Query 011915
Match_columns 475
No_of_seqs 214 out of 810
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:37:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00148 potassium transporter 100.0 2E-150 4E-155 1228.2 46.7 470 1-475 298-785 (785)
2 PLN00149 potassium transporter 100.0 1E-149 2E-154 1223.3 47.9 465 1-475 299-779 (779)
3 PLN00150 potassium ion transpo 100.0 1E-149 2E-154 1221.5 47.7 465 1-475 315-779 (779)
4 PLN00151 potassium transporter 100.0 1E-149 3E-154 1220.7 48.5 470 1-475 375-852 (852)
5 TIGR00794 kup potassium uptake 100.0 4E-132 9E-137 1078.3 44.7 419 1-475 269-688 (688)
6 PRK10745 trkD potassium transp 100.0 2E-116 3E-121 944.4 39.2 377 1-475 243-622 (622)
7 PF02705 K_trans: K+ potassium 100.0 4E-108 8E-113 873.0 30.9 303 1-305 232-534 (534)
8 COG3158 Kup K+ transporter [In 100.0 8E-107 2E-111 851.3 35.6 380 1-475 248-627 (627)
9 PF14362 DUF4407: Domain of un 78.1 20 0.00043 36.5 10.5 86 120-205 13-111 (301)
10 PF06570 DUF1129: Protein of u 73.6 14 0.00029 35.8 7.6 21 180-200 179-199 (206)
11 TIGR00911 2A0308 L-type amino 60.9 42 0.00091 36.3 9.0 22 61-82 335-356 (501)
12 COG4059 MtrE Tetrahydromethano 54.2 12 0.00025 37.4 3.0 40 167-206 242-287 (304)
13 PRK10655 potE putrescine trans 52.9 2.5E+02 0.0054 29.7 13.1 15 68-82 297-311 (438)
14 PRK10435 cadB lysine/cadaverin 52.5 2.1E+02 0.0045 30.4 12.5 66 66-137 293-363 (435)
15 TIGR00930 2a30 K-Cl cotranspor 49.9 5.4E+02 0.012 31.0 17.5 62 59-123 402-463 (953)
16 KOG3643 GABA receptor [Signal 49.5 11 0.00024 40.8 2.3 89 75-167 225-323 (459)
17 TIGR00907 2A0304 amino acid pe 47.7 1.1E+02 0.0023 32.9 9.5 21 181-201 454-474 (482)
18 PF05313 Pox_P21: Poxvirus P21 47.6 38 0.00082 32.8 5.2 57 8-74 93-149 (189)
19 TIGR00908 2A0305 ethanolamine 44.8 2E+02 0.0042 30.5 10.8 22 61-82 294-315 (442)
20 TIGR00909 2A0306 amino acid tr 44.8 1.2E+02 0.0027 31.7 9.2 84 41-129 276-359 (429)
21 PF08733 PalH: PalH/RIM21; In 43.0 1.3E+02 0.0029 31.7 9.0 137 62-207 168-323 (348)
22 PRK11049 D-alanine/D-serine/gl 39.8 1.9E+02 0.0041 31.1 9.8 32 51-82 302-333 (469)
23 PF02660 G3P_acyltransf: Glyce 37.6 3.2E+02 0.0069 26.0 9.9 84 112-205 90-175 (178)
24 PF05297 Herpes_LMP1: Herpesvi 37.5 11 0.00024 39.0 0.0 59 144-205 126-189 (381)
25 PRK15049 L-asparagine permease 37.4 4E+02 0.0086 29.1 12.0 22 61-82 321-342 (499)
26 TIGR03810 arg_ornith_anti argi 35.1 5.9E+02 0.013 27.3 14.0 44 39-82 274-317 (468)
27 PRK14417 membrane protein; Pro 34.0 2.7E+02 0.0059 28.0 9.1 101 113-219 100-201 (232)
28 COG0531 PotE Amino acid transp 33.6 4.3E+02 0.0094 27.5 11.2 41 41-81 284-324 (466)
29 TIGR01940 nqrE NADH:ubiquinone 32.0 1.6E+02 0.0035 28.9 7.0 47 101-147 14-62 (200)
30 PF13520 AA_permease_2: Amino 31.5 3.6E+02 0.0079 28.0 10.2 93 40-138 269-367 (426)
31 PF05545 FixQ: Cbb3-type cytoc 31.4 43 0.00093 25.1 2.4 27 191-217 21-47 (49)
32 PRK05151 electron transport co 30.2 2.1E+02 0.0045 28.0 7.4 47 101-147 15-63 (193)
33 TIGR03813 put_Glu_GABA_T putat 30.0 5.1E+02 0.011 27.8 11.2 19 181-199 434-452 (474)
34 PF02508 Rnf-Nqr: Rnf-Nqr subu 29.9 2.2E+02 0.0048 27.5 7.5 87 101-188 15-110 (190)
35 PRK11387 S-methylmethionine tr 28.7 6.1E+02 0.013 27.2 11.5 13 70-82 316-328 (471)
36 PRK13108 prolipoprotein diacyl 27.9 2.1E+02 0.0045 31.6 7.7 19 123-141 24-42 (460)
37 KOG3788 Predicted divalent cat 27.3 7.9E+02 0.017 27.0 11.6 125 56-193 113-262 (441)
38 TIGR00905 2A0302 transporter, 27.1 8E+02 0.017 26.3 12.5 43 40-82 279-321 (473)
39 PRK14419 membrane protein; Pro 26.4 6.1E+02 0.013 24.7 10.3 25 112-136 98-122 (199)
40 TIGR00913 2A0310 amino acid pe 25.7 7.6E+02 0.016 26.4 11.6 29 54-82 300-328 (478)
41 PF01790 LGT: Prolipoprotein d 25.1 6.2E+02 0.013 25.1 10.1 28 174-201 80-109 (256)
42 COG2179 Predicted hydrolase of 25.1 15 0.00034 35.1 -1.2 60 410-471 55-118 (175)
43 TIGR00145 FTR1 family protein. 24.3 3.8E+02 0.0083 27.6 8.5 31 184-214 79-109 (283)
44 PRK11357 frlA putative fructos 24.0 6.8E+02 0.015 26.5 10.7 50 68-123 305-355 (445)
45 PF11086 DUF2878: Protein of u 23.9 3.1E+02 0.0068 25.5 7.2 82 121-206 19-100 (152)
46 PRK12456 Na(+)-translocating N 23.9 2.5E+02 0.0054 27.6 6.7 47 101-147 16-64 (199)
47 PF11712 Vma12: Endoplasmic re 23.7 2.7E+02 0.0059 25.3 6.7 53 126-178 82-139 (142)
48 PF06155 DUF971: Protein of un 23.3 46 0.00099 27.8 1.4 15 444-458 25-39 (89)
49 PRK12437 prolipoprotein diacyl 23.3 4.2E+02 0.0091 26.8 8.5 22 123-144 20-41 (269)
50 TIGR03428 ureacarb_perm permea 23.2 9.4E+02 0.02 25.8 13.2 35 53-87 307-344 (475)
51 PRK01061 Na(+)-translocating N 23.2 2.5E+02 0.0055 28.4 6.8 45 101-145 22-68 (244)
52 TIGR02454 CbiQ_TIGR cobalt ABC 22.9 3.9E+02 0.0084 24.9 7.8 12 213-224 113-124 (198)
53 PRK14409 membrane protein; Pro 22.7 7.4E+02 0.016 24.3 10.9 38 113-150 99-138 (205)
54 PRK10836 lysine transporter; P 22.3 8.9E+02 0.019 26.1 11.4 19 181-199 449-468 (489)
55 cd05900 Ig_Aggrecan Immunoglob 22.0 1.1E+02 0.0024 26.8 3.6 27 282-308 76-102 (112)
56 PRK00701 manganese transport p 21.6 4.2E+02 0.009 28.8 8.6 33 96-128 104-136 (439)
57 PRK14397 membrane protein; Pro 21.0 8.4E+02 0.018 24.4 10.0 83 112-205 97-181 (222)
58 TIGR01943 rnfA electron transp 20.3 3.5E+02 0.0075 26.4 6.8 41 105-145 18-60 (190)
No 1
>PLN00148 potassium transporter; Provisional
Probab=100.00 E-value=1.7e-150 Score=1228.19 Aligned_cols=470 Identities=44% Similarity=0.834 Sum_probs=410.4
Q ss_pred CeEeehhhhHHHHHHhhhhhhhhhccCCCcccCcccccccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCC
Q 011915 1 MQIAFTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFP 80 (475)
Q Consensus 1 Iq~aw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fP 80 (475)
||+||+++|||||+|||+||||||++||++.+||||+++|+|++||++++||+||||||||||||+||+++||++|||||
T Consensus 298 Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fP 377 (785)
T PLN00148 298 IRLAFATVIYPCLVVQYMGQAAFLSKNIPSIPNSFYDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFP 377 (785)
T ss_pred eEEeeeehHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 011915 81 RLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPL 160 (475)
Q Consensus 81 r~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~ 160 (475)
|+||+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++||||+++||+.+||||++++++|++
T Consensus 378 rvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~ 457 (785)
T PLN00148 378 RVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGLACMTVMFITTFLMALVIIFVWQKSIILAALFLL 457 (785)
T ss_pred CceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhhhheeeHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCChHHHHHhcCcCCCcccceEEEEeec
Q 011915 161 VFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNE 240 (475)
Q Consensus 161 ~f~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~ 240 (475)
+|+++|++|||||+.||+||||+||++|++++++|++||||++++++++.+|++|++++.++.++.++.||||+|+|||+
T Consensus 458 ~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~RVpG~~vf~t~ 537 (785)
T PLN00148 458 FFGFIEGVYLSAALMKVPQGGWVPLVLSAIFMSIMYIWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSE 537 (785)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999888888888999999999999
Q ss_pred CCCCchhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHH
Q 011915 241 LVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVA 320 (475)
Q Consensus 241 ~~~~vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~yr~~~ryGy~d~~~~~~~~f~~~lv~ 320 (475)
+++|+|++|.||++|||++||++||+|||++|+|+||++|||++++++++++++|||++||||||.+++ ++|||++|++
T Consensus 538 ~~~gvP~~f~h~~~~~~~lHe~~Vfv~ik~~~vP~V~~~eR~~v~~i~~~~yr~~r~vvryGy~d~~~~-~~dFe~~Lv~ 616 (785)
T PLN00148 538 LATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQRD-DGDFENMLVQ 616 (785)
T ss_pred CCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEccCccccc-chHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998999999999999999877 9999999999
Q ss_pred HHHHHHHHhhhhhHHh---h---ccccCccccccc-cCCCCCCCCCC-------CccccccccccccccccCCCCCCccc
Q 011915 321 SLEKFLRKEAQDLALE---R---NLLESDLDSVSV-ASRDPEASGSY-------GTEELKIPLMHERRFDESGTSASEET 386 (475)
Q Consensus 321 ~L~~FI~~e~~~~~~~---~---~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (475)
+|++|||+|+.+...+ + +++ ++++.... ...+.....++ ...+.+....+.. ++.++.+.+.
