BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011916
(475 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 337 bits (863), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/417 (42%), Positives = 254/417 (60%), Gaps = 33/417 (7%)
Query: 49 DRFIPCRSSSRLH--TFELIEKGSPVKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSPM 106
DR+IP RS++++ +F L ++ P ++ + + + + F +
Sbjct: 9 DRYIPHRSAAQMEVASFLLSKENQPEN---SQTPTKKEHQKAWALNLNGFDVEEAK---- 61
Query: 107 SPSKNMLRFKTDHSSGPNSPYSPSILGHDNGFS---SEASTP---PKLPRKVPKTPHKVL 160
+LR + P G+ N S+ +TP K R +P P ++L
Sbjct: 62 -----ILRLSGKPQNAPE--------GYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRIL 108
Query: 161 DAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTR 219
DAP +++D+YLNLVDWSS NVLAV L VYLW+AS+ + +L + PG+ + SV W +
Sbjct: 109 DAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK 168
Query: 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLR 279
EG+Y++VGT+ +VQ+WD Q KR+R H R G L+WNS ILSSGSR +I HD+R
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 228
Query: 280 VSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ----PTLRLTEHTA 335
V+ ++ L+GH EVCGL+W+ D R LASGGNDN + VW + P T+H
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288
Query: 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS 395
AVKA+AW P QS++LA+GGGT+DR IR WN +G L++VD SQVC++ WS + EL+S
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 348
Query: 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452
HG++QNQ+++WKYP+MAKV+ L GH+ RVL L SPDG T+ + A DETLR W F
Sbjct: 349 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 405
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 313 DNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370
DN + +W+ S L++ + + ++AW + + LA G +A+ ++ W+
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAE--VQLWDVQQQK 191
Query: 371 QL-NSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428
+L N ++V +L+W+ + S G+ + + V ++ V+TL+GHS V L
Sbjct: 192 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGL 247
Query: 429 ATSPDGQTIVTGAGDETLRFWNVFP 453
+PDG+ + +G D + W P
Sbjct: 248 RWAPDGRHLASGGNDNLVNVWPSAP 272
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 63/182 (34%), Gaps = 51/182 (28%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK----RVRTFGGHQTRAGVLAW--- 259
G VC ++W +G +++ G N V VW + ++TF HQ +AW
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 260 NSRILSSG--SRDRNI--------------------------------------LQHDLR 279
S +L++G + DR+I Q+ L
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 358
Query: 280 V----SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTA 335
+ + + +L GH S V L S D +AS D L +W P R A
Sbjct: 359 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKA 418
Query: 336 AV 337
+
Sbjct: 419 SA 420
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 163/321 (50%), Positives = 221/321 (68%), Gaps = 8/321 (2%)
Query: 140 SEASTP---PKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTAS 196
S+ +TP K R +P P ++LDAP +++D+YLNLVDWSS NVLAV L VYLW+AS
Sbjct: 74 SQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSAS 133
Query: 197 NSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAG 255
+ + +L + PG+ + SV W +EG+Y++VGT+ +VQ+WD Q KR+R H R G
Sbjct: 134 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG 193
Query: 256 VLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315
L+WNS ILSSGSR +I HD+RV+ ++ L+GH EVCGL+W+ D R LASGGNDN
Sbjct: 194 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253
Query: 316 LLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371
+ VW + P T+H AVKA+AW P QS++LA+GGGT+DR IR WN +G
Sbjct: 254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 313
Query: 372 LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS 431
L++VD SQVC++ WS + EL+S HG++QNQ+++WKYP+MAKV+ L GH+ RVL L S
Sbjct: 314 LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 373
Query: 432 PDGQTIVTGAGDETLRFWNVF 452
PDG T+ + A DETLR W F
Sbjct: 374 PDGATVASAAADETLRLWRCF 394
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 313 DNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370
DN + +W+ S L++ + + ++AW + + LA G +A+ ++ W+
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAE--VQLWDVQQQK 180
Query: 371 QL-NSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428
+L N ++V +L+W+ + S G+ + + V ++ V+TL+GHS V L
Sbjct: 181 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGL 236
Query: 429 ATSPDGQTIVTGAGDETLRFWNVFP 453
+PDG+ + +G D + W P
Sbjct: 237 RWAPDGRHLASGGNDNLVNVWPSAP 261
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 63/182 (34%), Gaps = 51/182 (28%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK----RVRTFGGHQTRAGVLAW--- 259
G VC ++W +G +++ G N V VW + ++TF HQ +AW
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 260 NSRILSSG--SRDRNI--------------------------------------LQHDLR 279
S +L++G + DR+I Q+ L
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 347
Query: 280 V----SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTA 335
+ + + +L GH S V L S D +AS D L +W P R A
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKA 407
Query: 336 AV 337
+
Sbjct: 408 SA 409
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 333 bits (853), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 160/311 (51%), Positives = 216/311 (69%), Gaps = 5/311 (1%)
Query: 147 KLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL 206
K R +P P ++LDAP +++D+YLNLVDWSS NVLAV L VYLW+AS+ + +L +
Sbjct: 4 KTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM 63
Query: 207 G-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILS 265
PG+ + SV W +EG+Y++VGT+ +VQ+WD Q KR+R H R G L+WNS ILS
Sbjct: 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS 123
Query: 266 SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW----NQ 321
SGSR +I HD+RV+ ++ L+GH EVCGL+W+ D R LASGGNDN + VW +
Sbjct: 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
Query: 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQV 381
P T+H AVKA+AW P QS++LA+GGGT+DR IR WN +G L++VD SQV
Sbjct: 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 243
Query: 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441
C++ WS + EL+S HG++QNQ+++WKYP+MAKV+ L GH+ RVL L SPDG T+ + A
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 303
Query: 442 GDETLRFWNVF 452
DETLR W F
Sbjct: 304 ADETLRLWRCF 314
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 313 DNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370
DN + +W+ S L++ + + ++AW + + LA G +A+ ++ W+
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAE--VQLWDVQQQK 100
Query: 371 QL-NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLA 429
+L N ++V +L+W+ + S G+ + + + V+TL+GHS V L
Sbjct: 101 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV---RVAEHHVATLSGHSQEVCGLR 157
Query: 430 TSPDGQTIVTGAGDETLRFWNVFP 453
+PDG+ + +G D + W P
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAP 181
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 304 bits (779), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 168/406 (41%), Positives = 228/406 (56%), Gaps = 29/406 (7%)
Query: 49 DRFIPCRSSSRLHTFELIEKGSPVKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSPMSP 108
DRFIP R ++ I P + A E G D + +P
Sbjct: 1 DRFIPSRPNTANAFVNSISSDVPFDYSESVA-------EACGFDLNTRVLAFKLDAP--E 51
Query: 109 SKNMLRFKTDHSSGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDD 168
+K + +T H N P P + TP K R+ TP +VLDAP + DD
Sbjct: 52 AKKPVDLRTQH----NRPQRPVV------------TPAK--RRFNTTPERVLDAPGIIDD 93
Query: 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT 228
+YLNL+DWS+ NV+AV L VY+W A + V+ L + V SV+W+ +GS++SVG
Sbjct: 94 YYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL 153
Query: 229 NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKL 288
G V ++D ++RT GHQ R G L+WN +LSSGSR I HD+R+++ I L
Sbjct: 154 GNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL 213
Query: 289 AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSS 348
GH SEVCGL W D +LASGGNDN + +W+ S P T H AAVKA+AW P QS+
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN 273
Query: 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408
LLA+GGGT D+ I FWN + G ++N+VD GSQV +L WS + E++STHG+ N + +W
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333
Query: 409 YPS--MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452
Y S + K + H RVLY A SPDG+ + T A DE L+FW V+
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 12/147 (8%)
Query: 313 DNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371
+ + VWN S L T+ + V ++ WS H S L+ G G + ++ + +
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKWS-HDGSFLSVGLGNG--LVDIYDVESQTK 168
Query: 372 LNSVDTGSQ--VCNLAWSKNVNELVSTHG-YSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428
L ++ G Q V L+W+++V S G + + + + ++ TL GHS V L
Sbjct: 169 LRTM-AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----QIGTLQGHSSEVCGL 223
Query: 429 ATSPDGQTIVTGAGDETLRFWNVFPSL 455
A DG + +G D ++ W+ S+
Sbjct: 224 AWRSDGLQLASGGNDNVVQIWDARSSI 250
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 141/276 (51%), Gaps = 18/276 (6%)
Query: 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238
Q + + V LW + + L G SV V ++ +G I+ ++ V++W+
Sbjct: 316 QTIASASDDKTVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWN- 372
Query: 239 TQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVC 296
+ ++T GH + +A+ + + ++S S D+ + + + + L GH S V
Sbjct: 373 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVW 430
Query: 297 GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356
G+ +S DD+ +AS +D + +WN++ Q LT H+++V+ +A+SP ++ ++ +
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASA---S 486
Query: 357 ADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK 414
D+ ++ WN NG L ++ TG S V +A+S + + S + +W
Sbjct: 487 DDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIAS--ASDDKTVKLWNRNGQL- 541
Query: 415 VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ TLTGHS V +A SPDGQTI + + D+T++ WN
Sbjct: 542 LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 139/276 (50%), Gaps = 18/276 (6%)
Query: 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238
Q + + V LW + + L G SV V ++ +G I+ ++ V++W+
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWN- 331
Query: 239 TQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVC 296
+ ++T GH + +A+ + + ++S S D+ + + + + L GH S V
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVR 389
Query: 297 GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356
G+ +S D + +AS +D + +WN++ Q LT H+++V +A+SP ++ ++ +
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDDQTIASA---S 445
Query: 357 ADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK 414
D+ ++ WN NG L ++ TG S V +A+S + + S + +W
Sbjct: 446 DDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIAS--ASDDKTVKLWNRNGQL- 500
Query: 415 VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ TLTGHS V +A SPDGQTI + + D+T++ WN
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 18/276 (6%)
Query: 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238
Q + + V LW + + L G SV V ++ +G I+ ++ V++W+
Sbjct: 152 QTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWN- 208
Query: 239 TQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVC 296
+ ++T GH + +A+ + + ++S S D+ + + + + L GH S V
Sbjct: 209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVN 266
Query: 297 GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356
G+ + D + +AS +D + +WN++ Q LT H+++V +A+SP ++ ++ +
Sbjct: 267 GVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASA---S 322
Query: 357 ADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK 414
D+ ++ WN NG L ++ TG S V +A+S + + S + +W
Sbjct: 323 DDKTVKLWN-RNGQHLQTL-TGHSSSVWGVAFSPDGQTIAS--ASDDKTVKLWNRNGQL- 377
Query: 415 VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ TLTGHS V +A SPDGQTI + + D+T++ WN
Sbjct: 378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 18/276 (6%)
Query: 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238
Q + + V LW + + L G SV V ++ +G I+ ++ V++W+
Sbjct: 29 QTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWN- 85
Query: 239 TQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVC 296
+ ++T GH + +A+ + + ++S S D+ + + + + L GH S V
Sbjct: 86 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVW 143
Query: 297 GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356
G+ +S D + +AS +D + +WN++ Q LT H+++V +A+SP ++ ++ +
Sbjct: 144 GVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASA---S 199
Query: 357 ADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK 414
D+ ++ WN NG L ++ TG S V +A+S + + S + +W
Sbjct: 200 DDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIAS--ASDDKTVKLWNRNGQL- 254
Query: 415 VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ TLTGHS V +A PDGQTI + + D+T++ WN
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 11/166 (6%)
Query: 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346
+L H S V G+ +S D + +AS +D + +WN++ Q LT H+++V +A+SP
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDG 69
Query: 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQI 404
++ ++ + D+ ++ WN NG L ++ TG S V +A+S + + S +
Sbjct: 70 QTIASA---SDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIAS--ASDDKTV 122
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+W + TLTGHS V +A SPDGQTI + + D+T++ WN
Sbjct: 123 KLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 113/270 (41%), Gaps = 35/270 (12%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G DSV + + G ++ + +++WD + +RT GH ++ N +
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 265 SSGSRDRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323
S SRD+ I + V + Y K GH+ V ++ + D +AS ND + VW +
Sbjct: 208 VSASRDKTIKMWE--VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 324 QQPTLRLTEHTAAVKAIAWSPHQ--SSLLASGG---------------GTADRCIRFWNT 366
++ L EH V+ I+W+P SS+ + G G+ D+ I+ W+
Sbjct: 266 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Query: 367 SNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY------SQNQIMVWKYPSMAKVSTLTG 420
S G L ++ V + W + V L + G + VW Y + + TL
Sbjct: 326 STGMCLMTL-----VGHDNWVRGV--LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 421 HSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
H V L +VTG+ D+T++ W
Sbjct: 379 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 20/172 (11%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L+GH+S V + + + S D + VW+ + L HT +V+ I++ H
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD-HSG 162
Query: 348 SLLASGGGTADRCIRFWN--------TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY 399
LLAS +AD I+ W+ T +GH N V +++ N + +VS
Sbjct: 163 KLLASC--SADMTIKLWDFQGFECIRTMHGHDHN-------VSSVSIMPNGDHIVS--AS 211
Query: 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
I +W+ + V T TGH V + + DG I + + D+T+R W V
Sbjct: 212 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/219 (17%), Positives = 86/219 (39%), Gaps = 25/219 (11%)
Query: 263 ILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322
++ S S D I D + D+ L GH V + + H + LAS D + +W+
Sbjct: 122 VMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVC 382
+ + H V +++ P+ ++++ + D+ I+ W G+ + + +
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMWEVQTGYCVKTFTGHREWV 237
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD--------- 433
+ L+++ Q + VW + + L H V ++ +P+
Sbjct: 238 RMVRPNQDGTLIASCSNDQT-VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 296
Query: 434 -----------GQTIVTGAGDETLRFWNVFPSLKAPALV 461
G +++G+ D+T++ W+V + LV
Sbjct: 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 124/278 (44%), Gaps = 45/278 (16%)
Query: 212 VCSVQWTREGSYISVGTN-LGQV-QVWDGTQCKRVRTFGGHQ-----------------T 252
VC V+++ +G Y++ G N QV +V DG+ R+
Sbjct: 67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 126
Query: 253 RAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN 312
R+ + + + L++G+ DR I D+ + + L GH+ ++ L + +L SG
Sbjct: 127 RSVCFSPDGKFLATGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 313 DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL 372
D + +W+ + Q +L L+ V +A SP +A+G + DR +R W++ G +
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAG--SLDRAVRVWDSETGFLV 242
Query: 373 NSVDTGSQ--------VCNLAWSKNVNELVSTHGYSQNQIMVW-----------KYPSMA 413
+D+ ++ V ++ ++++ +VS G + +W K P+
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 414 KVS-TLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
T GH VL +AT+ + + I++G+ D + FW+
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 140/350 (40%), Gaps = 57/350 (16%)
