ss_pred ccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-c
Q 011914 229 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 307 (475)
Q Consensus 229 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~ 307 (475)
||+|.+... ....|+.+++ ....++.+|++||.+..+++++++ |+..+.. .
T Consensus 114 De~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~ 165 (323)
T 1sxj_B 114 DEADSMTAG-------------AQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQS--QCAILRYSK 165 (323)
T ss_dssp ESGGGSCHH-------------HHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCC
T ss_pred ECcccCCHH-------------HHHHHHHHHh-------------ccCCCceEEEEeCChhhchhHHHh--hceEEeecC
Confidence 999987431 1223444333 334667889999999999999998 7764333 5
Q ss_pred CCHHHHHHHHHhhcCCC--CCChHHHHHHHhcCCC
Q 011914 308 PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 340 (475)
Q Consensus 308 P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~~g 340 (475)
|+.+++.++++.++... .++.+.+..++....|
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 200 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 200 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89999999999877543 4556666666555433
No 74
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=1.5e-10 Score=116.49 Aligned_cols=148 Identities=16% Similarity=0.319 Sum_probs=90.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC-----------------------------ceEEEecCccccCCCCChHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------------NPIMMSAGELESGNAGEPAKLI 207 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~-----------------------------~~i~vs~s~l~s~~~Ge~e~~I 207 (475)
+.|. ++|+||+|+|||++++++++++.. .++.++..... ......+
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 109 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVI 109 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CCHHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC----CcchHHH
Confidence 4455 999999999999999999997411 12222221110 0111134
Q ss_pred HHHHHHHHHHHH----------hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCC
Q 011914 208 RQRYREAADIIK----------KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277 (475)
Q Consensus 208 r~~f~~A~~~~~----------~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~ 277 (475)
++....+..... ...|.||+|||++.+.. .....|+.+++ +...
T Consensus 110 ~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-------------~~~~~L~~~le-------------~~~~ 163 (354)
T 1sxj_E 110 QELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-------------DAQAALRRTME-------------KYSK 163 (354)
T ss_dssp HHHHHHHTTTTC------------CCEEEEEECTTSSCH-------------HHHHHHHHHHH-------------HSTT
T ss_pred HHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-------------HHHHHHHHHHH-------------hhcC
Confidence 444443321000 23678999999997421 11233444443 2234
Q ss_pred CceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CC-hHHHHHHHhc
Q 011914 278 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VP-KEDIVKLVDT 337 (475)
Q Consensus 278 ~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~-~~~l~~l~~~ 337 (475)
++.+|++||++..+.+++++ |+..+-+ .|+.+++.++++.++...+ ++ .+.+..++..
T Consensus 164 ~~~~Il~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~ 225 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA 225 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 67899999999999999998 8844433 5899999999998876544 44 5555555544
No 75
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.20 E-value=4e-12 Score=127.38 Aligned_cols=146 Identities=17% Similarity=0.221 Sum_probs=82.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEE----EecCccc---------------------cCCCCChHHHH------H
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAGELE---------------------SGNAGEPAKLI------R 208 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~----vs~s~l~---------------------s~~~Ge~e~~I------r 208 (475)
.++|||||||||||++|+++++.++..... +++.... ....+.++..+ +
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 359999999999999999999998631000 0111000 00112222211 1
Q ss_pred HHHHHHH-----HHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCC-CcccCCCccccCCCCCceEE
Q 011914 209 QRYREAA-----DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP-TNVQLPGMYNQEENPRVPII 282 (475)
Q Consensus 209 ~~f~~A~-----~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~-~~v~ldg~~~~~~~~~V~VI 282 (475)
..+..+. ..+....++||||||+|.+... +...|+.++++. ..+...|.. .....++.+|
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~~li 191 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLS-IRHPARFVLV 191 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCC-EEEECCEEEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceE-EeeCCceEEE
Confidence 2222210 0001224789999999977432 223444444311 012222220 0112378899
Q ss_pred EecCCCC-CCccccccCCCceEEEe--cC-CHHHHHHHHHhhc
Q 011914 283 VTGNDFS-TLYAPLIRDGRMEKFYW--AP-TREDRIGVCSGIF 321 (475)
Q Consensus 283 ~TTN~~~-~Ld~aLlR~GRfd~~i~--~P-~~eeR~~Il~~~l 321 (475)
+|||... .++++|++ ||+..+. .| +.+++.+|++..+
T Consensus 192 ~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 192 GSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp EEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 9999754 89999999 9988676 35 7888889987654
No 76
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.18 E-value=2.8e-11 Score=107.63 Aligned_cols=91 Identities=10% Similarity=0.096 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
.+..+||+||||||||++|++|++.. +.+|+ ++++.+... ..+...|..| .+++|||||+|.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a-------~~g~l~ldei~~l 88 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA-------QGGTLVLSHPEHL 88 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH-------TTSCEEEECGGGS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc-------CCcEEEEcChHHC
Confidence 34559999999999999999999986 67898 999877643 2233455544 3679999999977
Q ss_pred ccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC
Q 011914 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (475)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~ 288 (475)
... +...|+.++. ....++.+|+|||.+
T Consensus 89 ~~~-------------~q~~Ll~~l~-------------~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 89 TRE-------------QQYHLVQLQS-------------QEHRPFRLIGIGDTS 116 (145)
T ss_dssp CHH-------------HHHHHHHHHH-------------SSSCSSCEEEEESSC
T ss_pred CHH-------------HHHHHHHHHh-------------hcCCCEEEEEECCcC
Confidence 432 2233444333 334567899999974
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.18 E-value=9.5e-11 Score=117.19 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=92.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccC-------------CCCChHHHHHHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-------------NAGEPAKLIRQRYREAADIIKK 220 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~-------------~~Ge~e~~Ir~~f~~A~~~~~~ 220 (475)
..+..+||+||||||||++|++|++.. +.+|+.++++.+... +.|... .....|..|
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a------ 95 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA------ 95 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH------
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc------
Confidence 345679999999999999999999975 578999998765310 011100 011233333
Q ss_pred CCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC-------CCCcc
Q 011914 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYA 293 (475)
Q Consensus 221 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~-------~~Ld~ 293 (475)
.+++|||||||.+... +...|+.++++.....+++. .....++.||+|||.. ..+++
T Consensus 96 -~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~riI~atn~~l~~~v~~g~fr~ 159 (304)
T 1ojl_A 96 -DGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDLAEEVSAGRFRQ 159 (304)
T ss_dssp -TTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBC--CCCBCCCEEEEEESSCHHHHHHHTSSCH
T ss_pred -CCCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCc--ccccCCeEEEEecCccHHHHHHhCCcHH
Confidence 3579999999987431 22445555553222222221 1223568899999985 23455
Q ss_pred ccccCCCceEE-EecCCHHHHH----HHHHhhcCC---------CCCChHHHHHHHhc
Q 011914 294 PLIRDGRMEKF-YWAPTREDRI----GVCSGIFRT---------DNVPKEDIVKLVDT 337 (475)
Q Consensus 294 aLlR~GRfd~~-i~~P~~eeR~----~Il~~~l~~---------~~v~~~~l~~l~~~ 337 (475)
.|.. ||... +.+|...+|. .|+++++.. ..++.+.+..+...
T Consensus 160 ~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 160 DLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp HHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred HHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 6666 66543 5577766553 355544321 24666667666654
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=4e-10 Score=113.59 Aligned_cols=144 Identities=15% Similarity=0.220 Sum_probs=92.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC-----CceEEEecCccccCCCCChHHHHHHHHHHHHHHHH--hCCceeEEec
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLFIN 229 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg-----~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~--~~~p~ILfID 229 (475)
+.|. ++||||||||||++|+++|+.+. ..++.++.+... | ...++........... ...+.|++||
T Consensus 45 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiD 117 (340)
T 1sxj_C 45 KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILD 117 (340)
T ss_dssp CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEET
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEe
Confidence 3444 99999999999999999999963 245666655321 2 2344444332210000 1247899999
Q ss_pred cccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cC
Q 011914 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-AP 308 (475)
Q Consensus 230 EiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~-~P 308 (475)
|+|.+... ....|+.+++ .....+.+|++||.+..+.+++++ |+..+-+ .+
T Consensus 118 e~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~n~~~~i~~~i~s--R~~~~~~~~l 169 (340)
T 1sxj_C 118 EADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALLS--QCTRFRFQPL 169 (340)
T ss_dssp TGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCC
T ss_pred CCCCCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEecCccccchhHHh--hceeEeccCC
Confidence 99977321 1233444444 334566788899999999999999 8875444 46
Q ss_pred CHHHHHHHHHhhcCCC--CCChHHHHHHH
Q 011914 309 TREDRIGVCSGIFRTD--NVPKEDIVKLV 335 (475)
Q Consensus 309 ~~eeR~~Il~~~l~~~--~v~~~~l~~l~ 335 (475)
+.++..+++..++... .++.+.+..++
T Consensus 170 ~~~~~~~~l~~~~~~~~~~i~~~~~~~i~ 198 (340)
T 1sxj_C 170 PQEAIERRIANVLVHEKLKLSPNAEKALI 198 (340)
T ss_dssp CHHHHHHHHHHHHHTTTCCBCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8888888888877544 34544443333
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.13 E-value=6.8e-12 Score=111.47 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=63.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r 238 (475)
+..+||+||||||||++|+++++..+ +|+.++++.+... .++..|.. ..+.+|||||+|.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-------~~~~~~~~-------a~~~~l~lDei~~l~~~- 90 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-------MPMELLQK-------AEGGVLYVGDIAQYSRN- 90 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-------CHHHHHHH-------TTTSEEEEEECTTCCHH-
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-------hhhhHHHh-------CCCCeEEEeChHHCCHH-
Confidence 45699999999999999999999988 8998988876532 24455553 34689999999987432
Q ss_pred CCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC
Q 011914 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (475)
Q Consensus 239 ~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~ 288 (475)
....|+.++++ ....++.+|+|||..
T Consensus 91 ------------~q~~Ll~~l~~------------~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 ------------IQTGITFIIGK------------AERCRVRVIASCSYA 116 (143)
T ss_dssp ------------HHHHHHHHHHH------------HTTTTCEEEEEEEEC
T ss_pred ------------HHHHHHHHHHh------------CCCCCEEEEEecCCC
Confidence 12334444430 113567899999865
No 80
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.13 E-value=5.4e-11 Score=146.92 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=94.3
Q ss_pred CeEEEEEcCCCccHHHHHH-HHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH-----------hCCceeE
Q 011914 159 PLILGIWGGKGQGKSFQCE-LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMCCL 226 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAk-aIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~-----------~~~p~IL 226 (475)
.+++||+||||||||++|+ ++++..+..++.++.+...+ ...+...++...+..+ .++++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 4789999999999999995 55554567777788765432 3344444443210000 2345799
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCC-----CCCceEEEecCCCC-----CCccccc
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-----NPRVPIIVTGNDFS-----TLYAPLI 296 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~-----~~~V~VI~TTN~~~-----~Ld~aLl 296 (475)
||||++.....+.+ ++ .+...|.++++ ..|.|.... ..++.+|+|+|.+. .|+++|+
T Consensus 1341 FiDEinmp~~d~yg-~q------~~lelLRq~le------~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1341 FCDEINLPKLDKYG-SQ------NVVLFLRQLME------KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEETTTCSCCCSSS-CC------HHHHHHHHHHH------TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EecccccccccccC-ch------hHHHHHHHHHh------cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 99999964433321 22 45566666554 334433221 24688999999994 8999999
Q ss_pred cCCCceEEEe-cCCHHHHHHHHHhhcC
Q 011914 297 RDGRMEKFYW-APTREDRIGVCSGIFR 322 (475)
Q Consensus 297 R~GRfd~~i~-~P~~eeR~~Il~~~l~ 322 (475)
| ||..+.. .|+.+++..|+..++.
T Consensus 1408 R--rf~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1408 R--HAAILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp T--TEEEEECCCCTTTHHHHHHHHHHH
T ss_pred h--eeeEEEeCCCCHHHHHHHHHHHHH
Confidence 9 9944433 6999999999987764
No 81
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.12 E-value=4.4e-11 Score=127.82 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=80.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCC--ceEEEecC-----ccccCCCCChHHHHHHHHHHHHHHHHhC---CceeEEec
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-----ELESGNAGEPAKLIRQRYREAADIIKKG---KMCCLFIN 229 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~--~~i~vs~s-----~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~---~p~ILfID 229 (475)
..+||+||||||||++|+++|+.++. +|..+.+. ++...+.+..... ...|..+. .+ .++|||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~----~g~l~~~~IL~ID 116 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLT----SGYLPEAEIVFLD 116 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCC----TTSGGGCSEEEEE
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhh----ccCCCcceeeeHH
Confidence 47999999999999999999998853 44444332 2222122111100 11121111 22 46799999
Q ss_pred cccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCC---CccccccCCCceEEEe
Q 011914 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYW 306 (475)
Q Consensus 230 EiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~---Ld~aLlR~GRfd~~i~ 306 (475)
||+.+.+ .+...|+.+++ ...+.++|.. ...+..++|+|||.... +.+++++ ||...+.
T Consensus 117 EI~r~~~-------------~~q~~LL~~le-e~~v~i~G~~--~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~ 178 (500)
T 3nbx_X 117 EIWKAGP-------------AILNTLLTAIN-ERQFRNGAHV--EKIPMRLLVAASNELPEADSSLEALYD--RMLIRLW 178 (500)
T ss_dssp SGGGCCH-------------HHHHHHHHHHH-SSEEECSSSE--EECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEE
T ss_pred hHhhhcH-------------HHHHHHHHHHH-HHhccCCCCc--CCcchhhhhhccccCCCccccHHHHHH--HHHHHHH
Confidence 9975422 33455666665 2344445541 12233356888886332 3348999 9988777
Q ss_pred --cCCH-HHHHHHHHhhc
Q 011914 307 --APTR-EDRIGVCSGIF 321 (475)
Q Consensus 307 --~P~~-eeR~~Il~~~l 321 (475)
.|+. +++.+|++...
T Consensus 179 v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 179 LDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCSCCCHHHHHHHHTCCC
T ss_pred HHHhhhhhhHHHHHhccc
Confidence 4655 77899998655
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.11 E-value=1.5e-11 Score=134.10 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=85.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEE----ecCccccCCCCChHH----HHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNAGEPAK----LIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~v----s~s~l~s~~~Ge~e~----~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
.+||+||||||||++|+++|+.++..++.. ++..+.......... .-...+.. ...+||||||||
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~-------A~~gil~IDEid 401 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVL-------ADGGIAVIDEID 401 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHH-------HSSSEECCTTTT
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEe-------cCCCcEEeehhh
Confidence 799999999999999999999987654432 112222111110000 00011222 235799999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCC--CccccCCCCCceEEEecCCCC-------------CCcccccc
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP--GMYNQEENPRVPIIVTGNDFS-------------TLYAPLIR 297 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ld--g~~~~~~~~~V~VI~TTN~~~-------------~Ld~aLlR 297 (475)
.+... +...|++.+++. .+.+. |. ......++.||+|||... .|+++|++
T Consensus 402 ~l~~~-------------~q~~Ll~~le~~-~i~i~~~g~-~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~ 466 (595)
T 3f9v_A 402 KMRDE-------------DRVAIHEAMEQQ-TVSIAKAGI-VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS 466 (595)
T ss_dssp CCCSH-------------HHHHHHHHHHSS-SEEEESSSS-EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG
T ss_pred hCCHh-------------HhhhhHHHHhCC-EEEEecCCc-EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh
Confidence 87432 234555655522 22211 21 112246788999999986 89999999
Q ss_pred CCCceEEEe---cCCHHHHHHHHHhhcCC
Q 011914 298 DGRMEKFYW---APTREDRIGVCSGIFRT 323 (475)
Q Consensus 298 ~GRfd~~i~---~P~~eeR~~Il~~~l~~ 323 (475)
|||..+. .|+.+ ...|.++++..