T Consensus 617 ~L~~FIr~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 692 (785)
T PLN00148 617 SIAEFIQMEAEEPQSSASESSSNDGR-MAVISTRDVQSSSLLMVSEQELADIDDSIQSSKSLTLQSL-QSAYEDENPG-- 692 (785)
T ss_pred HHHHHHHhhhhccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-cccccccccc--
Confidence 9999999987431000 0 111 11110000 00000000000 0000000000000 0111111111
Q ss_pred cCCCCCcccccC----CCccHHHHHHHHHHHHhCCcEEEeeecEEEecCCCChHHHHHHHHHHHHHhhhccCCcccccCC
Q 011915 387 TSALPSSVMALD----EDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVP 462 (475)
Q Consensus 387 ~~~~~~~~~~~~----~~~~v~~El~~L~~A~eaGVvYIlG~~~v~ar~~Ss~~KK~vIn~~Y~fLRkN~R~~~~~L~IP 462 (475)
..+++++++..+ .+++++||+++|++|+|+||+||+||++||||++|||+||++||++|+|||||||+|.++|+||
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~El~~L~~A~eaGVvYIlG~s~v~Ar~~Ss~~KKivIn~~Y~FLRkNcR~~~~~L~IP 772 (785)
T PLN00148 693 QSRRRRVRFQLPENPGMDPSVREELMDLIEAKEAGVAYIMGHSYVKARRSSSFLKKLAIDIGYSFLRKNCRGPAVALNIP 772 (785)
T ss_pred cccccceeecccccccccchHHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCC
Confidence 113455666332 3578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEeeeEEEC
Q 011915 463 HMNILQVGMTYMV 475 (475)
Q Consensus 463 h~~LlEVGmvy~v 475 (475)
|++||||||+|||
T Consensus 773 h~~LleVGM~Y~V 785 (785)
T PLN00148 773 HISLIEVGMIYYV 785 (785)
T ss_pred hHHeEEcceEEEC
Confidence 9999999999997
No 2
>PLN00149 potassium transporter; Provisional
Probab=100.00 E-value=9.7e-150 Score=1223.29 Aligned_cols=465 Identities=46% Similarity=0.814 Sum_probs=407.2
Q ss_pred CeEeehhhhHHHHHHhhhhhhhhhccCCC---cccCcccccccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcC
Q 011915 1 MQIAFTLVVFPCLLLAYMGQAAYLMKYPD---SANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALG 77 (475)
Q Consensus 1 Iq~aw~~~V~P~LlL~Y~GQ~A~ll~~p~---~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg 77 (475)
||+||+++|||||+|||+||||||++||+ +.+||||+++|+|++||++++||+||||||||||||+||+++||++||
T Consensus 299 Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg 378 (779)
T PLN00149 299 IKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALG 378 (779)
T ss_pred eeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999996 566699999999999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 011915 78 CFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLC 157 (475)
Q Consensus 78 ~fPr~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~ 157 (475)
||||+||+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++||||+++||+.+|+|+++++++
T Consensus 379 ~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~lv~~~~W~~~~~~~~~ 458 (779)
T PLN00149 379 CFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHKSVLLAIC 458 (779)
T ss_pred CCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhhhehHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhcccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCChHHHHHhcCcCCCcccceEEEE
Q 011915 158 FPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLL 237 (475)
Q Consensus 158 ~~~~f~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if 237 (475)
|+++|+++|++|||||+.||+||||+||++|++++++|++||||++++++++.++++|++++.++.++.++.||||+|+|
T Consensus 459 f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf 538 (779)
T PLN00149 459 FIFFFGTIEALYFSASLIKFLEGAWVPIALSFIFLLVMYVWHYGTLKRYEFDVQNKVSINWLLSLGPSLGIVRVRGIGLI 538 (779)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhccCCCCcccCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888999999999
Q ss_pred eecCCCCchhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHH
Q 011915 238 YNELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQL 317 (475)
Q Consensus 238 ~t~~~~~vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~yr~~~ryGy~d~~~~~~~~f~~~ 317 (475)
||++.+|+|++|.||++|+|++||++||+|||++|+|+||++|||++++++++++++|||++||||||..++ ++|||++
T Consensus 539 ~t~~~~gvP~~f~h~~~~~~~lhe~~Vfv~ik~~~vP~V~~~eR~~v~~i~~~~~~~~r~vvryGy~d~~~d-~~dFE~~ 617 (779)
T PLN00149 539 HTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGRIGPKEYRLYRCIVRYGYRDVHKD-DMEFEKD 617 (779)
T ss_pred EcCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEeecccccc-chHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887 8999999
Q ss_pred HHHHHHHHHHHhhhhhHHhh------ccccCccccccc-cCCCCCC-CCCCCcc-ccccccccccccccCCCCCCccccC
Q 011915 318 LVASLEKFLRKEAQDLALER------NLLESDLDSVSV-ASRDPEA-SGSYGTE-ELKIPLMHERRFDESGTSASEETTS 388 (475)
Q Consensus 318 lv~~L~~FI~~e~~~~~~~~------~~~~~~~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (475)
|+++|++|||+|+.+...++ +++ ++++.+.+ +..+... .++.++. ..+.+..... .+.+. ++
T Consensus 618 Lve~L~~FI~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~ 688 (779)
T PLN00149 618 LVCSIAEFIRSEKPEPNGAPENEEGEDER-MTVVGTCSTHLEGIQLREDDSDKQEPAGTSELREI----RSPPV----SR 688 (779)
T ss_pred HHHHHHHHHHhhhhccccccccccccccc-ccccccccccccccccccccccccccccccccccc----cCccc----cC
Confidence 99999999999874211000 111 22211000 0000000 0000000 0000000000 00000 11
Q ss_pred CCCCccccc----CCCccHHHHHHHHHHHHhCCcEEEeeecEEEecCCCChHHHHHHHHHHHHHhhhccCCcccccCCCC
Q 011915 389 ALPSSVMAL----DEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHM 464 (475)
Q Consensus 389 ~~~~~~~~~----~~~~~v~~El~~L~~A~eaGVvYIlG~~~v~ar~~Ss~~KK~vIn~~Y~fLRkN~R~~~~~L~IPh~ 464 (475)
..+++++.. +.+++++||+++|++|||+||+||+||++||||++|||+||++||++|+|||||||+|.++|+|||+
T Consensus 689 ~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~s~v~Ar~~Ss~~KK~vIn~~Y~FLRkNcR~~~~~L~IPh~ 768 (779)
T PLN00149 689 PKKRVRFVVPESPKIDRGAREELQELMEAREAGMAYILGHSYVRAKQGSSMMKKLVINYGYDFLRRNSRGPRYALSVPHA 768 (779)
T ss_pred cccceeeccccccccchhHHHHHHHHHHHHHcCcEEEecCceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChH
Confidence 234555532 2346889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEeeeEEEC
Q 011915 465 NILQVGMTYMV 475 (475)
Q Consensus 465 ~LlEVGmvy~v 475 (475)
+||||||+|||
T Consensus 769 ~LleVGmvY~v 779 (779)
T PLN00149 769 STLEVGMVYHV 779 (779)
T ss_pred HeEEeceEEEC
Confidence 99999999997
No 3
>PLN00150 potassium ion transporter family protein; Provisional
Probab=100.00 E-value=9.5e-150 Score=1221.51 Aligned_cols=465 Identities=47% Similarity=0.851 Sum_probs=407.4
Q ss_pred CeEeehhhhHHHHHHhhhhhhhhhccCCCcccCcccccccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCC
Q 011915 1 MQIAFTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFP 80 (475)
Q Consensus 1 Iq~aw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fP 80 (475)
||+||+++|||||+|||+||||||++||++.+||||+++|+|++||++++||+||||||||||||+||+++||++|||||
T Consensus 315 Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~~~~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fP 394 (779)
T PLN00150 315 MQIAFTSLVYPCLLLTYLGQAAYLVKHMEDVNDPFYRSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFP 394 (779)
T ss_pred eeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 011915 81 RLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPL 160 (475)
Q Consensus 81 r~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~ 160 (475)
|+||+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++||||+++||+.+||||++++++|++
T Consensus 395 rvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~~v~~~~W~~~~~~~~~f~~ 474 (779)
T PLN00150 395 RVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGIAVVGVMIITTCLMTLVMIIIWRKHILLALLFFT 474 (779)
T ss_pred CceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhhheehhhHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCChHHHHHhcCcCCCcccceEEEEeec
Q 011915 161 VFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNE 240 (475)
Q Consensus 161 ~f~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~ 240 (475)
+|+++|++|||||+.||+||||+||++|++++++|++||||++++++++.+|++|++++.++.++.++.||||+|+|||+
T Consensus 475 ~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~ 554 (779)
T PLN00150 475 VFAIIEGIYFSAVLFKVTQGGWVPLVIAAVFGTVMYTWHYGTRKRYLYEMQHKVSVGWLLGLGPSLGLVRVPGIGLMYTD 554 (779)
T ss_pred HHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHhhcccCCCcccCcEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999888888888899999999999
Q ss_pred CCCCchhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHH
Q 011915 241 LVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVA 320 (475)
Q Consensus 241 ~~~~vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~yr~~~ryGy~d~~~~~~~~f~~~lv~ 320 (475)
+++|+|++|.||++|||++||++||+|||++|+|+||++|||++++++++++++|||++||||||..++ ++|||++|++
T Consensus 555 ~~~gvP~~f~h~v~~~~~lhe~~Vfl~i~~~~vP~V~~~eR~~v~~i~~~~~r~~r~vvryGy~d~~~d-~~dFE~~Lve 633 (779)
T PLN00150 555 LAHGVPPLFSHFITNLPAIHSTVVFVCIKYLPVNTVPQDERFLIRRIGPRAYSMYRCAARYGYTDLEKK-DDNFEQLLIA 633 (779)
T ss_pred CCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEccCcCccc-chHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998899999999999999887 8999999999
Q ss_pred HHHHHHHHhhhhhHHhhccccCccccccccCCCCCCCCCCCccccccccccccccccCCCCCCccccCCCCCcccccCCC
Q 011915 321 SLEKFLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERRFDESGTSASEETTSALPSSVMALDED 400 (475)
Q Consensus 321 ~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (475)
+|++|||+|+.+...+++. +++..+.++..... ++.....+.+.+...+...+.++.+.+ ..++.++ .+.+
T Consensus 634 sL~~FIr~e~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~ 704 (779)
T PLN00150 634 SLERFIEIESFREQSDLES--MAASWTPEELMGEG-NSVGSGLFTQYDQSDINFATSQEWKRP-----SSQEDSV-SGHS 704 (779)
T ss_pred HHHHHHHhhhhcccccccc--cccccccccccccC-Ccccccccccccccccccccccccccc-----ccccccc-cccc
Confidence 9999999987422111111 12111110000000 000000000000000000000010100 1122233 2335
Q ss_pred ccHHHHHHHHHHHHhCCcEEEeeecEEEecCCCChHHHHHHHHHHHHHhhhccCCcccccCCCCCeeEeeeEEEC
Q 011915 401 PSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 475 (475)
Q Consensus 401 ~~v~~El~~L~~A~eaGVvYIlG~~~v~ar~~Ss~~KK~vIn~~Y~fLRkN~R~~~~~L~IPh~~LlEVGmvy~v 475 (475)
++++||+++|++|+|+||+||+||++||||++|||+||++||++|+|||||||+|.++|+|||++||||||+|||
T Consensus 705 ~~v~eEl~~L~~A~eaGVvYIlG~~~v~Ak~~Ss~~KK~vIN~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~V 779 (779)
T PLN00150 705 SDTQDEVAFLNKCKEAGVVYILGNNDVKARKDSGFFKKVIINYIYTFLRRISRDSEVVLNIPHECLLKVGMVYYV 779 (779)
T ss_pred ccHHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCCccccCCChHHeEEeceEEEC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999997
No 4
>PLN00151 potassium transporter; Provisional
Probab=100.00 E-value=1.3e-149 Score=1220.67 Aligned_cols=470 Identities=69% Similarity=1.163 Sum_probs=407.4
Q ss_pred CeEeehhhhHHHHHHhhhhhhhhhccCCCcccCcccccccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCC
Q 011915 1 MQIAFTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFP 80 (475)
Q Consensus 1 Iq~aw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fP 80 (475)
||+||+++|||||+|||+||||||++||++.+||||+++|+|++||++++||+||||||||||||+||+++||++|||||
T Consensus 375 Iqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~~~npFy~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fP 454 (852)
T PLN00151 375 IQLAFTCLVLPCLLLAYMGQAAYLMKNPDSAEQIFFSSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFP 454 (852)
T ss_pred eeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 011915 81 RLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPL 160 (475)
Q Consensus 81 r~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~ 160 (475)
|+||+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++||||+++||+.+||||++++++|++
T Consensus 455 RvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~ 534 (852)
T PLN00151 455 RLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMVSTILVTLVMLLIWQTNIFLVLCFPV 534 (852)
T ss_pred CceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCChHHHHHhcCcCCCcccceEEEEeec
Q 011915 161 VFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNE 240 (475)
Q Consensus 161 ~f~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~ 240 (475)
+|+++|++|||||+.||+||||+||++|++++++|++||||++++|+++.+|++|++++.++.++.++.||||+|+|||+
T Consensus 535 ~F~~ie~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM~~W~yG~~~~~~~~~~~~vs~~~~~~L~~~~~~~RVpGiglf~t~ 614 (852)
T PLN00151 535 VFLSVELVFFSSVLSSVGDGGWIPLVFASVFLCIMYIWNYGSKLKYQSEVRQKLSMDLMRELGSNLGTIRAPGIGLLYNE 614 (852)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred CCCCchhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHH
Q 011915 241 LVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVA 320 (475)
Q Consensus 241 ~~~~vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~yr~~~ryGy~d~~~~~~~~f~~~lv~ 320 (475)
+++|+|++|.||++|+|++||++||||||++|+|+||++|||++++++++++|+|||++||||||.++++++|||++|++
T Consensus 615 ~~~gvP~~f~h~i~~~~alHe~~Vfv~ik~~~vP~V~~~eR~lv~ri~~~~~~~yr~vvrYGY~D~~~~~~~dFe~~Lv~ 694 (852)
T PLN00151 615 LVKGIPAIFGHFLTTLPAIHSTIIFVCIKYVPVPVVPQEERFLFRRVCPKDYHMFRCIARYGYKDVRKENHQAFEQLLIE 694 (852)
T ss_pred CCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEcCCCCCCEEEEEEEEeecccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986338999999999
Q ss_pred HHHHHHHHhhhhhHHhhccccCccccccccCCCC-CC-CCCCCccccccccccccccccCCCCCC--ccc---cCC-CCC
Q 011915 321 SLEKFLRKEAQDLALERNLLESDLDSVSVASRDP-EA-SGSYGTEELKIPLMHERRFDESGTSAS--EET---TSA-LPS 392 (475)
Q Consensus 321 ~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~-~~~ 392 (475)
+|++|||+|+.+...+++.. .+. +++...+.. .. .+..+..+.+.+...... + .+.+.. ..+ ++. .++
T Consensus 695 ~l~~fi~~e~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 770 (852)
T PLN00151 695 SLEKFIRREAQERALESDGN-DDT-DDEDSVTSSRVLIAPNGSVYSLGVPLLADYR-L-TSKPIPEASTSEEVSPVLPSS 770 (852)
T ss_pred HHHHHHHhhhhhcccccccc-ccc-cccccccccccccCCCccccccccccccccc-c-ccccccccccccccccccccc
Confidence 99999999875311111000 000 000000000 00 000000000000000000 0 000000 000 000 122
Q ss_pred cccccCCCccHHHHHHHHHHHHhCCcEEEeeecEEEecCCCChHHHHHHHHHHHHHhhhccCCcccccCCCCCeeEeeeE
Q 011915 393 SVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMT 472 (475)
Q Consensus 393 ~~~~~~~~~~v~~El~~L~~A~eaGVvYIlG~~~v~ar~~Ss~~KK~vIn~~Y~fLRkN~R~~~~~L~IPh~~LlEVGmv 472 (475)
+++ .+.+++++||+++|++|+|+||+||+||++||||++|+|+||++||++|+|||||||+|.++|+|||++||||||+
T Consensus 771 ~~~-~~~~~~~~~El~~l~~a~e~Gv~yilG~~~v~a~~~S~~~Kk~~in~~Y~fLRkN~R~~~~~L~iP~~~lleVGm~ 849 (852)
T PLN00151 771 SMS-SDEDQSLEYELSFIREAKESGVVYLLGHGDVRARKNSWFIKKLVINYFYAFLRKNCRRGIANLSVPHSNIMQVGMT 849 (852)
T ss_pred ccc-cccCccHHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceE
Confidence 333 2335789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEC
Q 011915 473 YMV 475 (475)
Q Consensus 473 y~v 475 (475)
|||
T Consensus 850 Y~v 852 (852)
T PLN00151 850 YMV 852 (852)
T ss_pred EEC
Confidence 997
No 5
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=100.00 E-value=4e-132 Score=1078.31 Aligned_cols=419 Identities=40% Similarity=0.742 Sum_probs=392.8
Q ss_pred CeEeehhhhHHHHHHhhhhhhhhhccCCCcccCcccccccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCC
Q 011915 1 MQIAFTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFP 80 (475)
Q Consensus 1 Iq~aw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fP 80 (475)
||+||+++|||||+|||+||||||++||++.+||||+++|+|++||+++|||+||||||||+|||+||+++||++|||||
T Consensus 269 Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~P 348 (688)
T TIGR00794 269 IQLAWFTFVYPSLILCYIGQAAYLSKHPEAIKNPFFLSIPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFP 348 (688)
T ss_pred ceeehHHHHHHHHHHHHcchHHHHhcCcchhcCcHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 011915 81 RLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPL 160 (475)
Q Consensus 81 r~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~ 160 (475)
|+||+|||++++||||||+|||+||++|+++|++||||++||+|||+||++||+|||+|++++|+.+|||+++++++|++
T Consensus 349 r~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGiaVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~ 428 (688)
T TIGR00794 349 RVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGIAVTGTFLVTTCLMTVVMTIVWKWNIYFVALFLL 428 (688)
T ss_pred CceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhhhhhhhhHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCChHHHHHhcCcCC-CcccceEEEEee
Q 011915 161 VFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLG-TVRVPGIGLLYN 239 (475)
Q Consensus 161 ~f~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rvpG~~if~t 239 (475)
+|+.+|++||+||+.||+||||+||++|++++++|++|+||++++++++.++++|+++|++.+.+.. ..|+||+|+|+|
T Consensus 429 ~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~l~rvpG~avf~t 508 (688)
T TIGR00794 429 VFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSVMTTWRYGRFRKLRRDHEHRVSISALIASLQPKPGLVRVPGIGIYYS 508 (688)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCcccCCeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999998654443 489999999999
Q ss_pred cCCCCchhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHH
Q 011915 240 ELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLV 319 (475)
Q Consensus 240 ~~~~~vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~yr~~~ryGy~d~~~~~~~~f~~~lv 319 (475)
++++++|++|.||++|||++||++||+||+++|+|+||++||+.++++++++ |+|||++||||||+++. +++|+++++
T Consensus 509 ~~~~~vP~~~~h~l~~~~~lhe~~vfltv~~~~~P~Vp~~eR~~v~~l~~~~-g~~rv~~~yGf~e~~~~-~~~l~~~ii 586 (688)
T TIGR00794 509 NLVNGIPAVFGHLVTKFPSIHEVFIFLSLRTLDAPTVHNEERVQISQVGPTE-GMYRCVIRYGFMDTPNE-PKELAAHIV 586 (688)
T ss_pred CCccCCCHHHHHHHHhCCccceEEEEEEEEECCCCcCCcceEEEEEEEcCCC-CEEEEEEEecCCcCCCc-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999754 89999999999999998 889999999
Q ss_pred HHHHHHHHHhhhhhHHhhccccCccccccccCCCCCCCCCCCccccccccccccccccCCCCCCccccCCCCCcccccCC
Q 011915 320 ASLEKFLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERRFDESGTSASEETTSALPSSVMALDE 399 (475)
Q Consensus 320 ~~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (475)
++|.+||+++..+...+.++ . + +++ .
T Consensus 587 ~~L~~fi~~~~~~~~~~~~~---------------~---~-------------------~~~-------------~---- 612 (688)
T TIGR00794 587 NSIVEFVEHECGFNLNNLEE---------------L---S-------------------DKR-------------C---- 612 (688)
T ss_pred HHHHHHHHHHhhhccccccc---------------c---c-------------------ccc-------------c----
Confidence 99999999865310000000 0 0 000 0
Q ss_pred CccHHHHHHHHHHHHhCCcEEEeeecEEEecCCCChHHHHHHHHHHHHHhhhccCCcccccCCCCCeeEeeeEEEC
Q 011915 400 DPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 475 (475)
Q Consensus 400 ~~~v~~El~~L~~A~eaGVvYIlG~~~v~ar~~Ss~~KK~vIn~~Y~fLRkN~R~~~~~L~IPh~~LlEVGmvy~v 475 (475)
+.+.+||++++++|+|+||+|++||++++++++|+++||+.||++|.|||||||++...++|||+|++||||.||+
T Consensus 613 ~~~~eee~~~~~~~~~~gv~yflg~~~~~~~~~~~~~~~~~I~~lf~~l~rn~~~~~~~~~iP~~rvvevG~~~~i 688 (688)
T TIGR00794 613 RMPIEEIFENAMETKEHGYSYFMGEESLILKKRSPILRKIRVNHVFLFIRRNARRAPKVLEIPPDRLLEVGTVVEI 688 (688)
T ss_pred ccchHHHHHHHHHHhhcCCEEEeeceEEEECCCccHHHHHHHHHHHHHHHHhccChhhheeCChhhEEEEeeEEEC
Confidence 1135789999999999999999999999999999999999999999999999999999999999999999999996
No 6
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=100.00 E-value=1.6e-116 Score=944.44 Aligned_cols=377 Identities=29% Similarity=0.536 Sum_probs=352.6
Q ss_pred CeEeehhhhHHHHHHhhhhhhhhhccCCCcccCcccccccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCC
Q 011915 1 MQIAFTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFP 80 (475)
Q Consensus 1 Iq~aw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fP 80 (475)
||+||+++|||||+|||+||||||++||++.+||||.++|+|++||++++||+||||||||+|||+||+++||++|||||
T Consensus 243 Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~P 322 (622)
T PRK10745 243 IRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLP 322 (622)
T ss_pred eeeeehhhHHHHHHHHhcchHHHHhcCchhhcCcHHHhCChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 011915 81 RLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPL 160 (475)
Q Consensus 81 r~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~ 160 (475)
|+||+|||++++||||||+|||+||++|++++++||||++||+|||+||++||+|||+|++++++.+|||++++++++++
T Consensus 323 rl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiAVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~ 402 (622)
T PRK10745 323 PMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALILI 402 (622)
T ss_pred CceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhhhheeHhHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCChHHHHHhcCcCCCcccceEEEEeec
Q 011915 161 VFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNE 240 (475)
Q Consensus 161 ~f~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~ 240 (475)
+|+++|++||+||+.|++||||+||++|++++++|++|++|++++++++.++++++++|++.+++.++.|+||+|+|+|+
T Consensus 403 ~f~~id~~ff~anl~Ki~~GGW~pl~ia~v~~~iM~tW~~G~~~~~~~~~~~~~~l~~f~~~l~~~~~~rvpG~avflt~ 482 (622)
T PRK10745 403 AFLCIDIPLFSANLDKLLSGGWLPLSLGLVMFIVMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYMSR 482 (622)
T ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCHHHHHHHhhhcCCCccCeEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999988887899999999999
Q ss_pred CCCCchhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHH
Q 011915 241 LVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVA 320 (475)
Q Consensus 241 ~~~~vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~yr~~~ryGy~d~~~~~~~~f~~~lv~ 320 (475)