Query: 146 PKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASN-SKVTRL 203
P LPR++ HK LD S+ + V +S+ LA G ++ S+ S V RL
Sbjct: 47 PALPREIDVELHKSLDHTSV-----VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARL 101
Query: 204 CDLGPGDS----------------VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247
D + + SV ++ +G +++ G +++WD K V
Sbjct: 102 SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL 161
Query: 248 GGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLA-GHKSEVCGLKWS-HD 303
GH+ L + + L SGS DR + DLR C L + V + S D
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---CSLTLSIEDGVTTVAVSPGD 218
Query: 304 DRELASGGNDNQLLVWNQHSQQPTLRL-------TEHTAAVKAIAWSPHQSSLLASGGGT 356
+ +A+G D + VW+ + RL T H +V ++ ++ S+++ G+
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS---GS 275
Query: 357 ADRCIRFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVST----------HGYSQNQIM 405
DR ++ WN N + + T S C + + + + ++S G ++
Sbjct: 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335
Query: 406 VWKYPSMAKVSTLTGHSLRVLYLATS------PDGQTIVTGAGDETLRFW 449
W S + L GH V+ +A + P+ TG+GD R W
Sbjct: 336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 29/161 (18%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL 350
H S VC +K+S+D LA+G N V+ RL++ +AA K +L
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCN-KTTQVYRVSDGSLVARLSDDSAANK------DPENLN 115
Query: 351 ASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410
S ++D IR VC +S + L + G I +W
Sbjct: 116 TSSSPSSDLYIR-----------------SVC---FSPDGKFLAT--GAEDRLIRIWDIE 153
Query: 411 SMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+ V L GH + L P G +V+G+GD T+R W++
Sbjct: 154 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 22/243 (9%)
Query: 224 ISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVS 281
I G +++WD +CKR+ T GH L ++ R++ +GS D + D+ +
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILT--GHTGSVLCLQYDERVIITGSSDSTVRVWDVN-T 202
Query: 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-QQPTLR--LTEHTAAVK 338
+ + L H V L++++ + + D + VW+ S TLR L H AAV
Sbjct: 203 GEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260
Query: 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHG 398
+ + + S G DR I+ WNTS + +++ + +A + + LV + G
Sbjct: 261 VVDF---DDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKR--GIACLQYRDRLVVS-G 312
Query: 399 YSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL--K 456
S N I +W A + L GH L D + IV+GA D ++ W++ +L +
Sbjct: 313 SSDNTIRLWDIECGACLRVLEGHE--ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR 370
Query: 457 APA 459
APA
Sbjct: 371 APA 373
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 26/297 (8%)
Query: 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQV 233
+ + Q +++ + +W + + R+ G +C +Q+ + I G++ V
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC-LQY--DERVIITGSSDSTV 195
Query: 234 QVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICK--LAGH 291
+VWD + + T H L +N+ ++ + S+DR+I D+ +D + L GH
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351
++ V + + DD+ + S D + VWN + + L H + IA ++ L+
Sbjct: 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---RGIACLQYRDRLVV 310
Query: 352 SGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411
S G++D IR W+ G L ++ ++ N +VS G +I VW +
Sbjct: 311 S--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRIVS--GAYDGKIKVWDLVA 365
Query: 412 MAK---------VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459
+ TL HS RV L D IV+ + D+T+ W+ A A
Sbjct: 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 370 HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLA 429
H L + S+ + ++ G N I +W ++ LTGH+ VL L
Sbjct: 121 HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 180
Query: 430 TSPDGQTIVTGAGDETLRFWNV 451
D + I+TG+ D T+R W+V
Sbjct: 181 Y--DERVIITGSSDSTVRVWDV 200
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 110/275 (40%), Gaps = 34/275 (12%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW----NSRILS 265
D V ++ + SYI+ + +V++WD K V T+ H + + N +L+
Sbjct: 665 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 724
Query: 266 SGSRDRNILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323
+GS D + DL C+ + GH + V ++S DD LAS D L +W+ S
Sbjct: 725 TGSNDFFLKLWDLNQKE---CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 324 QQPTLRLT-------------EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370
+ + VK +WS ++ + + ++
Sbjct: 782 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK----VLLFDIHTSG 837
Query: 371 QLNSVDTGS----QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVL 426
L + TG Q C+ + ++ + SQ + +W S KV+ GH V
Sbjct: 838 LLAEIHTGHHSTIQYCDFSPYDHL----AVIALSQYCVELWNIDSRLKVADCRGHLSWVH 893
Query: 427 YLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461
+ SPDG + +T + D+T+R W K A+V
Sbjct: 894 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV 928
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 26/248 (10%)
Query: 206 LGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGV-LAWNSRIL 264
+G +V +Q+T +G + + +QVW+ V +T L +SR+L
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL 1066
Query: 265 SSGSRDRNILQHDL---RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321
S S D + ++ R+ D+ C H+ V S D + +S D +W+
Sbjct: 1067 S-WSFDGTVKVWNVITGRIERDFTC----HQGTVLSCAISSDATKFSSTSADKTAKIWSF 1121
Query: 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN-----SVD 376
P L H V+ A+S LLA+G + IR WN S+G L+ SV+
Sbjct: 1122 DLLSPLHELKGHNGCVRCSAFSL-DGILLATGDDNGE--IRIWNVSDGQLLHSCAPISVE 1178
Query: 377 TGSQ-----VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS 431
G+ V ++ +S + LVS GY + W + T + + + S
Sbjct: 1179 EGTATHGGWVTDVCFSPDSKTLVSAGGY----LKWWNVATGDSSQTFYTNGTNLKKIHVS 1234
Query: 432 PDGQTIVT 439
PD +T VT
Sbjct: 1235 PDFRTYVT 1242
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 10/165 (6%)
Query: 289 AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSS 348
GHK V ++++ D + L S D+ + VWN + L H VK
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRL 1065
Query: 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ--VCNLAWSKNVNELVSTHGYSQNQIMV 406
L S GT ++ WN G ++ T Q V + A S + + ST +I
Sbjct: 1066 LSWSFDGT----VKVWNVITG-RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI-- 1118
Query: 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
W + ++ + L GH+ V A S DG + TG + +R WNV
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 44/164 (26%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
+ H+ EV +S DD +A+ D ++ +W+ + + EH+ V ++ +
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407
LL + G D ++ W D + C
Sbjct: 720 HLLLATGSN-DFFLKLW-----------DLNQKECR------------------------ 743
Query: 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+T+ GH+ V + SPD + + + + D TLR W+V
Sbjct: 744 --------NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 41/170 (24%)
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377
+WN S+ H + V + +SP SS L + + D+ IR W T + NS
Sbjct: 873 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA---SDDQTIRVWETKKVCK-NSAIV 928
Query: 378 GSQVCNLAWSKNVNELVST-------------------------------------HGYS 400
Q ++ + +N +++ G
Sbjct: 929 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 988
Query: 401 QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
I + + P+ S+ GH V ++ + DG+T+++ + D ++ WN
Sbjct: 989 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 110/275 (40%), Gaps = 34/275 (12%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW----NSRILS 265
D V ++ + SYI+ + +V++WD K V T+ H + + N +L+
Sbjct: 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717
Query: 266 SGSRDRNILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323
+GS D + DL C+ + GH + V ++S DD LAS D L +W+ S
Sbjct: 718 TGSNDFFLKLWDLNQKE---CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 324 QQPTLRLT-------------EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370
+ + VK +WS ++ + + ++
Sbjct: 775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK----VLLFDIHTSG 830
Query: 371 QLNSVDTGS----QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVL 426
L + TG Q C+ + ++ + SQ + +W S KV+ GH V
Sbjct: 831 LLAEIHTGHHSTIQYCDFSPYDHL----AVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886
Query: 427 YLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461
+ SPDG + +T + D+T+R W K A+V
Sbjct: 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV 921
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 26/248 (10%)
Query: 206 LGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGV-LAWNSRIL 264
+G +V +Q+T +G + + +QVW+ V +T L +SR+L
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL 1059
Query: 265 SSGSRDRNILQHDL---RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321
S S D + ++ R+ D+ C H+ V S D + +S D +W+
Sbjct: 1060 S-WSFDGTVKVWNVITGRIERDFTC----HQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Query: 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN-----SVD 376
P L H V+ A+S LLA+G + IR WN S+G L+ SV+
Sbjct: 1115 DLLSPLHELKGHNGCVRCSAFSL-DGILLATGDDNGE--IRIWNVSDGQLLHSCAPISVE 1171
Query: 377 TGSQ-----VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS 431
G+ V ++ +S + LVS GY + W + T + + + S
Sbjct: 1172 EGTATHGGWVTDVCFSPDSKTLVSAGGY----LKWWNVATGDSSQTFYTNGTNLKKIHVS 1227
Query: 432 PDGQTIVT 439
PD +T VT
Sbjct: 1228 PDFRTYVT 1235
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 10/165 (6%)
Query: 289 AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSS 348
GHK V ++++ D + L S D+ + VWN + L H VK
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRL 1058
Query: 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ--VCNLAWSKNVNELVSTHGYSQNQIMV 406
L S GT ++ WN G ++ T Q V + A S + + ST +I
Sbjct: 1059 LSWSFDGT----VKVWNVITG-RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI-- 1111
Query: 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
W + ++ + L GH+ V A S DG + TG + +R WNV
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 44/164 (26%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
+ H+ EV +S DD +A+ D ++ +W+ + + EH+ V ++ +
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407
LL + G D ++ W D + C
Sbjct: 713 HLLLATGSN-DFFLKLW-----------DLNQKECR------------------------ 736
Query: 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+T+ GH+ V + SPD + + + + D TLR W+V
Sbjct: 737 --------NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 41/170 (24%)
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377
+WN S+ H + V + +SP SS L + + D+ IR W T + NS
Sbjct: 866 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA---SDDQTIRVWETKKVCK-NSAIV 921
Query: 378 GSQVCNLAWSKNVNELVST-------------------------------------HGYS 400
Q ++ + +N +++ G
Sbjct: 922 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 981
Query: 401 QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
I + + P+ S+ GH V ++ + DG+T+++ + D ++ WN
Sbjct: 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 105/253 (41%), Gaps = 19/253 (7%)
Query: 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSR 269
V V + +G + G+ G +++WD T R F GH +A++S R + SGSR
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 270 DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE--LASGGNDNQLLVWNQHSQQPT 327
D+ I + Y + H V +++S + + S G D + VWN + +
Sbjct: 149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208
Query: 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWS 387
HT + + SP SL ASGG D W+ + G L ++D G + L +S
Sbjct: 209 TNHIGHTGYLNTVTVSP-DGSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFS 265
Query: 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL---------RVLYLATSPDGQTIV 438
N L + G S I +W V L + + LA S DGQT+
Sbjct: 266 PNRYWLCAATGPS---IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 439 TGAGDETLRFWNV 451
G D +R W V
Sbjct: 323 AGYTDNLVRVWQV 335
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 263 ILSSGSRDRNILQHDL-RVSSDYIC---KLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318
++ S SRD+ I+ L R ++Y L GH V + S D + SG D L +
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG 378
W+ + T R HT V ++A+S +++ G+ D+ I+ WNT + D
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDKTIKLWNTLGVCKYTVQDES 169
Query: 379 SQ--VCNLAWSKN-VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435
V + +S N N ++ + G+ + + VW + + GH+ + + SPDG
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDK-LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228
Query: 436 TIVTGAGDETLRFWNV 451
+G D W++
Sbjct: 229 LCASGGKDGQAMLWDL 244
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 323 SQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ 380
++Q TLR L H V IA +P ++ S + D+ I W + + Q
Sbjct: 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSA--SRDKTIIMWKLTRDETNYGI---PQ 79
Query: 381 VCNLAWSKNVNELV-------STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433
S V+++V + G + +W + GH+ VL +A S D
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 434 GQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLW 467
+ IV+G+ D+T++ WN K + S W
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 105/253 (41%), Gaps = 19/253 (7%)
Query: 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSR 269
V V + +G + G+ G +++WD T R F GH +A++S R + SGSR
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 270 DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE--LASGGNDNQLLVWNQHSQQPT 327
D+ I + Y + H V +++S + + S G D + VWN + +
Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 185
Query: 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWS 387
HT + + SP SL ASGG D W+ + G L ++D G + L +S
Sbjct: 186 TNHIGHTGYLNTVTVSP-DGSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFS 242
Query: 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL---------RVLYLATSPDGQTIV 438
N L + G S I +W V L + + LA S DGQT+
Sbjct: 243 PNRYWLCAATGPS---IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 439 TGAGDETLRFWNV 451
G D +R W V
Sbjct: 300 AGYTDNLVRVWQV 312
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 263 ILSSGSRDRNILQHDL-RVSSDYIC---KLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318
++ S SRD+ I+ L R ++Y L GH V + S D + SG D L +
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG 378
W+ + T R HT V ++A+S +++ G+ D+ I+ WNT + D
Sbjct: 90 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDKTIKLWNTLGVCKYTVQDES 146
Query: 379 SQ--VCNLAWSKN-VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435
V + +S N N ++ + G+ + + VW + + GH+ + + SPDG
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDK-LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 205
Query: 436 TIVTGAGDETLRFWNV 451
+G D W++
Sbjct: 206 LCASGGKDGQAMLWDL 221
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 323 SQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ 380
++Q TLR L H V IA +P ++ S + D+ I W + + Q
Sbjct: 2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSA--SRDKTIIMWKLTRDETNYGI---PQ 56
Query: 381 VCNLAWSKNVNELV-------STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433
S V+++V + G + +W + GH+ VL +A S D
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 434 GQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLW 467
+ IV+G+ D+T++ WN K + S W
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 150
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 87 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 203 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 261 GSEDNLVYIWNL 272
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 53 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 111
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 227
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 288 VISTACHPTENIIASAALENDKTIKLW 314
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDS 83
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 84 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 137
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 216 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 268
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 316
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 113/265 (42%), Gaps = 31/265 (11%)
Query: 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR 269
V V + +G + G+ G++++WD R F GH +A+ ++R + S SR
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 270 DRNILQHDLRVSSDYICKLAG--HKSEVCGLKWSHDDRE--LASGGNDNQLLVWNQHSQQ 325
DR I + Y G H+ V +++S + + + S D + VWN + +
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLA 385
L HT V +A SP SL ASGG D + W+ + G +L S++ S + L
Sbjct: 553 LRSTLAGHTGYVSTVAVSP-DGSLCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALC 609