T Consensus 467 --RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 467 --RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp --GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred --hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9986555 47777 88888877764
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=5.5e-10 Score=112.05 Aligned_cols=129 Identities=7% Similarity=-0.062 Sum_probs=91.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh------CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el------g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
+..+|||||||+|||++|+++|+.+ ...++.+++.. . .-....+|++.+.+...--.....|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 5789999999999999999999974 34677776542 0 12245677777766311002335799999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEecCCHHH
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 312 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~~P~~ee 312 (475)
.+... ....|+..++ ++.+++.+|++||.++.|.+++++ | -..+..|+.++
T Consensus 93 ~lt~~-------------a~naLLk~LE-------------ep~~~t~fIl~t~~~~kl~~tI~S--R-~~~f~~l~~~~ 143 (305)
T 2gno_A 93 RMTQQ-------------AANAFLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKS--R-VFRVVVNVPKE 143 (305)
T ss_dssp GBCHH-------------HHHHTHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT--T-SEEEECCCCHH
T ss_pred HhCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEECChHhChHHHHc--e-eEeCCCCCHHH
Confidence 87321 1244555444 556778888888999999999999 7 33344688888
Q ss_pred HHHHHHhhc
Q 011914 313 RIGVCSGIF 321 (475)
Q Consensus 313 R~~Il~~~l 321 (475)
..+.++..+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888776
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.04 E-value=1.2e-09 Score=99.79 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=55.3
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEecCccccCCCCChHHHHHHHHHHHH--
Q 011914 142 VVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAA-- 215 (475)
Q Consensus 142 ~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-- 215 (475)
.....++.+........+.+++|+||||||||+|++++++.+ |..++.++..++.. .+...+....
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~ 92 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF--------RLKHLMDEGKDT 92 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH--------HHHHHHHHTCCS
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--------HHHHHhcCchHH
Confidence 345556666655555567899999999999999999999986 66666666654431 1222221100
Q ss_pred HH-HHhCCceeEEecccccc
Q 011914 216 DI-IKKGKMCCLFINDLDAG 234 (475)
Q Consensus 216 ~~-~~~~~p~ILfIDEiDal 234 (475)
.. .....|.+|+|||++..
T Consensus 93 ~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 93 KFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHTCSEEEEETCSSS
T ss_pred HHHHHhcCCCEEEEeCCCCC
Confidence 01 11346889999999854
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.95 E-value=9.3e-10 Score=131.13 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccc------------cCCCCC----hHHHHHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE------------SGNAGE----PAKLIRQRYREAADII 218 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~------------s~~~Ge----~e~~Ir~~f~~A~~~~ 218 (475)
..+.+|||||||||||+||++++.+. |-+.+.|+..++. ++|+++ +|+.++.+|..|+
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar--- 1157 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR--- 1157 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH---
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHH---
Confidence 33459999999999999999999885 4566666666544 677788 8999999999887
Q ss_pred HhCCceeEEeccccccccCCC---CCc--ccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC
Q 011914 219 KKGKMCCLFINDLDAGAGRMG---GTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 289 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~~r~---~~~--~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~ 289 (475)
...||+||+|++|+++++++ ... +.....+.+++.|.++ ++. ....+|.|| +||+..
T Consensus 1158 -~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~---------~~~---~~~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1158 -SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL---------AGN---LKQSNTLLI-FINQIR 1219 (1706)
T ss_dssp -HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHH---------HHH---HHHTTCEEE-EEECEE
T ss_pred -hcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHH---------Hhh---hccCCeEEE-Eecccc
Confidence 89999999999999998732 111 1133344466555543 332 334677666 777653
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.87 E-value=1.6e-08 Score=93.67 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=45.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCCh-HHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~-e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDa 233 (475)
.|.+++|+||||||||++|+++++++ +.+++.++++++...+.... ...+...+... ..+.+|+|||++.
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~lilDei~~ 126 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYI------KKVPVLMLDDLGA 126 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHH------HHSSEEEEEEECC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHh------cCCCEEEEcCCCC
Confidence 34899999999999999999999987 67777787765432110000 00011112211 1246999999976
Q ss_pred cc
Q 011914 234 GA 235 (475)
Q Consensus 234 l~ 235 (475)
..
T Consensus 127 ~~ 128 (202)
T 2w58_A 127 EA 128 (202)
T ss_dssp C-
T ss_pred Cc
Confidence 53
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.85 E-value=2.5e-09 Score=108.12 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=69.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec--CccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA--GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~--s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
|+.+...++|+||||||||+||.++|.+.|...++++. .+..+.+..+.+..++.+++... ... +||||+++
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~----~~~--LLVIDsI~ 192 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML----QHR--VIVIDSLK 192 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH----HCS--EEEEECCT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHh----hCC--EEEEeccc
Confidence 45555678999999999999999999876654333443 44444444455555555554332 444 99999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCcccc
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 295 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aL 295 (475)
.+.....+........+.+.+.|..|.. . ....++.+|+++| +...++++
T Consensus 193 aL~~~~~~~s~~G~v~~~lrqlL~~L~~---------~---~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 193 NVIGAAGGNTTSGGISRGAFDLLSDIGA---------M---AASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp TTC-----------CCHHHHHHHHHHHH---------H---HHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccccccchHHHHHHHHHHHHHH---------H---HhhCCCEEEEEeC-CcccchhH
Confidence 9865433211111112334444443322 0 1134677888888 55666664
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.80 E-value=2.5e-08 Score=101.66 Aligned_cols=159 Identities=10% Similarity=0.128 Sum_probs=91.8
Q ss_pred CCeEEEE--EcCCCccHHHHHHHHHHHh---------CCceEEEecCccccC----------------CCCChHHHHHHH
Q 011914 158 VPLILGI--WGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKLIRQR 210 (475)
Q Consensus 158 ~p~glLL--~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s~----------------~~Ge~e~~Ir~~ 210 (475)
.+..++| +||||+|||++++.+++++ +..++.+++....+. ..+.+.. .+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~ 125 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPAL---DI 125 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHH---HH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HH
Confidence 4678899 9999999999999999886 556777776322100 0111111 11
Q ss_pred HHHHHHHHH-hCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCC--CCceEEEecCC
Q 011914 211 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN--PRVPIIVTGND 287 (475)
Q Consensus 211 f~~A~~~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~--~~V~VI~TTN~ 287 (475)
+....+.+. ...|.||+|||++.+...... . ..+...|+.++. .++ ... .++.||+|||.
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-~------~~~l~~l~~~~~-----~~~-----~~~~~~~v~lI~~~~~ 188 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDEFQSMLSSPRI-A------AEDLYTLLRVHE-----EIP-----SRDGVNRIGFLLVASD 188 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-C------HHHHHHHHTHHH-----HSC-----CTTSCCBEEEEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-c------hHHHHHHHHHHH-----hcc-----cCCCCceEEEEEEecc
Confidence 222222222 467999999999988643110 1 122233333332 010 113 67889999987
Q ss_pred CC---CCc---cccccCCCceEEEe--cCCHHHHHHHHHhhcC----CCCCChHHHHHHHhcC
Q 011914 288 FS---TLY---APLIRDGRMEKFYW--APTREDRIGVCSGIFR----TDNVPKEDIVKLVDTF 338 (475)
Q Consensus 288 ~~---~Ld---~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~----~~~v~~~~l~~l~~~~ 338 (475)
++ .++ +.+.+ |+...+. .++.++..+|+...+. ...++.+.+..+....
T Consensus 189 ~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~ 249 (412)
T 1w5s_A 189 VRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY 249 (412)
T ss_dssp THHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH
T ss_pred ccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 65 234 55656 4544455 3689999999976543 2345666555554443
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=1.1e-08 Score=91.85 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=47.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
....++|+||+|+|||+|+++++..+ |...++++..++... +. ..+|.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~----~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DA----AFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GG----GGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HH----HhCCCEEEEeCcccc
Confidence 44679999999999999999999987 777888888776532 11 235889999999875
Q ss_pred c
Q 011914 235 A 235 (475)
Q Consensus 235 ~ 235 (475)
.
T Consensus 96 ~ 96 (149)
T 2kjq_A 96 G 96 (149)
T ss_dssp C
T ss_pred C
Confidence 3
No 90
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.71 E-value=7.9e-09 Score=103.52 Aligned_cols=83 Identities=12% Similarity=0.195 Sum_probs=48.6
Q ss_pred HHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhC----CceEEEecCccccCCCCC-hHHHHHHHHHHHHHHHHh
Q 011914 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKK 220 (475)
Q Consensus 146 i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg----~~~i~vs~s~l~s~~~Ge-~e~~Ir~~f~~A~~~~~~ 220 (475)
.++.++.......+.+++||||||||||+||.++|+++. .+++.++.+++...+... ....+...+.. .
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~------~ 212 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA------V 212 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHH------H
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHH------h
Confidence 444454422212358899999999999999999998754 777777776543211100 00001111111 1
Q ss_pred CCceeEEecccccc
Q 011914 221 GKMCCLFINDLDAG 234 (475)
Q Consensus 221 ~~p~ILfIDEiDal 234 (475)
..+.+|||||++..
T Consensus 213 ~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 213 KNVPVLILDDIGAE 226 (308)
T ss_dssp HTSSEEEEETCCC-
T ss_pred cCCCEEEEcCCCCC
Confidence 23569999999765
No 91
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.68 E-value=3e-08 Score=93.49 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH--------hC-CceEEEecCccccCCC----------CChHH--HHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK--------MG-INPIMMSAGELESGNA----------GEPAK--LIRQRYREAAD 216 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e--------lg-~~~i~vs~s~l~s~~~----------Ge~e~--~Ir~~f~~A~~ 216 (475)
.+.+.|++|+||+|||++|...+.. .| .+++..+...|...+. ..... ....+++.+.
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~- 82 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK- 82 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-
Confidence 3568899999999999998876444 34 5555555554432221 11100 0012222110
Q ss_pred HHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccc
Q 011914 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296 (475)
Q Consensus 217 ~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLl 296 (475)
...+.++||+|||++.+++.+..... .. ..|.++.. ......-||++|+.++.|+.+|+
T Consensus 83 -~~~~~~~vliIDEAq~l~~~~~~~~e---~~----rll~~l~~-------------~r~~~~~iil~tq~~~~l~~~lr 141 (199)
T 2r2a_A 83 -KPENIGSIVIVDEAQDVWPARSAGSK---IP----ENVQWLNT-------------HRHQGIDIFVLTQGPKLLDQNLR 141 (199)
T ss_dssp -SGGGTTCEEEETTGGGTSBCCCTTCC---CC----HHHHGGGG-------------TTTTTCEEEEEESCGGGBCHHHH
T ss_pred -ccccCceEEEEEChhhhccCccccch---hH----HHHHHHHh-------------cCcCCeEEEEECCCHHHHhHHHH
Confidence 01566899999999999765421111 11 12222211 23456678899999999999988
Q ss_pred cCCCceEEEec
Q 011914 297 RDGRMEKFYWA 307 (475)
Q Consensus 297 R~GRfd~~i~~ 307 (475)
+ |++..+.+
T Consensus 142 ~--ri~~~~~l 150 (199)
T 2r2a_A 142 T--LVRKHYHI 150 (199)
T ss_dssp T--TEEEEEEE
T ss_pred H--HhheEEEE
Confidence 8 99998883
No 92
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.63 E-value=4.1e-08 Score=93.24 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=68.3
Q ss_pred HHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCce
Q 011914 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 224 (475)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ 224 (475)
..++.+++ +++...++|||||||||||++|.++|+.+.-.++....+. +.+ .+.. .....
T Consensus 46 ~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~------l~~~k 105 (212)
T 1tue_A 46 GALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEP------LTDTK 105 (212)
T ss_dssp HHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGG------GTTCS
T ss_pred HHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcc------cCCCC
Confidence 33444443 2334478999999999999999999999754332211110 000 0111 12245
Q ss_pred eEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcccc-CCCCCceEEEecCCC---CCCccccccCCC
Q 011914 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGNDF---STLYAPLIRDGR 300 (475)
Q Consensus 225 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~-~~~~~V~VI~TTN~~---~~Ld~aLlR~GR 300 (475)
||+|||+|.-. .+.+...+.++++. ..+.+|-.+.. ......|+|+|||.. +...+.|.+ |
T Consensus 106 IiiLDEad~~~------------~~~~d~~lrn~ldG-~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--R 170 (212)
T 1tue_A 106 VAMLDDATTTC------------WTYFDTYMRNALDG-NPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--R 170 (212)
T ss_dssp SEEEEEECHHH------------HHHHHHHCHHHHHT-CCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--S
T ss_pred EEEEECCCchh------------HHHHHHHHHHHhCC-CcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--h
Confidence 99999998321 11223344554441 12333322111 112467999999973 333456777 7
Q ss_pred ceEEEe
Q 011914 301 MEKFYW 306 (475)
Q Consensus 301 fd~~i~ 306 (475)
+..+-+
T Consensus 171 i~~f~F 176 (212)
T 1tue_A 171 ITVFEF 176 (212)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 765544
No 93
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.55 E-value=1.6e-07 Score=96.79 Aligned_cols=118 Identities=9% Similarity=0.076 Sum_probs=75.6
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal 234 (475)
+++.+.+++|+||||+|||+++++++...+-.++.+..+. .. . .|... ...+..++++||++.+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~-------~~---~--~~~lg----~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL-------DR---L--NFELG----VAIDQFLVVFEDVKGT 228 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT-------TT---H--HHHHG----GGTTCSCEEETTCCCS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc-------hh---H--HHHHH----HhcchhHHHHHHHHHH
Confidence 4567789999999999999999999998876554332221 10 0 11111 1345677899999988
Q ss_pred cc-CCCCCcccchhhHHH-HHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceEEEecCC
Q 011914 235 AG-RMGGTTQYTVNNQMV-NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309 (475)
Q Consensus 235 ~~-~r~~~~~~~~~~~~v-~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~~i~~P~ 309 (475)
.. .+.-.... ..+ ...+.+.++ ..+.|+++||+++.+ ++++|+||++..++.+.
T Consensus 229 ~~~~r~l~~~~----~~~~~~~l~~~ld----------------G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 229 GGESRDLPSGQ----GINNLDNLRDYLD----------------GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTTTCCCCS----HHHHHHTTHHHHH----------------CSSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHhhccccC----cchHHHHHHHHhc----------------CCCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 75 22211100 111 011222122 246789999999999 78999999999888554
No 94
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.46 E-value=9.3e-07 Score=96.24 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=57.7
Q ss_pred CCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcc---------ccCCCCCceEEEecCCC--C
Q 011914 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY---------NQEENPRVPIIVTGNDF--S 289 (475)
Q Consensus 221 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~---------~~~~~~~V~VI~TTN~~--~ 289 (475)
..+.+|||||++.+.+ .+...|+..+++. .+...|.. ......++.||+|||+. +
T Consensus 200 a~~gvL~LDEi~~l~~-------------~~q~~Ll~~Le~~-~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 200 AHKGVLFIDEIATLSL-------------KMQQSLLTAMQEK-KFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp TTTSEEEETTGGGSCH-------------HHHHHHHHHHHHS-EECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred cCCCEEEEechhhCCH-------------HHHHHHHHHHHcC-cEEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 3567999999998622 2234444444421 12221110 00112467799999987 6
Q ss_pred CCccccccCCCce---EEEecC-----CHHHHHHHHHhhcC-------CCCCChHHHHHHHhcC
Q 011914 290 TLYAPLIRDGRME---KFYWAP-----TREDRIGVCSGIFR-------TDNVPKEDIVKLVDTF 338 (475)
Q Consensus 290 ~Ld~aLlR~GRfd---~~i~~P-----~~eeR~~Il~~~l~-------~~~v~~~~l~~l~~~~ 338 (475)
.++++|++ ||+ ..+.++ +.+....+++.+.. ...++.+.+..+...+
T Consensus 266 ~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 266 KMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp HSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred hcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 79999999 886 344432 44555555543221 1356777777776643
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.40 E-value=9.1e-07 Score=109.85 Aligned_cols=140 Identities=10% Similarity=0.092 Sum_probs=94.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r 238 (475)
..++++.||+|||||.+++++|+.+|.+++.+++++-.. ...+..+|..+. ..++.++|||++.+-..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~-----~~Gaw~~~DE~nr~~~e- 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGIT-----QIGAWGCFDEFNRLDEK- 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHH-----HHTCEEEEETTTSSCHH-
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHH-----hcCCEeeehhhhhcChH-
Confidence 367899999999999999999999999999999986542 455667777653 33689999999975332
Q ss_pred CCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecC----CCCCCccccccCCCceEEEe-cCCHHHH
Q 011914 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 313 (475)
Q Consensus 239 ~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN----~~~~Ld~aLlR~GRfd~~i~-~P~~eeR 313 (475)
.. ++-.+.+...+..+.+....+.+.|... .-.+...|++|.| ....|+++|++ ||-.+.. .|+.+..