..+++|+++.||+|||+++||++||+||+++|+|+||++||++++++++ |+|||++||||||+|+. ++.+
T Consensus 483 ~~~~vP~~l~h~lk~~~~lhe~~v~l~v~~~~~P~V~~~eR~~v~~l~~---g~~rv~~~yGf~e~~~i-~~~L------ 552 (622)
T PRK10745 483 AINVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSP---TFWRVVASYGWRETPNV-EEVF------ 552 (622)
T ss_pred CCCCCCHHHHHHhhcCCccceEEEEEEEEECCCcccCcccEEEEEEECC---CEEEEEEEecCCCCCCH-HHHH------
Confidence 9999999999999999999999999999999999999999999999996 79999999999999875 2221
Q ss_pred HHHHHHHHhhhhhHHhhccccCccccccccCCCCCCCCCCCccccccccccccccccCCCCCCccccCCCCCcccccCCC
Q 011915 321 SLEKFLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERRFDESGTSASEETTSALPSSVMALDED 400 (475)
Q Consensus 321 ~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (475)
+.... ++ .+ -+
T Consensus 553 ------~~~~~------~g--~~--------------~~----------------------------------------- 563 (622)
T PRK10745 553 ------HRCGL------EG--LS--------------CR----------------------------------------- 563 (622)
T ss_pred ------HHHHh------CC--CC--------------CC-----------------------------------------
Confidence 11100 00 00 00
Q ss_pred ccHHHHHHHHHHHHhCCcEEEeeecEEEecCCCC---hHHHHHHHHHHHHHhhhccCCcccccCCCCCeeEeeeEEEC
Q 011915 401 PSLEYELSALREAIDSGFTYLLAHGDVRAKKKSF---FLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 475 (475)
Q Consensus 401 ~~v~~El~~L~~A~eaGVvYIlG~~~v~ar~~Ss---~~KK~vIn~~Y~fLRkN~R~~~~~L~IPh~~LlEVGmvy~v 475 (475)
-..++|.+||+.+...++++ |-|| +|.||.||++++...+++|++|++|+|+.+|+
T Consensus 564 --------------~~~~s~fl~r~~l~~~~~~~m~~wr~~-----lF~~m~rna~~~~~~f~lP~~rvvelG~~v~i 622 (622)
T PRK10745 564 --------------MMETSFFMSHESLILGKRPWYLRLRGK-----LFLLLQRNALRAPDQFEIPPNRVIELGTQVEI 622 (622)
T ss_pred --------------ccceEEEEeeEEEEeCCCCCcHHHHHH-----HHHHHHHcCCCHHHHhCCCcccEEEEeeEEeC
Confidence 02679999999999888887 4444 89999999999999999999999999999885
No 7
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=100.00 E-value=3.6e-108 Score=872.98 Aligned_cols=303 Identities=43% Similarity=0.767 Sum_probs=300.3
Q ss_pred CeEeehhhhHHHHHHhhhhhhhhhccCCCcccCcccccccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCC
Q 011915 1 MQIAFTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFP 80 (475)
Q Consensus 1 Iq~aw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fP 80 (475)
||+||+++|||||+|||+||||||++||++.+||||+++|+|++||++++||+||||||||+|||+||+++||++|||||
T Consensus 232 Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~P 311 (534)
T PF02705_consen 232 IRIAWFFLVFPALLLNYFGQGALLLSHPEAVSNPFFLLIPEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFP 311 (534)
T ss_pred hhhhHHHHHHHHHHHHHccHHHHHHcCcchhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 011915 81 RLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPL 160 (475)
Q Consensus 81 r~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~ 160 (475)
|+||+|||++.+||||||+|||+||++|++++++||||++||+|||+||++||++||+|++++++.+|||+.++++++++
T Consensus 312 r~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~ 391 (534)
T PF02705_consen 312 RLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAVTGTMLITTILLFLVMRRVWKWPLWLALLFFL 391 (534)
T ss_pred ceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCChHHHHHhcCcCCCcccceEEEEeec
Q 011915 161 VFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNE 240 (475)
Q Consensus 161 ~f~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~ 240 (475)
+|+++|+.||+||+.||+||||+||++|++++++|++|++|+++++++++++++++++++++.++.++.|+||+|+|+|+
T Consensus 392 ~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~iM~tW~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~aVFlt~ 471 (534)
T PF02705_consen 392 FFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFTIMYTWRRGRKLLYEFERENKLPLDDFLELLEDQSIPRVPGTAVFLTR 471 (534)
T ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhhhCCCceecceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeec
Q 011915 241 LVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKD 305 (475)
Q Consensus 241 ~~~~vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~yr~~~ryGy~d 305 (475)
..+++|+++.||++||+++||+++|+|++++|+|+||++|||+++++++ +|+|||++||||||
T Consensus 472 ~~~~vP~~l~h~l~~~~vlhe~~v~l~v~~~~vP~V~~~~R~~v~~l~~--~g~~rv~~ryGf~e 534 (534)
T PF02705_consen 472 SPDGVPPALLHNLKHNKVLHERVVFLTVKTEPVPRVPPEERYEVERLGP--DGFYRVTLRYGFME 534 (534)
T ss_pred CCccCcHHHHHHHHhCCcccceEEEEEEEEeccCCCCCceEEEEEEecC--CCEEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999996 28999999999998
No 8
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-107 Score=851.32 Aligned_cols=380 Identities=31% Similarity=0.542 Sum_probs=354.8
Q ss_pred CeEeehhhhHHHHHHhhhhhhhhhccCCCcccCcccccccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCC
Q 011915 1 MQIAFTLVVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFP 80 (475)
Q Consensus 1 Iq~aw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fP 80 (475)
||.||+++|+|||+|||+||||++++||++..||||.++|+|++||+++|||+||||||||+|||+||+++||++||++|
T Consensus 248 I~~AWf~vv~P~L~LNY~GQGA~vL~~p~a~~npFF~~~P~~aliP~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lP 327 (627)
T COG3158 248 IRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLAPDWALIPLVILATAATVIASQAVISGAFSLTRQAIRLGYLP 327 (627)
T ss_pred HHHHHHHHHHHHHHHHHccccceeccCcccccCcHHHhChhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 011915 81 RLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPL 160 (475)
Q Consensus 81 r~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~ 160 (475)
|+||.|||+++.||||||.|||+|++++++++++||+|++||+|||+|||+||+|||+|++.+++..|||+++++.++.+
T Consensus 328 rm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiAVTgtM~iTt~L~~~~~~~~w~w~~~~~~~~~~ 407 (627)
T COG3158 328 RMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIAVTGTMVITTILLTVVMRKKWKWRKWLVALILI 407 (627)
T ss_pred ceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChheeehhHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCChHHHHHhcCcCCCcccceEEEEeec
Q 011915 161 VFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNE 240 (475)
Q Consensus 161 ~f~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~if~t~ 240 (475)
+|+++|..||+||+.|++||||+|+++|++++++|+||++|+++.+++.+++.+|++.+++.+++.++.|+||||+|+|+
T Consensus 408 ~f~~id~~Ff~AN~~Ki~~GGw~pllia~~i~~vM~tW~~g~~~l~~~~~~~~i~l~~fi~~l~~~~p~~v~gTAVfLt~ 487 (627)
T COG3158 408 VFLAIDILFFAANLLKIHDGGWLPLLLAAVIFFVMWTWKRGRQILFEKTRENGIPLDAFIASLEKHPPVRVPGTAVFLTR 487 (627)
T ss_pred HHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCCHHHHHHHHhhCCCcccCceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHhhhcCccceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccccChhhHHHHHHH
Q 011915 241 LVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHHVFEQLLVA 320 (475)
Q Consensus 241 ~~~~vP~~~~h~~~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~yr~~~ryGy~d~~~~~~~~f~~~lv~ 320 (475)
..+.+|.++.|++|||+++||++||+++++.++|+|+++||+.++++++ +++|++++|||||+|+. + +.
T Consensus 488 ~~~~vP~aLlhnlkhnkvlhe~nv~ltv~t~~~P~v~~~~r~~ve~l~~---~f~rV~l~~Gfme~pnv-p-~~------ 556 (627)
T COG3158 488 DPDVVPRALLHNLKHNKVLHERNVFLTVRTEDVPYVHPTDRVKVEQLSD---DFVRVVLHFGFMETPNV-P-RA------ 556 (627)
T ss_pred CCCcCcHHHHHHhhhhheeeeeEEEEEEEecCCCCCCccceeeeeeccC---ceEEEEEEeeccCCCCH-H-HH------
Confidence 9999999999999999999999999999999999999999999999998 69999999999999976 2 21
Q ss_pred HHHHHHHHhhhhhHHhhccccCccccccccCCCCCCCCCCCccccccccccccccccCCCCCCccccCCCCCcccccCCC
Q 011915 321 SLEKFLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERRFDESGTSASEETTSALPSSVMALDED 400 (475)
Q Consensus 321 ~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (475)
++.... ++ .+ |+
T Consensus 557 -----l~~~~~------~G--~~---------------------------------------------------f~---- 568 (627)
T COG3158 557 -----LRLCRK------KG--LK---------------------------------------------------FD---- 568 (627)
T ss_pred -----HHHHhh------cC--ce---------------------------------------------------ec----
Confidence 111110 00 00 00
Q ss_pred ccHHHHHHHHHHHHhCCcEEEeeecEEEecCCCChHHHHHHHHHHHHHhhhccCCcccccCCCCCeeEeeeEEEC
Q 011915 401 PSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 475 (475)
Q Consensus 401 ~~v~~El~~L~~A~eaGVvYIlG~~~v~ar~~Ss~~KK~vIn~~Y~fLRkN~R~~~~~L~IPh~~LlEVGmvy~v 475 (475)
-....|.+|++.+++++.|++.+ +-. ..|.+|.||.-++...++||.+|++|+|---||
T Consensus 569 --------------im~tsFfl~re~l~~~~~~g~~~-w~~-~lfi~l~r~aa~~~~~F~lp~~rvvElGtqveI 627 (627)
T COG3158 569 --------------IMETSFFLSRESLIASKNSGMPR-WRD-RLFIALARNAASPTDYFKLPPNRVVELGTQVEI 627 (627)
T ss_pred --------------ccceEEEEEeeeeecCCCCCchH-HHH-HHHHHHHHhcCCHHHhhCCCCCcEEEeeeeeeC
Confidence 01357999999999999999876 443 699999999999999999999999999965543
No 9
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=78.11 E-value=20 Score=36.48 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=53.2
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH----HHHHHHHHhHhcccCCcc---------HHHH
Q 011915 120 DIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGS----VELLYMSAVLSKIAEGGW---------LPLA 186 (475)
Q Consensus 120 ~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~----ie~~f~sa~l~K~~~GGW---------~pl~ 186 (475)
+-=..||.+|..+.++.++-++..+..+.+.+++.++++.++++. +|-..+|+.-.+-..+.. +.++
T Consensus 13 ~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvl 92 (301)
T PF14362_consen 13 NKYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVL 92 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 334578999999999999999888888899887777777666655 454444433222111111 2344
Q ss_pred HHHHhHhhhhhhhhhHHHH
Q 011915 187 FASVFLCVMYIWNYGSVLK 205 (475)
Q Consensus 187 ia~~~~~iM~~W~~G~~~~ 205 (475)
+|.++...+..+-+..++.
T Consensus 93 iaivIs~pl~l~iF~~eI~ 111 (301)
T PF14362_consen 93 IAIVISEPLELKIFEKEID 111 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555566665544
No 10
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=73.61 E-value=14 Score=35.79 Aligned_cols=21 Identities=5% Similarity=0.287 Sum_probs=16.8
Q ss_pred CccHHHHHHHHhHhhhhhhhh
Q 011915 180 GGWLPLAFASVFLCVMYIWNY 200 (475)
Q Consensus 180 GGW~pl~ia~~~~~iM~~W~~ 200 (475)
.+|+-+++|++.+.+-+-|++
T Consensus 179 ~~~~~iiig~i~~~~~~~lkk 199 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKK 199 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 389999999998888766653
No 11
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=60.86 E-value=42 Score=36.31 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=12.8
Q ss_pred hHhhhhhhHHHHHHHcCCCCcc
Q 011915 61 AMISATFSCIKQAMALGCFPRL 82 (475)
Q Consensus 61 A~Isg~FSl~~Qai~Lg~fPr~ 82 (475)
+.+.++=-++...-+-|.+|+.