Query: 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL----------------TGHSLRVLY-- 427
+S N L + +++ I +W S + V L +V+Y
Sbjct: 610 FSPNRYWLCAA---TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666
Query: 428 -LATSPDGQTIVTGAGDETLRFWNV 451
L S DG T+ +G D +R W +
Sbjct: 667 SLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 13/219 (5%)
Query: 260 NSRILSSGSRDRNI----LQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315
N+ I+ S SRD++I L D + +L GH V + S D + SG D +
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 316 LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375
L +W+ + T R HT V ++A+S ++++ + DR I+ WNT G ++
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWNTL-GECKYTI 509
Query: 376 DTGSQ-----VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT 430
G + V + +S N + + VW + STL GH+ V +A
Sbjct: 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV 569
Query: 431 SPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSL 469
SPDG +G D + W++ K +L ++ + +L
Sbjct: 570 SPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHAL 608
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 87 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 203 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 261 GSEDNLVYIWNL 272
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 53 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 111
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 227
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 288 VISTACHPTENIIASAALENDKTIKLW 314
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 83
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 84 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 137
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 216 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 268
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 316
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 103 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR---VLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 219 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 277 GSEDNLVYIWNL 288
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 69 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 127
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 128 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 186
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 187 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 243
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 244 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 304 VISTACHPTENIIASAALENDKTIKLW 330
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDS 99
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 100 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 153
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 212
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 232 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 284
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 332
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 76
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 77 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 135
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 136 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 192
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 193 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 251 GSEDNLVYIWNL 262
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 43 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 101
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 102 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 160
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 161 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 217
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 218 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 277
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 278 VISTACHPTENIIASAALENDKTIKLW 304
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 73
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 74 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 127
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 186
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 205
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 206 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 258
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 259 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 306
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 105 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 163
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 164 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR---VLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 221 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 279 GSEDNLVYIWNL 290
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 71 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 129
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 130 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 188
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 189 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 245
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 246 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 305
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 306 VISTACHPTENIIASAALENDKTIKLW 332
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDS 101
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 102 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 155
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 214
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 174 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 233
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 234 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 286
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 287 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 334
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 79
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 80 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 138
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 139 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 195
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 196 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 254 GSEDNLVYIWNL 265
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 111/268 (41%), Gaps = 14/268 (5%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 46 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 104
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 105 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 163
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 164 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 220
Query: 367 SNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423
S G L + TG + C A G N + +W + V L GH+
Sbjct: 221 SKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 279
Query: 424 RVLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 280 VVISTACHPTENIIASAALENDKTIKLW 307
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 76
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 77 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 130
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 189
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 208
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 209 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 261
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 262 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 81 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 197 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 255 GSEDNLVYIWNL 266
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 47 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 105
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 164
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 221
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 282 VISTACHPTENIIASAALENDKTIKLW 308
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 77
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 78 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 131
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 210 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 262
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 84 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 200 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 258 GSEDNLVYIWNL 269
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 111/268 (41%), Gaps = 14/268 (5%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 50 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 108
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 224
Query: 367 SNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423
S G L + TG + C A G N + +W + V L GH+
Sbjct: 225 SKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Query: 424 RVLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLW 311
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ--VCNLA 385
L HT AV ++ +SP+ L AS +AD+ I+ W +G + +G + + ++A
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAAS---SADKLIKIWGAYDG-KFEKTISGHKLGISDVA 75
Query: 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDET 445
WS + N LVS + +W S + TL GHS V +P IV+G+ DE+
Sbjct: 76 WSSDSNLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 446 LRFWNV 451
+R W+V
Sbjct: 134 VRIWDV 139
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LA+ D + +W + + ++ H + +AWS S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 80
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 81 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 134
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 213 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 265
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 313
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 85
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 86 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 144
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 145 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 201
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 202 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 260 GSEDNLVYIWNL 271
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 52 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 110
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 111 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 169
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 170 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 226
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 227 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 286
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 287 VISTACHPTENIIASAALENDKTIKLW 313
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 82
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 83 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 136
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 195
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 214
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 215 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 267
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 268 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 315
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 87 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 203 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 261 GSEDNLVYIWNL 272
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 53 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 111
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 227
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 288 VISTACHPTENIIASAALENDKTIKLW 314
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 83
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 84 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 137
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 216 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 268
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 316
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 81
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 82 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 140
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 141 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 197
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 198 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 256 GSEDNLVYIWNL 267
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 48 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 106
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 107 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 165
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 166 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 222
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 223 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 282
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 283 VISTACHPTENIIASAALENDKTIKLW 309
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 78
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 79 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 132
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 191
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 210
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 211 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 263
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 264 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 311
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 81 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 197 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 255 GSEDNLVYIWNL 266
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 47 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 105
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 164
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 221
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 282 VISTACHPTENIIASAALENDKTIKLW 308
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 77
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 78 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 131
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 210 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 262
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 310
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 50 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 108
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYIC--KLAGHKSEVCGLKWSHDDR 305
H +N S ++ SGS D ++ D++ +C L H V + ++ D
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAVHFNRDGS 165
Query: 306 ELASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364
+ S D +W+ S Q L + V + +SP+ +LA+ T D ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 222
Query: 365 NTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH 421
+ S G L + TG + C A G N + +W + V L GH
Sbjct: 223 DYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 422 SLRVLYLATSPDGQTIVTGA--GDETLRFW 449
+ V+ A P I + A D+T++ W
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 113/252 (44%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 84 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 200 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 258 GSEDNMVYIWNL 269
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 80
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 81 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 134
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 213 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNMVY 265
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 313
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452
P+ A + TL GH+ V + SP+G+ + + + D+ ++ W +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 98 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 156
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 157 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 213
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 214 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 272 GSEDNLVYIWNL 283