T Consensus 713 ---vL-s~l~~~l~~i~~al~~~~~~i~~~g~~i-~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr~v~m~~Pd~~~i 785 (2695)
T 4akg_A 713 ---VL-SAVSANIQQIQNGLQVGKSHITLLEEET-PLSPHTAVFITLNPGYNGRSELPENLKK--SFREFSMKSPQSGTI 785 (2695)
T ss_dssp ---HH-HHHHHHHHHHHHHHHHTCSEEECSSSEE-ECCTTCEEEEEECCCSSSSCCCCHHHHT--TEEEEECCCCCHHHH
T ss_pred ---HH-HHHHHHHHHHHHHHHcCCcEEeeCCcEE-ecCCCceEEEEeCCCccCcccccHHHHh--heEEEEeeCCCHHHH
Confidence 11 1111122211222223333455555311 2245666888888 56689999999 8854433 6999998
Q ss_pred HHHH
Q 011914 314 IGVC 317 (475)
Q Consensus 314 ~~Il 317 (475)
.+|+
T Consensus 786 ~ei~ 789 (2695)
T 4akg_A 786 AEMI 789 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8885
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.37 E-value=3e-06 Score=83.77 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=85.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc------c---------CCCCC---------------------h
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE------S---------GNAGE---------------------P 203 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~------s---------~~~Ge---------------------~ 203 (475)
..++|+||+|+|||+|++.++++.+ .+.+++.... + ...+. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5899999999999999999999986 5555543221 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEE
Q 011914 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283 (475)
Q Consensus 204 e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~ 283 (475)
...+..+++...+.++...|.+|+|||++.+..... . ....+...|..+.+ . ..++.+|+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~---~~~~~~~~L~~~~~-------------~-~~~~~~il 169 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---R---GGKELLALFAYAYD-------------S-LPNLKIIL 169 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---T---TTHHHHHHHHHHHH-------------H-CTTEEEEE
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---c---chhhHHHHHHHHHH-------------h-cCCeEEEE
Confidence 011223333322223233499999999998754110 0 01123344444333 1 14677888
Q ss_pred ecCCCC---------CCccccccCCCceEEEe--cCCHHHHHHHHHhhcCCC--CCChHHHHHHHhcC
Q 011914 284 TGNDFS---------TLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF 338 (475)
Q Consensus 284 TTN~~~---------~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~ 338 (475)
|+.... ....++. ||+...+. ..+.++..+++...+... .++.+.+..+....
T Consensus 170 ~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t 235 (350)
T 2qen_A 170 TGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELL 235 (350)
T ss_dssp EESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred ECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 775432 1122232 35555555 358888899998776543 35555555554443
No 97
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.35 E-value=9e-07 Score=106.97 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=58.7
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcccc----C------------CCCChHHHHHHHHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----G------------NAGEPAKLIRQRYREAA 215 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s----~------------~~Ge~e~~Ir~~f~~A~ 215 (475)
|+.++.+++|+||||||||+||.+++.+. |....+++...... . .+...++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 57889999999999999999999998874 55666666654321 1 12244556655555444
Q ss_pred HHHHhCCceeEEeccccccccC
Q 011914 216 DIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 216 ~~~~~~~p~ILfIDEiDal~~~ 237 (475)
..+|++|||||++.+.+.
T Consensus 1503 ----~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1503 ----SGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp ----HTCCSEEEESCGGGCCCH
T ss_pred ----cCCCCEEEEcChhHhccc
Confidence 899999999999999874
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.33 E-value=7.9e-06 Score=80.83 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=30.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCc
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~ 194 (475)
..++|+||+|+|||+|++.++++.+..++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 48999999999999999999999877777777654
No 99
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.28 E-value=2.9e-06 Score=83.52 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCC
Q 011914 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (475)
Q Consensus 143 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~ 185 (475)
....++++++-. ..+..+|+||||||||||++|++||+..+.
T Consensus 89 ~~~~l~~~l~~~-~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 89 AASVFLGWATKK-FGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHHTTC-STTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCC-CCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 344556665531 133468999999999999999999998665
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.23 E-value=7.2e-07 Score=111.56 Aligned_cols=141 Identities=12% Similarity=0.181 Sum_probs=90.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH-hCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHH------------hCCceeE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK-MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK------------KGKMCCL 226 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e-lg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~------------~~~p~IL 226 (475)
+.+||+||||||||+++...... .+..++.++++.-. +...+...++...+..+ .++..||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 45999999999999887654444 45566777776433 23444455542110000 1334699
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCcccc-----CCCCCceEEEecCCC-----CCCccccc
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-----EENPRVPIIVTGNDF-----STLYAPLI 296 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~-----~~~~~V~VI~TTN~~-----~~Ld~aLl 296 (475)
||||++.-....- ++ +.+...|.++++. .|.|.. ....++.+|+|.|.+ ..|++.|+
T Consensus 1379 FiDDiNmp~~D~y-Gt------Q~~ielLrqlld~------~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~ 1445 (3245)
T 3vkg_A 1379 FCDEINLPSTDKY-GT------QRVITFIRQMVEK------GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFL 1445 (3245)
T ss_dssp EETTTTCCCCCTT-SC------CHHHHHHHHHHHH------SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EecccCCCCcccc-cc------ccHHHHHHHHHHc------CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHH
Confidence 9999985433222 22 3566777776661 222221 123577899999987 46999999
Q ss_pred cCCCceEEEe-cCCHHHHHHHHHhhc
Q 011914 297 RDGRMEKFYW-APTREDRIGVCSGIF 321 (475)
Q Consensus 297 R~GRfd~~i~-~P~~eeR~~Il~~~l 321 (475)
| ||..+.. .|+.++...|+..++
T Consensus 1446 r--~F~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1446 R--HAPILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp T--TCCEEECCCCCHHHHHHHHHHHH
T ss_pred h--hceEEEeCCCCHHHHHHHHHHHH
Confidence 9 9988666 799999999987554
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.11 E-value=8e-06 Score=75.71 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=33.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~ 194 (475)
|+.+...++|+||||+|||+++..++...+...++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5666778999999999999999999986677777777643
No 102
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.07 E-value=1.8e-05 Score=81.45 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=63.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhC---CceEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCcee
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMCC 225 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p~I 225 (475)
..++|+|++|||||++|++|..... .+|+.++++.+.. ...-..+|...+ ..++.....+
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~------~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gt 234 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR------DIFEAELFGYEKGAFTGAVSSKEGFFELADGGT 234 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH------HHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH------HHHHHHhcCCCCCCCCCcccccCCceeeCCCcE
Confidence 4479999999999999999998864 5899999986531 011112221100 0111233579
Q ss_pred EEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC
Q 011914 226 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (475)
Q Consensus 226 LfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~ 288 (475)
||||||+.+.. .+...|+..+++-+...++|. .....++.||+|||..
T Consensus 235 lfldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~ 282 (387)
T 1ny5_A 235 LFLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRN 282 (387)
T ss_dssp EEEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSC
T ss_pred EEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCCCC
Confidence 99999998743 223445554442111122222 1223467899999973
No 103
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.07 E-value=1e-05 Score=82.84 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=85.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCc--eEEEecCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCceeE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMCCL 226 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~--~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~-----------~~~~~~~p~IL 226 (475)
..++++|++||||+.+|+++....+.. |+.++|+.+-... .-..+|.... ..++......|
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~------~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtl 226 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQEL------AESELFGHEKGAFTGALTRKKGKLELADQGTL 226 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTT------HHHHHHEECSCSSSSCCCCEECHHHHTTTSEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHH------HHHHhcCccccccCCcccccCChHhhcCCCeE
Confidence 348999999999999999999887643 9999998764211 1112221000 00112335689
Q ss_pred EeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCCccccccCCCceE---
Q 011914 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--- 303 (475)
Q Consensus 227 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~Ld~aLlR~GRfd~--- 303 (475)
|||||+.+-. .+...|+..+++-+...+.+. ....-++.||+|||.. + ..+...|+|..
T Consensus 227 fldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~--l-~~~v~~g~fr~dL~ 288 (368)
T 3dzd_A 227 FLDEVGELDQ-------------RVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNKN--L-EEEIKKGNFREDLY 288 (368)
T ss_dssp EEETGGGSCH-------------HHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESSC--H-HHHHHTTSSCHHHH
T ss_pred EecChhhCCH-------------HHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCCC--H-HHHHHcCCccHHHH
Confidence 9999997733 233445555542222222221 1122467799999853 1 12333444432
Q ss_pred ------EEecCCHHHH----HHHHHhhcCC---------CCCChHHHHHHHhc
Q 011914 304 ------FYWAPTREDR----IGVCSGIFRT---------DNVPKEDIVKLVDT 337 (475)
Q Consensus 304 ------~i~~P~~eeR----~~Il~~~l~~---------~~v~~~~l~~l~~~ 337 (475)
.+.+|...+| ..++++++.. ..++.+.+..|...
T Consensus 289 ~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 289 YRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp HHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred HHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 3556765554 3444444421 24666667666653
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.05 E-value=1.1e-05 Score=74.39 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCce
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINP 187 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~ 187 (475)
.+.|.||+|+|||+|++.|+..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999987544
No 105
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.91 E-value=2.5e-05 Score=73.50 Aligned_cols=84 Identities=12% Similarity=0.138 Sum_probs=53.5
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHH--h-------CCceEEEecCccccC--------CCCC--------------
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK--M-------GINPIMMSAGELESG--------NAGE-------------- 202 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~e--l-------g~~~i~vs~s~l~s~--------~~Ge-------------- 202 (475)
.|++....++|+||||+|||++++.++.. + +...++++....... ..|.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 35666778999999999999999999985 2 345666765431100 0010
Q ss_pred -hHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 011914 203 -PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 203 -~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 237 (475)
+...+..++..+.+.++...|.+|+|||+..+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11112223333444555678999999999988643
No 106
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.83 E-value=9.2e-06 Score=85.85 Aligned_cols=126 Identities=13% Similarity=0.064 Sum_probs=69.8
Q ss_pred eEEEEEcCCCccHHHHHHHH-HHHhCCceEEEecC-----ccccCCCCChHHHH-HHHHHHHHHHHHhCCceeEEecccc
Q 011914 160 LILGIWGGKGQGKSFQCELV-FAKMGINPIMMSAG-----ELESGNAGEPAKLI-RQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaI-A~elg~~~i~vs~s-----~l~s~~~Ge~e~~I-r~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
..+||.|+||| ||++|+++ ++-+... ++++.. .+.....+.+...+ ...+. .....|+|||||+
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~pR~-~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~-------LAdgGvl~lDEIn 310 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAPRG-VYVDLRRTELTDLTAVLKEDRGWALRAGAAV-------LADGGILAVDHLE 310 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCSSE-EEEEGGGCCHHHHSEEEEESSSEEEEECHHH-------HTTTSEEEEECCT
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCCCe-EEecCCCCCccCceEEEEcCCCcccCCCeeE-------EcCCCeeehHhhh
Confidence 36999999999 99999999 5544332 222210 01000000000000 00111 1224699999999
Q ss_pred ccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC-----------CCccccccCCCc
Q 011914 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----------TLYAPLIRDGRM 301 (475)
Q Consensus 233 al~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~-----------~Ld~aLlR~GRf 301 (475)
.+-. .+...|++.+. ...|.+.|. .-..+..||+|+|... .|+++++. ||
T Consensus 311 ~~~~-------------~~qsaLlEaME-e~~VtI~G~---~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RF 371 (506)
T 3f8t_A 311 GAPE-------------PHRWALMEAMD-KGTVTVDGI---ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HF 371 (506)
T ss_dssp TCCH-------------HHHHHHHHHHH-HSEEEETTE---EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TC
T ss_pred hCCH-------------HHHHHHHHHHh-CCcEEECCE---EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--he
Confidence 7632 22345555444 344455554 3346788999999865 78999999 99
Q ss_pred eEEEe---cCCHHHH
Q 011914 302 EKFYW---APTREDR 313 (475)
Q Consensus 302 d~~i~---~P~~eeR 313 (475)
|.++. .|+.+.-
T Consensus 372 DLi~i~~d~pd~e~d 386 (506)
T 3f8t_A 372 DLIAFLGVDPRPGEP 386 (506)
T ss_dssp SEEEETTC-------
T ss_pred eeEEEecCCCChhHh
Confidence 99887 3665543
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.82 E-value=7.7e-05 Score=93.75 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=93.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~ 239 (475)
.|..+.||+|||||.+++.+|+.+|..++.++|++-. ..+.+..+|.-+. ...+-.+|||++.+-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~~-----~~GaW~cfDEfNrl~~~-- 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGLC-----QCGAWGCFDEFNRLEER-- 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHHH-----HHTCEEEEETTTSSCHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhHh-----hcCcEEEehhhhcCCHH--
Confidence 4567899999999999999999999999999998543 2455666776542 34677889999976321
Q ss_pred CCcccchhhHHHHHHHHhhhcCCCcccCC-CccccCCCCCceEEEecC----CCCCCccccccCCCceEEEe-cCCHHHH
Q 011914 240 GTTQYTVNNQMVNATLMNIADNPTNVQLP-GMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 313 (475)
Q Consensus 240 ~~~~~~~~~~~v~~~Ll~l~d~~~~v~ld-g~~~~~~~~~V~VI~TTN----~~~~Ld~aLlR~GRfd~~i~-~P~~eeR 313 (475)
--++-.+.+......+.+....+.+. |.-. .-.+...|++|.| ....||..|+. ||--+-. .|+.+..
T Consensus 672 ---vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i-~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 672 ---ILSAVSQQIQTIQVALKENSKEVELLGGKNI-SLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRSMAMIKPDREMI 745 (3245)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCSEECCC---CE-ECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEEEECCSCCHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCeEEecCCCEE-eecCCeEEEEEeCCCccCcccChHHHHh--hcEEEEEeCCCHHHH
Confidence 11111222222222333445566666 5311 2345677888988 45689999999 7755444 7999988
Q ss_pred HHHH
Q 011914 314 IGVC 317 (475)
Q Consensus 314 ~~Il 317 (475)
.+|+
T Consensus 746 ~ei~ 749 (3245)
T 3vkg_A 746 AQVM 749 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 108
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.82 E-value=3.2e-05 Score=93.69 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=62.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCC----CC--------ChHHHHHHHHHHHHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AG--------EPAKLIRQRYREAADIIK 219 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~----~G--------e~e~~Ir~~f~~A~~~~~ 219 (475)
|+.+...++|+|+||+|||+||..+|..+ +.++++++..+....+ .| ..+..+..++..++.+.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 57778899999999999999999999885 4468888876544332 12 112336667777776666
Q ss_pred hCCceeEEecccccccc
Q 011914 220 KGKMCCLFINDLDAGAG 236 (475)
Q Consensus 220 ~~~p~ILfIDEiDal~~ 236 (475)
...|++||||.+..+..
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 78899999999999976
No 109
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.78 E-value=3e-05 Score=69.74 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
|..|+|.|+||+|||++++++++.++.+++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 4679999999999999999999999988887654
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.77 E-value=7.9e-05 Score=69.14 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=28.4
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEe
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs 191 (475)
++.....++|+||||+|||++++.++... +-.++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566789999999999999999998653 44555544
No 111
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.76 E-value=6.3e-05 Score=76.89 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=55.3
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCC----CCC--------hHHHHHHHHHHHHHHH
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGE--------PAKLIRQRYREAADII 218 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~----~Ge--------~e~~Ir~~f~~A~~~~ 218 (475)
.|+.+...++|+||||+|||+||..++..+ +-.+++++........ .|- ....+.++...+..++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 467777889999999999999999998873 5567777765422100 000 0011223334444455
Q ss_pred HhCCceeEEecccccccc
Q 011914 219 KKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~ 236 (475)
+...+.+++||.+-.+.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 568899999999998876
No 112
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.75 E-value=0.00029 Score=70.52 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=90.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CC-ceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~-~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
+.+..+|||||+|.||+..++.+++.+ +. ++..+... ++ ..++++.+.+...--.....|++|||++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------PN--TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------TT--CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------CC--CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 456789999999999999999998874 32 22222111 11 2345566555422225667899999998
Q ss_pred c-cccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCC------CCCccccccCCCceEEE
Q 011914 233 A-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF------STLYAPLIRDGRMEKFY 305 (475)
Q Consensus 233 a-l~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~------~~Ld~aLlR~GRfd~~i 305 (475)
. +.. .....|+..++ ++.+++.+|++++.+ ..+.+++.+ |...+-
T Consensus 87 ~kl~~-------------~~~~aLl~~le-------------~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~~~ 138 (343)
T 1jr3_D 87 NGPNA-------------AINEQLLTLTG-------------LLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVT 138 (343)
T ss_dssp SCCCT-------------THHHHHHHHHT-------------TCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEEEE
T ss_pred CCCCh-------------HHHHHHHHHHh-------------cCCCCeEEEEEcCCCChhhHhhHHHHHHHh--CceEEE
Confidence 6 421 12234555444 344555666655543 356778877 655444
Q ss_pred e-cCCHHHHHHHHHhhcCCCC--CChHHHHHHHhcCCC
Q 011914 306 W-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 340 (475)
Q Consensus 306 ~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~~g 340 (475)
+ .|+.++....++..+...+ ++.+.+..+++...|
T Consensus 139 ~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 139 CQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp ECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 4 5788888888887776655 556666666655433
No 113
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.72 E-value=4.2e-05 Score=77.85 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=54.7
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 218 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~----~~Ge~--------e~~Ir~~f~~A~~~~ 218 (475)
.|+.+...++|+||||+|||+||..++... |-.+++++....... ..|.. ...+.+++..+..++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 366677889999999999999999988763 556677765432211 01100 001233344444455
Q ss_pred HhCCceeEEecccccccc
Q 011914 219 KKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~ 236 (475)
+...|.+|+||++..+..