T Consensus 335 ~~~~~~sR~l~a~ardg~lP~~ 356 (501)
T TIGR00911 335 GSLFSSSRLFFVGGREGHLPSL 356 (501)
T ss_pred HHHHHHHHHHHHHHhcCCccHH
Confidence 3333443444555578999973
No 12
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=54.23 E-value=12 Score=37.44 Aligned_cols=40 Identities=20% Similarity=0.644 Sum_probs=32.7
Q ss_pred HHHHHHhHhccc------CCccHHHHHHHHhHhhhhhhhhhHHHHH
Q 011915 167 LLYMSAVLSKIA------EGGWLPLAFASVFLCVMYIWNYGSVLKY 206 (475)
Q Consensus 167 ~~f~sa~l~K~~------~GGW~pl~ia~~~~~iM~~W~~G~~~~~ 206 (475)
.+||++-..-+. +|||..++.+.++..+..+|++--+.+.
T Consensus 242 iVFl~~W~~~~~d~~~~i~~G~isiv~Gliiv~iLii~N~kvEv~A 287 (304)
T COG4059 242 IVFLSSWVTTVFDPAVSIQGGWISIVAGLIIVLILIIWNRKVEVKA 287 (304)
T ss_pred hhhhhhhhhhhcCcccccccchhhhHHHHHHHHHHHHhcchhhhhh
Confidence 367777666666 7999999999999999999998666553
No 13
>PRK10655 potE putrescine transporter; Provisional
Probab=52.91 E-value=2.5e+02 Score=29.67 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=11.1
Q ss_pred hHHHHHHHcCCCCcc
Q 011915 68 SCIKQAMALGCFPRL 82 (475)
Q Consensus 68 Sl~~Qai~Lg~fPr~ 82 (475)
-+...+-+-|.+|+.
T Consensus 297 R~~~~~a~dg~lP~~ 311 (438)
T PRK10655 297 QVFKSSADEGYFPKI 311 (438)
T ss_pred HHHHHHhcCCchhHH
Confidence 456666788999975
No 14
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=52.49 E-value=2.1e+02 Score=30.38 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=33.1
Q ss_pred hhhHHHHHHHcCCCCcceEEecCCccCCceechHHHHHHHHHhh---heeEEe--CCchhHHhhhhhhhhHHHHHHH
Q 011915 66 TFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCV---VVVSIF--QSTTDIANAYGIAEVGVMLVSS 137 (475)
Q Consensus 66 ~FSl~~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNwlLmi~~l---~vv~~F--~~S~~l~~AYGiaV~~~M~iTT 137 (475)
.-....++-+-|.+|+. .-++++ +| .|..-.++...+. ..++.| ..++...++|..-++.+.+.+-
T Consensus 293 ~~r~~~~~ardG~lP~~-f~k~nk--~g---~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 363 (435)
T PRK10435 293 VGQAGVRAANDGNFPKV-YGEVDK--NG---IPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTM 363 (435)
T ss_pred HHHHHHHHHhCCCccHH-HHhhCc--CC---CCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHH
Confidence 33455567788999985 122232 23 7876644422111 111111 2223456778766665555544
No 15
>TIGR00930 2a30 K-Cl cotransporter.
Probab=49.91 E-value=5.4e+02 Score=31.02 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=29.9
Q ss_pred hhhHhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHh
Q 011915 59 SQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIAN 123 (475)
Q Consensus 59 SQA~Isg~FSl~~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~ 123 (475)
.-+.+.|+==+....-+-|.+|.++..-. .+++==.|..-.++..+..++.+.+.+-+.++.
T Consensus 402 ~la~l~~asRvl~AmArDg~lP~l~~fak---v~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~ 463 (953)
T TIGR00930 402 ALASLVSAPRLFQALCKDNIYPFLQFFGK---GYGKNGEPLRAYLLTAFIAEGFILIAELNTIAP 463 (953)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcchhhcc---cCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33445555555556667789996433211 111112566555544433333334444444443
No 16
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=49.45 E-value=11 Score=40.85 Aligned_cols=89 Identities=22% Similarity=0.385 Sum_probs=58.2
Q ss_pred HcCCCCcceEEecCCccCC----ceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHHHHH-----
Q 011915 75 ALGCFPRLKIIHTSRKRMG----QIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVML----- 145 (475)
Q Consensus 75 ~Lg~fPr~ki~hTS~~~~G----QIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~----- 145 (475)
+-|-.||+-+...=+...| |+|+|.+= +-.+-=|-.-=|-++-.+=-.++||.+..|||++...=.-
T Consensus 225 sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~L----iVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvS 300 (459)
T KOG3643|consen 225 STGNYSRLSLSFQLRRNIGFYILQTYIPSTL----IVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVS 300 (459)
T ss_pred ccccceeEEEEEEEEeeccEEEEeeecchhh----hhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCcc
Confidence 3788999999888888888 99999862 1111111222355666677889999999999998765221
Q ss_pred HHHhhchHHHHHHHHHHHH-HHH
Q 011915 146 LIWQTNLLLVLCFPLVFGS-VEL 167 (475)
Q Consensus 146 ~~w~~~~~~~~~~~~~f~~-ie~ 167 (475)
++.-.-+++..+|+.+|++ +|-
T Consensus 301 YVKAiDiYL~vCFvfVF~sLLEY 323 (459)
T KOG3643|consen 301 YVKAIDVYLGVCFVFVFLSLLEY 323 (459)
T ss_pred ceeeehhhhhHHHHHHHHHHHHH
Confidence 2233445566666666665 443
No 17
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=47.72 E-value=1.1e+02 Score=32.89 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=16.5
Q ss_pred ccHHHHHHHHhHhhhhhhhhh
Q 011915 181 GWLPLAFASVFLCVMYIWNYG 201 (475)
Q Consensus 181 GW~pl~ia~~~~~iM~~W~~G 201 (475)
-|.++++++++...+..|...
T Consensus 454 ny~~~~~~~~~~~~~~~~~~~ 474 (482)
T TIGR00907 454 NYAVVVFAGVLAISLVYWKYK 474 (482)
T ss_pred ChHhHHHHHHHHHHHHHheEe
Confidence 599999988888777777653
No 18
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=47.59 E-value=38 Score=32.78 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=38.4
Q ss_pred hhHHHHHHhhhhhhhhhccCCCcccCcccccccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q 011915 8 VVFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAM 74 (475)
Q Consensus 8 ~V~P~LlL~Y~GQ~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai 74 (475)
+=+|||+++|+= +.=+.||.+..| -++-+--+++|+..=++-|++ +|-.|+.+..-+
T Consensus 93 lP~PsLVIaYCl--~mqi~~~~~~~~-------~gMsIvcv~~Si~ti~~~~~s-~s~~~~ti~yIi 149 (189)
T PF05313_consen 93 LPFPSLVIAYCL--SMQIYNPGANNN-------VGMSIVCVIMSIITIIVNSVS-GSSGAYTISYII 149 (189)
T ss_pred cCccHHHHHHHH--HheeecCCCcce-------ehhHHHHHHHHHHHHHHHhhh-HhHHHHHHHHHH
Confidence 447999999983 222568887777 455555666666666677888 666666666544
No 19
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=44.81 E-value=2e+02 Score=30.50 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=13.7
Q ss_pred hHhhhhhhHHHHHHHcCCCCcc
Q 011915 61 AMISATFSCIKQAMALGCFPRL 82 (475)
Q Consensus 61 A~Isg~FSl~~Qai~Lg~fPr~ 82 (475)
+.+.++--++...-+-|.+||.
T Consensus 294 ~~~~~~sR~l~a~ardg~lP~~ 315 (442)
T TIGR00908 294 GIIYGYSRQIFALSRAGYLPES 315 (442)
T ss_pred HHHHHHHHHHHHHHhcCCccHH
Confidence 3344444555555678999975
No 20
>TIGR00909 2A0306 amino acid transporter.
Probab=44.78 E-value=1.2e+02 Score=31.68 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=38.2
Q ss_pred CcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchh
Q 011915 41 DSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTD 120 (475)
Q Consensus 41 ~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~ 120 (475)
++.-+-+.+.+.++..-+..+.+.+.==+....-+.|.+|+. --+++++ +| .|..--++..+...+...+.+.+.
T Consensus 276 ~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~-~~~~~~~-~~---~P~~a~~~~~~i~~~~~~~~~~~~ 350 (429)
T TIGR00909 276 GIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGS-LSKVHPK-TG---TPHMSIIIFSLTAALLASLVPLEG 350 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH-HHHcCCC-CC---CcHHHHHHHHHHHHHHHHHcCHHH
Confidence 344444444444444444444444444444455578999973 1222222 12 675433333222222233445555
Q ss_pred HHhhhhhhh
Q 011915 121 IANAYGIAE 129 (475)
Q Consensus 121 l~~AYGiaV 129 (475)
+.+..+++.
T Consensus 351 l~~~~~~~~ 359 (429)
T TIGR00909 351 LAELTSIGT 359 (429)
T ss_pred HHHHHHHHH
Confidence 555444333
No 21
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=43.02 E-value=1.3e+02 Score=31.71 Aligned_cols=137 Identities=16% Similarity=0.206 Sum_probs=83.6
Q ss_pred HhhhhhhHHHHHHHcCC-CCcceEEecCCccCCceechHHHHHHHHHhhheeEEeC-------CchhHHhhhhhhhhHHH
Q 011915 62 MISATFSCIKQAMALGC-FPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQ-------STTDIANAYGIAEVGVM 133 (475)
Q Consensus 62 ~Isg~FSl~~Qai~Lg~-fPr~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~-------~S~~l~~AYGiaV~~~M 133 (475)
+||-.|.-+.|..-+=. |||-| -+..|=.+.-+|+++..++-+..+ ..+....---.....-.
T Consensus 168 lis~~~l~l~qvqiv~rlF~R~~---------eK~~i~~vG~~L~i~~~il~ai~~f~~~~~~~~~~~~~lp~~~yl~~i 238 (348)
T PF08733_consen 168 LISNFFLQLAQVQIVIRLFPRQK---------EKRIIFWVGFILIILDQILWAINQFSYFDSDPNSFLDILPAFSYLFRI 238 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcccC---------cEEEEeeHHHHHHHHHHHHHHHHHhccCCCCccccccchHHHHHHHHH
Confidence 57778888888876544 48843 344466777788877666544433 22222222223334444
Q ss_pred HHHHHHHHHHHHHHHhh--------chHHHHHHHHHHHHHHHHHHHHhHhcccCCcc---HHHHHHHHhHhhhhhhhhhH
Q 011915 134 LVSSTLVTIVMLLIWQT--------NLLLVLCFPLVFGSVELLYMSAVLSKIAEGGW---LPLAFASVFLCVMYIWNYGS 202 (475)
Q Consensus 134 ~iTT~L~~~v~~~~w~~--------~~~~~~~~~~~f~~ie~~f~sa~l~K~~~GGW---~pl~ia~~~~~iM~~W~~G~ 202 (475)
.+-++...++..+.|.+ +.+..+++-++...+..+||..-+.+..-=|| ++-+..++..++-+=|-.-=
T Consensus 239 al~~~ya~~v~~y~~~k~k~~~~~~~~~~L~il~~~~i~l~~vffI~dis~~~v~~w~~~~~~~~~~~~tVivWEWi~ri 318 (348)
T PF08733_consen 239 ALSTLYAAWVIYYIISKKKYCFDYKQMIPLAILNLLLILLPVVFFILDISNWWVSGWSEYFRWVLYVAATVIVWEWINRI 318 (348)
T ss_pred HHHHHHHHHHHHHHHhhhhhheecchHHHHHHHHHHHHHHHHHhheeEccchhhhhHHHHHHHHHHHHHhhhHHHhhhHH
Confidence 55566666666666554 44556677777888889999888888888888 56666666555555554443
Q ss_pred HHHHH
Q 011915 203 VLKYR 207 (475)
Q Consensus 203 ~~~~~ 207 (475)
+++-+
T Consensus 319 e~lEr 323 (348)
T PF08733_consen 319 ERLER 323 (348)
T ss_pred HHHHH
Confidence 33333
No 22
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=39.77 E-value=1.9e+02 Score=31.11 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhHhhhhhhHHHHHHHcCCCCcc
Q 011915 51 AALAAMIASQAMISATFSCIKQAMALGCFPRL 82 (475)
Q Consensus 51 AtlAtIIASQA~Isg~FSl~~Qai~Lg~fPr~ 82 (475)
+.++.+-+..+.+.+.=-+....-+-|.+|+.