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 12/267 (4%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 64 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 122
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 123 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 181
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 182 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 238
Query: 367 SNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
S G L + + C A G N + +W + V L GH+
Sbjct: 239 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 298
Query: 425 VLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ W
Sbjct: 299 VISTACHPTENIIASAALENDKTIKLW 325
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 94
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 95 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 148
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 207
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 226
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 227 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 279
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 280 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 327
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 113/252 (44%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 84 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 200 FVKFSPNGKYILA--ATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 258 GSEDNMVYIWNL 269
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 50 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 108
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYIC--KLAGHKSEVCGLKWSHDDR 305
H +N S ++ SGS D ++ D++ +C L H V + ++ D
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAVHFNRDGS 165
Query: 306 ELASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364
+ S D +W+ S Q L + V + +SP+ +LA+ T D ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNDLKLW 222
Query: 365 NTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH 421
+ S G L + TG + C A G N + +W + V L GH
Sbjct: 223 DYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 422 SLRVLYLATSPDGQTIVTGA--GDETLRFW 449
+ V+ A P I + A D+T++ W
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 80
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 81 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 134
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D ++ D + GHK+E V G KW + SG DN +
Sbjct: 213 ATLDNDLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNMVY 265
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ W +
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 313
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452
P+ A + TL GH+ V + SP+G+ + + + D+ ++ W +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 84 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 200 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 258 GSEDNLVYIWNL 269
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 111/268 (41%), Gaps = 14/268 (5%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 50 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 108
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 224
Query: 367 SNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423
S G L + TG + C A G N + +W + V L GH+
Sbjct: 225 SKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Query: 424 RVLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ +
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLF 311
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 80
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 81 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 134
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 213 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 265
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ + +
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLFKS 313
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G +V SV+++ G +++ + +++W K +T GH+ +AW +S +L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S S D+ + D+ S + L GH + V ++ + SG D + +W+ +
Sbjct: 84 VSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVC 382
+ L H+ V A+ ++ S +++S + D R W+T++G L ++ D V
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVT 439
+ +S N +++ N + +W Y + T TGH + + G+ IV+
Sbjct: 200 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 440 GAGDETLRFWNV 451
G+ D + WN+
Sbjct: 258 GSEDNLVYIWNL 269
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 111/268 (41%), Gaps = 14/268 (5%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
+ +W A + K + G + V W+ + + + ++ +++WD + K ++T G
Sbjct: 50 IKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 108
Query: 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307
H +N S ++ SGS D ++ D++ + + L H V + ++ D +
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 308 ASGGNDNQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
S D +W+ S Q L + V + +SP+ +LA+ T D ++ W+
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDY 224
Query: 367 SNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423
S G L + TG + C A G N + +W + V L GH+
Sbjct: 225 SKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Query: 424 RVLYLATSPDGQTIVTGA--GDETLRFW 449
V+ A P I + A D+T++ +
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLY 311
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
LAGH V +K+S + LAS D + +W + + ++ H + +AWS S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 80
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQI 404
+LL S + D+ ++ W+ S+G L ++ S CN + N +VS G +
Sbjct: 81 NLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS--GSFDESV 134
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+W + + TL HS V + + DG IV+ + D R W+ L+ D
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGV-LAWNSRILSS 266
D V +V + R+GS I + G ++WD QC + + + V + N + + +
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGGNDNQLL 317
+ D + D + GHK+E V G KW + SG DN +
Sbjct: 213 ATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVY 265
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+WN +++ +L HT V + A P + +++AS D+ I+ + +
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLYKS 313
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346
+L GH + V + S++ S D+ L +WN + Q + HT V ++A+SP
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ---VCNLAWSKNVNELVSTHGYSQNQ 403
+++ G D +R WN G ++++ G+ V + +S +++ V G N
Sbjct: 122 RQIVSGG---RDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 404 IMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+ VW + V+ L GH+ V + SPDG + D R W++
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 19/223 (8%)
Query: 240 QCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCG 297
QC+ F GH +A+ ++R + SG RD + +++ + H V
Sbjct: 100 QCQY--KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSC 157
Query: 298 LKWSH--DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGG 355
+++S D + SGG DN + VW+ + + L HT V ++ SP SL AS
Sbjct: 158 VRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASS-- 214
Query: 356 TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKN-------VNELVSTHGYSQNQIMVWK 408
D R W+ + G L+ + G+ + + +S N + + I+V
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVEL 274
Query: 409 YPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
P + + + + S DG T+ +G D +R W V
Sbjct: 275 APEHQGSKKIVPECVSIAW---SADGSTLYSGYTDNVIRVWGV 314
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 122/298 (40%), Gaps = 43/298 (14%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSR----ILS 265
D V ++ + +I+ + +V++W+ + V T+ H + + + +L+
Sbjct: 664 DEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLA 723
Query: 266 SGSRDRNILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323
+GS D + DL C+ + GH + V ++S DD+ LAS D L +W+ S
Sbjct: 724 TGSSDCFLKLWDLNQKE---CRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 324 ---------QQPTLRLTE----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370
+Q L L + VK +WS + ++ + I ++
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK----IFLFDIHTSG 836
Query: 371 QLNSVDTGS----QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVL 426
L + TG Q C+ + ++ + SQ + +W S +KV+ GH V
Sbjct: 837 LLGEIHTGHHSTIQYCDFSPQNHL----AVVALSQYCVELWNTDSRSKVADCRGHLSWVH 892
Query: 427 YLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV---------KDTSLWSLGRTHIR 475
+ SPDG + +T + D+T+R W K A++ ++ + L HIR
Sbjct: 893 GVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIR 950
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 29/244 (11%)
Query: 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ--TRAGVLAWNSRILS--- 265
+V +Q+T + + ++ ++QVW+ Q + GHQ + L NSR+LS
Sbjct: 1011 TVWHIQFTADEKTLISSSDDAEIQVWNW-QLDKCIFLRGHQETVKDFRLLKNSRLLSWSF 1069
Query: 266 -SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
+ NI+ + D++C H+ V SHD + +S D +W+
Sbjct: 1070 DGTVKVWNIITGN--KEKDFVC----HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN---------SV 375
P L H V+ A+S S+LLA+G + IR WN SNG L+ +
Sbjct: 1124 LPLHELRGHNGCVRCSAFSV-DSTLLATGDDNGE--IRIWNVSNGELLHLCAPLSEEGAA 1180
Query: 376 DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435
G V +L +S + L+S GY I W + T + + + SPD +
Sbjct: 1181 THGGWVTDLCFSPDGKMLISAGGY----IKWWNVVTGESSQTFYTNGTNLKKIHVSPDFK 1236
Query: 436 TIVT 439
T VT
Sbjct: 1237 TYVT 1240
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 8/162 (4%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL 350
HK V ++++ D++ L S +D ++ VWN + + L H VK + L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDK-CIFLRGHQETVKDFRLLKNSRLLS 1066
Query: 351 ASGGGTADRCIRFWNTSNGH-QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409
S GT ++ WN G+ + + V V + S + + ST +I W +
Sbjct: 1067 WSFDGT----VKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKI--WSF 1120
Query: 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+ + L GH+ V A S D + TG + +R WNV
Sbjct: 1121 DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 44/166 (26%)
Query: 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP 344
+ ++ H+ EV +S DDR +A+ D ++ +WN + + EH+ V
Sbjct: 656 LLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQV------- 708
Query: 345 HQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQI 404
C F N+S+ H L + TGS C L
Sbjct: 709 --------------NCCHFTNSSH-HLL--LATGSSDCFLK------------------- 732
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+W +T+ GH+ V + SPD + + + + D TL+ W+
Sbjct: 733 -LWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 290 GHKSEVCGLKW--SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
GH ++V L S SGG D + +VW+ S Q H + V ++ + P
Sbjct: 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253
Query: 348 SLLASGGGTADRCIRFWNTSNGHQL-----NSVDTGSQVCNLAWSKNVNELVSTHGYSQN 402
+ G+ D R ++ ++ S+ G+ + + S + L + GY+
Sbjct: 254 AF---ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL--LFA--GYNDY 306
Query: 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFW 449
I VW ++VS L GH RV L SPDG +G+ D TLR W
Sbjct: 307 TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 10/171 (5%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L GH ++V + W D R + S D +++VW+ + +T V A A++P S
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP--S 117
Query: 348 SLLASGGGTADRCIRF-----WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN 402
+ GG ++C + N + + SV + + N + + T
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT-ASGDG 176
Query: 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPD--GQTIVTGAGDETLRFWNV 451
+W S + + GH VL L +P G T V+G D+ W++
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 21/239 (8%)
Query: 242 KRVRTFGGHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGL 298
K RT GH + + W RI+SS + I+ + ++ + C
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA- 113
Query: 299 KWSHDDRELASGGNDNQLLVW------NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL-A 351
++ +A GG DN+ V+ N++ + HT + A +++ +L A
Sbjct: 114 -YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 352 SGGGTADRCIRFWNTSNGHQLNSVDT-GSQV-C-NLAWSKNVNELVSTHGYSQNQIMVWK 408
SG GT W+ +G L S G+ V C +LA S+ N VS G + MVW
Sbjct: 173 SGDGTC----ALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS--GGCDKKAMVWD 226
Query: 409 YPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLW 467
S V H V + P G +G+ D T R +++ + K++ ++
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 214 SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVL--AWNSRILSSGSRDR 271
SV ++ G + G N + VWD + RV GH+ R L + + SGS D
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD- 347
Query: 272 NILQHDLRV 280
H LRV
Sbjct: 348 ----HTLRV 352
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 17/213 (7%)
Query: 252 TRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLA---GHKSEVCGLKWSHDDRE 306
+R LAWN +L+S DR I S +ICK GH+ V + WS
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS-WICKSVLSEGHQRTVRKVAWSPCGNY 75
Query: 307 LASGGNDNQLLVW--NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364
LAS D +W NQ + L H VK++AW+P +LLA+ + D+ + W
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATC--SRDKSVWVW 132
Query: 365 NTSNGHQLNSVDT----GSQVCNLAWSKNVNELVSTHGYSQN-QIMVWKYPSMAKVSTLT 419
+ V V ++ W + EL+++ Y ++ + +TL
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLE 191
Query: 420 GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452
GH V LA P GQ + + + D T+R W +
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 285 ICKLAG-HKSEVCGLKWSHDDRELASGGNDNQLLVW----NQHSQQPTLRLTEH-----T 334
IC L+G H + + W LA+ D+ + V+ N QQPT LT H +
Sbjct: 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS 303
Query: 335 AAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365
V +AW+P + LLAS + + FW
Sbjct: 304 QDVNCVAWNPKEPGLLASCSDDGE--VAFWK 332
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 21/210 (10%)
Query: 260 NSRILSSGSRDRNILQHDL--RVSSDYIC----KLAGHKSEVCGLKWSHDDRELASGGND 313
+S +L SGSRD+ ++ L + Y L GH V L S ++ S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 314 NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT------S 367
L +W+ + R H + V ++A+SP +L++G A+R I+ WN S
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG---AEREIKLWNILGECKFS 154
Query: 368 NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN-----QIMVWKYPSMAKVSTLTGHS 422
+ + N D S V K+ N++ Y + ++ VW + T H
Sbjct: 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY-TFKAHE 213
Query: 423 LRVLYLATSPDGQTIVTGAGDETLRFWNVF 452
V +L+ SP+G+ I TG D+ L W++
Sbjct: 214 SNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 17/205 (8%)
Query: 266 SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN--QHS 323
S S D+ + DLR + Y + GH+SEV + +S D+R++ S G + ++ +WN
Sbjct: 93 SSSWDKTLRLWDLRTGTTY-KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
Query: 324 QQPTLRLTEHTAAVKAIAWSPHQSS---------LLASGGGTADRCIRFWNTSNGHQLNS 374
+ + H+ V + +SP S AS G D ++ WNT+ +
Sbjct: 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW--DGRLKVWNTNFQIRYTF 209
Query: 375 VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434
S V +L+ S N + ++T G ++++W ++ + +A +P
Sbjct: 210 KAHESNVNHLSISPN-GKYIATGG-KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKL 267
Query: 435 QTIVTGAGDETLRFWNVFPSLKAPA 459
Q + G D+ ++ +N+ KAP
Sbjct: 268 QWVAVGT-DQGVKIFNLMTQSKAPV 291
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 404 IMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463
+ +W + GH V +A SPD + I++ + ++ WN+ K + K+
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 24/253 (9%)
Query: 218 TREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSR--ILSSGSRDRNILQ 275
T +G+Y + +++WD + + F GH++ + + + ++ SGSRD+ I
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 276 HDLRVSSDYICKLAGHKSEVCGL------KWSHDDRELASGGNDNQLLVWNQHSQQPTLR 329
++ + L GH V + K D + S GND + WN + Q
Sbjct: 134 WTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKN 389
H + + + SP +L+AS G D I WN + + ++ +V +LA+S N
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTL----TGHSL----RVLYLATSPDGQTIVTGA 441
L + + I V+ V L G+S + LA S DGQT+ G
Sbjct: 249 RYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGY 305
Query: 442 GDETLRFWNVFPS 454
D +R W V +
Sbjct: 306 TDNVIRVWQVMTA 318
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 13/198 (6%)
Query: 263 ILSSGSRDRNILQHDLRVSSDY----ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318
+L S SRD+ ++ L + GH V + D S D L +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--- 375
W+ + + R H + V ++ S +++ G+ D+ I+ W T G L ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGH 147