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 577899999999999974
No 114
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.67 E-value=0.0002 Score=67.45 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=23.3
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVF 180 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA 180 (475)
+++....++|.||+|+|||+|++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56666789999999999999999998
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.67 E-value=0.00017 Score=73.89 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=55.4
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccccCC----CCCh--------HHHHHHHHHHHHHHH
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEP--------AKLIRQRYREAADII 218 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s~~----~Ge~--------e~~Ir~~f~~A~~~~ 218 (475)
.|+.+...++|+||||+|||++|..++... |.++++++...-.... .|.. ...+.+++..+..++
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 366677889999999999999999888763 5677777765322110 0100 001223344444455
Q ss_pred HhCCceeEEeccccccccC
Q 011914 219 KKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~~ 237 (475)
+...+.+|+||.+..+..+
T Consensus 149 ~~~~~~lVVIDsl~~l~~~ 167 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPR 167 (366)
T ss_dssp TTTCCSEEEEECTTTCCCS
T ss_pred hcCCCCEEEEeChHHhccc
Confidence 5678999999999999853
No 116
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.63 E-value=7e-05 Score=75.00 Aligned_cols=83 Identities=8% Similarity=0.145 Sum_probs=55.5
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCccccC--------CCCC--------------
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGE-------------- 202 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s~--------~~Ge-------------- 202 (475)
.|++....++|+||||+|||++|..+|... +-..++++....... ..|.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 356667889999999999999999999874 556777776542100 0010
Q ss_pred -hHHHHHHHHHHHHHHHHh-CCceeEEecccccccc
Q 011914 203 -PAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAG 236 (475)
Q Consensus 203 -~e~~Ir~~f~~A~~~~~~-~~p~ILfIDEiDal~~ 236 (475)
+...+.+++..+..+++. ..+.+|+||.+..+..
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011122344455555556 8899999999998864
No 117
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.62 E-value=8.7e-05 Score=75.80 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=54.4
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccCC----CCChH--------HHHHHHHHHHHHHH
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGN----AGEPA--------KLIRQRYREAADII 218 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~~----~Ge~e--------~~Ir~~f~~A~~~~ 218 (475)
.|+.+...++|+||||+|||++|..++.+ .|..+++++........ .|... ....++...++.++
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 35677788999999999999999998876 36677778764322100 00000 01122333333344
Q ss_pred HhCCceeEEecccccccc
Q 011914 219 KKGKMCCLFINDLDAGAG 236 (475)
Q Consensus 219 ~~~~p~ILfIDEiDal~~ 236 (475)
+...+.+|+||.+..+..
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 567899999999999875
No 118
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.60 E-value=7.1e-05 Score=75.75 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=54.1
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCccccC--------CCCC-h------------
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGE-P------------ 203 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s~--------~~Ge-~------------ 203 (475)
.|++....++|+||||+|||++|..+|... +-..++++....... ..|. .
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 356677889999999999999999999872 456777776542110 0000 0
Q ss_pred --HHHHHHHHHHHHHHHHh--CCceeEEecccccccc
Q 011914 204 --AKLIRQRYREAADIIKK--GKMCCLFINDLDAGAG 236 (475)
Q Consensus 204 --e~~Ir~~f~~A~~~~~~--~~p~ILfIDEiDal~~ 236 (475)
...+..+...+..+++. ..+.+|+||.+..+..
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 01111233344445556 7899999999999874
No 119
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.56 E-value=0.0001 Score=88.29 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=59.1
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcccc----CCCCC--------hHHHHHHHHHHHHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----GNAGE--------PAKLIRQRYREAADIIK 219 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~s----~~~Ge--------~e~~Ir~~f~~A~~~~~ 219 (475)
|+.+...++|+||||+|||+||..+|.+. +.++++++...... ...|- .+..+.+++..++.+.+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 57778899999999999999999998874 45777777654331 11110 01134456666666666
Q ss_pred hCCceeEEecccccccc
Q 011914 220 KGKMCCLFINDLDAGAG 236 (475)
Q Consensus 220 ~~~p~ILfIDEiDal~~ 236 (475)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 78999999999999975
No 120
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.56 E-value=7.1e-05 Score=67.88 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=30.1
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
.+.|..|+|.|+||+|||++++.+++.+|..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4567889999999999999999999999987654
No 121
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.55 E-value=0.00021 Score=66.40 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+++....+.|.||+|+|||+|++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666789999999999999999999854
No 122
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.55 E-value=4.7e-05 Score=68.93 Aligned_cols=33 Identities=12% Similarity=-0.124 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
++.|+|.||||+|||++++.+|+.+|.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 567899999999999999999999999887543
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.53 E-value=0.00054 Score=64.26 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=28.8
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~ 192 (475)
|+.+...++|+||||+|||+++..++.. .+...++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5666678999999999999999887765 3455555554
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.53 E-value=0.00035 Score=70.96 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=54.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhC---------CceEEEecCcccc--------CCCCC---------------
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAGE--------------- 202 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg---------~~~i~vs~s~l~s--------~~~Ge--------------- 202 (475)
+++....++|+||||+|||+|++.++.... -..++++...... ...+-
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 566667899999999999999999998862 2446666543210 00000
Q ss_pred hHHHHHHHHHHHHHHHHh-----CCceeEEecccccccc
Q 011914 203 PAKLIRQRYREAADIIKK-----GKMCCLFINDLDAGAG 236 (475)
Q Consensus 203 ~e~~Ir~~f~~A~~~~~~-----~~p~ILfIDEiDal~~ 236 (475)
......+++..+..+++. ..|.+|+|||+-+++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 011223445555555655 7899999999998863
No 125
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.53 E-value=0.00038 Score=66.93 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=34.9
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcc
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l 195 (475)
....|..++|.||||+|||++++.++..++..++.++...+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 45667899999999999999999999999876677777655
No 126
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.50 E-value=0.00016 Score=71.42 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhhhcC-CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCccc
Q 011914 137 AFMDKVVVHITKNFLNL-PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (475)
Q Consensus 137 ~~~d~~~~~i~k~~l~~-~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l~ 196 (475)
+-..++...++..++.. .....|..++|.||||+|||++|+.++++++..++.++...+.
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 33344455555555542 2345678999999999999999999999986556777764443
No 127
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.48 E-value=0.00018 Score=56.99 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCC
Q 011914 307 APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP 382 (475)
Q Consensus 307 ~P~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~~i~~~~~e~i~~~lv~~~~~~~ 382 (475)
+|+.++|.+||+.++++ .+++.+.+++.+++|+|++|. ++|..+...++++-
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~---~l~~eA~~~a~~~~--------------------- 57 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK---GVCTEAGMYALRER--------------------- 57 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHHTT---------------------
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHhC---------------------
Confidence 59999999999999886 467788999999999999888 77777777766541
Q ss_pred CcCCCcccHHHHHHHHhhhhh
Q 011914 383 TFEQPKMTLDKLLEYGRMLVQ 403 (475)
Q Consensus 383 ~f~~~~~t~e~ll~~~~~lv~ 403 (475)
...++.+++.++......
T Consensus 58 ---~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 58 ---RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp ---CSEECHHHHHHHHHHHHC
T ss_pred ---CCCCCHHHHHHHHHHHHh
Confidence 134677888777665543
No 128
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.47 E-value=0.00026 Score=66.46 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=73.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCc---------cccCC-----------CCC------hHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGE---------LESGN-----------AGE------PAKLIRQRY 211 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~---------l~s~~-----------~Ge------~e~~Ir~~f 211 (475)
.|++|+++|.|||++|-.+|-. .|..+..+..-. +.... .-. .....+..|
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 4889999999999999988777 477777774321 11111 111 134556778
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCCCC
Q 011914 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (475)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~~L 291 (475)
..+++.+......+|+|||+-....-.- .....+...| . ....+.-||+|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~------l~~~ev~~~l----~-------------~Rp~~~~vIlTGr~a--- 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY------LPLEEVISAL----N-------------ARPGHQTVIITGRGC--- 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS------SCHHHHHHHH----H-------------TSCTTCEEEEECSSC---
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC------CCHHHHHHHH----H-------------hCcCCCEEEEECCCC---
Confidence 8887777778899999999976433211 0011233333 2 345677899999985
Q ss_pred ccccccCCCceEEE
Q 011914 292 YAPLIRDGRMEKFY 305 (475)
Q Consensus 292 d~aLlR~GRfd~~i 305 (475)
++.|+. .-|.+-
T Consensus 164 p~~l~e--~AD~VT 175 (196)
T 1g5t_A 164 HRDILD--LADTVS 175 (196)
T ss_dssp CHHHHH--HCSEEE
T ss_pred cHHHHH--hCccee
Confidence 555555 444443
No 129
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.47 E-value=0.00018 Score=72.46 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=51.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCccccC----CCCCh--------HHHHHHH-HHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESG----NAGEP--------AKLIRQR-YREAAD 216 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~l~s~----~~Ge~--------e~~Ir~~-f~~A~~ 216 (475)
|+.+. .++|+||||+|||+||-.++.+. |-.+++++..+-... -.|-. +....++ +..+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 55444 68999999999999988776653 667788887542210 01100 0012222 332222
Q ss_pred H--HHhCCceeEEeccccccccC
Q 011914 217 I--IKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 217 ~--~~~~~p~ILfIDEiDal~~~ 237 (475)
+ ++...|.+|+||-|-++.++
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 2 35778999999999999864
No 130
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.43 E-value=0.00032 Score=67.88 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEecCccccC---CCCChHHHHHHHHHH-HHHHHHhCCceeEEecc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG---NAGEPAKLIRQRYRE-AADIIKKGKMCCLFIND 230 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~s~l~s~---~~Ge~e~~Ir~~f~~-A~~~~~~~~p~ILfIDE 230 (475)
.+..|+|.|+||+|||++|+.+++. .|..++.++...+... |....+..++..... +...+ .. ..+++|.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l--~~-~~vIiD~ 79 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSAL--KN-YWVIVDD 79 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHH--TT-SEEEECS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHh--hC-CEEEEeC
Confidence 3567999999999999999999998 7888876665443322 322334444433222 12122 22 5677775
No 131
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.42 E-value=0.0004 Score=72.02 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---------CCceEEEecCccccC--------CCCCh--------------
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGEP-------------- 203 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---------g~~~i~vs~s~l~s~--------~~Ge~-------------- 203 (475)
|+.+-..++|+||||+|||+|++.+|-.. +-..++++....... ..|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56667789999999999999999877543 233666665432110 01100
Q ss_pred -HHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 011914 204 -AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (475)
Q Consensus 204 -e~~Ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 237 (475)
......+..++...+....|.+|+||++-.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 1112233444555555788999999999887653
No 132
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.00034 Score=65.68 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=29.7
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH----hCCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e----lg~~~i~vs~ 192 (475)
|+.+...++|+|+||+|||++|..+|.+ .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5666778999999999999999876543 3667777664
No 133
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.42 E-value=8.9e-05 Score=68.50 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
.+...|+|.||||+|||++++.+++.+|..++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 44568999999999999999999999999886543
No 134
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.42 E-value=9e-05 Score=66.97 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
..+..|+|+|+||+|||++++.+++.++..++.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4456789999999999999999999999877643
No 135
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.41 E-value=0.00012 Score=69.70 Aligned_cols=40 Identities=33% Similarity=0.606 Sum_probs=33.1
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcc
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l 195 (475)
...+.|++|+|.||||+||+|+|+.|++.+|++ .++.+++
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdl 63 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDL 63 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHH
Confidence 456788999999999999999999999999875 4555443
No 136
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.40 E-value=7.7e-05 Score=68.86 Aligned_cols=31 Identities=13% Similarity=-0.066 Sum_probs=23.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH---hCCceEEE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK---MGINPIMM 190 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~v 190 (475)
..++++||||+|||+++..++.. .|..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56889999999999998666655 35555544
No 137
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.39 E-value=0.00049 Score=72.08 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=30.8
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~ 192 (475)
|+.+...++|.|+||+|||+++..+|... |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 66677789999999999999999888763 556777664
No 138
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.37 E-value=0.00054 Score=65.49 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=45.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCc-------cccCCCCCh-----HHHHHHHHHHHHHHHHhCCce
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE-------LESGNAGEP-----AKLIRQRYREAADIIKKGKMC 224 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~-------l~s~~~Ge~-----e~~Ir~~f~~A~~~~~~~~p~ 224 (475)
..++++||||+|||+++..++..+ |..++.+.+.. +.+. .|.. .....+++..+.+.+....+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 578889999999999998887774 55666664321 2221 1211 011224455444222235688
Q ss_pred eEEecccccc
Q 011914 225 CLFINDLDAG 234 (475)
Q Consensus 225 ILfIDEiDal 234 (475)
+|+|||+.-+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999753
No 139
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.37 E-value=0.00013 Score=67.23 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
...|..|+|.|+||+|||++|+.+++.+|.+++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 35567899999999999999999999999887654
No 140
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.35 E-value=0.00011 Score=66.33 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
|..|+|.|+||+|||++|+.+++.+|.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 6789999999999999999999999986643
No 141
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.34 E-value=0.0008 Score=70.26 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEec
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~ 192 (475)
.|+.+...++|.|+||+|||++|..+|... |.++++++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 467777889999999999999999888762 566777665
No 142
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.32 E-value=0.00013 Score=66.28 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
.+..|+|.|+||+|||++|+.+++.+|.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 457899999999999999999999999876544
No 143
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.31 E-value=0.00016 Score=64.02 Aligned_cols=32 Identities=16% Similarity=-0.071 Sum_probs=27.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
..|+|.||||+|||++++.+++.++.+++..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 35889999999999999999999998876543
No 144
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.30 E-value=0.00012 Score=66.33 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=27.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
..|+|.|+||+|||++|+.+++.+|++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3489999999999999999999999987643
No 145
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.27 E-value=0.00019 Score=64.67 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
.|..|+|.|+||+|||++|+.+++.+|..++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 467899999999999999999999999766543
No 146
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.27 E-value=0.00014 Score=66.32 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH-hCCceEEE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK-MGINPIMM 190 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e-lg~~~i~v 190 (475)
.+..|+|+|+||+|||++++.+++. +|++++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3467999999999999999999999 78776543
No 147
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.27 E-value=0.00016 Score=67.74 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
+.+..|+|.|+||+|||++|+.+|+.++..++.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3567899999999999999999999999866543
No 148
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.26 E-value=0.00016 Score=64.52 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=28.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
..|+|.|+||+|||++++.+|+.+|++++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999999988754
No 149
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.26 E-value=0.00051 Score=68.29 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=52.7
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---------------C----CceEEEecCccccC--------CCCC----
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---------------G----INPIMMSAGELESG--------NAGE---- 202 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---------------g----~~~i~vs~s~l~s~--------~~Ge---- 202 (475)
.|+++...++|+||||+|||++|..+|... | ..+++++....... ..|.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~ 172 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQT 172 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHH
Confidence 356667889999999999999999998762 2 45667765532100 0000
Q ss_pred -----------hHHHHHHHHHHHHHHHHh-CCceeEEecccccccc
Q 011914 203 -----------PAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAG 236 (475)
Q Consensus 203 -----------~e~~Ir~~f~~A~~~~~~-~~p~ILfIDEiDal~~ 236 (475)
+...+.+++..+...++. ..+.+|+||.+..+..