T Consensus 302 ~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~ 333 (469)
T PRK11049 302 VLTSAASSANSGVFSTSRMLFGLAQEGVAPKA 333 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33444444444444444455555578999964
No 23
>PF02660 G3P_acyltransf: Glycerol-3-phosphate acyltransferase; InterPro: IPR003811 This entry describes glycerol-3-phosphate acyltransferase. It catalyses the transfer of an acyl group from acyl-phosphate (acyl-PO4) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilises acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. ; GO: 0005886 plasma membrane
Probab=37.63 E-value=3.2e+02 Score=25.99 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=46.4
Q ss_pred eEEeCCchhHHhhhhhhhhHHHHHHHHH--HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhHhcccCCccHHHHHHH
Q 011915 112 VSIFQSTTDIANAYGIAEVGVMLVSSTL--VTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFAS 189 (475)
Q Consensus 112 v~~F~~S~~l~~AYGiaV~~~M~iTT~L--~~~v~~~~w~~~~~~~~~~~~~f~~ie~~f~sa~l~K~~~GGW~pl~ia~ 189 (475)
-+.||--..+|.+.|+-....-..+-+. ..++...++|....-.+..+.++ .+-.. + .+.+++..+.+
T Consensus 90 ~l~FkGGKGvAt~~G~ll~l~p~~~li~~~~~~~~~~~~r~~s~~s~~~~~~~-~~~~~-~--------~~~~~~~~~~~ 159 (178)
T PF02660_consen 90 FLKFKGGKGVATSLGVLLALSPWLALIALAVFLILLLITRYVSLASIIAFIIL-PILAW-L--------WGYSLAYVLFA 159 (178)
T ss_pred hhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHH-H--------HhCCHHHHHHH
Confidence 3569999999999998655544433332 22333333443322222211111 11111 1 66777777777
Q ss_pred HhHhhhhhhhhhHHHH
Q 011915 190 VFLCVMYIWNYGSVLK 205 (475)
Q Consensus 190 ~~~~iM~~W~~G~~~~ 205 (475)
++..++.+|++-+..+
T Consensus 160 ~~l~~li~~~h~~Ni~ 175 (178)
T PF02660_consen 160 IILALLIIYRHRENIK 175 (178)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777788888776655
No 24
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=37.52 E-value=11 Score=38.96 Aligned_cols=59 Identities=24% Similarity=0.457 Sum_probs=0.0
Q ss_pred HHHHHh--hchHHHHHHHHHHHHHHHHHHHHhHhcccCCccHHHHHH---HHhHhhhhhhhhhHHHH
Q 011915 144 MLLIWQ--TNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFA---SVFLCVMYIWNYGSVLK 205 (475)
Q Consensus 144 ~~~~w~--~~~~~~~~~~~~f~~ie~~f~sa~l~K~~~GGW~pl~ia---~~~~~iM~~W~~G~~~~ 205 (475)
|.+.|+ -++|-.+.|++.|+.-=++...|.+ .+=+||++++- .++|.-.++|-|-....
T Consensus 126 m~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~---L~qaWfT~L~dL~WL~LFlaiLIWlY~H~~~ 189 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFCLAFLLAIVLLIIAVL---LHQAWFTILVDLYWLLLFLAILIWLYVHDQR 189 (381)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455 3677777887777654444445554 46789999875 46777788998876655
No 25
>PRK15049 L-asparagine permease; Provisional
Probab=37.35 E-value=4e+02 Score=29.09 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=12.5
Q ss_pred hHhhhhhhHHHHHHHcCCCCcc
Q 011915 61 AMISATFSCIKQAMALGCFPRL 82 (475)
Q Consensus 61 A~Isg~FSl~~Qai~Lg~fPr~ 82 (475)
+.+.++--++...-+-|.+|+.
T Consensus 321 s~~~~~sR~l~a~Ardg~lP~~ 342 (499)
T PRK15049 321 SGLYCTGRILRSMAMGGSAPSF 342 (499)
T ss_pred HHHHHHHHHHHHHHhcCCcCHH
Confidence 3344444444445567899965
No 26
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=35.08 E-value=5.9e+02 Score=27.26 Aligned_cols=44 Identities=7% Similarity=-0.203 Sum_probs=29.5
Q ss_pred ccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCCcc
Q 011915 39 VPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRL 82 (475)
Q Consensus 39 ~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fPr~ 82 (475)
..++..+.+.+.+.+++.-+..+.+.++=-+..+.-+-|.+|+.
T Consensus 274 ~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~ 317 (468)
T TIGR03810 274 VGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKY 317 (468)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 34555555555566666666666666666667777788999976
No 27
>PRK14417 membrane protein; Provisional
Probab=34.03 E-value=2.7e+02 Score=28.01 Aligned_cols=101 Identities=11% Similarity=-0.040 Sum_probs=45.1
Q ss_pred EEeCCchhHHhhhhhhhhHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhHhcccCCccHHHHHHHHh
Q 011915 113 SIFQSTTDIANAYGIAEVGVMLVSSTLVT-IVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVF 191 (475)
Q Consensus 113 ~~F~~S~~l~~AYGiaV~~~M~iTT~L~~-~v~~~~w~~~~~~~~~~~~~f~~ie~~f~sa~l~K~~~GGW~pl~ia~~~ 191 (475)
+.||-...+|-+-|+.....-..+-+.+. ++...+.|....-.+. ..+...+ ..+++.... ..++-+.. ++..++
T Consensus 100 l~FKGGKGVAt~~Gvll~l~p~~~li~l~~~i~~~itr~vSL~Si~-~~~~~p~-~~~~~~g~~-~~~~~~~~-~~~~~~ 175 (232)
T PRK14417 100 LRFNGGRGIATSLGVALVMAPVPALIALSTALTFGFFKKMAPGVFL-GVGALPV-MSGYFHGFF-GVQEPQTV-TWGFIG 175 (232)
T ss_pred hCCcChhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHH-HHHHHHHHH-hhcCchHH-HHHHHH
Confidence 36999999999999865433222221111 1222223322221111 1111111 122221111 22233333 444678
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCChHHH
Q 011915 192 LCVMYIWNYGSVLKYRSEVREKISMDFL 219 (475)
Q Consensus 192 ~~iM~~W~~G~~~~~~~~~~~~~~~~~~ 219 (475)
++++.+||.=.....+ ..+.++..++
T Consensus 176 i~~lvi~rhl~~~~~~--~~~~~~~~~~ 201 (232)
T PRK14417 176 IFLIMIVRRLMAPDSE--YSSTVSKAEL 201 (232)
T ss_pred HHHHHHHHHhcCchhh--cccCchHHHH
Confidence 8888888875554432 3345555443
No 28
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=33.64 E-value=4.3e+02 Score=27.51 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=29.4
Q ss_pred CcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCCc
Q 011915 41 DSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPR 81 (475)
Q Consensus 41 ~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fPr 81 (475)
.+..+-+.+++.+++.-+..+.+.+.--+..+.-+-|++|+
T Consensus 284 ~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~ 324 (466)
T COG0531 284 NWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPK 324 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 35666666666666666667777777777777778899998
No 29
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=32.01 E-value=1.6e+02 Score=28.88 Aligned_cols=47 Identities=11% Similarity=0.287 Sum_probs=31.6
Q ss_pred HHHHHHHhhheeEEeCCchhHHhhh--hhhhhHHHHHHHHHHHHHHHHH
Q 011915 101 NWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI 147 (475)
Q Consensus 101 NwlLmi~~l~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~~~ 147 (475)
|-..+.-.+.++-..--|+++.||- |+||+.+|.+++.+..++-..+
T Consensus 14 ~N~vl~~~LGlCp~l~vs~~~~~a~gmGlAvtfV~~~s~~~~~~i~~~i 62 (200)
T TIGR01940 14 ENMALSFFLGMCTFLAVSKKVSTAFGLGVAVTFVLTITVPINNLIYTYI 62 (200)
T ss_pred hhHHHHHHHhcCchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555556677777776 6788888999888888776554
No 30
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=31.55 E-value=3.6e+02 Score=28.00 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=56.5
Q ss_pred cCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechHHHHHHHHHhh-hee--EEe-
Q 011915 40 PDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCV-VVV--SIF- 115 (475)
Q Consensus 40 P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNwlLmi~~l-~vv--~~F- 115 (475)
.++..+.+.+++.++..-+-.+.+.+.--++.+.-+-|.+|+ +..+++| +| .|..-.+++..+. ++. ..|
T Consensus 269 ~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~k--~~---~P~~a~~~~~~i~~i~~~~~~~~ 342 (426)
T PF13520_consen 269 GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPK-WFAKVNK--FG---TPYNAIILVAVISSILLLLFLFI 342 (426)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSG-GGGTTSS--SS---SCHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccchhhcchhhcccccccccchhh-hhhhccc--cC---CceeeehhhhHHHHHHHHHHHhh
Confidence 457788888888887777777777777777777888899994 2223332 22 3555444443333 222 223
Q ss_pred --CCchhHHhhhhhhhhHHHHHHHH
Q 011915 116 --QSTTDIANAYGIAEVGVMLVSST 138 (475)
Q Consensus 116 --~~S~~l~~AYGiaV~~~M~iTT~ 138 (475)
++-+.+.+.+.+......+++.+
T Consensus 343 ~~~~~~~l~~~~~~~~~~~~~~~~~ 367 (426)
T PF13520_consen 343 PQSSFDILVSLSSVGYLISYILVIL 367 (426)
T ss_dssp SSSHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456777777776666666633
No 31
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.41 E-value=43 Score=25.07 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=13.4
Q ss_pred hHhhhhhhhhhHHHHHHHHHhcCCChH
Q 011915 191 FLCVMYIWNYGSVLKYRSEVREKISMD 217 (475)
Q Consensus 191 ~~~iM~~W~~G~~~~~~~~~~~~~~~~ 217 (475)
++.....|.+-++++.+++...+++++
T Consensus 21 ~F~gi~~w~~~~~~k~~~e~aa~lpl~ 47 (49)
T PF05545_consen 21 FFIGIVIWAYRPRNKKRFEEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHcccchhhHHHHHccCcc
Confidence 333344455544445455555566654
No 32
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=30.17 E-value=2.1e+02 Score=27.98 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=32.4
Q ss_pred HHHHHHHhhheeEEeCCchhHHhhh--hhhhhHHHHHHHHHHHHHHHHH
Q 011915 101 NWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI 147 (475)
Q Consensus 101 NwlLmi~~l~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~~~ 147 (475)
|-..+.-.+.++-..--|+++.+|- |+||+.+|.+++.+.+++-..+
T Consensus 15 nN~vl~~~LG~Cp~laVs~~~~~a~gmGlav~fV~~~s~~~~~~i~~~i 63 (193)
T PRK05151 15 NNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASICAWLVNTYI 63 (193)
T ss_pred hhHHHHHHHhcCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555556677777776 6788899999999888876655
No 33
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=30.00 E-value=5.1e+02 Score=27.78 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=13.4
Q ss_pred ccHHHHHHHHhHhhhhhhh
Q 011915 181 GWLPLAFASVFLCVMYIWN 199 (475)
Q Consensus 181 GW~pl~ia~~~~~iM~~W~ 199 (475)
-|.+++++++++....-|-
T Consensus 434 ny~~~~~~~~~~~~~~~~~ 452 (474)
T TIGR03813 434 RYVGLLIGLAALFVTAPFL 452 (474)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3788888887776655554
No 34
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=29.95 E-value=2.2e+02 Score=27.55 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=47.5
Q ss_pred HHHHHHHhhheeEEeCCchhHHhhh--hhhhhHHHHHHHHHHHHHHHHH---Hhhc--hHHHHHHHHHHHHHHHHHH--H
Q 011915 101 NWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI---WQTN--LLLVLCFPLVFGSVELLYM--S 171 (475)
Q Consensus 101 NwlLmi~~l~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~~~---w~~~--~~~~~~~~~~f~~ie~~f~--s 171 (475)
|=..+.-.+.+.-...-|+++.+|- |+||+.+|++++.+...+=..+ .+.- ....+....+.-.+|...- +
T Consensus 15 ~N~vl~~~LGlcp~l~vs~~~~~a~~mGlav~~V~~~s~~~~~~l~~~il~p~~~lr~~~~ilviA~~v~~v~~~l~~~~ 94 (190)
T PF02508_consen 15 NNPVLVQFLGLCPFLAVSTSLENALGMGLAVTFVLTLSSVLISLLRNFILAPPSYLRIIVFILVIASLVQLVEMVLRAYF 94 (190)
T ss_pred hHHHHHHHHHhcchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3344444555555555666666665 6788888889999988877766 3332 2222222233333443321 1
Q ss_pred HhHhcccCCccHHHHHH
Q 011915 172 AVLSKIAEGGWLPLAFA 188 (475)
Q Consensus 172 a~l~K~~~GGW~pl~ia 188 (475)
=.++|- =|-|+||+..