Query: 376 -DTGSQVCNLAWSKNVNELVSTHGYSQNQIM-VWKYPSMAKVSTLTGHSLRVLYLATSPD 433
D SQV + K ++ V+ ++++ W + GH+ + L SPD
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 434 GQTIVTGAGDETLRFWNV 451
G I + D + WN+
Sbjct: 208 GTLIASAGKDGEIMLWNL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 24/253 (9%)
Query: 218 TREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSR--ILSSGSRDRNILQ 275
T +G+Y + +++WD + + F GH++ + + + ++ SGSRD+ I
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 276 HDLRVSSDYICKLAGHKSEVCGL------KWSHDDRELASGGNDNQLLVWNQHSQQPTLR 329
++ + L GH V + K D + S GND + WN + Q
Sbjct: 134 WTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKN 389
H + + + SP +L+AS G D I WN + + ++ +V +LA+S N
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTL----TGHSL----RVLYLATSPDGQTIVTGA 441
L + + I V+ V L G+S + LA S DGQT+ G
Sbjct: 249 RYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
Query: 442 GDETLRFWNVFPS 454
D +R W V +
Sbjct: 306 TDNVIRVWQVMTA 318
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 13/198 (6%)
Query: 263 ILSSGSRDRNILQHDLRVSSDY----ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318
+L S SRD+ ++ L + GH V + D S D L +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--- 375
W+ + + R H + V ++ S +++ G+ D+ I+ W T G L ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGH 147
Query: 376 -DTGSQVCNLAWSKNVNELVSTHGYSQNQIM-VWKYPSMAKVSTLTGHSLRVLYLATSPD 433
D SQV + K ++ V+ ++++ W + GH+ + L SPD
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 434 GQTIVTGAGDETLRFWNV 451
G I + D + WN+
Sbjct: 208 GTLIASAGKDGEIMLWNL 225
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 24/253 (9%)
Query: 218 TREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSR--ILSSGSRDRNILQ 275
T +G+Y + +++WD + + F GH++ + + + ++ SGSRD+ I
Sbjct: 68 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 276 HDLRVSSDYICKLAGHKSEVCGL------KWSHDDRELASGGNDNQLLVWNQHSQQPTLR 329
++ + L GH V + K D + S GND + WN + Q
Sbjct: 128 WTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKN 389
H + + + SP +L+AS G D I WN + + ++ +V +LA+S N
Sbjct: 186 FIGHNSNINTLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 242
Query: 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTL----TGHSL----RVLYLATSPDGQTIVTGA 441
L + + I V+ V L G+S + LA S DGQT+ G
Sbjct: 243 RYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 299
Query: 442 GDETLRFWNVFPS 454
D +R W V +
Sbjct: 300 TDNVIRVWQVMTA 312
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 13/198 (6%)
Query: 263 ILSSGSRDRNILQHDLRVSSDY----ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318
+L S SRD+ ++ L + GH V + D S D L +
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--- 375
W+ + + R H + V ++ S +++ G+ D+ I+ W T G L ++
Sbjct: 86 WDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGH 141
Query: 376 -DTGSQVCNLAWSKNVNELVSTHGYSQNQIM-VWKYPSMAKVSTLTGHSLRVLYLATSPD 433
D SQV + K ++ V+ ++++ W + GH+ + L SPD
Sbjct: 142 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 201
Query: 434 GQTIVTGAGDETLRFWNV 451
G I + D + WN+
Sbjct: 202 GTLIASAGKDGEIMLWNL 219
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 24/253 (9%)
Query: 218 TREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSR--ILSSGSRDRNILQ 275
T +G+Y + +++WD + + F GH++ + + + ++ SGSRD+ I
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 276 HDLRVSSDYICKLAGHKSEVCGL------KWSHDDRELASGGNDNQLLVWNQHSQQPTLR 329
++ + L GH V + K D + S GND + WN + Q
Sbjct: 134 WTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKN 389
H + + + SP +L+AS G D I WN + + ++ +V +LA+S N
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTL----TGHSL----RVLYLATSPDGQTIVTGA 441
L + + I V+ V L G+S + LA S DGQT+ G
Sbjct: 249 RYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
Query: 442 GDETLRFWNVFPS 454
D +R W V +
Sbjct: 306 TDNVIRVWQVMTA 318
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 13/198 (6%)
Query: 263 ILSSGSRDRNILQHDLRVSSDY----ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318
+L S SRD+ ++ L + GH V + D S D L +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--- 375
W+ + + R H + V ++ S +++ G+ D+ I+ W T G L ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGH 147
Query: 376 -DTGSQVCNLAWSKNVNELVSTHGYSQNQIM-VWKYPSMAKVSTLTGHSLRVLYLATSPD 433
D SQV + K ++ V+ ++++ W + GH+ + L SPD
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 434 GQTIVTGAGDETLRFWNV 451
G I + D + WN+
Sbjct: 208 GTLIASAGKDGEIMLWNL 225
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 8/163 (4%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL 350
H +V L + D R SG D +W+ T H + + AI + P+ ++
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF- 252
Query: 351 ASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNL---AWSKNVNELVSTHGYSQNQIMVW 407
G+ D R ++ +L + + +C + ++SK+ L++ GY VW
Sbjct: 253 --ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW 308
Query: 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ L GH RV L + DG + TG+ D L+ WN
Sbjct: 309 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L GH +++ + W D R L S D +L++W+ ++ + ++ V A++P S
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--S 119
Query: 348 SLLASGGGTADRC-IRFWNTSNGHQLNSVDTGSQVCNLAWSKNV--NELVSTHGYSQNQI 404
+ GG + C I T G+ S + L+ + + N++V++ G
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTC 177
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+W + + +T TGH+ V+ L+ +PD + V+GA D + + W+V
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
Query: 240 QCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCG 297
Q + RT GH + + W +SR+L S S+D ++ D +++ + + S V
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMT 113
Query: 298 LKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSSLLASG 353
++ +A GG DN ++N +++ +R++ HT + + + +SG
Sbjct: 114 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 354 GGTADRCIRFWNTSNGHQLNSVDTGS-QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
T W+ G Q + + V +L+ + + VS G +W
Sbjct: 174 DTTC----ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS--GACDASAKLWDVREG 227
Query: 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
T TGH + + P+G TG+ D T R +++
Sbjct: 228 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 26/234 (11%)
Query: 231 GQVQVWDGTQCKRVRTFGGHQT--RAGVLAWNSRILSSGSRDRNILQH---------DLR 279
G+V++W+ VR+ +T RAG + GS D I D
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 280 VSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVK 338
DYI +A H ++ L SG +D + +WN + + E H V
Sbjct: 95 AHPDYIRSIAVHPTKPYVL----------SGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ--VCNLAWSKNVNELVST 396
+A++P S ASG DR ++ W+ ++ TG + V + + ++
Sbjct: 145 CVAFNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
I +W Y + + V+TL GH V + P I++G+ D TL+ WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 26/234 (11%)
Query: 231 GQVQVWDGTQCKRVRTFGGHQT--RAGVLAWNSRILSSGSRDRNILQH---------DLR 279
G+V++W+ VR+ +T RAG + GS D I D
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 280 VSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVK 338
DYI +A H ++ L SG +D + +WN + + E H V
Sbjct: 95 AHPDYIRSIAVHPTKPYVL----------SGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ--VCNLAWSKNVNELVST 396
+A++P S ASG DR ++ W+ ++ TG + V + + ++
Sbjct: 145 CVAFNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
I +W Y + + V+TL GH V + P I++G+ D TL+ WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 8/163 (4%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL 350
H +V L + D R SG D +W+ T H + + AI + P+ ++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF- 241
Query: 351 ASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNL---AWSKNVNELVSTHGYSQNQIMVW 407
G+ D R ++ +L + + +C + ++SK+ L++ GY VW
Sbjct: 242 --ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW 297
Query: 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ L GH RV L + DG + TG+ D L+ WN
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L GH +++ + W D R L S D +L++W+ ++ + ++ V A++P S
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--S 108
Query: 348 SLLASGGGTADRC-IRFWNTSNGHQLNSVDTGSQVCNLAWSK--NVNELVSTHGYSQNQI 404
+ GG + C I T G+ S + L+ + + N++V++ G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTC 166
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+W + + +T TGH+ V+ L+ +PD + V+GA D + + W+V
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
Query: 240 QCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCG 297
Q + RT GH + + W +SR+L S S+D ++ D +++ + + S V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMT 102
Query: 298 LKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSSLLASG 353
++ +A GG DN ++N +++ +R++ HT + + + +SG
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 354 GGTADRCIRFWNTSNGHQLNSVDTGS-QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
T W+ G Q + + V +L+ + + VS G +W
Sbjct: 163 DTTC----ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS--GACDASAKLWDVREG 216
Query: 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
T TGH + + P+G TG+ D T R +++
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 8/163 (4%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL 350
H +V L + D R SG D +W+ T H + + AI + P+ ++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF- 241
Query: 351 ASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNL---AWSKNVNELVSTHGYSQNQIMVW 407
G+ D R ++ +L + + +C + ++SK+ L++ GY VW
Sbjct: 242 --ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW 297
Query: 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ L GH RV L + DG + TG+ D L+ WN
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L GH +++ + W D R L S D +L++W+ ++ + ++ V A++P S
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--S 108
Query: 348 SLLASGGGTADRC-IRFWNTSNGHQLNSVDTGSQVCNLAWSKNV--NELVSTHGYSQNQI 404
+ GG + C I T G+ S + L+ + + N++V++ G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTC 166
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+W + + +T TGH+ V+ L+ +PD + V+GA D + + W+V
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
Query: 240 QCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCG 297
Q + RT GH + + W +SR+L S S+D ++ D +++ + + S V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMT 102
Query: 298 LKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSSLLASG 353
++ +A GG DN ++N +++ +R++ HT + + + +SG
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 354 GGTADRCIRFWNTSNGHQLNSVDTGS-QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
T W+ G Q + + V +L+ + + VS G +W
Sbjct: 163 DTTC----ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS--GACDASAKLWDVREG 216
Query: 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
T TGH + + P+G TG+ D T R +++
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 8/163 (4%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL 350
H +V L + D R SG D +W+ T H + + AI + P+ ++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF- 241
Query: 351 ASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNL---AWSKNVNELVSTHGYSQNQIMVW 407
G+ D R ++ +L + + +C + ++SK+ L++ GY VW
Sbjct: 242 --ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW 297
Query: 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ L GH RV L + DG + TG+ D L+ WN
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L GH +++ + W D R L S D +L++W+ ++ + ++ V A++P S
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--S 108
Query: 348 SLLASGGGTADRC-IRFWNTSNGHQLNSVDTGSQVCNLAWSK--NVNELVSTHGYSQNQI 404
+ GG + C I T G+ S + L+ + + N++V++ G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTC 166
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+W + + +T TGH+ V+ L+ +PD + V+GA D + + W+V
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
Query: 240 QCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCG 297
Q + RT GH + + W +SR+L S S+D ++ D +++ + + S V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMT 102
Query: 298 LKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSSLLASG 353
++ +A GG DN ++N +++ +R++ HT + + + +SG
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 354 GGTADRCIRFWNTSNGHQLNSVDTGS-QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
T W+ G Q + + V +L+ + + VS G +W
Sbjct: 163 DTTC----ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS--GACDASAKLWDVREG 216
Query: 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
T TGH + + P+G TG+ D T R +++
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 8/163 (4%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL 350
H +V L + D R SG D +W+ T H + + AI + P+ ++
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF- 241
Query: 351 ASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNL---AWSKNVNELVSTHGYSQNQIMVW 407
G+ D R ++ +L + + +C + ++SK+ L++ GY VW
Sbjct: 242 --ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW 297
Query: 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ L GH RV L + DG + TG+ D L+ WN
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L GH +++ + W D R L S D +L++W+ ++ + ++ V A++P S
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--S 108
Query: 348 SLLASGGGTADRC-IRFWNTSNGHQLNSVDTGSQVCNLAWSK--NVNELVSTHGYSQNQI 404
+ GG + C I T G+ S + L+ + + N++V++ G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTC 166
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+W + + +T TGH+ V+ L+ +PD + V+GA D + + W+V
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
Query: 240 QCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCG 297
Q + RT GH + + W +SR+L S S+D ++ D +++ + + S V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMT 102
Query: 298 LKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSSLLASG 353
++ +A GG DN ++N +++ +R++ HT + + + +SG
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 354 GGTADRCIRFWNTSNGHQLNSVDTGS-QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
T W+ G Q + + V +L+ + + VS G +W
Sbjct: 163 DTTC----ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS--GACDASAKLWDVREG 216
Query: 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
T TGH + + P+G TG+ D T R +++
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 21/235 (8%)
Query: 221 GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSR----ILSSGSRDRNILQH 276
G+ I G++ ++VW K +RT GH GV W+S+ I+ SGS DR +
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGV--WSSQMRDNIIISGSTDRTLKVW 184
Query: 277 DLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAA 336
+ + + I L GH S V + H+ R + SG D L VW+ + Q L H AA
Sbjct: 185 NAE-TGECIHTLYGHTSTVRCMHL-HEKR-VVSGSRDATLRVWDIETGQCLHVLMGHVAA 241
Query: 337 VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396
V+ + + + G D ++ W+ L+++ + N +S + +
Sbjct: 242 VRCVQYDGRRVV-----SGAYDFMVKVWDPETETCLHTLQGHT---NRVYSLQFDGIHVV 293
Query: 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
G I VW + + TLTGH + L +V+G D T++ W++
Sbjct: 294 SGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELKDNILVSGNADSTVKIWDI 346
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 206 LGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILS 265
+G +V VQ+ +G + G V+VWD + T GH R L ++ +
Sbjct: 236 MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVV 293
Query: 266 SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325
SGS D +I D+ + + I L GH+S G++ D L SG D+ + +W+ + Q
Sbjct: 294 SGSLDTSIRVWDVE-TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQ 350
Query: 326 PTLRL---TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377
L +H +AV + ++ + + +S GT ++ W+ G + ++ T
Sbjct: 351 CLQTLQGPNKHQSAVTCLQFNKN-FVITSSDDGT----VKLWDLKTGEFIRNLVT 400
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 26/234 (11%)
Query: 231 GQVQVWDGTQCKRVRTFGGHQT--RAGVLAWNSRILSSGSRDRNILQH---------DLR 279
G+V++W+ VR+ +T RAG + GS D I D
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 280 VSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVK 338
DYI +A H ++ L SG +D + +WN + + E H V
Sbjct: 95 AHPDYIRSIAVHPTKPYVL----------SGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ--VCNLAWSKNVNELVST 396
+A++P S ASG DR ++ W+ ++ TG + V + + ++
Sbjct: 145 CVAFNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
I +W Y + + V+TL GH V + P I++G+ D TL+ WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 26/234 (11%)
Query: 231 GQVQVWDGTQCKRVRTFGGHQT--RAGVLAWNSRILSSGSRDRNILQH---------DLR 279
G+V++W+ VR+ +T RAG + GS D I D
Sbjct: 35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 280 VSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVK 338
DYI +A H ++ L SG +D + +WN + + E H V
Sbjct: 95 AHPDYIRSIAVHPTKPYVL----------SGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144
Query: 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ--VCNLAWSKNVNELVST 396
