Query 011915
Match_columns 475
No_of_seqs 214 out of 810
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 17:55:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011915.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011915hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 41.7 11 0.00077 32.5 4.2 120 10-142 11-132 (173)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 26.5 16 0.0012 21.7 1.8 20 181-200 5-24 (27)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 22.4 16 0.0011 25.9 1.4 42 9-52 13-54 (57)
4 d1or7a2 a.177.1.1 (A:-1-111) S 16.4 35 0.0026 25.8 2.5 24 433-456 73-96 (113)
5 d1jb0i_ f.23.17.1 (I:) Subunit 11.2 8.4 0.00061 25.1 -2.3 19 95-113 13-31 (38)
6 d2a65a1 f.54.1.1 (A:5-513) Na( 10.6 1.9E+02 0.014 27.4 6.6 26 183-208 406-431 (509)
7 d1ug8a_ d.68.7.1 (A:) Poly(A)- 9.6 60 0.0043 24.7 1.8 20 311-330 9-28 (87)
8 d1iray2 b.1.1.4 (Y:102-204) Ty 8.6 81 0.0059 23.6 2.3 26 279-304 57-82 (103)
9 d1ppjd2 f.23.11.1 (D:196-241) 8.6 1.5E+02 0.011 19.7 3.4 24 125-148 9-32 (46)
10 d1f2qa2 b.1.1.4 (A:86-174) IgE 8.4 90 0.0066 22.2 2.4 30 278-307 47-76 (89)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=41.74 E-value=11 Score=32.48 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=72.7
Q ss_pred HHHHHHhhhhh--hhhhccCCCcccCcccccccCcchhHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHcCCCCcceEEec
Q 011915 10 FPCLLLAYMGQ--AAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHT 87 (475)
Q Consensus 10 ~P~LlL~Y~GQ--~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~fPr~ki~hT 87 (475)
+|-|++|.+|+ +|+++.+-|+.-+-+-. =..+.|+ ++-++.-++||+.. ++-+++++|-+-+-. .
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~ 77 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---W 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---H
Confidence 46677777776 46777655543332211 1255665 67788888999874 888999999543211 1
Q ss_pred CCccCCceechHHHHHHHHHhhheeEEeCCchhHHhhhhhhhhHHHHHHHHHHHH
Q 011915 88 SRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTI 142 (475)
Q Consensus 88 S~~~~GQIYIP~vNwlLmi~~l~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~ 142 (475)
-+...-++.+-.+|-+.+...+.....+.+...++-+=|++...+|++.+++=++
T Consensus 78 ~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 78 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223345677777877666655555556665566666666666666666555433
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=26.55 E-value=16 Score=21.69 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=16.0
Q ss_pred ccHHHHHHHHhHhhhhhhhh
Q 011915 181 GWLPLAFASVFLCVMYIWNY 200 (475)
Q Consensus 181 GW~pl~ia~~~~~iM~~W~~ 200 (475)
||+.|+.-+.-..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888888877888888854
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=22.41 E-value=16 Score=25.92 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=28.3
Q ss_pred hHHHHHHhhhhhhhhhccCCCcccCcccccccCcchhHHHHHHH
Q 011915 9 VFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAA 52 (475)
Q Consensus 9 V~P~LlL~Y~GQ~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAt 52 (475)
++-++++--++=+.|+..+.. +|.-|.++|+.++|-.+-+.|
T Consensus 13 ~~~~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 13 VLLVIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 344555555677778887654 334599999999997665543
No 4
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=16.39 E-value=35 Score=25.79 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHHHhhhccCCc
Q 011915 433 SFFLKKLVINYFYAFLRRNCRAGA 456 (475)
Q Consensus 433 Ss~~KK~vIn~~Y~fLRkN~R~~~ 456 (475)
.+|+.+++-|.+++++|++.|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 457999999999999999998654
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=11.18 E-value=8.4 Score=25.10 Aligned_cols=19 Identities=26% Similarity=0.738 Sum_probs=14.6
Q ss_pred eechHHHHHHHHHhhheeE
Q 011915 95 IYIPVINWFLMIMCVVVVS 113 (475)
Q Consensus 95 IYIP~vNwlLmi~~l~vv~ 113 (475)
|.||.+-|++-+.++.+..
T Consensus 13 I~iPvv~wl~p~vvMglLF 31 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 7899999998876665543
No 6
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=10.55 E-value=1.9e+02 Score=27.37 Aligned_cols=26 Identities=12% Similarity=0.497 Sum_probs=20.8
Q ss_pred HHHHHHHHhHhhhhhhhhhHHHHHHH
Q 011915 183 LPLAFASVFLCVMYIWNYGSVLKYRS 208 (475)
Q Consensus 183 ~pl~ia~~~~~iM~~W~~G~~~~~~~ 208 (475)
+.+.+.+.+-++...|.||.++..+.
T Consensus 406 ~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 406 IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 46666778888999999999887664
No 7
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.57 E-value=60 Score=24.75 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 011915 311 HHVFEQLLVASLEKFLRKEA 330 (475)
Q Consensus 311 ~~~f~~~lv~~L~~FI~~e~ 330 (475)
..+|.++++++|.+|+..++
T Consensus 9 ~k~fI~~v~erIe~fL~see 28 (87)
T d1ug8a_ 9 QKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHcCcc
Confidence 68999999999999998754
No 8
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.63 E-value=81 Score=23.55 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=20.6
Q ss_pred CceEEEEEecCCCCcEEEEEEEEeee
Q 011915 279 EERFLFRRVGPKDYHMFRCVTRYGYK 304 (475)
Q Consensus 279 ~eR~~v~~~~~~~~~~yr~~~ryGy~ 304 (475)
+..+.+..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 34567788887888999999988664
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.58 E-value=1.5e+02 Score=19.66 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=15.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 011915 125 YGIAEVGVMLVSSTLVTIVMLLIW 148 (475)
Q Consensus 125 YGiaV~~~M~iTT~L~~~v~~~~w 148 (475)
-|+-|.+.+.+-|.++..+-+.+|
T Consensus 9 mG~Kv~~~l~~l~~l~yy~KR~~W 32 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVYAMKRHKW 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466676666666666666666444
No 10
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.43 E-value=90 Score=22.24 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCCCcEEEEEEEEeeeccc
Q 011915 278 LEERFLFRRVGPKDYHMFRCVTRYGYKDVR 307 (475)
Q Consensus 278 ~~eR~~v~~~~~~~~~~yr~~~ryGy~d~~ 307 (475)
....+.+..+...+.|.|+|.+..|+.+..
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~ 76 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDYE 76 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCeE
Confidence 445688888887778999999998876543
Done!