T Consensus 95 p~l~~~-LgiylpLi~~ 110 (190)
T PF02508_consen 95 PSLYKA-LGIYLPLITV 110 (190)
T ss_pred HHHHHH-HHHhhhHHHH
Confidence 122222 3677887664
No 35
>PRK11387 S-methylmethionine transporter; Provisional
Probab=28.68 E-value=6.1e+02 Score=27.20 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=8.3
Q ss_pred HHHHHHcCCCCcc
Q 011915 70 IKQAMALGCFPRL 82 (475)
Q Consensus 70 ~~Qai~Lg~fPr~ 82 (475)
....-+-|.+|+.
T Consensus 316 l~a~ardg~lP~~ 328 (471)
T PRK11387 316 LWSLSNEGTLPAC 328 (471)
T ss_pred HHHHHhcCCcCHH
Confidence 3344467899975
No 36
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=27.87 E-value=2.1e+02 Score=31.62 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=13.7
Q ss_pred hhhhhhhhHHHHHHHHHHH
Q 011915 123 NAYGIAEVGVMLVSSTLVT 141 (475)
Q Consensus 123 ~AYGiaV~~~M~iTT~L~~ 141 (475)
..||+++...+++..++..
T Consensus 24 ~~YGl~ialGil~a~~l~~ 42 (460)
T PRK13108 24 RAYAVCVITGIIVALLIGD 42 (460)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6799988888887555443
No 37
>KOG3788 consensus Predicted divalent cation transporter [Inorganic ion transport and metabolism]
Probab=27.32 E-value=7.9e+02 Score=26.97 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=62.6
Q ss_pred HHHhhhHhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechHHHHHH-------------HHHh-hheeEEeC----C
Q 011915 56 MIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFL-------------MIMC-VVVVSIFQ----S 117 (475)
Q Consensus 56 IIASQA~Isg~FSl~~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNwlL-------------mi~~-l~vv~~F~----~ 117 (475)
.|.-||.|-|-- ..--|+.+|..| +|-.|++-.=.++ +... ++++.+=| |
T Consensus 113 LvqvQatvvgfl-a~i~a~~lg~~p-----------~~~~~~~~~llL~~SSv~ta~las~vl~~lmv~vIi~srk~~iN 180 (441)
T KOG3788|consen 113 LVQVQATVVGFL-AAIAAIALGIIP-----------EGDFDIEHSLLLCASSVATATLASLVLGILMVVVIIGSRKYDIN 180 (441)
T ss_pred HHHHHHHHHHHH-HHHHHHHhccCc-----------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccCCC
Confidence 355666665533 333467799999 6777777543221 1111 12222222 2
Q ss_pred chhHHhhhhhhhhHHHHHHHHHHHHHHHH--HHhhchHHHHHHHHHHHHHHHH-----HHHHhHhcccCCccHHHHHHHH
Q 011915 118 TTDIANAYGIAEVGVMLVSSTLVTIVMLL--IWQTNLLLVLCFPLVFGSVELL-----YMSAVLSKIAEGGWLPLAFASV 190 (475)
Q Consensus 118 S~~l~~AYGiaV~~~M~iTT~L~~~v~~~--~w~~~~~~~~~~~~~f~~ie~~-----f~sa~l~K~~~GGW~pl~ia~~ 190 (475)
-+|++.=-+ |-.++|+--++|.++--.. .-+.+.++..+..++|+++--+ +=.....++++-||+|+++|..
T Consensus 181 PDNIatPia-ASlGDl~Tl~~L~~~~~~~~~~~~~~~~l~~~v~~~flal~pvwi~ia~~~~~t~~Vlk~gw~pvi~Am~ 259 (441)
T KOG3788|consen 181 PDNIATPIA-ASLGDLLTLSSLAFFGSLFYNASDTSSYLTVLVVVFFLALLPVWIMIAAEDEGTRRVLKQGWEPVIIAMM 259 (441)
T ss_pred chhhcchhh-hhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHhHHHHhhhccCchhhhhHhcccHHHHHHHH
Confidence 344433221 2334555445554443322 2223444555555555554322 2234467788888888888877
Q ss_pred hHh
Q 011915 191 FLC 193 (475)
Q Consensus 191 ~~~ 193 (475)
+.+
T Consensus 260 ISs 262 (441)
T KOG3788|consen 260 ISS 262 (441)
T ss_pred HHc
Confidence 554
No 38
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=27.12 E-value=8e+02 Score=26.29 Aligned_cols=43 Identities=9% Similarity=-0.062 Sum_probs=24.6
Q ss_pred cCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCCcc
Q 011915 40 PDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRL 82 (475)
Q Consensus 40 P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fPr~ 82 (475)
.++...-+.+.+.+++.-+.-+.+.+.=-+....-+-|.+|+.
T Consensus 279 g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~ 321 (473)
T TIGR00905 279 GKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKI 321 (473)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH
Confidence 3444333333344444444455666665666666688999974
No 39
>PRK14419 membrane protein; Provisional
Probab=26.41 E-value=6.1e+02 Score=24.68 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=19.0
Q ss_pred eEEeCCchhHHhhhhhhhhHHHHHH
Q 011915 112 VSIFQSTTDIANAYGIAEVGVMLVS 136 (475)
Q Consensus 112 v~~F~~S~~l~~AYGiaV~~~M~iT 136 (475)
-+.||--...|.+-|+.....-..+
T Consensus 98 ~l~FkGGKGVAt~~G~ll~l~p~~~ 122 (199)
T PRK14419 98 WLGFKGGKAVATGLGMLLALSWPVG 122 (199)
T ss_pred hhCCcCccHHHHHHHHHHHHhHHHH
Confidence 3489999999999998877654433
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=25.72 E-value=7.6e+02 Score=26.35 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=16.6
Q ss_pred HHHHHhhhHhhhhhhHHHHHHHcCCCCcc
Q 011915 54 AAMIASQAMISATFSCIKQAMALGCFPRL 82 (475)
Q Consensus 54 AtIIASQA~Isg~FSl~~Qai~Lg~fPr~ 82 (475)
+..-+-.+.+.++=-++...-+-|.+|+.
T Consensus 300 s~~~~~~~~~~~~sR~l~a~ardg~lP~~ 328 (478)
T TIGR00913 300 SVLSAANSSLYASSRTLYALAHQGLAPKI 328 (478)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhCCcccHH
Confidence 33333344444444555566678999964
No 41
>PF01790 LGT: Prolipoprotein diacylglyceryl transferase; InterPro: IPR001640 Prolipoprotein diacylglyceryl transferase [] is the bacterial enzyme catalysing the first step in lipoprotein biogenesis. It transfers the n-acyl diglyceride group onto what will become the N-terminal cysteine of membrane lipoproteins. This enzyme is an integral membrane protein.; GO: 0016757 transferase activity, transferring glycosyl groups, 0009249 protein lipoylation, 0042158 lipoprotein biosynthetic process, 0016020 membrane
Probab=25.13 E-value=6.2e+02 Score=25.14 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=17.0
Q ss_pred HhcccCCcc--HHHHHHHHhHhhhhhhhhh
Q 011915 174 LSKIAEGGW--LPLAFASVFLCVMYIWNYG 201 (475)
Q Consensus 174 l~K~~~GGW--~pl~ia~~~~~iM~~W~~G 201 (475)
+.++.+||. ..=++++++....+.|+++
T Consensus 80 i~~i~~GGl~~~GGligg~l~~~~~~r~~~ 109 (256)
T PF01790_consen 80 ILAIWDGGLSFYGGLIGGILAGIWYARRRK 109 (256)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHhC
Confidence 457889994 4445555555555555544
No 42
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.09 E-value=15 Score=35.11 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=46.5
Q ss_pred HHHHHhCCcE-EEeeecEEEecCCCChHHHHHHHHHHHHH---hhhccCCcccccCCCCCeeEeee
Q 011915 410 LREAIDSGFT-YLLAHGDVRAKKKSFFLKKLVINYFYAFL---RRNCRAGAANMSVPHMNILQVGM 471 (475)
Q Consensus 410 L~~A~eaGVv-YIlG~~~v~ar~~Ss~~KK~vIn~~Y~fL---RkN~R~~~~~L~IPh~~LlEVGm 471 (475)
+++++++|.- +|..+ .+.++=.++..|+-+|++|.-. ++..|.....+++|.++.+-||-
T Consensus 55 ~~e~k~~gi~v~vvSN--n~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGD 118 (175)
T COG2179 55 LAELKEAGIKVVVVSN--NKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGD 118 (175)
T ss_pred HHHHHhcCCEEEEEeC--CCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcc
Confidence 5667778875 44444 5666667788889899888764 57888889999999999999984
No 43
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=24.32 E-value=3.8e+02 Score=27.55 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=24.2
Q ss_pred HHHHHHHhHhhhhhhhhhHHHHHHHHHhcCC
Q 011915 184 PLAFASVFLCVMYIWNYGSVLKYRSEVREKI 214 (475)
Q Consensus 184 pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~ 214 (475)
..++|+++++.|..|-..+.++++.+.++++
T Consensus 79 ~~lvAv~~l~~m~~Wm~~~~~~~~~~i~~~~ 109 (283)
T TIGR00145 79 FGVIAVVMLSYMGLWMLRMQRKWRVKIERQL 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999866677666665443
No 44
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=23.97 E-value=6.8e+02 Score=26.46 Aligned_cols=50 Identities=10% Similarity=0.020 Sum_probs=23.7
Q ss_pred hHHHHHHHcCCCCcc-eEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHh
Q 011915 68 SCIKQAMALGCFPRL-KIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIAN 123 (475)
Q Consensus 68 Sl~~Qai~Lg~fPr~-ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~ 123 (475)
-+..+.-+-|.+|+. .-+|... | .|..--++......+.+...+-+.+.+
T Consensus 305 R~~~a~ardg~lp~~~~~v~~~~---~---tP~~a~l~~~~~~~~~~~~~~~~~l~~ 355 (445)
T PRK11357 305 RLEYAMAKDNLFFKCFGHVHPKY---N---TPDVSIILQGALGIFFIFVSDLTSLLG 355 (445)
T ss_pred hHHHHHHhcCCchHHHHHhCCCC---C---CCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 344555577889965 2223221 2 566555543333322233344444444
No 45
>PF11086 DUF2878: Protein of unknown function (DUF2878); InterPro: IPR021306 This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.