+A++P S ASG DR ++ W+ ++ TG + V + + ++
Sbjct: 145 CVAFNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
I +W Y + + V+TL GH V + P I++G+ D TL+ WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 24/248 (9%)
Query: 218 TREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSR--ILSSGSRDRNILQ 275
T +G+Y + +++WD + + F GH++ + + + ++ SGSRD+ I
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 276 HDLRVSSDYICKLAGHKSEVCGL------KWSHDDRELASGGNDNQLLVWNQHSQQPTLR 329
++ + L GH V + K D + S GND + WN + Q
Sbjct: 134 WTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKN 389
H + + + SP +L+AS G D I WN + + ++ +V +LA+S N
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTL----TGHSL----RVLYLATSPDGQTIVTGA 441
L + + I V+ V L G+S + LA S DGQT+ G
Sbjct: 249 RYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
Query: 442 GDETLRFW 449
D +R W
Sbjct: 306 TDNVIRVW 313
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 13/198 (6%)
Query: 263 ILSSGSRDRNILQHDLRVSSDY----ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318
+L S SRD+ ++ L + GH V + D S D L +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--- 375
W+ + + R H + V ++ S +++ G+ D+ I+ W T G L ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGH 147
Query: 376 -DTGSQVCNLAWSKNVNELVSTHGYSQNQIM-VWKYPSMAKVSTLTGHSLRVLYLATSPD 433
D SQV + K ++ V+ ++++ W + GH+ + L SPD
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 434 GQTIVTGAGDETLRFWNV 451
G I + D + WN+
Sbjct: 208 GTLIASAGKDGEIMLWNL 225
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 24/250 (9%)
Query: 218 TREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRI--LSSGSRDRNILQ 275
T +G+Y + +++WD + + F GH++ + + + + SGSRD+ I
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 276 HDLRVSSDYICKLAGHKSEVCGL------KWSHDDRELASGGNDNQLLVWNQHSQQPTLR 329
++ + L GH V + K D + S GND + WN + Q
Sbjct: 134 WTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKN 389
H + + + SP +L+AS G D I WN + ++ +V +LA+S N
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAG--KDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPN 248
Query: 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTL----TGHSL----RVLYLATSPDGQTIVTGA 441
L + + I V+ V L G+S + LA S DGQT+ G
Sbjct: 249 RYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
Query: 442 GDETLRFWNV 451
D +R W V
Sbjct: 306 TDNVIRVWQV 315
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 13/198 (6%)
Query: 263 ILSSGSRDRNILQHDLRVSSDY----ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318
+L S SRD+ ++ L + GH V + D S D L +
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--- 375
W+ + + R H + V ++ S +++ G+ D+ I+ W T G L ++
Sbjct: 92 WDVATGETYQRFVGHKSDVXSVDIDKKASXIIS---GSRDKTIKVW-TIKGQCLATLLGH 147
Query: 376 -DTGSQVCNLAWSKNVNELVSTHGYSQNQ-IMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433
D SQV + K ++ V+ ++ + W + GH+ + L SPD
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 434 GQTIVTGAGDETLRFWNV 451
G I + D + WN+
Sbjct: 208 GTLIASAGKDGEIXLWNL 225
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 15/178 (8%)
Query: 287 KLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRL-------TEHTAAVK 338
+L GH+ E GL W+ + + L S +D+ + +W+ ++ R+ T HTA V+
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVS 395
+AW SL G D+ + W+T N + ++VD + N +E +
Sbjct: 240 DVAWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 297
Query: 396 THGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQTIVTGAG-DETLRFWNV 451
G + + +W ++ K+ + H + + SP +TI+ +G D L W++
Sbjct: 298 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 232 QVQVWD---GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYI 285
++ +WD K T H L++N IL++GS D+ + DLR +
Sbjct: 259 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 318
Query: 286 CKLAGHKSEVCGLKWS-HDDRELASGGNDNQLLVWN------QHSQQ------PTLRLTE 332
HK E+ ++WS H++ LAS G D +L VW+ + S + P L
Sbjct: 319 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 378
Query: 333 --HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367
HTA + +W+P++ ++ S + D ++ W +
Sbjct: 379 GGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMA 413
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN---TSNGHQL---NSVDTG 378
QP LRL H ++W+P+ + L S + D I W+ T H++ ++ TG
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLS--ASDDHTICLWDINATPKEHRVIDAKNIFTG 233
Query: 379 --SQVCNLAWSKNVNELVSTHGYSQNQIMVW--KYPSMAKVS-TLTGHSLRVLYLATSPD 433
+ V ++AW L + Q ++M+W + + +K S T+ H+ V L+ +P
Sbjct: 234 HTAVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 292
Query: 434 GQTIV-TGAGDETLRFWNV 451
+ I+ TG+ D+T+ W++
Sbjct: 293 SEFILATGSADKTVALWDL 311
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 15/178 (8%)
Query: 287 KLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRL-------TEHTAAVK 338
+L GH+ E GL W+ + + L S +D+ + +W+ ++ R+ T HTA V+
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVS 395
+AW SL G D+ + W+T N + ++VD + N +E +
Sbjct: 236 DVAWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293
Query: 396 THGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQTIVTGAG-DETLRFWNV 451
G + + +W ++ K+ + H + + SP +TI+ +G D L W++
Sbjct: 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 232 QVQVWD---GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYI 285
++ +WD K T H L++N IL++GS D+ + DLR +
Sbjct: 255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 314
Query: 286 CKLAGHKSEVCGLKWS-HDDRELASGGNDNQLLVWN------QHSQQ------PTLRLTE 332
HK E+ ++WS H++ LAS G D +L VW+ + S + P L
Sbjct: 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 374
Query: 333 --HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367
HTA + +W+P++ ++ S + D ++ W +
Sbjct: 375 GGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMA 409
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN---TSNGHQL---NSVDTG 378
QP LRL H ++W+P+ + L S + D I W+ T H++ ++ TG
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLS--ASDDHTICLWDINATPKEHRVIDAKNIFTG 229
Query: 379 --SQVCNLAWSKNVNELVSTHGYSQNQIMVW--KYPSMAKVS-TLTGHSLRVLYLATSPD 433
+ V ++AW L + Q ++M+W + + +K S T+ H+ V L+ +P
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 288
Query: 434 GQTIV-TGAGDETLRFWNV 451
+ I+ TG+ D+T+ W++
Sbjct: 289 SEFILATGSADKTVALWDL 307
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 15/178 (8%)
Query: 287 KLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRL-------TEHTAAVK 338
+L GH+ E GL W+ + + L S +D+ + +W+ ++ R+ T HTA V+
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVS 395
+AW SL G D+ + W+T N + ++VD + N +E +
Sbjct: 238 DVAWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 295
Query: 396 THGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQTIVTGAG-DETLRFWNV 451
G + + +W ++ K+ + H + + SP +TI+ +G D L W++
Sbjct: 296 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 232 QVQVWD---GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYI 285
++ +WD K T H L++N IL++GS D+ + DLR +
Sbjct: 257 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 316
Query: 286 CKLAGHKSEVCGLKWS-HDDRELASGGNDNQLLVWN------QHSQQ------PTLRLTE 332
HK E+ ++WS H++ LAS G D +L VW+ + S + P L
Sbjct: 317 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 376
Query: 333 --HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367
HTA + +W+P++ ++ S + D ++ W +
Sbjct: 377 GGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMA 411
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN---TSNGHQL---NSVDTG 378
QP LRL H ++W+P+ + L S + D I W+ T H++ ++ TG
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLS--ASDDHTICLWDINATPKEHRVIDAKNIFTG 231
Query: 379 --SQVCNLAWSKNVNELVSTHGYSQNQIMVW--KYPSMAKVS-TLTGHSLRVLYLATSPD 433
+ V ++AW L + Q ++M+W + + +K S T+ H+ V L+ +P
Sbjct: 232 HTAVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 290
Query: 434 GQTIV-TGAGDETLRFWNV 451
+ I+ TG+ D+T+ W++
Sbjct: 291 SEFILATGSADKTVALWDL 309
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 90/197 (45%), Gaps = 30/197 (15%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-------QQPTLRLTEHTAAVKAIAWS 343
H V ++++ D AS G D ++++N + +L+ H+ +V + WS
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQV----CNLAWSKNVNELVSTHGY 399
P + + ++ +AD+ I+ WN + ++ G+++ + W+K +S +G+
Sbjct: 249 PDGTKIASA---SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305
Query: 400 SQNQIMVWKYPSMAKVSTL-TGHSLRVLYLATSPDGQTIVTGAGDETLRFWN-------- 450
+ + P + + + GH+ + L++S DG+T+ + + + W+
Sbjct: 306 -----INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 360
Query: 451 VFPSLKAPAL--VKDTS 465
VFP + A + +K TS
Sbjct: 361 VFPDVHATMITGIKTTS 377
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 215 VQWTREGSYISVGTNLGQVQVW--DGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRD 270
V + + +++VG +V V+ G V+T H +A+ N L + +
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATDQS 512
Query: 271 RNILQHDLRVSSD--YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH--SQQP 326
R ++ + + + + + H ++V + WS D+ LA+G DN ++VWN + S P
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 572
Query: 327 TLRLTEHT-AAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365
+ H ++V ++ W ++++++++G D I+FWN
Sbjct: 573 IIIKGAHAMSSVNSVIW-LNETTIVSAG---QDSNIKFWN 608
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 98/239 (41%), Gaps = 49/239 (20%)
Query: 221 GSYISVGTNLGQVQVWDGTQCKRV--RTFGGHQTRAGVLAWNS---RILSSGS-RDR--N 272
G Y + G G V++WD TQ + T ++W+S RI + G R+R +
Sbjct: 71 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130
Query: 273 ILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE 332
+ D S+ + A + V K S R + SG +DN + ++ + E
Sbjct: 131 VFLFDTGTSNGNLTGQARAMNSV-DFKPSRPFR-IISGSDDNTVAIFEGPPFKFKSTFGE 188
Query: 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNE 392
HT V ++ ++P SL AS GG D I +N +G + TG
Sbjct: 189 HTKFVHSVRYNP-DGSLFASTGG--DGTIVLYNGVDGTK-----TG-------------- 226
Query: 393 LVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
V++ S+ V+ HS V L SPDG I + + D+T++ WNV
Sbjct: 227 -------------VFEDDSLKNVA----HSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 301 SHDDRELASGGNDNQLLVWN-QHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359
S+D + +A GG D+++ V+ + ++ H A + ++A+S + + L+A+ R
Sbjct: 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD---QSR 513
Query: 360 CIRFWNTSNGHQLNSVDT----GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY--PSMA 413
+ ++ +N +L ++ ++V ++WS + L + G N ++VW PS
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT--GSLDNSVIVWNMNKPSDH 571
Query: 414 KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+ H++ + + TIV+ D ++FWNV
Sbjct: 572 PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 59/171 (34%), Gaps = 21/171 (12%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSS 348
H + K S ASG + +W+ L+ T + VK I+W
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS---------THGY 399
+ A G G RF GH DTG+ NL V G
Sbjct: 118 IAAVGEGRE----RF-----GHVF-LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 167
Query: 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
N + +++ P ST H+ V + +PDG + GD T+ +N
Sbjct: 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS---MAKVSTLTGHSLRVLYLATSPDGQ 435
+++ ++A+S N LV+T +++ + + +A ++ T H+ +V ++ SPD
Sbjct: 492 AEITSVAFSNNGAFLVATD--QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 436 TIVTGAGDETLRFWNVFPSLKAPALVK 462
+ TG+ D ++ WN+ P ++K
Sbjct: 550 RLATGSLDNSVIVWNMNKPSDHPIIIK 576
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 232 QVQVWD---GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYI 285
++ +WD K + H L++N IL++GS D+ + DLR +
Sbjct: 251 KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 310
Query: 286 CKLAGHKSEVCGLKWS-HDDRELASGGNDNQLLVWN------QHSQQ------PTLRLTE 332
HK E+ ++WS H++ LAS G D +L VW+ + S + P L
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIH 370
Query: 333 --HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367
HTA + +W+P++ ++ S + D ++ W +
Sbjct: 371 GGHTAKISDFSWNPNEPWVICS--VSEDNIMQVWQMA 405
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 15/178 (8%)
Query: 287 KLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRLTE-------HTAAVK 338
+L GH+ E GL W+ + L S +D+ + +W+ + ++ + HTA V+
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVS 395
++W SL G D+ + W+T + + +SVD + N +E +
Sbjct: 232 DVSWHLLHESLF--GSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFIL 289
Query: 396 THGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQTIVTGAG-DETLRFWNV 451
G + + +W ++ K+ + H + + SP +TI+ +G D L W++
Sbjct: 290 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS----NGHQLNS--VDTG- 378
P LRL H ++W+P+ S L S + D I W+ S G +++ + TG
Sbjct: 169 PDLRLRGHQKEGYGLSWNPNLSGHLLS--ASDDHTICLWDISAVPKEGKVVDAKTIFTGH 226
Query: 379 -SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--MAKVS-TLTGHSLRVLYLATSPDG 434
+ V +++W L + Q ++M+W S +K S ++ H+ V L+ +P
Sbjct: 227 TAVVEDVSWHLLHESLFGSVADDQ-KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 435 QTIV-TGAGDETLRFWNV 451
+ I+ TG+ D+T+ W++
Sbjct: 286 EFILATGSADKTVALWDL 303
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 23/157 (14%)
Query: 232 QVQVWD---GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYI 285
++ +WD T K H L++N IL++GS D+ + DLR +
Sbjct: 253 KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 286 CKLAGHKSEVCGLKWS-HDDRELASGGNDNQLLVWN------QHSQQ------PTLRLTE 332
HK E+ + WS H++ LAS G D +L VW+ + S + P L
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 333 --HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367
HTA + +W+P++ ++ S + D ++ W +
Sbjct: 373 GGHTAKISDFSWNPNEPWVICS--VSEDNIMQIWQMA 407
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 30/254 (11%)
Query: 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNIL----- 274
+G + G+ G+++ C+ G RA + N I+++ + ++L
Sbjct: 104 KGEFGGFGSVTGKIE------CEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYT 157
Query: 275 QHDLRVSSDYIC----KLAGHKSEVCGLKW-SHDDRELASGGNDNQLLVWNQHSQQPTLR 329
+H + C +L GH+ E GL W S+ L S +D+ + +W+ ++ +
Sbjct: 158 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 217
Query: 330 LTE-------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT---SNGHQLNSVDTGS 379
+ + H+A V+ +AW SL G D+ + W+T + + VD +
Sbjct: 218 IVDAKAIFTGHSAVVEDVAWHLLHESLF--GSVADDQKLMIWDTRSNTTSKPSHLVDAHT 275
Query: 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQTIV 438
N +E + G + + +W ++ K+ T H + + SP +TI+
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL 335
Query: 439 TGAG-DETLRFWNV 451
+G D L W++
Sbjct: 336 ASSGTDRRLNVWDL 349
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 115/280 (41%), Gaps = 42/280 (15%)
Query: 211 SVCSVQWTREGSYISVGTNLGQ-VQVWDGTQCKRVRTFGGHQT----RAGVLAWNSRILS 265
SV +VQW + + ++ + ++VWD + F +T ++ +++
Sbjct: 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA 160
Query: 266 SGSRDRNILQHDLRVSSDYICK--LAGHKSEVCGLKWS-HDDRELASGGNDNQLLVWN-- 320
G+R + DL+ S C L GH+ E+ + WS D LA+ D+++ +W+
Sbjct: 161 VGTRGPKVQLCDLKSGS---CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 321 ----------QH----SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
QH SQ T H V + ++ LL G D +R WN+
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG---TDNRMRLWNS 274
Query: 367 SNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ-------NQIMVWKYPSMAKVSTLT 419
SNG N++ +VCN + K + VS S+ + I V+ S +++ L
Sbjct: 275 SNGE--NTLVNYGKVCNNS-KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK 331
Query: 420 GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459
GH V + Q + +G+ D + W PSL P
Sbjct: 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAW--VPSLYEPV 369
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 89/236 (37%), Gaps = 32/236 (13%)
Query: 245 RTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSD---YICKLAG---------HK 292
R GG + R + SG D I+ +DL SS Y CK H+
Sbjct: 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99
Query: 293 SEVCGLKWS-HDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351
V ++W HD S D L VW+ ++ Q T + V + SP +
Sbjct: 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-TADVFNFEETVYSHHMSPVSTKHCL 158
Query: 352 SGGGTADRCIRFWNTSNGHQLNSVDTGSQ-VCNLAWSKNVNELVSTHGYSQNQIMVWKY- 409
GT ++ + +G + + Q + ++WS + +++T + +++ +W
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILAT-ASADSRVKLWDVR 217
Query: 410 ---------------PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
S A S T H+ +V L + DG ++T D +R WN
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 249 GHQTRAGVLAW--NSRILSSGSRDRNI------LQHDLRVSSDYICKLAGHKSEVCGLKW 300
H+ +AW ++ +L++GS D + D D + + GH++EV G+ W
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 301 SHDDRELASGGNDNQLLVWNQHSQQPTLR----LTEHTAAVKAIAWSPHQSSLLASGGGT 356