T Consensus 173 ~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 173 VLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred HhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 001111233334444555 7899999999998864
No 150
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.22 E-value=0.00022 Score=63.68 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
+..++|.||||+|||++++.++..++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356899999999999999999999987654
No 151
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.22 E-value=0.0002 Score=65.87 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
..|..|+|.|+||+|||++++.+++.+|..++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4567899999999999999999999998766543
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.21 E-value=0.00018 Score=65.44 Aligned_cols=32 Identities=38% Similarity=0.556 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
.|..|+|.|+||+|||++|+.+++.+|..++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 35679999999999999999999999976554
No 153
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.21 E-value=0.00017 Score=64.94 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=26.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
.++|.||||+|||++++.+|+.++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48899999999999999999999987764
No 154
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.20 E-value=0.00018 Score=63.32 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=26.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
..|+|.||||+|||++|+.+ +.+|.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 36889999999999999999 8899887653
No 155
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.19 E-value=0.00017 Score=64.50 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHH-HhCCce
Q 011914 159 PLILGIWGGKGQGKSFQCELVFA-KMGINP 187 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~-elg~~~ 187 (475)
|..|+|.|+||+|||++|+.+++ ..+..+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 57899999999999999999999 455433
No 156
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.00022 Score=65.64 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
.|..|+|.|+||+|||++|+.+++.+|..++.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 36689999999999999999999999877654
No 157
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.18 E-value=0.00023 Score=64.27 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
+..|+|.|+||+|||++++.+++.+|..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457899999999999999999999987654
No 158
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.18 E-value=0.00019 Score=67.53 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
..|..|+|.|+||+|||++|+.+++.+|..++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 446789999999999999999999999876654
No 159
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.18 E-value=0.00018 Score=64.73 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
.|..|+|.|+||+|||++|+.+++.++.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3568999999999999999999999998876
No 160
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.15 E-value=0.00024 Score=64.49 Aligned_cols=38 Identities=24% Similarity=0.175 Sum_probs=31.2
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s 193 (475)
++.+..++|.||||+||||+++.++...+...+.++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 45667899999999999999999999876666666644
No 161
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.15 E-value=0.00026 Score=67.89 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
+.|..|+|.||||+|||++|+.+++.+|+.++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4678899999999999999999999998766543
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.13 E-value=0.0011 Score=64.91 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=29.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEe
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMS 191 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs 191 (475)
++.+...++|.||||+|||+|++.+|..+ |..++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56666789999999999999999998874 54555544
No 163
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.13 E-value=0.00021 Score=64.50 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
+..|+|.||||+|||++++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999987
No 164
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.13 E-value=0.00023 Score=63.40 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=26.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
..|+|.|+||+|||++++.+++.+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 458999999999999999999999987664
No 165
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.11 E-value=0.00023 Score=66.63 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
+..|+|.|+||+|||++|+.+|+.+|..++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35688999999999999999999999876644
No 166
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.09 E-value=0.0028 Score=67.79 Aligned_cols=25 Identities=28% Similarity=0.229 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~ 181 (475)
..++.++|+||+|+|||+||..+++
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3467899999999999999999875
No 167
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.09 E-value=0.0024 Score=61.93 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
|+.....++|+||||+|||+|+..++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5555678999999999999999999865
No 168
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.08 E-value=0.00032 Score=66.43 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
..+..|+|.|+||+|||++|+.+|+.+++.++.+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3456799999999999999999999999776543
No 169
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.08 E-value=0.00034 Score=56.91 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 307 APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 307 ~P~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
.|+.++|.+||+.++++ .+++++.|++.+++|+|++|. ++|..+...++++
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~---~l~~eAa~~alr~ 64 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK---GVCTEAGMYALRE 64 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHH---HHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHH
Confidence 69999999999999886 467888999999999999998 8887777776664
No 170
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.07 E-value=0.0059 Score=65.23 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~ 181 (475)
..+..+.|+|++|+|||+||+.+++
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3468899999999999999999997
No 171
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.06 E-value=0.0004 Score=67.07 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
..++|.||||+|||++|+.+|+.++..++.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 358899999999999999999999988776654
No 172
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.06 E-value=0.0044 Score=65.06 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=64.1
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEec-----CCCCCCcccccc
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG-----NDFSTLYAPLIR 297 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TT-----N~~~~Ld~aLlR 297 (475)
..||++||||++..+.++ ...++....|.+.|+.+++. +.+.. .|.....++|++|+|+ |..+ +-|+|+.
T Consensus 251 ~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~-~~~~~--~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~~ 325 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEG-STVST--KHGMVKTDHILFIASGAFQVARPSD-LIPELQG 325 (444)
T ss_dssp HCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHC-CEEEE--TTEEEECTTCEEEEEECCSSCCGGG-SCHHHHT
T ss_pred CCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhcc-ccccc--ccceecCCcEEEEeccccccCChhh-cchHHhc
Confidence 458999999999876432 34455566788899998883 33322 1223457889999998 5444 4578888
Q ss_pred CCCceEEEec--CCHHHHHHHHH
Q 011914 298 DGRMEKFYWA--PTREDRIGVCS 318 (475)
Q Consensus 298 ~GRfd~~i~~--P~~eeR~~Il~ 318 (475)
||+..+.+ .+.++..+|+.
T Consensus 326 --R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 326 --RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp --TCCEEEECCCCCHHHHHHHHH
T ss_pred --ccceeeeCCCCCHHHHHHHHH
Confidence 99998885 68999999983
No 173
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.01 E-value=0.00041 Score=61.51 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=26.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
.|+|.|+||+|||++++.+++.+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999887643
No 174
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.00 E-value=0.00059 Score=61.11 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
.+..++|.||||+|||++++.++..+|..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 3467999999999999999999999986554
No 175
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.00 E-value=0.00036 Score=65.32 Aligned_cols=31 Identities=39% Similarity=0.542 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
.|..|+|.||||+|||++++.+|+.++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4567999999999999999999999997554
No 176
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.00 E-value=0.00036 Score=64.84 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=26.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
.|+|.||||+|||++|+.+++++|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378899999999999999999998876644
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.00 E-value=0.00054 Score=63.17 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l 195 (475)
+.+..++|.||+|+|||++++.++..+|..+ ++...+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 3467899999999999999999999998654 444433
No 178
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.99 E-value=0.00038 Score=64.54 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
.|+|.||||+|||++|+.+++++|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999877644
No 179
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.96 E-value=0.0045 Score=71.12 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..++.+.|+|++|+|||+||+.+++.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998876
No 180
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.95 E-value=0.0022 Score=63.89 Aligned_cols=39 Identities=15% Similarity=-0.121 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
.|+.+...++|.|+||+|||++|..+|... |.++++++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 367777889999999999999999998763 456666664
No 181
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.94 E-value=0.00058 Score=64.30 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=27.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcc
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l 195 (475)
.|+|.||||+||+|+|+.||+.+|++. ++.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence 478889999999999999999998754 554443
No 182
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.94 E-value=0.00085 Score=60.46 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s 193 (475)
..+..+.|.|++|+|||++++.++..+ |.+++.++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 345678999999999999999999997 9888877753
No 183
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.88 E-value=0.00067 Score=62.01 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh-CCceEEEe
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMS 191 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el-g~~~i~vs 191 (475)
.+..|.|.|+||+|||++++.+++.+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 45779999999999999999999998 57777654
No 184
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.87 E-value=0.00091 Score=60.34 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=27.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCceEEEe
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs 191 (475)
.|+|.|+||+|||++++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88887765
No 185
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.87 E-value=0.0023 Score=58.84 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 194 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~ 194 (475)
..+..+.|.||+|+|||+++++++..+ |...+.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 456789999999999999999999998 65544555433
No 186
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.86 E-value=0.00084 Score=62.49 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
+..+.|.||+|+||||+++.+++.+|++++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999997664
No 187
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.85 E-value=0.0067 Score=60.46 Aligned_cols=72 Identities=17% Similarity=0.324 Sum_probs=45.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccc--------------------cCCCCChHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE--------------------SGNAGEPAKLIRQRYRE 213 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~--------------------s~~~Ge~e~~Ir~~f~~ 213 (475)
..|..++|.||+|+|||+++..+|..+ |-.+..++..... ....+++...+...+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 567889999999999999999998874 4455544432110 01122333333333333
Q ss_pred HHHHHHhCCceeEEecccc
Q 011914 214 AADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 214 A~~~~~~~~p~ILfIDEiD 232 (475)
+. ...|.+|+||+.-
T Consensus 182 a~----~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 AL----ARNKDVVIIDTAG 196 (306)
T ss_dssp HH----HTTCSEEEEEECC
T ss_pred HH----hcCCCEEEEECCC
Confidence 32 6788999999774
No 188
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.83 E-value=0.0036 Score=56.61 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC---CceEEEecC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAG 193 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~s 193 (475)
..+..++|.|+||+|||++++.++..++ ..+..++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 4567899999999999999999999864 445555543
No 189
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.83 E-value=0.00062 Score=63.37 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
.|+|.||||+|||++|+.+++.+|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999877654
No 190
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.83 E-value=0.0017 Score=58.86 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=27.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
.|.|.|++|+||||+++.+++.+ |.+++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 47899999999999999999998 998876543
No 191
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.82 E-value=0.0007 Score=61.73 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
..|..|.|.|++|+|||++++.+++. |++++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 35678999999999999999999998 8776543
No 192
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.80 E-value=0.0076 Score=63.21 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=49.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCccc-------------------c-CCCCChHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-------------------S-GNAGEPAKLIRQRYREA 214 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l~-------------------s-~~~Ge~e~~Ir~~f~~A 214 (475)
+|..+++.|++|+|||+++..+|..+ |..+..+++.... . .....+...++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998764 6666666653221 1 11223455555555555
Q ss_pred HHHHHhCCceeEEecccc
Q 011914 215 ADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 215 ~~~~~~~~p~ILfIDEiD 232 (475)
. ...+.+|+||...
T Consensus 179 ~----~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 K----SKGVDIIIVDTAG 192 (443)
T ss_dssp H----HTTCSEEEEECCC
T ss_pred H----hCCCCEEEEECCC
Confidence 4 6678899999774
No 193
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.78 E-value=0.001 Score=63.30 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
.|..++|.||||+||||+++.|++.+|...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4678999999999999999999999987654
No 194
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.78 E-value=0.0059 Score=64.55 Aligned_cols=38 Identities=11% Similarity=-0.035 Sum_probs=31.1
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~ 192 (475)
|+.+...++|.|+||+|||++|..+|... |.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 56666789999999999999999998874 557777765
No 195
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.76 E-value=0.011 Score=63.89 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=48.8
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC--CCccccccCCCc
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRM 301 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~--~Ld~aLlR~GRf 301 (475)
.+|+|||+..++.... ..+...|..|.. .....++-+|++|.+|. .|+..++. -|
T Consensus 345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar------------~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~ 401 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ------------KARAAGIHLILATQRPSVDVITGLIKA--NI 401 (574)
T ss_dssp EEEEESCCTTHHHHTC---------HHHHHHHHHHHH------------HCTTTTEEEEEEESCCCTTTSCHHHHH--TC
T ss_pred EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH------------HHhhCCeEEEEEecCcccccccHHHHh--hh
Confidence 5899999998865321 123333444333 13467899999999998 78887776 56
Q ss_pred eEEEe--cCCHHHHHHHHH
Q 011914 302 EKFYW--APTREDRIGVCS 318 (475)
Q Consensus 302 d~~i~--~P~~eeR~~Il~ 318 (475)
...+. +.+..+...|+.
T Consensus 402 ~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 402 PTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp CEEEEECCSCHHHHHHHHS
T ss_pred ccEEEEEcCCHHHHHHhcC
Confidence 66555 577877777774
No 196
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.76 E-value=0.0041 Score=65.11 Aligned_cols=38 Identities=16% Similarity=-0.097 Sum_probs=31.1
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
|+.+...++|.|+||+|||++|..+|... |.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 66667789999999999999999888764 667777665
No 197
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.00065 Score=61.15 Aligned_cols=32 Identities=28% Similarity=0.163 Sum_probs=25.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhC---CceEEEe
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMS 191 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs 191 (475)
+.|+|.|+||+|||++++.+++.++ ..+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 3588999999999999999999876 3344454
No 198
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.74 E-value=0.00053 Score=63.06 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCce
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINP 187 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~ 187 (475)
+.+..|+|.|+||+|||++++.+++.++...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3567899999999999999999999876543
No 199
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.73 E-value=0.001 Score=61.31 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
..+.|.||+|+|||++++.++. +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 5689999999999999999998 8887764
No 200
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.72 E-value=0.0011 Score=60.76 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~ 186 (475)
+..|+|.|+||+|||++++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5679999999999999999999998764
No 201
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.72 E-value=0.001 Score=60.43 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
.|.|.|+||+||||+++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999998655
No 202
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.72 E-value=0.0011 Score=63.69 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
..|..+.|.||||+|||++++.|++.+|+.++.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 346789999999999999999999999976643
No 203
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.71 E-value=0.00061 Score=62.69 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~ 185 (475)
+.|..|+|.|+||+|||++++.+++.++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999998653
No 204
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.71 E-value=0.00084 Score=61.64 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
.|.|.|++|+|||++++.+++ +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887766543
No 205
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.69 E-value=0.00079 Score=68.73 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=27.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
..++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 468899999999999999999999888754
No 206
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.67 E-value=0.0014 Score=59.90 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=27.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
.|.|.|++|+|||++++.+++.+|++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 789999999999999999999999887653
No 207
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.67 E-value=0.0016 Score=62.39 Aligned_cols=40 Identities=28% Similarity=0.595 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCce--------EEEecCccc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINP--------IMMSAGELE 196 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~--------i~vs~s~l~ 196 (475)
..|..|.|.|++|+|||++|+.+++.+|.++ ..++...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4578899999999999999999999999763 356666654
No 208
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.67 E-value=0.0013 Score=66.40 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s 193 (475)
.++.++|.||+|+|||++++.+|++++..++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 356899999999999999999999999888777543
No 209
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.65 E-value=0.0013 Score=61.91 Aligned_cols=29 Identities=34% Similarity=0.415 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
.|+|.||||+|||++|+.+++.+|..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 47899999999999999999999876543
No 210
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.64 E-value=0.0015 Score=60.75 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
+.+..+.|.||+|+|||++++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3457799999999999999999999875
No 211
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.61 E-value=0.0032 Score=58.42 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC----CceEEEecCcc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 195 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg----~~~i~vs~s~l 195 (475)
..+..++|.|+||+|||++++.++..++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4567899999999999999999999764 55777765433
No 212
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.61 E-value=0.001 Score=61.45 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=28.7
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh-CCceEE
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIM 189 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el-g~~~i~ 189 (475)
.++.+..++|.||+|+|||++++.+++.+ ++.++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 45667889999999999999999999987 554443
No 213
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.61 E-value=0.0046 Score=58.91 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=28.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s 193 (475)
.++++||+|+|||.++.+++...+...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 388999999999999999999887777776654
No 214
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.59 E-value=0.0024 Score=51.84 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=40.6
Q ss_pred CHHHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 309 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 309 ~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
+.++|.+||+.++++ .+++.+.|++.+++|+|++|. ++|..+...++++
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~---~l~~eAa~~a~r~ 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELR---SVCTEAGMFAIRA 54 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHH---HHHHHHHHHHHHh
Confidence 567899999988876 457788999999999999988 8888887777765
No 215
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.58 E-value=0.0017 Score=60.29 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
.|..|.|.|++|+|||++++.++. +|.+++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 467899999999999999999998 88766543
No 216
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.56 E-value=0.0022 Score=65.05 Aligned_cols=38 Identities=11% Similarity=-0.062 Sum_probs=30.9
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~ 192 (475)
|+.+...++|.|+||+|||+++..+|.. .|.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 6666778999999999999999998877 3666666664
No 217
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.55 E-value=0.0041 Score=57.36 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 138 FMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 138 ~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
.++.++.++.+. ....+..+.|.||+|+|||++++.++..+ +..++..+.