Probab=23.94 E-value=3.1e+02 Score=25.46 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=56.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhHhcccCCccHHHHHHHHhHhhhhhhhh
Q 011915 121 IANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNY 200 (475)
Q Consensus 121 l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~~W~~ 200 (475)
++++.+...++.+++-++.. ...++....+++...++=..+|.+.....+..+++++++|+=+.+.=+..+.++++
T Consensus 19 lg~~~~~~~~~~~~~~~l~~----s~~~~~~~~~~~~~~~~G~~~D~~l~~~Gv~~f~~~~~~PlWL~~LW~~Fa~~l~~ 94 (152)
T PF11086_consen 19 LGAARALWWLALLLLLHLAL----SPQRRAELRLLLLAALLGILLDSLLLYLGVFSFPGSSLFPLWLILLWLAFATTLNH 94 (152)
T ss_pred HhhhhHHHHHHHHHHHHHHH----ccCchHHHHHHHHHHHHHHHHHHHHHHCCeeecCCCCCccHHHHHHHHHHHHHHHH
Confidence 45667777776663333322 22233333334444444456999999999999999999999999988888888887
Q ss_pred hHHHHH
Q 011915 201 GSVLKY 206 (475)
Q Consensus 201 G~~~~~ 206 (475)
.-+...
T Consensus 95 sl~wL~ 100 (152)
T PF11086_consen 95 SLAWLR 100 (152)
T ss_pred HHHHHH
Confidence 765543
No 46
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=23.94 E-value=2.5e+02 Score=27.61 Aligned_cols=47 Identities=9% Similarity=0.305 Sum_probs=31.3
Q ss_pred HHHHHHHhhheeEEeCCchhHHhhh--hhhhhHHHHHHHHHHHHHHHHH
Q 011915 101 NWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI 147 (475)
Q Consensus 101 NwlLmi~~l~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~~~ 147 (475)
|-..+.-.+.++-..--|+++.||- |+||+.+|.+++.+..++-..+
T Consensus 16 nN~vl~~~LGlCp~laVs~~~~~algmGlAvtfVl~~s~~~~~~i~~~i 64 (199)
T PRK12456 16 ENMALNFFLGMCTFLAISKKVETAFGLGLTVTALLAIATPLNNLIYTYI 64 (199)
T ss_pred hhHHHHHHHhcCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555566677777776 5778888888887777766543
No 47
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=23.69 E-value=2.7e+02 Score=25.28 Aligned_cols=53 Identities=13% Similarity=-0.060 Sum_probs=31.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-hh----chHHHHHHHHHHHHHHHHHHHHhHhccc
Q 011915 126 GIAEVGVMLVSSTLVTIVMLLIW-QT----NLLLVLCFPLVFGSVELLYMSAVLSKIA 178 (475)
Q Consensus 126 GiaV~~~M~iTT~L~~~v~~~~w-~~----~~~~~~~~~~~f~~ie~~f~sa~l~K~~ 178 (475)
|+=+..+|+-|.+..+......| .| ..++.+.+.++-++.|+.++...+.|+-
T Consensus 82 v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~e 139 (142)
T PF11712_consen 82 VFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKVE 139 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444445544444544555555 43 3444555555666779999998888864
No 48
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=23.33 E-value=46 Score=27.76 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=11.1
Q ss_pred HHHHHhhhccCCccc
Q 011915 444 FYAFLRRNCRAGAAN 458 (475)
Q Consensus 444 ~Y~fLRkN~R~~~~~ 458 (475)
=|.|||+|||.+.-.
T Consensus 25 ~~~~LRd~C~Ca~C~ 39 (89)
T PF06155_consen 25 PYEWLRDNCPCAECR 39 (89)
T ss_dssp EHHHHHHT-SSSSTC
T ss_pred CHHHHhccCCChhhc
Confidence 488999999987644
No 49
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.26 E-value=4.2e+02 Score=26.79 Aligned_cols=22 Identities=27% Similarity=0.040 Sum_probs=14.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH
Q 011915 123 NAYGIAEVGVMLVSSTLVTIVM 144 (475)
Q Consensus 123 ~AYGiaV~~~M~iTT~L~~~v~ 144 (475)
..||+.+...+++...+.....
T Consensus 20 ~~Ygl~~~lg~l~a~~~~~~~~ 41 (269)
T PRK12437 20 HWYGIIIGLGVLLGLWLATREG 41 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888777777666554433
No 50
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=23.24 E-value=9.4e+02 Score=25.77 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=19.7
Q ss_pred HHHHHHhhhHhhhhhhHHHHHHHcCCCCc---ceEEec
Q 011915 53 LAAMIASQAMISATFSCIKQAMALGCFPR---LKIIHT 87 (475)
Q Consensus 53 lAtIIASQA~Isg~FSl~~Qai~Lg~fPr---~ki~hT 87 (475)
++...+..+.+.++=-++...-+-|.+|. +.-+|.
T Consensus 307 i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~ 344 (475)
T TIGR03428 307 IAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHP 344 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCC
Confidence 33334444444444455555668899996 554454
No 51
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=23.18 E-value=2.5e+02 Score=28.43 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=30.2
Q ss_pred HHHHHHHhhheeEEeCCchhHHhhh--hhhhhHHHHHHHHHHHHHHH
Q 011915 101 NWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVML 145 (475)
Q Consensus 101 NwlLmi~~l~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~ 145 (475)
|=..+.-.+.++-..--|+++.+|. |+||+.+|.+++.+..++-.
T Consensus 22 nN~vl~~~LG~Cp~LaVS~~~~~a~gMGlAvtfVl~~S~~i~~~l~~ 68 (244)
T PRK01061 22 QNILLSNFLGMCSYLACSSRLSTANGLGMSVALVLTVTGSINWFVHA 68 (244)
T ss_pred hhHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555566677777776 67788888888888777643
No 52
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=22.87 E-value=3.9e+02 Score=24.91 Aligned_cols=12 Identities=17% Similarity=-0.009 Sum_probs=6.9
Q ss_pred CCChHHHHHhcC
Q 011915 213 KISMDFLLDLGS 224 (475)
Q Consensus 213 ~~~~~~~~~~~~ 224 (475)
..+++++...++
T Consensus 113 TT~~~~l~~~l~ 124 (198)
T TIGR02454 113 TTPFPELLSALR 124 (198)
T ss_pred cCCHHHHHHHHH
Confidence 456666666554
No 53
>PRK14409 membrane protein; Provisional
Probab=22.68 E-value=7.4e+02 Score=24.34 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=22.5
Q ss_pred EEeCCchhHHhhhhhhhhHHHH--HHHHHHHHHHHHHHhh
Q 011915 113 SIFQSTTDIANAYGIAEVGVML--VSSTLVTIVMLLIWQT 150 (475)
Q Consensus 113 ~~F~~S~~l~~AYGiaV~~~M~--iTT~L~~~v~~~~w~~ 150 (475)
+.||-....|.+-|+.....-. +..+++.++...++|.
T Consensus 99 l~FkGGKGvAt~~G~ll~l~p~~~l~~~~i~~i~~~itry 138 (205)
T PRK14409 99 LGFKGGKGVATTLGVFLVLTPIACVGAIVVFFVVYKIFKF 138 (205)
T ss_pred hcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3499999999988877665432 2333333444444444
No 54
>PRK10836 lysine transporter; Provisional
Probab=22.26 E-value=8.9e+02 Score=26.11 Aligned_cols=19 Identities=5% Similarity=0.179 Sum_probs=11.4
Q ss_pred ccHHHHHHHHhHhhhh-hhh
Q 011915 181 GWLPLAFASVFLCVMY-IWN 199 (475)
Q Consensus 181 GW~pl~ia~~~~~iM~-~W~ 199 (475)
|.+...++..++.+++ .|+
T Consensus 449 ~~~~~~~g~~~~~~~~~~~~ 468 (489)
T PRK10836 449 GVAATYIGIPLFLIIWFGYK 468 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3566677777666554 444
No 55
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=22.01 E-value=1.1e+02 Score=26.81 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=21.4
Q ss_pred EEEEEecCCCCcEEEEEEEEeeecccc
Q 011915 282 FLFRRVGPKDYHMFRCVTRYGYKDVRK 308 (475)
Q Consensus 282 ~~v~~~~~~~~~~yr~~~ryGy~d~~~ 308 (475)
+.+..+...+.|.|+|.+.+|.-|..+
T Consensus 76 L~I~nl~~sDsG~Y~C~V~~g~~~~~~ 102 (112)
T cd05900 76 LEITELRSNDSGTYRCEVMHGIEDNYD 102 (112)
T ss_pred EEEeecccccCEEEEEEEecCCCCcee
Confidence 456667677779999999999887754
No 56
>PRK00701 manganese transport protein MntH; Reviewed
Probab=21.56 E-value=4.2e+02 Score=28.81 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=26.0
Q ss_pred echHHHHHHHHHhhheeEEeCCchhHHhhhhhh
Q 011915 96 YIPVINWFLMIMCVVVVSIFQSTTDIANAYGIA 128 (475)
Q Consensus 96 YIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGia 128 (475)
|=+.++|++.+.+.+..+++.-.+-+|.|-|+-
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ 136 (439)
T PRK00701 104 YPRPVVWFLWIQAELAIMATDLAEVIGAAIALK 136 (439)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557789999888888888888777777776663
No 57
>PRK14397 membrane protein; Provisional
Probab=21.02 E-value=8.4e+02 Score=24.37 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=41.0
Q ss_pred eEEeCCchhHHhhhhhhhhHHH--HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhHhcccCCccHHHHHHH
Q 011915 112 VSIFQSTTDIANAYGIAEVGVM--LVSSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFAS 189 (475)
Q Consensus 112 v~~F~~S~~l~~AYGiaV~~~M--~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~ie~~f~sa~l~K~~~GGW~pl~ia~ 189 (475)
-+.||--..+|-+-|+-....- .+...+++++...++|.-..-++...+.+. + ..++. |.| +..+..
T Consensus 97 ~l~FkGGKGVAt~~Gvll~l~p~~~li~~~vf~~v~~itr~vSL~Si~a~~~~p-i-~~~~~--------~~~-~~~~~~ 165 (222)
T PRK14397 97 FLGFRGGKAVATTIGVFIPLAFWQLLLSGILCLLVIWRSGFVSLGSLTLVTALP-V-MLLIT--------GKW-KLIPLA 165 (222)
T ss_pred hhcCCCccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-H-HHHHH--------cch-HHHHHH
Confidence 4589999999998887765442 233333333444445543333322111111 1 11221 222 223334
Q ss_pred HhHhhhhhhhhhHHHH
Q 011915 190 VFLCVMYIWNYGSVLK 205 (475)
Q Consensus 190 ~~~~iM~~W~~G~~~~ 205 (475)
+++.++.+|+.-...+
T Consensus 166 ~~~a~lvi~rHr~NI~ 181 (222)
T PRK14397 166 LVVMALVYWSHRENIG 181 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566778887655444
No 58
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=20.26 E-value=3.5e+02 Score=26.39 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=26.5
Q ss_pred HHHhhheeEEeCCchhHHhhh--hhhhhHHHHHHHHHHHHHHH
Q 011915 105 MIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVML 145 (475)
Q Consensus 105 mi~~l~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~ 145 (475)
+.-.+.++-..--|+++.||- |+||+.+|.+++.+..++-.
T Consensus 18 l~~~LG~Cp~l~vs~~~~~a~gmGlav~~V~~~s~~~~~~i~~ 60 (190)
T TIGR01943 18 LVKFLGLCPFLGVSKKLETAIGMGLAVTFVMTLASVISWLVYN 60 (190)
T ss_pred HHHHHhcCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455566677766 67788888888888776654
Done!