S+D LA+ D + +W L EH+ VK + W P + +LLAS +
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLAS--SS 172
Query: 357 ADRCIRFW-NTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH----GYSQNQIMVWKY 409
D +R W + + + +V G + WS + ++ G + + VWKY
Sbjct: 173 YDDTVRIWKDYDDDWECVAVLNGHE--GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 23/172 (13%)
Query: 300 WSHDDRE--LASGGNDNQL----LVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASG 353
WS D + LA+G D ++ + ++ + L T H A++++AW PH +SLLA+
Sbjct: 18 WSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAA- 75
Query: 354 GGTADRCIRFW------NTSNGHQLNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQIM 405
G+ D + W + + L ++ G ++V +AWS + L + +
Sbjct: 76 -GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS--RDKSVW 132
Query: 406 VWKYPSMAK----VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453
+W+ + +S L HS V ++ P + + + D+T+R W +
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 27/132 (20%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWD----GTQCKRVRTFGGHQTRAGVLAWN-- 260
G + V V W+ +G Y++ + V +W+ G + + + H + W+
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164
Query: 261 SRILSSGSRDRNILQHDLRVSSDY------ICKLAGHKSEVCGLKWSHD-DR-----ELA 308
+L+S S D + R+ DY + L GH+ G WS D D+ L
Sbjct: 165 EALLASSSYDDTV-----RIWKDYDDDWECVAVLNGHE----GTVWSSDFDKTEGVFRLC 215
Query: 309 SGGNDNQLLVWN 320
SG +D+ + VW
Sbjct: 216 SGSDDSTVRVWK 227
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 119/272 (43%), Gaps = 16/272 (5%)
Query: 189 CVYLWTASN----SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWD-GTQCKR 243
CV +W S+ S V++L L + + S + +G + VG + +WD R
Sbjct: 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 244 VR---TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW 300
++ T A ++ +S++ S D NI DL + + + GH +
Sbjct: 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDI 191
Query: 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360
S+D +L +GG DN + W+ + L+ + T+ + ++ + P LA G +++
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVE 249
Query: 361 IRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG 420
+ N + +QL+ + S V +L ++ VST N + W+ P A + +
Sbjct: 250 VLHVNKPDKYQLHLHE--SCVLSLKFAYCGKWFVSTG--KDNLLNAWRTPYGASIFQ-SK 304
Query: 421 HSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452
S VL S D + IVTG+GD+ + V
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 10/167 (5%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWN-----QHSQQPTLRLTEHTAAVKAIAWSPH 345
H VC + S+ R + +GG + VW+ S L +++ P
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 346 QSSLLASGGGTADRCIRFWN-TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQI 404
+L+ G + + W+ + ++ + T S A + + + V S I
Sbjct: 109 GCTLIVGGEAST---LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
VW + V GH+ + S DG + TG D T+R W++
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 288 LAGHKSEVCGLKWS-HDDRELASGGNDNQLLVWNQHS-------QQPTLRLTEHTAAVKA 339
+ GH + V + W H+D +ASG D ++VW ++P + L HT V
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 340 IAWSPHQSSLLASGGGTADRCIRFWNTSNG 369
+AW P ++L S G D I W+ G
Sbjct: 137 VAWHPTAQNVLLSAG--CDNVILVWDVGTG 164
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------GSQVCNL 384
HTA V IAW PH +++AS G+ D + W +G + + +V +
Sbjct: 80 HTAPVLDIAWCPHNDNVIAS--GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 385 AWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL--TGHSLRVLYLATSPDGQTIVTGAG 442
AW ++ + G N I+VW + A V TL H + + S DG I T
Sbjct: 138 AWHPTAQNVLLSAG-CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 443 DETLR 447
D+ +R
Sbjct: 197 DKRVR 201
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 21/208 (10%)
Query: 224 ISVGTNLGQVQVW---DGTQCKRVR----TFGGHQTRAGVLAWN---SRILSSGSRDRNI 273
I+ G+ V VW DG +R T GH R G++AW+ +L S D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 274 LQHDLRVSSDYICKLAG-HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL---R 329
L D+ + + H + + WS D + + D ++ V R
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216
Query: 330 LTEHTAAVKAIAWSPHQSSLLASG-GGTADRCIRFWNTSNGHQ---LNSVDTGSQVCNLA 385
E T V A+ S + +L +G ++R + W+T + + L +DT S V
Sbjct: 217 PHEGTRPVHAVFVS--EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274
Query: 386 WSKNVNELVSTHGYSQNQIMVWKYPSMA 413
+ + N +V G + I ++ S A
Sbjct: 275 FDPDTN-IVYLCGKGDSSIRYFEITSEA 301
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 171 LNLVDW--SSQNVL-AVGLGTCVYLWTASNSKVTRLCDLGPG---DSVCSVQWTREGSYI 224
+ +V W ++QNVL + G + +W + LGP D++ SV W+R+G+ I
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 225 SVGTNLGQVQVWDGTQ----CKRVRTFGGHQTRAGVLAWNSRILSSG 267
+V+V + + ++ R G + V +IL++G
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 288 LAGHKSEVCGLKWS-HDDRELASGGNDNQLLVWNQHS-------QQPTLRLTEHTAAVKA 339
+ GH + V + W H+D +ASG D ++VW ++P + L HT V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 340 IAWSPHQSSLLASGGGTADRCIRFWNTSNG 369
+AW P ++L S G D I W+ G
Sbjct: 137 VAWHPTAQNVLLSAG--XDNVILVWDVGTG 164
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------GSQVCNL 384
HTA V IAW PH +++AS G+ D + W +G + + +V +
Sbjct: 80 HTAPVLDIAWXPHNDNVIAS--GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 385 AWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL--TGHSLRVLYLATSPDGQTIVTGAG 442
AW ++ + G N I+VW + A V TL H + + S DG I T
Sbjct: 138 AWHPTAQNVLLSAG-XDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 443 DETLR 447
D+ +R
Sbjct: 197 DKRVR 201
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 97/252 (38%), Gaps = 24/252 (9%)
Query: 183 AVGLGTCVYLWTASNSKVTRLCDLGPGDS--VCSVQWT-REGSYISVGTNLGQVQVW--- 236
A G G + L +V + L G + V + W + I+ G+ V VW
Sbjct: 53 ASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP 112
Query: 237 DGTQCKRVR----TFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLA 289
DG +R T GH R G++AW+ +L S D IL D+ + +
Sbjct: 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP 172
Query: 290 G-HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL---RLTEHTAAVKAIAWSPH 345
H + + WS D + + D ++ V R E T V A+ S
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-- 230
Query: 346 QSSLLASG-GGTADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401
+ +L +G ++R + W+T + + L +DT S V + + N +V G
Sbjct: 231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN-IVYLCGKGD 289
Query: 402 NQIMVWKYPSMA 413
+ I ++ S A
Sbjct: 290 SSIRYFEITSEA 301
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 282 SDYIC--KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKA 339
+D +C L GH +V L W+ + + S D +L+VWN + Q T + H V
Sbjct: 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Query: 340 IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-----LNSVDTG----SQVCNLAWSKNV 390
A++P+ S+ GG C F +S + ++ V TG + C +
Sbjct: 114 CAFAPNGQSVAC--GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET 171
Query: 391 NELVSTHGYSQNQIMVWKYPSMAKVSTL-----TGHSLRVLYLAT-SPDGQTIVTGAGDE 444
+ G ++W + ++S +GH+ VL L+ S + ++G+ D
Sbjct: 172 RLIT---GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228
Query: 445 TLRFWNVFPSLKA 457
T+R W++ + +A
Sbjct: 229 TVRLWDLRITSRA 241
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 30/228 (13%)
Query: 245 RTFGGHQTRAGVLAWNSR---ILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS 301
RT GH + L W I+S+ R I+ + L + KL H V ++
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL--HCPWVMECAFA 117
Query: 302 HDDRELASGGNDNQLLVWNQHSQ------QPTLR-LTEHTAAVKAIAWSPHQSSLLASGG 354
+ + +A GG D+ ++N SQ P R LT H + + P Q + L +G
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 355 GTADRCIRFWNTSNGHQL----------NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQI 404
G D+ W+ + G ++ ++ D S N S N N +S G +
Sbjct: 178 G--DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN---SLNANMFIS--GSCDTTV 230
Query: 405 MVWKYPSMAK-VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+W ++ V T GH + + PDGQ TG+ D T R +++
Sbjct: 231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 83/240 (34%), Gaps = 77/240 (32%)
Query: 235 VWDGTQCKRVRTFG-----GHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYIC 286
+WD T +R+ FG GH L+ NS + SGS D + DLR++S +
Sbjct: 184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR 243
Query: 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346
GH+ ++ +K+ D + +G +D
Sbjct: 244 TYHGHEGDINSVKFFPDGQRFGTGSDD--------------------------------- 270
Query: 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNEL------------- 393
GT R ++ GHQL QV N +N NEL
Sbjct: 271 --------GTC----RLFDMRTGHQL-------QVYNREPDRNDNELPIVTSVAFSISGR 311
Query: 394 VSTHGYSQNQIMVWKYPSMAKVSTL----TGHSLRVLYLATSPDGQTIVTGAGDETLRFW 449
+ GYS VW V L H R+ L S DG + TG+ D+ L+ W
Sbjct: 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 394 VSTHGYSQNQIMVWKYPS-MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452
V + +Q + V P+ + TL GHS +V L +P+ IV+ + D L WN
Sbjct: 37 VEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL 96
Query: 453 PSLKAPAL 460
S K A+
Sbjct: 97 TSQKTHAI 104
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 23/157 (14%)
Query: 232 QVQVWD---GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYI 285
++ +WD T K H L++N IL++GS D+ + DLR +
Sbjct: 253 KLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 286 CKLAGHKSEVCGLKWS-HDDRELASGGNDNQLLVWN------QHSQQ------PTLRLTE 332
HK E+ + WS H++ LAS G D +L VW+ + S + P L
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 333 --HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367
HTA + +W+P++ ++ S + D + W +
Sbjct: 373 GGHTAKISDFSWNPNEPWVICS--VSEDNIXQIWQXA 407
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 104/254 (40%), Gaps = 30/254 (11%)
Query: 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNIL----- 274
+G + G+ G+++ C+ G RA N I+++ + ++L
Sbjct: 104 KGEFGGFGSVTGKIE------CEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYT 157
Query: 275 QHDLRVSSDYIC----KLAGHKSEVCGLKW-SHDDRELASGGNDNQLLVWNQHSQQPTLR 329
+H + C +L GH+ E GL W S+ L S +D+ + +W+ ++ +
Sbjct: 158 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 217
Query: 330 LTE-------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT---SNGHQLNSVDTGS 379
+ + H+A V+ +AW SL G D+ + W+T + + VD +
Sbjct: 218 IVDAKAIFTGHSAVVEDVAWHLLHESLF--GSVADDQKLXIWDTRSNTTSKPSHLVDAHT 275
Query: 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQTIV 438
N +E + G + + +W ++ K+ T H + + SP +TI+
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL 335
Query: 439 TGAG-DETLRFWNV 451
+G D L W++
Sbjct: 336 ASSGTDRRLNVWDL 349
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 247 FGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLR--VSSDYICKLAGHKSEVCGLKWS 301
F GH +AW+ + S + D+ + D R +S + H +EV L ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 302 -HDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADR 359
+ + LA+G D + +W+ + + L E H + + WSPH ++LAS G DR
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG--TDR 342
Query: 360 CIRFWNTS 367
+ W+ S
Sbjct: 343 RLNVWDLS 350
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 87/228 (38%), Gaps = 26/228 (11%)
Query: 246 TFGGHQTRA-GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD 304
T GH T L + + +G+ D+ I +D ++ ++ +L+GH V LK++H
Sbjct: 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYD-SINKKFLLQLSGHDGGVWALKYAHGG 174
Query: 305 RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAI---------------------AWS 343
L SG D + VW+ T H + V+ + W
Sbjct: 175 I-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQ 403
+ S + G D + F V G S + N +VS G N
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS--GSYDNT 291
Query: 404 IMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
++VW M + L+GH+ R+ + + ++ + D T+R W++
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 244 VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDL-RVSSDYICKLAGHKSEVCGLKWSH 302
V GH ++ + I+ SGS D ++ D+ ++ YI L+GH + + H
Sbjct: 263 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI--LSGHTDRIYSTIYDH 320
Query: 303 DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362
+ + S D + +W+ + + L HTA V + S L S AD IR
Sbjct: 321 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSAA--ADGSIR 375
Query: 363 FWNTSN 368
W+ ++
Sbjct: 376 GWDAND 381
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK 292
+++WD + + T GH G+L + + L S + D +I D ++DY K + H
Sbjct: 334 IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHH 390
Query: 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323
+ + + + + G++NQ ++N S
Sbjct: 391 TNLSAITTFYVSDNILVSGSENQFNIYNLRS 421
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Query: 221 GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR--AGVLAWNSRILSSGSRDRNILQHDL 278
G+ + G+ + VWD Q K + GH R + + + S S D I DL
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Query: 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVK 338
+ + + L GH + V L+ S D+ L S D + W+ + + + + H +
Sbjct: 340 E-NGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD--ANDYSRKFSYHHTNLS 394
Query: 339 AIAWSPHQSSLLASG 353
AI ++L SG
Sbjct: 395 AITTFYVSDNILVSG 409
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L GH+ V + SH AS D + +W+ + + + +A+SP S
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DS 134
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMV 406
LA+G T + + +G + S+DT G + ++A+S + L S G I +
Sbjct: 135 QYLATG--THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS--GAIDGIINI 190
Query: 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+ + + TL GH++ + L SPD Q +VT + D ++ ++V
Sbjct: 191 FDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 74/161 (45%), Gaps = 4/161 (2%)
Query: 186 LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245
L + LW N K + D GP D+ ++ ++ + Y++ GT++G+V ++ K+
Sbjct: 100 LDAHIRLWDLENGKQIKSIDAGPVDA-WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158
Query: 246 TFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD 303
+ +A+ + + L+SG+ D I D+ + + L GH + L +S D
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 304 DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP 344
+ L + +D + +++ L+ H + V +A+ P
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ--TRAGVLAWNSRILSS 266
G + S+ ++ +G Y++ G G + ++D K + T GH R+ + +S++L +
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326
S D I +D++ ++ L+GH S V + + DD S +D + VW+ ++
Sbjct: 224 ASDDGYIKIYDVQ-HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282
Query: 327 TLRLTEHTAAVKAIAWSPHQSSLLASG 353
+H V + ++ + S +++ G
Sbjct: 283 VHTFFDHQDQVWGVKYNGNGSKIVSVG 309
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 23/255 (9%)
Query: 210 DSVCSVQW---TREGSYISVG---TNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSR- 262
D++ SV W +E S V +L +V W + + GHQ GV++ +
Sbjct: 33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL--GVVSVDISH 90
Query: 263 ---ILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319
I +S S D +I DL + I + + L +S D + LA+G + ++ ++
Sbjct: 91 TLPIAASSSLDAHIRLWDLE-NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 149
Query: 320 NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS 379
S + L + +IA+SP LASG D I ++ + G L++++ +
Sbjct: 150 GVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGA--IDGIINIFDIATGKLLHTLEGHA 206
Query: 380 Q-VCNLAWSKNVNELV--STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQT 436
+ +L +S + LV S GY I ++ TL+GH+ VL +A PD
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGY----IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 262
Query: 437 IVTGAGDETLRFWNV 451
V+ + D++++ W+V
Sbjct: 263 FVSSSSDKSVKVWDV 277
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 31/238 (13%)
Query: 164 SLQDDFYLNLVDWSSQNVLAVGL----GTCVYLWTASNSKVTRLCDLGP-GDSVCSVQW- 217
SLQ D N +DWS N + G +Y +N+ + + SV +V++
Sbjct: 63 SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122
Query: 218 TREGSYISVGTNLGQVQVWDGTQCKRVRT----FGGHQTRAGV-----LAWN---SRILS 265
++ + ++ G N G++ +WD +C + Q+ + V LAWN + + +
Sbjct: 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA 182
Query: 266 SGSRDRNILQHDLRVSSD-----YICKLAGHKSEVCGLKW--SHDDRELASGGNDNQ--L 316
S DL+ + Y +G K ++ ++W + R + G+DN +
Sbjct: 183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242
Query: 317 LVWN-QHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL 372
L+W+ +++ P L + H + ++ W LL S G D + WN + QL
Sbjct: 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG--RDNTVLLWNPESAEQL 298
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 72/144 (50%), Gaps = 23/144 (15%)
Query: 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL----RLTEHTAAVKAIAWSPHQSS 348
S+ L WSH+++ +A ++ L +++ + + R + H+++VK + ++ Q +