T Consensus 6 ~~~~l~~~~~~~-----~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 6 RIDFLCKTILAI-----KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp HHHHHHHHHHTS-----CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred HHHHHHHHHHHh-----ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 445555444432 24567889999999999999999999875 555555543
No 218
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.53 E-value=0.009 Score=57.23 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
...+++.|+||+|||+++-.+|..+ |..++.++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4679999999999999998888774 666655544
No 219
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.50 E-value=0.0015 Score=67.65 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEecCcc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~l 195 (475)
..|..|+|.|+||+|||++|+.+++.++..+ ++...+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 4568899999999999999999999987654 454444
No 220
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.49 E-value=0.0025 Score=64.95 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=41.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh----CCceEEEecC-cccc---------CCCCChHHHHHHHHHHHHHHHHhCCcee
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG-ELES---------GNAGEPAKLIRQRYREAADIIKKGKMCC 225 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~s-~l~s---------~~~Ge~e~~Ir~~f~~A~~~~~~~~p~I 225 (475)
..++|.||+|+|||++.++++..+ +-.++.+... ++.. ...+.....+...+..|. ...|.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL----~~~Pdv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL----REDPDI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT----TSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh----hhCcCE
Confidence 468999999999999999998874 2333333221 1110 001111112223344443 789999
Q ss_pred EEecccc
Q 011914 226 LFINDLD 232 (475)
Q Consensus 226 LfIDEiD 232 (475)
|++||+-
T Consensus 200 illDEp~ 206 (356)
T 3jvv_A 200 ILVGEMR 206 (356)
T ss_dssp EEESCCC
T ss_pred EecCCCC
Confidence 9999984
No 221
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.47 E-value=0.0017 Score=60.39 Aligned_cols=32 Identities=31% Similarity=0.614 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
-..|.|.|++|||||++++.+++.+|++++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 35689999999999999999999989877653
No 222
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.47 E-value=0.0021 Score=57.98 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCEL 178 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAka 178 (475)
..+..++|.||+|+|||+++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3456799999999999999994
No 223
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.46 E-value=0.0017 Score=63.70 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
..|..|+|.|++|+|||++|+.++ ++|++++..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 457889999999999999999999 688766543
No 224
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.46 E-value=0.0019 Score=59.97 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
|..+.|.|++|+|||++++.+++.+|++++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 45799999999999999999999999876543
No 225
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.45 E-value=0.0031 Score=67.39 Aligned_cols=36 Identities=11% Similarity=0.283 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC---CceEEEec
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSA 192 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~ 192 (475)
..|..|+|.|.||+|||++|+.+++.++ .....++.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~ 71 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 4567899999999999999999999984 44444444
No 226
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.44 E-value=0.0025 Score=60.33 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=28.9
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
...+..+.|.|++|+|||++++.+++.+|++++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3456789999999999999999999999987653
No 227
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.39 E-value=0.0026 Score=61.18 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
....+.|.||+|+|||++++.+++.+|+.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3457899999999999999999999998665
No 228
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.38 E-value=0.0035 Score=60.97 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
++...++|.||.|+|||++.++++...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 444679999999999999999999874
No 229
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.32 E-value=0.0021 Score=62.64 Aligned_cols=30 Identities=33% Similarity=0.303 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh-CCceE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM-GINPI 188 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el-g~~~i 188 (475)
|..|+|.|+||+|||++|+.+++.+ +..++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 5679999999999999999999974 65444
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.30 E-value=0.0074 Score=61.13 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
+.++.|+|.||+|+|||+|+..||+.++..++..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 345689999999999999999999999877766544
No 231
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0026 Score=61.60 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
...|.|.|++|+|||++++.+|..+|.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 34689999999999999999999999987654
No 232
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.29 E-value=0.0035 Score=58.71 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.++.+.|.||+|+|||+|+++++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346788999999999999999998864
No 233
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.27 E-value=0.016 Score=60.67 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
+|..++|.||+|+|||+++..+|..+ |..+..+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 57889999999999999999998764 666666654
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.25 E-value=0.0026 Score=58.69 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
...+..++|.||||+|||++++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34567799999999999999999999875
No 235
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.24 E-value=0.0028 Score=57.86 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
..+..+.|.||+|+|||++++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999999876
No 236
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.21 E-value=0.016 Score=60.54 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=55.5
Q ss_pred ceeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEe---------cC---CCCC
Q 011914 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT---------GN---DFST 290 (475)
Q Consensus 223 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~T---------TN---~~~~ 290 (475)
|.|+||||+|.+.. .....|+..+. ++..+++|++| |+ .+..
T Consensus 296 ~~VliIDEa~~l~~-------------~a~~aLlk~lE-------------e~~~~~~il~tn~~~~~i~~~~~~~~~~~ 349 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI-------------ECFTYLHRALE-------------SSIAPIVIFASNRGNCVIRGTEDITSPHG 349 (456)
T ss_dssp ECEEEEESGGGCBH-------------HHHHHHHHHTT-------------STTCCEEEEEECCSEEECBTTSSCEEETT
T ss_pred ceEEEEechhhcCH-------------HHHHHHHHHhh-------------ccCCCEEEEecCCcccccccccccccccc
Confidence 46999999998732 23455666444 33444544445 32 2678
Q ss_pred CccccccCCCceEEEe-cCCHHHHHHHHHhhcCC--CCCChHHHHHHH
Q 011914 291 LYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT--DNVPKEDIVKLV 335 (475)
Q Consensus 291 Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~ 335 (475)
|++.+++ ||..+.+ .|+.++..+|++..... ..++.+.+..++
T Consensus 350 l~~~i~s--R~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~ 395 (456)
T 2c9o_A 350 IPLDLLD--RVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLG 395 (456)
T ss_dssp CCHHHHT--TEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred CChhHHh--hcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 8899999 9988644 57999999999877653 334555444333
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.14 E-value=0.0058 Score=56.58 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.+.+..+.|.||+|+|||||+++|+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35567899999999999999999999874
No 238
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.13 E-value=0.0031 Score=58.12 Aligned_cols=28 Identities=29% Similarity=0.609 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
+.+..+.|.||+|+||||+++.++..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999999987
No 239
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.12 E-value=0.0046 Score=61.99 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
..|+.++|.||+|+|||+||..+|+.++..++..+.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 456789999999999999999999999877666544
No 240
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.06 E-value=0.0048 Score=63.10 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
++...++|.||+|+|||++.++++...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445679999999999999999999874
No 241
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.01 E-value=0.034 Score=59.16 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
..|..|+|.|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 457789999999999999999999765 666766665
No 242
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.98 E-value=0.0092 Score=59.95 Aligned_cols=39 Identities=38% Similarity=0.537 Sum_probs=31.7
Q ss_pred HHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 146 i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
+...++.....+.|..+.|.||+|+||||+++.++..++
T Consensus 79 ~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 79 ATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334455555567889999999999999999999999875
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.97 E-value=0.0048 Score=55.87 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
...+.|.||+|+|||+|++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999999764
No 244
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.95 E-value=0.0056 Score=56.99 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=27.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
..|.|.||+|||||++++.+|+.+|++|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 479999999999999999999999999874
No 245
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.91 E-value=0.014 Score=63.86 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecCcc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 195 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s~l 195 (475)
.+..|+|.|+||+|||++|+++++.+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 56789999999999999999999998 999988865433
No 246
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.90 E-value=0.0052 Score=58.96 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=25.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCceE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINPI 188 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~i 188 (475)
.-+.|.||||+|||++|+.|++.+|++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 34789999999999999999999998765
No 247
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.90 E-value=0.011 Score=54.79 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEe
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs 191 (475)
-+..+++||+|+|||+.+-.+++.. |..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688999999999999888877774 66666553
No 248
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.88 E-value=0.0077 Score=59.67 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=30.0
Q ss_pred HHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 147 ~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.+.++.......+..+.|.||+|+||||+++.|+..++
T Consensus 68 ~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 68 LEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455444456678899999999999999999999876
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.87 E-value=0.0055 Score=55.83 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
....+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999999863
No 250
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.87 E-value=0.0062 Score=55.10 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
..++|.||+|+|||++++.++...+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 4588999999999999999998654
No 251
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.86 E-value=0.0052 Score=62.27 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
+..|+|.||+|+|||++|+.||..++..++.++
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 357999999999999999999999986555544
No 252
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.78 E-value=0.058 Score=57.53 Aligned_cols=72 Identities=6% Similarity=0.118 Sum_probs=45.7
Q ss_pred eeEEeccccccccCCCCCcccchhhHHHHHHHHhhhcCCCcccCCCccccCCCCCceEEEecCCCC--CCccccccCCCc
Q 011914 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRM 301 (475)
Q Consensus 224 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l~d~~~~v~ldg~~~~~~~~~V~VI~TTN~~~--~Ld~aLlR~GRf 301 (475)
.+|+|||+..++... ...+...+..|.. .....++.+|++|.++. .|+..++. .|
T Consensus 299 ivlvIDE~~~ll~~~---------~~~~~~~l~~Lar------------~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~ 355 (512)
T 2ius_A 299 IVVLVDEFADLMMTV---------GKKVEELIARLAQ------------KARAAGIHLVLATQRPSVDVITGLIKA--NI 355 (512)
T ss_dssp EEEEEETHHHHHHHH---------HHHHHHHHHHHHH------------HCGGGTEEEEEEESCCCTTTSCHHHHH--HC
T ss_pred EEEEEeCHHHHHhhh---------hHHHHHHHHHHHH------------HhhhCCcEEEEEecCCccccccHHHHh--hc
Confidence 389999998775420 1123333433332 02235788999999987 57777766 56
Q ss_pred eEEEe--cCCHHHHHHHHH
Q 011914 302 EKFYW--APTREDRIGVCS 318 (475)
Q Consensus 302 d~~i~--~P~~eeR~~Il~ 318 (475)
...+. +.+..+...|+.
T Consensus 356 ~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 356 PTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp CEEEEECCSSHHHHHHHHS
T ss_pred CCeEEEEcCCHHHHHHhcC
Confidence 55444 678888888775
No 253
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.73 E-value=0.0095 Score=64.39 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEec
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~ 192 (475)
...++|.||||||||+++.+++.. .|..++.+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 357899999999999999999875 4666655544
No 254
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.69 E-value=0.025 Score=61.14 Aligned_cols=38 Identities=8% Similarity=0.041 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC----CceEEEecCc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGE 194 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg----~~~i~vs~s~ 194 (475)
..+..|+|.|+||+|||++|+++++.++ .+++.++...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 4567899999999999999999999976 6777776544
No 255
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.66 E-value=0.064 Score=55.96 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEecC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 193 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~s 193 (475)
++|+.+++.|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 457899999999999999999888764 7777777765
No 256
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.65 E-value=0.017 Score=62.11 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=39.5
Q ss_pred CCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhC---CceEEEecCc
Q 011914 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGE 194 (475)
Q Consensus 133 ~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~s~ 194 (475)
.+|+.|+-..+..+++...... .+.+..|+|.|++|+|||++|+.+++.++ .++..++...
T Consensus 347 ~~p~~~~r~eV~~~lr~~~~~~-~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 347 KLPEWFTRPEVAEILAETYVPK-HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CCCTTTSCHHHHHHHHHHSCCG-GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred CCCccccchhHHHHHHHhhccc-cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 3445454333445555543211 24467899999999999999999999864 4566666543
No 257
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.64 E-value=0.0059 Score=55.52 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
|..+.|.||+|+|||++++.++....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998854
No 258
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.64 E-value=0.014 Score=57.54 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.1
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.+.|..+.|.||+|+|||++++.|+..++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45788999999999999999999999875
No 259
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.64 E-value=0.04 Score=51.49 Aligned_cols=36 Identities=19% Similarity=-0.030 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCccHH-HHHHHHHHH--hCCceEEEecC
Q 011914 158 VPLILGIWGGKGQGKS-FQCELVFAK--MGINPIMMSAG 193 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT-~LAkaIA~e--lg~~~i~vs~s 193 (475)
.....++|||.|+||| .|.+++.+. .+..++.+.+.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 3467899999999999 888988776 46677777643
No 260
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.63 E-value=0.053 Score=57.62 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=21.6
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHH
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELV 179 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaI 179 (475)
++.....++|.||+|+|||+|++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 4556678999999999999999994
No 261
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.59 E-value=0.0068 Score=60.92 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
++.++|.||+|+|||+|+..+|+.++..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 457889999999999999999999876655443
No 262
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.55 E-value=0.009 Score=56.80 Aligned_cols=31 Identities=35% Similarity=0.714 Sum_probs=26.6
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~ 186 (475)
+..+..+.|.||.|+||||+++.++..+|..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4556789999999999999999999988754
No 263
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.52 E-value=0.027 Score=58.22 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=47.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCc---------------cccCCCCCh-HHHHH---HHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE---------------LESGNAGEP-AKLIR---QRYREA 214 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~---------------l~s~~~Ge~-e~~Ir---~~f~~A 214 (475)
.--++|.||+|+|||+|+..|++.. ++.++++-.++ +......++ ...++ .....|
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~A 253 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA 253 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3468999999999999999998864 44444443221 111122222 22222 223334
Q ss_pred HHHHHhCCceeEEeccccccc
Q 011914 215 ADIIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 215 ~~~~~~~~p~ILfIDEiDal~ 235 (475)
......++..+|++|++-..+
T Consensus 254 Eyfrd~G~dVLil~DslTR~A 274 (422)
T 3ice_A 254 KRLVEHKKDVIILLDSITRLA 274 (422)
T ss_dssp HHHHHTSCEEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEEeCchHHH
Confidence 444447889999999998765
No 264
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.51 E-value=0.011 Score=56.20 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
...|.|.|++|||||++++.+|+.+|++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4689999999999999999999999998864
No 265
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.46 E-value=0.011 Score=56.12 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC--CceEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM 189 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg--~~~i~ 189 (475)
..+..|.|.||||+|||++++.+++.++ ..++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 4567789999999999999999999986 34443
No 266
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.43 E-value=0.019 Score=57.58 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=43.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCC--ceEEEecCc-cccC-------C---CCChHHHHHHHHHHHHHHHHhCCceeE
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LESG-------N---AGEPAKLIRQRYREAADIIKKGKMCCL 226 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~--~~i~vs~s~-l~s~-------~---~Ge~e~~Ir~~f~~A~~~~~~~~p~IL 226 (475)
..++|.||+|+|||+++++++..... ..+.+.... +.-. + .|+ ..+..+..|. ...|.+|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~---~~r~~la~aL----~~~p~il 244 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNI---TSADCLKSCL----RMRPDRI 244 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTB---CHHHHHHHHT----TSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCCh---hHHHHHHHHh----hhCCCEE
Confidence 46999999999999999999988532 234443321 1100 1 122 2233444444 6789999
Q ss_pred Eeccccc
Q 011914 227 FINDLDA 233 (475)
Q Consensus 227 fIDEiDa 233 (475)
++||.-.
T Consensus 245 ildE~~~ 251 (330)
T 2pt7_A 245 ILGELRS 251 (330)
T ss_dssp EECCCCS
T ss_pred EEcCCCh
Confidence 9999864
No 267
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.41 E-value=0.012 Score=62.84 Aligned_cols=54 Identities=13% Similarity=-0.045 Sum_probs=39.6
Q ss_pred CCCCChhhHHHHHHHHHHhhhcCCCCCCCeEEEEEcCCCccHHHHHHHHHHHhCC
Q 011914 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (475)
Q Consensus 131 ~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAkaIA~elg~ 185 (475)
+..+|+.|+-.-+..+++.+.... .+.+..|.|.|++|||||++++++|+.++.
