Query 011915
Match_columns 475
No_of_seqs 214 out of 810
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 84.6 2 6.7E-05 43.3 7.6 62 69-137 298-359 (444)
2 3l1l_A Arginine/agmatine antip 65.6 20 0.00068 35.7 8.9 14 69-82 300-313 (445)
3 4djk_A Probable glutamate/gamm 63.4 66 0.0023 32.6 12.5 19 181-199 444-462 (511)
4 2l6p_A PHAC1, PHAC2 and PHAD g 30.3 21 0.00071 30.8 1.8 22 445-468 30-51 (124)
5 1nrp_R Receptor based peptide 25.6 24 0.00081 22.2 0.9 17 21-37 4-20 (26)
6 3luu_A Uncharacterized protein 24.8 24 0.00081 29.1 1.1 18 443-460 33-50 (101)
7 2l6n_A Uncharacterized protein 24.1 31 0.0011 30.2 1.8 16 444-459 36-51 (132)
8 2rdd_B UPF0092 membrane protei 23.6 1.1E+02 0.0037 20.8 4.2 19 180-198 1-19 (37)
9 3rhw_A Avermectin-sensitive gl 18.3 2.3E+02 0.0079 27.7 7.1 45 94-142 219-263 (347)
10 1nro_R Receptor based peptide 16.7 43 0.0015 21.2 0.8 16 22-37 5-20 (27)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=84.63 E-value=2 Score=43.30 Aligned_cols=62 Identities=8% Similarity=0.043 Sum_probs=30.2
Q ss_pred HHHHHHHcCCCCcceEEecCCccCCceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHH
Q 011915 69 CIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSS 137 (475)
Q Consensus 69 l~~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT 137 (475)
+....-+-|.+|+.= -++++ ++ |...-++......+...+-+-+.+.+.++++...+..++.
T Consensus 298 ~l~a~a~dg~lP~~f-~~~~~--~~----P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 359 (444)
T 3gia_A 298 VAYSLAKDGELPEFF-ERKVW--FK----STEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVI 359 (444)
T ss_dssp HHHHHHHHSSCCSSC-CTTSC--CS----CTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHH-hCCCC--CC----CcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 344455778999641 12221 22 5533332222222222234667777777776655555443
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=65.57 E-value=20 Score=35.73 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=9.3
Q ss_pred HHHHHHHcCCCCcc
Q 011915 69 CIKQAMALGCFPRL 82 (475)
Q Consensus 69 l~~Qai~Lg~fPr~ 82 (475)
+....-+-|.+|+.
T Consensus 300 ~~~~~a~dg~lP~~ 313 (445)
T 3l1l_A 300 TAKAAADDGLFPPI 313 (445)
T ss_dssp HHHHHHHTTSSCGG
T ss_pred HHHHHHhCCCCcHH
Confidence 33455677899964
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=63.42 E-value=66 Score=32.59 Aligned_cols=19 Identities=11% Similarity=0.182 Sum_probs=11.0
Q ss_pred ccHHHHHHHHhHhhhhhhh
Q 011915 181 GWLPLAFASVFLCVMYIWN 199 (475)
Q Consensus 181 GW~pl~ia~~~~~iM~~W~ 199 (475)
.|...++++++......|.
T Consensus 444 ~~~~~~~~~~~~~~~i~~~ 462 (511)
T 4djk_A 444 MYVELLVVSFLVVLALPFI 462 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777666666555444443
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=30.26 E-value=21 Score=30.84 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=15.4
Q ss_pred HHHHhhhccCCcccccCCCCCeeE
Q 011915 445 YAFLRRNCRAGAANMSVPHMNILQ 468 (475)
Q Consensus 445 Y~fLRkN~R~~~~~L~IPh~~LlE 468 (475)
|.|||.||+.+...-. .++++.
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 6899999999865443 555543
No 5
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=25.58 E-value=24 Score=22.19 Aligned_cols=17 Identities=18% Similarity=0.663 Sum_probs=14.7
Q ss_pred hhhhccCCCcccCcccc
Q 011915 21 AAYLMKYPDSANRIFYD 37 (475)
Q Consensus 21 ~A~ll~~p~~~~npFf~ 37 (475)
-+||++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999986
No 6
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=24.79 E-value=24 Score=29.09 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=10.9
Q ss_pred HHHHHHhhhccCCccccc
Q 011915 443 YFYAFLRRNCRAGAANMS 460 (475)
Q Consensus 443 ~~Y~fLRkN~R~~~~~L~ 460 (475)
+=|.|||.||+.+...-.
T Consensus 33 ~~~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 33 LTFEHLRVECPCAECKGH 50 (101)
T ss_dssp EEHHHHHHTCCCC-----
T ss_pred ECHHHHHhhCCChhhcCc
Confidence 358899999997765433
No 7
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=24.14 E-value=31 Score=30.16 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=12.5
Q ss_pred HHHHHhhhccCCcccc
Q 011915 444 FYAFLRRNCRAGAANM 459 (475)
Q Consensus 444 ~Y~fLRkN~R~~~~~L 459 (475)
=|.|||.||+.+...-
T Consensus 36 ~~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 36 SCELLRVYSPSAEVHG 51 (132)
T ss_dssp EHHHHHHSCSCSSSSS
T ss_pred CHHHHHhcCCCcccCC
Confidence 3689999999876543
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.57 E-value=1.1e+02 Score=20.80 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=10.6
Q ss_pred CccHHHHHHHHhHhhhhhh
Q 011915 180 GGWLPLAFASVFLCVMYIW 198 (475)
Q Consensus 180 GGW~pl~ia~~~~~iM~~W 198 (475)
|||..++.-++++.+||..
T Consensus 1 ~~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4666655555555666443
No 9
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=18.25 E-value=2.3e+02 Score=27.69 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=24.8
Q ss_pred ceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHH
Q 011915 94 QIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTI 142 (475)
Q Consensus 94 QIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~ 142 (475)
|+|+|.+ ++.++..+..+=..++.+.==+++++..+.+|+.+..+
T Consensus 219 ~l~iP~~----li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~ 263 (347)
T 3rhw_A 219 QLYIPSC----MLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGI 263 (347)
T ss_dssp HTHHHHH----HHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehhHH----HHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHH
Confidence 7899986 22222222223333333444457777777777776654
No 10
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=16.71 E-value=43 Score=21.18 Aligned_cols=16 Identities=19% Similarity=0.700 Sum_probs=13.7
Q ss_pred hhhccCCCcccCcccc
Q 011915 22 AYLMKYPDSANRIFYD 37 (475)
Q Consensus 22 A~ll~~p~~~~npFf~ 37 (475)
-||++||++.-.||+.
T Consensus 5 pfllrnpndkyepfwe 20 (27)
T 1nro_R 5 PFLLRNPNDKYEPFWE 20 (27)
T ss_pred cccccCCCcccCcccc
Confidence 4789999999999985
Done!