Sbjct: 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN 127
Query: 349 LLASGGGTADRCIRFWNTSN-------------GHQLNSVDTGSQVCNLAWSKNVNELVS 395
+LASGG + I W+ + G ++SVD +V +LAW++++ + +
Sbjct: 128 VLASGGNNGE--IFIWDMNKCTESPSNYTPLTPGQSMSSVD---EVISLAWNQSLAHVFA 182
Query: 396 THGYSQNQIMVWKYPSMAKVSTLT 419
+ G S N +W + +V L+
Sbjct: 183 SAG-SSNFASIWDLKAKKEVIHLS 205
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 26/202 (12%)
Query: 255 GVLAWNSRILSSGSRDRNILQHDLR-VSSDYICKLAGHKSEVCGLKWSHDD--RELASGG 311
VL + + L++ S D+ I ++ + I L GH+ V + W+H LAS
Sbjct: 17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 76
Query: 312 NDNQLLVWNQHS---QQPTLRLTEHTAAVKAIAWSPHQSS---LLASGGGTADRCIRFWN 365
D ++L+W + + Q + H+A+V ++ W+PH+ L+AS G + F
Sbjct: 77 YDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKV-SVVEFKE 134
Query: 366 TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH-----------GYSQNQIMVWKYPSMAK 414
+ V + +W+ E H G + N + +WKY S A+
Sbjct: 135 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194
Query: 415 V----STLTGHSLRVLYLATSP 432
STL GHS V +A SP
Sbjct: 195 TYVLESTLEGHSDWVRDVAWSP 216
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 86/228 (37%), Gaps = 26/228 (11%)
Query: 246 TFGGHQTRA-GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD 304
T GH T L + + +G+ D+ I +D ++ ++ +L+GH V LK++H
Sbjct: 116 TLRGHXTSVITCLQFEDNYVITGADDKXIRVYD-SINKKFLLQLSGHDGGVWALKYAHGG 174
Query: 305 RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAI---------------------AWS 343
L SG D + VW+ T H + V+ + W
Sbjct: 175 I-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQ 403
+ S + G D + F V G S + N +VS G N
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVS--GSYDNT 291
Query: 404 IMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
++VW + L+GH+ R+ + + ++ + D T+R W++
Sbjct: 292 LIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 8/126 (6%)
Query: 244 VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDL-RVSSDYICKLAGHKSEVCGLKWSH 302
V GH ++ + I+ SGS D ++ D+ + YI L+GH + + H
Sbjct: 263 VGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI--LSGHTDRIYSTIYDH 320
Query: 303 DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362
+ + S D + +W+ + + L HTA V + S L S AD IR
Sbjct: 321 ERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS---DKFLVSAA--ADGSIR 375
Query: 363 FWNTSN 368
W+ ++
Sbjct: 376 GWDAND 381
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 192 LWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ 251
+W + K + G D + S + E + +++WD + T GH
Sbjct: 294 VWDVAQXKCLYILS-GHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHT 352
Query: 252 TRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG 311
G+L + + L S + D +I D ++DY K + H + + + + + G
Sbjct: 353 ALVGLLRLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHHTNLSAITTFYVSDNILVSG 409
Query: 312 NDNQLLVWNQHS 323
++NQ ++N S
Sbjct: 410 SENQFNIYNLRS 421
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 26/202 (12%)
Query: 255 GVLAWNSRILSSGSRDRNILQHDLR-VSSDYICKLAGHKSEVCGLKWSHDD--RELASGG 311
VL + + L++ S D+ I ++ + I L GH+ V + W+H LAS
Sbjct: 15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 312 NDNQLLVWNQHS---QQPTLRLTEHTAAVKAIAWSPHQSS---LLASGGGTADRCIRFWN 365
D ++L+W + + Q + H+A+V ++ W+PH+ L+AS G + F
Sbjct: 75 YDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVS-VVEFKE 132
Query: 366 TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH-----------GYSQNQIMVWKYPSMAK 414
+ V + +W+ E H G + N + +WKY S A+
Sbjct: 133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Query: 415 V----STLTGHSLRVLYLATSP 432
STL GHS V +A SP
Sbjct: 193 TYVLESTLEGHSDWVRDVAWSP 214
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 24/201 (11%)
Query: 255 GVLAWNSRILSSGSRDRNILQHDLR-VSSDYICKLAGHKSEVCGLKWSHDD--RELASGG 311
VL + + L++ S D+ I ++ + I L GH+ V + W+H LAS
Sbjct: 15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 312 NDNQLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPHQSS---LLASGGGTADRCIRFWNT 366
D ++L+W + + + + H+A+V ++ W+PH+ L+AS G + F
Sbjct: 75 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV-SVVEFKEN 133
Query: 367 SNGHQLNSVDTGSQVCNLAWSKNVNELVSTH-----------GYSQNQIMVWKYPSMAKV 415
+ V + +W+ E H G + N + +WKY S A+
Sbjct: 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 416 ----STLTGHSLRVLYLATSP 432
STL GHS V +A SP
Sbjct: 194 YVLESTLEGHSDWVRDVAWSP 214
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 24/201 (11%)
Query: 255 GVLAWNSRILSSGSRDRNILQHDLR-VSSDYICKLAGHKSEVCGLKWSHDD--RELASGG 311
V+ + + +++ S D+ I ++ + I L GH+ V + W+H LAS
Sbjct: 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 312 NDNQLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPHQSS---LLASGGGTADRCIRFWNT 366
D ++++W + + + + H+A+V ++ W+PH+ L+AS G + F
Sbjct: 75 YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV-SVVEFKEN 133
Query: 367 SNGHQLNSVDTGSQVCNLAWSKNVNELVSTH-----------GYSQNQIMVWKYPSMAKV 415
+ V + +W+ E H G + N + +WKY S A+
Sbjct: 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 416 ----STLTGHSLRVLYLATSP 432
STL GHS V +A SP
Sbjct: 194 YVLESTLEGHSDWVRDVAWSP 214
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAW--SPHQSS 348
H V + WS D ++ + D +W+ S Q +++ +H A VK I W +P+ S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 349 LLASGGGTADRCIRFWNTSNGHQL 372
++ G+ D+ ++FW+T + + +
Sbjct: 144 VMT---GSWDKTLKFWDTRSSNPM 164
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 264 LSSGSRDRNILQHDLRVSSDY-ICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWN 320
L++ S DR++ D+R I L GH+ V + W+H LAS D ++++W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 321 QH--SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356
+ + + + H ++V ++ W+PH L+ + G +
Sbjct: 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS 125
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 25/120 (20%)
Query: 305 RELASGGNDNQLLVWNQHSQ---QPTLRLTEHTAAVKAIAWSPH---QSSLLASGGGTAD 358
+ ASGG DN + +W + + +L H+ V+ +AW+P +S +AS + D
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQD 237
Query: 359 RCIRFWNTSNG----------HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408
+ W + H+ N V V +++WS N L + G N++ +WK
Sbjct: 238 GRVFIWTCDDASSNTWSPKLLHKFNDV-----VWHVSWSITANILAVSGG--DNKVTLWK 290
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 87/225 (38%), Gaps = 14/225 (6%)
Query: 190 VYLWTASNSK---VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246
V LW ++ V++ C D V +V G+ G+ ++VWD Q + +
Sbjct: 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS 164
Query: 247 FGGHQTRAGVLAWNSR---ILSSGSRDRNILQHDLRV---SSDYICKLAGHKSEVCGLKW 300
+ H + +A + + S S D IL D R +S C G+ L W
Sbjct: 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT--SLAW 222
Query: 301 SHDDRELASGGNDNQLL-VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359
E+ G++N + + + S L H+ V + +SPH LAS + D
Sbjct: 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS--LSEDC 280
Query: 360 CIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQI 404
+ ++S S V + WS + L++T G+ +
Sbjct: 281 SLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVV 325
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 299 KWSHDD-----------RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
K+ HDD + SG D + VW+ Q H A V +A SPH+
Sbjct: 123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 348 SLLASGGGTADRCIRFWNT---SNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQI 404
S+ S + D I W+T Q+ G +LAW +E V G +
Sbjct: 183 SVFLS--CSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE-VFVFGDENGTV 239
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSP 432
+ S + V + HS V L SP
Sbjct: 240 SLVDTKSTSCVLSSAVHSQCVTGLVFSP 267
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 23/170 (13%)
Query: 285 ICKLAGHKSEVCGLKWSHDD--RELASGGNDNQLLVWNQHSQQPTLRLTE--HTAAVKAI 340
I L GH+ V + W+H LAS D ++ +W + + + + H+A+V ++
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 341 AWSPHQSS---LLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH 397
W+PH+ L+AS G + F + V + +W+ E H
Sbjct: 106 QWAPHEYGPXLLVASSDGKV-SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 398 -----------GYSQNQIMVWKYPSMAKV----STLTGHSLRVLYLATSP 432
G + N + +WKY S A+ STL GHS V +A SP
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ--QPTLRLTEHTAAVKAIAWSP 344
+L H +V G+ W+ D + + G D VW + +PTL + A + + W+P
Sbjct: 47 ELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 106
Query: 345 HQSSLLASGGGTADRCIRFWNTSN 368
++ A G G+ I ++ N
Sbjct: 107 NEKK-FAVGSGSRVISICYFEQEN 129
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ--QPTLRLTEHTAAVKAIAWSP 344
+L H +V G+ W+ D + + G D VW + +PTL + A + + W+P
Sbjct: 47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 106
Query: 345 HQSSLLASGGGTADRCIRFWNTSN 368
++ A G G+ I ++ N
Sbjct: 107 NEKK-FAVGSGSRVISICYFEQEN 129
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 18/159 (11%)
Query: 178 SQNVLAVGL--GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQV 235
SQN +AVGL G + ++ S+ +V+ + + +YI+ G +G++ +
Sbjct: 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 514
Query: 236 WDGTQCKRVRT--FGGHQTRAGVLAW------------NSRILSSGSRDRNILQHDLRVS 281
+D Q + V+T + ++ ++W ++++GS D NI + ++
Sbjct: 515 YD-LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573
Query: 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320
I L HK V L W L S G D + WN
Sbjct: 574 MKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWN 611
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 18/159 (11%)
Query: 178 SQNVLAVGL--GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQV 235
SQN +AVGL G + ++ S+ +V+ + + +YI+ G G++ +
Sbjct: 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILL 514
Query: 236 WDGTQCKRVRT--FGGHQTRAGVLAW------------NSRILSSGSRDRNILQHDLRVS 281
+D Q + V+T + ++ ++W ++++GS D NI + ++
Sbjct: 515 YD-LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573
Query: 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320
I L HK V L W L S G D + WN
Sbjct: 574 XKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWN 611
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 23/173 (13%)
Query: 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352
++V L WSHD + +G + +L +WN+ + L H A + ++ W+ + +++
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNV-LNFHRAPIVSVKWNKDGTHIISM 167
Query: 353 GGGTADRCIRFWNTSNGHQL----------------NSVDTGSQVCNLAWSKNVNELVST 396
+ WN +G + N GS ++ W + ++
Sbjct: 168 ---DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224
Query: 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFW 449
+ I V++ L GH + L + + +++ + D TLR W
Sbjct: 225 ---PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 74/180 (41%), Gaps = 21/180 (11%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN---SRILSS 266
+ V + W+ +G+ I G G++++W+ T + H+ + WN + I+S
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGA-LLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 267 GSRDRNIL---------QH-DLRVSSDYICKLAGHKSE---VCGLKWSHDDRELASGGND 313
+ IL QH +L+ + H + ++W DD+ + G
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK- 226
Query: 314 NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN 373
+ V+ + PT +L H + + ++ LL++ + D +R W+ NG+ N
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA---SDDGTLRIWHGGNGNSQN 283
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Query: 248 GGHQTRAGV--LAWNSR--ILSSGSRDRNILQHDLRVSSDYICKLAG--HKSEVCGLKWS 301
G QT AGV +AW S IL + L L S + K A H V L
Sbjct: 89 AGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF 148
Query: 302 HDDRELASGGNDNQLLVWNQHSQQPTLR-LTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360
D + SGG D + VW+ SQ+ L+ H++ V +A P + ++ S G D
Sbjct: 149 SDGTQAVSGGKDFSVKVWDL-SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGR 205
Query: 361 IRFWNTSNGHQLNSVD 376
I W+T +D
Sbjct: 206 ILLWDTRKPKPATRID 221
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 9/206 (4%)
Query: 156 PHKVLDAPSLQDDFYLNLVDW-SSQNVLAVGLGTCVYLWTASNSK---VTRLCDLGPGDS 211
P++ L +Q + + V W S + +L V LW + V + D
Sbjct: 82 PNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDI 141
Query: 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW----NSRILSSG 267
V ++ +G+ G V+VWD +Q ++++ H + +A ++ LS G
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 268 SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS-HDDRELASGGNDNQLLVWNQHSQQP 326
R +L + + + W D A G + + N +
Sbjct: 202 EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261
Query: 327 TLRLTEHTAAVKAIAWSPHQSSLLAS 352
H+ + +A+S H S LAS
Sbjct: 262 AQTSAVHSQNITGLAYSYHSSPFLAS 287
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 290 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSL 349
H SE+ LK+ L S D QL +W+ L H A V IA ++
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 350 LASGGGTADRCIRFWNTSNGHQLNSVD 376
L++ + D IR W G +++ +
Sbjct: 194 LSA---SLDGTIRLWECGTGTTIHTFN 217
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 379 SQVCNLAWSKNVNELVSTHGYSQN-QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437
S++ L + + L+S+ SQ+ Q+ +W + TL GH V +A G+ +
Sbjct: 137 SEITKLKFFPSGEALISS---SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 438 VTGAGDETLRFW 449
++ + D T+R W
Sbjct: 194 LSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 290 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSL 349
H SE+ LK+ L S D QL +W+ L H A V IA ++
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 350 LASGGGTADRCIRFWNTSNGHQLNSVD 376
L++ + D IR W G +++ +
Sbjct: 197 LSA---SLDGTIRLWECGTGTTIHTFN 220
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 379 SQVCNLAWSKNVNELVSTHGYSQN-QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437
S++ L + + L+S+ SQ+ Q+ +W + TL GH V +A G+ +
Sbjct: 140 SEITKLKFFPSGEALISS---SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 438 VTGAGDETLRFW 449
++ + D T+R W
Sbjct: 197 LSASLDGTIRLW 208
>pdb|5PRN|A Chain A, E1m, Y96w, S119w Mutant Of Rh. Blastica Porin
Length = 289
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 355 GTADRCIRFWNTSNGHQLN--SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV--WKYP 410
GTA +FW + NG ++ +VDT L W + S+ G +Q+ WKY
Sbjct: 63 GTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTWDSEMGYEASSFGDAQSSFFAYNWKYD 122
Query: 411 SMAKVSTLTGHSLRV------LYLATSPDGQTI 437
+ + G ++ LYL+ QT+
Sbjct: 123 ASGALDNYNGIAVTYSISGVNLYLSYVDPDQTV 155
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346
KL GH+ + +K++ + L S D+ VW + + L HT + +I
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 347 SSLLASGGGTADRCIRFWNTSNG 369
+ G+AD I+ W+ SNG
Sbjct: 87 KYCVT---GSADYSIKLWDVSNG 106
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 33/134 (24%)
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377
++N SQ + ++ +++++ +SP S L + + CI + T G ++ S+
Sbjct: 230 LYNFESQHS---MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS- 285
Query: 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437
V TH S A + HS V+ L+ + G+T+
Sbjct: 286 ----------------VPTHS------------SQASLGEF-AHSSWVMSLSFNDSGETL 316
Query: 438 VTGAGDETLRFWNV 451
+ D LRFW+V
Sbjct: 317 CSAGWDGKLRFWDV 330
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 33/134 (24%)
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377
++N SQ + ++ +++++ +SP S L + + CI + T G ++ S+
Sbjct: 220 LYNFESQHS---MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS- 275
Query: 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437
V TH S A + HS V+ L+ + G+T+
Sbjct: 276 ----------------VPTH------------SSQASLGEF-AHSSWVMSLSFNDSGETL 306
Query: 438 VTGAGDETLRFWNV 451
+ D LRFW+V
Sbjct: 307 CSAGWDGKLRFWDV 320
>pdb|2F6D|A Chain A, Structure Of The Complex Of A Glucoamylase From
Saccharomycopsis Fibuligera With Acarbose
pdb|2FBA|A Chain A, Glucoamylase From Saccharomycopsis Fibuligera At Atomic
Resolution
pdb|1AYX|A Chain A, Crystal Structure Of Glucoamylase From Saccharomycopsis
Fibuligera At 1.7 Angstroms
Length = 492
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 154 KTPHKV-LDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSV 212
+ P+K+ DA S +D +N +++ N V L T + +S+S VT ++V
Sbjct: 371 QVPYKLAYDAKSASNDITINKINYDFFNKYIVDLSTINSAYQSSDS-VTIKSGSDEFNTV 429
Query: 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRN 272
T S++ V L + DG+ +++ + G+ T A L W+S L R RN
Sbjct: 430 ADNLVTFGDSFLQVI--LDHIND-DGSLNEQLNRYTGYSTGAYSLTWSSGALLEAIRLRN 486
Query: 273 ILQ 275
++
Sbjct: 487 KVK 489
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,893,919
Number of Sequences: 62578
Number of extensions: 626875
Number of successful extensions: 2281
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1415
Number of HSP's gapped (non-prelim): 338
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)