T Consensus 368 G~~~P~~f~rpeV~~vLr~~~~~~-~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 368 GGEIPEWFSYPEVVKILRESNPPR-PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCG-GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCCccccChhhHHHHHHhcccc-cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 345566776666666666654221 244578999999999999999999999985
No 268
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.39 E-value=0.012 Score=60.90 Aligned_cols=33 Identities=24% Similarity=0.150 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
++.|+|.||+|+|||+|+..+|+.++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 567899999999999999999999987665543
No 269
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.36 E-value=0.094 Score=52.63 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.+|..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999999874
No 270
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.31 E-value=0.0056 Score=56.18 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.|.|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999975
No 271
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.29 E-value=0.058 Score=57.29 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=29.0
Q ss_pred CCCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
++.+...++|.||+|+|||+|++.++... |-..+.+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45566789999999999999999998763 444445543
No 272
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.28 E-value=0.0046 Score=49.28 Aligned_cols=48 Identities=25% Similarity=0.245 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHH
Q 011914 309 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359 (475)
Q Consensus 309 ~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~ 359 (475)
+.++|.+||+.++++ .+++.+.+++.+++|+|++|. ++|..+...+++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~---~l~~eA~~~a~~ 53 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADIN---SICQESGMLAVR 53 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHH---HHHHHHHHGGGT
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHH
Confidence 678999999999876 356777888888888888887 666665555443
No 273
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.24 E-value=0.054 Score=53.39 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
.+..+.+.|++|+|||+++..+|..+ +-.+..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 56788899999999999999998774 445544443
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.24 E-value=0.11 Score=51.22 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s 193 (475)
+..+++.|++|+|||+++..+|..+ |..+..++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 7789999999999999999998775 5566666543
No 275
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.18 E-value=0.081 Score=60.23 Aligned_cols=24 Identities=25% Similarity=0.077 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~ 181 (475)
....++|.||.|+|||++.+.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 346799999999999999999874
No 276
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.15 E-value=0.0079 Score=59.28 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhC---CceEEEecCccc
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE 196 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg---~~~i~vs~s~l~ 196 (475)
.+..|.|.||+|+|||++|+.+++.++ ..+..++...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456799999999999999999999866 445556655443
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.15 E-value=0.011 Score=54.62 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
++..+.|.||+|+|||+|++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345689999999999999999998764
No 278
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.09 E-value=0.027 Score=59.04 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~ 185 (475)
..|..|+|.|.||+|||++++.+++.++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45678999999999999999999998753
No 279
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.07 E-value=0.016 Score=54.69 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
|+.|.|.|++|+|||++++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67799999999999999999999983
No 280
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.05 E-value=0.014 Score=53.92 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
+.....+.|.||+|+|||+|+++|+..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45556799999999999999999999874
No 281
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.03 E-value=0.097 Score=52.29 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=29.0
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
.+.|..++|.||+|+|||+++..+|..+ |-.++.+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3567889999999999999999988774 555555543
No 282
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.03 E-value=0.021 Score=52.84 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=22.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCce
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINP 187 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~ 187 (475)
|+|.||+|+|||+|++.+.++..-.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 78999999999999999998865433
No 283
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.01 E-value=0.034 Score=52.74 Aligned_cols=34 Identities=21% Similarity=0.083 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEec
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~ 192 (475)
-...+++||.|+|||+.+-.++.. .|..++.+..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 356779999999999988777665 4667776653
No 284
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.94 E-value=0.037 Score=54.91 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
++.+..++|.||.|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999874
No 285
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.92 E-value=0.019 Score=60.62 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el 183 (475)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 358899999999999999887764
No 286
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.92 E-value=0.014 Score=54.77 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+++...+.|.||+|+|||+|++.|+...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445679999999999999999999976
No 287
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.82 E-value=0.095 Score=52.78 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEe
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs 191 (475)
..+..|+|.|+||+|||+++..++..+ |..+..++
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 456789999999999999999998875 55444443
No 288
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.77 E-value=0.021 Score=56.92 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.8
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
++.+..+.|.||+|+|||||++.|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 56678899999999999999999999863
No 289
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.75 E-value=0.052 Score=49.29 Aligned_cols=24 Identities=17% Similarity=0.031 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el 183 (475)
..+++++|+|+|||+++-.++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999988777653
No 290
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.70 E-value=0.0081 Score=57.67 Aligned_cols=28 Identities=18% Similarity=0.030 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.+.+..|.|.|++|+|||++++.+++.+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3566889999999999999999999998
No 291
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.69 E-value=0.014 Score=55.02 Aligned_cols=30 Identities=27% Similarity=0.130 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEE
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~ 189 (475)
.++++|.||+|+|||++|..+++..+ .++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 47899999999999999999998865 4443
No 292
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.69 E-value=0.025 Score=50.76 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+++...+.|.||.|+|||+|+++|+..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3455679999999999999999999987
No 293
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.56 E-value=0.051 Score=55.34 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
++.+..++|.||.|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4567889999999999999999999874
No 294
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.52 E-value=0.011 Score=55.39 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=17.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHH-HHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVF-AKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA-~el 183 (475)
+....+.|.||+|+|||++++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445679999999999999999999 765
No 295
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.52 E-value=0.16 Score=57.05 Aligned_cols=24 Identities=25% Similarity=0.018 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...++|.||.|+|||++.+.|+.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 357999999999999999999865
No 296
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.51 E-value=0.07 Score=50.40 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhCCceEEE
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~v 190 (475)
.++.|.|.|++|+|||++++.+++.++.....+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 356789999999999999999999998744333
No 297
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.50 E-value=0.044 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.+.-|+|.|.||+|||+|..++...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4467999999999999999999765
No 298
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.49 E-value=0.022 Score=52.52 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=28.5
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCceEEEecCc
Q 011914 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s~ 194 (475)
+|++|++|+|||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 299
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.46 E-value=0.056 Score=51.48 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh-------CCceEEEe
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM-------GINPIMMS 191 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el-------g~~~i~vs 191 (475)
....|.|.||+|+|||++++.+++.+ |..++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 45678899999999999999999986 66655444
No 300
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.44 E-value=0.17 Score=57.81 Aligned_cols=22 Identities=23% Similarity=0.001 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~ 181 (475)
..++|.||.|+|||++.+.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999853
No 301
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.37 E-value=0.097 Score=60.48 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
++.+.|+||+|+|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 578999999999999999999864
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.32 E-value=0.028 Score=56.08 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+++...+.|+||+|+|||+|+++|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4555779999999999999999999986
No 303
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.29 E-value=0.025 Score=53.38 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCceEEEe
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs 191 (475)
...|.|+|..|||||++++.+++ +|++++..+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 45799999999999999999988 998877544
No 304
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.22 E-value=0.03 Score=52.82 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
+....+.|.||.|+|||+|.++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4456789999999999999999999864
No 305
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.18 E-value=0.023 Score=61.98 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=22.1
Q ss_pred EEEEEcCCCccHHHHHH-HHHHH--hCCceEEEecC
Q 011914 161 ILGIWGGKGQGKSFQCE-LVFAK--MGINPIMMSAG 193 (475)
Q Consensus 161 glLL~GPPGtGKT~LAk-aIA~e--lg~~~i~vs~s 193 (475)
..||+||||||||+++- .|+.. .+..++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 57899999999998544 44333 35565555544
No 306
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.97 E-value=0.039 Score=50.36 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
....+.|.|++|+|||++++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34678999999999999999998873
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.96 E-value=0.037 Score=50.44 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEe
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs 191 (475)
+..+.|.|++|+|||+++..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4678999999999999999998874 55554444
No 308
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.96 E-value=0.055 Score=56.22 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
..++|.||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4689999999999999999999864
No 309
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.93 E-value=0.041 Score=54.60 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.+..+.|.||.|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999874
No 310
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.91 E-value=0.033 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el 183 (475)
.+.|.||+|+|||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999886
No 311
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.90 E-value=0.035 Score=59.17 Aligned_cols=70 Identities=10% Similarity=0.129 Sum_probs=41.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC--CceEEEecCc-cccC-----------CCCChHHHHHHHHHHHHHHHHhCCce
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGE-LESG-----------NAGEPAKLIRQRYREAADIIKKGKMC 224 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg--~~~i~vs~s~-l~s~-----------~~Ge~e~~Ir~~f~~A~~~~~~~~p~ 224 (475)
..+++|.||+|+||||+.++++..+. ...+.+.... +.-. ..+.....+....+.+. ...|.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~L----R~~PD 335 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAAL----RQRPD 335 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTG----GGCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhh----ccCCC
Confidence 45699999999999999999998863 2344443321 2100 00111111223333332 67899
Q ss_pred eEEecccc
Q 011914 225 CLFINDLD 232 (475)
Q Consensus 225 ILfIDEiD 232 (475)
++++.|+-
T Consensus 336 ~iivgEir 343 (511)
T 2oap_1 336 YIIVGEVR 343 (511)
T ss_dssp EEEESCCC
T ss_pred eEEeCCcC
Confidence 99999984
No 312
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.87 E-value=0.041 Score=51.70 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEe
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs 191 (475)
.+..|.|.|++|+|||++++.+++.+ |.+++.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 35678899999999999999999986 45555443
No 313
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.86 E-value=0.085 Score=52.07 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh----CCceEEEecC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 193 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el----g~~~i~vs~s 193 (475)
..+..++|.||+|+|||+++..+|..+ |..+..++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356789999999999999999998763 5566666553
No 314
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.84 E-value=0.033 Score=58.14 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el 183 (475)
.++|.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998885
No 315
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.76 E-value=0.087 Score=55.98 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+..+..++|.||.|+|||++++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4567889999999999999999999874
No 316
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.73 E-value=0.2 Score=52.12 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEec
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~ 192 (475)
.|..+++.|++|+|||+++..+|..+ |..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 57889999999999999999999874 445555544
No 317
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.70 E-value=0.044 Score=48.95 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
...+|+||.|+|||+++++|+-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3678999999999999999998875
No 318
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=93.64 E-value=0.0093 Score=47.56 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCC----CCCChHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011914 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (475)
Q Consensus 311 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~~g~~i~f~gal~~~~~~~av~~ 360 (475)
++|.+||+.++++ .+++.+.+++.+++|+|++|. ++|..+...++++
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~---~l~~eAa~~ai~~ 51 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIA---AIMQEAGLRAVRK 51 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHH---HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh
Confidence 4789999988875 357777888888998888888 7777777766654
No 319
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.42 E-value=0.17 Score=53.05 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCceEEEec
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~ 192 (475)
...+..++.|+||||||++...++.. ...+.+.+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~--~~~lVlTp 192 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF--EEDLILVP 192 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT--TTCEEEES
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc--CCeEEEeC
Confidence 45578999999999999999877753 23344444
No 320
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.41 E-value=0.081 Score=49.65 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=29.4
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCc-eEEEecC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PIMMSAG 193 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~-~i~vs~s 193 (475)
..+++.|+|+|.||+||+++|+.+.+.+|.. +..++.+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~ms 46 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLS 46 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEcc
Confidence 3567899999999999999999998877642 3334443
No 321
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.34 E-value=0.29 Score=57.87 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
+++...+.|.||.|+|||+|+++|.....
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 34446799999999999999999998753
No 322
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.31 E-value=0.055 Score=51.81 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.+..|.|.|++|+|||++++.+++.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999886
No 323
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.30 E-value=0.23 Score=51.42 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=44.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh-----CCceEEEecCc---------------cccCCCCChH-HHHHHH---HHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE---------------LESGNAGEPA-KLIRQR---YREAAD 216 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el-----g~~~i~vs~s~---------------l~s~~~Ge~e-~~Ir~~---f~~A~~ 216 (475)
-++|.||+|+|||+|+..|++.. ++.++++-.++ +......++. ..++.. ...|..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEy 256 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKR 256 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 48889999999999999998863 44444433321 1111222322 222222 233333
Q ss_pred HHHhCCceeEEeccccccc
Q 011914 217 IIKKGKMCCLFINDLDAGA 235 (475)
Q Consensus 217 ~~~~~~p~ILfIDEiDal~ 235 (475)
....++..+|++|++-..+
T Consensus 257 frd~G~dVLil~DslTR~A 275 (427)
T 3l0o_A 257 LVEFNYDVVILLDSLTRLA 275 (427)
T ss_dssp HHHTTCEEEEEEECHHHHH
T ss_pred HHHcCCCEEEecccchHHH
Confidence 3347788899999987664
No 324
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.08 E-value=0.3 Score=48.86 Aligned_cols=27 Identities=33% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.|+||+|||+++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456778899999999999999998764
No 325
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.00 E-value=0.19 Score=56.17 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..++|.||.|+|||++.+.++.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46899999999999999999864
No 326
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.00 E-value=0.072 Score=57.31 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
+.....+.|.|++|+||||++++|+..++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34557799999999999999999999975
No 327
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.98 E-value=0.073 Score=50.55 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCC----ceEE
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIM 189 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~----~~i~ 189 (475)
..+..|.|.|++|+|||++++.+++.++. .++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 34677889999999999999999998644 5554
No 328
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.97 E-value=0.05 Score=52.06 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
++. ..+.|.||.|+|||||.++|+.-.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 788999999999999999999864
No 329
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.83 E-value=0.049 Score=51.90 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||+|.++|+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444679999999999999999998863
No 330
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.80 E-value=0.085 Score=54.98 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh---CCceEEEecC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s 193 (475)
.|..++|.|+||+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46789999999999999999998874 4566666653
No 331
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.80 E-value=0.074 Score=48.55 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.+.-++|.|++|+|||+|+..++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999999864
No 332
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.79 E-value=0.042 Score=51.87 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||||.++|+.-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578899999999999999998764
No 333
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.71 E-value=0.052 Score=51.64 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||||.++|+.-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344678999999999999999999764
No 334
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.69 E-value=0.19 Score=48.14 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..+.|.|+||+|||+|.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999765
No 335
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.68 E-value=0.069 Score=45.98 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-+++.|++|+|||+|++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999875
No 336
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.63 E-value=0.064 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-++|.|++|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999986
No 337
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.62 E-value=0.063 Score=58.37 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el 183 (475)
..+|+||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999877776653
No 338
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.60 E-value=0.065 Score=48.40 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.-++|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 568899999999999999999863
No 339
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.47 E-value=0.16 Score=47.83 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh--CCceEEEec
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM--GINPIMMSA 192 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el--g~~~i~vs~ 192 (475)
..+..+++.|.+|+|||+++..++..+ |..+..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456789999999999999999999775 556655553
No 340
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.46 E-value=0.058 Score=52.24 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
+....+.|.||.|+|||||.++|+.-..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4446789999999999999999998643
No 341
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.45 E-value=0.052 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...+.|.||.|+|||||.++++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999975
No 342
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.43 E-value=0.079 Score=48.80 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCCc
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~~ 186 (475)
-.++||.|++|+|||++|.++... |..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~ 42 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQ 42 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 378999999999999999999874 543
No 343
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.41 E-value=0.089 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.+.|.|.|++|+|||++++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999886
No 344
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.38 E-value=0.5 Score=54.44 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVF 180 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA 180 (475)
...++|.||.|+|||++.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4689999999999999999984
No 345
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.38 E-value=0.076 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~e 182 (475)
-+++.|++|+|||+|++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4788899999999999999875
No 346
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.37 E-value=0.057 Score=49.05 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
..+.|.|++|+|||+|++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999998853
No 347
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.36 E-value=0.094 Score=46.72 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
....-+++.|++|+|||+|+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999875
No 348
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.36 E-value=0.063 Score=51.23 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+++...+.|.||.|+|||||.++|+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445679999999999999999999764
No 349
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.29 E-value=0.074 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.....+.|.||.|+|||||.++|+.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44467999999999999999999985
No 350
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.13 E-value=0.11 Score=44.81 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.+.-+++.|++|+|||+|...+...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999764
No 351
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.12 E-value=0.09 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-+++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998865
No 352
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.10 E-value=0.086 Score=44.96 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-+++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999876
No 353
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.09 E-value=0.068 Score=51.91 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||||.++|+.-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 444678999999999999999999764
No 354
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.06 E-value=0.07 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.....+.|.||.|+|||||.++|+.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457899999999999999999984
No 355
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.06 E-value=0.11 Score=47.50 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
....++|.|++|+|||+++..++..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 346788999999999999999998864
No 356
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.05 E-value=0.07 Score=51.59 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|+|||+|.++|+...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 445679999999999999999998764
No 357
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.04 E-value=0.093 Score=44.93 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-+++.|++|+|||+|++.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 358
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.02 E-value=0.092 Score=46.26 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..+.-|+|.|++|+|||+|+..+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 33467899999999999999999875
No 359
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.98 E-value=0.072 Score=51.88 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|+|||+|.++|+...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444679999999999999999999874
No 360
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.96 E-value=0.082 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.129 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
..-..+.|.||.|||||||.++|+.-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 334568899999999999999999864
No 361
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.96 E-value=0.083 Score=53.24 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGI 185 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~ 185 (475)
...+.|.||+|+|||||+++|+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467899999999999999999998654
No 362
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.95 E-value=0.062 Score=51.79 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|+|||||.++|+.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999998764
No 363
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.94 E-value=0.095 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.+.-|++.|++|+|||+|+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3466899999999999999999875
No 364
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.90 E-value=0.26 Score=50.75 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=28.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCceEEEecC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~elg~~~i~vs~s 193 (475)
.++|++|+|+|||.++-.++...+...+.+.+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 489999999999999988888888777777654
No 365
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.86 E-value=0.065 Score=51.11 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|+|||||.++|+.-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334578999999999999999999764
No 366
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.83 E-value=0.065 Score=51.39 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|+|||||.++|+.-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344678999999999999999998874
No 367
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.82 E-value=0.066 Score=50.70 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|+|||+|.++|+...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344678999999999999999999874
No 368
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.79 E-value=0.092 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 011914 161 ILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~el 183 (475)
.+.|.||+|+|||||.++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999875
No 369
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.79 E-value=0.069 Score=50.11 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.+..+.|.||.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45577999999999999999999987
No 370
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.78 E-value=0.098 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-+++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999866
No 371
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.74 E-value=0.12 Score=51.76 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+.....+.|.||||+|||+|.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4556789999999999999999999764
No 372
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.73 E-value=0.1 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-|+|.|+||+|||+|.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998754
No 373
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.72 E-value=0.08 Score=51.18 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||||.++|+.-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 444678999999999999999999764
No 374
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.72 E-value=0.1 Score=45.47 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.+.-|+|.|++|+|||+|...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999764
No 375
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.70 E-value=0.091 Score=53.46 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|||||||.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344578899999999999999999864
No 376
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.68 E-value=0.081 Score=51.26 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||||.++|+.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 444678999999999999999998764
No 377
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.67 E-value=0.092 Score=53.51 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|||||||.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344568899999999999999999874
No 378
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.64 E-value=0.061 Score=50.61 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
....+.|.||.|+|||+|.++++...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33568899999999999999998864
No 379
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.64 E-value=0.096 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el 183 (475)
..+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999888776553
No 380
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.63 E-value=0.11 Score=45.68 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
|...+|+||.|+|||++..||+-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998765
No 381
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.61 E-value=0.1 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-+++.|++|+|||+|.+.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999876
No 382
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.59 E-value=0.069 Score=52.23 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|+|||||+++|+.-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 334578999999999999999999864
No 383
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.59 E-value=0.098 Score=45.75 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-++|.|++|+|||+|.+.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999863
No 384
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.59 E-value=0.13 Score=45.46 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.+.-|+|.|++|+|||+|+.++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3566899999999999999999876
No 385
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.58 E-value=0.081 Score=53.59 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|||||||.++||.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344578899999999999999999864
No 386
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.57 E-value=0.1 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-+++.|++|+|||+|...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 387
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.56 E-value=0.11 Score=44.72 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-+++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999865
No 388
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.54 E-value=0.18 Score=46.88 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh--CCceEEEe
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 191 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el--g~~~i~vs 191 (475)
+-|.|-|+.|+||||+++.+++.+ |.+++.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 357789999999999999999987 45555544
No 389
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.53 E-value=0.073 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||||.++|+.-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344678999999999999999999864
No 390
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.52 E-value=0.097 Score=53.74 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|||||||.++|+.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 344568899999999999999999874
No 391
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.51 E-value=0.11 Score=44.90 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-+++.|++|+|||+|.+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999876
No 392
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.50 E-value=0.098 Score=53.50 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|||||||.++||.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344578899999999999999999863
No 393
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.49 E-value=0.083 Score=47.12 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~ 181 (475)
-++|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478899999999999999986
No 394
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.48 E-value=0.14 Score=47.03 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.+..++|.|.+|+|||+|+..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34567777999999999999999885
No 395
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.44 E-value=0.28 Score=47.03 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-++|.|+||+|||+|..++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999864
No 396
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.42 E-value=0.076 Score=51.11 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
.....+.|.||.|+|||+|.++|+....
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3445789999999999999999987653
No 397
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.42 E-value=0.15 Score=48.48 Aligned_cols=34 Identities=18% Similarity=-0.005 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCccHHH-HHHHHHHH--hCCceEEEe
Q 011914 158 VPLILGIWGGKGQGKSF-QCELVFAK--MGINPIMMS 191 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~-LAkaIA~e--lg~~~i~vs 191 (475)
.....+++||.|+|||+ |.+.+-+. .+..++.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 34678899999999999 55555333 355555554
No 398
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.42 E-value=0.11 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-|++.|++|+|||+|+..+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999874
No 399
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.36 E-value=0.12 Score=44.36 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~e 182 (475)
-+++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999876
No 400
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.36 E-value=0.1 Score=50.13 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhCCce
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKMGINP 187 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~elg~~~ 187 (475)
..|.|+|++|+|||++++.+...+|++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4689999999999999999999888664
No 401
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.29 E-value=0.092 Score=53.39 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
....+.|.||.|||||||.++||.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999999864
No 402
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.28 E-value=0.11 Score=45.83 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-++|.|++|+|||+|.+.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999874
No 403
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.27 E-value=0.079 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||+|.++|+...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999999874
No 404
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.25 E-value=0.08 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||||.++|+...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578999999999999999999865
No 405
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.24 E-value=0.13 Score=44.20 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-+++.|++|+|||+|.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999875
No 406
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.21 E-value=0.1 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-|++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.14 E-value=0.12 Score=44.86 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-|++.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 408
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.11 E-value=0.097 Score=53.49 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
....+.|.||.|||||||.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34568899999999999999999864
No 409
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.11 E-value=0.27 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..|+|.|.||+|||+|...+...
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35888899999999999998654
No 410
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.11 E-value=0.12 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~ 181 (475)
-++|.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999863
No 411
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.02 E-value=0.12 Score=58.04 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...+|+||||||||+++..++..
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999987777665
No 412
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.02 E-value=0.11 Score=44.65 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~ 181 (475)
-++|.|+||+|||+|++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 413
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.01 E-value=0.07 Score=48.32 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.....+.|.|++|+|||+|.++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44567899999999999999988753
No 414
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.99 E-value=0.082 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|||||||.++||.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578899999999999999999863
No 415
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.97 E-value=0.13 Score=44.66 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|++.|++|+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999876
No 416
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=90.95 E-value=0.56 Score=45.21 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...|+|.|.||+|||+|..++...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999875
No 417
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.95 E-value=0.13 Score=44.94 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-++|.|++|+|||+|+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998754
No 418
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.84 E-value=0.14 Score=45.42 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-+++.|++|+|||+|++.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999875
No 419
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.80 E-value=0.43 Score=46.30 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-+.|.|+||+|||+|..++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999864
No 420
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.80 E-value=0.15 Score=45.04 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-++|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 355889999999999999999875
No 421
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.79 E-value=0.14 Score=45.55 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.+.-++|.|++|+|||+|...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456888999999999999999754
No 422
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.77 E-value=0.13 Score=53.01 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+....+.|.||.|||||+|.++|+.-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 44467999999999999999999974
No 423
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.77 E-value=0.15 Score=44.36 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-+++.|++|+|||+|++.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999876
No 424
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.76 E-value=0.85 Score=43.63 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEe
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 191 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs 191 (475)
-...+++||.|+|||+.+-..+.. .|..++.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 467889999999999765544444 355666655
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.76 E-value=0.15 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|++.++..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356899999999999999999875
No 426
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.75 E-value=0.25 Score=45.55 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=26.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCceEEEecC
Q 011914 162 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (475)
Q Consensus 162 lLL~GPPGtGKT~LAkaIA~el---g~~~i~vs~s 193 (475)
|.|-|+-|+||||+++.+++.+ |.+++.+..+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6688999999999999999885 6777666543
No 427
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.74 E-value=0.41 Score=45.87 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~e 182 (475)
-+.|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4778899999999999999765
No 428
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.73 E-value=0.14 Score=45.08 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|++.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999875
No 429
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.70 E-value=0.14 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-|++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999876
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.65 E-value=0.18 Score=45.24 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-|+|.|++|+|||+|++.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4467899999999999999999876
No 431
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.64 E-value=0.15 Score=44.65 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-|++.|++|+|||+|++.+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999875
No 432
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.60 E-value=0.14 Score=45.53 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-|+|.|++|+|||+|+..+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999999875
No 433
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.58 E-value=0.31 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999977776554
No 434
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.55 E-value=0.14 Score=45.05 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-|+|.|++|+|||+|+..+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 435
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.54 E-value=0.12 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
...+.|.||.|+|||||.++|+...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999999865
No 436
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.51 E-value=0.12 Score=50.88 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.....+.|.||.|+|||+|.++|+...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 444678999999999999999999874
No 437
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.47 E-value=0.14 Score=44.63 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|+..+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998654
No 438
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.42 E-value=0.19 Score=43.92 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-+++.|++|+|||+|.+.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998864
No 439
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.39 E-value=0.17 Score=45.48 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-+++.|++|+|||+|.+.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999874
No 440
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.29 E-value=0.14 Score=45.00 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~ 181 (475)
+.+.-+++.|++|+|||+|...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567799999999999999998874
No 441
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.26 E-value=0.15 Score=44.51 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.+.-++|.|++|+|||+|+..+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999999875
No 442
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.25 E-value=0.16 Score=44.82 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 011914 160 LILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~el 183 (475)
.-|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 568999999999999999887653
No 443
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.25 E-value=0.17 Score=44.33 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-|++.|++|+|||+|+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 444
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.13 E-value=0.16 Score=44.85 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~e 182 (475)
-+++.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3788999999999999999865
No 445
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.12 E-value=0.18 Score=45.03 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
..-|+|.|++|+|||+|+..+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3568999999999999999998874
No 446
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.11 E-value=0.19 Score=44.15 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999865
No 447
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.11 E-value=0.14 Score=51.79 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg 184 (475)
...++|.||.|+|||+++++++....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35699999999999999999998854
No 448
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.11 E-value=0.16 Score=53.33 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
....++|.||.|+|||+|++.|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34568888999999999999999863
No 449
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.06 E-value=0.17 Score=44.94 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999876
No 450
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.03 E-value=0.2 Score=45.02 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.+.-|+|.|++|+|||+|+..+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 44567999999999999999999765
No 451
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.02 E-value=0.19 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.+.-|+|.|++|+|||+|++.+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999999875
No 452
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=89.98 E-value=0.16 Score=57.10 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=23.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHH----hCCceEEEecC
Q 011914 161 ILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAG 193 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~e----lg~~~i~vs~s 193 (475)
.++++||||||||+++..+... .+..++.+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 5789999999999987665543 34555555544
No 453
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.97 E-value=0.2 Score=44.24 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.+.-+++.|++|+|||+|+..+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45577999999999999999999864
No 454
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.94 E-value=0.15 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-|+|.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45788899999999999999876
No 455
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.87 E-value=0.19 Score=45.12 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-|+|.|++|+|||+|+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3466899999999999999999876
No 456
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.86 E-value=0.27 Score=49.66 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHhCCc
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~elg~~ 186 (475)
..--.+.|.||+|+|||+|.+.|++.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 334568999999999999999999997654
No 457
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.85 E-value=0.12 Score=51.27 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+++...+.|.||.|+|||+|+++|+...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3445679999999999999999998864
No 458
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.85 E-value=0.18 Score=44.55 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-|+|.|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999876
No 459
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.83 E-value=0.18 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-|+|.|++|+|||+|+..+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456999999999999999999875
No 460
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.82 E-value=0.19 Score=44.13 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-|+|.|++|+|||+|+..+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999999854
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.78 E-value=0.2 Score=46.32 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHhCC
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKMGI 185 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~elg~ 185 (475)
|...+|+||.|+|||++..||+-.++-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 457889999999999999999877654
No 462
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.78 E-value=0.2 Score=44.58 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-|+|.|++|+|||+|+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999999865
No 463
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.77 E-value=0.23 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
...+.|.|+||+|||+|.++++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999863
No 464
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.77 E-value=0.18 Score=44.71 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~ 181 (475)
+.+.-+++.|++|+|||+|...+..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4566799999999999999998853
No 465
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.73 E-value=0.19 Score=44.94 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-|+|.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46899999999999999998875
No 466
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.71 E-value=0.26 Score=43.79 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-|+|.|++|+|||+|..++...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3467899999999999999999874
No 467
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.69 E-value=0.15 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-++|.|++|+|||+|+..+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999875
No 468
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.67 E-value=0.23 Score=43.99 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+...-|++.|++|+|||+|.+.+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999854
No 469
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.66 E-value=1.5 Score=43.66 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..| -|.+.|++|+|||++.+++...
T Consensus 33 ~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 344 6778899999999999999874
No 470
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.66 E-value=0.18 Score=44.96 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-|+|.|++|+|||+|+..+...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999999875
No 471
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.59 E-value=0.18 Score=51.40 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
+....+.|.||.|+|||||.++|+.-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 444678999999999999999999863
No 472
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.54 E-value=0.31 Score=50.78 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCccHHHHHHHHHHHhCCc
Q 011914 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (475)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~LAkaIA~elg~~ 186 (475)
+...-.+.|.||+|||||+|.+.|++.....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3444568899999999999999999997543
No 473
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.52 E-value=0.22 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999865
No 474
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.50 E-value=0.2 Score=44.66 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|+..+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 475
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.50 E-value=0.24 Score=44.66 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-|+|.|++|+|||+|+..+...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467899999999999999999865
No 476
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.45 E-value=0.2 Score=44.73 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-|+|.|++|+|||+|+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999888765
No 477
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.41 E-value=0.21 Score=44.61 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.+.-|+|.|++|+|||+|.+.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456999999999999999999876
No 478
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.30 E-value=0.24 Score=43.98 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-++|.|++|+|||+|.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998765
No 479
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.27 E-value=0.22 Score=44.85 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-|+|.|++|+|||+|++.+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456899999999999999999875
No 480
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.23 E-value=0.23 Score=45.01 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456888999999999999999876
No 481
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.22 E-value=0.21 Score=44.98 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 482
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.17 E-value=0.23 Score=44.99 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFA 181 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~ 181 (475)
+.-++|.|++|+|||+|.+.+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45588999999999999999874
No 483
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.15 E-value=0.21 Score=44.87 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 484
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.03 E-value=0.22 Score=45.51 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-|+|.|++|+|||+|++.+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999875
No 485
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.87 E-value=0.57 Score=49.68 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=39.9
Q ss_pred EEEEcCCCccHHHH-HHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 162 LGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 162 lLL~GPPGtGKT~L-AkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
++|.|++|+|||.| ...|++..+..++.|-.. +|+....++++++.-. -......++|+.--.|
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~------iGeR~~Ev~~~~~~~~-~~g~m~~tvvV~atad 229 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKGQDVICIYVA------IGQKQSTVAGVVETLR-QHDALDYTIVVTASAS 229 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEE------ESCCHHHHHHHHHHHH-HTTCSTTEEEEEECTT
T ss_pred EEEECCCCCCchHHHHHHHHHhhcCCcEEEEEE------CCCcchHHHHHHHHHh-hCCCcceeEEEEECCC
Confidence 78899999999999 579999987665433322 3555555555554332 0113455666665443
No 486
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.81 E-value=0.51 Score=50.13 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=39.3
Q ss_pred EEEEcCCCccHHHH-HHHHHHHhCCceEEEecCccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 011914 162 LGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (475)
Q Consensus 162 lLL~GPPGtGKT~L-AkaIA~elg~~~i~vs~s~l~s~~~Ge~e~~Ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (475)
++|.|++|+|||.| ...|++..+..++.|-.. +|+....++++.+.-. -......++|+.--.|
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~------IGeR~~Ev~e~~~~~~-~~g~m~rtvvV~atad 242 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVA------IGQKKSAIARIIDKLR-QYGAMEYTTVVVASAS 242 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEE------ESCCHHHHHHHHHHHH-HTTGGGGEEEEEECTT
T ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEE------cCCCcHHHHHHHHHHH-hCCCcceeEEEEECCC
Confidence 88999999999999 579999987765433321 2454555555544332 0113345666655443
No 487
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.74 E-value=0.29 Score=44.44 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
....-|+|.|++|+|||+|+..+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999998865
No 488
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.72 E-value=0.24 Score=45.19 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|++.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998865
No 489
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=88.71 E-value=0.54 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 011914 161 ILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 161 glLL~GPPGtGKT~LAkaIA~e 182 (475)
.|.|.|.||+|||+|...++..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4788899999999999998654
No 490
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.70 E-value=0.24 Score=46.36 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.+.-|+|.|++|+|||+|..++...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3467899999999999999999875
No 491
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.61 E-value=0.25 Score=43.97 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 011914 160 LILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 160 ~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.-|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999876
No 492
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.58 E-value=0.29 Score=43.97 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+...-|++.|++|+|||+|+..+...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34466999999999999999998643
No 493
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.56 E-value=0.14 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=10.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|+|.|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988755
No 494
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.49 E-value=0.24 Score=43.80 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
..-|++.|++|+|||+|...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999865
No 495
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.45 E-value=0.45 Score=48.14 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH---hCCceEEEec
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e---lg~~~i~vs~ 192 (475)
...+++.||+|+|||++++.++.. .|..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 346889999999999999998876 3556555554
No 496
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=88.38 E-value=0.27 Score=49.08 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHHh
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~el 183 (475)
|...+|+||.|+|||++.+||+-.+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999997654
No 497
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.31 E-value=0.23 Score=51.70 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.5
Q ss_pred CCCeE--EEEEcCCCccHHHHHHHHHHH
Q 011914 157 KVPLI--LGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 157 ~~p~g--lLL~GPPGtGKT~LAkaIA~e 182 (475)
+.... +.|.||+|+|||||.++|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34445 889999999999999999875
No 498
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.30 E-value=0.31 Score=43.65 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
...-|+|.|++|+|||+|...+...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998754
No 499
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.30 E-value=0.27 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHHH
Q 011914 159 PLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 159 p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
+.-|+|.|++|+|||+|+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 500
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.24 E-value=0.26 Score=43.81 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHHH
Q 011914 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (475)
Q Consensus 158 ~p~glLL~GPPGtGKT~LAkaIA~e 182 (475)
.+.-|+|.|++|+|||+|+..+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999988654
Done!